Query 001926
Match_columns 995
No_of_seqs 315 out of 1438
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 12:32:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0323 TFIIF-interacting CTD 100.0 2.4E-47 5.2E-52 440.7 17.2 336 644-994 112-531 (635)
2 TIGR02250 FCP1_euk FCP1-like p 100.0 6.6E-34 1.4E-38 281.8 13.1 155 676-840 1-156 (156)
3 KOG1605 TFIIF-interacting CTD 100.0 8.3E-34 1.8E-38 301.8 9.5 172 675-899 83-258 (262)
4 TIGR02251 HIF-SF_euk Dullard-l 100.0 3.6E-30 7.7E-35 255.4 13.8 158 681-880 1-159 (162)
5 PF03031 NIF: NLI interacting 100.0 8.5E-30 1.8E-34 247.7 12.9 157 682-894 1-159 (159)
6 TIGR02245 HAD_IIID1 HAD-superf 99.9 1.2E-27 2.6E-32 245.8 13.1 166 676-899 16-190 (195)
7 KOG2832 TFIIF-interacting CTD 99.9 1.2E-22 2.6E-27 222.2 12.1 159 677-901 185-344 (393)
8 smart00577 CPDc catalytic doma 99.8 8.1E-21 1.8E-25 185.1 12.7 144 680-841 1-145 (148)
9 COG5190 FCP1 TFIIF-interacting 99.8 5.8E-20 1.2E-24 205.0 9.1 179 670-899 201-380 (390)
10 COG5190 FCP1 TFIIF-interacting 99.5 3.6E-14 7.8E-19 159.0 9.1 271 675-978 20-350 (390)
11 PF12738 PTCB-BRCT: twin BRCT 99.4 2.6E-13 5.6E-18 115.0 6.8 63 908-975 1-63 (63)
12 PF00533 BRCT: BRCA1 C Terminu 99.4 1.7E-12 3.7E-17 111.1 7.3 75 901-980 2-78 (78)
13 KOG3226 DNA repair protein [Re 99.3 1.7E-12 3.8E-17 142.8 5.0 87 902-993 315-401 (508)
14 smart00292 BRCT breast cancer 99.2 5.3E-11 1.2E-15 99.5 7.5 77 903-983 1-80 (80)
15 cd00027 BRCT Breast Cancer Sup 99.2 8.7E-11 1.9E-15 96.1 8.1 71 907-981 1-72 (72)
16 PLN03122 Poly [ADP-ribose] pol 98.5 2.2E-07 4.8E-12 113.2 7.7 87 901-993 186-277 (815)
17 PLN03123 poly [ADP-ribose] pol 98.4 3.2E-07 7E-12 113.7 7.2 88 901-993 390-480 (981)
18 KOG1929 Nucleotide excision re 98.2 1.6E-06 3.5E-11 105.5 5.5 100 891-995 90-190 (811)
19 KOG1929 Nucleotide excision re 97.9 6.6E-06 1.4E-10 100.3 2.8 97 892-993 481-577 (811)
20 COG4996 Predicted phosphatase 97.8 5.2E-05 1.1E-09 75.5 7.4 135 683-838 2-146 (164)
21 PRK14350 ligA NAD-dependent DN 97.7 8.1E-05 1.7E-09 90.0 9.4 73 903-979 592-664 (669)
22 KOG0323 TFIIF-interacting CTD 97.7 1.5E-05 3.2E-10 95.2 2.9 251 493-765 377-634 (635)
23 PRK07956 ligA NAD-dependent DN 97.6 0.00019 4E-09 87.0 9.8 74 904-981 590-663 (665)
24 KOG3524 Predicted guanine nucl 97.6 2.1E-05 4.5E-10 93.4 1.4 81 903-993 117-197 (850)
25 PRK14351 ligA NAD-dependent DN 97.6 0.0003 6.4E-09 85.6 11.0 75 904-982 609-684 (689)
26 PRK06063 DNA polymerase III su 97.6 0.00018 3.8E-09 79.9 7.9 72 904-980 232-305 (313)
27 cd01427 HAD_like Haloacid deha 97.6 0.00013 2.8E-09 66.0 5.7 63 683-774 1-64 (139)
28 COG0272 Lig NAD-dependent DNA 97.5 0.00035 7.7E-09 83.9 9.2 73 903-979 593-665 (667)
29 PRK06195 DNA polymerase III su 97.4 0.00038 8.2E-09 76.9 8.2 71 904-978 220-304 (309)
30 TIGR01685 MDP-1 magnesium-depe 97.4 0.00026 5.7E-09 72.8 6.1 138 682-834 3-153 (174)
31 KOG3548 DNA damage checkpoint 97.4 0.00014 2.9E-09 88.8 4.5 85 903-993 924-1035(1176)
32 TIGR01681 HAD-SF-IIIC HAD-supe 97.4 0.00014 2.9E-09 70.3 3.6 80 735-822 29-119 (128)
33 TIGR01684 viral_ppase viral ph 97.2 0.00076 1.7E-08 74.8 7.3 74 676-786 121-196 (301)
34 TIGR00575 dnlj DNA ligase, NAD 97.2 0.00063 1.4E-08 82.4 7.1 69 903-975 583-651 (652)
35 PF12689 Acid_PPase: Acid Phos 97.1 0.00081 1.7E-08 69.2 5.6 121 681-822 3-135 (169)
36 PHA03398 viral phosphatase sup 97.1 0.0011 2.3E-08 73.8 6.9 75 675-786 122-198 (303)
37 KOG0966 ATP-dependent DNA liga 97.1 0.0014 2.9E-08 79.7 8.1 86 901-990 630-718 (881)
38 KOG2043 Signaling protein SWIF 97.0 0.00096 2.1E-08 83.0 6.4 79 908-994 660-739 (896)
39 TIGR01662 HAD-SF-IIIA HAD-supe 96.9 0.003 6.4E-08 60.1 7.9 101 682-820 1-112 (132)
40 TIGR01686 FkbH FkbH-like domai 96.7 0.0022 4.9E-08 70.8 5.5 107 680-822 2-114 (320)
41 COG5275 BRCT domain type II [G 96.6 0.0049 1.1E-07 65.8 7.4 80 897-980 149-229 (276)
42 KOG4362 Transcriptional regula 96.6 0.0021 4.6E-08 77.5 5.3 78 908-993 479-562 (684)
43 TIGR01261 hisB_Nterm histidino 96.6 0.0057 1.2E-07 61.9 7.5 108 682-821 2-130 (161)
44 PHA02530 pseT polynucleotide k 96.4 0.0034 7.3E-08 67.7 4.5 128 678-834 155-292 (300)
45 TIGR00338 serB phosphoserine p 96.4 0.0056 1.2E-07 62.7 5.8 48 734-782 84-132 (219)
46 TIGR01489 DKMTPPase-SF 2,3-dik 96.3 0.0082 1.8E-07 59.3 6.5 49 734-784 71-120 (188)
47 PF05152 DUF705: Protein of un 96.2 0.012 2.5E-07 65.3 7.7 76 675-786 116-192 (297)
48 KOG2481 Protein required for n 96.2 0.0041 8.9E-08 72.8 4.4 80 902-993 325-415 (570)
49 TIGR01656 Histidinol-ppas hist 96.2 0.017 3.7E-07 56.7 8.0 66 682-774 1-82 (147)
50 TIGR01664 DNA-3'-Pase DNA 3'-p 96.1 0.02 4.3E-07 58.2 8.3 110 680-821 12-137 (166)
51 TIGR01672 AphA HAD superfamily 96.1 0.0089 1.9E-07 64.5 6.1 99 678-786 60-168 (237)
52 PRK08942 D,D-heptose 1,7-bisph 96.1 0.017 3.6E-07 58.4 7.3 107 681-821 3-130 (181)
53 TIGR00213 GmhB_yaeD D,D-heptos 96.0 0.017 3.7E-07 58.2 7.2 28 734-761 25-53 (176)
54 TIGR01533 lipo_e_P4 5'-nucleot 96.0 0.021 4.4E-07 62.8 7.9 89 678-786 72-172 (266)
55 COG5163 NOP7 Protein required 95.7 0.0097 2.1E-07 68.0 4.3 81 902-993 348-439 (591)
56 TIGR02253 CTE7 HAD superfamily 94.8 0.034 7.3E-07 56.9 4.4 84 733-821 92-177 (221)
57 PF13419 HAD_2: Haloacid dehal 94.5 0.043 9.3E-07 52.4 4.3 86 732-822 74-161 (176)
58 PRK11009 aphA acid phosphatase 94.5 0.069 1.5E-06 57.8 6.2 54 732-786 111-170 (237)
59 PRK05446 imidazole glycerol-ph 94.5 0.15 3.2E-06 58.3 9.1 54 680-759 1-55 (354)
60 KOG3109 Haloacid dehalogenase- 94.4 0.071 1.5E-06 57.6 5.9 83 734-824 99-191 (244)
61 KOG3524 Predicted guanine nucl 94.2 0.012 2.7E-07 70.9 -0.2 95 893-993 199-293 (850)
62 PRK08238 hypothetical protein; 93.9 0.074 1.6E-06 62.8 5.4 91 734-835 71-165 (479)
63 TIGR02254 YjjG/YfnB HAD superf 93.6 0.094 2E-06 53.4 4.9 84 733-821 95-180 (224)
64 TIGR01449 PGP_bact 2-phosphogl 93.4 0.11 2.4E-06 52.7 5.0 97 733-834 83-181 (213)
65 TIGR01689 EcbF-BcbF capsule bi 93.1 0.26 5.6E-06 48.9 6.8 50 735-785 24-86 (126)
66 PRK13288 pyrophosphatase PpaX; 93.0 0.18 3.9E-06 51.8 5.9 87 733-824 80-168 (214)
67 TIGR01509 HAD-SF-IA-v3 haloaci 93.0 0.14 3.1E-06 50.3 4.9 83 734-822 84-168 (183)
68 PLN02770 haloacid dehalogenase 92.9 0.15 3.2E-06 54.4 5.2 96 733-833 106-203 (248)
69 PRK11133 serB phosphoserine ph 92.7 0.11 2.5E-06 58.3 4.2 87 734-821 180-274 (322)
70 TIGR01428 HAD_type_II 2-haloal 92.6 0.14 3E-06 51.9 4.4 83 734-821 91-175 (198)
71 TIGR01663 PNK-3'Pase polynucle 92.5 0.31 6.7E-06 58.4 7.8 112 679-821 166-294 (526)
72 TIGR01454 AHBA_synth_RP 3-amin 92.4 0.23 4.9E-06 50.7 5.6 97 733-834 73-171 (205)
73 PRK06769 hypothetical protein; 92.4 0.24 5.1E-06 50.4 5.7 83 735-821 28-120 (173)
74 PF08645 PNK3P: Polynucleotide 92.3 0.18 3.9E-06 51.1 4.7 53 682-759 1-54 (159)
75 PLN03243 haloacid dehalogenase 92.3 0.17 3.6E-06 55.0 4.7 95 733-832 107-203 (260)
76 TIGR01993 Pyr-5-nucltdase pyri 92.1 0.12 2.7E-06 51.7 3.3 83 734-822 83-169 (184)
77 TIGR01668 YqeG_hyp_ppase HAD s 92.0 0.31 6.7E-06 49.4 6.1 93 679-821 23-118 (170)
78 PRK09449 dUMP phosphatase; Pro 92.0 0.2 4.4E-06 51.6 4.8 83 734-821 94-178 (224)
79 PRK13222 phosphoglycolate phos 92.0 0.29 6.2E-06 50.1 5.8 87 733-824 91-179 (226)
80 TIGR01422 phosphonatase phosph 91.3 0.31 6.7E-06 51.6 5.4 96 734-833 98-196 (253)
81 PRK10563 6-phosphogluconate ph 91.1 0.16 3.5E-06 52.3 3.0 96 733-834 86-182 (221)
82 COG2179 Predicted hydrolase of 90.7 0.45 9.8E-06 49.7 5.7 114 674-837 21-140 (175)
83 TIGR01459 HAD-SF-IIA-hyp4 HAD- 90.7 0.49 1.1E-05 50.2 6.2 67 680-785 7-76 (242)
84 PF13344 Hydrolase_6: Haloacid 90.5 0.5 1.1E-05 44.5 5.4 31 737-767 16-51 (101)
85 PRK10826 2-deoxyglucose-6-phos 90.1 0.38 8.3E-06 49.8 4.7 94 734-832 91-186 (222)
86 PRK00192 mannosyl-3-phosphogly 90.1 0.64 1.4E-05 50.1 6.5 57 681-774 4-61 (273)
87 PRK13226 phosphoglycolate phos 89.9 0.52 1.1E-05 49.5 5.6 87 733-824 93-181 (229)
88 PRK14988 GMP/IMP nucleotidase; 89.6 0.33 7.1E-06 51.2 3.7 94 734-832 92-187 (224)
89 TIGR01675 plant-AP plant acid 89.3 1.3 2.9E-05 48.1 8.1 101 666-786 62-172 (229)
90 COG1011 Predicted hydrolase (H 89.0 0.57 1.2E-05 47.9 4.9 85 734-823 98-183 (229)
91 PRK11587 putative phosphatase; 88.8 0.71 1.5E-05 47.9 5.5 86 733-824 81-168 (218)
92 PRK10725 fructose-1-P/6-phosph 88.8 0.37 8.1E-06 48.1 3.3 86 734-825 87-173 (188)
93 PF08282 Hydrolase_3: haloacid 88.7 0.74 1.6E-05 46.7 5.4 36 737-772 17-53 (254)
94 COG2503 Predicted secreted aci 88.6 0.66 1.4E-05 51.1 5.2 28 670-697 68-95 (274)
95 PLN02575 haloacid dehalogenase 88.4 0.6 1.3E-05 54.0 5.1 86 734-824 215-302 (381)
96 TIGR01670 YrbI-phosphatas 3-de 88.3 1.3 2.8E-05 44.3 6.7 73 734-822 29-103 (154)
97 TIGR02009 PGMB-YQAB-SF beta-ph 88.3 0.43 9.4E-06 47.3 3.4 82 734-822 87-170 (185)
98 COG0561 Cof Predicted hydrolas 88.2 1.2 2.7E-05 47.3 6.9 58 681-775 3-61 (264)
99 TIGR01456 CECR5 HAD-superfamil 87.7 0.92 2E-05 50.7 5.8 52 682-771 1-61 (321)
100 PRK13223 phosphoglycolate phos 87.4 0.98 2.1E-05 49.1 5.7 85 734-823 100-186 (272)
101 PRK09456 ?-D-glucose-1-phospha 87.0 0.49 1.1E-05 48.4 3.0 88 732-823 81-170 (199)
102 TIGR01487 SPP-like sucrose-pho 86.9 1.4 3.1E-05 45.5 6.3 39 737-775 20-59 (215)
103 PRK09552 mtnX 2-hydroxy-3-keto 86.9 1.9 4.1E-05 45.0 7.3 38 734-771 73-111 (219)
104 TIGR02252 DREG-2 REG-2-like, H 86.8 0.94 2E-05 46.0 4.9 82 734-821 104-187 (203)
105 PTZ00445 p36-lilke protein; Pr 86.6 1.2 2.6E-05 48.3 5.6 73 665-763 29-104 (219)
106 TIGR03333 salvage_mtnX 2-hydro 86.5 1.3 2.7E-05 46.2 5.7 50 733-782 68-118 (214)
107 TIGR02461 osmo_MPG_phos mannos 86.2 1.5 3.3E-05 46.5 6.2 36 738-773 18-54 (225)
108 PLN02779 haloacid dehalogenase 85.8 1 2.2E-05 49.5 4.8 96 734-833 143-241 (286)
109 PRK03669 mannosyl-3-phosphogly 85.5 1.9 4.2E-05 46.4 6.7 59 679-774 5-64 (271)
110 TIGR01548 HAD-SF-IA-hyp1 haloa 85.5 1.3 2.8E-05 45.2 5.1 81 735-821 106-188 (197)
111 PRK10530 pyridoxal phosphate ( 85.3 2.5 5.4E-05 44.8 7.3 58 681-775 3-61 (272)
112 TIGR00099 Cof-subfamily Cof su 85.2 1.8 3.9E-05 45.9 6.2 38 737-774 18-56 (256)
113 PRK13478 phosphonoacetaldehyde 85.1 1.6 3.4E-05 46.9 5.8 87 734-824 100-189 (267)
114 PRK10513 sugar phosphate phosp 85.0 1.9 4.1E-05 45.9 6.3 57 681-774 3-60 (270)
115 TIGR02463 MPGP_rel mannosyl-3- 84.8 1.5 3.3E-05 45.3 5.3 35 740-774 21-56 (221)
116 TIGR01488 HAD-SF-IB Haloacid D 84.5 1.6 3.5E-05 43.0 5.1 49 734-783 72-121 (177)
117 TIGR02247 HAD-1A3-hyp Epoxide 84.0 0.68 1.5E-05 47.4 2.4 87 733-824 92-182 (211)
118 TIGR01491 HAD-SF-IB-PSPlk HAD- 83.6 2.6 5.6E-05 42.3 6.2 50 734-784 79-129 (201)
119 PRK01158 phosphoglycolate phos 83.6 2.9 6.3E-05 43.2 6.8 57 682-775 4-61 (230)
120 TIGR01549 HAD-SF-IA-v1 haloaci 83.3 2.5 5.3E-05 41.0 5.7 82 733-821 62-144 (154)
121 PLN02940 riboflavin kinase 83.3 1 2.2E-05 51.7 3.6 84 734-822 92-178 (382)
122 TIGR03351 PhnX-like phosphonat 82.7 2 4.3E-05 44.2 5.1 85 734-822 86-174 (220)
123 TIGR01544 HAD-SF-IE haloacid d 82.3 2.2 4.8E-05 47.6 5.6 52 733-784 119-174 (277)
124 TIGR01484 HAD-SF-IIB HAD-super 81.8 2.5 5.3E-05 43.1 5.4 36 737-772 19-55 (204)
125 TIGR01691 enolase-ppase 2,3-di 81.5 1.9 4.2E-05 46.2 4.6 85 733-824 93-182 (220)
126 PRK15126 thiamin pyrimidine py 81.4 3.3 7.1E-05 44.4 6.3 57 682-775 3-60 (272)
127 PF11019 DUF2608: Protein of u 81.3 1.5 3.3E-05 47.9 3.9 100 680-780 19-127 (252)
128 TIGR01486 HAD-SF-IIB-MPGP mann 81.2 3.3 7.1E-05 44.2 6.3 35 739-773 20-55 (256)
129 PRK13225 phosphoglycolate phos 81.2 2.1 4.5E-05 47.0 4.9 81 734-822 141-223 (273)
130 TIGR02137 HSK-PSP phosphoserin 80.9 2.5 5.5E-05 44.5 5.2 50 734-784 67-116 (203)
131 PRK13582 thrH phosphoserine ph 80.7 2.6 5.7E-05 42.8 5.1 49 733-782 66-114 (205)
132 smart00775 LNS2 LNS2 domain. T 80.4 3 6.6E-05 42.3 5.4 30 736-765 28-58 (157)
133 TIGR01482 SPP-subfamily Sucros 80.2 3.5 7.5E-05 42.4 5.8 35 738-772 18-53 (225)
134 PRK10976 putative hydrolase; P 79.7 4.2 9.1E-05 43.3 6.5 57 682-775 3-60 (266)
135 PRK10444 UMP phosphatase; Prov 79.5 3.2 6.8E-05 45.1 5.5 51 683-771 3-54 (248)
136 COG0637 Predicted phosphatase/ 79.0 1.7 3.7E-05 46.0 3.2 84 734-822 85-170 (221)
137 PRK05601 DNA polymerase III su 78.8 3.9 8.5E-05 47.6 6.2 74 904-982 294-369 (377)
138 PRK06698 bifunctional 5'-methy 78.8 2.9 6.3E-05 48.8 5.3 82 734-822 329-411 (459)
139 PHA02597 30.2 hypothetical pro 78.8 1 2.2E-05 45.7 1.5 95 733-835 72-171 (197)
140 PLN02645 phosphoglycolate phos 77.3 3.8 8.3E-05 45.6 5.5 54 681-772 28-82 (311)
141 TIGR01493 HAD-SF-IA-v2 Haloaci 76.8 0.84 1.8E-05 45.2 0.2 77 734-821 89-166 (175)
142 TIGR01458 HAD-SF-IIA-hyp3 HAD- 76.7 3.9 8.4E-05 44.3 5.2 46 683-762 3-49 (257)
143 PLN02811 hydrolase 76.5 2.6 5.6E-05 43.9 3.7 86 734-824 77-170 (220)
144 PF03767 Acid_phosphat_B: HAD 76.3 4.1 8.9E-05 43.9 5.2 78 678-775 69-156 (229)
145 TIGR01990 bPGM beta-phosphoglu 75.8 2.8 6.1E-05 41.6 3.6 82 734-822 86-169 (185)
146 PLN02954 phosphoserine phospha 74.8 6.7 0.00015 40.5 6.2 50 734-783 83-134 (224)
147 PRK09484 3-deoxy-D-manno-octul 74.1 9 0.00019 39.4 6.8 60 749-822 63-123 (183)
148 PLN02919 haloacid dehalogenase 73.2 4.5 9.7E-05 52.5 5.3 83 736-822 162-246 (1057)
149 TIGR01452 PGP_euk phosphoglyco 72.9 6 0.00013 43.1 5.5 24 737-760 20-44 (279)
150 COG0241 HisB Histidinol phosph 72.7 12 0.00026 39.7 7.4 108 681-821 5-132 (181)
151 PTZ00174 phosphomannomutase; P 72.5 7.7 0.00017 41.6 6.1 17 680-696 4-20 (247)
152 TIGR01680 Veg_Stor_Prot vegeta 72.5 12 0.00026 42.0 7.7 50 737-786 147-197 (275)
153 PRK10187 trehalose-6-phosphate 72.4 5.4 0.00012 43.6 5.0 60 680-771 13-74 (266)
154 TIGR01457 HAD-SF-IIA-hyp2 HAD- 70.9 7.1 0.00015 42.1 5.4 14 683-696 3-16 (249)
155 PF09419 PGP_phosphatase: Mito 70.5 8.2 0.00018 40.3 5.6 60 677-772 37-106 (168)
156 PLN03017 trehalose-phosphatase 70.5 7.4 0.00016 45.2 5.7 64 674-769 104-167 (366)
157 PLN02423 phosphomannomutase 69.1 9.1 0.0002 41.3 5.8 17 680-696 6-22 (245)
158 COG3882 FkbH Predicted enzyme 68.9 2.6 5.7E-05 50.3 1.8 120 676-826 217-342 (574)
159 COG4502 5'(3')-deoxyribonucleo 67.0 2.6 5.6E-05 43.5 1.0 30 734-763 67-96 (180)
160 TIGR01485 SPP_plant-cyano sucr 66.5 10 0.00022 40.4 5.5 15 681-695 1-15 (249)
161 COG0647 NagD Predicted sugar p 66.3 8.5 0.00018 42.9 5.0 53 679-769 6-59 (269)
162 KOG0966 ATP-dependent DNA liga 65.6 23 0.00051 44.8 8.8 62 931-992 808-881 (881)
163 PLN02887 hydrolase family prot 65.5 11 0.00024 46.2 6.1 61 677-774 304-365 (580)
164 TIGR01460 HAD-SF-IIA Haloacid 65.0 7.8 0.00017 41.4 4.2 33 738-770 17-54 (236)
165 PRK12702 mannosyl-3-phosphogly 63.8 15 0.00033 41.8 6.4 35 740-774 23-58 (302)
166 TIGR01490 HAD-SF-IB-hyp1 HAD-s 63.2 11 0.00025 38.1 4.8 49 734-783 86-135 (202)
167 TIGR00685 T6PP trehalose-phosp 63.0 5.9 0.00013 42.3 2.9 62 680-774 2-63 (244)
168 PLN03243 haloacid dehalogenase 60.9 2.8 6E-05 45.7 0.0 20 677-696 20-39 (260)
169 COG4359 Uncharacterized conser 60.5 17 0.00037 39.2 5.6 39 734-772 72-111 (220)
170 PLN02151 trehalose-phosphatase 59.8 18 0.00039 42.0 6.1 63 675-769 92-154 (354)
171 PRK14502 bifunctional mannosyl 59.6 18 0.0004 45.2 6.5 59 679-774 414-473 (694)
172 COG0546 Gph Predicted phosphat 55.4 24 0.00052 37.1 5.8 84 734-822 88-173 (220)
173 TIGR01548 HAD-SF-IA-hyp1 haloa 55.3 6.5 0.00014 40.1 1.6 14 683-696 2-15 (197)
174 KOG3548 DNA damage checkpoint 54.4 13 0.00029 47.5 4.2 62 926-987 1086-1159(1176)
175 PRK10725 fructose-1-P/6-phosph 54.1 7.3 0.00016 39.0 1.7 43 922-972 142-184 (188)
176 PLN02580 trehalose-phosphatase 53.4 24 0.00051 41.4 5.8 63 675-769 113-175 (384)
177 PHA02597 30.2 hypothetical pro 53.1 7.8 0.00017 39.4 1.7 43 926-978 134-178 (197)
178 TIGR02244 HAD-IG-Ncltidse HAD 53.1 15 0.00033 42.3 4.2 42 731-772 180-223 (343)
179 PRK11587 putative phosphatase; 51.3 7.9 0.00017 40.2 1.5 15 682-696 4-18 (218)
180 COG0560 SerB Phosphoserine pho 50.5 29 0.00063 37.1 5.5 50 733-783 75-125 (212)
181 TIGR01993 Pyr-5-nucltdase pyri 50.4 8.1 0.00018 38.9 1.3 14 683-696 2-15 (184)
182 TIGR02253 CTE7 HAD superfamily 48.6 9.6 0.00021 39.1 1.6 15 682-696 3-17 (221)
183 PRK13288 pyrophosphatase PpaX; 48.2 9.9 0.00021 39.2 1.6 16 681-696 3-18 (214)
184 COG1105 FruK Fructose-1-phosph 48.0 38 0.00083 38.8 6.2 73 889-973 112-184 (310)
185 TIGR03351 PhnX-like phosphonat 47.9 11 0.00023 38.9 1.8 15 682-696 2-16 (220)
186 PRK11590 hypothetical protein; 47.2 11 0.00024 39.4 1.8 39 734-772 94-134 (211)
187 COG1877 OtsB Trehalose-6-phosp 46.4 36 0.00079 38.1 5.7 63 675-769 12-76 (266)
188 PRK10748 flavin mononucleotide 46.2 18 0.00038 38.5 3.2 83 734-826 112-197 (238)
189 TIGR02252 DREG-2 REG-2-like, H 46.1 12 0.00026 38.1 1.8 14 683-696 2-15 (203)
190 KOG3120 Predicted haloacid deh 46.1 17 0.00038 40.1 3.1 41 734-774 83-125 (256)
191 PRK13223 phosphoglycolate phos 45.8 10 0.00023 41.4 1.4 16 681-696 13-28 (272)
192 TIGR02009 PGMB-YQAB-SF beta-ph 43.9 11 0.00025 37.3 1.2 15 682-696 2-16 (185)
193 PRK13226 phosphoglycolate phos 43.3 12 0.00025 39.6 1.2 15 682-696 13-27 (229)
194 TIGR01549 HAD-SF-IA-v1 haloaci 42.5 10 0.00022 36.7 0.7 14 683-696 1-14 (154)
195 TIGR01990 bPGM beta-phosphoglu 42.4 10 0.00022 37.6 0.7 14 683-696 1-14 (185)
196 PRK13478 phosphonoacetaldehyde 42.4 14 0.0003 39.8 1.7 15 682-696 5-19 (267)
197 PF13419 HAD_2: Haloacid dehal 42.1 13 0.00028 35.5 1.3 13 684-696 1-13 (176)
198 PF06941 NT5C: 5' nucleotidase 41.4 16 0.00034 37.6 1.8 79 734-833 72-157 (191)
199 PLN02770 haloacid dehalogenase 41.3 13 0.00028 39.8 1.2 15 682-696 23-37 (248)
200 TIGR01454 AHBA_synth_RP 3-amin 40.8 11 0.00023 38.7 0.5 13 684-696 1-13 (205)
201 TIGR01422 phosphonatase phosph 40.0 18 0.00038 38.5 2.0 15 682-696 3-17 (253)
202 PRK10748 flavin mononucleotide 39.7 14 0.0003 39.2 1.2 15 682-696 11-25 (238)
203 TIGR01511 ATPase-IB1_Cu copper 39.6 53 0.0012 39.9 6.1 41 734-774 404-445 (562)
204 TIGR01509 HAD-SF-IA-v3 haloaci 39.3 14 0.00031 36.2 1.2 14 683-696 1-14 (183)
205 PRK11590 hypothetical protein; 39.2 40 0.00088 35.2 4.5 17 680-696 5-21 (211)
206 PF00702 Hydrolase: haloacid d 39.1 57 0.0012 32.7 5.4 43 732-774 124-167 (215)
207 TIGR01428 HAD_type_II 2-haloal 38.7 15 0.00033 37.2 1.3 14 683-696 3-16 (198)
208 COG0546 Gph Predicted phosphat 38.5 18 0.00039 38.1 1.8 18 680-697 3-20 (220)
209 TIGR01449 PGP_bact 2-phosphogl 38.0 13 0.00027 37.9 0.5 13 684-696 1-13 (213)
210 PRK13225 phosphoglycolate phos 37.8 15 0.00033 40.4 1.1 16 681-696 62-77 (273)
211 TIGR02254 YjjG/YfnB HAD superf 37.7 16 0.00036 37.2 1.3 93 871-976 102-200 (224)
212 TIGR01493 HAD-SF-IA-v2 Haloaci 37.4 16 0.00034 36.3 1.0 13 684-696 2-14 (175)
213 TIGR02247 HAD-1A3-hyp Epoxide 37.1 20 0.00044 36.7 1.9 15 682-696 3-17 (211)
214 PF12710 HAD: haloacid dehalog 36.9 30 0.00065 34.4 3.0 47 736-782 86-138 (192)
215 PRK10826 2-deoxyglucose-6-phos 36.4 20 0.00042 37.3 1.6 17 680-696 6-22 (222)
216 PRK13222 phosphoglycolate phos 36.4 18 0.00039 37.1 1.3 15 682-696 7-21 (226)
217 PRK14501 putative bifunctional 36.1 57 0.0012 40.8 5.7 61 678-770 489-551 (726)
218 PLN02382 probable sucrose-phos 35.5 19 0.00041 42.2 1.5 21 675-695 3-23 (413)
219 TIGR01491 HAD-SF-IB-PSPlk HAD- 35.2 21 0.00046 35.8 1.6 15 682-696 5-19 (201)
220 PRK09449 dUMP phosphatase; Pro 34.8 18 0.00039 37.3 1.1 47 922-974 150-196 (224)
221 PRK14988 GMP/IMP nucleotidase; 34.6 21 0.00045 37.8 1.5 16 681-696 10-25 (224)
222 PLN02779 haloacid dehalogenase 33.7 24 0.00053 38.9 1.9 17 680-696 39-55 (286)
223 TIGR01545 YfhB_g-proteo haloac 33.1 58 0.0013 34.5 4.5 37 734-770 93-131 (210)
224 COG3769 Predicted hydrolase (H 30.5 1.3E+02 0.0028 33.7 6.6 33 744-776 32-65 (274)
225 PF05116 S6PP: Sucrose-6F-phos 30.3 61 0.0013 35.2 4.2 33 738-770 22-55 (247)
226 PRK10563 6-phosphogluconate ph 30.2 26 0.00057 36.2 1.4 16 681-696 4-19 (221)
227 TIGR02726 phenyl_P_delta pheny 30.1 2.3E+02 0.005 29.5 8.1 59 749-821 49-108 (169)
228 PF13701 DDE_Tnp_1_4: Transpos 29.2 1.1E+02 0.0023 36.6 6.2 126 638-778 102-244 (448)
229 PRK13582 thrH phosphoserine ph 29.1 30 0.00064 35.2 1.5 12 683-694 3-14 (205)
230 PF08235 LNS2: LNS2 (Lipin/Ned 26.1 1.1E+02 0.0023 32.1 4.9 37 735-771 27-64 (157)
231 PRK06698 bifunctional 5'-methy 26.1 30 0.00065 40.6 1.0 15 682-696 242-256 (459)
232 COG0637 Predicted phosphatase/ 25.9 34 0.00073 36.4 1.3 15 682-696 3-17 (221)
233 PF05822 UMPH-1: Pyrimidine 5' 25.7 97 0.0021 34.6 4.7 39 733-771 88-127 (246)
234 PLN02954 phosphoserine phospha 25.6 35 0.00076 35.3 1.3 17 680-696 11-27 (224)
235 TIGR02137 HSK-PSP phosphoserin 23.7 38 0.00083 35.8 1.2 13 683-695 3-15 (203)
236 TIGR01525 ATPase-IB_hvy heavy 23.6 1E+02 0.0022 37.3 4.8 45 734-779 383-429 (556)
237 PF06888 Put_Phosphatase: Puta 23.4 1.2E+02 0.0026 33.4 4.9 49 734-784 70-121 (234)
238 COG1011 Predicted hydrolase (H 23.1 46 0.00099 34.2 1.6 16 681-696 4-19 (229)
239 TIGR02471 sucr_syn_bact_C sucr 22.1 40 0.00086 35.6 0.9 13 684-696 2-14 (236)
240 PLN02575 haloacid dehalogenase 22.0 53 0.0011 38.6 2.0 19 678-696 128-146 (381)
241 COG0560 SerB Phosphoserine pho 21.6 47 0.001 35.6 1.4 16 679-694 3-18 (212)
242 PRK09552 mtnX 2-hydroxy-3-keto 21.3 48 0.001 34.7 1.4 16 681-696 3-18 (219)
No 1
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=100.00 E-value=2.4e-47 Score=440.68 Aligned_cols=336 Identities=36% Similarity=0.539 Sum_probs=272.1
Q ss_pred ccCcchhhcCCchhhhhHhhHHHHhhhHHHhhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcce
Q 001926 644 WGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRH 723 (995)
Q Consensus 644 ~~~f~~L~~g~~~~q~~~i~ke~akrL~~q~~LLs~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~ 723 (995)
..-|+++..+++..+.... ..+.+..+..+++.++|+||+|||+||+|+.....+.... .+...+.. ....+..
T Consensus 112 ~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l~e~~--~~l~~~~~-~~~sn~d 185 (635)
T KOG0323|consen 112 GRSFDYLVKGLQLSNEMVA---FTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDLSETE--KYLKEEAE-SVESNKD 185 (635)
T ss_pred ccchhcccchhhhhhhhhh---hhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchhhhhh--hhcccccc-ccccccc
Confidence 4556788888776665433 5677878888888899999999999999998654333211 11111110 0001223
Q ss_pred eEEec----cceEEEeecccHHHHHHHHhccceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCC
Q 001926 724 LFRFP----HMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVP 799 (995)
Q Consensus 724 lF~~~----~~~~yVKLRPgL~EFLeeLSk~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~ 799 (995)
+|+++ ...||||+||++.+||++++++|||||||+|++.||..|+++|||+|.||++|||+|++.. ..
T Consensus 186 l~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~~--------~~ 257 (635)
T KOG0323|consen 186 LFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDESP--------FF 257 (635)
T ss_pred ceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCCC--------cc
Confidence 44443 2578999999999999999999999999999999999999999999999999999999742 13
Q ss_pred cccccccccCCC-CcEEEEcCCCcccccCccccccccceeeccCcccccCC-----------------------------
Q 001926 800 KSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGL----------------------------- 849 (995)
Q Consensus 800 yiKDLsrVLGrd-s~VVIVDDsp~vw~~qpdNgI~IkpY~yF~~s~~q~g~----------------------------- 849 (995)
..+||...+.+. ++||||||+.+||.+++.|+|.|.+|.||.+..+.+..
T Consensus 258 kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~yF~~~gd~nap~~~~~~~~~~~~~~~~~~k~~~~s~~~~~ 337 (635)
T KOG0323|consen 258 KTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYPYFSGQGDINAPPPLHVLRNVACSVRGAFFKEFDPSLKSRI 337 (635)
T ss_pred cccccccCCCCCCccEEEEeCccccccCCCcceEEeeeeecccCcccccCCcccccccchhcccccccccccCccccccc
Confidence 567777555665 89999999999999998899999999999987643321
Q ss_pred --------------------------------------------CCCCcccccccCccchhhhHHHHHHHHHHHhhcccc
Q 001926 850 --------------------------------------------LGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSH 885 (995)
Q Consensus 850 --------------------------------------------p~pSl~Ei~~DedpeD~eLl~LL~fLe~IHq~FF~~ 885 (995)
-..++.+...|+.+.|++|.+++++|+.||..||..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~~ 417 (635)
T KOG0323|consen 338 SEVRYEDDDESNPTSYSVELSANPGPLKQDGMDEFVPEENAPEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFAK 417 (635)
T ss_pred ccccccccccccCcccccccccccCcccccccccccccccchhhcccccccccccccccchhHHHHhhhhcccchhhhhc
Confidence 123444555677788999999999999999999997
Q ss_pred C-----CCCcchhHHHHHHHHHhhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHH
Q 001926 886 Q-----SLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKV 960 (995)
Q Consensus 886 ~-----~L~~~DVR~ILkeiQrkILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~gTeKv 960 (995)
. .+...|||.+|.++++++|+||.++|||++|.+.+. +...+...+..+|+....+++..+||+|+.+.+|.|+
T Consensus 418 ~~~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~~-~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~ 496 (635)
T KOG0323|consen 418 YDEVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGSTD-ESADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKV 496 (635)
T ss_pred cccccccccCCChhhhhhhhhhHHhhccceeecccccCcCCc-chhhhhhhhhcccceecccccchhhhHHhhccCccee
Confidence 5 356799999999999999999999999999987543 2345666789999999999999999999999999999
Q ss_pred HHHHhcC-CcEecHHHHHHHHHhccCCCCCCCCCC
Q 001926 961 NWALSTG-RFVVHPGWVEASALLYRRANEQDFAIK 994 (995)
Q Consensus 961 ~~Alk~G-I~IVSPdWLedC~~~~kRvDEsdYlL~ 994 (995)
.+|...+ ++||++.||+.|...|.+++|..|.+.
T Consensus 497 ~~a~~~~~~~Vv~~~wl~~~~e~w~~v~ek~~~l~ 531 (635)
T KOG0323|consen 497 YKAVVSGSAKVVNAAWLWRSLEKWGKVEEKLEPLD 531 (635)
T ss_pred eccccccceeEechhHHHHHHHHhcchhccccccc
Confidence 9999876 999999999999999999999999863
No 2
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=6.6e-34 Score=281.84 Aligned_cols=155 Identities=43% Similarity=0.704 Sum_probs=127.5
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhccceEEE
Q 001926 676 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHL 755 (995)
Q Consensus 676 LLs~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~YEIvI 755 (995)
|+..+|++||||||||||||+....... .+.+...+......++...|.+....+|+++|||+.+||+++++.||++|
T Consensus 1 ~~~~~kl~LVLDLDeTLihs~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I 78 (156)
T TIGR02250 1 LLREKKLHLVLDLDQTLIHTTKDPTLSE--WEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHV 78 (156)
T ss_pred CCcCCceEEEEeCCCCcccccccCccch--hhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEE
Confidence 5788999999999999999986443221 11111111111112344566666678999999999999999999999999
Q ss_pred EcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEcCCCcccccCccccccc
Q 001926 756 YTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVV 834 (995)
Q Consensus 756 FTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s~VVIVDDsp~vw~~qpdNgI~I 834 (995)
||++.+.||++|++.|||.+.+|++|+++|++|. | .++|||++++|++ ++||||||++.+|..|++|+|+|
T Consensus 79 ~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~----~----~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i 150 (156)
T TIGR02250 79 YTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESG----S----PHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQI 150 (156)
T ss_pred EeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCC----C----CccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEe
Confidence 9999999999999999999999999999999874 2 5789998789988 99999999999999999999999
Q ss_pred cceeec
Q 001926 835 ERYTYF 840 (995)
Q Consensus 835 kpY~yF 840 (995)
+||.||
T Consensus 151 ~~~~~f 156 (156)
T TIGR02250 151 EPYNYF 156 (156)
T ss_pred CCcccC
Confidence 999997
No 3
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=8.3e-34 Score=301.82 Aligned_cols=172 Identities=31% Similarity=0.423 Sum_probs=143.8
Q ss_pred hhhcCCCeEEEEeCCCceeeccc-CCCCCCchhhhhhhhhccccCCCcceeEEec--cceEEEeecccHHHHHHHHhccc
Q 001926 675 KMFSARKLCLVLDLDHTLLNSAK-FHEVDPVHDEILRKKEEQDREKPHRHLFRFP--HMGMWTKLRPGIWTFLERASKLF 751 (995)
Q Consensus 675 ~LLs~kKLTLVLDLDETLVHSs~-~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~--~~~~yVKLRPgL~EFLeeLSk~Y 751 (995)
++...+|+||||||||||||++. ++...+ .+.. ..+.++ ...+||.+||||++||+.++++|
T Consensus 83 ~~~~~~kk~lVLDLDeTLvHss~~~~~~~~-~d~~--------------~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~ 147 (262)
T KOG1605|consen 83 RLATVGRKTLVLDLDETLVHSSLNLKPIVN-ADFT--------------VPVEIDGHIHQVYVRKRPHVDEFLSRVSKWY 147 (262)
T ss_pred ccccCCCceEEEeCCCcccccccccCCCCC-ccee--------------eeeeeCCcceEEEEEcCCCHHHHHHHhHHHH
Confidence 34478999999999999999984 221111 0111 112222 24689999999999999999999
Q ss_pred eEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEcCCCcccccCccc
Q 001926 752 EMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLN 830 (995)
Q Consensus 752 EIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s~VVIVDDsp~vw~~qpdN 830 (995)
|++||||+.+.||++|+++|||.+.+|.+|+| |++|+ ..+| .|+|||. ++|++ ++||||||+|.+|..||+|
T Consensus 148 e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~Rly-R~~C~-~~~g----~yvKdls-~~~~dL~~viIiDNsP~sy~~~p~N 220 (262)
T KOG1605|consen 148 ELVLFTASLEVYADPLLDILDPDRKIISHRLY-RDSCT-LKDG----NYVKDLS-VLGRDLSKVIIVDNSPQSYRLQPEN 220 (262)
T ss_pred HHHHHHhhhHHHHHHHHHHccCCCCeeeeeec-ccceE-eECC----cEEEEcc-eeccCcccEEEEcCChHHhccCccC
Confidence 99999999999999999999998889999987 77775 4555 6999998 78999 8999999999999999999
Q ss_pred cccccceeeccCcccccCCCCCCcccccccCccchhhhHHHHHHHHHHHhhccccCCCCcchhHHHHHH
Q 001926 831 LIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 899 (995)
Q Consensus 831 gI~IkpY~yF~~s~~q~g~p~pSl~Ei~~DedpeD~eLl~LL~fLe~IHq~FF~~~~L~~~DVR~ILke 899 (995)
+|+|++|. .++.|.+|++|++||++|.. ..|||++|+.
T Consensus 221 gIpI~sw~----------------------~d~~D~eLL~LlpfLe~L~~---------~~Dvr~~l~~ 258 (262)
T KOG1605|consen 221 GIPIKSWF----------------------DDPTDTELLKLLPFLEALAF---------VDDVRPILAR 258 (262)
T ss_pred CCcccccc----------------------cCCChHHHHHHHHHHHHhcc---------cccHHHHHHH
Confidence 99999997 26789999999999999974 5899999975
No 4
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.97 E-value=3.6e-30 Score=255.37 Aligned_cols=158 Identities=29% Similarity=0.346 Sum_probs=127.9
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhccceEEEEcCCc
Q 001926 681 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGN 760 (995)
Q Consensus 681 KLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~YEIvIFTAGt 760 (995)
|++||||||||||||... +... ..+ ......+......+||++|||+.+||++|+++|||+|||++.
T Consensus 1 k~~lvlDLDeTLi~~~~~----~~~~-------~~~--~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~ 67 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFK----MPKV-------DAD--FKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASL 67 (162)
T ss_pred CcEEEEcCCCCcCCCCCC----CCCC-------CCc--eEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCc
Confidence 689999999999999742 1100 000 000001111235789999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEcCCCcccccCccccccccceee
Q 001926 761 KLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTY 839 (995)
Q Consensus 761 keYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s~VVIVDDsp~vw~~qpdNgI~IkpY~y 839 (995)
+.||++|++.|||.+.+|.++++ |++|.. .+| .+.|||+ .+|++ +++|||||++..|..++.|+|+|.+|.+
T Consensus 68 ~~yA~~il~~ldp~~~~f~~~l~-r~~~~~-~~~----~~~K~L~-~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~~ 140 (162)
T TIGR02251 68 EEYADPVLDILDRGGKVISRRLY-RESCVF-TNG----KYVKDLS-LVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWFG 140 (162)
T ss_pred HHHHHHHHHHHCcCCCEEeEEEE-ccccEE-eCC----CEEeEch-hcCCChhhEEEEeCChhhhccCccCEeecCCCCC
Confidence 99999999999999889998765 777743 233 4899999 68998 9999999999999999999999999973
Q ss_pred ccCcccccCCCCCCcccccccCccchhhhHHHHHHHHHHHh
Q 001926 840 FPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHK 880 (995)
Q Consensus 840 F~~s~~q~g~p~pSl~Ei~~DedpeD~eLl~LL~fLe~IHq 880 (995)
+.+|.+|..|+++|+.|..
T Consensus 141 ----------------------~~~D~~L~~l~~~L~~l~~ 159 (162)
T TIGR02251 141 ----------------------DPNDTELLNLIPFLEGLRF 159 (162)
T ss_pred ----------------------CCCHHHHHHHHHHHHHHhc
Confidence 4689999999999999985
No 5
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.96 E-value=8.5e-30 Score=247.66 Aligned_cols=157 Identities=39% Similarity=0.512 Sum_probs=113.8
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhccceEEEEcCCch
Q 001926 682 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNK 761 (995)
Q Consensus 682 LTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~YEIvIFTAGtk 761 (995)
++|||||||||||+...... +. + ........+++|++|||+++||++++++|||+|||++++
T Consensus 1 k~LVlDLD~TLv~~~~~~~~-~~-----------~------~~~~~~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~ 62 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPL-PY-----------D------FKIIDQRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASE 62 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCT-T------------S------EEEETEEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-H
T ss_pred CEEEEeCCCcEEEEeecCCC-Cc-----------c------cceeccccceeEeeCchHHHHHHHHHHhceEEEEEeehh
Confidence 68999999999999853211 00 0 000002346899999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEcCCCcccccCccccccccceeec
Q 001926 762 LYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYF 840 (995)
Q Consensus 762 eYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s~VVIVDDsp~vw~~qpdNgI~IkpY~yF 840 (995)
.||.+|++.|||++.+|.+++ +|++|.. ..+ .++|||+ .+|++ ++||||||++.+|..++.|+|+|++|..
T Consensus 63 ~ya~~v~~~ldp~~~~~~~~~-~r~~~~~-~~~----~~~KdL~-~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~~- 134 (159)
T PF03031_consen 63 EYAEPVLDALDPNGKLFSRRL-YRDDCTF-DKG----SYIKDLS-KLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFFG- 134 (159)
T ss_dssp HHHHHHHHHHTTTTSSEEEEE-EGGGSEE-ETT----EEE--GG-GSSS-GGGEEEEES-GGGGTTSGGGEEE----SS-
T ss_pred hhhhHHHHhhhhhcccccccc-ccccccc-ccc----ccccchH-HHhhccccEEEEeCCHHHeeccCCceEEeccccC-
Confidence 999999999999888998765 5777742 222 3589999 56887 9999999999999999999999999862
Q ss_pred cCcccccCCCCCCcccccccCc-cchhhhHHHHHHHHHHHhhccccCCCCcchhH
Q 001926 841 PCSRRQFGLLGPSLLEIDHDER-SEDGTLASSLGVIERLHKIFFSHQSLDDVDVR 894 (995)
Q Consensus 841 ~~s~~q~g~p~pSl~Ei~~Ded-peD~eLl~LL~fLe~IHq~FF~~~~L~~~DVR 894 (995)
+ ++|.+|..++++|+.|+. .+|||
T Consensus 135 ---------------------~~~~D~~L~~l~~~L~~l~~---------~~Dvr 159 (159)
T PF03031_consen 135 ---------------------DTPNDRELLRLLPFLEELAK---------EDDVR 159 (159)
T ss_dssp ---------------------CHTT--HHHHHHHHHHHHHT---------HS-CH
T ss_pred ---------------------CCcchhHHHHHHHHHHHhCc---------ccCCC
Confidence 3 679999999999999985 57887
No 6
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.95 E-value=1.2e-27 Score=245.83 Aligned_cols=166 Identities=17% Similarity=0.144 Sum_probs=127.8
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhccceEEE
Q 001926 676 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHL 755 (995)
Q Consensus 676 LLs~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~YEIvI 755 (995)
....+|++|||||||||||+.. +. ...|+.+||||++||+.|+++|||+|
T Consensus 16 ~~~~~kklLVLDLDeTLvh~~~-----~~-------------------------~~~~~~kRP~l~eFL~~~~~~feIvV 65 (195)
T TIGR02245 16 PPREGKKLLVLDIDYTLFDHRS-----PA-------------------------ETGEELMRPYLHEFLTSAYEDYDIVI 65 (195)
T ss_pred CCCCCCcEEEEeCCCceEcccc-----cC-------------------------CCceEEeCCCHHHHHHHHHhCCEEEE
Confidence 3457899999999999999742 10 02477899999999999999999999
Q ss_pred EcCCchHHHHHHHHHHcCCCc-eeeceEEecCCCCCCC--CCCCCCCcccccccc---cCC--C-CcEEEEcCCCccccc
Q 001926 756 YTMGNKLYATEMAKVLDPKGV-LFAGRVISRGDDGDPF--DGDERVPKSKDLEGV---LGM--E-SAVVIIDDSVRVWPH 826 (995)
Q Consensus 756 FTAGtkeYAd~VLdiLDP~g~-lF~~RIySRddc~~~~--dG~er~~yiKDLsrV---LGr--d-s~VVIVDDsp~vw~~ 826 (995)
|||+.+.||+.+++.|++.+. .+..+++ +++|+... .-.....++|||+.+ +|+ + +++|||||++.++..
T Consensus 66 wTAa~~~ya~~~l~~l~~~~~~~~~i~~~-ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~~~ 144 (195)
T TIGR02245 66 WSATSMKWIEIKMTELGVLTNPNYKITFL-LDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNFLM 144 (195)
T ss_pred EecCCHHHHHHHHHHhcccCCccceEEEE-eccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHHhc
Confidence 999999999999999976432 2333333 56663210 000111359999965 233 5 799999999999999
Q ss_pred CccccccccceeeccCcccccCCCCCCcccccccCccchhhhHHHHHHHHHHHhhccccCCCCcchhHHHHHH
Q 001926 827 NKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 899 (995)
Q Consensus 827 qpdNgI~IkpY~yF~~s~~q~g~p~pSl~Ei~~DedpeD~eLl~LL~fLe~IHq~FF~~~~L~~~DVR~ILke 899 (995)
||.|||+|++|.+- ..++++|.+|..|+++|+.|+. .+|||.++..
T Consensus 145 ~P~N~i~I~~f~~~------------------~~~~~~D~eL~~L~~yL~~la~---------~~Dvr~~~~~ 190 (195)
T TIGR02245 145 NPQNGLKIRPFKKA------------------HANRGTDQELLKLTQYLKTIAE---------LEDFSSLDHK 190 (195)
T ss_pred CCCCccccCCcccc------------------CCCCcccHHHHHHHHHHHHHhc---------Ccccchhhhc
Confidence 99999999999631 1135789999999999999985 7999999864
No 7
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.88 E-value=1.2e-22 Score=222.25 Aligned_cols=159 Identities=25% Similarity=0.411 Sum_probs=139.6
Q ss_pred hcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhccceEEEE
Q 001926 677 FSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLY 756 (995)
Q Consensus 677 Ls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~YEIvIF 756 (995)
..+.++||||||.++|||..+- + ..++.+++|||++.||..++++|||+||
T Consensus 185 y~Qp~yTLVleledvLVhpdws--------------------------~---~tGwRf~kRPgvD~FL~~~a~~yEIVi~ 235 (393)
T KOG2832|consen 185 YEQPPYTLVLELEDVLVHPDWS--------------------------Y---KTGWRFKKRPGVDYFLGHLAKYYEIVVY 235 (393)
T ss_pred ccCCCceEEEEeeeeEeccchh--------------------------h---hcCceeccCchHHHHHHhhcccceEEEE
Confidence 4578899999999999998641 0 0357799999999999999999999999
Q ss_pred cCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEcCCCcccccCcccccccc
Q 001926 757 TMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVE 835 (995)
Q Consensus 757 TAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s~VVIVDDsp~vw~~qpdNgI~Ik 835 (995)
|.....||.+|++.|||.| ++.+|+| |++ +...+| +++|||+ .|+|| ++||+||-.+..+..||+|.|.++
T Consensus 236 sse~gmt~~pl~d~lDP~g-~IsYkLf-r~~-t~y~~G----~HvKdls-~LNRdl~kVivVd~d~~~~~l~P~N~l~l~ 307 (393)
T KOG2832|consen 236 SSEQGMTVFPLLDALDPKG-YISYKLF-RGA-TKYEEG----HHVKDLS-KLNRDLQKVIVVDFDANSYKLQPENMLPLE 307 (393)
T ss_pred ecCCccchhhhHhhcCCcc-eEEEEEe-cCc-ccccCc----cchhhhh-hhccccceeEEEEccccccccCcccccccC
Confidence 9999999999999999997 7899998 554 455666 7899999 69999 999999999999999999999999
Q ss_pred ceeeccCcccccCCCCCCcccccccCccchhhhHHHHHHHHHHHhhccccCCCCcchhHHHHHHHH
Q 001926 836 RYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQ 901 (995)
Q Consensus 836 pY~yF~~s~~q~g~p~pSl~Ei~~DedpeD~eLl~LL~fLe~IHq~FF~~~~L~~~DVR~ILkeiQ 901 (995)
+|.. +++|..|.+|++||+.||+ -+.+|||++|..+.
T Consensus 308 ~W~G----------------------n~dDt~L~dL~~FL~~ia~-------~~~eDvR~vL~~y~ 344 (393)
T KOG2832|consen 308 PWSG----------------------NDDDTSLFDLLAFLEYIAQ-------QQVEDVRPVLQSYS 344 (393)
T ss_pred cCCC----------------------CcccchhhhHHHHHHHHHH-------ccHHHHHHHHHHhc
Confidence 9973 5678899999999999997 25899999998654
No 8
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.84 E-value=8.1e-21 Score=185.14 Aligned_cols=144 Identities=38% Similarity=0.525 Sum_probs=112.0
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhccceEEEEcCC
Q 001926 680 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMG 759 (995)
Q Consensus 680 kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~YEIvIFTAG 759 (995)
||++|||||||||||+..-+.. ++ .....+-...+......+++++|||+.+||++|.+.|+|+|||++
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~-----~~------~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~ 69 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFK-----EW------TNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAG 69 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCC-----CC------CccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCC
Confidence 6899999999999999641111 01 000111112222233568899999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEcCCCcccccCcccccccccee
Q 001926 760 NKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYT 838 (995)
Q Consensus 760 tkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s~VVIVDDsp~vw~~qpdNgI~IkpY~ 838 (995)
.+.||+.+++.||+.+.+|. +++++++|.. .++ .|.|+|+ .+|.+ +.+|+|||++..|..++.|+|.|++|.
T Consensus 70 ~~~~~~~il~~l~~~~~~f~-~i~~~~d~~~-~KP----~~~k~l~-~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~ 142 (148)
T smart00577 70 LRMYADPVLDLLDPKKYFGY-RRLFRDECVF-VKG----KYVKDLS-LLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWF 142 (148)
T ss_pred cHHHHHHHHHHhCcCCCEee-eEEECccccc-cCC----eEeecHH-HcCCChhcEEEEECCHHHhhcCccCEEEecCcC
Confidence 99999999999999764555 6888888743 233 3889998 57887 999999999999999999999999998
Q ss_pred ecc
Q 001926 839 YFP 841 (995)
Q Consensus 839 yF~ 841 (995)
++.
T Consensus 143 ~~~ 145 (148)
T smart00577 143 GDP 145 (148)
T ss_pred CCC
Confidence 754
No 9
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.80 E-value=5.8e-20 Score=204.98 Aligned_cols=179 Identities=30% Similarity=0.384 Sum_probs=141.9
Q ss_pred hHHHhhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhc
Q 001926 670 LEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK 749 (995)
Q Consensus 670 L~~q~~LLs~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk 749 (995)
+..+..--...+.+|++|||+||+|+.... + ...+ ++... ........+||..||++++||..+++
T Consensus 201 l~~~~~~~~~~~k~L~l~lde~l~~S~~~~-~-~~~d-f~~~~-----------e~~~~~~~~~v~kRp~l~~fl~~ls~ 266 (390)
T COG5190 201 LEPPVSKSTSPKKTLVLDLDETLVHSSFRY-I-TLLD-FLVKV-----------EISLLQHLVYVSKRPELDYFLGKLSK 266 (390)
T ss_pred ccchhhcCCCCccccccCCCccceeecccc-c-cccc-hhhcc-----------ccccceeEEEEcCChHHHHHHhhhhh
Confidence 333333345678899999999999998521 1 1111 11100 01111256899999999999999999
Q ss_pred cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEcCCCcccccCc
Q 001926 750 LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNK 828 (995)
Q Consensus 750 ~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s~VVIVDDsp~vw~~qp 828 (995)
+|++++||++.+.||++|+++||+.+ .|++|+| |.+|. ...| .|+|||. .++++ ..+||||+++..|..+|
T Consensus 267 ~~~l~~ft~s~~~y~~~v~d~l~~~k-~~~~~lf-r~sc~-~~~G----~~ikDis-~i~r~l~~viiId~~p~SY~~~p 338 (390)
T COG5190 267 IHELVYFTASVKRYADPVLDILDSDK-VFSHRLF-RESCV-SYLG----VYIKDIS-KIGRSLDKVIIIDNSPASYEFHP 338 (390)
T ss_pred hEEEEEEecchhhhcchHHHhccccc-eeehhhh-cccce-eccC----chhhhHH-hhccCCCceEEeeCChhhhhhCc
Confidence 99999999999999999999999998 8999988 55564 4555 5999999 68898 99999999999999999
Q ss_pred cccccccceeeccCcccccCCCCCCcccccccCccchhhhHHHHHHHHHHHhhccccCCCCcchhHHHHHH
Q 001926 829 LNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA 899 (995)
Q Consensus 829 dNgI~IkpY~yF~~s~~q~g~p~pSl~Ei~~DedpeD~eLl~LL~fLe~IHq~FF~~~~L~~~DVR~ILke 899 (995)
.|+|+|.+|.. ++.|.+|.++++||+.|-. -+..||+.+|..
T Consensus 339 ~~~i~i~~W~~----------------------d~~d~el~~ll~~le~L~~-------~~~~d~~~~l~~ 380 (390)
T COG5190 339 ENAIPIEKWIS----------------------DEHDDELLNLLPFLEDLPD-------RDLKDVSSILQS 380 (390)
T ss_pred cceeccCcccc----------------------cccchhhhhhccccccccc-------ccchhhhhhhhh
Confidence 99999999972 4678999999999999974 247899998864
No 10
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.50 E-value=3.6e-14 Score=159.03 Aligned_cols=271 Identities=25% Similarity=0.403 Sum_probs=184.5
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchh-hhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhccceE
Q 001926 675 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHD-EILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEM 753 (995)
Q Consensus 675 ~LLs~kKLTLVLDLDETLVHSs~~~eldP~~~-eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~YEI 753 (995)
.+-..+++.||+|+|.|.+|+.... .+|... +.+. ..........+......+++++||++..|+...++.||+
T Consensus 20 ~l~q~~~~~l~~~~~~~~~h~~~~~-~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~ 94 (390)
T COG5190 20 ALRQDKKLILVVDLDQTIIHTTVDP-NDPNNVNQSLE----RTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLYEL 94 (390)
T ss_pred HhhcCcccccccccccceecccccC-CCCCchhhhhh----ccccchhccccccccccceeeecccccchhhhhchhcce
Confidence 4456789999999999999998533 222211 0000 000000000111223568999999999999999999999
Q ss_pred EEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEcCCCccc---ccCcc
Q 001926 754 HLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVW---PHNKL 829 (995)
Q Consensus 754 vIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s~VVIVDDsp~vw---~~qpd 829 (995)
++||+|++.||..+++++||.|.+|..|+..++.... ...|-+++++..+ ..+||+||++++| ..+ .
T Consensus 95 ~~~~~~~~~~~~~~~~i~d~~g~~~~d~~~~~~~~~~--------~~~~s~~~l~p~~~n~~vi~~d~~~~~~~~d~~-~ 165 (390)
T COG5190 95 HIYTMGTRAYAERIAKIIDPTGKLFNDRILSRDESGS--------LSQKSLSRLFPKDQNMVVIIDDRGDVWGVGDMN-S 165 (390)
T ss_pred eeEeeccccchhhhhhccccccccccccccccccccc--------chhhhhhhcCccccccccccccccccCCccchh-h
Confidence 9999999999999999999999999999998875421 4578888888888 8999999999999 444 6
Q ss_pred ccccccceeeccCccc----------ccCCCC---------------C------------Cccc--------ccccCc--
Q 001926 830 NLIVVERYTYFPCSRR----------QFGLLG---------------P------------SLLE--------IDHDER-- 862 (995)
Q Consensus 830 NgI~IkpY~yF~~s~~----------q~g~p~---------------p------------Sl~E--------i~~Ded-- 862 (995)
|.+...++..+..... .....+ + |.+. ...+..
T Consensus 166 ~~v~~~~~~~~~~~~~i~d~~~~~~~~~r~~~~~~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~ 245 (390)
T COG5190 166 NFVAKSPFSKYESDKDIVDLPRLERKLSREAGIDTLEPPVSKSTSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLL 245 (390)
T ss_pred hhhcccccccccccccccCcccccchhhhhcccccccchhhcCCCCccccccCCCccceeeccccccccchhhccccccc
Confidence 8888888543332110 000000 0 0000 011112
Q ss_pred ------cchhhhHHHHHHHHHHHhhccccCC--CCcchhHHHHHHHHHhhccCceeEeeecccCCCCCCCChhHHHHHHH
Q 001926 863 ------SEDGTLASSLGVIERLHKIFFSHQS--LDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQ 934 (995)
Q Consensus 863 ------peD~eLl~LL~fLe~IHq~FF~~~~--L~~~DVR~ILkeiQrkILsGCvIvFSG~~P~~~~~pe~~~LwklAe~ 934 (995)
..|.+|..++..|.++|.-+|-... .....|..+|.... +|++|..-++++++.+. ....|. .
T Consensus 246 ~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k--~~~~~lfr~sc~~~~G~---~ikDis----~ 316 (390)
T COG5190 246 QHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADPVLDILDSDK--VFSHRLFRESCVSYLGV---YIKDIS----K 316 (390)
T ss_pred eeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcchHHHhccccc--eeehhhhcccceeccCc---hhhhHH----h
Confidence 2467899999999999987766432 22455888888766 99999999998876542 111222 2
Q ss_pred hCCEEecccCCCccEEEecCCCCHHHHHHHhcCCcEecHHHHHH
Q 001926 935 FGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEA 978 (995)
Q Consensus 935 LGAtVs~dvd~~VTHLVAss~gTeKv~~Alk~GI~IVSPdWLed 978 (995)
.| ..-.-||+|+.++.+- +....+.|+.+.|+.+
T Consensus 317 i~------r~l~~viiId~~p~SY----~~~p~~~i~i~~W~~d 350 (390)
T COG5190 317 IG------RSLDKVIIIDNSPASY----EFHPENAIPIEKWISD 350 (390)
T ss_pred hc------cCCCceEEeeCChhhh----hhCccceeccCccccc
Confidence 22 2335699999887544 5566789999999998
No 11
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.42 E-value=2.6e-13 Score=114.99 Aligned_cols=63 Identities=27% Similarity=0.330 Sum_probs=53.9
Q ss_pred ceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhcCCcEecHHH
Q 001926 908 CRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGW 975 (995)
Q Consensus 908 CvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~gTeKv~~Alk~GI~IVSPdW 975 (995)
|+|||||+.+. ++..|+++++.+||.|..+++.+||||||....++||++|+++||+||+++|
T Consensus 1 ~~i~~sg~~~~-----~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGK-----ERSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TT-----TCCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHH-----HHHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 68999998653 4678999999999999999999999999999999999999999999999999
No 12
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.35 E-value=1.7e-12 Score=111.05 Aligned_cols=75 Identities=25% Similarity=0.450 Sum_probs=67.1
Q ss_pred HHhhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCC--CCHHHHHHHhcCCcEecHHHHHH
Q 001926 901 QRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSL--GTDKVNWALSTGRFVVHPGWVEA 978 (995)
Q Consensus 901 QrkILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~--gTeKv~~Alk~GI~IVSPdWLed 978 (995)
+.++|+||.|+++++ ....+..+.++++.+||++...+++.+||||+... .+.|+..|...|++||+++||.+
T Consensus 2 ~~~~F~g~~f~i~~~-----~~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ 76 (78)
T PF00533_consen 2 KPKIFEGCTFCISGF-----DSDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIED 76 (78)
T ss_dssp STTTTTTEEEEESST-----SSSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHH
T ss_pred CCCCCCCEEEEEccC-----CCCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHH
Confidence 357899999999654 23456789999999999999999999999999987 89999999999999999999999
Q ss_pred HH
Q 001926 979 SA 980 (995)
Q Consensus 979 C~ 980 (995)
|+
T Consensus 77 ci 78 (78)
T PF00533_consen 77 CI 78 (78)
T ss_dssp HH
T ss_pred hC
Confidence 96
No 13
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=99.29 E-value=1.7e-12 Score=142.80 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=83.5
Q ss_pred HhhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhcCCcEecHHHHHHHHH
Q 001926 902 RKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASAL 981 (995)
Q Consensus 902 rkILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~gTeKv~~Alk~GI~IVSPdWLedC~~ 981 (995)
.++|.|+++|+||| .+|++..|+..|..|||+|..+++.++|||||+..+|.||++.+.+|-.||+-+||++|..
T Consensus 315 ~klL~GVV~VlSGf-----qNP~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV~g~Gg~IV~keWI~~Cy~ 389 (508)
T KOG3226|consen 315 SKLLEGVVFVLSGF-----QNPERSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQVEGNGGTIVSKEWITECYA 389 (508)
T ss_pred HHhhhceEEEEecc-----cCchHHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhcccCCceEeeHHHHHHHHH
Confidence 56899999999998 4788999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCC
Q 001926 982 LYRRANEQDFAI 993 (995)
Q Consensus 982 ~~kRvDEsdYlL 993 (995)
..+++|...|+|
T Consensus 390 ~kk~lp~rrYlm 401 (508)
T KOG3226|consen 390 QKKLLPIRRYLM 401 (508)
T ss_pred HHhhccHHHHHh
Confidence 999999999987
No 14
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.19 E-value=5.3e-11 Score=99.51 Aligned_cols=77 Identities=22% Similarity=0.287 Sum_probs=65.1
Q ss_pred hhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCC-CccEEEecCCCCHH--HHHHHhcCCcEecHHHHHHH
Q 001926 903 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDD-QVTHVVANSLGTDK--VNWALSTGRFVVHPGWVEAS 979 (995)
Q Consensus 903 kILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~-~VTHLVAss~gTeK--v~~Alk~GI~IVSPdWLedC 979 (995)
.+|+||+|||+|-+ ..+.+..+++++..+||++...++. .+||+|+......+ +..|...+++||+++||.+|
T Consensus 1 ~~f~g~~~~~~g~~----~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~ 76 (80)
T smart00292 1 KLFKGKVFVITGKF----DKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDC 76 (80)
T ss_pred CccCCeEEEEeCCC----CCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHH
Confidence 37999999999922 2345678999999999999999999 99999999865544 57788899999999999999
Q ss_pred HHhc
Q 001926 980 ALLY 983 (995)
Q Consensus 980 ~~~~ 983 (995)
+..+
T Consensus 77 ~~~~ 80 (80)
T smart00292 77 LKAG 80 (80)
T ss_pred HHCc
Confidence 8753
No 15
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=99.17 E-value=8.7e-11 Score=96.09 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=62.5
Q ss_pred CceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHH-HHHHHhcCCcEecHHHHHHHHH
Q 001926 907 GCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDK-VNWALSTGRFVVHPGWVEASAL 981 (995)
Q Consensus 907 GCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~gTeK-v~~Alk~GI~IVSPdWLedC~~ 981 (995)
||.|+|+|..+ ...+..+.+++..+||++...++..+||||+......+ +..|...|++||+++||.+|+.
T Consensus 1 ~~~~~i~g~~~----~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLP----SEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCC----CcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHhC
Confidence 78999999764 23567899999999999999999999999999876665 8888999999999999999963
No 16
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=98.47 E-value=2.2e-07 Score=113.20 Aligned_cols=87 Identities=20% Similarity=0.255 Sum_probs=77.2
Q ss_pred HHhhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCC-----CCHHHHHHHhcCCcEecHHH
Q 001926 901 QRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSL-----GTDKVNWALSTGRFVVHPGW 975 (995)
Q Consensus 901 QrkILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~-----gTeKv~~Alk~GI~IVSPdW 975 (995)
..++|.|++|||+|.++. .+..+.++++.+||+++..+ ..+||+|++.. ++.|+.+|++.||+||+.+|
T Consensus 186 ~~kpL~G~~fviTGtl~~-----sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~ 259 (815)
T PLN03122 186 PGKPFSGMMISLSGRLSR-----THQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAW 259 (815)
T ss_pred cCCCcCCcEEEEeCCCCC-----CHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHHcCCcCccHHH
Confidence 456899999999998753 35688999999999999999 77889999872 35899999999999999999
Q ss_pred HHHHHHhccCCCCCCCCC
Q 001926 976 VEASALLYRRANEQDFAI 993 (995)
Q Consensus 976 LedC~~~~kRvDEsdYlL 993 (995)
|.+|+...+.+++..|.+
T Consensus 260 L~d~i~~~k~~~~~~y~l 277 (815)
T PLN03122 260 LIDSIEKQEAQPLEAYDV 277 (815)
T ss_pred HHHHHhcCCcccchhhhh
Confidence 999999999999999987
No 17
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=98.41 E-value=3.2e-07 Score=113.72 Aligned_cols=88 Identities=8% Similarity=0.072 Sum_probs=77.4
Q ss_pred HHhhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecC---CCCHHHHHHHhcCCcEecHHHHH
Q 001926 901 QRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS---LGTDKVNWALSTGRFVVHPGWVE 977 (995)
Q Consensus 901 QrkILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss---~gTeKv~~Alk~GI~IVSPdWLe 977 (995)
..++|.|++|+++|-++. ....+.++++.+||++..+++..|||||+.. ....|+++|.+.||+||+.+||.
T Consensus 390 ~~~~l~~~~i~i~G~~~~-----~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ 464 (981)
T PLN03123 390 ESEFLGDLKVSIVGASKE-----KVTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLV 464 (981)
T ss_pred cCCCcCCeEEEEecCCCC-----cHHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHH
Confidence 457899999999998753 2246778899999999999999999999985 45678999999999999999999
Q ss_pred HHHHhccCCCCCCCCC
Q 001926 978 ASALLYRRANEQDFAI 993 (995)
Q Consensus 978 dC~~~~kRvDEsdYlL 993 (995)
+|.....++++..|.+
T Consensus 465 ds~~~~~~~p~~~y~~ 480 (981)
T PLN03123 465 DCFKKKKKLPFDKYKL 480 (981)
T ss_pred HHHhccccCcchhhhh
Confidence 9999999999998865
No 18
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=98.17 E-value=1.6e-06 Score=105.51 Aligned_cols=100 Identities=12% Similarity=0.097 Sum_probs=88.1
Q ss_pred chhHHHHHHHHHhhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecC-CCCHHHHHHHhcCCc
Q 001926 891 VDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS-LGTDKVNWALSTGRF 969 (995)
Q Consensus 891 ~DVR~ILkeiQrkILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss-~gTeKv~~Alk~GI~ 969 (995)
.+.+..-..++-.+|.||+||.+|+- ..+++++..++-.+||++...++..|+|++... ..++||++|++|+++
T Consensus 90 ~~~~~l~~~~~~p~~~~~~Vc~tgl~-----~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~al~wn~~ 164 (811)
T KOG1929|consen 90 RLLDPLRDTMKCPGFFGLKVCLTGLS-----GDEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQALKWNIP 164 (811)
T ss_pred ccCccchhhhcCCcccceEEEecccc-----hHHHHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHHHhhCCc
Confidence 34555667788999999999999973 346789999999999999999999998888876 566999999999999
Q ss_pred EecHHHHHHHHHhccCCCCCCCCCCC
Q 001926 970 VVHPGWVEASALLYRRANEQDFAIKP 995 (995)
Q Consensus 970 IVSPdWLedC~~~~kRvDEsdYlL~p 995 (995)
||+.+|+++|+.....+++..|.+.|
T Consensus 165 v~~~~w~~~s~~~~~~~~~~~~e~~~ 190 (811)
T KOG1929|consen 165 VVSDDWLFDSIEKTAVLETKPYEGAP 190 (811)
T ss_pred cccHHHHhhhhccccccccccccccc
Confidence 99999999999999999999998764
No 19
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=97.86 E-value=6.6e-06 Score=100.32 Aligned_cols=97 Identities=20% Similarity=0.201 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHhhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhcCCcEe
Q 001926 892 DVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVV 971 (995)
Q Consensus 892 DVR~ILkeiQrkILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~gTeKv~~Alk~GI~IV 971 (995)
-+|.+....=.++|.||.|++++. +.+++..+...+..+||.....|....|||||++....|+..|.+|+++||
T Consensus 481 ~~~~vp~~~l~~~~e~~~~~~s~~-----~~~~~e~ln~~~~~~gas~~~~f~r~~~~l~~~~~k~s~~~~~~kw~ip~v 555 (811)
T KOG1929|consen 481 NLRPVPAAALSQPFENLTISNSQS-----AEAEREKLNNLANDLGASNVKTFTRKSTTLLTTSAKGSKYEIAGKWSIPIV 555 (811)
T ss_pred hcCcchhhcccccccCceEEeeec-----hHHHHHHHhHhhhhccccccceeeecccEEeccccccchhhhccccCCCcc
Confidence 356777777788999999999974 234556677889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhccCCCCCCCCC
Q 001926 972 HPGWVEASALLYRRANEQDFAI 993 (995)
Q Consensus 972 SPdWLedC~~~~kRvDEsdYlL 993 (995)
+++||++|.++.+..++..|++
T Consensus 556 T~~wL~e~~rq~~~~~~e~~l~ 577 (811)
T KOG1929|consen 556 TPDWLYECVRQNKGERNEGFLN 577 (811)
T ss_pred ChhHHHhhccccCcccceeecc
Confidence 9999999999999999998876
No 20
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.80 E-value=5.2e-05 Score=75.50 Aligned_cols=135 Identities=19% Similarity=0.168 Sum_probs=89.8
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhc-cceEEEEcCCch
Q 001926 683 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGNK 761 (995)
Q Consensus 683 TLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk-~YEIvIFTAGtk 761 (995)
.+|||+|+||+.....+.+.|....+-. ..+ .+..+.-|.++|++.+||++++. -|-+..+|+...
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~rVs~------------n~i-~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~ 68 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRRVSS------------NTI-EDSKGREVHLFPDVKETLKWARNSGYILGLASWNFE 68 (164)
T ss_pred cEEEeCCCcccccccchhcCCcceecCc------------cce-ecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCch
Confidence 4899999999988766666664322110 000 12346789999999999999986 488899999999
Q ss_pred HHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCccccccccc---CC---CCcEEEEcCCCccccc---Cccccc
Q 001926 762 LYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL---GM---ESAVVIIDDSVRVWPH---NKLNLI 832 (995)
Q Consensus 762 eYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVL---Gr---ds~VVIVDDsp~vw~~---qpdNgI 832 (995)
.-|-+++..||-.. ||.+-++ +.+. +++. +..+=|+.+- +. ++++|++||+..-+.. ..+|+-
T Consensus 69 ~kA~~aLral~~~~-yFhy~Vi-ePhP---~K~~---ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe~~G~V~ 140 (164)
T COG4996 69 DKAIKALRALDLLQ-YFHYIVI-EPHP---YKFL---MLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWEYLGNVK 140 (164)
T ss_pred HHHHHHHHHhchhh-hEEEEEe-cCCC---hhHH---HHHHHHHHHHHhhccccCcceEEEEecccccHHHHHHhcCCee
Confidence 99999999999986 8987555 3331 2221 1112222110 11 2789999999854432 245666
Q ss_pred ccccee
Q 001926 833 VVERYT 838 (995)
Q Consensus 833 ~IkpY~ 838 (995)
.|+.|.
T Consensus 141 ~~~~~~ 146 (164)
T COG4996 141 CLEMWK 146 (164)
T ss_pred eeEeec
Confidence 666664
No 21
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.75 E-value=8.1e-05 Score=90.04 Aligned_cols=73 Identities=12% Similarity=0.073 Sum_probs=65.4
Q ss_pred hhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhcCCcEecHHHHHHH
Q 001926 903 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEAS 979 (995)
Q Consensus 903 kILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~gTeKv~~Alk~GI~IVSPdWLedC 979 (995)
.+|.|.++||||.++. ..+..+.++++.+||++...+++++++|||....+.|..+|.+.||+|++.+.+.+-
T Consensus 592 ~~l~gktfV~TG~l~~----~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~~LGI~Ii~e~~f~~~ 664 (669)
T PRK14350 592 SFLFGKKFCITGSFNG----YSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKANNLGIKIMSLFDIKSY 664 (669)
T ss_pred CccCCcEEEEecccCC----CCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHHHcCCEEecHHHHHHH
Confidence 4699999999998754 246789999999999999999999999999987779999999999999999888764
No 22
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=97.74 E-value=1.5e-05 Score=95.22 Aligned_cols=251 Identities=29% Similarity=0.324 Sum_probs=150.1
Q ss_pred CCCCcccCceecccCCCcccccccccccC--CCCCCccccCCCCCCCCCCCcccchhhhccCCCCCCcccccccCC----
Q 001926 493 SKPMDELGKVRMKPRDPRRVLHGNALQRS--GSLGPEFKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQSVLQ---- 566 (995)
Q Consensus 493 ~~~~~~~~~~rmkprdprr~lh~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---- 566 (995)
-+|..++|++++|++|++|.-+.-.-+-. .......+.... ...++-+..|++..-.+..++.+-.--...
T Consensus 377 ~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~~~~---~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~ 453 (635)
T KOG0323|consen 377 NAPEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFAKYD---EVEETLESPDVRLLIPELRTKVLKGSQIVFSGLH 453 (635)
T ss_pred cchhhcccccccccccccccchhHHHHhhhhcccchhhhhccc---cccccccCCChhhhhhhhhhHHhhccceeecccc
Confidence 34568899999999999997543222111 111111111111 122333335555554444433332222222
Q ss_pred CchhhHHhhcccccccccccCccCCCCCCcCCCCCCCCCCcccccccccccccCCCcCCCCCCCCCCC-CCCCCCCCccc
Q 001926 567 PDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSGADMKAVVTNHDDKQTGTGSGPEAG-PVGAHPQSAWG 645 (995)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~ 645 (995)
|....+++ +|++-++|+.....+. .+....-+.. ..+........... .+++..+. ......+..|+
T Consensus 454 P~~~~~~~------s~~~~~~~~~g~vs~~----~~~~~~th~i-~~~~gt~k~~~a~~-~~~~~Vv~~~wl~~~~e~w~ 521 (635)
T KOG0323|consen 454 PTGSTDES------ADILGVAQQLGAVSAP----DVSDKTTHLI-AANAGTKKVYKAVV-SGSAKVVNAAWLWRSLEKWG 521 (635)
T ss_pred cCcCCcch------hhhhhhhhcccceecc----cccchhhhHH-hhccCcceeecccc-ccceeEechhHHHHHHHHhc
Confidence 33333333 6777777665522221 0111111100 12222222222222 22244444 66788889999
Q ss_pred CcchhhcCCchhhhhHhhHHHHhhhHHHhhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeE
Q 001926 646 DVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLF 725 (995)
Q Consensus 646 ~f~~L~~g~~~~q~~~i~ke~akrL~~q~~LLs~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF 725 (995)
..++.+..+.+.+++.+.++.-.+...+.++.. .++.++.++|++++-+..+..++-....++...++.....++..++
T Consensus 522 ~v~ek~~~l~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~d~~~~~~~~~l~ 600 (635)
T KOG0323|consen 522 KVEEKLEPLDDDQRAAIRRESLARLYEQEKVFP-PKLSLVAPLDNELQESGKENEVNSRTELLDETGEDVSSEPPDRHLE 600 (635)
T ss_pred chhcccccccccccchhcccchhhhhhhhcccc-hhhhccCccchhhhhccccchhcccchhhccccCcccCCCCCccch
Confidence 999999999999998888887777777777777 8999999999999988765444444444555555555555666777
Q ss_pred EeccceEEEeecccHHHHHHHHhccceEEEEcCCchHHHH
Q 001926 726 RFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYAT 765 (995)
Q Consensus 726 ~~~~~~~yVKLRPgL~EFLeeLSk~YEIvIFTAGtkeYAd 765 (995)
+...++.+++.+ ++..+..|+..-||++.+.||.
T Consensus 601 ~~~~~~~~~~~~------~~~~~~~~~~~~~~s~~~~~~~ 634 (635)
T KOG0323|consen 601 RELPSSMWIKLL------LEKASKLYELHLYTSGNKHRAE 634 (635)
T ss_pred hhccccCccccc------hhhhhhHHHhccCCcccccccC
Confidence 777778888888 8889999999999999988764
No 23
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=97.62 E-value=0.00019 Score=86.99 Aligned_cols=74 Identities=19% Similarity=0.100 Sum_probs=65.6
Q ss_pred hccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhcCCcEecHHHHHHHHH
Q 001926 904 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASAL 981 (995)
Q Consensus 904 ILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~gTeKv~~Alk~GI~IVSPdWLedC~~ 981 (995)
.|.|.++||||.+.. -.+..+..+++.+||+++..++++++.|||....+.|..+|.+.||+|++.+.+.+.+.
T Consensus 590 ~~~g~~~v~TG~l~~----~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~~kA~~lgI~ii~E~~f~~~l~ 663 (665)
T PRK07956 590 DLAGKTVVLTGTLEQ----LSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKLAKAQELGIEVLDEEEFLRLLG 663 (665)
T ss_pred CccccEEEEeCCCCC----CCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHHHHHHHcCCeEEcHHHHHHHHh
Confidence 389999999998753 23678999999999999999999999999998777999999999999999988887654
No 24
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=97.60 E-value=2.1e-05 Score=93.43 Aligned_cols=81 Identities=20% Similarity=0.355 Sum_probs=70.1
Q ss_pred hhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhcCCcEecHHHHHHHHHh
Q 001926 903 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALL 982 (995)
Q Consensus 903 kILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~gTeKv~~Alk~GI~IVSPdWLedC~~~ 982 (995)
..|+|++.||+|+.+.. ..+..+++.|||.|..+...++||+||+..+++|+..|+-. .+++.|+||.+|
T Consensus 117 ~~m~~vvlcfTg~rkk~------e~lv~lvh~mgg~irkd~nsktthli~n~s~gek~~~a~t~-~~~~rp~wv~~a--- 186 (850)
T KOG3524|consen 117 ELMKDVVMCFTGERKKK------EELVDLVHYMGGSIRKDTNSKTTHLIANKVEGEKQSIALVG-VPTMRPDWVTEA--- 186 (850)
T ss_pred hhhcCceeeeeccchhh------HHHHHHHHHhcceeEeeeccCceEEEeecccceEEEEEeec-cceechHhhhhh---
Confidence 37999999999986541 27999999999999999999999999999999999888776 999999999999
Q ss_pred ccCCCCCCCCC
Q 001926 983 YRRANEQDFAI 993 (995)
Q Consensus 983 ~kRvDEsdYlL 993 (995)
|++.++..|.+
T Consensus 187 w~~rn~~yfda 197 (850)
T KOG3524|consen 187 WKHRNDSYFDA 197 (850)
T ss_pred hcCcchhhhhh
Confidence 66666665543
No 25
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.59 E-value=0.0003 Score=85.56 Aligned_cols=75 Identities=15% Similarity=0.036 Sum_probs=65.4
Q ss_pred hccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCC-HHHHHHHhcCCcEecHHHHHHHHHh
Q 001926 904 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGT-DKVNWALSTGRFVVHPGWVEASALL 982 (995)
Q Consensus 904 ILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~gT-eKv~~Alk~GI~IVSPdWLedC~~~ 982 (995)
.|.|.++||||.+.. -.+..+.++++.+||++...++++++.||+....+ .|..+|.+.||+|++.+.+.+-+..
T Consensus 609 ~l~g~~~v~TG~l~~----~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f~~ll~~ 684 (689)
T PRK14351 609 ALDGLTFVFTGSLSG----YTRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEANDVPTLDEEEFEELLAE 684 (689)
T ss_pred CCCCcEEEEccCCCC----CCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHHCCCeEecHHHHHHHHHh
Confidence 599999999998753 24678999999999999999999999999987545 7999999999999999888776553
No 26
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=97.56 E-value=0.00018 Score=79.92 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=62.5
Q ss_pred hccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCC--HHHHHHHhcCCcEecHHHHHHHH
Q 001926 904 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGT--DKVNWALSTGRFVVHPGWVEASA 980 (995)
Q Consensus 904 ILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~gT--eKv~~Alk~GI~IVSPdWLedC~ 980 (995)
+|.|.+|||||-+.. .+.+++++++.+||+|...++++++.|||....+ .|.++|.+.||+|++.+=+.+-+
T Consensus 232 l~~g~~~v~TG~l~~-----~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~ll 305 (313)
T PRK06063 232 LVQGMRVALSAEVSR-----THEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLELL 305 (313)
T ss_pred ccCCCEEEEecCCCC-----CHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHHHH
Confidence 479999999998742 4678999999999999999999999999997544 79999999999999987666543
No 27
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.56 E-value=0.00013 Score=66.04 Aligned_cols=63 Identities=24% Similarity=0.208 Sum_probs=50.3
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhcc-ceEEEEcCCch
Q 001926 683 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMGNK 761 (995)
Q Consensus 683 TLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~-YEIvIFTAGtk 761 (995)
++|||+|+||+........ ...+.++|++.+||+++.+. +.++|+|++.+
T Consensus 1 ~~vfD~D~tl~~~~~~~~~-----------------------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~ 51 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE-----------------------------IEELELYPGVKEALKELKEKGIKLALATNKSR 51 (139)
T ss_pred CeEEccCCceEccCccccc-----------------------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchH
Confidence 4899999999987531000 12356899999999999986 99999999999
Q ss_pred HHHHHHHHHHcCC
Q 001926 762 LYATEMAKVLDPK 774 (995)
Q Consensus 762 eYAd~VLdiLDP~ 774 (995)
.++..+++.+.-.
T Consensus 52 ~~~~~~~~~~~~~ 64 (139)
T cd01427 52 REVLELLEELGLD 64 (139)
T ss_pred HHHHHHHHHcCCc
Confidence 9999999887543
No 28
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.00035 Score=83.86 Aligned_cols=73 Identities=19% Similarity=0.112 Sum_probs=65.0
Q ss_pred hhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhcCCcEecHHHHHHH
Q 001926 903 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEAS 979 (995)
Q Consensus 903 kILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~gTeKv~~Alk~GI~IVSPdWLedC 979 (995)
.+|.|.++||||.++. -.+.....+++.+||+++..+++++..||+...-+.|+.+|.+.||+|.+.+|+.+-
T Consensus 593 ~~l~gkt~V~TGtL~~----~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~eLgv~i~~E~~~~~l 665 (667)
T COG0272 593 SPLAGKTFVLTGTLEG----MSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQELGVKIIDEEEFLAL 665 (667)
T ss_pred cccCCCEEEEeccCCC----CCHHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHHHcCCeEecHHHHHHh
Confidence 4699999999998763 245678899999999999999999999999998888999999999999999888653
No 29
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=97.42 E-value=0.00038 Score=76.91 Aligned_cols=71 Identities=11% Similarity=0.079 Sum_probs=60.1
Q ss_pred hccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecC---------CCCHHHHHHHhc-----CCc
Q 001926 904 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS---------LGTDKVNWALST-----GRF 969 (995)
Q Consensus 904 ILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss---------~gTeKv~~Alk~-----GI~ 969 (995)
.|.|.++||||.+.. -.+..+.++++.+||+|...+++++++||+.. ..+.|+++|.+. ||+
T Consensus 220 ~l~g~~~vfTG~l~~----~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ 295 (309)
T PRK06195 220 AFKEEVVVFTGGLAS----MTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIK 295 (309)
T ss_pred cccCCEEEEccccCC----CCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcE
Confidence 699999999998743 24678999999999999999999999999984 346899999886 999
Q ss_pred EecHHHHHH
Q 001926 970 VVHPGWVEA 978 (995)
Q Consensus 970 IVSPdWLed 978 (995)
|++.+=+.+
T Consensus 296 ii~E~~f~~ 304 (309)
T PRK06195 296 FLNEEEFLQ 304 (309)
T ss_pred EecHHHHHH
Confidence 999754443
No 30
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.39 E-value=0.00026 Score=72.75 Aligned_cols=138 Identities=14% Similarity=0.053 Sum_probs=80.7
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhc-cceEEEEcCC-
Q 001926 682 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG- 759 (995)
Q Consensus 682 LTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk-~YEIvIFTAG- 759 (995)
..+|+|||.||+.....+- +...+... .+.. -......+.-+.++||+.++|+.+.+ -+.+.|.|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~------~~~~-~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~ 71 (174)
T TIGR01685 3 RVIVFDLDGTLWDHYMISL----LGGPFKPV------KQNN-SIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWND 71 (174)
T ss_pred cEEEEeCCCCCcCcccccc----cCCCceec------cCCC-CeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCC
Confidence 3589999999997765321 11111100 0100 00111233467889999999999975 5999999988
Q ss_pred chHHHHHHHHHHcCC--C------ceeeceEEecCCCCCCCCCCCCCCccccccccc--CCC-CcEEEEcCCCcccccCc
Q 001926 760 NKLYATEMAKVLDPK--G------VLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL--GME-SAVVIIDDSVRVWPHNK 828 (995)
Q Consensus 760 tkeYAd~VLdiLDP~--g------~lF~~RIySRddc~~~~dG~er~~yiKDLsrVL--Grd-s~VVIVDDsp~vw~~qp 828 (995)
...|+..+++.++-. | .+|.. +++-++. ...+.. ....+.+...+ |.. +.+|+|||++.-...-.
T Consensus 72 ~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~-iv~~~~~-~~~kp~--~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~ 147 (174)
T TIGR01685 72 VPEWAYEILGTFEITYAGKTVPMHSLFDD-RIEIYKP-NKAKQL--EMILQKVNKVDPSVLKPAQILFFDDRTDNVREVW 147 (174)
T ss_pred ChHHHHHHHHhCCcCCCCCcccHHHhcee-eeeccCC-chHHHH--HHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHH
Confidence 999999999998854 2 46765 3332221 000000 00112222222 355 89999999996654434
Q ss_pred cccccc
Q 001926 829 LNLIVV 834 (995)
Q Consensus 829 dNgI~I 834 (995)
.+++.+
T Consensus 148 ~aGi~~ 153 (174)
T TIGR01685 148 GYGVTS 153 (174)
T ss_pred HhCCEE
Confidence 455543
No 31
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=97.38 E-value=0.00014 Score=88.78 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=63.8
Q ss_pred hhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCC-cc-------------------------EEEecC-C
Q 001926 903 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQ-VT-------------------------HVVANS-L 955 (995)
Q Consensus 903 kILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~-VT-------------------------HLVAss-~ 955 (995)
.||.||+++|++.+-. ...+....+.+||.+....-.. .+ -||+-. .
T Consensus 924 niFd~cvF~lTsa~~s------d~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~ 997 (1176)
T KOG3548|consen 924 NIFDGCVFMLTSANRS------DSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHY 997 (1176)
T ss_pred chhcceeEEEeccccc------hhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhhh
Confidence 5999999999996432 3345555666777775443211 11 233322 4
Q ss_pred CCHHHHHHHhcCCcEecHHHHHHHHHhccCCCCCCCCC
Q 001926 956 GTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAI 993 (995)
Q Consensus 956 gTeKv~~Alk~GI~IVSPdWLedC~~~~kRvDEsdYlL 993 (995)
++-||..|++.||++||+.||.+|+..++.+|-.+|+|
T Consensus 998 Rt~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YLL 1035 (1176)
T KOG3548|consen 998 RTHKYLEALARGIPCVHNTFIQACGEQNRCVDYTDYLL 1035 (1176)
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHhccccccchhhcc
Confidence 68899999999999999999999999999999999987
No 32
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=97.37 E-value=0.00014 Score=70.33 Aligned_cols=80 Identities=15% Similarity=0.059 Sum_probs=53.7
Q ss_pred eecccHHHHHHHHhc-cceEEEEcCC-chHHHHHHHHHHcCC------CceeeceEEecCCCCCCCCCCCCCCccccccc
Q 001926 735 KLRPGIWTFLERASK-LFEMHLYTMG-NKLYATEMAKVLDPK------GVLFAGRVISRGDDGDPFDGDERVPKSKDLEG 806 (995)
Q Consensus 735 KLRPgL~EFLeeLSk-~YEIvIFTAG-tkeYAd~VLdiLDP~------g~lF~~RIySRddc~~~~dG~er~~yiKDLsr 806 (995)
++.||+.++|+++.+ .+.++|.|++ .+.|+..+++.+.+. ..+|.. ++..++. -+ ...+.+-+.
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~-~~~~~~~---pk---p~~~~~a~~- 100 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDP-LTIGYWL---PK---SPRLVEIAL- 100 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhh-hhhcCCC---cH---HHHHHHHHH-
Confidence 578999999999975 6999999999 999999999887621 123433 2211110 01 112333343
Q ss_pred ccC--CC-CcEEEEcCCCc
Q 001926 807 VLG--ME-SAVVIIDDSVR 822 (995)
Q Consensus 807 VLG--rd-s~VVIVDDsp~ 822 (995)
.+| .. +.+|+|||++.
T Consensus 101 ~lg~~~~p~~~l~igDs~~ 119 (128)
T TIGR01681 101 KLNGVLKPKSILFVDDRPD 119 (128)
T ss_pred HhcCCCCcceEEEECCCHh
Confidence 467 66 89999999964
No 33
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=97.19 E-value=0.00076 Score=74.85 Aligned_cols=74 Identities=24% Similarity=0.357 Sum_probs=59.8
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeec-ccHHHHHHHHhcc-ceE
Q 001926 676 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLR-PGIWTFLERASKL-FEM 753 (995)
Q Consensus 676 LLs~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLR-PgL~EFLeeLSk~-YEI 753 (995)
+.-.....+|+|||+||+.... -|.+| |++.++|+++.+. +.+
T Consensus 121 ~~~~~~kvIvFDLDgTLi~~~~-----------------------------------~v~irdPgV~EaL~~LkekGikL 165 (301)
T TIGR01684 121 KVFEPPHVVVFDLDSTLITDEE-----------------------------------PVRIRDPRIYDSLTELKKRGCIL 165 (301)
T ss_pred cccccceEEEEecCCCCcCCCC-----------------------------------ccccCCHHHHHHHHHHHHCCCEE
Confidence 4456677999999999997631 13468 9999999999986 899
Q ss_pred EEEcCCchHHHHHHHHHHcCCCceeeceEEecC
Q 001926 754 HLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 786 (995)
Q Consensus 754 vIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRd 786 (995)
+|+|.+.++++..+++.++-.+ +|. .+++.+
T Consensus 166 aIaTS~~Re~v~~~L~~lGLd~-YFd-vIIs~G 196 (301)
T TIGR01684 166 VLWSYGDRDHVVESMRKVKLDR-YFD-IIISGG 196 (301)
T ss_pred EEEECCCHHHHHHHHHHcCCCc-ccC-EEEECC
Confidence 9999999999999999998875 674 355544
No 34
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=97.18 E-value=0.00063 Score=82.38 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=61.0
Q ss_pred hhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhcCCcEecHHH
Q 001926 903 KILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGW 975 (995)
Q Consensus 903 kILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~gTeKv~~Alk~GI~IVSPdW 975 (995)
..|.|..+||||.+.. ..+..+.++++.+||++...++.+++.||+....+.|+.+|.+.||+|++.+.
T Consensus 583 ~~l~gk~~v~TG~l~~----~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~~lgi~ii~E~~ 651 (652)
T TIGR00575 583 SPLAGKTFVLTGTLSQ----MSRDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQELGIPIINEEE 651 (652)
T ss_pred CCccCcEEEEeccCCC----CCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHHHcCCcEechhh
Confidence 4699999999998753 24678999999999999999999999999998666799999999999998764
No 35
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.07 E-value=0.00081 Score=69.19 Aligned_cols=121 Identities=20% Similarity=0.217 Sum_probs=65.1
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhc-cceEEEEc-C
Q 001926 681 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYT-M 758 (995)
Q Consensus 681 KLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk-~YEIvIFT-A 758 (995)
...+|+|||.||+.......+.|..... ... .-..+..+.-|++-|++.+.|+++.. -.+|.|-+ +
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~----------~~~--~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt 70 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKI----------SNG--NVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRT 70 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-----------TTS----EEETT--EE---TTHHHHHHHHHHCT--EEEEE--
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceec----------CCC--CEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECC
Confidence 3578999999999876543333321100 000 01123356678999999999999986 58999998 5
Q ss_pred CchHHHHHHHHHHcCC---------CceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEcCCCc
Q 001926 759 GNKLYATEMAKVLDPK---------GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVR 822 (995)
Q Consensus 759 GtkeYAd~VLdiLDP~---------g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s~VVIVDDsp~ 822 (995)
..+++|.++|+.|+-. ..+|.+--+... + ...+.+.|.+-.|-+ +.+|++||...
T Consensus 71 ~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g-s--------K~~Hf~~i~~~tgI~y~eMlFFDDe~~ 135 (169)
T PF12689_consen 71 DEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG-S--------KTTHFRRIHRKTGIPYEEMLFFDDESR 135 (169)
T ss_dssp S-HHHHHHHHHHTT-C----------CCECEEEESSS----------HHHHHHHHHHHH---GGGEEEEES-HH
T ss_pred CChHHHHHHHHhcCCCccccccccchhhcchhheecC-c--------hHHHHHHHHHhcCCChhHEEEecCchh
Confidence 7899999999998866 124544222222 1 012445555556777 88999999864
No 36
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.06 E-value=0.0011 Score=73.76 Aligned_cols=75 Identities=23% Similarity=0.353 Sum_probs=60.0
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeec-ccHHHHHHHHhcc-ce
Q 001926 675 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLR-PGIWTFLERASKL-FE 752 (995)
Q Consensus 675 ~LLs~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLR-PgL~EFLeeLSk~-YE 752 (995)
.+.-..+..+|+|||+||+.... -|.+| |++.++|+++.+. +.
T Consensus 122 ~~~~~~~~~i~~D~D~TL~~~~~-----------------------------------~v~irdp~V~EtL~eLkekGik 166 (303)
T PHA03398 122 SLVWEIPHVIVFDLDSTLITDEE-----------------------------------PVRIRDPFVYDSLDELKERGCV 166 (303)
T ss_pred eeEeeeccEEEEecCCCccCCCC-----------------------------------ccccCChhHHHHHHHHHHCCCE
Confidence 34556778999999999997631 13468 9999999999975 89
Q ss_pred EEEEcCCchHHHHHHHHHHcCCCceeeceEEecC
Q 001926 753 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 786 (995)
Q Consensus 753 IvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRd 786 (995)
+.|+|+|.++++..+++.++-.+ +|.. +++.+
T Consensus 167 LaIvTNg~Re~v~~~Le~lgL~~-yFDv-II~~g 198 (303)
T PHA03398 167 LVLWSYGNREHVVHSLKETKLEG-YFDI-IICGG 198 (303)
T ss_pred EEEEcCCChHHHHHHHHHcCCCc-cccE-EEECC
Confidence 99999999999999999988764 6653 55443
No 37
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=97.05 E-value=0.0014 Score=79.69 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=67.5
Q ss_pred HHhhccCceeE-eeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEe--cCCCCHHHHHHHhcCCcEecHHHHH
Q 001926 901 QRKILAGCRIV-FSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVA--NSLGTDKVNWALSTGRFVVHPGWVE 977 (995)
Q Consensus 901 QrkILsGCvIv-FSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVA--ss~gTeKv~~Alk~GI~IVSPdWLe 977 (995)
+-.+|.|..+| ++|. ...+.++.|.+++..+||++...+.+.+||.|+ ....+.+-.+|+++++-||+|+||.
T Consensus 630 ~s~if~gl~f~Vlsgt----~~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wll 705 (881)
T KOG0966|consen 630 ISNIFDGLEFCVLSGT----SETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLL 705 (881)
T ss_pred hhhhhcCeeEEEecCC----cccccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHhccCceeeHHHHH
Confidence 34599999985 4443 222335789999999999999999999999997 3455666667888899999999999
Q ss_pred HHHHhccCCCCCC
Q 001926 978 ASALLYRRANEQD 990 (995)
Q Consensus 978 dC~~~~kRvDEsd 990 (995)
+|+...+.++-..
T Consensus 706 dcc~~~~l~p~~P 718 (881)
T KOG0966|consen 706 DCCKKQRLLPWLP 718 (881)
T ss_pred HHHhhhhcccccc
Confidence 9999887666443
No 38
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.99 E-value=0.00096 Score=83.03 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=65.8
Q ss_pred ceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecC-CCCHHHHHHHhcCCcEecHHHHHHHHHhccCC
Q 001926 908 CRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS-LGTDKVNWALSTGRFVVHPGWVEASALLYRRA 986 (995)
Q Consensus 908 CvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss-~gTeKv~~Alk~GI~IVSPdWLedC~~~~kRv 986 (995)
..+.|+++.- ...+...+..+|+.|... ..+.||+|+.+ .+|.|+..|+..|++||+++||.+|...+..+
T Consensus 660 ~~~lfs~~~~-------~~~~k~~~k~lg~s~~ss-~~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~ 731 (896)
T KOG2043|consen 660 IEVLFSDKND-------GKNYKLAKKFLGGSVASS-DSEATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKL 731 (896)
T ss_pred eeeeeeeccC-------chhhhhHHhhccceeecc-cccceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhccccc
Confidence 6677888632 233566778888888854 46899999987 57999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 001926 987 NEQDFAIK 994 (995)
Q Consensus 987 DEsdYlL~ 994 (995)
||..|.+.
T Consensus 732 dek~yil~ 739 (896)
T KOG2043|consen 732 DEKPYILH 739 (896)
T ss_pred cCcccccc
Confidence 99999873
No 39
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=96.94 E-value=0.003 Score=60.11 Aligned_cols=101 Identities=17% Similarity=0.086 Sum_probs=64.5
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhcc-ceEEEEcCCc
Q 001926 682 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMGN 760 (995)
Q Consensus 682 LTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~-YEIvIFTAGt 760 (995)
..|+||+|+||++... ..++. -+..+.|++.++|+++.+. |.++|.|++.
T Consensus 1 k~~~~D~dgtL~~~~~--~~~~~---------------------------~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVP--YVDDE---------------------------DERILYPEVPDALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred CEEEEeCCCceecCCC--CCCCH---------------------------HHheeCCCHHHHHHHHHHCCCEEEEEECCc
Confidence 3689999999996421 01110 1245789999999999755 9999999999
Q ss_pred --------hHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCccccccccc-CCC-CcEEEEcCC
Q 001926 761 --------KLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL-GME-SAVVIIDDS 820 (995)
Q Consensus 761 --------keYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVL-Grd-s~VVIVDDs 820 (995)
..++..+++.++-. ++. ++....+ .++. ...+.+-++ .+ +.+ +++|+|+|+
T Consensus 52 ~~~~~~~~~~~~~~~l~~~~l~--~~~--~~~~~~~---~KP~-~~~~~~~~~-~~~~~~~~~~v~IGD~ 112 (132)
T TIGR01662 52 GIGRGKFSSGRVARRLEELGVP--IDV--LYACPHC---RKPK-PGMFLEALK-RFNEIDPEESVYVGDQ 112 (132)
T ss_pred cccccHHHHHHHHHHHHHCCCC--EEE--EEECCCC---CCCC-hHHHHHHHH-HcCCCChhheEEEcCC
Confidence 88888899888643 222 2222211 1221 112333333 45 365 889999994
No 40
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=96.67 E-value=0.0022 Score=70.76 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=67.3
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhcc-ceEEEEcC
Q 001926 680 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTM 758 (995)
Q Consensus 680 kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~-YEIvIFTA 758 (995)
.+++||||||+||+..... + +. + .-+. +....|++.++|+.+.+. +.+.|.|.
T Consensus 2 ~~k~~v~DlDnTlw~gv~~---e---~g------------~--~~i~------~~~~~~~~~e~L~~L~~~Gi~lai~S~ 55 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLG---E---DG------------I--DNLN------LSPLHKTLQEKIKTLKKQGFLLALASK 55 (320)
T ss_pred CeEEEEEcCCCCCCCCEEc---c---CC------------c--cccc------cCccHHHHHHHHHHHHhCCCEEEEEcC
Confidence 4689999999999976421 0 00 0 0000 123478999999999854 89999999
Q ss_pred CchHHHHHHHHH----HcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEcCCCc
Q 001926 759 GNKLYATEMAKV----LDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVR 822 (995)
Q Consensus 759 GtkeYAd~VLdi----LDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s~VVIVDDsp~ 822 (995)
..+.+|..+++. +.... +|..-... ... ++ ..++-+...+|-. ..+|+|||++.
T Consensus 56 n~~~~a~~~l~~~~~~~~~~~-~f~~~~~~----~~p-k~----~~i~~~~~~l~i~~~~~vfidD~~~ 114 (320)
T TIGR01686 56 NDEDDAKKVFERRKDFILQAE-DFDARSIN----WGP-KS----ESLRKIAKKLNLGTDSFLFIDDNPA 114 (320)
T ss_pred CCHHHHHHHHHhCccccCcHH-HeeEEEEe----cCc-hH----HHHHHHHHHhCCCcCcEEEECCCHH
Confidence 999999999987 54432 45431111 110 00 1122222235655 78999999984
No 41
>COG5275 BRCT domain type II [General function prediction only]
Probab=96.64 E-value=0.0049 Score=65.78 Aligned_cols=80 Identities=14% Similarity=0.104 Sum_probs=67.1
Q ss_pred HHHHHHhhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecC-CCCHHHHHHHhcCCcEecHHH
Q 001926 897 LAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS-LGTDKVNWALSTGRFVVHPGW 975 (995)
Q Consensus 897 LkeiQrkILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss-~gTeKv~~Alk~GI~IVSPdW 975 (995)
..+..+.+|+|.+|+|+|+++-- .+.....++..+||.|....+.++|.||+.. .|..|++.+++.+|+.+..+-
T Consensus 149 ~peg~~~cL~G~~fVfTG~l~Tl----sR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKqlkIkaidEeg 224 (276)
T COG5275 149 VPEGERECLKGKVFVFTGDLKTL----SRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEG 224 (276)
T ss_pred CCCCCcccccccEEEEecccccc----cchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHhCCccccHHH
Confidence 34567889999999999998632 3456778899999999999999999999987 677899999999999999887
Q ss_pred HHHHH
Q 001926 976 VEASA 980 (995)
Q Consensus 976 LedC~ 980 (995)
+..-+
T Consensus 225 f~~LI 229 (276)
T COG5275 225 FDSLI 229 (276)
T ss_pred HHHHH
Confidence 76543
No 42
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=96.63 E-value=0.0021 Score=77.53 Aligned_cols=78 Identities=27% Similarity=0.352 Sum_probs=65.6
Q ss_pred ceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecC------CCCHHHHHHHhcCCcEecHHHHHHHHH
Q 001926 908 CRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANS------LGTDKVNWALSTGRFVVHPGWVEASAL 981 (995)
Q Consensus 908 CvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss------~gTeKv~~Alk~GI~IVSPdWLedC~~ 981 (995)
.+.+.+|..|. +...+.+.|.. ++...+.+.|||+|++- .+|.|+..++..|.||++.+|+.+|+.
T Consensus 479 ~~~~~s~l~p~-----ek~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~k 550 (684)
T KOG4362|consen 479 LVLLVSGLTPS-----EKQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASLK 550 (684)
T ss_pred eeeeeccCCcc-----hHHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHHH
Confidence 34566776553 34566777766 78888889999999975 478999999999999999999999999
Q ss_pred hccCCCCCCCCC
Q 001926 982 LYRRANEQDFAI 993 (995)
Q Consensus 982 ~~kRvDEsdYlL 993 (995)
..+.++|..|.|
T Consensus 551 ~~~~~~eepfEl 562 (684)
T KOG4362|consen 551 LRKWVSEEPFEL 562 (684)
T ss_pred hcCCCCCCCeeE
Confidence 999999999987
No 43
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.61 E-value=0.0057 Score=61.89 Aligned_cols=108 Identities=13% Similarity=0.052 Sum_probs=67.1
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhc-cceEEEEcCC-
Q 001926 682 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG- 759 (995)
Q Consensus 682 LTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk-~YEIvIFTAG- 759 (995)
+.|.||.|+||++...+ .. ... ..-++++-||+.++|++|.+ -|.++|.|+.
T Consensus 2 ~~~~~d~dg~l~~~~~~----~~---------------------~~~-~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~ 55 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPS----DF---------------------QVD-ALEKLRFEKGVIPALLKLKKAGYKFVMVTNQD 55 (161)
T ss_pred CEEEEeCCCCccccCCC----cc---------------------ccC-CHHHeeECCCHHHHHHHHHHCCCeEEEEeCCc
Confidence 57999999999985321 00 000 00146778999999999986 4999999996
Q ss_pred --------------chHHHHHHHHHHcCCCceeeceEEe----cCCCCCCCCCCCCCCcccccccccCCC-CcEEEEcCC
Q 001926 760 --------------NKLYATEMAKVLDPKGVLFAGRVIS----RGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDS 820 (995)
Q Consensus 760 --------------tkeYAd~VLdiLDP~g~lF~~RIyS----Rddc~~~~dG~er~~yiKDLsrVLGrd-s~VVIVDDs 820 (995)
...|+..+++.++-. |...+++ .+++. ..++.. ..+..-++ .++.+ +++++|+|+
T Consensus 56 g~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~-~~KP~~-~~~~~~~~-~~~~~~~e~l~IGD~ 129 (161)
T TIGR01261 56 GLGTPSFPQADFDGPHNLMLQIFRSQGII---FDDVLICPHFPDDNCD-CRKPKI-KLLEPYLK-KNLIDKARSYVIGDR 129 (161)
T ss_pred cccCCcCCHHHHHHHHHHHHHHHHHCCCc---eeEEEECCCCCCCCCC-CCCCCH-HHHHHHHH-HcCCCHHHeEEEeCC
Confidence 366778888877764 6554454 23321 222210 01111122 34555 789999998
Q ss_pred C
Q 001926 821 V 821 (995)
Q Consensus 821 p 821 (995)
.
T Consensus 130 ~ 130 (161)
T TIGR01261 130 E 130 (161)
T ss_pred H
Confidence 4
No 44
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.37 E-value=0.0034 Score=67.66 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=83.1
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhcc-ceEEEE
Q 001926 678 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLY 756 (995)
Q Consensus 678 s~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~-YEIvIF 756 (995)
..++..+++|+|+||....... +. +|.. .....+.|++.++|+++.+. +.++|.
T Consensus 155 ~~~~~~~~~D~dgtl~~~~~~~---~~--~~~~--------------------~~~~~~~~~~~~~l~~l~~~g~~i~i~ 209 (300)
T PHA02530 155 PGLPKAVIFDIDGTLAKMGGRS---PY--DWTK--------------------VKEDKPNPMVVELVKMYKAAGYEIIVV 209 (300)
T ss_pred CCCCCEEEEECCCcCcCCCCCC---cc--chhh--------------------cccCCCChhHHHHHHHHHhCCCEEEEE
Confidence 4456899999999999764211 10 1110 01234699999999999765 899999
Q ss_pred cCCchHHHHHHHHHHcCCCceeeceEEecCC-------CCCCCCCCCCCCcccccccccCC-C-CcEEEEcCCCcccccC
Q 001926 757 TMGNKLYATEMAKVLDPKGVLFAGRVISRGD-------DGDPFDGDERVPKSKDLEGVLGM-E-SAVVIIDDSVRVWPHN 827 (995)
Q Consensus 757 TAGtkeYAd~VLdiLDP~g~lF~~RIySRdd-------c~~~~dG~er~~yiKDLsrVLGr-d-s~VVIVDDsp~vw~~q 827 (995)
|+....++..+++.|+..+.+|.. ++..+. +.. .+. +...+.+.|.+ ++. . +.+|+|||++.....-
T Consensus 210 T~r~~~~~~~~l~~l~~~~~~f~~-i~~~~~~~~~~~~~~~-~kp-~p~~~~~~l~~-~~~~~~~~~~~vgD~~~d~~~a 285 (300)
T PHA02530 210 SGRDGVCEEDTVEWLRQTDIWFDD-LIGRPPDMHFQREQGD-KRP-DDVVKEEIFWE-KIAPKYDVLLAVDDRDQVVDMW 285 (300)
T ss_pred eCCChhhHHHHHHHHHHcCCchhh-hhCCcchhhhcccCCC-CCC-cHHHHHHHHHH-HhccCceEEEEEcCcHHHHHHH
Confidence 999999999999999988767764 444441 111 011 01122334443 355 3 7899999998655443
Q ss_pred ccccccc
Q 001926 828 KLNLIVV 834 (995)
Q Consensus 828 pdNgI~I 834 (995)
..++|.+
T Consensus 286 ~~~Gi~~ 292 (300)
T PHA02530 286 RRIGLEC 292 (300)
T ss_pred HHhCCeE
Confidence 4555543
No 45
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=96.36 E-value=0.0056 Score=62.67 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=41.1
Q ss_pred EeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceE
Q 001926 734 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRV 782 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RI 782 (995)
+.++||+.+||+.+.+ .+.++|.|++...++..+++.+.-.. +|..++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~ 132 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRL 132 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEE
Confidence 5789999999999987 59999999999999999999876554 676544
No 46
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=96.31 E-value=0.0082 Score=59.26 Aligned_cols=49 Identities=16% Similarity=0.372 Sum_probs=40.3
Q ss_pred EeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCCceeeceEEe
Q 001926 734 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 784 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIyS 784 (995)
+.++|++.++|+.+.+. +.++|.|++...+++.+++.++-.. +|.. +++
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~-i~~ 120 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKD-VFIE-IYS 120 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChh-heeE-Eec
Confidence 68999999999999764 8999999999999999999876443 5543 443
No 47
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=96.25 E-value=0.012 Score=65.34 Aligned_cols=76 Identities=24% Similarity=0.341 Sum_probs=59.6
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhccc-eE
Q 001926 675 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLF-EM 753 (995)
Q Consensus 675 ~LLs~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~Y-EI 753 (995)
.+.-..+-++|+|||+|||.... + .+ ..-|.+.+.|.++.+.+ -+
T Consensus 116 ~~~~~~phVIVfDlD~TLItd~~-----~---------------------v~--------Ir~~~v~~sL~~Lk~~g~vL 161 (297)
T PF05152_consen 116 SLVWEPPHVIVFDLDSTLITDEG-----D---------------------VR--------IRDPAVYDSLRELKEQGCVL 161 (297)
T ss_pred hccCCCCcEEEEECCCcccccCC-----c---------------------cc--------cCChHHHHHHHHHHHcCCEE
Confidence 34556777999999999997642 0 00 02488899999999876 89
Q ss_pred EEEcCCchHHHHHHHHHHcCCCceeeceEEecC
Q 001926 754 HLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 786 (995)
Q Consensus 754 vIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRd 786 (995)
++|+.|.++|+..-++.++-.+ +|.- ++++.
T Consensus 162 vLWSyG~~eHV~~sl~~~~L~~-~Fd~-ii~~G 192 (297)
T PF05152_consen 162 VLWSYGNREHVRHSLKELKLEG-YFDI-IICGG 192 (297)
T ss_pred EEecCCCHHHHHHHHHHhCCcc-ccEE-EEeCC
Confidence 9999999999999999998775 7875 67654
No 48
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=96.23 E-value=0.0041 Score=72.77 Aligned_cols=80 Identities=23% Similarity=0.378 Sum_probs=63.9
Q ss_pred HhhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEeccc----------CCCccEEEecCCCC-HHHHHHHhcCCcE
Q 001926 902 RKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHI----------DDQVTHVVANSLGT-DKVNWALSTGRFV 970 (995)
Q Consensus 902 rkILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dv----------d~~VTHLVAss~gT-eKv~~Alk~GI~I 970 (995)
+.+|+||+++++.-+|. ..|.=+|..+||.|.++- +..+||=|+..++- .+| .|...
T Consensus 325 kslF~glkFfl~reVPr-------esL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v-----~gR~Y 392 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREVPR-------ESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTSV-----IGRTY 392 (570)
T ss_pred HHHhhcceeeeeccCch-------HHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCcccee-----eeeee
Confidence 45899999999987664 457777999999998872 34579999988751 122 47889
Q ss_pred ecHHHHHHHHHhccCCCCCCCCC
Q 001926 971 VHPGWVEASALLYRRANEQDFAI 993 (995)
Q Consensus 971 VSPdWLedC~~~~kRvDEsdYlL 993 (995)
|.|+||+||+.+..+++-..|..
T Consensus 393 vQPQWvfDsvNar~llpt~~Y~~ 415 (570)
T KOG2481|consen 393 VQPQWVFDSVNARLLLPTEKYFP 415 (570)
T ss_pred ecchhhhhhccchhhccHhhhCC
Confidence 99999999999999999888864
No 49
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=96.21 E-value=0.017 Score=56.74 Aligned_cols=66 Identities=18% Similarity=0.093 Sum_probs=46.7
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhc-cceEEEEcCCc
Q 001926 682 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGN 760 (995)
Q Consensus 682 LTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk-~YEIvIFTAGt 760 (995)
.+|+||+|+||+...... +. ..+ --+.+.||+.++|+.|.+ -|.++|.|++.
T Consensus 1 ~~~~~d~dgtl~~~~~~~-~~---~~~-----------------------~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~ 53 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSD-YP---RSL-----------------------DDWQLRPGAVPALLTLRAAGYTVVVVTNQS 53 (147)
T ss_pred CeEEEeCCCceeccCCcc-cC---CCH-----------------------HHeEEcCChHHHHHHHHHCCCEEEEEeCCC
Confidence 368999999999886310 00 000 013578999999999975 59999999987
Q ss_pred h---------------HHHHHHHHHHcCC
Q 001926 761 K---------------LYATEMAKVLDPK 774 (995)
Q Consensus 761 k---------------eYAd~VLdiLDP~ 774 (995)
+ .++..+++.++-.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 82 (147)
T TIGR01656 54 GIGRGYFSAEAFRAPNGRVLELLRQLGVA 82 (147)
T ss_pred cccCCcCCHHHHHHHHHHHHHHHHhCCCc
Confidence 4 5667777776543
No 50
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.15 E-value=0.02 Score=58.17 Aligned_cols=110 Identities=14% Similarity=0.108 Sum_probs=63.3
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHh-ccceEEEEcC
Q 001926 680 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS-KLFEMHLYTM 758 (995)
Q Consensus 680 kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLS-k~YEIvIFTA 758 (995)
++.+++||+|+||+-+.... ..+. .| .-|..+-||+.++|+++. +-|.++|.|+
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~-~~~~--------------~~----------~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN 66 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGK-VFPT--------------SA----------SDWRFLYPEIPAKLQELDDEGYKIVIFTN 66 (166)
T ss_pred cCcEEEEeCCCceEecCCCC-cccC--------------Ch----------HHeEEecCCHHHHHHHHHHCCCEEEEEeC
Confidence 34678999999999764210 0000 01 113345699999999996 5699999999
Q ss_pred CchH------------HHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccC--CC-CcEEEEcCCC
Q 001926 759 GNKL------------YATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG--ME-SAVVIIDDSV 821 (995)
Q Consensus 759 Gtke------------YAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLG--rd-s~VVIVDDsp 821 (995)
+... ++..+++.++-. + .-++.-+.. ...+.. ...+..-+. .+| .+ +.+|+|.|+.
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~l~~~gl~---~-~~ii~~~~~-~~~KP~-p~~~~~~~~-~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 67 QSGIGRGKLSAESFKNKIEAFLEKLKVP---I-QVLAATHAG-LYRKPM-TGMWEYLQS-QYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred CcccccCcccHHHHHHHHHHHHHHcCCC---E-EEEEecCCC-CCCCCc-cHHHHHHHH-HcCCCCCchhcEEEECCC
Confidence 8763 566677766643 2 123322221 111211 001112222 345 45 7899999986
No 51
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=96.14 E-value=0.0089 Score=64.45 Aligned_cols=99 Identities=10% Similarity=0.120 Sum_probs=57.9
Q ss_pred cCCCeEEEEeCCCceeecccCC--C---CCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhcc-c
Q 001926 678 SARKLCLVLDLDHTLLNSAKFH--E---VDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-F 751 (995)
Q Consensus 678 s~kKLTLVLDLDETLVHSs~~~--e---ldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~-Y 751 (995)
.++++.++|||||||+.+...- . .++..-.++. ..+....+. ....-.....|++.+||+++.+. +
T Consensus 60 ~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~-------g~~~w~~~~-~~~~~~s~p~~~a~elL~~l~~~G~ 131 (237)
T TIGR01672 60 GRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLK-------NQVFWEKVN-NGWDEFSIPKEVARQLIDMHQRRGD 131 (237)
T ss_pred CCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhc-------ChHHHHHHH-HhcccCCcchhHHHHHHHHHHHCCC
Confidence 4556799999999999997420 0 0110000000 000000000 00112234445599999999865 8
Q ss_pred eEEEEcCC----chHHHHHHHHHHcCCCceeeceEEecC
Q 001926 752 EMHLYTMG----NKLYATEMAKVLDPKGVLFAGRVISRG 786 (995)
Q Consensus 752 EIvIFTAG----tkeYAd~VLdiLDP~g~lF~~RIySRd 786 (995)
.|+|.|+. ...+++.+++.+.-.. +|. -++..+
T Consensus 132 ~i~iVTnr~~~k~~~~a~~ll~~lGi~~-~f~-~i~~~d 168 (237)
T TIGR01672 132 AIFFVTGRTPGKTDTVSKTLAKNFHIPA-MNP-VIFAGD 168 (237)
T ss_pred EEEEEeCCCCCcCHHHHHHHHHHhCCch-hee-EEECCC
Confidence 99999998 6779999999887654 564 355544
No 52
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.06 E-value=0.017 Score=58.35 Aligned_cols=107 Identities=13% Similarity=-0.001 Sum_probs=62.0
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhcc-ceEEEEcCC
Q 001926 681 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMG 759 (995)
Q Consensus 681 KLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~-YEIvIFTAG 759 (995)
.+.|+||+|+||+-... .. .+. .. .+.+.||+.++|++|.+. |.++|.|++
T Consensus 3 ~~~~~~d~~~t~~~~~~-----~~-~~~---------------------~~-~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~ 54 (181)
T PRK08942 3 MKAIFLDRDGVINVDSD-----GY-VKS---------------------PD-EWIPIPGSIEAIARLKQAGYRVVVATNQ 54 (181)
T ss_pred ccEEEEECCCCcccCCc-----cc-cCC---------------------HH-HeEECCCHHHHHHHHHHCCCEEEEEeCC
Confidence 46799999999875431 10 000 00 245789999999999875 999999998
Q ss_pred ch---------------HHHHHHHHHHcCCCceeeceEEecCCCC----CCCCCCCCCCcccccccccCCC-CcEEEEcC
Q 001926 760 NK---------------LYATEMAKVLDPKGVLFAGRVISRGDDG----DPFDGDERVPKSKDLEGVLGME-SAVVIIDD 819 (995)
Q Consensus 760 tk---------------eYAd~VLdiLDP~g~lF~~RIySRddc~----~~~dG~er~~yiKDLsrVLGrd-s~VVIVDD 819 (995)
.. ++...+++.+ +.+|.. +|....++ ...+++ ...+.+-+. .+|.. +++|+|+|
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~f~~-i~~~~~~~~~~~~~~KP~-p~~~~~~~~-~l~~~~~~~~~VgD 128 (181)
T PRK08942 55 SGIARGLFTEAQLNALHEKMDWSLADR---GGRLDG-IYYCPHHPEDGCDCRKPK-PGMLLSIAE-RLNIDLAGSPMVGD 128 (181)
T ss_pred ccccCCcCCHHHHHHHHHHHHHHHHHc---CCccce-EEECCCCCCCCCcCCCCC-HHHHHHHHH-HcCCChhhEEEEeC
Confidence 73 3333344433 223543 33222111 111211 112333343 35666 88999999
Q ss_pred CC
Q 001926 820 SV 821 (995)
Q Consensus 820 sp 821 (995)
+.
T Consensus 129 s~ 130 (181)
T PRK08942 129 SL 130 (181)
T ss_pred CH
Confidence 97
No 53
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=96.03 E-value=0.017 Score=58.24 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=24.3
Q ss_pred EeecccHHHHHHHHhcc-ceEEEEcCCch
Q 001926 734 TKLRPGIWTFLERASKL-FEMHLYTMGNK 761 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~-YEIvIFTAGtk 761 (995)
+.+.||+.++|++|.+. |.++|.|+...
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 34679999999999865 99999999885
No 54
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=95.96 E-value=0.021 Score=62.78 Aligned_cols=89 Identities=21% Similarity=0.303 Sum_probs=56.4
Q ss_pred cCCCeEEEEeCCCceeecccC--------CCCCCc-hhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHh
Q 001926 678 SARKLCLVLDLDHTLLNSAKF--------HEVDPV-HDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS 748 (995)
Q Consensus 678 s~kKLTLVLDLDETLVHSs~~--------~eldP~-~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLS 748 (995)
..+++.+|||||||++..... ..+++. +++|.. ..-...-||+.+||+++.
T Consensus 72 ~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~--------------------~~~a~~ipGA~e~L~~L~ 131 (266)
T TIGR01533 72 KDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQ--------------------AAQAKPVAGALDFLNYAN 131 (266)
T ss_pred CCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHH--------------------cCCCCcCccHHHHHHHHH
Confidence 577899999999999977521 001110 111111 112346799999999997
Q ss_pred cc-ceEEEEcCCchHHHHHHHHHHcCCCc--eeeceEEecC
Q 001926 749 KL-FEMHLYTMGNKLYATEMAKVLDPKGV--LFAGRVISRG 786 (995)
Q Consensus 749 k~-YEIvIFTAGtkeYAd~VLdiLDP~g~--lF~~RIySRd 786 (995)
+. +.|+|.|+....+.+..++.|.-.|. ++...|+.|+
T Consensus 132 ~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~ 172 (266)
T TIGR01533 132 SKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKK 172 (266)
T ss_pred HCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCC
Confidence 54 79999999987777766666544442 1223466564
No 55
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=95.72 E-value=0.0097 Score=68.00 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=63.3
Q ss_pred HhhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEe-----------cccCCCccEEEecCCCCHHHHHHHhcCCcE
Q 001926 902 RKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCT-----------KHIDDQVTHVVANSLGTDKVNWALSTGRFV 970 (995)
Q Consensus 902 rkILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs-----------~dvd~~VTHLVAss~gTeKv~~Alk~GI~I 970 (995)
..+|+|.++++|.-+|. ..|.=+|..+||.|. .+++..|||-||-++- ..-+--|...
T Consensus 348 ~slFS~f~FyisreVp~-------dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~----~~~kvegrtY 416 (591)
T COG5163 348 KSLFSGFKFYISREVPG-------DSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPV----MKNKVEGRTY 416 (591)
T ss_pred hhhhhceEEEEeccccc-------hHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchh----hhhhhcceee
Confidence 45899999999987765 235666899999884 3556789999997752 1112248899
Q ss_pred ecHHHHHHHHHhccCCCCCCCCC
Q 001926 971 VHPGWVEASALLYRRANEQDFAI 993 (995)
Q Consensus 971 VSPdWLedC~~~~kRvDEsdYlL 993 (995)
|.|+||++|+..+++..-..|.+
T Consensus 417 iQPQw~fDsiNkG~l~~~~~Y~~ 439 (591)
T COG5163 417 IQPQWLFDSINKGKLACVENYCV 439 (591)
T ss_pred echHHHHhhhccccchhhhhccc
Confidence 99999999999999999888875
No 56
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=94.75 E-value=0.034 Score=56.86 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=61.5
Q ss_pred EEeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC
Q 001926 733 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 811 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd 811 (995)
++.+.||+.+||+++.+. +.++|.|++...++...++.++-.. +|.. +++.++.+. .+++ ...+.+-++ .+|-+
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~f~~-i~~~~~~~~-~KP~-~~~~~~~~~-~~~~~ 166 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD-FFDA-VITSEEEGV-EKPH-PKIFYAALK-RLGVK 166 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH-hccE-EEEeccCCC-CCCC-HHHHHHHHH-HcCCC
Confidence 468899999999999876 9999999999999999999887654 7865 665554321 2221 112334444 46766
Q ss_pred -CcEEEEcCCC
Q 001926 812 -SAVVIIDDSV 821 (995)
Q Consensus 812 -s~VVIVDDsp 821 (995)
+++|+|+|++
T Consensus 167 ~~~~~~igDs~ 177 (221)
T TIGR02253 167 PEEAVMVGDRL 177 (221)
T ss_pred hhhEEEECCCh
Confidence 7899999997
No 57
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=94.52 E-value=0.043 Score=52.38 Aligned_cols=86 Identities=23% Similarity=0.307 Sum_probs=62.0
Q ss_pred EEEeecccHHHHHHHHh-ccceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCC
Q 001926 732 MWTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM 810 (995)
Q Consensus 732 ~yVKLRPgL~EFLeeLS-k~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGr 810 (995)
....+.|++.+||+.++ +.|.++|+|++...++..+++.+.-. .+|.. +++.++.+. .+.+ ...|.+-++ .+|.
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~~-i~~~~~~~~-~Kp~-~~~~~~~~~-~~~~ 148 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFDE-IISSDDVGS-RKPD-PDAYRRALE-KLGI 148 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCSE-EEEGGGSSS-STTS-HHHHHHHHH-HHTS
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-ccccc-ccccchhhh-hhhH-HHHHHHHHH-HcCC
Confidence 46889999999999999 78999999999999999999988655 46774 666554332 2211 011222233 3466
Q ss_pred C-CcEEEEcCCCc
Q 001926 811 E-SAVVIIDDSVR 822 (995)
Q Consensus 811 d-s~VVIVDDsp~ 822 (995)
. +++|+|||++.
T Consensus 149 ~p~~~~~vgD~~~ 161 (176)
T PF13419_consen 149 PPEEILFVGDSPS 161 (176)
T ss_dssp SGGGEEEEESSHH
T ss_pred CcceEEEEeCCHH
Confidence 6 89999999973
No 58
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=94.47 E-value=0.069 Score=57.76 Aligned_cols=54 Identities=4% Similarity=-0.033 Sum_probs=38.5
Q ss_pred EEEeecccHHHHHHHHh-ccceEEEEcC----CchHHHHHHHHHHcC-CCceeeceEEecC
Q 001926 732 MWTKLRPGIWTFLERAS-KLFEMHLYTM----GNKLYATEMAKVLDP-KGVLFAGRVISRG 786 (995)
Q Consensus 732 ~yVKLRPgL~EFLeeLS-k~YEIvIFTA----GtkeYAd~VLdiLDP-~g~lF~~RIySRd 786 (995)
.+....||+.+||+++. +-++|+|-|+ ....+++.+++.+.- ...+|.- ++..+
T Consensus 111 ~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~v-il~gd 170 (237)
T PRK11009 111 EFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPV-IFAGD 170 (237)
T ss_pred ccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeE-EEcCC
Confidence 34566777999999994 5699999999 456788888886654 2336653 55443
No 59
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=94.47 E-value=0.15 Score=58.31 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=39.9
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhc-cceEEEEcC
Q 001926 680 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTM 758 (995)
Q Consensus 680 kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk-~YEIvIFTA 758 (995)
+|.+|+||-|+||+..... . |.. ..-..+.+.||+.+||++|.+ .|.++|.|+
T Consensus 1 ~~k~l~lDrDgtl~~~~~~----~-----y~~-----------------~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTN 54 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPT----D-----FQV-----------------DSLDKLAFEPGVIPALLKLQKAGYKLVMVTN 54 (354)
T ss_pred CCcEEEEeCCCCccCCCCc----c-----ccc-----------------cCcccceECcCHHHHHHHHHhCCCeEEEEEC
Confidence 4789999999999987420 0 000 011246789999999999986 499999999
Q ss_pred C
Q 001926 759 G 759 (995)
Q Consensus 759 G 759 (995)
.
T Consensus 55 q 55 (354)
T PRK05446 55 Q 55 (354)
T ss_pred C
Confidence 4
No 60
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=94.38 E-value=0.071 Score=57.58 Aligned_cols=83 Identities=24% Similarity=0.275 Sum_probs=56.1
Q ss_pred EeecccHHHHHHHHhccceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCC--------cccccc
Q 001926 734 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVP--------KSKDLE 805 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~--------yiKDLs 805 (995)
+|.-|-|++||-.|.+.+ .+|||+|.+..|..+++.|.-.. .|.. |++-+ ..+..+... +-|-++
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieD-cFeg-ii~~e----~~np~~~~~vcKP~~~afE~a~k 171 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIED-CFEG-IICFE----TLNPIEKTVVCKPSEEAFEKAMK 171 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHH-hccc-eeEee----ccCCCCCceeecCCHHHHHHHHH
Confidence 788888999999999888 99999999999999999998765 4665 43211 111100001 111122
Q ss_pred cccCCC--CcEEEEcCCCccc
Q 001926 806 GVLGME--SAVVIIDDSVRVW 824 (995)
Q Consensus 806 rVLGrd--s~VVIVDDsp~vw 824 (995)
+.|-+ ++++++||+...-
T Consensus 172 -~agi~~p~~t~FfDDS~~NI 191 (244)
T KOG3109|consen 172 -VAGIDSPRNTYFFDDSERNI 191 (244)
T ss_pred -HhCCCCcCceEEEcCchhhH
Confidence 33543 7999999996443
No 61
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=94.20 E-value=0.012 Score=70.87 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhcCCcEec
Q 001926 893 VRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVH 972 (995)
Q Consensus 893 VR~ILkeiQrkILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~gTeKv~~Alk~GI~IVS 972 (995)
++..-.+++-.+|.||.++|-|| + .++...+....+.-||+|.. =+..|||||.......-.-.+......+|.
T Consensus 199 ~~~f~d~hrl~~feg~~~~f~gF-~----~ee~~~m~~sle~~gg~~a~-~d~~cthvvv~e~~~~~~p~~~s~~~~~vk 272 (850)
T KOG3524|consen 199 EPCFVDKHRLGVFEGLSLFFHGF-K----QEEIDDMLRSLENTGGKLAP-SDTLCTHVVVNEDNDEVEPLAVSSNQVHVK 272 (850)
T ss_pred ccchhhhhccccccCCeEeecCC-c----HHHHHHHHHHHHhcCCcccC-CCCCceeEeecCCccccccccccccceeec
Confidence 45566778889999999999997 2 33455677788999999998 667899999987665544456677789999
Q ss_pred HHHHHHHHHhccCCCCCCCCC
Q 001926 973 PGWVEASALLYRRANEQDFAI 993 (995)
Q Consensus 973 PdWLedC~~~~kRvDEsdYlL 993 (995)
-+|+|-++..+.+.-|.+|++
T Consensus 273 ~ewfw~siq~g~~a~e~~yl~ 293 (850)
T KOG3524|consen 273 KEWFWVSIQRGCCAIEDNYLL 293 (850)
T ss_pred ccceEEEEecchhccccceec
Confidence 999999999999999999975
No 62
>PRK08238 hypothetical protein; Validated
Probab=93.92 E-value=0.074 Score=62.80 Aligned_cols=91 Identities=22% Similarity=0.307 Sum_probs=56.4
Q ss_pred EeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCCC
Q 001926 734 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMES 812 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrds 812 (995)
+.++|++.++|+++.+ -+.++|-|++.+.|++++++.++ +|.. ++.-++..+ .+|. +...-|...++. +
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lG----lFd~-Vigsd~~~~-~kg~---~K~~~l~~~l~~-~ 140 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLG----LFDG-VFASDGTTN-LKGA---AKAAALVEAFGE-R 140 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcC----CCCE-EEeCCCccc-cCCc---hHHHHHHHHhCc-c
Confidence 3578999999999975 58999999999999999999985 3653 555443211 1121 111112222332 4
Q ss_pred cEEEEcCCC---cccccCcccccccc
Q 001926 813 AVVIIDDSV---RVWPHNKLNLIVVE 835 (995)
Q Consensus 813 ~VVIVDDsp---~vw~~qpdNgI~Ik 835 (995)
.++++-|+. ..|.. -+|.+.|.
T Consensus 141 ~~~yvGDS~~Dlp~~~~-A~~av~Vn 165 (479)
T PRK08238 141 GFDYAGNSAADLPVWAA-ARRAIVVG 165 (479)
T ss_pred CeeEecCCHHHHHHHHh-CCCeEEEC
Confidence 467777776 34443 24555554
No 63
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=93.58 E-value=0.094 Score=53.38 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=61.4
Q ss_pred EEeecccHHHHHHHHhccceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCccccccccc-CCC
Q 001926 733 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL-GME 811 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVL-Grd 811 (995)
.+.++||+.++|+++.+.|.++|-|++...++..+++.++-.+ +|.. +++.+++. ..+++ ...+.+-++ .+ |..
T Consensus 95 ~~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~fd~-i~~~~~~~-~~KP~-~~~~~~~~~-~~~~~~ 169 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FFDD-IFVSEDAG-IQKPD-KEIFNYALE-RMPKFS 169 (224)
T ss_pred cCeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hcCE-EEEcCccC-CCCCC-HHHHHHHHH-HhcCCC
Confidence 3689999999999999879999999999999999999876554 6864 66655433 22321 112334454 46 655
Q ss_pred -CcEEEEcCCC
Q 001926 812 -SAVVIIDDSV 821 (995)
Q Consensus 812 -s~VVIVDDsp 821 (995)
+.+|+|+|++
T Consensus 170 ~~~~v~igD~~ 180 (224)
T TIGR02254 170 KEEVLMIGDSL 180 (224)
T ss_pred chheEEECCCc
Confidence 8899999986
No 64
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=93.40 E-value=0.11 Score=52.67 Aligned_cols=97 Identities=18% Similarity=0.106 Sum_probs=64.8
Q ss_pred EEeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC
Q 001926 733 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 811 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd 811 (995)
.+.++||+.++|+.+.+. |.++|.|++.+.++..+++.++-.+ +|.. +++.++.. ..+++ ...+.+-++ .+|..
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~-~~~~~~~~-~~Kp~-p~~~~~~~~-~~~~~ 157 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YFSV-LIGGDSLA-QRKPH-PDPLLLAAE-RLGVA 157 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hCcE-EEecCCCC-CCCCC-hHHHHHHHH-HcCCC
Confidence 367899999999999754 9999999999999999999987654 6764 66554322 11211 112333343 45666
Q ss_pred -CcEEEEcCCCcccccCccccccc
Q 001926 812 -SAVVIIDDSVRVWPHNKLNLIVV 834 (995)
Q Consensus 812 -s~VVIVDDsp~vw~~qpdNgI~I 834 (995)
+.+++|+|+..-...-...++.+
T Consensus 158 ~~~~~~igDs~~d~~aa~~aG~~~ 181 (213)
T TIGR01449 158 PQQMVYVGDSRVDIQAARAAGCPS 181 (213)
T ss_pred hhHeEEeCCCHHHHHHHHHCCCeE
Confidence 78999999975443222344443
No 65
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=93.05 E-value=0.26 Score=48.87 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=37.4
Q ss_pred eecccHHHHHHHH-hccceEEEEcCCchHHHH------------HHHHHHcCCCceeeceEEec
Q 001926 735 KLRPGIWTFLERA-SKLFEMHLYTMGNKLYAT------------EMAKVLDPKGVLFAGRVISR 785 (995)
Q Consensus 735 KLRPgL~EFLeeL-Sk~YEIvIFTAGtkeYAd------------~VLdiLDP~g~lF~~RIySR 785 (995)
...+.+.+.|+++ .+-++|+++|+-...+.. .++++|+-.+.-|. .|+-|
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd-~l~~~ 86 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYD-EIYVG 86 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCc-eEEeC
Confidence 3578888899988 567999999998888776 77888887764443 35443
No 66
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=92.98 E-value=0.18 Score=51.76 Aligned_cols=87 Identities=18% Similarity=0.181 Sum_probs=61.8
Q ss_pred EEeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC
Q 001926 733 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 811 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd 811 (995)
.+.+.||+.++|+.+.+ .+.++|.|++.+.++..+++.++-.. ||.. +++.+++.. .+.. ...+.+-++ .+|-.
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f~~-i~~~~~~~~-~Kp~-p~~~~~~~~-~~~~~ 154 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE-FFDV-VITLDDVEH-AKPD-PEPVLKALE-LLGAK 154 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-ceeE-EEecCcCCC-CCCC-cHHHHHHHH-HcCCC
Confidence 46788999999999985 58999999999999999999987665 7875 666554321 1211 112233333 35655
Q ss_pred -CcEEEEcCCCccc
Q 001926 812 -SAVVIIDDSVRVW 824 (995)
Q Consensus 812 -s~VVIVDDsp~vw 824 (995)
+++|+|+|++.-.
T Consensus 155 ~~~~~~iGDs~~Di 168 (214)
T PRK13288 155 PEEALMVGDNHHDI 168 (214)
T ss_pred HHHEEEECCCHHHH
Confidence 8899999997433
No 67
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=92.97 E-value=0.14 Score=50.25 Aligned_cols=83 Identities=27% Similarity=0.259 Sum_probs=55.2
Q ss_pred EeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-
Q 001926 734 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 811 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd- 811 (995)
+.+.||+.+||+.+.+ -|.++|.|++...+ ..++..++-.. +|.. ++.-++.. ..+++ ...+.+-++ .+|.+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f~~-i~~~~~~~-~~KP~-~~~~~~~~~-~~~~~~ 157 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LFDV-VIFSGDVG-RGKPD-PDIYLLALK-KLGLKP 157 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HCCE-EEEcCCCC-CCCCC-HHHHHHHHH-HcCCCc
Confidence 6789999999999986 59999999999999 66666566554 5765 44433332 11211 112222232 45666
Q ss_pred CcEEEEcCCCc
Q 001926 812 SAVVIIDDSVR 822 (995)
Q Consensus 812 s~VVIVDDsp~ 822 (995)
+.+|+|||++.
T Consensus 158 ~~~~~vgD~~~ 168 (183)
T TIGR01509 158 EECLFVDDSPA 168 (183)
T ss_pred ceEEEEcCCHH
Confidence 88999999973
No 68
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=92.88 E-value=0.15 Score=54.36 Aligned_cols=96 Identities=19% Similarity=0.135 Sum_probs=66.6
Q ss_pred EEeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC
Q 001926 733 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 811 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd 811 (995)
.+.+.||+.++|+++.+ -|.++|.|++.+.++..+++.++-.. ||.. +++.+++.. .+++ ...+.+-+. .+|.+
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~-iv~~~~~~~-~KP~-p~~~~~a~~-~~~~~ 180 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD-FFQA-VIIGSECEH-AKPH-PDPYLKALE-VLKVS 180 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh-hCcE-EEecCcCCC-CCCC-hHHHHHHHH-HhCCC
Confidence 36778999999999965 59999999999999999999988664 7875 666555432 2321 112444454 35665
Q ss_pred -CcEEEEcCCCcccccCcccccc
Q 001926 812 -SAVVIIDDSVRVWPHNKLNLIV 833 (995)
Q Consensus 812 -s~VVIVDDsp~vw~~qpdNgI~ 833 (995)
+.+|+|+|++.-...-...++.
T Consensus 181 ~~~~l~vgDs~~Di~aA~~aGi~ 203 (248)
T PLN02770 181 KDHTFVFEDSVSGIKAGVAAGMP 203 (248)
T ss_pred hhHEEEEcCCHHHHHHHHHCCCE
Confidence 8899999998433222344554
No 69
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=92.70 E-value=0.11 Score=58.31 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=54.9
Q ss_pred EeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecC------CCCCCCCCCCCCCccccccc
Q 001926 734 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG------DDGDPFDGDERVPKSKDLEG 806 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRd------dc~~~~dG~er~~yiKDLsr 806 (995)
+.++||+.+||+++.+. |.++|.|.|...|++.+++.|+-.. +|.+++-..+ .++...++......++.+..
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~-~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~ 258 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA-AVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQ 258 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe-EEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHH
Confidence 67899999999999865 8999999999999999999887543 3333221111 01111111100012233333
Q ss_pred ccCCC-CcEEEEcCCC
Q 001926 807 VLGME-SAVVIIDDSV 821 (995)
Q Consensus 807 VLGrd-s~VVIVDDsp 821 (995)
.+|-+ +.+|.|-|..
T Consensus 259 ~lgi~~~qtIaVGDg~ 274 (322)
T PRK11133 259 EYEIPLAQTVAIGDGA 274 (322)
T ss_pred HcCCChhhEEEEECCH
Confidence 34656 7899999986
No 70
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=92.63 E-value=0.14 Score=51.86 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=59.0
Q ss_pred EeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-
Q 001926 734 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 811 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd- 811 (995)
+.+.|++.++|+++.+. |.++|.|++...++..+++.+.-. .+|.. +++.++.+ ..+.+ ...|.+-++ .+|..
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~-~~fd~-i~~s~~~~-~~KP~-~~~~~~~~~-~~~~~p 165 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD-DPFDA-VLSADAVR-AYKPA-PQVYQLALE-ALGVPP 165 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh-hhhhe-eEehhhcC-CCCCC-HHHHHHHHH-HhCCCh
Confidence 56789999999999986 999999999999999999987643 36765 66555432 22221 111222233 35665
Q ss_pred CcEEEEcCCC
Q 001926 812 SAVVIIDDSV 821 (995)
Q Consensus 812 s~VVIVDDsp 821 (995)
+.+|+|+|+.
T Consensus 166 ~~~~~vgD~~ 175 (198)
T TIGR01428 166 DEVLFVASNP 175 (198)
T ss_pred hhEEEEeCCH
Confidence 8899999997
No 71
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=92.53 E-value=0.31 Score=58.44 Aligned_cols=112 Identities=15% Similarity=0.151 Sum_probs=67.2
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhcc-ceEEEEc
Q 001926 679 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYT 757 (995)
Q Consensus 679 ~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~-YEIvIFT 757 (995)
.+.+++.||||+||+.+.....+ +. .+ .-|..+-|++.+.|++|.+. |.|+|+|
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~~~-~~--------------~~----------~d~~~l~pgV~e~L~~L~~~Gy~IvIvT 220 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGKVF-PK--------------GP----------DDWQIIFPEIPEKLKELEADGFKICIFT 220 (526)
T ss_pred ccCcEEEEECCCCccccCCCccC-CC--------------CH----------HHeeecccCHHHHHHHHHHCCCEEEEEE
Confidence 56679999999999976421000 00 00 01333569999999999865 9999999
Q ss_pred CCch------------HHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCc---ccccccccCCC-CcEEEEcCCC
Q 001926 758 MGNK------------LYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPK---SKDLEGVLGME-SAVVIIDDSV 821 (995)
Q Consensus 758 AGtk------------eYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~y---iKDLsrVLGrd-s~VVIVDDsp 821 (995)
+... .++..|++.|+- .|. -+++-++|. +.+.. ...+ .+++..-++-+ +..++|-|..
T Consensus 221 NQ~gI~~G~~~~~~~~~ki~~iL~~lgi---pfd-viia~~~~~-~RKP~-pGm~~~a~~~~~~~~~Id~~~S~~VGDaa 294 (526)
T TIGR01663 221 NQGGIARGKINADDFKAKIEAIVAKLGV---PFQ-VFIAIGAGF-YRKPL-TGMWDHLKEEANDGTEIQEDDCFFVGDAA 294 (526)
T ss_pred CCcccccCcccHHHHHHHHHHHHHHcCC---ceE-EEEeCCCCC-CCCCC-HHHHHHHHHhcCcccCCCHHHeEEeCCcc
Confidence 9776 567788887763 255 255544432 22221 0011 12221011235 7899999987
No 72
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=92.39 E-value=0.23 Score=50.73 Aligned_cols=97 Identities=15% Similarity=0.095 Sum_probs=65.4
Q ss_pred EEeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC
Q 001926 733 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 811 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd 811 (995)
.+.+.||+.++|+++.+ -|.++|.|++...++..+++.++-.+ +|.. +++.+++. ..+.. ...+.+-++ .+|.+
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f~~-i~~~~~~~-~~KP~-~~~~~~~~~-~~~~~ 147 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LFDH-VIGSDEVP-RPKPA-PDIVREALR-LLDVP 147 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-heee-EEecCcCC-CCCCC-hHHHHHHHH-HcCCC
Confidence 36789999999999975 59999999999999999999888765 6764 66655432 12221 111222232 35665
Q ss_pred -CcEEEEcCCCcccccCccccccc
Q 001926 812 -SAVVIIDDSVRVWPHNKLNLIVV 834 (995)
Q Consensus 812 -s~VVIVDDsp~vw~~qpdNgI~I 834 (995)
+++|+|+|+..-...-...++.+
T Consensus 148 ~~~~l~igD~~~Di~aA~~~Gi~~ 171 (205)
T TIGR01454 148 PEDAVMVGDAVTDLASARAAGTAT 171 (205)
T ss_pred hhheEEEcCCHHHHHHHHHcCCeE
Confidence 78999999974333223455543
No 73
>PRK06769 hypothetical protein; Validated
Probab=92.35 E-value=0.24 Score=50.38 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=45.5
Q ss_pred eecccHHHHHHHHhc-cceEEEEcCCchHHH-----HHHHHHHcCCCceeeceEEecCCCC---CCCCCCCCCCcccccc
Q 001926 735 KLRPGIWTFLERASK-LFEMHLYTMGNKLYA-----TEMAKVLDPKGVLFAGRVISRGDDG---DPFDGDERVPKSKDLE 805 (995)
Q Consensus 735 KLRPgL~EFLeeLSk-~YEIvIFTAGtkeYA-----d~VLdiLDP~g~lF~~RIySRddc~---~~~dG~er~~yiKDLs 805 (995)
.+-||+.++|++|.+ -|.++|.|++....+ ..+...|..-+ |...+++-..+. ...+++ ...+.+-++
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~KP~-p~~~~~~~~ 104 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFG--FDDIYLCPHKHGDGCECRKPS-TGMLLQAAE 104 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCC--cCEEEECcCCCCCCCCCCCCC-HHHHHHHHH
Confidence 467999999999976 599999999875210 12233333323 222222211111 111211 112334444
Q ss_pred cccCCC-CcEEEEcCCC
Q 001926 806 GVLGME-SAVVIIDDSV 821 (995)
Q Consensus 806 rVLGrd-s~VVIVDDsp 821 (995)
.++.+ +.+|+|+|++
T Consensus 105 -~l~~~p~~~i~IGD~~ 120 (173)
T PRK06769 105 -KHGLDLTQCAVIGDRW 120 (173)
T ss_pred -HcCCCHHHeEEEcCCH
Confidence 35665 8899999997
No 74
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=92.30 E-value=0.18 Score=51.14 Aligned_cols=53 Identities=25% Similarity=0.363 Sum_probs=34.0
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhc-cceEEEEcCC
Q 001926 682 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG 759 (995)
Q Consensus 682 LTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk-~YEIvIFTAG 759 (995)
+++.+|||+|||........ .. .+. =|..+-|++.+-|+++.+ -|.|+|+|+.
T Consensus 1 Kia~fD~DgTLi~~~s~~~f--------~~-------~~~----------D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKF--------PK-------DPD----------DWKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS---------S-------STC----------GGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred CEEEEeCCCCccCCCCCCcC--------cC-------CHH----------HhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 36889999999998632110 00 010 144567899999999986 6999999985
No 75
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=92.28 E-value=0.17 Score=55.04 Aligned_cols=95 Identities=17% Similarity=0.185 Sum_probs=65.8
Q ss_pred EEeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC
Q 001926 733 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 811 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd 811 (995)
.+.+.||+.++|+++.+. |.++|.|++.+.|+..+++.++-.. ||.. +++.+++. ..++. ...+.+-+. .+|..
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd~-ii~~~d~~-~~KP~-Pe~~~~a~~-~l~~~ 181 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FFSV-VLAAEDVY-RGKPD-PEMFMYAAE-RLGFI 181 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hCcE-EEecccCC-CCCCC-HHHHHHHHH-HhCCC
Confidence 356799999999999864 9999999999999999999887554 7875 66655542 12321 112444444 46766
Q ss_pred -CcEEEEcCCCcccccCccccc
Q 001926 812 -SAVVIIDDSVRVWPHNKLNLI 832 (995)
Q Consensus 812 -s~VVIVDDsp~vw~~qpdNgI 832 (995)
+.+|+|+|+..-...-...++
T Consensus 182 p~~~l~IgDs~~Di~aA~~aG~ 203 (260)
T PLN03243 182 PERCIVFGNSNSSVEAAHDGCM 203 (260)
T ss_pred hHHeEEEcCCHHHHHHHHHcCC
Confidence 889999999743332233444
No 76
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=92.10 E-value=0.12 Score=51.74 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=57.5
Q ss_pred EeecccHHHHHHHHhccceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCC---CCCCCCCCcccccccccCC
Q 001926 734 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDP---FDGDERVPKSKDLEGVLGM 810 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~---~dG~er~~yiKDLsrVLGr 810 (995)
++..||+.++|++|. +.++|.|++.+.++..+++.++-.. +|.. +++.++.... .+++ ...+.+-++ .+|.
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~-~fd~-i~~~~~~~~~~~~~KP~-p~~~~~~~~-~~~~ 156 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIED-CFDG-IFCFDTANPDYLLPKPS-PQAYEKALR-EAGV 156 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHh-hhCe-EEEeecccCccCCCCCC-HHHHHHHHH-HhCC
Confidence 457899999999997 6899999999999999999886544 7875 6654432210 1221 112333343 3566
Q ss_pred C-CcEEEEcCCCc
Q 001926 811 E-SAVVIIDDSVR 822 (995)
Q Consensus 811 d-s~VVIVDDsp~ 822 (995)
+ +++|+|+|++.
T Consensus 157 ~~~~~l~vgD~~~ 169 (184)
T TIGR01993 157 DPERAIFFDDSAR 169 (184)
T ss_pred CccceEEEeCCHH
Confidence 6 88999999863
No 77
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=92.04 E-value=0.31 Score=49.41 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=61.5
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhcc-ceEEEEc
Q 001926 679 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYT 757 (995)
Q Consensus 679 ~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~-YEIvIFT 757 (995)
..-..||+|+|+||+.... ..+.|++.++|++|.+. +.++|.|
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~------------------------------------~~~~pgv~e~L~~Lk~~g~~l~I~S 66 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH------------------------------------NEAYPALRDWIEELKAAGRKLLIVS 66 (170)
T ss_pred CCCCEEEEecCCccccCCC------------------------------------CCcChhHHHHHHHHHHcCCEEEEEe
Confidence 4556899999999996421 02368999999999876 9999999
Q ss_pred CCc-hHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEcCCC
Q 001926 758 MGN-KLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSV 821 (995)
Q Consensus 758 AGt-keYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s~VVIVDDsp 821 (995)
++. ..++..+++.++-. .+. . +. +.. ...+.+-++ .+|.+ +.+|+|+|+.
T Consensus 67 n~~~~~~~~~~~~~~gl~-------~~~-~-~~---KP~-p~~~~~~l~-~~~~~~~~~l~IGDs~ 118 (170)
T TIGR01668 67 NNAGEQRAKAVEKALGIP-------VLP-H-AV---KPP-GCAFRRAHP-EMGLTSEQVAVVGDRL 118 (170)
T ss_pred CCchHHHHHHHHHHcCCE-------EEc-C-CC---CCC-hHHHHHHHH-HcCCCHHHEEEECCcc
Confidence 999 67777777766532 111 1 11 111 001222233 35665 7899999996
No 78
>PRK09449 dUMP phosphatase; Provisional
Probab=92.01 E-value=0.2 Score=51.56 Aligned_cols=83 Identities=18% Similarity=0.171 Sum_probs=60.1
Q ss_pred EeecccHHHHHHHHhccceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCC-C-
Q 001926 734 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM-E- 811 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGr-d- 811 (995)
+.+.||+.++|+.+.+.|.+.|.|++.+.++..+++.++-.+ +|.. +++.++++. .+++ ...+.+-++ .+|. +
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~-v~~~~~~~~-~KP~-p~~~~~~~~-~~~~~~~ 168 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YFDL-LVISEQVGV-AKPD-VAIFDYALE-QMGNPDR 168 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-HcCE-EEEECccCC-CCCC-HHHHHHHHH-HcCCCCc
Confidence 568999999999999889999999999999999998876654 6764 655554332 2321 112334444 3564 4
Q ss_pred CcEEEEcCCC
Q 001926 812 SAVVIIDDSV 821 (995)
Q Consensus 812 s~VVIVDDsp 821 (995)
+.+|+|+|+.
T Consensus 169 ~~~~~vgD~~ 178 (224)
T PRK09449 169 SRVLMVGDNL 178 (224)
T ss_pred ccEEEEcCCc
Confidence 6899999996
No 79
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=91.96 E-value=0.29 Score=50.07 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=59.6
Q ss_pred EEeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC
Q 001926 733 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 811 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd 811 (995)
.+..+||+.+||+.+.+ .+.++|.|++...++..+++.++-.. +|. .+++.+++. ..+.. ...+.+-+. .++..
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~-~~kp~-~~~~~~~~~-~~~~~ 165 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD-YFS-VVIGGDSLP-NKKPD-PAPLLLACE-KLGLD 165 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc-Ccc-EEEcCCCCC-CCCcC-hHHHHHHHH-HcCCC
Confidence 36789999999999985 59999999999999999999887654 565 366544322 11211 001222222 45655
Q ss_pred -CcEEEEcCCCccc
Q 001926 812 -SAVVIIDDSVRVW 824 (995)
Q Consensus 812 -s~VVIVDDsp~vw 824 (995)
+.+|+|+|+..-.
T Consensus 166 ~~~~i~igD~~~Di 179 (226)
T PRK13222 166 PEEMLFVGDSRNDI 179 (226)
T ss_pred hhheEEECCCHHHH
Confidence 8899999997433
No 80
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=91.33 E-value=0.31 Score=51.58 Aligned_cols=96 Identities=14% Similarity=0.025 Sum_probs=64.8
Q ss_pred EeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCC--
Q 001926 734 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM-- 810 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGr-- 810 (995)
+.+.||+.++|+.+.+. +.+.|-|++.+.+++.+++.++-.+ +|-+.+++.++.. ..+++ ...+.+-++ .+|.
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f~d~ii~~~~~~-~~KP~-p~~~~~a~~-~l~~~~ 173 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG-YRPDYNVTTDDVP-AGRPA-PWMALKNAI-ELGVYD 173 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC-CCCceEEccccCC-CCCCC-HHHHHHHHH-HcCCCC
Confidence 57889999999999764 9999999999999999999887666 4434577765432 12221 112444444 3564
Q ss_pred CCcEEEEcCCCcccccCcccccc
Q 001926 811 ESAVVIIDDSVRVWPHNKLNLIV 833 (995)
Q Consensus 811 ds~VVIVDDsp~vw~~qpdNgI~ 833 (995)
.+.+|+|.|++.-...-...++.
T Consensus 174 ~~~~l~IGDs~~Di~aA~~aGi~ 196 (253)
T TIGR01422 174 VAACVKVGDTVPDIEEGRNAGMW 196 (253)
T ss_pred chheEEECCcHHHHHHHHHCCCe
Confidence 37899999997433322234443
No 81
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=91.15 E-value=0.16 Score=52.32 Aligned_cols=96 Identities=15% Similarity=0.069 Sum_probs=63.5
Q ss_pred EEeecccHHHHHHHHhccceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-
Q 001926 733 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 811 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd- 811 (995)
.+.+.||+.+||+.+. +.++|.|++.+.+++.+++.++-.. +|...+++.++.. ..+++ ...+.+-++ .+|..
T Consensus 86 ~~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F~~~v~~~~~~~-~~KP~-p~~~~~a~~-~~~~~p 159 (221)
T PRK10563 86 ELEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YFPDKLFSGYDIQ-RWKPD-PALMFHAAE-AMNVNV 159 (221)
T ss_pred cCCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hCcceEeeHHhcC-CCCCC-hHHHHHHHH-HcCCCH
Confidence 3577899999999994 8999999999999999998876554 6754466654432 12221 112333333 35655
Q ss_pred CcEEEEcCCCcccccCccccccc
Q 001926 812 SAVVIIDDSVRVWPHNKLNLIVV 834 (995)
Q Consensus 812 s~VVIVDDsp~vw~~qpdNgI~I 834 (995)
+.+|+|+|++.-...-..-++.+
T Consensus 160 ~~~l~igDs~~di~aA~~aG~~~ 182 (221)
T PRK10563 160 ENCILVDDSSAGAQSGIAAGMEV 182 (221)
T ss_pred HHeEEEeCcHhhHHHHHHCCCEE
Confidence 78999999985543323344443
No 82
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=90.74 E-value=0.45 Score=49.72 Aligned_cols=114 Identities=20% Similarity=0.303 Sum_probs=77.2
Q ss_pred hhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhcc-ce
Q 001926 674 KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FE 752 (995)
Q Consensus 674 ~~LLs~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~-YE 752 (995)
..|...+-..+|||||+|||-=.. | ..-|-+++.|+++.+. -.
T Consensus 21 ~~L~~~Gikgvi~DlDNTLv~wd~-----~-------------------------------~~tpe~~~W~~e~k~~gi~ 64 (175)
T COG2179 21 DILKAHGIKGVILDLDNTLVPWDN-----P-------------------------------DATPELRAWLAELKEAGIK 64 (175)
T ss_pred HHHHHcCCcEEEEeccCceecccC-----C-------------------------------CCCHHHHHHHHHHHhcCCE
Confidence 456778999999999999995421 1 0357788899999876 88
Q ss_pred EEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEcCCC--cccccCcc
Q 001926 753 MHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSV--RVWPHNKL 829 (995)
Q Consensus 753 IvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s~VVIVDDsp--~vw~~qpd 829 (995)
++|.++.++.-+..++..||-.. |+ +- ...+- ..+-|-|. .++-+ +.||+|-|+- ++...|..
T Consensus 65 v~vvSNn~e~RV~~~~~~l~v~f------i~-~A--~KP~~----~~fr~Al~-~m~l~~~~vvmVGDqL~TDVlggnr~ 130 (175)
T COG2179 65 VVVVSNNKESRVARAAEKLGVPF------IY-RA--KKPFG----RAFRRALK-EMNLPPEEVVMVGDQLFTDVLGGNRA 130 (175)
T ss_pred EEEEeCCCHHHHHhhhhhcCCce------ee-cc--cCccH----HHHHHHHH-HcCCChhHEEEEcchhhhhhhccccc
Confidence 99999999999999999998663 22 21 01110 01223343 35556 8899999986 56655432
Q ss_pred --ccccccce
Q 001926 830 --NLIVVERY 837 (995)
Q Consensus 830 --NgI~IkpY 837 (995)
-.|.|+|-
T Consensus 131 G~~tIlV~Pl 140 (175)
T COG2179 131 GMRTILVEPL 140 (175)
T ss_pred CcEEEEEEEe
Confidence 34566665
No 83
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=90.73 E-value=0.49 Score=50.19 Aligned_cols=67 Identities=16% Similarity=0.090 Sum_probs=49.7
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhc-cceEEEEcC
Q 001926 680 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTM 758 (995)
Q Consensus 680 kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk-~YEIvIFTA 758 (995)
+-..+++|+||||++... .-||+.++|+++.+ -+.++|.|+
T Consensus 7 ~~~~~~~D~dG~l~~~~~--------------------------------------~~pga~e~L~~L~~~G~~~~ivTN 48 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNH--------------------------------------TYPGAVQNLNKIIAQGKPVYFVSN 48 (242)
T ss_pred cCCEEEEecccccccCCc--------------------------------------cCccHHHHHHHHHHCCCEEEEEeC
Confidence 344789999999987531 36999999999986 589999999
Q ss_pred CchHHHH--HHHHHHcCCCceeeceEEec
Q 001926 759 GNKLYAT--EMAKVLDPKGVLFAGRVISR 785 (995)
Q Consensus 759 GtkeYAd--~VLdiLDP~g~lF~~RIySR 785 (995)
+.+.+++ ..++.++-...+|.. |++.
T Consensus 49 ~~~~~~~~~~~L~~~gl~~~~~~~-Ii~s 76 (242)
T TIGR01459 49 SPRNIFSLHKTLKSLGINADLPEM-IISS 76 (242)
T ss_pred CCCChHHHHHHHHHCCCCccccce-EEcc
Confidence 9998776 667766654324553 5543
No 84
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=90.46 E-value=0.5 Score=44.50 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=24.4
Q ss_pred cccHHHHHHHHhcc-ceEEEEcCCc----hHHHHHH
Q 001926 737 RPGIWTFLERASKL-FEMHLYTMGN----KLYATEM 767 (995)
Q Consensus 737 RPgL~EFLeeLSk~-YEIvIFTAGt----keYAd~V 767 (995)
=||..+||+.+.+. ..+++.|+++ .+|++.+
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 48999999999976 8999999998 5555555
No 85
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=90.15 E-value=0.38 Score=49.80 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=64.2
Q ss_pred EeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-
Q 001926 734 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 811 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd- 811 (995)
+.+.||+.++|+.+.+ -|.++|.|++...+++.+++.+.-.+ +|.. +++.++.. ..+++ ...+..-++ .+|..
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~~-~~~~~~~~-~~Kp~-~~~~~~~~~-~~~~~~ 165 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YFDA-LASAEKLP-YSKPH-PEVYLNCAA-KLGVDP 165 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-cccE-EEEcccCC-CCCCC-HHHHHHHHH-HcCCCH
Confidence 5688999999999985 59999999999999999999887554 6764 66655422 12211 112333333 35666
Q ss_pred CcEEEEcCCCcccccCccccc
Q 001926 812 SAVVIIDDSVRVWPHNKLNLI 832 (995)
Q Consensus 812 s~VVIVDDsp~vw~~qpdNgI 832 (995)
+.+|+|+|+..-...-...++
T Consensus 166 ~~~~~igDs~~Di~aA~~aG~ 186 (222)
T PRK10826 166 LTCVALEDSFNGMIAAKAARM 186 (222)
T ss_pred HHeEEEcCChhhHHHHHHcCC
Confidence 889999999855543233344
No 86
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=90.06 E-value=0.64 Score=50.09 Aligned_cols=57 Identities=21% Similarity=0.096 Sum_probs=45.6
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhcc-ceEEEEcCC
Q 001926 681 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMG 759 (995)
Q Consensus 681 KLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~-YEIvIFTAG 759 (995)
.+.|++||||||+.... ...|...+.|+++.+. +.++|.|.-
T Consensus 4 ~kli~~DlDGTLl~~~~-------------------------------------~~~~~~~~ai~~l~~~Gi~~~iaTgR 46 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT-------------------------------------YSYEPAKPALKALKEKGIPVIPCTSK 46 (273)
T ss_pred ceEEEEcCcccCcCCCC-------------------------------------cCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46899999999997531 0245677889998875 899999999
Q ss_pred chHHHHHHHHHHcCC
Q 001926 760 NKLYATEMAKVLDPK 774 (995)
Q Consensus 760 tkeYAd~VLdiLDP~ 774 (995)
...++..+++.|+-.
T Consensus 47 ~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 47 TAAEVEVLRKELGLE 61 (273)
T ss_pred CHHHHHHHHHHcCCC
Confidence 999999999988754
No 87
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=89.93 E-value=0.52 Score=49.49 Aligned_cols=87 Identities=17% Similarity=0.092 Sum_probs=60.9
Q ss_pred EEeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC
Q 001926 733 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 811 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd 811 (995)
++.+.||+.++|+.+.+. +.+.|.|++...++..+++.++-.. +|.. +++.+++. ..+++ ...+.+-++ .+|-.
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f~~-i~~~~~~~-~~KP~-p~~~~~~~~-~l~~~ 167 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RCAV-LIGGDTLA-ERKPH-PLPLLVAAE-RIGVA 167 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-cccE-EEecCcCC-CCCCC-HHHHHHHHH-HhCCC
Confidence 467899999999999865 8999999999999999999886554 5653 55544432 12221 112333343 46766
Q ss_pred -CcEEEEcCCCccc
Q 001926 812 -SAVVIIDDSVRVW 824 (995)
Q Consensus 812 -s~VVIVDDsp~vw 824 (995)
+.+|+|+|+..-.
T Consensus 168 p~~~l~IGDs~~Di 181 (229)
T PRK13226 168 PTDCVYVGDDERDI 181 (229)
T ss_pred hhhEEEeCCCHHHH
Confidence 8899999997433
No 88
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=89.59 E-value=0.33 Score=51.16 Aligned_cols=94 Identities=18% Similarity=0.046 Sum_probs=63.2
Q ss_pred EeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-
Q 001926 734 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 811 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd- 811 (995)
+.+.||+.++|+.+.+. |.++|-|++.+.++..+++.++-.. +|.. +++-++.. ..+.+ ...|.+-++ .+|.+
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd~-iv~s~~~~-~~KP~-p~~~~~~~~-~~~~~p 166 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDA-HLDL-LLSTHTFG-YPKED-QRLWQAVAE-HTGLKA 166 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHH-HCCE-EEEeeeCC-CCCCC-HHHHHHHHH-HcCCCh
Confidence 67899999999999874 8999999999999999998776443 6775 55444322 12221 112333344 45766
Q ss_pred CcEEEEcCCCcccccCccccc
Q 001926 812 SAVVIIDDSVRVWPHNKLNLI 832 (995)
Q Consensus 812 s~VVIVDDsp~vw~~qpdNgI 832 (995)
+.+|+|+|++.-...-...++
T Consensus 167 ~~~l~igDs~~di~aA~~aG~ 187 (224)
T PRK14988 167 ERTLFIDDSEPILDAAAQFGI 187 (224)
T ss_pred HHEEEEcCCHHHHHHHHHcCC
Confidence 889999999754432234454
No 89
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=89.31 E-value=1.3 Score=48.10 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=61.2
Q ss_pred HHhhhHHHhhhhcCCCeEEEEeCCCceeecccC------C--CCCCc-hhhhhhhhhccccCCCcceeEEeccceEEEee
Q 001926 666 RTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKF------H--EVDPV-HDEILRKKEEQDREKPHRHLFRFPHMGMWTKL 736 (995)
Q Consensus 666 ~akrL~~q~~LLs~kKLTLVLDLDETLVHSs~~------~--eldP~-~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKL 736 (995)
.++....+..+-..+|..+|||+|||++..... . .+++. .++|+... --..
T Consensus 62 ~a~~y~~~~~~~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~--------------------~apa 121 (229)
T TIGR01675 62 EAYFYAKSLALSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKG--------------------AAPA 121 (229)
T ss_pred HHHHHHHHhhccCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcC--------------------CCCC
Confidence 444444444445679999999999999976521 0 01110 11222110 0135
Q ss_pred cccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecC
Q 001926 737 RPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 786 (995)
Q Consensus 737 RPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRd 786 (995)
-|++.+|++++.+ -++|++.|.-.....+..++.|.-.|--.-.+|+-|.
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~ 172 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRG 172 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecC
Confidence 6899999999865 6999999999887766666666545511014566564
No 90
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=88.99 E-value=0.57 Score=47.91 Aligned_cols=85 Identities=20% Similarity=0.184 Sum_probs=60.7
Q ss_pred EeecccHHHHHHHHhccceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-C
Q 001926 734 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 812 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s 812 (995)
+...|++.++|+++.+.|.++|.|+|...++...+..+. =..+|.. ++.-++.+ ..+.+ ...|..-++ .+|-+ +
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~g-l~~~Fd~-v~~s~~~g-~~KP~-~~~f~~~~~-~~g~~p~ 172 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLG-LLDYFDA-VFISEDVG-VAKPD-PEIFEYALE-KLGVPPE 172 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcC-Chhhhhe-EEEecccc-cCCCC-cHHHHHHHH-HcCCCcc
Confidence 678899999999999889999999999999999999876 3347876 55445443 23321 112223333 35665 8
Q ss_pred cEEEEcCCCcc
Q 001926 813 AVVIIDDSVRV 823 (995)
Q Consensus 813 ~VVIVDDsp~v 823 (995)
.+++|||+...
T Consensus 173 ~~l~VgD~~~~ 183 (229)
T COG1011 173 EALFVGDSLEN 183 (229)
T ss_pred eEEEECCChhh
Confidence 89999999743
No 91
>PRK11587 putative phosphatase; Provisional
Probab=88.79 E-value=0.71 Score=47.89 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=58.9
Q ss_pred EEeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC
Q 001926 733 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 811 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd 811 (995)
.+.+.||+.+||+.+.+ .|.++|.|++...++..+++...-. +|. -+++.++.. ..+++ ...+.+-+. .+|..
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~--~~~-~i~~~~~~~-~~KP~-p~~~~~~~~-~~g~~ 154 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP--APE-VFVTAERVK-RGKPE-PDAYLLGAQ-LLGLA 154 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC--Ccc-EEEEHHHhc-CCCCC-cHHHHHHHH-HcCCC
Confidence 46789999999999975 5999999999999988877765532 343 356555432 12321 223445554 45665
Q ss_pred -CcEEEEcCCCccc
Q 001926 812 -SAVVIIDDSVRVW 824 (995)
Q Consensus 812 -s~VVIVDDsp~vw 824 (995)
+.+|+|+|++.-.
T Consensus 155 p~~~l~igDs~~di 168 (218)
T PRK11587 155 PQECVVVEDAPAGV 168 (218)
T ss_pred cccEEEEecchhhh
Confidence 8899999997443
No 92
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=88.78 E-value=0.37 Score=48.08 Aligned_cols=86 Identities=13% Similarity=0.073 Sum_probs=59.4
Q ss_pred EeecccHHHHHHHHhccceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-C
Q 001926 734 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 812 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s 812 (995)
+.+-|+ .++|+.+.+.+.++|-|++.+.+++.+++.+.-.+ ||.. +++.+++. ..+++ ...+.+-++ .+|.+ +
T Consensus 87 ~~~~~~-~e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~fd~-i~~~~~~~-~~KP~-p~~~~~~~~-~~~~~~~ 160 (188)
T PRK10725 87 VEPLPL-IEVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YFDA-VVAADDVQ-HHKPA-PDTFLRCAQ-LMGVQPT 160 (188)
T ss_pred CCCccH-HHHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-HceE-EEehhhcc-CCCCC-hHHHHHHHH-HcCCCHH
Confidence 345676 48999998879999999999999999999887554 7874 77766542 22221 112333333 45666 7
Q ss_pred cEEEEcCCCcccc
Q 001926 813 AVVIIDDSVRVWP 825 (995)
Q Consensus 813 ~VVIVDDsp~vw~ 825 (995)
.+|+|+|++.-..
T Consensus 161 ~~l~igDs~~di~ 173 (188)
T PRK10725 161 QCVVFEDADFGIQ 173 (188)
T ss_pred HeEEEeccHhhHH
Confidence 8999999965443
No 93
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=88.71 E-value=0.74 Score=46.66 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=28.7
Q ss_pred cccHHHHHHHHh-ccceEEEEcCCchHHHHHHHHHHc
Q 001926 737 RPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLD 772 (995)
Q Consensus 737 RPgL~EFLeeLS-k~YEIvIFTAGtkeYAd~VLdiLD 772 (995)
-|...+.|+++. +-+.++|.|.-....+..+++.+.
T Consensus 17 ~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 53 (254)
T PF08282_consen 17 SPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELG 53 (254)
T ss_dssp CHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTT
T ss_pred CHHHHHHHHhhcccceEEEEEccCccccccccccccc
Confidence 355667788777 568999999999999998888665
No 94
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=88.65 E-value=0.66 Score=51.10 Aligned_cols=28 Identities=39% Similarity=0.565 Sum_probs=21.8
Q ss_pred hHHHhhhhcCCCeEEEEeCCCceeeccc
Q 001926 670 LEEQKKMFSARKLCLVLDLDHTLLNSAK 697 (995)
Q Consensus 670 L~~q~~LLs~kKLTLVLDLDETLVHSs~ 697 (995)
+.++-+.-+.+++.+|||||||++..+.
T Consensus 68 ~d~~~k~~k~K~~aVvlDlDETvLdNs~ 95 (274)
T COG2503 68 LDTQAKKKKGKKKAVVLDLDETVLDNSA 95 (274)
T ss_pred HHhhhccccCCCceEEEecchHhhcCcc
Confidence 4445556677888999999999998763
No 95
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=88.44 E-value=0.6 Score=54.03 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=62.6
Q ss_pred EeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-
Q 001926 734 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 811 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd- 811 (995)
+.+.||+.+||+.|.+ .+.+.|.|++.+.|++.+++.++-.. ||.. +++.+++. ..+++ ...+.+-+. .+|..
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~-yFd~-Iv~sddv~-~~KP~-Peifl~A~~-~lgl~P 289 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG-FFSV-IVAAEDVY-RGKPD-PEMFIYAAQ-LLNFIP 289 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH-HceE-EEecCcCC-CCCCC-HHHHHHHHH-HcCCCc
Confidence 4578999999999976 49999999999999999999887654 7875 77666542 12221 112344444 46765
Q ss_pred CcEEEEcCCCccc
Q 001926 812 SAVVIIDDSVRVW 824 (995)
Q Consensus 812 s~VVIVDDsp~vw 824 (995)
+.+|+|+|+..-.
T Consensus 290 eecl~IGDS~~DI 302 (381)
T PLN02575 290 ERCIVFGNSNQTV 302 (381)
T ss_pred ccEEEEcCCHHHH
Confidence 8899999987443
No 96
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=88.33 E-value=1.3 Score=44.31 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=47.7
Q ss_pred EeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-
Q 001926 734 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 811 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd- 811 (995)
+.++|+. -|+++.+ .+.++|.|+..+..+..+++.+.-.. +|... .. +. ..++.+...+|.+
T Consensus 29 ~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~-~~~~~---~~------k~----~~~~~~~~~~~~~~ 92 (154)
T TIGR01670 29 FNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITH-LYQGQ---SN------KL----IAFSDILEKLALAP 92 (154)
T ss_pred EechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCE-EEecc---cc------hH----HHHHHHHHHcCCCH
Confidence 4567765 6778775 58999999999999999999887553 44321 00 11 1222222235655
Q ss_pred CcEEEEcCCCc
Q 001926 812 SAVVIIDDSVR 822 (995)
Q Consensus 812 s~VVIVDDsp~ 822 (995)
+.+++|-|+..
T Consensus 93 ~~~~~vGDs~~ 103 (154)
T TIGR01670 93 ENVAYIGDDLI 103 (154)
T ss_pred HHEEEECCCHH
Confidence 78999988863
No 97
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=88.27 E-value=0.43 Score=47.28 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=54.5
Q ss_pred EeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-
Q 001926 734 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 811 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd- 811 (995)
+.+.||+.+||+.+.+. |.++|.|++ .++..+++.++-.+ +|.. ++..++... .+.. ...+.+-++ .+|..
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~-~f~~-v~~~~~~~~-~kp~-~~~~~~~~~-~~~~~~ 159 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD-YFDA-IVDADEVKE-GKPH-PETFLLAAE-LLGVSP 159 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH-HCCE-eeehhhCCC-CCCC-hHHHHHHHH-HcCCCH
Confidence 67899999999999764 899999988 78888888766544 6765 554443221 1111 011223233 34665
Q ss_pred CcEEEEcCCCc
Q 001926 812 SAVVIIDDSVR 822 (995)
Q Consensus 812 s~VVIVDDsp~ 822 (995)
+.+|+|+|+..
T Consensus 160 ~~~v~IgD~~~ 170 (185)
T TIGR02009 160 NECVVFEDALA 170 (185)
T ss_pred HHeEEEeCcHh
Confidence 78999999963
No 98
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=88.17 E-value=1.2 Score=47.31 Aligned_cols=58 Identities=29% Similarity=0.236 Sum_probs=48.6
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHH-hccceEEEEcCC
Q 001926 681 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERA-SKLFEMHLYTMG 759 (995)
Q Consensus 681 KLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeL-Sk~YEIvIFTAG 759 (995)
.+.|++||||||+.... ...|...+.|+++ .+-+.++|-|..
T Consensus 3 ~kli~~DlDGTLl~~~~-------------------------------------~i~~~~~~al~~~~~~g~~v~iaTGR 45 (264)
T COG0561 3 IKLLAFDLDGTLLDSNK-------------------------------------TISPETKEALARLREKGVKVVLATGR 45 (264)
T ss_pred eeEEEEcCCCCccCCCC-------------------------------------ccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 56899999999998742 0467788888877 467999999999
Q ss_pred chHHHHHHHHHHcCCC
Q 001926 760 NKLYATEMAKVLDPKG 775 (995)
Q Consensus 760 tkeYAd~VLdiLDP~g 775 (995)
....+.++++.|...+
T Consensus 46 ~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 46 PLPDVLSILEELGLDG 61 (264)
T ss_pred ChHHHHHHHHHcCCCc
Confidence 9999999999998776
No 99
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=87.68 E-value=0.92 Score=50.65 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=35.1
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhc-----cceEEEE
Q 001926 682 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-----LFEMHLY 756 (995)
Q Consensus 682 LTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk-----~YEIvIF 756 (995)
+.+++||||||+++.. .-|+..+||+.+.. -+.++++
T Consensus 1 ~~~ifD~DGvL~~g~~--------------------------------------~i~ga~eal~~L~~~~~~~g~~~~fl 42 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKK--------------------------------------PIAGASDALRRLNRNQGQLKIPYIFL 42 (321)
T ss_pred CEEEEeCcCceECCcc--------------------------------------ccHHHHHHHHHHhccccccCCCEEEE
Confidence 4689999999998742 14666777777765 5667777
Q ss_pred cCCc----hHHHHHHHHHH
Q 001926 757 TMGN----KLYATEMAKVL 771 (995)
Q Consensus 757 TAGt----keYAd~VLdiL 771 (995)
|+.. +.||+.+.+.+
T Consensus 43 TNn~g~s~~~~~~~l~~~l 61 (321)
T TIGR01456 43 TNGGGFSERARAEEISSLL 61 (321)
T ss_pred ecCCCCCHHHHHHHHHHHc
Confidence 7664 55566554433
No 100
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=87.37 E-value=0.98 Score=49.14 Aligned_cols=85 Identities=19% Similarity=0.148 Sum_probs=58.5
Q ss_pred EeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-
Q 001926 734 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 811 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd- 811 (995)
+.++||+.++|+.+.+ .+.++|.|++...++..+++.++-.+ +|.. +++.+++. ..+.. . ..++.+-..+|..
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~-~f~~-i~~~d~~~-~~Kp~-p-~~~~~~~~~~g~~~ 174 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR-YFRW-IIGGDTLP-QKKPD-P-AALLFVMKMAGVPP 174 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh-hCeE-EEecCCCC-CCCCC-c-HHHHHHHHHhCCCh
Confidence 5679999999999975 59999999999999999999876544 6764 66654322 11211 0 0122222245665
Q ss_pred CcEEEEcCCCcc
Q 001926 812 SAVVIIDDSVRV 823 (995)
Q Consensus 812 s~VVIVDDsp~v 823 (995)
+.+|+|+|+..-
T Consensus 175 ~~~l~IGD~~~D 186 (272)
T PRK13223 175 SQSLFVGDSRSD 186 (272)
T ss_pred hHEEEECCCHHH
Confidence 889999999643
No 101
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=86.97 E-value=0.49 Score=48.38 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=56.7
Q ss_pred EEEeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCC
Q 001926 732 MWTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM 810 (995)
Q Consensus 732 ~yVKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGr 810 (995)
.+..++||+.++|+.+.+ -|.++|.|++....+..++....--..+|.. +++-+++.. .+++ ...|.+-++ .+|.
T Consensus 81 ~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~-v~~s~~~~~-~KP~-p~~~~~~~~-~~~~ 156 (199)
T PRK09456 81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADH-IYLSQDLGM-RKPE-ARIYQHVLQ-AEGF 156 (199)
T ss_pred HHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCE-EEEecccCC-CCCC-HHHHHHHHH-HcCC
Confidence 345689999999999975 5999999999988766554321111235754 665554432 2321 112333344 4676
Q ss_pred C-CcEEEEcCCCcc
Q 001926 811 E-SAVVIIDDSVRV 823 (995)
Q Consensus 811 d-s~VVIVDDsp~v 823 (995)
. +.+|+|||++.-
T Consensus 157 ~p~~~l~vgD~~~d 170 (199)
T PRK09456 157 SAADAVFFDDNADN 170 (199)
T ss_pred ChhHeEEeCCCHHH
Confidence 6 889999999744
No 102
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=86.93 E-value=1.4 Score=45.53 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=30.8
Q ss_pred cccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCC
Q 001926 737 RPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKG 775 (995)
Q Consensus 737 RPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g 775 (995)
.|...+-|+++.+. +.++|.|.-....+..+++.|+..+
T Consensus 20 ~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~ 59 (215)
T TIGR01487 20 SERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSG 59 (215)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCC
Confidence 45566677777655 8999999999988999999888664
No 103
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=86.88 E-value=1.9 Score=44.97 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=35.2
Q ss_pred EeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHH
Q 001926 734 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVL 771 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiL 771 (995)
+.++||+.+||+++.+. +.++|.|++...|++.+++.+
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 68999999999999854 999999999999999999876
No 104
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=86.82 E-value=0.94 Score=46.00 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=54.2
Q ss_pred EeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-
Q 001926 734 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 811 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd- 811 (995)
+.+.||+.++|+++.+. |.++|.|++...+ ..+++.++-.+ +|.. ++..++++ ..+++ ...+.+-++ .+|.+
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~~-~fd~-i~~s~~~~-~~KP~-~~~~~~~~~-~~~~~~ 177 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLLE-YFDF-VVTSYEVG-AEKPD-PKIFQEALE-RAGISP 177 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcHH-hcce-EEeecccC-CCCCC-HHHHHHHHH-HcCCCh
Confidence 36789999999999865 9999999988764 66777665433 6765 55444332 12221 112333343 45666
Q ss_pred CcEEEEcCCC
Q 001926 812 SAVVIIDDSV 821 (995)
Q Consensus 812 s~VVIVDDsp 821 (995)
+.+|+|+|+.
T Consensus 178 ~~~~~IgD~~ 187 (203)
T TIGR02252 178 EEALHIGDSL 187 (203)
T ss_pred hHEEEECCCc
Confidence 8899999985
No 105
>PTZ00445 p36-lilke protein; Provisional
Probab=86.56 E-value=1.2 Score=48.26 Aligned_cols=73 Identities=18% Similarity=0.290 Sum_probs=49.0
Q ss_pred HHHhhhHHHhhhhcCCCeEEEEeCCCceee--cccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHH
Q 001926 665 ERTRRLEEQKKMFSARKLCLVLDLDHTLLN--SAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWT 742 (995)
Q Consensus 665 e~akrL~~q~~LLs~kKLTLVLDLDETLVH--Ss~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~E 742 (995)
+.++.++.. |...+=+.+++|||.|||- |.- ..+|.. | ...+.-..||.+.+
T Consensus 29 ~~~~~~v~~--L~~~GIk~Va~D~DnTlI~~HsgG--~~~~~~----------~------------~~~~~~~~tpefk~ 82 (219)
T PTZ00445 29 ESADKFVDL--LNECGIKVIASDFDLTMITKHSGG--YIDPDN----------D------------DIRVLTSVTPDFKI 82 (219)
T ss_pred HHHHHHHHH--HHHcCCeEEEecchhhhhhhhccc--ccCCCc----------c------------hhhhhccCCHHHHH
Confidence 445555432 4556778999999999985 321 112210 0 01234568999999
Q ss_pred HHHHHhc-cceEEEEcCCchHH
Q 001926 743 FLERASK-LFEMHLYTMGNKLY 763 (995)
Q Consensus 743 FLeeLSk-~YEIvIFTAGtkeY 763 (995)
+++.|.+ -+.|+|-|-+.+.-
T Consensus 83 ~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 83 LGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred HHHHHHHCCCeEEEEEccchhh
Confidence 9999985 69999999998865
No 106
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=86.55 E-value=1.3 Score=46.19 Aligned_cols=50 Identities=10% Similarity=0.231 Sum_probs=41.7
Q ss_pred EEeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCCceeeceE
Q 001926 733 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRV 782 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RI 782 (995)
.+.+|||+.+||+.+.+. +.++|.|++...|++.+++.+.....++.+++
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~ 118 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEA 118 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEecee
Confidence 478999999999999875 89999999999999999998865444555444
No 107
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=86.16 E-value=1.5 Score=46.54 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=28.6
Q ss_pred ccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcC
Q 001926 738 PGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDP 773 (995)
Q Consensus 738 PgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP 773 (995)
|...++|+++.+. ..++|.|.-+...+..+++.|.-
T Consensus 18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~ 54 (225)
T TIGR02461 18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGV 54 (225)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 3467889988865 88999998888888888887764
No 108
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=85.75 E-value=1 Score=49.50 Aligned_cols=96 Identities=21% Similarity=0.223 Sum_probs=60.3
Q ss_pred EeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeec-eEEecCCCCCCCCCCCCCCcccccccccCCC
Q 001926 734 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAG-RVISRGDDGDPFDGDERVPKSKDLEGVLGME 811 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~-RIySRddc~~~~dG~er~~yiKDLsrVLGrd 811 (995)
+.+.||+.+||+++.+ .|.++|.|++...++..+++.+.-.+ +|.. .++..+++. ..++. ...+.+-++ .+|.+
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~-~~KP~-p~~~~~a~~-~~~~~ 218 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPE-RAQGLDVFAGDDVP-KKKPD-PDIYNLAAE-TLGVD 218 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcccc-ccCceEEEeccccC-CCCCC-HHHHHHHHH-HhCcC
Confidence 5789999999999975 59999999999999999998663111 3332 133444332 12211 012233333 45666
Q ss_pred -CcEEEEcCCCcccccCcccccc
Q 001926 812 -SAVVIIDDSVRVWPHNKLNLIV 833 (995)
Q Consensus 812 -s~VVIVDDsp~vw~~qpdNgI~ 833 (995)
+.+|+|+|+..-+..-...++.
T Consensus 219 p~~~l~IGDs~~Di~aA~~aG~~ 241 (286)
T PLN02779 219 PSRCVVVEDSVIGLQAAKAAGMR 241 (286)
T ss_pred hHHEEEEeCCHHhHHHHHHcCCE
Confidence 8899999998555432334443
No 109
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=85.53 E-value=1.9 Score=46.44 Aligned_cols=59 Identities=20% Similarity=0.211 Sum_probs=41.2
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhcc-ceEEEEc
Q 001926 679 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYT 757 (995)
Q Consensus 679 ~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~-YEIvIFT 757 (995)
+.++.+++||||||++.... + -|-..+-|+++.+. ..++|.|
T Consensus 5 ~~~~lI~~DlDGTLL~~~~~--i-----------------------------------~~~~~~ai~~l~~~Gi~~viaT 47 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHTY--D-----------------------------------WQPAAPWLTRLREAQVPVILCS 47 (271)
T ss_pred CCCeEEEEeCccCCcCCCCc--C-----------------------------------cHHHHHHHHHHHHcCCeEEEEc
Confidence 45678999999999986320 1 12234556666644 7888888
Q ss_pred CCchHHHHHHHHHHcCC
Q 001926 758 MGNKLYATEMAKVLDPK 774 (995)
Q Consensus 758 AGtkeYAd~VLdiLDP~ 774 (995)
.-....+..+++.|+..
T Consensus 48 GR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 48 SKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 88888888888887654
No 110
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=85.51 E-value=1.3 Score=45.21 Aligned_cols=81 Identities=19% Similarity=0.121 Sum_probs=56.2
Q ss_pred eecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-C
Q 001926 735 KLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 812 (995)
Q Consensus 735 KLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s 812 (995)
+..|+..++|+.+.+. +.++|.|++.+.+++.+++.+.-.. +|.. +++.++.. . +.. ...+.+-++ .+|.+ +
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-~f~~-~~~~~~~~-~-KP~-p~~~~~~~~-~~~~~~~ 179 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEI-LFPV-QIWMEDCP-P-KPN-PEPLILAAK-ALGVEAC 179 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchh-hCCE-EEeecCCC-C-CcC-HHHHHHHHH-HhCcCcc
Confidence 3455669999999865 9999999999999999999887654 7764 56555432 1 321 112333343 35665 7
Q ss_pred cEEEEcCCC
Q 001926 813 AVVIIDDSV 821 (995)
Q Consensus 813 ~VVIVDDsp 821 (995)
.+|+|+|++
T Consensus 180 ~~i~vGD~~ 188 (197)
T TIGR01548 180 HAAMVGDTV 188 (197)
T ss_pred cEEEEeCCH
Confidence 899999985
No 111
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=85.32 E-value=2.5 Score=44.76 Aligned_cols=58 Identities=24% Similarity=0.285 Sum_probs=39.2
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhcc-ceEEEEcCC
Q 001926 681 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMG 759 (995)
Q Consensus 681 KLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~-YEIvIFTAG 759 (995)
.+.+++||||||+.... .+ .|...+-|+++.+. ..++|.|.-
T Consensus 3 ~kli~~DlDGTLl~~~~--~i-----------------------------------~~~~~~ai~~~~~~G~~~~iaTGR 45 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK--TI-----------------------------------LPESLEALARAREAGYKVIIVTGR 45 (272)
T ss_pred ccEEEEeCCCceECCCC--cc-----------------------------------CHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35789999999997642 11 23344556666644 778888877
Q ss_pred chHHHHHHHHHHcCCC
Q 001926 760 NKLYATEMAKVLDPKG 775 (995)
Q Consensus 760 tkeYAd~VLdiLDP~g 775 (995)
....+..+++.|+..+
T Consensus 46 ~~~~~~~~~~~l~~~~ 61 (272)
T PRK10530 46 HHVAIHPFYQALALDT 61 (272)
T ss_pred ChHHHHHHHHhcCCCC
Confidence 7777777777776543
No 112
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=85.18 E-value=1.8 Score=45.87 Aligned_cols=38 Identities=16% Similarity=0.051 Sum_probs=29.8
Q ss_pred cccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCC
Q 001926 737 RPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPK 774 (995)
Q Consensus 737 RPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~ 774 (995)
.|...+.|+++.+. +.++|.|......+..+++.|...
T Consensus 18 ~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 18 SPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 34566778887754 899999999988888888887655
No 113
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=85.13 E-value=1.6 Score=46.94 Aligned_cols=87 Identities=16% Similarity=0.113 Sum_probs=60.0
Q ss_pred EeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCC-C
Q 001926 734 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGM-E 811 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGr-d 811 (995)
+.+-||+.++|+.+.+ -|.++|-|++.+.++..+++.+.-.+ +|...+++.++.. ..+.+ ...+.+-++ .+|. +
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~d~i~~~~~~~-~~KP~-p~~~~~a~~-~l~~~~ 175 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQG-YRPDHVVTTDDVP-AGRPY-PWMALKNAI-ELGVYD 175 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCceEEEcCCcCC-CCCCC-hHHHHHHHH-HcCCCC
Confidence 5678999999999975 59999999999999999999776555 3323466665432 12221 112344444 3564 3
Q ss_pred -CcEEEEcCCCccc
Q 001926 812 -SAVVIIDDSVRVW 824 (995)
Q Consensus 812 -s~VVIVDDsp~vw 824 (995)
+.+|+|+|++.-.
T Consensus 176 ~~e~l~IGDs~~Di 189 (267)
T PRK13478 176 VAACVKVDDTVPGI 189 (267)
T ss_pred CcceEEEcCcHHHH
Confidence 6899999998433
No 114
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=84.97 E-value=1.9 Score=45.85 Aligned_cols=57 Identities=19% Similarity=0.146 Sum_probs=41.6
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhcc-ceEEEEcCC
Q 001926 681 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMG 759 (995)
Q Consensus 681 KLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~-YEIvIFTAG 759 (995)
.+.+++||||||++... . +-|...+-|+++.+. +.++|.|.-
T Consensus 3 ~kli~~DlDGTLl~~~~--~-----------------------------------i~~~~~~ai~~l~~~G~~~~iaTGR 45 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH--T-----------------------------------ISPAVKQAIAAARAKGVNVVLTTGR 45 (270)
T ss_pred eEEEEEecCCcCcCCCC--c-----------------------------------cCHHHHHHHHHHHHCCCEEEEecCC
Confidence 35789999999997642 1 123345677777755 788888888
Q ss_pred chHHHHHHHHHHcCC
Q 001926 760 NKLYATEMAKVLDPK 774 (995)
Q Consensus 760 tkeYAd~VLdiLDP~ 774 (995)
....+..+++.|...
T Consensus 46 ~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 46 PYAGVHRYLKELHME 60 (270)
T ss_pred ChHHHHHHHHHhCCC
Confidence 888888888877654
No 115
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=84.77 E-value=1.5 Score=45.27 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=29.4
Q ss_pred HHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCC
Q 001926 740 IWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPK 774 (995)
Q Consensus 740 L~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~ 774 (995)
..+.|+++.+. ..++|.|......+..+++.|.-.
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 56788888765 799999999999999999988643
No 116
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=84.52 E-value=1.6 Score=42.98 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=41.0
Q ss_pred EeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCCceeeceEE
Q 001926 734 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 783 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIy 783 (995)
+.++|++.++|+.+.+. +.++|.|++.+.|++.+++.+.-. .+|..++.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~~~~~ 121 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID-DVFANRLE 121 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc-hheeeeEE
Confidence 56899999999999754 899999999999999999988655 36666554
No 117
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=84.03 E-value=0.68 Score=47.40 Aligned_cols=87 Identities=25% Similarity=0.158 Sum_probs=52.0
Q ss_pred EEeecccHHHHHHHHhc-cceEEEEcCCchHH--HHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccC
Q 001926 733 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLY--ATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG 809 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk-~YEIvIFTAGtkeY--Ad~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLG 809 (995)
.+.+.||+.+||++|.+ -|.++|.|++...+ +...+..++- ..+|.. ++.-+++. ..+++ ...|.+-++ .+|
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l-~~~fd~-v~~s~~~~-~~KP~-p~~~~~~~~-~~g 166 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDI-MALFDA-VVESCLEG-LRKPD-PRIYQLMLE-RLG 166 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhh-HhhCCE-EEEeeecC-CCCCC-HHHHHHHHH-HcC
Confidence 46689999999999986 49999999987655 3222222221 135664 55433322 12321 112333344 467
Q ss_pred CC-CcEEEEcCCCccc
Q 001926 810 ME-SAVVIIDDSVRVW 824 (995)
Q Consensus 810 rd-s~VVIVDDsp~vw 824 (995)
.. +.+|+|||+..-.
T Consensus 167 ~~~~~~l~i~D~~~di 182 (211)
T TIGR02247 167 VAPEECVFLDDLGSNL 182 (211)
T ss_pred CCHHHeEEEcCCHHHH
Confidence 66 7899999986433
No 118
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=83.64 E-value=2.6 Score=42.29 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=42.7
Q ss_pred EeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEe
Q 001926 734 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 784 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIyS 784 (995)
+.++||+.++|+.+.+ -+.++|.|++...+++.+++.+.... +|...+..
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~~~~~~~ 129 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY-VYSNELVF 129 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe-EEEEEEEE
Confidence 6789999999999975 59999999999999999999987654 67665554
No 119
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=83.55 E-value=2.9 Score=43.21 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=41.9
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhcc-ceEEEEcCCc
Q 001926 682 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMGN 760 (995)
Q Consensus 682 LTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~-YEIvIFTAGt 760 (995)
+.|++||||||+.... .+.|...+-|+++.+. ..++|.|.-.
T Consensus 4 kli~~DlDGTLl~~~~-------------------------------------~i~~~~~~al~~l~~~G~~~~iaTGR~ 46 (230)
T PRK01158 4 KAIAIDIDGTITDKDR-------------------------------------RLSLKAVEAIRKAEKLGIPVILATGNV 46 (230)
T ss_pred eEEEEecCCCcCCCCC-------------------------------------ccCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 5789999999996531 0244556667777654 7888888888
Q ss_pred hHHHHHHHHHHcCCC
Q 001926 761 KLYATEMAKVLDPKG 775 (995)
Q Consensus 761 keYAd~VLdiLDP~g 775 (995)
...+..+++.|...+
T Consensus 47 ~~~~~~~~~~l~~~~ 61 (230)
T PRK01158 47 LCFARAAAKLIGTSG 61 (230)
T ss_pred hHHHHHHHHHhCCCC
Confidence 888888888887554
No 120
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=83.30 E-value=2.5 Score=41.03 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=54.9
Q ss_pred EEeecccHHHHHHHHh-ccceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC
Q 001926 733 WTKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 811 (995)
Q Consensus 733 yVKLRPgL~EFLeeLS-k~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd 811 (995)
.....||+.++|+.+. +-+.++|.|++.+.++..+++.+ - ..+|. .++..++.. .++. ...+.+-++ .+|..
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l-~~~f~-~i~~~~~~~--~Kp~-~~~~~~~~~-~~~~~ 134 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-L-GDYFD-LILGSDEFG--AKPE-PEIFLAALE-SLGLP 134 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-H-HhcCc-EEEecCCCC--CCcC-HHHHHHHHH-HcCCC
Confidence 3455699999999996 45899999999999999999984 1 23565 466665432 2221 112333333 34443
Q ss_pred CcEEEEcCCC
Q 001926 812 SAVVIIDDSV 821 (995)
Q Consensus 812 s~VVIVDDsp 821 (995)
..+|+|.|+.
T Consensus 135 ~~~l~iGDs~ 144 (154)
T TIGR01549 135 PEVLHVGDNL 144 (154)
T ss_pred CCEEEEeCCH
Confidence 3799999984
No 121
>PLN02940 riboflavin kinase
Probab=83.29 E-value=1 Score=51.67 Aligned_cols=84 Identities=15% Similarity=0.106 Sum_probs=58.1
Q ss_pred EeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHH-HHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC
Q 001926 734 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAK-VLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 811 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLd-iLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd 811 (995)
+.+.||+.++|+.|.+. +.+.|.|++.+.++..+++ .++-. .+|.. +++.+++.. .+.+ ...+.+-++ .+|-.
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~-~~Fd~-ii~~d~v~~-~KP~-p~~~~~a~~-~lgv~ 166 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK-ESFSV-IVGGDEVEK-GKPS-PDIFLEAAK-RLNVE 166 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH-hhCCE-EEehhhcCC-CCCC-HHHHHHHHH-HcCCC
Confidence 56789999999999755 8999999999999998886 44433 36775 666665432 2221 112333344 35655
Q ss_pred -CcEEEEcCCCc
Q 001926 812 -SAVVIIDDSVR 822 (995)
Q Consensus 812 -s~VVIVDDsp~ 822 (995)
+++|+|+|+..
T Consensus 167 p~~~l~VGDs~~ 178 (382)
T PLN02940 167 PSNCLVIEDSLP 178 (382)
T ss_pred hhHEEEEeCCHH
Confidence 78999999984
No 122
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=82.65 E-value=2 Score=44.24 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=58.9
Q ss_pred EeecccHHHHHHHHh-ccceEEEEcCCchHHHHHHHHHHcCC-CceeeceEEecCCCCCCCCCCCCCCcccccccccCCC
Q 001926 734 TKLRPGIWTFLERAS-KLFEMHLYTMGNKLYATEMAKVLDPK-GVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME 811 (995)
Q Consensus 734 VKLRPgL~EFLeeLS-k~YEIvIFTAGtkeYAd~VLdiLDP~-g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd 811 (995)
+.+.||+.+||+.+. +-|.+.|.|++...++..+++.++-. +.+|.. +++.++-. ..+.. ...+.+=+. .+|..
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~-i~~~~~~~-~~KP~-p~~~~~a~~-~~~~~ 161 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDA-VVCPSDVA-AGRPA-PDLILRAME-LTGVQ 161 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCE-EEcCCcCC-CCCCC-HHHHHHHHH-HcCCC
Confidence 478999999999997 46999999999999999999988755 257864 66554321 11211 011223333 34542
Q ss_pred --CcEEEEcCCCc
Q 001926 812 --SAVVIIDDSVR 822 (995)
Q Consensus 812 --s~VVIVDDsp~ 822 (995)
+.+|+|+|++.
T Consensus 162 ~~~~~~~igD~~~ 174 (220)
T TIGR03351 162 DVQSVAVAGDTPN 174 (220)
T ss_pred ChhHeEEeCCCHH
Confidence 78999999973
No 123
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=82.30 E-value=2.2 Score=47.63 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=43.0
Q ss_pred EEeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHH---cCCCceeeceEEe
Q 001926 733 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVL---DPKGVLFAGRVIS 784 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiL---DP~g~lF~~RIyS 784 (995)
-+.+|||+.+||+.|.+. +.++|+|+|...+++.+++.+ ++...++++++..
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f 174 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDF 174 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEE
Confidence 478999999999999765 899999999999999999964 3455677777643
No 124
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=81.84 E-value=2.5 Score=43.14 Aligned_cols=36 Identities=25% Similarity=0.177 Sum_probs=30.3
Q ss_pred cccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHc
Q 001926 737 RPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLD 772 (995)
Q Consensus 737 RPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLD 772 (995)
.|.+.+.|+++.+. ..++|.|.....++..+++.++
T Consensus 19 ~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 55 (204)
T TIGR01484 19 SPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP 55 (204)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC
Confidence 56778889998876 7899999999999999988753
No 125
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=81.49 E-value=1.9 Score=46.17 Aligned_cols=85 Identities=16% Similarity=0.181 Sum_probs=56.6
Q ss_pred EEeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHc---CCCceeeceEEecCCCCCCCCCCCCCCccccccccc
Q 001926 733 WTKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLD---PKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVL 808 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLD---P~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVL 808 (995)
...+.|++.++|+++.+ -|.++|+|++...+...+++..+ -.. +|.. +|... .+ .+.+ ...|.+-++ .+
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~-~f~~-~fd~~-~g--~KP~-p~~y~~i~~-~l 165 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTP-YFSG-YFDTT-VG--LKTE-AQSYVKIAG-QL 165 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhh-hcce-EEEeC-cc--cCCC-HHHHHHHHH-Hh
Confidence 35689999999999975 58999999999999998887753 222 4554 34211 11 1211 113444454 35
Q ss_pred CCC-CcEEEEcCCCccc
Q 001926 809 GME-SAVVIIDDSVRVW 824 (995)
Q Consensus 809 Grd-s~VVIVDDsp~vw 824 (995)
|.+ +.+|+|+|+..-.
T Consensus 166 gv~p~e~lfVgDs~~Di 182 (220)
T TIGR01691 166 GSPPREILFLSDIINEL 182 (220)
T ss_pred CcChhHEEEEeCCHHHH
Confidence 766 8899999997433
No 126
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=81.41 E-value=3.3 Score=44.42 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=38.8
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhcc-ceEEEEcCCc
Q 001926 682 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMGN 760 (995)
Q Consensus 682 LTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~-YEIvIFTAGt 760 (995)
+.+++||||||+.... . +-|...+-|+++.+. ..++|.|.-.
T Consensus 3 kli~~DlDGTLl~~~~--~-----------------------------------i~~~~~~ai~~l~~~G~~~~iaTGR~ 45 (272)
T PRK15126 3 RLAAFDMDGTLLMPDH--H-----------------------------------LGEKTLSTLARLRERDITLTFATGRH 45 (272)
T ss_pred cEEEEeCCCcCcCCCC--c-----------------------------------CCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 4789999999997532 1 123344556666644 6777888777
Q ss_pred hHHHHHHHHHHcCCC
Q 001926 761 KLYATEMAKVLDPKG 775 (995)
Q Consensus 761 keYAd~VLdiLDP~g 775 (995)
...+..+++.|+..+
T Consensus 46 ~~~~~~~~~~l~~~~ 60 (272)
T PRK15126 46 VLEMQHILGALSLDA 60 (272)
T ss_pred HHHHHHHHHHcCCCC
Confidence 777777877776554
No 127
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=81.29 E-value=1.5 Score=47.88 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=59.4
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhh---ccccCCCcceeE-----EeccceEEEeecccHHHHHHHHhc-c
Q 001926 680 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKE---EQDREKPHRHLF-----RFPHMGMWTKLRPGIWTFLERASK-L 750 (995)
Q Consensus 680 kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~E---e~D~~~P~~~lF-----~~~~~~~yVKLRPgL~EFLeeLSk-~ 750 (995)
....+|+|+|+||+-....- ..+.+.++...+- ..+........| -+....-+...-|.+.+|++.+++ .
T Consensus 19 ~~tLvvfDiDdTLi~~~~~l-g~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~ 97 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPL-GSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKG 97 (252)
T ss_pred CCeEEEEEcchhhhcCcccc-CCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCC
Confidence 67889999999999776321 1233332321110 000000100111 001123355678999999999995 5
Q ss_pred ceEEEEcCCchHHHHHHHHHHcCCCceeec
Q 001926 751 FEMHLYTMGNKLYATEMAKVLDPKGVLFAG 780 (995)
Q Consensus 751 YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~ 780 (995)
.-++.+|+....|...-++.|---|--|..
T Consensus 98 ~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~ 127 (252)
T PF11019_consen 98 IPVIALTARGPNMEDWTLRELKSLGIDFSS 127 (252)
T ss_pred CcEEEEcCCChhhHHHHHHHHHHCCCCccc
Confidence 999999999999999988877444433443
No 128
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=81.25 E-value=3.3 Score=44.18 Aligned_cols=35 Identities=20% Similarity=0.064 Sum_probs=28.6
Q ss_pred cHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcC
Q 001926 739 GIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDP 773 (995)
Q Consensus 739 gL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP 773 (995)
...++|+.+.+. +.++|.|.-....+..+++.++.
T Consensus 20 ~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~ 55 (256)
T TIGR01486 20 PAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGL 55 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 367888888875 88999998888888888888764
No 129
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=81.23 E-value=2.1 Score=47.04 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=56.0
Q ss_pred EeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-
Q 001926 734 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 811 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd- 811 (995)
+.+.||+.++|++|.+ .+.+.|.|++.+.++..+++.++-.. +|.. +++.+.. . -+. ..+.+-+. .++.+
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~-~F~~-vi~~~~~-~-~k~---~~~~~~l~-~~~~~p 212 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS-LFSV-VQAGTPI-L-SKR---RALSQLVA-REGWQP 212 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-heEE-EEecCCC-C-CCH---HHHHHHHH-HhCcCh
Confidence 5678999999999985 58999999999999999999987654 6764 5443321 0 010 01222222 23545
Q ss_pred CcEEEEcCCCc
Q 001926 812 SAVVIIDDSVR 822 (995)
Q Consensus 812 s~VVIVDDsp~ 822 (995)
+++|+|+|+..
T Consensus 213 ~~~l~IGDs~~ 223 (273)
T PRK13225 213 AAVMYVGDETR 223 (273)
T ss_pred hHEEEECCCHH
Confidence 78999999973
No 130
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=80.93 E-value=2.5 Score=44.48 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=43.6
Q ss_pred EeecccHHHHHHHHhccceEEEEcCCchHHHHHHHHHHcCCCceeeceEEe
Q 001926 734 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 784 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIyS 784 (995)
+.++||+.+||+.+.+.+.++|-|++...|+.++++.|+-+. +|.+++..
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~-~~an~l~~ 116 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LLCHKLEI 116 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCch-hhceeeEE
Confidence 578999999999999888999999999999999999987664 67766654
No 131
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=80.70 E-value=2.6 Score=42.76 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=41.4
Q ss_pred EEeecccHHHHHHHHhccceEEEEcCCchHHHHHHHHHHcCCCceeeceE
Q 001926 733 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRV 782 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RI 782 (995)
.+.++||+.+||+.+.+.+.++|.|++...|++.+++.++-.. +|.+++
T Consensus 66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~-~f~~~~ 114 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPT-LFCHSL 114 (205)
T ss_pred hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCch-hhcceE
Confidence 3567899999999998779999999999999999999887553 666544
No 132
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=80.40 E-value=3 Score=42.29 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=23.6
Q ss_pred ecccHHHHHHHHhcc-ceEEEEcCCchHHHH
Q 001926 736 LRPGIWTFLERASKL-FEMHLYTMGNKLYAT 765 (995)
Q Consensus 736 LRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd 765 (995)
..|++.++++++.+. |.+++.|.....-+.
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~ 58 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARPIGQAD 58 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHH
Confidence 479999999999865 777777777666654
No 133
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=80.16 E-value=3.5 Score=42.43 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=23.7
Q ss_pred ccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHc
Q 001926 738 PGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLD 772 (995)
Q Consensus 738 PgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLD 772 (995)
|...+-|+++.+. ..++|.|.-....+.++++.|.
T Consensus 18 ~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~ 53 (225)
T TIGR01482 18 ESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIG 53 (225)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhC
Confidence 3344556666544 6788888877777777777776
No 134
>PRK10976 putative hydrolase; Provisional
Probab=79.70 E-value=4.2 Score=43.26 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=36.3
Q ss_pred eEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhc-cceEEEEcCCc
Q 001926 682 LCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGN 760 (995)
Q Consensus 682 LTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk-~YEIvIFTAGt 760 (995)
+.+++||||||++... .++ |...+-|+++.+ -..++|.|.-.
T Consensus 3 kli~~DlDGTLl~~~~--~is-----------------------------------~~~~~ai~~l~~~G~~~~iaTGR~ 45 (266)
T PRK10976 3 QVVASDLDGTLLSPDH--TLS-----------------------------------PYAKETLKLLTARGIHFVFATGRH 45 (266)
T ss_pred eEEEEeCCCCCcCCCC--cCC-----------------------------------HHHHHHHHHHHHCCCEEEEEcCCC
Confidence 5789999999997642 122 223444555554 36777777776
Q ss_pred hHHHHHHHHHHcCCC
Q 001926 761 KLYATEMAKVLDPKG 775 (995)
Q Consensus 761 keYAd~VLdiLDP~g 775 (995)
...+..+++.|+..+
T Consensus 46 ~~~~~~~~~~l~~~~ 60 (266)
T PRK10976 46 HVDVGQIRDNLEIKS 60 (266)
T ss_pred hHHHHHHHHhcCCCC
Confidence 666667777665443
No 135
>PRK10444 UMP phosphatase; Provisional
Probab=79.49 E-value=3.2 Score=45.07 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=32.7
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhc-cceEEEEcCCch
Q 001926 683 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMGNK 761 (995)
Q Consensus 683 TLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk-~YEIvIFTAGtk 761 (995)
.+++||||||++... .-|+..+||+.+.+ -..+++.|+...
T Consensus 3 ~v~~DlDGtL~~~~~--------------------------------------~~p~a~~~l~~L~~~g~~~~~~Tn~~~ 44 (248)
T PRK10444 3 NVICDIDGVLMHDNV--------------------------------------AVPGAAEFLHRILDKGLPLVLLTNYPS 44 (248)
T ss_pred EEEEeCCCceEeCCe--------------------------------------eCccHHHHHHHHHHCCCeEEEEeCCCC
Confidence 689999999998742 13566666666664 366666666655
Q ss_pred HHHHHHHHHH
Q 001926 762 LYATEMAKVL 771 (995)
Q Consensus 762 eYAd~VLdiL 771 (995)
.=+..+++.|
T Consensus 45 ~~~~~~~~~l 54 (248)
T PRK10444 45 QTGQDLANRF 54 (248)
T ss_pred CCHHHHHHHH
Confidence 4444444444
No 136
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=78.99 E-value=1.7 Score=45.99 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=64.3
Q ss_pred EeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-
Q 001926 734 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 811 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd- 811 (995)
++..||+.+||+.+... .-+.+-|.+.+..+..+++.+.-.. +|...++ .++.... ++ ....|.+-.. .||.+
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f~~~v~-~~dv~~~-KP-~Pd~yL~Aa~-~Lgv~P 159 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YFDVIVT-ADDVARG-KP-APDIYLLAAE-RLGVDP 159 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hcchhcc-HHHHhcC-CC-CCHHHHHHHH-HcCCCh
Confidence 68999999999999987 9999999999999999999887665 7887554 3433221 22 1224667776 47776
Q ss_pred CcEEEEcCCCc
Q 001926 812 SAVVIIDDSVR 822 (995)
Q Consensus 812 s~VVIVDDsp~ 822 (995)
.++|+|+|++.
T Consensus 160 ~~CvviEDs~~ 170 (221)
T COG0637 160 EECVVVEDSPA 170 (221)
T ss_pred HHeEEEecchh
Confidence 89999999973
No 137
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=78.82 E-value=3.9 Score=47.57 Aligned_cols=74 Identities=18% Similarity=0.116 Sum_probs=62.3
Q ss_pred hccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCC--CCHHHHHHHhcCCcEecHHHHHHHHH
Q 001926 904 ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSL--GTDKVNWALSTGRFVVHPGWVEASAL 981 (995)
Q Consensus 904 ILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~--gTeKv~~Alk~GI~IVSPdWLedC~~ 981 (995)
.-.|..|+|+|-+- .+...|...+...|=.|+.+++..+.-|||+.. .+-|...|.+.||++|+-.=+.+++.
T Consensus 294 lv~Gm~v~~~~e~~-----~~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~gipl~~d~~fl~~~~ 368 (377)
T PRK05601 294 LVAGMEVVVAPEIT-----MDPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRKGIPLLSDVAFLAAVE 368 (377)
T ss_pred cccCcEEEEeCCcc-----CCHHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhcCCCccCHHHHHHHHH
Confidence 56799999998543 234678888999999999999999999999975 46799999999999999888877765
Q ss_pred h
Q 001926 982 L 982 (995)
Q Consensus 982 ~ 982 (995)
.
T Consensus 369 ~ 369 (377)
T PRK05601 369 R 369 (377)
T ss_pred H
Confidence 4
No 138
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=78.78 E-value=2.9 Score=48.81 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=56.9
Q ss_pred EeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCCC
Q 001926 734 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMES 812 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrds 812 (995)
+.+.||+.++|+++.+ .+.+.|.|++.+.|+..+++.++-.. ||.. +++.++....-++ ..+.+-+.+ ++ .+
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f~~-i~~~d~v~~~~kP---~~~~~al~~-l~-~~ 401 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WVTE-TFSIEQINSLNKS---DLVKSILNK-YD-IK 401 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hcce-eEecCCCCCCCCc---HHHHHHHHh-cC-cc
Confidence 5778999999999975 59999999999999999999887654 6765 5654432100111 123333332 22 26
Q ss_pred cEEEEcCCCc
Q 001926 813 AVVIIDDSVR 822 (995)
Q Consensus 813 ~VVIVDDsp~ 822 (995)
.+|+|.|++.
T Consensus 402 ~~v~VGDs~~ 411 (459)
T PRK06698 402 EAAVVGDRLS 411 (459)
T ss_pred eEEEEeCCHH
Confidence 7999999974
No 139
>PHA02597 30.2 hypothetical protein; Provisional
Probab=78.76 E-value=1 Score=45.71 Aligned_cols=95 Identities=13% Similarity=0.134 Sum_probs=57.1
Q ss_pred EEeecccHHHHHHHHhccceEEEEcCCchHHHHHHHHHHcCCC---ceeeceEEecCCCCCCCCCCCCCCcccccccccC
Q 001926 733 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKG---VLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLG 809 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk~YEIvIFTAGtkeYAd~VLdiLDP~g---~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLG 809 (995)
.+.+.||+.++|++|.+.|.+++-|++.......+++.+.-.+ .+|.. +++-+++ ++. ...+.+-++ .+|
T Consensus 72 ~~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~-i~~~~~~----~~k-p~~~~~a~~-~~~ 144 (197)
T PHA02597 72 YLSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFSE-VLMCGHD----ESK-EKLFIKAKE-KYG 144 (197)
T ss_pred hccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcccE-EEEeccC----ccc-HHHHHHHHH-HhC
Confidence 3678999999999999888888888876665555666553322 14543 4443332 111 112222333 356
Q ss_pred CCCcEEEEcCCCcccccCccc--ccccc
Q 001926 810 MESAVVIIDDSVRVWPHNKLN--LIVVE 835 (995)
Q Consensus 810 rds~VVIVDDsp~vw~~qpdN--gI~Ik 835 (995)
.+.+|+|||+..-...-... +|..-
T Consensus 145 -~~~~v~vgDs~~di~aA~~a~~Gi~~i 171 (197)
T PHA02597 145 -DRVVCFVDDLAHNLDAAHEALSQLPVI 171 (197)
T ss_pred -CCcEEEeCCCHHHHHHHHHHHcCCcEE
Confidence 66799999998665433344 55443
No 140
>PLN02645 phosphoglycolate phosphatase
Probab=77.33 E-value=3.8 Score=45.56 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=39.0
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhc-cceEEEEcCC
Q 001926 681 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTMG 759 (995)
Q Consensus 681 KLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk-~YEIvIFTAG 759 (995)
-.++++|+||||++... .=||..++|+++.+ -..+++.|+.
T Consensus 28 ~~~~~~D~DGtl~~~~~--------------------------------------~~~ga~e~l~~lr~~g~~~~~~TN~ 69 (311)
T PLN02645 28 VETFIFDCDGVIWKGDK--------------------------------------LIEGVPETLDMLRSMGKKLVFVTNN 69 (311)
T ss_pred CCEEEEeCcCCeEeCCc--------------------------------------cCcCHHHHHHHHHHCCCEEEEEeCC
Confidence 45889999999997531 12788899998875 5889999987
Q ss_pred chHHHHHHHHHHc
Q 001926 760 NKLYATEMAKVLD 772 (995)
Q Consensus 760 tkeYAd~VLdiLD 772 (995)
...-...+++.|.
T Consensus 70 ~~~~~~~~~~~l~ 82 (311)
T PLN02645 70 STKSRAQYGKKFE 82 (311)
T ss_pred CCCCHHHHHHHHH
Confidence 7554455554443
No 141
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=76.84 E-value=0.84 Score=45.17 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=54.5
Q ss_pred EeecccHHHHHHHHhccceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-C
Q 001926 734 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 812 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s 812 (995)
+.++||+.++|+. ++|.|++.+.|...+++.+.-.. +|.. +++-++.+ ..+++ ...|.+-++ .+|.+ +
T Consensus 89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~~-~fd~-v~~~~~~~-~~KP~-p~~f~~~~~-~~~~~p~ 157 (175)
T TIGR01493 89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLPW-YFDR-AFSVDTVR-AYKPD-PVVYELVFD-TVGLPPD 157 (175)
T ss_pred CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCHH-HHhh-hccHhhcC-CCCCC-HHHHHHHHH-HHCCCHH
Confidence 5689999999993 78999999999999999876543 6765 66655432 23322 112444444 46776 8
Q ss_pred cEEEEcCCC
Q 001926 813 AVVIIDDSV 821 (995)
Q Consensus 813 ~VVIVDDsp 821 (995)
.+|+|+|+.
T Consensus 158 ~~l~vgD~~ 166 (175)
T TIGR01493 158 RVLMVAAHQ 166 (175)
T ss_pred HeEeEecCh
Confidence 899999995
No 142
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=76.69 E-value=3.9 Score=44.31 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=33.7
Q ss_pred EEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhcc-ceEEEEcCCch
Q 001926 683 CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYTMGNK 761 (995)
Q Consensus 683 TLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~-YEIvIFTAGtk 761 (995)
++++||||||++..... . ..-|+..+||+++.+. ..+++.|+...
T Consensus 3 ~i~~D~DGtl~~~~~~~------~----------------------------~~~~~a~~al~~l~~~G~~~~~~Tn~~~ 48 (257)
T TIGR01458 3 GVLLDISGVLYISDAKS------G----------------------------VAVPGSQEAVKRLRGASVKVRFVTNTTK 48 (257)
T ss_pred EEEEeCCCeEEeCCCcc------c----------------------------CcCCCHHHHHHHHHHCCCeEEEEECCCC
Confidence 68999999999874200 0 0257889999999865 88889997554
Q ss_pred H
Q 001926 762 L 762 (995)
Q Consensus 762 e 762 (995)
.
T Consensus 49 ~ 49 (257)
T TIGR01458 49 E 49 (257)
T ss_pred C
Confidence 4
No 143
>PLN02811 hydrolase
Probab=76.50 E-value=2.6 Score=43.92 Aligned_cols=86 Identities=10% Similarity=0.018 Sum_probs=53.5
Q ss_pred EeecccHHHHHHHHhc-cceEEEEcCCchHHHHH-HHHHHcCCCceeeceEEecC--CCCCCCCCCCCCCcccccccccC
Q 001926 734 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATE-MAKVLDPKGVLFAGRVISRG--DDGDPFDGDERVPKSKDLEGVLG 809 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~-VLdiLDP~g~lF~~RIySRd--dc~~~~dG~er~~yiKDLsrVLG 809 (995)
+.+.||+.+||+.|.+ -|.++|-|++.+.+... +.+...-. .+|.. +++.+ ++.. .+.. ...|.+-+. .+|
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~~-i~~~~~~~~~~-~KP~-p~~~~~a~~-~~~ 151 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMHH-VVTGDDPEVKQ-GKPA-PDIFLAAAR-RFE 151 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCCE-EEECChhhccC-CCCC-cHHHHHHHH-HhC
Confidence 5678999999999986 59999999999876653 33222211 25654 56655 4321 2221 112344444 243
Q ss_pred ---CC-CcEEEEcCCCccc
Q 001926 810 ---ME-SAVVIIDDSVRVW 824 (995)
Q Consensus 810 ---rd-s~VVIVDDsp~vw 824 (995)
.. +.+|+|+|+..-.
T Consensus 152 ~~~~~~~~~v~IgDs~~di 170 (220)
T PLN02811 152 DGPVDPGKVLVFEDAPSGV 170 (220)
T ss_pred CCCCCccceEEEeccHhhH
Confidence 55 7899999998443
No 144
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=76.28 E-value=4.1 Score=43.86 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=47.2
Q ss_pred cCCCeEEEEeCCCceeecccCC--------CCCC-chhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHh
Q 001926 678 SARKLCLVLDLDHTLLNSAKFH--------EVDP-VHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERAS 748 (995)
Q Consensus 678 s~kKLTLVLDLDETLVHSs~~~--------eldP-~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLS 748 (995)
..++..+||||||||+....+. .+++ ..++|+.. .. -..=|+..+|++.+.
T Consensus 69 ~~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~-----------------~~---~~aip~a~~l~~~~~ 128 (229)
T PF03767_consen 69 ADKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVAS-----------------GK---APAIPGALELYNYAR 128 (229)
T ss_dssp HTSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHC-----------------TG---GEEETTHHHHHHHHH
T ss_pred cCCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhc-----------------cc---CcccHHHHHHHHHHH
Confidence 4789999999999999654210 0001 01111110 00 134588999999998
Q ss_pred cc-ceEEEEcCCchHHHHHHHHHHcCCC
Q 001926 749 KL-FEMHLYTMGNKLYATEMAKVLDPKG 775 (995)
Q Consensus 749 k~-YEIvIFTAGtkeYAd~VLdiLDP~g 775 (995)
+. ++|++-|.-....-+.-++.|.-.|
T Consensus 129 ~~G~~V~~iT~R~~~~r~~T~~nL~~~G 156 (229)
T PF03767_consen 129 SRGVKVFFITGRPESQREATEKNLKKAG 156 (229)
T ss_dssp HTTEEEEEEEEEETTCHHHHHHHHHHHT
T ss_pred HCCCeEEEEecCCchhHHHHHHHHHHcC
Confidence 76 8999998866664444444444333
No 145
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=75.84 E-value=2.8 Score=41.55 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=52.6
Q ss_pred EeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-
Q 001926 734 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 811 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd- 811 (995)
+.+.||+.++|+++.+ .+.++|-|++. .+..+++.++-.. +|.. ++..++-. ..+.. ...+.+-++ .++.+
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~-~f~~-~~~~~~~~-~~kp~-p~~~~~~~~-~~~~~~ 158 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLID-YFDA-IVDPAEIK-KGKPD-PEIFLAAAE-GLGVSP 158 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHh-hCcE-EEehhhcC-CCCCC-hHHHHHHHH-HcCCCH
Confidence 4678999999999975 58999999864 3567777776553 6764 55443211 12221 112333344 35666
Q ss_pred CcEEEEcCCCc
Q 001926 812 SAVVIIDDSVR 822 (995)
Q Consensus 812 s~VVIVDDsp~ 822 (995)
+++|+|+|++.
T Consensus 159 ~~~v~vgD~~~ 169 (185)
T TIGR01990 159 SECIGIEDAQA 169 (185)
T ss_pred HHeEEEecCHH
Confidence 78999999963
No 146
>PLN02954 phosphoserine phosphatase
Probab=74.79 E-value=6.7 Score=40.49 Aligned_cols=50 Identities=20% Similarity=0.346 Sum_probs=40.8
Q ss_pred EeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCC-ceeeceEE
Q 001926 734 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKG-VLFAGRVI 783 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g-~lF~~RIy 783 (995)
..++||+.+||+.+.+. +.++|.|++.+.|++.+++.++-.. .+|..++.
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~ 134 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQIL 134 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEE
Confidence 56889999999999764 8999999999999999999876542 36765443
No 147
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=74.05 E-value=9 Score=39.43 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=38.9
Q ss_pred ccceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEcCCCc
Q 001926 749 KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVR 822 (995)
Q Consensus 749 k~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s~VVIVDDsp~ 822 (995)
+.++++|.|.....++..+++.+.-.. +|.. +. .+. ..++.+-..+|.+ +.+++|-|+..
T Consensus 63 ~Gi~v~I~T~~~~~~v~~~l~~lgl~~-~f~g--------~~-~k~----~~l~~~~~~~gl~~~ev~~VGDs~~ 123 (183)
T PRK09484 63 SGIEVAIITGRKSKLVEDRMTTLGITH-LYQG--------QS-NKL----IAFSDLLEKLAIAPEQVAYIGDDLI 123 (183)
T ss_pred CCCEEEEEeCCCcHHHHHHHHHcCCce-eecC--------CC-cHH----HHHHHHHHHhCCCHHHEEEECCCHH
Confidence 679999999999999999999886442 3321 11 011 1222332245666 78999988863
No 148
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=73.15 E-value=4.5 Score=52.50 Aligned_cols=83 Identities=12% Similarity=0.169 Sum_probs=59.4
Q ss_pred ecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-Cc
Q 001926 736 LRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SA 813 (995)
Q Consensus 736 LRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s~ 813 (995)
+.||+.+||++|.+ -|.++|.|++...+++.+++.++-...+|.. +++.+++. ..+.+ ...|.+-++ .+|.. +.
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~-iv~~~~~~-~~KP~-Pe~~~~a~~-~lgv~p~e 237 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDA-IVSADAFE-NLKPA-PDIFLAAAK-ILGVPTSE 237 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCE-EEECcccc-cCCCC-HHHHHHHHH-HcCcCccc
Confidence 58999999999975 5999999999999999999987654446775 66655443 22221 113444444 45665 78
Q ss_pred EEEEcCCCc
Q 001926 814 VVIIDDSVR 822 (995)
Q Consensus 814 VVIVDDsp~ 822 (995)
+|+|+|++.
T Consensus 238 ~v~IgDs~~ 246 (1057)
T PLN02919 238 CVVIEDALA 246 (1057)
T ss_pred EEEEcCCHH
Confidence 999999973
No 149
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=72.89 E-value=6 Score=43.13 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=18.5
Q ss_pred cccHHHHHHHHhc-cceEEEEcCCc
Q 001926 737 RPGIWTFLERASK-LFEMHLYTMGN 760 (995)
Q Consensus 737 RPgL~EFLeeLSk-~YEIvIFTAGt 760 (995)
-|+..++|+++.+ ...+++.|+..
T Consensus 20 ~~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 20 VPGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 4778889988885 47888888754
No 150
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=72.73 E-value=12 Score=39.66 Aligned_cols=108 Identities=22% Similarity=0.274 Sum_probs=65.2
Q ss_pred CeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhc-cceEEEEcC-
Q 001926 681 KLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYTM- 758 (995)
Q Consensus 681 KLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk-~YEIvIFTA- 758 (995)
.++|+||.||||+--..- .++. + . ...+.||+.+=|..+.+ -|-++|+|+
T Consensus 5 ~k~lflDRDGtin~d~~~-yv~~----~------~-----------------~~~~~~g~i~al~~l~~~gy~lVvvTNQ 56 (181)
T COG0241 5 QKALFLDRDGTINIDKGD-YVDS----L------D-----------------DFQFIPGVIPALLKLQRAGYKLVVVTNQ 56 (181)
T ss_pred CcEEEEcCCCceecCCCc-ccCc----H------H-----------------HhccCccHHHHHHHHHhCCCeEEEEECC
Confidence 678999999999954310 0110 0 0 12368999999999975 599999999
Q ss_pred ---CchH--------HHHHHHHHHcCCCceeeceEEecCCC---CCCCCCCCCCCccccccc---ccCCC-CcEEEEcCC
Q 001926 759 ---GNKL--------YATEMAKVLDPKGVLFAGRVISRGDD---GDPFDGDERVPKSKDLEG---VLGME-SAVVIIDDS 820 (995)
Q Consensus 759 ---Gtke--------YAd~VLdiLDP~g~lF~~RIySRddc---~~~~dG~er~~yiKDLsr---VLGrd-s~VVIVDDs 820 (995)
++.. +-+.|+..|--.|.-|...+|+.++. |.+.+ +..+=|.. -++.+ .+.++|=|+
T Consensus 57 sGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRK-----P~~gm~~~~~~~~~iD~~~s~~VGD~ 131 (181)
T COG0241 57 SGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRK-----PKPGMLLSALKEYNIDLSRSYVVGDR 131 (181)
T ss_pred CCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccC-----CChHHHHHHHHHhCCCccceEEecCc
Confidence 3333 33346666766776788777765421 22333 22111111 12345 678888888
Q ss_pred C
Q 001926 821 V 821 (995)
Q Consensus 821 p 821 (995)
.
T Consensus 132 ~ 132 (181)
T COG0241 132 L 132 (181)
T ss_pred H
Confidence 5
No 151
>PTZ00174 phosphomannomutase; Provisional
Probab=72.51 E-value=7.7 Score=41.57 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=14.4
Q ss_pred CCeEEEEeCCCceeecc
Q 001926 680 RKLCLVLDLDHTLLNSA 696 (995)
Q Consensus 680 kKLTLVLDLDETLVHSs 696 (995)
..+.+++||||||+++.
T Consensus 4 ~~klia~DlDGTLL~~~ 20 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPR 20 (247)
T ss_pred CCeEEEEECcCCCcCCC
Confidence 35679999999999875
No 152
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=72.47 E-value=12 Score=42.05 Aligned_cols=50 Identities=12% Similarity=0.029 Sum_probs=34.8
Q ss_pred cccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecC
Q 001926 737 RPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRG 786 (995)
Q Consensus 737 RPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRd 786 (995)
=|+.-+|++++.+ -+.|++-|.-....-+.=++.|--.|--.-.+++=|+
T Consensus 147 lp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~ 197 (275)
T TIGR01680 147 LPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKD 197 (275)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecC
Confidence 4789999999974 5899999998877666666666555621124566564
No 153
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=72.44 E-value=5.4 Score=43.58 Aligned_cols=60 Identities=18% Similarity=0.121 Sum_probs=41.2
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhc--cceEEEEc
Q 001926 680 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK--LFEMHLYT 757 (995)
Q Consensus 680 kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk--~YEIvIFT 757 (995)
.++.|++|+||||+.... +|.. ..+-|.+.+-|+.+.+ ...++|.|
T Consensus 13 ~~~li~~D~DGTLl~~~~----~p~~----------------------------~~i~~~~~~~L~~L~~~~g~~v~i~S 60 (266)
T PRK10187 13 ANYAWFFDLDGTLAEIKP----HPDQ----------------------------VVVPDNILQGLQLLATANDGALALIS 60 (266)
T ss_pred CCEEEEEecCCCCCCCCC----Cccc----------------------------ccCCHHHHHHHHHHHhCCCCcEEEEe
Confidence 368899999999997542 2211 0134788888999886 36788888
Q ss_pred CCchHHHHHHHHHH
Q 001926 758 MGNKLYATEMAKVL 771 (995)
Q Consensus 758 AGtkeYAd~VLdiL 771 (995)
--...-+..+++.+
T Consensus 61 GR~~~~~~~~~~~~ 74 (266)
T PRK10187 61 GRSMVELDALAKPY 74 (266)
T ss_pred CCCHHHHHHhcCcc
Confidence 77777666666544
No 154
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=70.92 E-value=7.1 Score=42.05 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=12.2
Q ss_pred EEEEeCCCceeecc
Q 001926 683 CLVLDLDHTLLNSA 696 (995)
Q Consensus 683 TLVLDLDETLVHSs 696 (995)
.+++||||||++..
T Consensus 3 ~~~~D~DGtl~~~~ 16 (249)
T TIGR01457 3 GYLIDLDGTMYKGK 16 (249)
T ss_pred EEEEeCCCceEcCC
Confidence 68999999999764
No 155
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=70.55 E-value=8.2 Score=40.34 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=44.3
Q ss_pred hcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhccc-e--E
Q 001926 677 FSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLF-E--M 753 (995)
Q Consensus 677 Ls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~Y-E--I 753 (995)
...+=..||+|+|+||+.-.. . .+-|.+.+.|+++.+.| + |
T Consensus 37 k~~Gik~li~DkDNTL~~~~~--------~----------------------------~i~~~~~~~~~~l~~~~~~~~v 80 (168)
T PF09419_consen 37 KKKGIKALIFDKDNTLTPPYE--------D----------------------------EIPPEYAEWLNELKKQFGKDRV 80 (168)
T ss_pred hhcCceEEEEcCCCCCCCCCc--------C----------------------------cCCHHHHHHHHHHHHHCCCCeE
Confidence 345667999999999985431 0 13577788888888766 3 9
Q ss_pred EEEcCC-------chHHHHHHHHHHc
Q 001926 754 HLYTMG-------NKLYATEMAKVLD 772 (995)
Q Consensus 754 vIFTAG-------tkeYAd~VLdiLD 772 (995)
+|++++ ...-|+.+-+.|.
T Consensus 81 ~IvSNsaGs~~d~~~~~a~~~~~~lg 106 (168)
T PF09419_consen 81 LIVSNSAGSSDDPDGERAEALEKALG 106 (168)
T ss_pred EEEECCCCcccCccHHHHHHHHHhhC
Confidence 999998 3666777888887
No 156
>PLN03017 trehalose-phosphatase
Probab=70.50 E-value=7.4 Score=45.23 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=45.8
Q ss_pred hhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhccceE
Q 001926 674 KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEM 753 (995)
Q Consensus 674 ~~LLs~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~YEI 753 (995)
......+++.|+||+||||+--.. +|. -...-|.+.+-|+++.+.+.+
T Consensus 104 ~~~~~~k~~llflD~DGTL~Piv~----~p~----------------------------~a~i~~~~~~aL~~La~~~~v 151 (366)
T PLN03017 104 MEASRGKQIVMFLDYDGTLSPIVD----DPD----------------------------KAFMSSKMRRTVKKLAKCFPT 151 (366)
T ss_pred HHHhcCCCeEEEEecCCcCcCCcC----Ccc----------------------------cccCCHHHHHHHHHHhcCCcE
Confidence 345677899999999999993221 111 012357788889999998999
Q ss_pred EEEcCCchHHHHHHHH
Q 001926 754 HLYTMGNKLYATEMAK 769 (995)
Q Consensus 754 vIFTAGtkeYAd~VLd 769 (995)
+|-|--...-+..+++
T Consensus 152 aIvSGR~~~~l~~~~~ 167 (366)
T PLN03017 152 AIVTGRCIDKVYNFVK 167 (366)
T ss_pred EEEeCCCHHHHHHhhc
Confidence 9998877777666643
No 157
>PLN02423 phosphomannomutase
Probab=69.09 E-value=9.1 Score=41.30 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=13.3
Q ss_pred CCeEEEEeCCCceeecc
Q 001926 680 RKLCLVLDLDHTLLNSA 696 (995)
Q Consensus 680 kKLTLVLDLDETLVHSs 696 (995)
-|+.+++||||||+...
T Consensus 6 ~~~i~~~D~DGTLl~~~ 22 (245)
T PLN02423 6 PGVIALFDVDGTLTAPR 22 (245)
T ss_pred cceEEEEeccCCCcCCC
Confidence 35566799999999764
No 158
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.90 E-value=2.6 Score=50.35 Aligned_cols=120 Identities=20% Similarity=0.189 Sum_probs=62.1
Q ss_pred hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhcc-ceEE
Q 001926 676 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMH 754 (995)
Q Consensus 676 LLs~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~-YEIv 754 (995)
+....|++||||||+||+--.... |-. .-+++.... --..-=-+++|.+.+.+. +=+.
T Consensus 217 ~~g~~kK~LVLDLDNTLWGGVIGe--dGv------------------~GI~Ls~~~-~G~~fk~fQ~~Ik~l~kqGVlLa 275 (574)
T COG3882 217 MSGKSKKALVLDLDNTLWGGVIGE--DGV------------------DGIRLSNSA-EGEAFKTFQNFIKGLKKQGVLLA 275 (574)
T ss_pred hhCcccceEEEecCCccccccccc--ccc------------------cceeecCCC-CchhHHHHHHHHHHHHhccEEEE
Confidence 346789999999999999765210 000 001111000 000001245666666654 6688
Q ss_pred EEcCCchHHHHHHHHHHcCCCceeeceEEecCCC----CCCCCCCCCCCcccccccccCCC-CcEEEEcCCCccccc
Q 001926 755 LYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDD----GDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPH 826 (995)
Q Consensus 755 IFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc----~~~~dG~er~~yiKDLsrVLGrd-s~VVIVDDsp~vw~~ 826 (995)
|++..+..-|.+|... -|+ -|+..++- ++|-+ ....++-+.+.|+-. ..+|+|||.|.....
T Consensus 276 v~SKN~~~da~evF~k-hp~------MiLkeedfa~~~iNW~~---K~eNirkIAkklNlg~dSmvFiDD~p~ErE~ 342 (574)
T COG3882 276 VCSKNTEKDAKEVFRK-HPD------MILKEEDFAVFQINWDP---KAENIRKIAKKLNLGLDSMVFIDDNPAEREL 342 (574)
T ss_pred EecCCchhhHHHHHhh-CCC------eEeeHhhhhhheecCCc---chhhHHHHHHHhCCCccceEEecCCHHHHHH
Confidence 9988888888887753 122 24433321 11211 001122222234444 568899999965543
No 159
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=67.02 E-value=2.6 Score=43.50 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=26.4
Q ss_pred EeecccHHHHHHHHhccceEEEEcCCchHH
Q 001926 734 TKLRPGIWTFLERASKLFEMHLYTMGNKLY 763 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~YEIvIFTAGtkeY 763 (995)
+..-||.++-++++-+.|+|||-|+++-.|
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamdhp 96 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMDHP 96 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccCCc
Confidence 667899999999999999999999995544
No 160
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=66.49 E-value=10 Score=40.39 Aligned_cols=15 Identities=53% Similarity=0.786 Sum_probs=12.9
Q ss_pred CeEEEEeCCCceeec
Q 001926 681 KLCLVLDLDHTLLNS 695 (995)
Q Consensus 681 KLTLVLDLDETLVHS 695 (995)
++.++.||||||+.+
T Consensus 1 ~~li~tDlDGTLl~~ 15 (249)
T TIGR01485 1 RLLLVSDLDNTLVDH 15 (249)
T ss_pred CeEEEEcCCCcCcCC
Confidence 468999999999974
No 161
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=66.35 E-value=8.5 Score=42.94 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=38.0
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhcc-ceEEEEc
Q 001926 679 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKL-FEMHLYT 757 (995)
Q Consensus 679 ~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~-YEIvIFT 757 (995)
.+.-+.++||||||++-.. .=||..+||+++.+. -.+++-|
T Consensus 6 ~~y~~~l~DlDGvl~~G~~--------------------------------------~ipga~e~l~~L~~~g~~~iflT 47 (269)
T COG0647 6 DKYDGFLFDLDGVLYRGNE--------------------------------------AIPGAAEALKRLKAAGKPVIFLT 47 (269)
T ss_pred hhcCEEEEcCcCceEeCCc--------------------------------------cCchHHHHHHHHHHcCCeEEEEe
Confidence 3455789999999998752 247888899988876 6788888
Q ss_pred CCchHHHHHHHH
Q 001926 758 MGNKLYATEMAK 769 (995)
Q Consensus 758 AGtkeYAd~VLd 769 (995)
++...-.+.+.+
T Consensus 48 Nn~~~s~~~~~~ 59 (269)
T COG0647 48 NNSTRSREVVAA 59 (269)
T ss_pred CCCCCCHHHHHH
Confidence 876544443333
No 162
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=65.55 E-value=23 Score=44.76 Aligned_cols=62 Identities=29% Similarity=0.385 Sum_probs=44.8
Q ss_pred HHHHhCCEEecccC------CCccEEEecCCC--CHHH--HHHHh--cCCcEecHHHHHHHHHhccCCCCCCCC
Q 001926 931 TAEQFGAVCTKHID------DQVTHVVANSLG--TDKV--NWALS--TGRFVVHPGWVEASALLYRRANEQDFA 992 (995)
Q Consensus 931 lAe~LGAtVs~dvd------~~VTHLVAss~g--TeKv--~~Alk--~GI~IVSPdWLedC~~~~kRvDEsdYl 992 (995)
.+..+|+.+...-. ..+||+|+.--+ +.+. ..|.+ ...+||.|.|+.+|+.....++|..|+
T Consensus 808 ~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt~~rkv~~~~wv~~s~~~~~~~~e~~~~ 881 (881)
T KOG0966|consen 808 KLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLTIKRKVVAPSWVDHSINENCLLPEEDFP 881 (881)
T ss_pred HHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhcccccccCHHHHHHhhcccccCccccCC
Confidence 46777999865543 468999997322 2222 22322 244999999999999999999999995
No 163
>PLN02887 hydrolase family protein
Probab=65.48 E-value=11 Score=46.15 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=41.7
Q ss_pred hcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhc-cceEEE
Q 001926 677 FSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHL 755 (995)
Q Consensus 677 Ls~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk-~YEIvI 755 (995)
+..+.+.+++||||||++... ++ -|...+-|+++.+ -+.++|
T Consensus 304 ~~~~iKLIa~DLDGTLLn~d~--~I-----------------------------------s~~t~eAI~kl~ekGi~~vI 346 (580)
T PLN02887 304 YKPKFSYIFCDMDGTLLNSKS--QI-----------------------------------SETNAKALKEALSRGVKVVI 346 (580)
T ss_pred hccCccEEEEeCCCCCCCCCC--cc-----------------------------------CHHHHHHHHHHHHCCCeEEE
Confidence 445566899999999997642 11 2333455666664 478888
Q ss_pred EcCCchHHHHHHHHHHcCC
Q 001926 756 YTMGNKLYATEMAKVLDPK 774 (995)
Q Consensus 756 FTAGtkeYAd~VLdiLDP~ 774 (995)
.|.-...-+..+++.|+..
T Consensus 347 ATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 347 ATGKARPAVIDILKMVDLA 365 (580)
T ss_pred EcCCCHHHHHHHHHHhCcc
Confidence 8887777777788877643
No 164
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=65.01 E-value=7.8 Score=41.38 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=22.6
Q ss_pred ccHHHHHHHHhcc-ceEEEEcCCc----hHHHHHHHHH
Q 001926 738 PGIWTFLERASKL-FEMHLYTMGN----KLYATEMAKV 770 (995)
Q Consensus 738 PgL~EFLeeLSk~-YEIvIFTAGt----keYAd~VLdi 770 (995)
|+..++|+.+.+. +.+++.|++. .+|++.+.++
T Consensus 17 ~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~ 54 (236)
T TIGR01460 17 PGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSL 54 (236)
T ss_pred cCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5777888888754 7788887544 5566666663
No 165
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=63.79 E-value=15 Score=41.76 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=23.5
Q ss_pred HHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCC
Q 001926 740 IWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPK 774 (995)
Q Consensus 740 L~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~ 774 (995)
..+-|+++.+. ..|++.|.-+..=...+.+.|.-.
T Consensus 23 a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 23 ARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 45567777654 778888777766666677777644
No 166
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=63.17 E-value=11 Score=38.13 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=41.4
Q ss_pred EeecccHHHHHHHHhc-cceEEEEcCCchHHHHHHHHHHcCCCceeeceEE
Q 001926 734 TKLRPGIWTFLERASK-LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 783 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk-~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIy 783 (995)
..++|++.++|+.+.+ -+.++|.|++...|+..+++.+.-+. +|..++.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~~~~l~ 135 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN-AIGTRLE 135 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc-eEecceE
Confidence 4589999999999876 58999999999999999999887664 6766554
No 167
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=62.97 E-value=5.9 Score=42.32 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=38.4
Q ss_pred CCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhccceEEEEcCC
Q 001926 680 RKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMG 759 (995)
Q Consensus 680 kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~YEIvIFTAG 759 (995)
+|..|+||+||||+-... +|. ..+.-|++.+.|+.|.+....+||=.+
T Consensus 2 ~~~~l~lD~DGTL~~~~~----~p~----------------------------~~~~~~~~~~~L~~L~~~~~~~v~ivS 49 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVP----DPD----------------------------AAVVSDRLLTILQKLAARPHNAIWIIS 49 (244)
T ss_pred CcEEEEEecCccccCCcC----CCc----------------------------ccCCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 678899999999995421 121 123468899999999988655433333
Q ss_pred chHHHHHHHHHHcCC
Q 001926 760 NKLYATEMAKVLDPK 774 (995)
Q Consensus 760 tkeYAd~VLdiLDP~ 774 (995)
.+.+. .+...+.+.
T Consensus 50 GR~~~-~~~~~~~~~ 63 (244)
T TIGR00685 50 GRKFL-EKWLGVKLP 63 (244)
T ss_pred CCChh-hccccCCCC
Confidence 33443 333444443
No 168
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=60.89 E-value=2.8 Score=45.73 Aligned_cols=20 Identities=15% Similarity=0.312 Sum_probs=16.2
Q ss_pred hcCCCeEEEEeCCCceeecc
Q 001926 677 FSARKLCLVLDLDHTLLNSA 696 (995)
Q Consensus 677 Ls~kKLTLVLDLDETLVHSs 696 (995)
+......+||||||||+.|.
T Consensus 20 ~~~~~k~vIFDlDGTLvDS~ 39 (260)
T PLN03243 20 LGCGWLGVVLEWEGVIVEDD 39 (260)
T ss_pred hcCCceEEEEeCCCceeCCc
Confidence 34555679999999999984
No 169
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=60.52 E-value=17 Score=39.20 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=35.6
Q ss_pred EeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHc
Q 001926 734 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLD 772 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLD 772 (995)
+++|||..+|.+++.+. -.++|-++|+..|..+++..|-
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhc
Confidence 78999999999999976 7899999999999999998664
No 170
>PLN02151 trehalose-phosphatase
Probab=59.78 E-value=18 Score=42.01 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=46.2
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhccceEE
Q 001926 675 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMH 754 (995)
Q Consensus 675 ~LLs~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~YEIv 754 (995)
.+...+++.|+||+||||+--.. +|. -+..-|.+.+-|+.|++.+.++
T Consensus 92 ~~~~~~~~ll~lDyDGTL~PIv~----~P~----------------------------~A~~~~~~~~aL~~La~~~~va 139 (354)
T PLN02151 92 HKSEGKQIVMFLDYDGTLSPIVD----DPD----------------------------RAFMSKKMRNTVRKLAKCFPTA 139 (354)
T ss_pred HhhcCCceEEEEecCccCCCCCC----Ccc----------------------------cccCCHHHHHHHHHHhcCCCEE
Confidence 34567889999999999993221 121 1235689999999999999999
Q ss_pred EEcCCchHHHHHHHH
Q 001926 755 LYTMGNKLYATEMAK 769 (995)
Q Consensus 755 IFTAGtkeYAd~VLd 769 (995)
|-|--...-.+.++.
T Consensus 140 IvSGR~~~~l~~~~~ 154 (354)
T PLN02151 140 IVSGRCREKVSSFVK 154 (354)
T ss_pred EEECCCHHHHHHHcC
Confidence 998777766665553
No 171
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=59.58 E-value=18 Score=45.21 Aligned_cols=59 Identities=19% Similarity=0.091 Sum_probs=41.6
Q ss_pred CCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhc-cceEEEEc
Q 001926 679 ARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK-LFEMHLYT 757 (995)
Q Consensus 679 ~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk-~YEIvIFT 757 (995)
.+++.+++||||||++.... +. +...+-|+.+.+ -+.++|.|
T Consensus 414 ~~~KLIfsDLDGTLLd~d~~-----------------------------------i~--~~t~eAL~~L~ekGI~~VIAT 456 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLTY-----------------------------------SY--STALDALRLLKDKELPLVFCS 456 (694)
T ss_pred ceeeEEEEECcCCCcCCCCc-----------------------------------cC--HHHHHHHHHHHHcCCeEEEEe
Confidence 45678999999999986420 00 123445666664 47888999
Q ss_pred CCchHHHHHHHHHHcCC
Q 001926 758 MGNKLYATEMAKVLDPK 774 (995)
Q Consensus 758 AGtkeYAd~VLdiLDP~ 774 (995)
.-....+..+++.|+..
T Consensus 457 GRs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 457 AKTMGEQDLYRNELGIK 473 (694)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 88888888888888643
No 172
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=55.43 E-value=24 Score=37.14 Aligned_cols=84 Identities=21% Similarity=0.316 Sum_probs=57.2
Q ss_pred EeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-
Q 001926 734 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME- 811 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd- 811 (995)
..+-||+.+.|+.+.+. |.+.|.|+.....++.+++.++-.. ||.. ++.-+++ ...+++ ......-+. .+|.+
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F~~-i~g~~~~-~~~KP~-P~~l~~~~~-~~~~~~ 162 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YFDV-IVGGDDV-PPPKPD-PEPLLLLLE-KLGLDP 162 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-ccce-EEcCCCC-CCCCcC-HHHHHHHHH-HhCCCh
Confidence 56899999999999865 8999999999999999999988776 7875 4442221 112211 001112222 23555
Q ss_pred CcEEEEcCCCc
Q 001926 812 SAVVIIDDSVR 822 (995)
Q Consensus 812 s~VVIVDDsp~ 822 (995)
+++|+|=|+..
T Consensus 163 ~~~l~VGDs~~ 173 (220)
T COG0546 163 EEALMVGDSLN 173 (220)
T ss_pred hheEEECCCHH
Confidence 58999999874
No 173
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=55.26 E-value=6.5 Score=40.14 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=12.6
Q ss_pred EEEEeCCCceeecc
Q 001926 683 CLVLDLDHTLLNSA 696 (995)
Q Consensus 683 TLVLDLDETLVHSs 696 (995)
.+++|||||||.|.
T Consensus 2 ~viFD~DGTLiDs~ 15 (197)
T TIGR01548 2 ALVLDMDGVMADVS 15 (197)
T ss_pred ceEEecCceEEech
Confidence 47999999999986
No 174
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=54.40 E-value=13 Score=47.45 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=44.8
Q ss_pred hhHHHHHHHhCCEEecccC------------CCccEEEecCCCCHHHHHHHhcCCcEecHHHHHHHHHhccCCC
Q 001926 926 HPLWQTAEQFGAVCTKHID------------DQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRAN 987 (995)
Q Consensus 926 ~~LwklAe~LGAtVs~dvd------------~~VTHLVAss~gTeKv~~Alk~GI~IVSPdWLedC~~~~kRvD 987 (995)
-.+|.-+...|+.-.-++. .-+-||++...++.-.++|-..++++|+++||.+|+-...+.-
T Consensus 1086 ~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d~~~~~svmk~ad~l~~pvvs~EWvIQtiI~~~~i~ 1159 (1176)
T KOG3548|consen 1086 IEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVDGTFRDSVMKYADTLGAPVVSSEWVIQTIILGKAIE 1159 (1176)
T ss_pred HHHHHHHHHhhchheecccccccccccccccceeEEEecCccHHHHHHHHHHhCCCccChhHhheeeeccccCC
Confidence 4577666666666544441 1245777777777777888899999999999999998766543
No 175
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=54.12 E-value=7.3 Score=38.97 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=26.4
Q ss_pred CCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhcCCcEec
Q 001926 922 NPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVH 972 (995)
Q Consensus 922 ~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~gTeKv~~Alk~GI~IVS 972 (995)
.|....+...++.+|.. -.++|.-.-...-++.|.+.|+++|-
T Consensus 142 KP~p~~~~~~~~~~~~~--------~~~~l~igDs~~di~aA~~aG~~~i~ 184 (188)
T PRK10725 142 KPAPDTFLRCAQLMGVQ--------PTQCVVFEDADFGIQAARAAGMDAVD 184 (188)
T ss_pred CCChHHHHHHHHHcCCC--------HHHeEEEeccHhhHHHHHHCCCEEEe
Confidence 45556677778888742 23344434344557778888887764
No 176
>PLN02580 trehalose-phosphatase
Probab=53.38 E-value=24 Score=41.42 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=47.2
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhccceEE
Q 001926 675 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMH 754 (995)
Q Consensus 675 ~LLs~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~YEIv 754 (995)
.....+++.|+||.||||.--.. +|. -+..-|.+.+-|+.+++.+.++
T Consensus 113 ~~~~~k~~~LfLDyDGTLaPIv~----~Pd----------------------------~A~~s~~~~~aL~~La~~~~VA 160 (384)
T PLN02580 113 NFAKGKKIALFLDYDGTLSPIVD----DPD----------------------------RALMSDAMRSAVKNVAKYFPTA 160 (384)
T ss_pred HHhhcCCeEEEEecCCccCCCCC----Ccc----------------------------cccCCHHHHHHHHHHhhCCCEE
Confidence 34567899999999999984321 221 1234689999999999999999
Q ss_pred EEcCCchHHHHHHHH
Q 001926 755 LYTMGNKLYATEMAK 769 (995)
Q Consensus 755 IFTAGtkeYAd~VLd 769 (995)
|-|--...-.+..+.
T Consensus 161 IVSGR~~~~L~~~l~ 175 (384)
T PLN02580 161 IISGRSRDKVYELVG 175 (384)
T ss_pred EEeCCCHHHHHHHhC
Confidence 999888777666554
No 177
>PHA02597 30.2 hypothetical protein; Provisional
Probab=53.12 E-value=7.8 Score=39.41 Aligned_cols=43 Identities=16% Similarity=0.047 Sum_probs=27.3
Q ss_pred hhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhc--CCcEecHHHHHH
Q 001926 926 HPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALST--GRFVVHPGWVEA 978 (995)
Q Consensus 926 ~~LwklAe~LGAtVs~dvd~~VTHLVAss~gTeKv~~Alk~--GI~IVSPdWLed 978 (995)
..+...++.+|. .++|.-.-...-+..|.+. |++.|+..|-..
T Consensus 134 ~~~~~a~~~~~~----------~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~ 178 (197)
T PHA02597 134 KLFIKAKEKYGD----------RVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER 178 (197)
T ss_pred HHHHHHHHHhCC----------CcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh
Confidence 456666777871 2233333333347788887 999999888754
No 178
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=53.07 E-value=15 Score=42.29 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=38.4
Q ss_pred eEEEeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHH-c
Q 001926 731 GMWTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVL-D 772 (995)
Q Consensus 731 ~~yVKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiL-D 772 (995)
.-||.+-|++.++|+.+.+. +.+.|-|++...|++.+++.+ +
T Consensus 180 ~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 180 EKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred HHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 46889999999999999865 899999999999999999997 6
No 179
>PRK11587 putative phosphatase; Provisional
Probab=51.31 E-value=7.9 Score=40.23 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=13.6
Q ss_pred eEEEEeCCCceeecc
Q 001926 682 LCLVLDLDHTLLNSA 696 (995)
Q Consensus 682 LTLVLDLDETLVHSs 696 (995)
..+++||||||+.+.
T Consensus 4 k~viFDlDGTL~Ds~ 18 (218)
T PRK11587 4 KGFLFDLDGTLVDSL 18 (218)
T ss_pred CEEEEcCCCCcCcCH
Confidence 579999999999985
No 180
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=50.46 E-value=29 Score=37.09 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=43.2
Q ss_pred EEeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCCCceeeceEE
Q 001926 733 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVI 783 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIy 783 (995)
+++++||..+.++.+... +.++|.|+|-..|+++|.+.|.-+. .+.+++.
T Consensus 75 ~~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~-~~an~l~ 125 (212)
T COG0560 75 FLRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY-VVANELE 125 (212)
T ss_pred cCcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch-heeeEEE
Confidence 388999999999999976 9999999999999999999998765 4555443
No 181
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=50.44 E-value=8.1 Score=38.85 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=12.5
Q ss_pred EEEEeCCCceeecc
Q 001926 683 CLVLDLDHTLLNSA 696 (995)
Q Consensus 683 TLVLDLDETLVHSs 696 (995)
.+++||||||+.+.
T Consensus 2 ~viFDlDGTL~ds~ 15 (184)
T TIGR01993 2 VWFFDLDNTLYPHS 15 (184)
T ss_pred eEEEeCCCCCCCCc
Confidence 58999999999885
No 182
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=48.59 E-value=9.6 Score=39.11 Aligned_cols=15 Identities=33% Similarity=0.693 Sum_probs=13.4
Q ss_pred eEEEEeCCCceeecc
Q 001926 682 LCLVLDLDHTLLNSA 696 (995)
Q Consensus 682 LTLVLDLDETLVHSs 696 (995)
..+++||||||+++.
T Consensus 3 ~~viFDlDGTL~ds~ 17 (221)
T TIGR02253 3 KAIFFDLDDTLIDTS 17 (221)
T ss_pred eEEEEeCCCCCcCCC
Confidence 478999999999986
No 183
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=48.16 E-value=9.9 Score=39.17 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=13.9
Q ss_pred CeEEEEeCCCceeecc
Q 001926 681 KLCLVLDLDHTLLNSA 696 (995)
Q Consensus 681 KLTLVLDLDETLVHSs 696 (995)
...+++|+||||+++.
T Consensus 3 ~~~viFD~DGTL~ds~ 18 (214)
T PRK13288 3 INTVLFDLDGTLINTN 18 (214)
T ss_pred ccEEEEeCCCcCccCH
Confidence 3578999999999986
No 184
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=48.03 E-value=38 Score=38.78 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=52.1
Q ss_pred CcchhHHHHHHHHHhhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhcCC
Q 001926 889 DDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGR 968 (995)
Q Consensus 889 ~~~DVR~ILkeiQrkILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~gTeKv~~Alk~GI 968 (995)
...+++.+|..+++.+-++-.++++|-+|.+........+.+++.+.|+.+.-+.+ ++....+++.+.
T Consensus 112 s~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~S------------g~~L~~~L~~~P 179 (310)
T COG1105 112 SEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTS------------GEALLAALEAKP 179 (310)
T ss_pred CHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECC------------hHHHHHHHccCC
Confidence 34567777777777777777899999999887555556788888899988876644 344555566566
Q ss_pred cEecH
Q 001926 969 FVVHP 973 (995)
Q Consensus 969 ~IVSP 973 (995)
++|.|
T Consensus 180 ~lIKP 184 (310)
T COG1105 180 WLIKP 184 (310)
T ss_pred cEEec
Confidence 66665
No 185
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=47.91 E-value=11 Score=38.89 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=13.3
Q ss_pred eEEEEeCCCceeecc
Q 001926 682 LCLVLDLDHTLLNSA 696 (995)
Q Consensus 682 LTLVLDLDETLVHSs 696 (995)
.++++||||||+.+.
T Consensus 2 k~iiFD~DGTL~ds~ 16 (220)
T TIGR03351 2 SLVVLDMAGTTVDED 16 (220)
T ss_pred cEEEEecCCCeeccC
Confidence 468999999999986
No 186
>PRK11590 hypothetical protein; Provisional
Probab=47.15 E-value=11 Score=39.36 Aligned_cols=39 Identities=10% Similarity=-0.107 Sum_probs=34.0
Q ss_pred EeecccHHHHH-HHHh-ccceEEEEcCCchHHHHHHHHHHc
Q 001926 734 TKLRPGIWTFL-ERAS-KLFEMHLYTMGNKLYATEMAKVLD 772 (995)
Q Consensus 734 VKLRPgL~EFL-eeLS-k~YEIvIFTAGtkeYAd~VLdiLD 772 (995)
+.++||+.+.| +.+. .-+.++|-|++...|+.++++.+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 46799999999 5676 579999999999999999998765
No 187
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=46.44 E-value=36 Score=38.08 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=47.8
Q ss_pred hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhccce--
Q 001926 675 KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFE-- 752 (995)
Q Consensus 675 ~LLs~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk~YE-- 752 (995)
..+..+|..++||.||||.+-..+ |.. ...=+++.+-|..|+..+.
T Consensus 12 ~~~~a~~~~~~lDyDGTl~~i~~~----p~~----------------------------a~~~~~l~~lL~~Las~~~~~ 59 (266)
T COG1877 12 PYLNARKRLLFLDYDGTLTEIVPH----PEA----------------------------AVPDDRLLSLLQDLASDPRNV 59 (266)
T ss_pred ccccccceEEEEeccccccccccC----ccc----------------------------cCCCHHHHHHHHHHHhcCCCe
Confidence 456789999999999999988642 211 1135778899999999998
Q ss_pred EEEEcCCchHHHHHHHH
Q 001926 753 MHLYTMGNKLYATEMAK 769 (995)
Q Consensus 753 IvIFTAGtkeYAd~VLd 769 (995)
++|.|.-...-.+..+.
T Consensus 60 v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 60 VAIISGRSLAELERLFG 76 (266)
T ss_pred EEEEeCCCHHHHHHhcC
Confidence 88888877777666655
No 188
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=46.23 E-value=18 Score=38.49 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=50.4
Q ss_pred EeecccHHHHHHHHhccceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-C
Q 001926 734 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-S 812 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s 812 (995)
+..-||+.++|+.|.+.|.++|.|++... ++.++-. .||.. +++-++.. ..++. ...+.+-++ .+|.+ +
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~-~~fd~-i~~~~~~~-~~KP~-p~~~~~a~~-~~~~~~~ 181 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLG-DYFEF-VLRAGPHG-RSKPF-SDMYHLAAE-KLNVPIG 181 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcH-Hhhce-eEecccCC-cCCCc-HHHHHHHHH-HcCCChh
Confidence 45669999999999988999999998875 2333222 36654 55433321 12221 112333333 35666 7
Q ss_pred cEEEEcCCC--ccccc
Q 001926 813 AVVIIDDSV--RVWPH 826 (995)
Q Consensus 813 ~VVIVDDsp--~vw~~ 826 (995)
.+|+|.|++ ++-..
T Consensus 182 ~~~~VGD~~~~Di~~A 197 (238)
T PRK10748 182 EILHVGDDLTTDVAGA 197 (238)
T ss_pred HEEEEcCCcHHHHHHH
Confidence 899998874 45443
No 189
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=46.12 E-value=12 Score=38.12 Aligned_cols=14 Identities=29% Similarity=0.244 Sum_probs=12.7
Q ss_pred EEEEeCCCceeecc
Q 001926 683 CLVLDLDHTLLNSA 696 (995)
Q Consensus 683 TLVLDLDETLVHSs 696 (995)
.+++||||||+.+.
T Consensus 2 ~viFDlDGTL~d~~ 15 (203)
T TIGR02252 2 LITFDAVGTLLALK 15 (203)
T ss_pred eEEEecCCceeeeC
Confidence 68999999999985
No 190
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=46.08 E-value=17 Score=40.06 Aligned_cols=41 Identities=22% Similarity=0.449 Sum_probs=34.9
Q ss_pred EeecccHHHHHHHHhcc--ceEEEEcCCchHHHHHHHHHHcCC
Q 001926 734 TKLRPGIWTFLERASKL--FEMHLYTMGNKLYATEMAKVLDPK 774 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~--YEIvIFTAGtkeYAd~VLdiLDP~ 774 (995)
+-+-||+-+.++.+++. ||++|-+.+..-+.+.+++..+-.
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~ 125 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIH 125 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHH
Confidence 45679999988888764 899999999999999999987543
No 191
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=45.79 E-value=10 Score=41.35 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=14.0
Q ss_pred CeEEEEeCCCceeecc
Q 001926 681 KLCLVLDLDHTLLNSA 696 (995)
Q Consensus 681 KLTLVLDLDETLVHSs 696 (995)
.+.+++||||||+++.
T Consensus 13 ~k~viFDlDGTL~Ds~ 28 (272)
T PRK13223 13 PRLVMFDLDGTLVDSV 28 (272)
T ss_pred CCEEEEcCCCccccCH
Confidence 3489999999999985
No 192
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=43.86 E-value=11 Score=37.31 Aligned_cols=15 Identities=20% Similarity=0.596 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 001926 682 LCLVLDLDHTLLNSA 696 (995)
Q Consensus 682 LTLVLDLDETLVHSs 696 (995)
..+++||||||+.+.
T Consensus 2 ~~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 2 KAVIFDMDGVIVDTA 16 (185)
T ss_pred CeEEEcCCCcccCCh
Confidence 468999999999985
No 193
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=43.30 E-value=12 Score=39.55 Aligned_cols=15 Identities=53% Similarity=0.738 Sum_probs=13.6
Q ss_pred eEEEEeCCCceeecc
Q 001926 682 LCLVLDLDHTLLNSA 696 (995)
Q Consensus 682 LTLVLDLDETLVHSs 696 (995)
..+|+||||||+.+.
T Consensus 13 k~viFD~DGTL~Ds~ 27 (229)
T PRK13226 13 RAVLFDLDGTLLDSA 27 (229)
T ss_pred CEEEEcCcCccccCH
Confidence 479999999999986
No 194
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=42.52 E-value=10 Score=36.73 Aligned_cols=14 Identities=36% Similarity=0.755 Sum_probs=12.4
Q ss_pred EEEEeCCCceeecc
Q 001926 683 CLVLDLDHTLLNSA 696 (995)
Q Consensus 683 TLVLDLDETLVHSs 696 (995)
++++|+||||+.+.
T Consensus 1 ~iifD~DGTL~d~~ 14 (154)
T TIGR01549 1 AILFDIDGTLVDSS 14 (154)
T ss_pred CeEecCCCcccccH
Confidence 47999999999985
No 195
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=42.43 E-value=10 Score=37.59 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=12.4
Q ss_pred EEEEeCCCceeecc
Q 001926 683 CLVLDLDHTLLNSA 696 (995)
Q Consensus 683 TLVLDLDETLVHSs 696 (995)
.+|+|+||||+.+.
T Consensus 1 ~iiFD~DGTL~ds~ 14 (185)
T TIGR01990 1 AVIFDLDGVITDTA 14 (185)
T ss_pred CeEEcCCCccccCh
Confidence 37999999999986
No 196
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=42.39 E-value=14 Score=39.77 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=13.5
Q ss_pred eEEEEeCCCceeecc
Q 001926 682 LCLVLDLDHTLLNSA 696 (995)
Q Consensus 682 LTLVLDLDETLVHSs 696 (995)
.++++||||||+.+.
T Consensus 5 k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 5 QAVIFDWAGTTVDFG 19 (267)
T ss_pred EEEEEcCCCCeecCC
Confidence 589999999999984
No 197
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=42.14 E-value=13 Score=35.53 Aligned_cols=13 Identities=38% Similarity=0.810 Sum_probs=11.8
Q ss_pred EEEeCCCceeecc
Q 001926 684 LVLDLDHTLLNSA 696 (995)
Q Consensus 684 LVLDLDETLVHSs 696 (995)
++|||||||+++.
T Consensus 1 iifD~dgtL~d~~ 13 (176)
T PF13419_consen 1 IIFDLDGTLVDTD 13 (176)
T ss_dssp EEEESBTTTEEHH
T ss_pred cEEECCCCcEeCH
Confidence 6899999999885
No 198
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=41.35 E-value=16 Score=37.64 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=41.9
Q ss_pred EeecccHHHHHHHHhcc-ceEEEEcCCchH-H---HHHHHHHHcCC-CceeeceE-EecCCCCCCCCCCCCCCccccccc
Q 001926 734 TKLRPGIWTFLERASKL-FEMHLYTMGNKL-Y---ATEMAKVLDPK-GVLFAGRV-ISRGDDGDPFDGDERVPKSKDLEG 806 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~-YEIvIFTAGtke-Y---Ad~VLdiLDP~-g~lF~~RI-ySRddc~~~~dG~er~~yiKDLsr 806 (995)
...=||+.+.|++|.+. |++++.|+.... | +..=.+.|+-. +.++.+++ ++.+ |.+
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~---------------K~~-- 134 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGD---------------KTL-- 134 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESS---------------GGG--
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecC---------------CCe--
Confidence 66779999999999988 477777766554 2 33334455532 11232233 3211 322
Q ss_pred ccCCCCcEEEEcCCCcccccCcccccc
Q 001926 807 VLGMESAVVIIDDSVRVWPHNKLNLIV 833 (995)
Q Consensus 807 VLGrds~VVIVDDsp~vw~~qpdNgI~ 833 (995)
++.| |+|||++.....-...+++
T Consensus 135 -v~~D---vlIDD~~~n~~~~~~~g~~ 157 (191)
T PF06941_consen 135 -VGGD---VLIDDRPHNLEQFANAGIP 157 (191)
T ss_dssp -C--S---EEEESSSHHHSS-SSESSE
T ss_pred -Eecc---EEecCChHHHHhccCCCce
Confidence 2333 7899999776544344533
No 199
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=41.35 E-value=13 Score=39.85 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=13.5
Q ss_pred eEEEEeCCCceeecc
Q 001926 682 LCLVLDLDHTLLNSA 696 (995)
Q Consensus 682 LTLVLDLDETLVHSs 696 (995)
..+++||||||+.+.
T Consensus 23 k~viFDlDGTLiDs~ 37 (248)
T PLN02770 23 EAVLFDVDGTLCDSD 37 (248)
T ss_pred CEEEEcCCCccCcCH
Confidence 479999999999986
No 200
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=40.85 E-value=11 Score=38.69 Aligned_cols=13 Identities=46% Similarity=0.695 Sum_probs=11.8
Q ss_pred EEEeCCCceeecc
Q 001926 684 LVLDLDHTLLNSA 696 (995)
Q Consensus 684 LVLDLDETLVHSs 696 (995)
+|+||||||+.+.
T Consensus 1 iiFDlDGTL~Ds~ 13 (205)
T TIGR01454 1 VVFDLDGVLVDSF 13 (205)
T ss_pred CeecCcCccccCH
Confidence 5899999999986
No 201
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=40.00 E-value=18 Score=38.49 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 001926 682 LCLVLDLDHTLLNSA 696 (995)
Q Consensus 682 LTLVLDLDETLVHSs 696 (995)
..+++||||||+.+.
T Consensus 3 k~viFD~DGTLiDs~ 17 (253)
T TIGR01422 3 EAVIFDWAGTTVDFG 17 (253)
T ss_pred eEEEEeCCCCeecCC
Confidence 478999999999984
No 202
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=39.71 E-value=14 Score=39.23 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=13.4
Q ss_pred eEEEEeCCCceeecc
Q 001926 682 LCLVLDLDHTLLNSA 696 (995)
Q Consensus 682 LTLVLDLDETLVHSs 696 (995)
..+++||||||+.+.
T Consensus 11 k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 11 SALTFDLDDTLYDNR 25 (238)
T ss_pred eeEEEcCcccccCCh
Confidence 479999999999985
No 203
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=39.63 E-value=53 Score=39.91 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=36.5
Q ss_pred EeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCC
Q 001926 734 TKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPK 774 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~ 774 (995)
-.+||++.++|+++.+. ++++|.|...+.+|+.+++.+.-+
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc
Confidence 34799999999999875 999999999999999999988653
No 204
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=39.35 E-value=14 Score=36.22 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=12.3
Q ss_pred EEEEeCCCceeecc
Q 001926 683 CLVLDLDHTLLNSA 696 (995)
Q Consensus 683 TLVLDLDETLVHSs 696 (995)
.+++||||||+.+.
T Consensus 1 ~vlFDlDgtLv~~~ 14 (183)
T TIGR01509 1 AILFDLDGVLVDTS 14 (183)
T ss_pred CeeeccCCceechH
Confidence 37999999999985
No 205
>PRK11590 hypothetical protein; Provisional
Probab=39.19 E-value=40 Score=35.23 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=14.1
Q ss_pred CCeEEEEeCCCceeecc
Q 001926 680 RKLCLVLDLDHTLLNSA 696 (995)
Q Consensus 680 kKLTLVLDLDETLVHSs 696 (995)
.+..+++||||||++..
T Consensus 5 ~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD 21 (211)
T ss_pred cceEEEEecCCCCcccc
Confidence 56689999999999554
No 206
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=39.06 E-value=57 Score=32.75 Aligned_cols=43 Identities=26% Similarity=0.284 Sum_probs=38.6
Q ss_pred EEEeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHHcCC
Q 001926 732 MWTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVLDPK 774 (995)
Q Consensus 732 ~yVKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiLDP~ 774 (995)
..-.+||++.++|++|.+. +.++|.|......|..+++.+.-.
T Consensus 124 ~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~ 167 (215)
T PF00702_consen 124 LRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIF 167 (215)
T ss_dssp EEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSC
T ss_pred ecCcchhhhhhhhhhhhccCcceeeeeccccccccccccccccc
Confidence 3457899999999999987 899999999999999999998763
No 207
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=38.75 E-value=15 Score=37.23 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=12.6
Q ss_pred EEEEeCCCceeecc
Q 001926 683 CLVLDLDHTLLNSA 696 (995)
Q Consensus 683 TLVLDLDETLVHSs 696 (995)
.+++|||||||++.
T Consensus 3 ~viFD~dgTLiD~~ 16 (198)
T TIGR01428 3 ALVFDVYGTLFDVH 16 (198)
T ss_pred EEEEeCCCcCccHH
Confidence 68999999999875
No 208
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=38.51 E-value=18 Score=38.06 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=15.0
Q ss_pred CCeEEEEeCCCceeeccc
Q 001926 680 RKLCLVLDLDHTLLNSAK 697 (995)
Q Consensus 680 kKLTLVLDLDETLVHSs~ 697 (995)
...++++||||||+.+..
T Consensus 3 ~~~~iiFDlDGTL~Ds~~ 20 (220)
T COG0546 3 MIKAILFDLDGTLVDSAE 20 (220)
T ss_pred CCCEEEEeCCCccccChH
Confidence 346899999999999863
No 209
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=38.00 E-value=13 Score=37.95 Aligned_cols=13 Identities=54% Similarity=0.838 Sum_probs=11.5
Q ss_pred EEEeCCCceeecc
Q 001926 684 LVLDLDHTLLNSA 696 (995)
Q Consensus 684 LVLDLDETLVHSs 696 (995)
+|+||||||+.+.
T Consensus 1 viFD~DGTL~Ds~ 13 (213)
T TIGR01449 1 VLFDLDGTLVDSA 13 (213)
T ss_pred CeecCCCccccCH
Confidence 5899999999875
No 210
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=37.76 E-value=15 Score=40.44 Aligned_cols=16 Identities=31% Similarity=0.546 Sum_probs=14.1
Q ss_pred CeEEEEeCCCceeecc
Q 001926 681 KLCLVLDLDHTLLNSA 696 (995)
Q Consensus 681 KLTLVLDLDETLVHSs 696 (995)
-..+++||||||++|.
T Consensus 62 ~k~vIFDlDGTLiDS~ 77 (273)
T PRK13225 62 LQAIIFDFDGTLVDSL 77 (273)
T ss_pred cCEEEECCcCccccCH
Confidence 4579999999999996
No 211
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=37.70 E-value=16 Score=37.24 Aligned_cols=93 Identities=12% Similarity=-0.034 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhccccCC---CCcchhHHHHHHHHHh-hccCceeEeeecccCCCCCCCChhHHHHHHHh-CCEEecccCC
Q 001926 871 SLGVIERLHKIFFSHQS---LDDVDVRNILAAEQRK-ILAGCRIVFSRVFPVGEANPHLHPLWQTAEQF-GAVCTKHIDD 945 (995)
Q Consensus 871 LL~fLe~IHq~FF~~~~---L~~~DVR~ILkeiQrk-ILsGCvIvFSG~~P~~~~~pe~~~LwklAe~L-GAtVs~dvd~ 945 (995)
+..+|+.++.. +.-.- -....++.+|+.+.-. .|. ++++ ++-. +..+|....+...++.+ |..
T Consensus 102 ~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd-~i~~-~~~~--~~~KP~~~~~~~~~~~~~~~~------- 169 (224)
T TIGR02254 102 AFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFD-DIFV-SEDA--GIQKPDKEIFNYALERMPKFS------- 169 (224)
T ss_pred HHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcC-EEEE-cCcc--CCCCCCHHHHHHHHHHhcCCC-------
Confidence 45566666665 44221 1233444555443322 333 2222 2211 12245445566667777 533
Q ss_pred CccEEEecCCCC-HHHHHHHhcCCcEecHHHH
Q 001926 946 QVTHVVANSLGT-DKVNWALSTGRFVVHPGWV 976 (995)
Q Consensus 946 ~VTHLVAss~gT-eKv~~Alk~GI~IVSPdWL 976 (995)
..+.|.-.-.. .-+..|++.|+..|...|-
T Consensus 170 -~~~~v~igD~~~~di~~A~~~G~~~i~~~~~ 200 (224)
T TIGR02254 170 -KEEVLMIGDSLTADIKGGQNAGLDTCWMNPD 200 (224)
T ss_pred -chheEEECCCcHHHHHHHHHCCCcEEEECCC
Confidence 12344433333 4677788889877766663
No 212
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=37.36 E-value=16 Score=36.27 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=11.8
Q ss_pred EEEeCCCceeecc
Q 001926 684 LVLDLDHTLLNSA 696 (995)
Q Consensus 684 LVLDLDETLVHSs 696 (995)
|++||||||+.+.
T Consensus 2 viFD~DGTL~D~~ 14 (175)
T TIGR01493 2 MVFDVYGTLVDVH 14 (175)
T ss_pred eEEecCCcCcccH
Confidence 7999999999885
No 213
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=37.08 E-value=20 Score=36.71 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=13.0
Q ss_pred eEEEEeCCCceeecc
Q 001926 682 LCLVLDLDHTLLNSA 696 (995)
Q Consensus 682 LTLVLDLDETLVHSs 696 (995)
.++|+||||||+++.
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 379999999999973
No 214
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=36.94 E-value=30 Score=34.39 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=36.4
Q ss_pred ecccHH----HHHHHH-hccceEEEEcCCchHHHHHHHHHHcCCC-ceeeceE
Q 001926 736 LRPGIW----TFLERA-SKLFEMHLYTMGNKLYATEMAKVLDPKG-VLFAGRV 782 (995)
Q Consensus 736 LRPgL~----EFLeeL-Sk~YEIvIFTAGtkeYAd~VLdiLDP~g-~lF~~RI 782 (995)
++|++. +||+++ ...++++|-|++...|++.+++.+.-.. .++..++
T Consensus 86 ~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~ 138 (192)
T PF12710_consen 86 LFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL 138 (192)
T ss_dssp HCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE
T ss_pred cCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee
Confidence 457767 999998 4679999999999999999999776443 2344444
No 215
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=36.42 E-value=20 Score=37.32 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=14.4
Q ss_pred CCeEEEEeCCCceeecc
Q 001926 680 RKLCLVLDLDHTLLNSA 696 (995)
Q Consensus 680 kKLTLVLDLDETLVHSs 696 (995)
.-..+++|+||||+++.
T Consensus 6 ~~k~iiFD~DGTL~d~~ 22 (222)
T PRK10826 6 QILAAIFDMDGLLIDSE 22 (222)
T ss_pred cCcEEEEcCCCCCCcCH
Confidence 34688999999999985
No 216
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=36.37 E-value=18 Score=37.11 Aligned_cols=15 Identities=47% Similarity=0.651 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeecc
Q 001926 682 LCLVLDLDHTLLNSA 696 (995)
Q Consensus 682 LTLVLDLDETLVHSs 696 (995)
..+++|+||||+++.
T Consensus 7 ~~iiFD~DGTL~d~~ 21 (226)
T PRK13222 7 RAVAFDLDGTLVDSA 21 (226)
T ss_pred cEEEEcCCcccccCH
Confidence 479999999999885
No 217
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=36.05 E-value=57 Score=40.80 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=43.5
Q ss_pred cCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEeccceEEEeecccHHHHHHHHhc--cceEEE
Q 001926 678 SARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASK--LFEMHL 755 (995)
Q Consensus 678 s~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~~~~~yVKLRPgL~EFLeeLSk--~YEIvI 755 (995)
..++..|++|+||||+.... +|. ....-|.+.+.|+.|.+ ...|+|
T Consensus 489 ~~~~rLi~~D~DGTL~~~~~----~~~----------------------------~~~~~~~~~~~L~~L~~d~g~~V~i 536 (726)
T PRK14501 489 AASRRLLLLDYDGTLVPFAP----DPE----------------------------LAVPDKELRDLLRRLAADPNTDVAI 536 (726)
T ss_pred hccceEEEEecCccccCCCC----Ccc----------------------------cCCCCHHHHHHHHHHHcCCCCeEEE
Confidence 46678999999999996431 111 01135678889999987 678999
Q ss_pred EcCCchHHHHHHHHH
Q 001926 756 YTMGNKLYATEMAKV 770 (995)
Q Consensus 756 FTAGtkeYAd~VLdi 770 (995)
.|--.....++.+..
T Consensus 537 vSGR~~~~l~~~~~~ 551 (726)
T PRK14501 537 ISGRDRDTLERWFGD 551 (726)
T ss_pred EeCCCHHHHHHHhCC
Confidence 998887777666543
No 218
>PLN02382 probable sucrose-phosphatase
Probab=35.48 E-value=19 Score=42.21 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=17.8
Q ss_pred hhhcCCCeEEEEeCCCceeec
Q 001926 675 KMFSARKLCLVLDLDHTLLNS 695 (995)
Q Consensus 675 ~LLs~kKLTLVLDLDETLVHS 695 (995)
++-...++.||.||||||+..
T Consensus 3 ~~~~~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 3 RLSGSPRLMIVSDLDHTMVDH 23 (413)
T ss_pred cccCCCCEEEEEcCCCcCcCC
Confidence 455678999999999999965
No 219
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=35.21 E-value=21 Score=35.82 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=13.0
Q ss_pred eEEEEeCCCceeecc
Q 001926 682 LCLVLDLDHTLLNSA 696 (995)
Q Consensus 682 LTLVLDLDETLVHSs 696 (995)
.++|+|+||||+.+.
T Consensus 5 k~viFD~DGTLid~~ 19 (201)
T TIGR01491 5 KLIIFDLDGTLTDVM 19 (201)
T ss_pred eEEEEeCCCCCcCCc
Confidence 479999999999864
No 220
>PRK09449 dUMP phosphatase; Provisional
Probab=34.82 E-value=18 Score=37.35 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=25.0
Q ss_pred CCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHHHHHHhcCCcEecHH
Q 001926 922 NPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPG 974 (995)
Q Consensus 922 ~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~gTeKv~~Alk~GI~IVSPd 974 (995)
+|....+...++.+|.. +.-..++....-..-+..|++.|+..|...
T Consensus 150 KP~p~~~~~~~~~~~~~------~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~ 196 (224)
T PRK09449 150 KPDVAIFDYALEQMGNP------DRSRVLMVGDNLHSDILGGINAGIDTCWLN 196 (224)
T ss_pred CCCHHHHHHHHHHcCCC------CcccEEEEcCCcHHHHHHHHHCCCcEEEEC
Confidence 45555566677777631 111233333222234677888888766544
No 221
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=34.63 E-value=21 Score=37.83 Aligned_cols=16 Identities=44% Similarity=0.526 Sum_probs=13.4
Q ss_pred CeEEEEeCCCceeecc
Q 001926 681 KLCLVLDLDHTLLNSA 696 (995)
Q Consensus 681 KLTLVLDLDETLVHSs 696 (995)
-..+|+||||||+.+.
T Consensus 10 ~k~vIFDlDGTL~d~~ 25 (224)
T PRK14988 10 VDTVLLDMDGTLLDLA 25 (224)
T ss_pred CCEEEEcCCCCccchh
Confidence 3579999999999963
No 222
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=33.67 E-value=24 Score=38.94 Aligned_cols=17 Identities=24% Similarity=0.342 Sum_probs=14.5
Q ss_pred CCeEEEEeCCCceeecc
Q 001926 680 RKLCLVLDLDHTLLNSA 696 (995)
Q Consensus 680 kKLTLVLDLDETLVHSs 696 (995)
+-..+|+||||||+.+.
T Consensus 39 ~~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 39 LPEALLFDCDGVLVETE 55 (286)
T ss_pred CCcEEEEeCceeEEccc
Confidence 33589999999999986
No 223
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=33.13 E-value=58 Score=34.54 Aligned_cols=37 Identities=11% Similarity=-0.095 Sum_probs=32.9
Q ss_pred EeecccHHHHHH-HHh-ccceEEEEcCCchHHHHHHHHH
Q 001926 734 TKLRPGIWTFLE-RAS-KLFEMHLYTMGNKLYATEMAKV 770 (995)
Q Consensus 734 VKLRPgL~EFLe-eLS-k~YEIvIFTAGtkeYAd~VLdi 770 (995)
+.++|++.+.|+ .+. +-+.|+|-|++...|++++++.
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHh
Confidence 367999999996 777 5899999999999999999976
No 224
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=30.50 E-value=1.3e+02 Score=33.66 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=23.2
Q ss_pred HHHHh-ccceEEEEcCCchHHHHHHHHHHcCCCc
Q 001926 744 LERAS-KLFEMHLYTMGNKLYATEMAKVLDPKGV 776 (995)
Q Consensus 744 LeeLS-k~YEIvIFTAGtkeYAd~VLdiLDP~g~ 776 (995)
|.++. .-|+|+.+|.-++.=-....+-|+-++.
T Consensus 32 ~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~~ 65 (274)
T COG3769 32 LLELKDAGVPVILCSSKTRAEMLYLQKSLGVQGL 65 (274)
T ss_pred HHHHHHcCCeEEEeccchHHHHHHHHHhcCCCCC
Confidence 34444 4599999988777666667778887764
No 225
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=30.31 E-value=61 Score=35.19 Aligned_cols=33 Identities=12% Similarity=-0.018 Sum_probs=19.3
Q ss_pred ccHHHHHH-HHhccceEEEEcCCchHHHHHHHHH
Q 001926 738 PGIWTFLE-RASKLFEMHLYTMGNKLYATEMAKV 770 (995)
Q Consensus 738 PgL~EFLe-eLSk~YEIvIFTAGtkeYAd~VLdi 770 (995)
.-+.+||+ ......-+++-|--+..=+..++..
T Consensus 22 ~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~ 55 (247)
T PF05116_consen 22 ARLEELLEQQARPEILFVYVTGRSLESVLRLLRE 55 (247)
T ss_dssp HHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHh
Confidence 34556677 4445566777777777766677664
No 226
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=30.24 E-value=26 Score=36.19 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.7
Q ss_pred CeEEEEeCCCceeecc
Q 001926 681 KLCLVLDLDHTLLNSA 696 (995)
Q Consensus 681 KLTLVLDLDETLVHSs 696 (995)
-..+|+|+||||+.+.
T Consensus 4 ~~~viFD~DGTL~d~~ 19 (221)
T PRK10563 4 IEAVFFDCDGTLVDSE 19 (221)
T ss_pred CCEEEECCCCCCCCCh
Confidence 3578999999999875
No 227
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=30.13 E-value=2.3e+02 Score=29.49 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=39.0
Q ss_pred ccceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEcCCC
Q 001926 749 KLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSV 821 (995)
Q Consensus 749 k~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s~VVIVDDsp 821 (995)
+.+.+.|.|.....++..+++.+.-. .+|.. + ... . ..++.+...++-. +.+++|.|+.
T Consensus 49 ~Gi~laIiT~k~~~~~~~~l~~lgi~-~~f~~-~--kpk------p----~~~~~~~~~l~~~~~ev~~iGD~~ 108 (169)
T TIGR02726 49 CGIDVAIITSKKSGAVRHRAEELKIK-RFHEG-I--KKK------T----EPYAQMLEEMNISDAEVCYVGDDL 108 (169)
T ss_pred CCCEEEEEECCCcHHHHHHHHHCCCc-EEEec-C--CCC------H----HHHHHHHHHcCcCHHHEEEECCCH
Confidence 46899999999999999999999755 34542 1 110 0 0122222235655 7899999986
No 228
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=29.19 E-value=1.1e+02 Score=36.64 Aligned_cols=126 Identities=21% Similarity=0.240 Sum_probs=64.1
Q ss_pred CCCCCcccCcchhhcCCchhhhhHhhHHHHhhhHHHh-hhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccc
Q 001926 638 AHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQK-KMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQD 716 (995)
Q Consensus 638 ~~p~~~~~~f~~L~~g~~~~q~~~i~ke~akrL~~q~-~LLs~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D 716 (995)
.-.|+++..|++.+..-...+ ..+.+...- .-+...+..+|||||.|..-.....+..- ..-.+. .+
T Consensus 102 Las~~t~sR~e~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~LDiD~T~~~~~G~Qe~~~-~n~y~g----~~ 169 (448)
T PF13701_consen 102 LASQPTLSRLENRPDERDLKR-------LRRALVDLFLASYKKPPKEIVLDIDSTVDDVHGEQEGAV-FNTYYG----ED 169 (448)
T ss_pred ccchhhHHHHHccccHHHHHH-------HHHHHHHHHHHHhccccceEEEecccccccchhhccccc-ccccCC----Cc
Confidence 556778887776665432111 112222211 11235568899999999854332111100 000000 00
Q ss_pred cCCCcceeEEe---ccceEEEeeccc-------HHHHHHHHhccc-----e-EEEEcCCchHHHHHHHHHHcCCCcee
Q 001926 717 REKPHRHLFRF---PHMGMWTKLRPG-------IWTFLERASKLF-----E-MHLYTMGNKLYATEMAKVLDPKGVLF 778 (995)
Q Consensus 717 ~~~P~~~lF~~---~~~~~yVKLRPg-------L~EFLeeLSk~Y-----E-IvIFTAGtkeYAd~VLdiLDP~g~lF 778 (995)
.-.| ++.+ .+.-+-..+||| ..+||+++-+.+ + -+++=+-+--|...+++.++-.+..|
T Consensus 170 gY~P---L~~f~g~~G~~l~a~LRpGn~~sa~g~~~fL~~~l~~lr~~~~~~~ILvR~DSgF~~~el~~~ce~~g~~y 244 (448)
T PF13701_consen 170 GYHP---LVAFDGQTGYLLAAELRPGNVHSAKGAAEFLKRVLRRLRQRWPDTRILVRGDSGFASPELMDWCEAEGVDY 244 (448)
T ss_pred cccc---ceeccCCCCceEEEEccCCCCChHHHHHHHHHHHHHHHhhhCccceEEEEecCccCcHHHHHHHHhCCCeE
Confidence 0011 2222 123345789998 567777754332 2 24566666667778889888777533
No 229
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=29.07 E-value=30 Score=35.23 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=10.7
Q ss_pred EEEEeCCCceee
Q 001926 683 CLVLDLDHTLLN 694 (995)
Q Consensus 683 TLVLDLDETLVH 694 (995)
.+|+||||||+.
T Consensus 3 ~v~FD~DGTL~~ 14 (205)
T PRK13582 3 IVCLDLEGVLVP 14 (205)
T ss_pred EEEEeCCCCChh
Confidence 689999999993
No 230
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=26.09 E-value=1.1e+02 Score=32.06 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=27.0
Q ss_pred eecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHH
Q 001926 735 KLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVL 771 (995)
Q Consensus 735 KLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiL 771 (995)
+.+||+.+|...+.+. |.++--|+-.-..|...-++|
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L 64 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWL 64 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHH
Confidence 5799999999999865 777777776655555555554
No 231
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=26.07 E-value=30 Score=40.62 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=13.6
Q ss_pred eEEEEeCCCceeecc
Q 001926 682 LCLVLDLDHTLLNSA 696 (995)
Q Consensus 682 LTLVLDLDETLVHSs 696 (995)
..+++||||||+++.
T Consensus 242 k~vIFDlDGTLiDs~ 256 (459)
T PRK06698 242 QALIFDMDGTLFQTD 256 (459)
T ss_pred hheeEccCCceecch
Confidence 479999999999986
No 232
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=25.90 E-value=34 Score=36.40 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=13.1
Q ss_pred eEEEEeCCCceeecc
Q 001926 682 LCLVLDLDHTLLNSA 696 (995)
Q Consensus 682 LTLVLDLDETLVHSs 696 (995)
..+++|||||||.|.
T Consensus 3 ~avIFD~DGvLvDse 17 (221)
T COG0637 3 KAVIFDMDGTLVDSE 17 (221)
T ss_pred cEEEEcCCCCcCcch
Confidence 468999999999985
No 233
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=25.68 E-value=97 Score=34.60 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=30.7
Q ss_pred EEeecccHHHHHHHHhcc-ceEEEEcCCchHHHHHHHHHH
Q 001926 733 WTKLRPGIWTFLERASKL-FEMHLYTMGNKLYATEMAKVL 771 (995)
Q Consensus 733 yVKLRPgL~EFLeeLSk~-YEIvIFTAGtkeYAd~VLdiL 771 (995)
-+.+|.|+.+|++.|.+. -=+.||+||.-+-.+.|++.-
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~ 127 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA 127 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc
Confidence 478999999999999986 579999999999999999864
No 234
>PLN02954 phosphoserine phosphatase
Probab=25.61 E-value=35 Score=35.27 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=14.0
Q ss_pred CCeEEEEeCCCceeecc
Q 001926 680 RKLCLVLDLDHTLLNSA 696 (995)
Q Consensus 680 kKLTLVLDLDETLVHSs 696 (995)
....+|+|+|+||+.+.
T Consensus 11 ~~k~viFDfDGTL~~~~ 27 (224)
T PLN02954 11 SADAVCFDVDSTVCVDE 27 (224)
T ss_pred cCCEEEEeCCCcccchH
Confidence 35678899999999875
No 235
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=23.74 E-value=38 Score=35.82 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=11.1
Q ss_pred EEEEeCCCceeec
Q 001926 683 CLVLDLDHTLLNS 695 (995)
Q Consensus 683 TLVLDLDETLVHS 695 (995)
..|+|||+|||..
T Consensus 3 la~FDlD~TLi~~ 15 (203)
T TIGR02137 3 IACLDLEGVLVPE 15 (203)
T ss_pred EEEEeCCcccHHH
Confidence 3799999999964
No 236
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=23.60 E-value=1e+02 Score=37.32 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=38.7
Q ss_pred EeecccHHHHHHHHhcc--ceEEEEcCCchHHHHHHHHHHcCCCceee
Q 001926 734 TKLRPGIWTFLERASKL--FEMHLYTMGNKLYATEMAKVLDPKGVLFA 779 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk~--YEIvIFTAGtkeYAd~VLdiLDP~g~lF~ 779 (995)
..+||++.+.|+++.+. +.++|.|...+.+|..+++.++-+. +|.
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~-~f~ 429 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDE-VHA 429 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCe-eec
Confidence 45899999999999764 8999999999999999999998653 443
No 237
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=23.39 E-value=1.2e+02 Score=33.42 Aligned_cols=49 Identities=14% Similarity=0.330 Sum_probs=39.3
Q ss_pred EeecccHHHHHHHHhc---cceEEEEcCCchHHHHHHHHHHcCCCceeeceEEe
Q 001926 734 TKLRPGIWTFLERASK---LFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 784 (995)
Q Consensus 734 VKLRPgL~EFLeeLSk---~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIyS 784 (995)
+.+.||+.+||+.+.+ .||++|-+.|..-|-+.|++.-+-.. +|.. ||+
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~-~f~~-I~T 121 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD-CFSE-IFT 121 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc-ccce-EEe
Confidence 6789999999999953 79999999999999999998765443 3442 443
No 238
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=23.06 E-value=46 Score=34.16 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=13.8
Q ss_pred CeEEEEeCCCceeecc
Q 001926 681 KLCLVLDLDHTLLNSA 696 (995)
Q Consensus 681 KLTLVLDLDETLVHSs 696 (995)
-..+++|+|+||++..
T Consensus 4 ~k~i~FD~d~TL~d~~ 19 (229)
T COG1011 4 IKAILFDLDGTLLDFD 19 (229)
T ss_pred eeEEEEecCCcccccc
Confidence 4678999999999975
No 239
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=22.06 E-value=40 Score=35.56 Aligned_cols=13 Identities=46% Similarity=0.777 Sum_probs=11.2
Q ss_pred EEEeCCCceeecc
Q 001926 684 LVLDLDHTLLNSA 696 (995)
Q Consensus 684 LVLDLDETLVHSs 696 (995)
+++||||||++..
T Consensus 2 i~~DlDgTLl~~~ 14 (236)
T TIGR02471 2 IITDLDNTLLGDD 14 (236)
T ss_pred eEEeccccccCCH
Confidence 7899999999853
No 240
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=22.00 E-value=53 Score=38.57 Aligned_cols=19 Identities=5% Similarity=0.218 Sum_probs=16.0
Q ss_pred cCCCeEEEEeCCCceeecc
Q 001926 678 SARKLCLVLDLDHTLLNSA 696 (995)
Q Consensus 678 s~kKLTLVLDLDETLVHSs 696 (995)
...-+.+|+|||||||.+.
T Consensus 128 ~~~~~~VIFDlDGTLIDS~ 146 (381)
T PLN02575 128 GCGWLGAIFEWEGVIIEDN 146 (381)
T ss_pred cCCCCEEEEcCcCcceeCH
Confidence 4566789999999999885
No 241
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=21.64 E-value=47 Score=35.55 Aligned_cols=16 Identities=50% Similarity=0.555 Sum_probs=13.8
Q ss_pred CCCeEEEEeCCCceee
Q 001926 679 ARKLCLVLDLDHTLLN 694 (995)
Q Consensus 679 ~kKLTLVLDLDETLVH 694 (995)
..+..+|+|||+|||.
T Consensus 3 ~~~~L~vFD~D~TLi~ 18 (212)
T COG0560 3 RMKKLAVFDLDGTLIN 18 (212)
T ss_pred CccceEEEecccchhh
Confidence 3567899999999998
No 242
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=21.31 E-value=48 Score=34.66 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=14.0
Q ss_pred CeEEEEeCCCceeecc
Q 001926 681 KLCLVLDLDHTLLNSA 696 (995)
Q Consensus 681 KLTLVLDLDETLVHSs 696 (995)
|.++++|+|+||+.+.
T Consensus 3 ~~~vifDfDgTi~~~d 18 (219)
T PRK09552 3 SIQIFCDFDGTITNND 18 (219)
T ss_pred CcEEEEcCCCCCCcch
Confidence 5589999999999875
Done!