Query 001928
Match_columns 995
No_of_seqs 249 out of 756
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 05:02:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cpi_A CCR4-NOT transcription 99.8 7.8E-21 2.7E-25 171.0 10.7 103 98-202 4-106 (111)
2 4fxv_A ELAV-like protein 1; RN 99.6 3.8E-16 1.3E-20 139.3 10.2 81 107-195 17-97 (99)
3 4f25_A Polyadenylate-binding p 99.6 1.7E-15 5.7E-20 137.4 9.5 81 110-200 6-86 (115)
4 3bs9_A Nucleolysin TIA-1 isofo 99.6 2.2E-15 7.7E-20 127.8 9.7 81 109-197 6-86 (87)
5 3s8s_A Histone-lysine N-methyl 99.6 2.4E-15 8.1E-20 136.9 10.5 80 109-196 6-85 (110)
6 3md1_A Nuclear and cytoplasmic 99.6 3.2E-15 1.1E-19 125.8 10.2 80 110-197 2-81 (83)
7 2lxi_A RNA-binding protein 10; 99.6 4.1E-16 1.4E-20 136.6 4.7 80 110-197 2-83 (91)
8 2dnz_A Probable RNA-binding pr 99.6 5.8E-15 2E-19 127.4 11.0 83 109-199 5-87 (95)
9 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.6E-15 1.2E-19 126.0 9.0 80 108-195 6-85 (85)
10 1p27_B RNA-binding protein 8A; 99.6 4.3E-15 1.5E-19 130.9 9.7 84 106-197 20-103 (106)
11 1whw_A Hypothetical protein ri 99.6 5.6E-15 1.9E-19 128.7 10.1 83 108-198 7-89 (99)
12 2lkz_A RNA-binding protein 5; 99.6 2.7E-15 9.1E-20 134.3 7.7 81 108-196 8-94 (95)
13 2e5h_A Zinc finger CCHC-type a 99.6 6.6E-15 2.3E-19 126.8 9.9 82 106-195 13-94 (94)
14 2x1f_A MRNA 3'-END-processing 99.6 6.3E-15 2.2E-19 128.3 9.8 81 110-198 3-83 (96)
15 2do4_A Squamous cell carcinoma 99.6 1.1E-14 3.6E-19 127.5 11.3 83 106-197 14-96 (100)
16 2cqc_A Arginine/serine-rich sp 99.6 5.7E-15 1.9E-19 127.2 9.4 81 108-196 14-94 (95)
17 3ns6_A Eukaryotic translation 99.6 1.5E-15 5.2E-20 134.6 5.9 80 109-196 6-92 (100)
18 4a8x_A RNA-binding protein wit 99.6 4.6E-15 1.6E-19 125.8 8.6 83 108-197 3-85 (88)
19 2cq0_A Eukaryotic translation 99.6 7.8E-15 2.7E-19 128.9 10.0 83 108-198 14-96 (103)
20 2dgs_A DAZ-associated protein 99.6 1.3E-14 4.3E-19 126.8 10.8 83 108-199 9-91 (99)
21 3p5t_L Cleavage and polyadenyl 99.6 2.2E-15 7.4E-20 130.4 5.9 81 109-197 1-83 (90)
22 2cqb_A Peptidyl-prolyl CIS-tra 99.6 5.1E-15 1.7E-19 129.6 8.2 85 108-200 11-95 (102)
23 2dgo_A Cytotoxic granule-assoc 99.6 9.6E-15 3.3E-19 130.7 10.0 83 108-198 14-96 (115)
24 1x5u_A Splicing factor 3B subu 99.6 8E-15 2.8E-19 129.0 9.3 85 108-200 14-98 (105)
25 2la6_A RNA-binding protein FUS 99.6 8.9E-15 3E-19 128.0 9.5 79 109-195 13-99 (99)
26 2ywk_A Putative RNA-binding pr 99.6 8.4E-15 2.9E-19 126.4 9.0 80 108-196 15-94 (95)
27 1x5s_A Cold-inducible RNA-bind 99.6 7.9E-15 2.7E-19 128.4 8.7 83 108-198 11-93 (102)
28 2dnh_A Bruno-like 5, RNA bindi 99.6 1.5E-14 5.2E-19 127.2 10.5 81 109-198 15-98 (105)
29 2cq3_A RNA-binding protein 9; 99.6 1.8E-14 6.3E-19 126.6 11.0 82 109-200 15-96 (103)
30 2d9p_A Polyadenylate-binding p 99.5 1.4E-14 4.7E-19 127.4 10.1 81 108-198 14-94 (103)
31 1x5t_A Splicing factor 3B subu 99.5 6.3E-15 2.1E-19 127.4 7.8 82 109-198 5-87 (96)
32 2cqi_A Nucleolysin TIAR; RNA r 99.5 1.3E-14 4.3E-19 127.6 9.7 81 108-198 14-94 (103)
33 2cph_A RNA binding motif prote 99.5 1.4E-14 4.7E-19 127.6 9.8 82 108-197 14-97 (107)
34 3ulh_A THO complex subunit 4; 99.5 1.5E-14 5.1E-19 127.6 9.8 79 109-196 29-107 (107)
35 1x4h_A RNA-binding protein 28; 99.5 1.4E-14 4.8E-19 128.3 9.6 84 108-199 14-103 (111)
36 1oo0_B CG8781-PA, drosophila Y 99.5 1.3E-14 4.3E-19 129.0 9.3 84 106-197 23-106 (110)
37 2dnm_A SRP46 splicing factor; 99.5 9.6E-15 3.3E-19 128.4 8.4 83 108-198 12-94 (103)
38 2a3j_A U1 small nuclear ribonu 99.5 1E-14 3.6E-19 137.0 9.1 83 109-199 29-112 (127)
39 3ucg_A Polyadenylate-binding p 99.5 1.3E-14 4.5E-19 123.5 8.8 82 108-198 5-86 (89)
40 2dgx_A KIAA0430 protein; RRM d 99.5 1.1E-14 3.7E-19 127.7 8.5 81 109-197 9-90 (96)
41 2cpz_A CUG triplet repeat RNA- 99.5 1.2E-14 4.1E-19 130.3 8.6 83 108-198 24-106 (115)
42 2cpf_A RNA binding motif prote 99.5 1.2E-14 4.1E-19 126.4 8.3 85 109-198 5-89 (98)
43 2err_A Ataxin-2-binding protei 99.5 1.3E-14 4.4E-19 130.4 8.5 80 109-198 29-108 (109)
44 1p1t_A Cleavage stimulation fa 99.5 8.9E-15 3E-19 128.2 7.2 85 109-201 8-92 (104)
45 2kt5_A RNA and export factor-b 99.5 2.5E-14 8.4E-19 130.2 10.2 86 107-201 33-118 (124)
46 2cpe_A RNA-binding protein EWS 99.5 1.8E-14 6.3E-19 128.5 9.1 85 106-198 12-104 (113)
47 2jrs_A RNA-binding protein 39; 99.5 1.9E-14 6.5E-19 129.6 9.1 81 109-197 26-106 (108)
48 2ek1_A RNA-binding protein 12; 99.5 8.9E-15 3.1E-19 126.2 6.6 80 109-196 15-94 (95)
49 2fy1_A RNA-binding motif prote 99.5 2.6E-14 8.7E-19 130.3 9.8 80 109-197 7-86 (116)
50 2dgp_A Bruno-like 4, RNA bindi 99.5 1.6E-14 5.5E-19 127.2 8.1 83 108-198 12-97 (106)
51 3ex7_B RNA-binding protein 8A; 99.5 2.1E-14 7.2E-19 130.4 9.0 84 107-198 20-103 (126)
52 1x4e_A RNA binding motif, sing 99.5 1.1E-14 3.7E-19 123.7 6.3 80 109-196 5-84 (85)
53 2do0_A HnRNP M, heterogeneous 99.5 3.7E-14 1.3E-18 126.4 10.1 79 109-196 15-93 (114)
54 2khc_A Testis-specific RNP-typ 99.5 1.9E-14 6.6E-19 129.3 8.3 80 108-195 39-118 (118)
55 2kxn_B Transformer-2 protein h 99.5 2.3E-14 7.8E-19 133.5 9.0 82 109-198 46-127 (129)
56 1u6f_A Tcubp1, RNA-binding pro 99.5 4.1E-14 1.4E-18 130.4 10.6 83 108-198 41-123 (139)
57 2ki2_A SS-DNA binding protein 99.5 6.3E-15 2.2E-19 126.4 4.6 84 110-202 2-85 (90)
58 2cqp_A RNA-binding protein 12; 99.5 1.4E-14 4.7E-19 126.0 6.7 81 109-197 15-95 (98)
59 1x4a_A Splicing factor, argini 99.5 3.7E-14 1.3E-18 126.1 9.6 81 107-198 20-100 (109)
60 2dgv_A HnRNP M, heterogeneous 99.5 3.1E-14 1.1E-18 122.2 8.8 80 109-198 8-87 (92)
61 1s79_A Lupus LA protein; RRM, 99.5 2.9E-14 9.9E-19 128.7 8.9 80 107-196 9-88 (103)
62 2div_A TRNA selenocysteine ass 99.5 1.7E-14 5.9E-19 125.6 7.0 82 108-197 8-94 (99)
63 2cq4_A RNA binding motif prote 99.5 3.2E-14 1.1E-18 127.4 8.5 83 106-197 22-104 (114)
64 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 3.3E-14 1.1E-18 130.0 8.8 78 109-194 63-140 (140)
65 2diu_A KIAA0430 protein; struc 99.5 2.4E-14 8.2E-19 131.5 7.8 80 109-203 9-90 (96)
66 1why_A Hypothetical protein ri 99.5 7E-14 2.4E-18 122.0 10.2 80 104-197 12-93 (97)
67 2mss_A Protein (musashi1); RNA 99.5 2.1E-14 7E-19 119.4 6.5 75 111-194 1-75 (75)
68 2wbr_A GW182, gawky, LD47780P; 99.5 3.2E-14 1.1E-18 129.0 8.2 73 109-195 7-79 (89)
69 3n9u_C Cleavage and polyadenyl 99.5 2.5E-14 8.4E-19 137.9 7.9 86 108-201 54-141 (156)
70 1h2v_Z 20 kDa nuclear CAP bind 99.5 6.6E-14 2.3E-18 131.9 10.6 81 109-197 39-119 (156)
71 2dhg_A TRNA selenocysteine ass 99.5 3E-14 1E-18 125.1 7.6 81 109-198 9-91 (104)
72 1wi8_A EIF-4B, eukaryotic tran 99.5 5E-14 1.7E-18 124.3 8.7 82 108-198 14-95 (104)
73 2cqd_A RNA-binding region cont 99.5 5.8E-14 2E-18 126.1 9.1 82 107-197 15-96 (116)
74 1x5o_A RNA binding motif, sing 99.5 1.8E-13 6E-18 122.3 12.2 82 107-197 23-112 (114)
75 2krb_A Eukaryotic translation 99.5 2.2E-14 7.5E-19 121.7 6.0 73 110-192 2-81 (81)
76 2cpj_A Non-POU domain-containi 99.5 6E-14 2.1E-18 122.8 9.0 81 106-200 12-92 (99)
77 2dis_A Unnamed protein product 99.5 4.3E-14 1.5E-18 125.1 7.9 82 108-197 7-92 (109)
78 2dng_A Eukaryotic translation 99.5 7.3E-14 2.5E-18 123.0 9.2 80 109-198 15-94 (103)
79 1x4d_A Matrin 3; structural ge 99.5 5.2E-14 1.8E-18 128.4 8.5 76 108-197 14-92 (102)
80 2nlw_A Eukaryotic translation 99.5 4.3E-14 1.5E-18 126.0 7.7 78 109-196 15-99 (105)
81 3r27_A HnRNP L, heterogeneous 99.5 8.5E-14 2.9E-18 127.5 9.6 76 109-198 21-98 (100)
82 2jwn_A Embryonic polyadenylate 99.5 7E-14 2.4E-18 126.6 8.9 81 109-198 36-116 (124)
83 2kn4_A Immunoglobulin G-bindin 99.5 6.5E-14 2.2E-18 131.3 9.0 83 107-197 68-150 (158)
84 1x4b_A Heterogeneous nuclear r 99.5 6.6E-14 2.2E-18 125.7 8.6 82 108-198 26-107 (116)
85 3s7r_A Heterogeneous nuclear r 99.5 1.1E-13 3.7E-18 118.0 9.5 78 108-194 10-87 (87)
86 1nu4_A U1A RNA binding domain; 99.5 3.8E-14 1.3E-18 122.8 6.8 82 109-198 8-90 (97)
87 1sjq_A Polypyrimidine tract-bi 99.5 4.1E-14 1.4E-18 130.5 7.4 79 109-201 16-96 (105)
88 3lqv_A PRE-mRNA branch site pr 99.5 8.6E-14 3E-18 124.5 9.3 79 109-198 8-86 (115)
89 1x4g_A Nucleolysin TIAR; struc 99.5 7.8E-14 2.7E-18 124.3 8.6 76 109-198 25-100 (109)
90 2dh8_A DAZ-associated protein 99.5 5.7E-14 2E-18 123.8 7.6 83 107-198 14-96 (105)
91 2la4_A Nuclear and cytoplasmic 99.5 5.7E-14 1.9E-18 123.1 7.5 75 109-197 27-101 (101)
92 2hvz_A Splicing factor, argini 99.5 4.6E-14 1.6E-18 123.6 6.9 76 110-198 1-76 (101)
93 1fxl_A Paraneoplastic encephal 99.5 2.9E-13 9.8E-18 124.2 12.4 110 109-237 2-111 (167)
94 2cq1_A PTB-like protein L; RRM 99.5 1.4E-13 4.9E-18 124.6 10.2 77 109-199 15-93 (101)
95 2xnq_A Nuclear polyadenylated 99.5 1.3E-13 4.5E-18 121.8 9.7 74 108-197 21-95 (97)
96 1wex_A Hypothetical protein (r 99.5 9.2E-14 3.2E-18 126.2 9.0 78 109-200 15-94 (104)
97 1wg5_A Heterogeneous nuclear r 99.5 1.1E-13 3.8E-18 123.2 9.3 86 108-203 14-100 (104)
98 1rk8_A CG8781-PA, CG8781-PA pr 99.5 9.9E-14 3.4E-18 132.6 9.6 86 104-197 67-152 (165)
99 2dgw_A Probable RNA-binding pr 99.5 1.2E-13 4E-18 119.0 9.1 79 108-197 9-87 (91)
100 2j76_E EIF-4B, EIF4B, eukaryot 99.5 6E-14 2.1E-18 123.8 7.5 80 108-197 18-98 (100)
101 2dnq_A RNA-binding protein 4B; 99.5 1.5E-13 5E-18 118.4 9.5 74 109-198 8-81 (90)
102 3zzy_A Polypyrimidine tract-bi 99.5 1.8E-13 6E-18 130.7 11.0 76 111-198 30-107 (130)
103 1uaw_A Mouse-musashi-1; RNP-ty 99.5 5.2E-14 1.8E-18 116.9 6.4 75 111-194 2-76 (77)
104 1x4c_A Splicing factor, argini 99.5 1.3E-13 4.3E-18 123.3 9.3 75 109-198 15-94 (108)
105 2e44_A Insulin-like growth fac 99.5 8.6E-14 2.9E-18 120.6 7.9 78 108-197 14-92 (96)
106 1whx_A Hypothetical protein ri 99.5 8E-14 2.7E-18 126.2 8.0 74 109-196 10-83 (111)
107 2ytc_A PRE-mRNA-splicing facto 99.5 1.1E-13 3.8E-18 117.2 8.3 73 109-195 12-85 (85)
108 2dgt_A RNA-binding protein 30; 99.5 1.8E-13 6.1E-18 118.3 9.6 76 107-198 8-83 (92)
109 2e5j_A Methenyltetrahydrofolat 99.5 1E-13 3.5E-18 121.2 8.2 77 108-197 18-94 (97)
110 3pgw_S U1-70K; protein-RNA com 99.5 2.9E-13 1E-17 149.6 13.4 91 103-201 96-186 (437)
111 1e4u_A Transcriptional repress 99.5 3.2E-14 1.1E-18 124.6 4.5 68 3-75 8-75 (78)
112 2cpy_A RNA-binding protein 12; 99.4 6.1E-14 2.1E-18 126.7 6.3 86 108-203 14-100 (114)
113 2ad9_A Polypyrimidine tract-bi 99.4 2E-13 6.8E-18 128.1 9.8 78 109-200 31-110 (119)
114 2rs2_A Musashi-1, RNA-binding 99.4 1.8E-13 6.1E-18 123.3 9.1 80 109-197 25-104 (109)
115 1b7f_A Protein (SXL-lethal pro 99.4 3.5E-13 1.2E-17 124.4 11.3 110 109-237 3-112 (168)
116 2cqg_A TDP-43, TAR DNA-binding 99.4 2.3E-13 8E-18 119.6 9.5 79 109-197 15-93 (103)
117 2fc9_A NCL protein; structure 99.4 2.1E-13 7.3E-18 119.4 8.9 78 108-197 14-91 (101)
118 2m2b_A RNA-binding protein 10; 99.4 4.4E-14 1.5E-18 130.5 4.7 80 109-197 23-108 (131)
119 2kvi_A Nuclear polyadenylated 99.4 1.7E-13 5.7E-18 119.9 8.1 76 109-200 10-86 (96)
120 2dgu_A Heterogeneous nuclear r 99.4 1.7E-13 5.8E-18 121.0 8.1 75 108-198 10-84 (103)
121 2jvr_A Nucleolar protein 3; RN 99.4 1.1E-13 3.6E-18 127.7 6.9 77 109-197 28-105 (111)
122 2cpx_A Hypothetical protein FL 99.4 4.5E-14 1.5E-18 126.1 4.3 82 109-198 25-106 (115)
123 2e5i_A Heterogeneous nuclear r 99.4 4.8E-13 1.6E-17 126.2 11.4 75 111-198 27-103 (124)
124 2jvo_A Nucleolar protein 3; nu 99.4 2.4E-13 8.3E-18 122.7 9.0 73 109-197 31-103 (108)
125 2dnp_A RNA-binding protein 14; 99.4 2.2E-13 7.6E-18 117.3 7.9 74 108-197 8-81 (90)
126 2db1_A Heterogeneous nuclear r 99.4 1.3E-13 4.4E-18 126.0 6.8 79 108-196 16-97 (118)
127 2lea_A Serine/arginine-rich sp 99.4 1.1E-13 3.7E-18 129.6 6.4 85 106-198 44-128 (135)
128 2cpd_A Apobec-1 stimulating pr 99.4 4.2E-13 1.5E-17 117.4 9.7 75 108-198 14-90 (99)
129 1x4f_A Matrin 3; structural ge 99.4 1.8E-13 6.2E-18 127.2 7.6 78 109-200 25-105 (112)
130 2qfj_A FBP-interacting repress 99.4 4.5E-13 1.5E-17 128.8 10.6 81 109-197 125-205 (216)
131 3md3_A Nuclear and cytoplasmic 99.4 4.6E-13 1.6E-17 122.7 10.0 80 108-195 86-165 (166)
132 2i2y_A Fusion protein consists 99.4 2.9E-13 9.8E-18 126.8 8.7 79 106-197 70-148 (150)
133 1wez_A HnRNP H', FTP-3, hetero 99.4 2.5E-13 8.6E-18 121.7 7.9 81 106-197 12-92 (102)
134 1wel_A RNA-binding protein 12; 99.4 7.4E-14 2.5E-18 127.6 4.3 81 108-197 24-104 (124)
135 1sjr_A Polypyrimidine tract-bi 99.4 3.5E-13 1.2E-17 133.3 9.3 76 110-197 47-124 (164)
136 1iqt_A AUF1, heterogeneous nuc 99.4 6.9E-14 2.4E-18 115.9 3.5 75 111-194 1-75 (75)
137 3q2s_C Cleavage and polyadenyl 99.4 1.4E-13 4.9E-18 139.7 6.3 85 108-200 67-153 (229)
138 2f3j_A RNA and export factor b 99.4 3.6E-13 1.2E-17 132.0 8.9 87 108-203 87-173 (177)
139 2cqh_A IGF-II mRNA-binding pro 99.4 2E-13 6.7E-18 118.0 6.1 74 109-197 8-83 (93)
140 2g4b_A Splicing factor U2AF 65 99.4 4.3E-13 1.5E-17 124.6 8.6 79 109-195 94-172 (172)
141 2hgl_A HNRPF protein, heteroge 99.4 2E-13 6.8E-18 129.8 6.4 80 108-197 43-125 (136)
142 1wg1_A KIAA1579 protein, homol 99.4 4.1E-13 1.4E-17 115.7 7.7 75 109-198 5-79 (88)
143 2lmi_A GRSF-1, G-rich sequence 99.4 1.5E-13 5E-18 123.0 5.0 80 108-197 10-92 (107)
144 1x5p_A Negative elongation fac 99.4 1E-12 3.6E-17 114.8 10.1 75 108-198 14-88 (97)
145 3md3_A Nuclear and cytoplasmic 99.4 6.6E-13 2.2E-17 121.7 9.1 109 111-237 2-110 (166)
146 1fjc_A Nucleolin RBD2, protein 99.4 3E-13 1E-17 117.2 6.4 78 108-198 15-92 (96)
147 2fc8_A NCL protein; structure 99.4 9.4E-13 3.2E-17 115.2 9.5 82 106-198 12-93 (102)
148 1fj7_A Nucleolin RBD1, protein 99.4 8.1E-14 2.8E-18 122.1 2.7 80 109-198 17-96 (101)
149 1wf1_A RNA-binding protein RAL 99.4 3.9E-13 1.3E-17 120.0 7.1 72 109-196 27-99 (110)
150 4f02_A Polyadenylate-binding p 99.4 6.3E-13 2.2E-17 130.8 9.1 79 109-197 103-181 (213)
151 2lcw_A RNA-binding protein FUS 99.1 3.4E-14 1.2E-18 127.9 0.0 82 109-198 7-96 (116)
152 1l3k_A Heterogeneous nuclear r 99.4 1.5E-12 5E-17 123.4 11.0 115 109-237 13-127 (196)
153 3tyt_A Heterogeneous nuclear r 99.4 8.6E-13 2.9E-17 131.4 9.7 77 108-197 3-80 (205)
154 2xs2_A Deleted in azoospermia- 99.4 3.2E-13 1.1E-17 118.5 5.6 79 109-198 9-87 (102)
155 2cjk_A Nuclear polyadenylated 99.4 6.3E-13 2.2E-17 122.9 7.5 80 109-197 87-166 (167)
156 2dnn_A RNA-binding protein 12; 99.4 1.2E-12 4.1E-17 119.9 9.3 76 110-196 17-92 (109)
157 4f02_A Polyadenylate-binding p 99.4 1.4E-12 4.6E-17 128.5 10.3 111 109-236 15-125 (213)
158 2qfj_A FBP-interacting repress 99.4 1.6E-12 5.5E-17 124.9 10.3 117 110-237 29-148 (216)
159 2yh0_A Splicing factor U2AF 65 99.4 1E-12 3.6E-17 124.6 8.8 83 107-197 112-194 (198)
160 2e5g_A U6 snRNA-specific termi 99.4 1.1E-12 3.7E-17 114.1 8.1 75 109-197 8-82 (94)
161 1b7f_A Protein (SXL-lethal pro 99.4 2.1E-12 7.1E-17 119.3 10.3 80 107-194 87-168 (168)
162 3nmr_A Cugbp ELAV-like family 99.4 1.9E-12 6.5E-17 119.9 9.8 79 107-194 93-174 (175)
163 3egn_A RNA-binding protein 40; 99.4 8.2E-13 2.8E-17 122.9 7.3 78 109-197 45-130 (143)
164 3beg_B Splicing factor, argini 99.3 1.3E-12 4.4E-17 118.7 7.7 69 109-192 16-84 (115)
165 1fxl_A Paraneoplastic encephal 99.3 2.9E-12 9.9E-17 117.5 10.0 79 108-194 87-167 (167)
166 3pgw_A U1-A; protein-RNA compl 99.3 3.3E-12 1.1E-16 129.0 11.1 83 107-197 7-90 (282)
167 1l3k_A Heterogeneous nuclear r 99.3 3.2E-12 1.1E-16 121.1 9.4 81 109-198 104-184 (196)
168 2pe8_A Splicing factor 45; RRM 99.3 5.7E-12 1.9E-16 114.6 10.5 81 109-196 8-93 (105)
169 2dha_A FLJ20171 protein; RRM d 99.3 8.7E-13 3E-17 123.6 4.5 77 109-195 23-103 (123)
170 3d2w_A TAR DNA-binding protein 99.3 5E-12 1.7E-16 110.5 8.6 75 106-197 8-84 (89)
171 2hgn_A Heterogeneous nuclear r 99.3 9.1E-13 3.1E-17 125.9 4.0 78 109-197 46-123 (139)
172 2hgm_A HNRPF protein, heteroge 99.3 2E-12 6.7E-17 122.1 5.9 79 108-197 41-121 (126)
173 1fje_B Nucleolin RBD12, protei 99.3 6.2E-12 2.1E-16 117.8 9.2 77 108-197 98-174 (175)
174 2hzc_A Splicing factor U2AF 65 99.3 4.4E-12 1.5E-16 107.5 7.1 71 108-193 5-86 (87)
175 2cq2_A Hypothetical protein LO 99.3 2.2E-12 7.6E-17 120.6 5.7 74 109-196 25-105 (114)
176 3smz_A Protein raver-1, ribonu 99.3 7.5E-12 2.6E-16 126.6 9.7 83 107-198 182-265 (284)
177 2bz2_A Negative elongation fac 99.3 7.4E-12 2.5E-16 115.7 8.9 75 108-198 38-112 (121)
178 3s6e_A RNA-binding protein 39; 99.3 3.8E-12 1.3E-16 118.1 5.9 73 130-211 35-108 (114)
179 2dnl_A Cytoplasmic polyadenyla 99.3 1.1E-11 3.9E-16 111.8 8.7 80 109-196 8-87 (114)
180 1qm9_A Polypyrimidine tract-bi 99.3 5.2E-12 1.8E-16 121.1 6.8 77 109-198 3-80 (198)
181 3nmr_A Cugbp ELAV-like family 99.2 1.4E-11 4.8E-16 114.1 9.2 112 110-237 4-118 (175)
182 3pgw_A U1-A; protein-RNA compl 99.2 1.3E-11 4.5E-16 124.6 9.7 75 108-195 206-281 (282)
183 2ghp_A U4/U6 snRNA-associated 99.2 7.8E-12 2.7E-16 126.9 8.0 83 107-197 208-291 (292)
184 2voo_A Lupus LA protein; RNA-b 99.2 1.1E-11 3.7E-16 122.8 8.5 81 106-196 106-186 (193)
185 3v4m_A Splicing factor U2AF 65 99.2 1.5E-11 5.2E-16 111.7 8.7 64 130-196 33-96 (105)
186 2adc_A Polypyrimidine tract-bi 99.2 1.5E-11 5.1E-16 122.3 9.1 79 107-198 32-111 (229)
187 2dit_A HIV TAT specific factor 99.2 2.4E-11 8.2E-16 109.7 9.5 77 108-196 14-101 (112)
188 3u1l_A PRE-mRNA-splicing facto 99.2 1.3E-11 4.3E-16 128.3 8.1 76 108-197 133-229 (240)
189 1jmt_A Splicing factor U2AF 35 99.2 3E-12 1E-16 115.9 2.9 75 114-194 20-103 (104)
190 1wf0_A TDP-43, TAR DNA-binding 99.2 6.1E-12 2.1E-16 107.9 4.6 74 108-198 4-79 (88)
191 2cjk_A Nuclear polyadenylated 99.2 1.3E-11 4.5E-16 114.1 7.1 108 109-237 3-110 (167)
192 1qm9_A Polypyrimidine tract-bi 99.2 1.2E-11 4.2E-16 118.5 7.2 76 109-197 120-197 (198)
193 3sde_A Paraspeckle component 1 99.2 2.5E-11 8.7E-16 123.1 9.6 102 105-237 18-119 (261)
194 3smz_A Protein raver-1, ribonu 99.2 4.1E-11 1.4E-15 121.2 10.4 113 109-237 95-208 (284)
195 2ghp_A U4/U6 snRNA-associated 99.2 3.2E-11 1.1E-15 122.4 9.3 102 107-237 39-140 (292)
196 2adc_A Polypyrimidine tract-bi 99.2 3.7E-11 1.3E-15 119.5 9.5 76 109-197 151-228 (229)
197 1fje_B Nucleolin RBD12, protei 99.2 1.1E-11 3.6E-16 116.2 3.8 111 108-237 12-122 (175)
198 2j8a_A Histone-lysine N-methyl 99.1 3.3E-11 1.1E-15 116.7 6.3 79 110-196 3-95 (136)
199 2yh0_A Splicing factor U2AF 65 99.1 1.3E-10 4.5E-15 110.2 9.7 111 109-237 4-137 (198)
200 3ue2_A Poly(U)-binding-splicin 99.1 3.2E-11 1.1E-15 112.4 5.0 83 110-196 21-108 (118)
201 2g4b_A Splicing factor U2AF 65 99.1 9.6E-11 3.3E-15 108.8 8.0 104 108-237 3-117 (172)
202 3sde_A Paraspeckle component 1 99.1 2.4E-10 8.4E-15 115.9 8.9 81 108-197 95-179 (261)
203 3tyt_A Heterogeneous nuclear r 99.1 1.4E-10 4.8E-15 115.5 6.6 69 109-187 123-193 (205)
204 2d9o_A DNAJ (HSP40) homolog, s 98.9 1.5E-09 5.2E-14 98.7 7.1 65 119-198 27-91 (100)
205 3tht_A Alkylated DNA repair pr 98.9 1.4E-09 4.9E-14 118.1 7.8 83 103-199 10-101 (345)
206 3dxb_A Thioredoxin N-terminall 98.8 8.6E-09 2.9E-13 102.1 7.8 65 130-195 147-211 (222)
207 2dnr_A Synaptojanin-1; RRM dom 98.6 4.2E-08 1.4E-12 89.6 7.5 55 130-198 33-87 (91)
208 1owx_A Lupus LA protein, SS-B, 98.5 3.6E-07 1.2E-11 86.8 9.7 78 102-193 11-92 (121)
209 1ufw_A Synaptojanin 2; RNP dom 98.3 2.9E-07 1E-11 84.7 3.8 52 130-195 42-93 (95)
210 2ct2_A Tripartite motif protei 98.1 2.1E-06 7.2E-11 73.6 4.7 60 4-66 13-72 (88)
211 2ecm_A Ring finger and CHY zin 97.8 1.6E-05 5.3E-10 62.9 3.8 53 3-61 2-54 (55)
212 2l9w_A U4/U6 snRNA-associated- 97.8 3.8E-05 1.3E-09 73.0 7.0 68 111-192 23-95 (117)
213 3ztg_A E3 ubiquitin-protein li 97.7 1.6E-05 5.5E-10 69.3 3.7 49 5-60 12-60 (92)
214 2ect_A Ring finger protein 126 97.7 2.4E-05 8.1E-10 66.3 3.9 56 4-66 13-68 (78)
215 3ng2_A RNF4, snurf, ring finge 97.7 1.4E-05 4.9E-10 66.1 2.1 58 3-66 7-67 (71)
216 2ysl_A Tripartite motif-contai 97.6 2.6E-05 9E-10 65.0 3.2 55 4-65 18-72 (73)
217 2ecv_A Tripartite motif-contai 97.6 5.4E-05 1.8E-09 64.0 5.1 57 5-65 18-74 (85)
218 1g25_A CDK-activating kinase a 97.6 2.7E-05 9.2E-10 64.1 3.2 57 5-66 2-59 (65)
219 2xeu_A Ring finger protein 4; 97.6 1.8E-05 6E-10 64.0 1.8 56 5-66 2-60 (64)
220 2ecw_A Tripartite motif-contai 97.6 4.6E-05 1.6E-09 64.4 4.2 57 5-65 18-74 (85)
221 2ea6_A Ring finger protein 4; 97.6 2.6E-05 8.9E-10 63.8 2.3 53 4-62 13-68 (69)
222 1iym_A EL5; ring-H2 finger, ub 97.5 5.8E-05 2E-09 59.8 3.7 51 4-60 3-53 (55)
223 1x4j_A Ring finger protein 38; 97.5 2.8E-05 9.5E-10 65.7 1.8 53 4-63 21-73 (75)
224 2kiz_A E3 ubiquitin-protein li 97.5 6.5E-05 2.2E-09 62.2 3.8 53 4-63 12-64 (69)
225 2ep4_A Ring finger protein 24; 97.4 7.9E-05 2.7E-09 62.5 3.5 52 4-62 13-64 (74)
226 2ckl_B Ubiquitin ligase protei 97.4 6.5E-05 2.2E-09 72.4 3.2 50 6-63 54-103 (165)
227 2d8t_A Dactylidin, ring finger 97.4 4.7E-05 1.6E-09 63.9 1.9 52 4-65 13-64 (71)
228 2ecn_A Ring finger protein 141 97.4 4.3E-05 1.5E-09 63.5 1.6 54 4-68 13-66 (70)
229 2y43_A E3 ubiquitin-protein li 97.4 0.00013 4.6E-09 64.6 4.4 52 5-65 21-72 (99)
230 1v87_A Deltex protein 2; ring- 97.3 9.4E-05 3.2E-09 66.8 3.4 59 4-63 23-95 (114)
231 3l11_A E3 ubiquitin-protein li 97.3 8.6E-05 3E-09 67.4 3.0 50 4-62 13-62 (115)
232 2vje_A E3 ubiquitin-protein li 97.3 8.6E-05 2.9E-09 62.2 2.5 53 2-62 4-57 (64)
233 2l0b_A E3 ubiquitin-protein li 97.2 0.00011 3.7E-09 64.9 2.3 52 4-62 38-89 (91)
234 2ecy_A TNF receptor-associated 97.2 0.0002 6.7E-09 59.1 3.1 52 5-65 14-65 (66)
235 4ayc_A E3 ubiquitin-protein li 97.1 0.00016 5.4E-09 68.2 2.2 50 5-64 52-101 (138)
236 2djb_A Polycomb group ring fin 97.1 0.0003 1E-08 59.1 3.5 54 4-66 13-66 (72)
237 1chc_A Equine herpes virus-1 r 97.1 0.00032 1.1E-08 57.8 3.4 50 4-62 3-52 (68)
238 3fl2_A E3 ubiquitin-protein li 97.0 0.00041 1.4E-08 63.9 4.3 49 5-62 51-99 (124)
239 1jm7_A BRCA1, breast cancer ty 97.0 0.00094 3.2E-08 59.7 6.5 55 5-66 20-74 (112)
240 1wey_A Calcipressin 1; structu 97.0 0.00047 1.6E-08 64.5 4.7 76 109-195 5-82 (104)
241 3lrq_A E3 ubiquitin-protein li 97.0 0.00042 1.4E-08 62.1 4.1 54 5-66 21-74 (100)
242 2ecl_A Ring-box protein 2; RNF 97.0 0.00034 1.2E-08 60.7 3.4 57 3-65 12-79 (81)
243 2egp_A Tripartite motif-contai 97.0 0.00021 7.1E-09 60.2 1.4 58 4-65 10-68 (79)
244 1t1h_A Gspef-atpub14, armadill 96.9 0.00056 1.9E-08 57.9 3.9 53 4-65 6-58 (78)
245 2csy_A Zinc finger protein 183 96.9 0.00054 1.9E-08 58.6 3.5 46 6-61 15-60 (81)
246 2kr4_A Ubiquitin conjugation f 96.9 0.0012 3.9E-08 58.2 5.6 51 5-65 13-63 (85)
247 1wim_A KIAA0161 protein; ring 96.8 0.00081 2.8E-08 59.4 4.2 60 5-66 4-70 (94)
248 1wwh_A Nucleoporin 35, nucleop 96.8 0.0023 7.8E-08 61.2 7.4 70 106-191 21-91 (119)
249 2vje_B MDM4 protein; proto-onc 96.8 0.00046 1.6E-08 57.6 2.3 51 4-62 5-56 (63)
250 2d8s_A Cellular modulator of i 96.8 0.00073 2.5E-08 59.6 3.5 58 3-64 12-72 (80)
251 2yur_A Retinoblastoma-binding 96.8 0.00081 2.8E-08 57.0 3.6 50 5-62 14-64 (74)
252 4ap4_A E3 ubiquitin ligase RNF 96.8 0.00041 1.4E-08 62.8 1.8 57 4-66 5-64 (133)
253 2ecg_A Baculoviral IAP repeat- 96.7 0.0005 1.7E-08 58.6 2.1 44 6-63 25-69 (75)
254 2kre_A Ubiquitin conjugation f 96.7 0.0012 4.1E-08 60.1 4.5 50 6-65 29-78 (100)
255 1z6u_A NP95-like ring finger p 96.7 0.001 3.4E-08 64.3 4.0 50 5-63 77-126 (150)
256 2ea5_A Cell growth regulator w 96.7 0.0011 3.7E-08 56.4 3.7 48 2-63 11-59 (68)
257 2ckl_A Polycomb group ring fin 96.6 0.0011 3.6E-08 59.8 3.5 51 4-63 13-63 (108)
258 1rmd_A RAG1; V(D)J recombinati 96.6 0.0013 4.5E-08 59.7 3.9 53 5-66 22-74 (116)
259 4ap4_A E3 ubiquitin ligase RNF 96.5 0.00073 2.5E-08 61.2 1.8 58 3-66 69-129 (133)
260 3dpl_R Ring-box protein 1; ubi 96.5 0.0019 6.4E-08 59.7 4.2 54 3-62 34-101 (106)
261 1wgm_A Ubiquitin conjugation f 96.4 0.0031 1.1E-07 57.2 5.3 51 5-65 21-72 (98)
262 1bor_A Transcription factor PM 96.4 0.0013 4.5E-08 53.3 2.4 47 3-62 3-49 (56)
263 3hct_A TNF receptor-associated 96.4 0.002 6.9E-08 59.1 3.8 52 5-65 17-68 (118)
264 1jm7_B BARD1, BRCA1-associated 96.4 0.0017 5.8E-08 59.5 3.3 49 5-64 21-69 (117)
265 4ic3_A E3 ubiquitin-protein li 96.3 0.001 3.5E-08 56.8 1.2 46 5-64 23-69 (74)
266 2ysj_A Tripartite motif-contai 96.2 0.0032 1.1E-07 51.3 3.8 46 4-56 18-63 (63)
267 3hcs_A TNF receptor-associated 96.0 0.0037 1.3E-07 60.4 3.8 53 4-65 16-68 (170)
268 1vyx_A ORF K3, K3RING; zinc-bi 95.9 0.0055 1.9E-07 51.4 3.8 52 1-61 1-58 (60)
269 2yho_A E3 ubiquitin-protein li 95.9 0.0021 7.3E-08 56.0 1.3 51 5-69 17-68 (79)
270 2c2l_A CHIP, carboxy terminus 95.9 0.0033 1.1E-07 63.5 2.8 52 5-65 207-258 (281)
271 2ecj_A Tripartite motif-contai 95.7 0.0087 3E-07 47.4 3.9 45 5-56 14-58 (58)
272 2y1n_A E3 ubiquitin-protein li 95.6 0.0066 2.3E-07 67.6 4.1 52 6-66 332-383 (389)
273 2yu4_A E3 SUMO-protein ligase 95.6 0.019 6.4E-07 51.2 6.3 59 4-65 5-66 (94)
274 1weo_A Cellulose synthase, cat 95.6 0.015 5E-07 53.6 5.5 53 5-62 15-70 (93)
275 4a0k_B E3 ubiquitin-protein li 95.6 0.0024 8.1E-08 60.4 0.3 53 3-61 45-111 (117)
276 3knv_A TNF receptor-associated 95.4 0.0035 1.2E-07 60.1 0.8 47 5-60 30-76 (141)
277 3htk_C E3 SUMO-protein ligase 94.8 0.026 9E-07 60.2 5.3 52 6-65 181-235 (267)
278 2f42_A STIP1 homology and U-bo 94.4 0.017 5.8E-07 58.2 2.6 52 5-65 105-156 (179)
279 3ctr_A Poly(A)-specific ribonu 94.1 0.046 1.6E-06 51.2 4.6 56 109-180 5-60 (101)
280 3p3d_A Nucleoporin 53; structu 93.9 0.026 8.8E-07 54.9 2.7 79 109-192 7-94 (132)
281 1whv_A Poly(A)-specific ribonu 93.8 0.053 1.8E-06 50.7 4.6 56 109-180 15-70 (100)
282 1uw4_A UPF3X; nonsense mediate 93.4 0.27 9.2E-06 44.9 8.4 69 110-184 2-70 (91)
283 2i2y_A Fusion protein consists 92.5 0.087 3E-06 49.1 3.9 75 159-237 13-96 (150)
284 3pq1_A Poly(A) RNA polymerase; 91.6 0.055 1.9E-06 61.5 1.7 54 110-177 54-107 (464)
285 2dhx_A Poly (ADP-ribose) polym 90.1 0.78 2.7E-05 43.2 7.7 67 109-192 8-79 (104)
286 2ct0_A Non-SMC element 1 homol 89.9 0.28 9.6E-06 43.1 4.3 52 4-63 13-65 (74)
287 2kn4_A Immunoglobulin G-bindin 89.8 0.5 1.7E-05 44.1 6.2 77 158-237 12-93 (158)
288 2bay_A PRE-mRNA splicing facto 89.7 0.14 4.8E-06 42.9 2.1 52 7-67 4-55 (61)
289 3k1l_B Fancl; UBC, ring, RWD, 87.1 0.43 1.5E-05 53.1 4.4 60 4-63 306-374 (381)
290 3nw0_A Non-structural maintena 81.5 1.1 3.9E-05 46.5 4.4 52 5-64 179-231 (238)
291 2l08_A Regulator of nonsense t 81.2 2.3 7.8E-05 39.5 5.8 68 111-184 11-78 (97)
292 3d2q_A Muscleblind-like protei 68.7 1.6 5.6E-05 37.4 1.3 26 194-220 40-65 (70)
293 2d9n_A Cleavage and polyadenyl 65.0 2.7 9.2E-05 36.6 1.9 26 196-221 38-63 (77)
294 3d45_A Poly(A)-specific ribonu 64.5 8.5 0.00029 44.0 6.3 57 108-180 438-494 (507)
295 2jne_A Hypothetical protein YF 63.0 0.6 2.1E-05 43.7 -2.7 42 7-63 33-74 (101)
296 3vth_A Hydrogenase maturation 59.7 1.3 4.5E-05 53.1 -1.3 31 159-191 224-254 (761)
297 2rhk_C Cleavage and polyadenyl 59.2 2.7 9.2E-05 36.5 0.9 25 196-220 44-68 (72)
298 3vk6_A E3 ubiquitin-protein li 55.6 7.4 0.00025 36.6 3.2 47 8-62 3-49 (101)
299 2zet_C Melanophilin; complex, 52.6 5.7 0.0002 39.2 2.0 49 5-58 67-116 (153)
300 3d2n_A Muscleblind-like protei 52.3 4.3 0.00015 36.4 1.0 26 194-220 41-66 (83)
301 2jrp_A Putative cytoplasmic pr 51.5 1.8 6E-05 39.3 -1.6 41 7-62 3-43 (81)
302 3u1l_A PRE-mRNA-splicing facto 48.6 3.6 0.00012 43.0 -0.0 30 195-225 69-99 (240)
303 2e5s_A Otthump00000018578; ZF- 47.0 5.1 0.00017 36.8 0.7 26 194-220 54-79 (98)
304 2cs3_A Protein C14ORF4, MY039 46.3 23 0.0008 32.5 4.7 61 2-65 11-74 (93)
305 2rpp_A Muscleblind-like protei 45.2 5.7 0.00019 36.2 0.7 25 195-220 50-74 (89)
306 1zbd_B Rabphilin-3A; G protein 42.7 9.9 0.00034 36.8 2.0 37 4-40 53-90 (134)
307 1m9o_A Tristetraproline; Cys3H 41.2 17 0.00057 30.9 2.9 27 195-221 11-38 (77)
308 2gmg_A Hypothetical protein PF 40.3 8.3 0.00028 36.5 1.0 29 25-64 69-98 (105)
309 2e5s_A Otthump00000018578; ZF- 36.9 6.2 0.00021 36.3 -0.4 24 198-222 22-47 (98)
310 3d2q_A Muscleblind-like protei 35.6 12 0.00041 32.0 1.2 23 198-221 8-32 (70)
311 2d9n_A Cleavage and polyadenyl 35.2 17 0.00057 31.6 2.0 27 195-222 9-36 (77)
312 3d2n_A Muscleblind-like protei 34.3 17 0.00057 32.6 1.9 23 198-221 11-35 (83)
313 2rpp_A Muscleblind-like protei 32.9 13 0.00044 33.9 0.9 24 198-222 19-44 (89)
314 2rhk_C Cleavage and polyadenyl 32.3 16 0.00056 31.6 1.5 27 194-221 14-41 (72)
315 2csz_A Synaptotagmin-like prot 26.1 27 0.00093 31.3 1.8 33 4-36 23-56 (76)
316 4g9i_A Hydrogenase maturation 24.2 8.8 0.0003 46.2 -2.2 32 159-192 222-253 (772)
317 2j9u_B VPS36, vacuolar protein 24.0 35 0.0012 30.7 2.1 26 6-31 17-49 (76)
318 2cqe_A KIAA1064 protein; CCCH 24.0 35 0.0012 31.2 2.2 23 195-218 12-35 (98)
319 2yko_A LINE-1 ORF1P; RNA-bindi 23.4 2.3E+02 0.0079 30.0 8.4 136 107-244 50-214 (233)
320 2czv_C Ribonuclease P protein 23.1 83 0.0028 29.4 4.6 97 99-205 6-116 (120)
321 1v33_A DNA primase small subun 23.1 29 0.00098 38.6 1.7 29 14-42 114-143 (366)
322 3ttc_A HYPF, transcriptional r 23.1 8.9 0.0003 45.5 -2.4 32 159-192 133-164 (657)
323 1m9o_A Tristetraproline; Cys3H 22.2 19 0.00064 30.6 0.0 26 196-221 50-76 (77)
324 2hf1_A Tetraacyldisaccharide-1 21.8 14 0.00049 32.1 -0.8 30 7-62 9-38 (68)
325 1twf_L ABC10-alpha, DNA-direct 21.3 36 0.0012 29.8 1.6 9 50-58 45-53 (70)
326 1z2q_A LM5-1; membrane protein 20.9 55 0.0019 28.8 2.8 39 1-39 16-54 (84)
No 1
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=7.8e-21 Score=171.00 Aligned_cols=103 Identities=45% Similarity=0.779 Sum_probs=90.9
Q ss_pred cCCCCCcccccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHH
Q 001928 98 RMHLTNVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQ 177 (995)
Q Consensus 98 RK~LanVRVIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIq 177 (995)
-++++++|++++++|||+|||+.+++++|++..++|++||+|.+|.|.++..+. ....++|+|||+|.+.++|.+||+
T Consensus 4 ~s~~~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~--~~~~~~G~afV~f~~~~~A~~Ai~ 81 (111)
T 2cpi_A 4 GSSGASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYA--GSQGPSASAYVTYIRSEDALRAIQ 81 (111)
T ss_dssp CSSCSCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCC--SSSCCCEEEEEEESSHHHHHHHHH
T ss_pred CCCCccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcC--ccCCCCeEEEEEECcHHHHHHHHH
Confidence 358899999999999999999999999985334899999999999998776432 112457999999999999999999
Q ss_pred HhCCCCCCCeEEEEEeccCCccccc
Q 001928 178 SVHSYILDGRPLRACFGTTKYCHAW 202 (995)
Q Consensus 178 aLNG~~LdGRvLRASfGTTKYCs~F 202 (995)
.|||..++||.|+|.|+++|+|+.|
T Consensus 82 ~lng~~~~gr~l~V~~a~~k~~~~~ 106 (111)
T 2cpi_A 82 CVNNVVVDGRTLKASLGTTKYCSYS 106 (111)
T ss_dssp HHTTEEETTEEEEEESCCCCSCSST
T ss_pred HhCCCEECCEEEEEEeccccccccc
Confidence 9999999999999999999999876
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.65 E-value=3.8e-16 Score=139.30 Aligned_cols=81 Identities=19% Similarity=0.373 Sum_probs=72.8
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
.|...|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .++|+|||+|.+.++|.+||+.|||..++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg-----~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELR---SLFSSIGEVESAKLIRDKVAG-----HSLGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEECSSSC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEeEeeecCCCC-----cccccEEEEECCHHHHHHHHHHhCCCEECC
Confidence 456779999999999998874 899999999999999876532 467899999999999999999999999999
Q ss_pred eEEEEEecc
Q 001928 187 RPLRACFGT 195 (995)
Q Consensus 187 RvLRASfGT 195 (995)
|.|+|.|+.
T Consensus 89 r~l~V~~Ak 97 (99)
T 4fxv_A 89 KTIKVSYAR 97 (99)
T ss_dssp EECEEEECC
T ss_pred EEEEEEEee
Confidence 999999984
No 3
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.60 E-value=1.7e-15 Score=137.36 Aligned_cols=81 Identities=15% Similarity=0.338 Sum_probs=72.0
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001928 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
..|||+|||+.+++++|. ++|++||+|..|.|.+++.+ ++|+|||+|.+.|+|.+||+.|||..++||.|
T Consensus 6 ~~lfV~nLp~~~te~~L~---~~F~~~G~v~~v~i~~d~~~-------~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i 75 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALY---DTFSAFGNILSCKVVCDENG-------SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 75 (115)
T ss_dssp CEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEEETTE-------EEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEECCCCCCCCHHHHH---HHHhccCCEEEEEEeecCCC-------CCceEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 469999999999988874 89999999999999987532 47899999999999999999999999999999
Q ss_pred EEEeccCCccc
Q 001928 190 RACFGTTKYCH 200 (995)
Q Consensus 190 RASfGTTKYCs 200 (995)
+|.++..|...
T Consensus 76 ~V~~a~~~~~~ 86 (115)
T 4f25_A 76 FVGRFKSRKER 86 (115)
T ss_dssp EEEESSCCCC-
T ss_pred EEEECCCcccc
Confidence 99998876543
No 4
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=127.77 Aligned_cols=81 Identities=17% Similarity=0.328 Sum_probs=71.6
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||..+++++|. ++|++||+|.+|.|.+++... .++++|||+|.+.++|.+||+.|||..++|+.
T Consensus 6 ~~~l~v~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIA---AAFAPFGRISDARVVKDMATG-----KSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 77 (87)
T ss_dssp CEEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred ceEEEEeCCCCCCCHHHHH---HHHHhcCCEeEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4679999999999998874 899999999999999875432 35789999999999999999999999999999
Q ss_pred EEEEeccCC
Q 001928 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|+|.|+..|
T Consensus 78 l~v~~a~~k 86 (87)
T 3bs9_A 78 IRTNWATRK 86 (87)
T ss_dssp CEEEEEC--
T ss_pred EEEEecCCC
Confidence 999999876
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=136.94 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=72.1
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
.+.|||+||++.+++++|. ++|++||+|.+|.|.++..+. .++|+|||+|.+.++|.+||+.|||..++||.
T Consensus 6 ~~~lfV~nL~~~~te~~L~---~~F~~~G~i~~v~i~~d~~tg-----~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~ 77 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLK---DMCRKYGEVEEVEILLHPRTR-----KHLGLARVLFTSTRGAKETVKNLHLTSVMGNI 77 (110)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CcEEEEECCCCCCCHHHHH---HHHHhcCCeeEEEEEECCCCC-----ceeeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 4679999999999888874 899999999999999887532 46899999999999999999999999999999
Q ss_pred EEEEeccC
Q 001928 189 LRACFGTT 196 (995)
Q Consensus 189 LRASfGTT 196 (995)
|+|.++..
T Consensus 78 i~V~~a~~ 85 (110)
T 3s8s_A 78 IHAQLDIK 85 (110)
T ss_dssp CEEEECST
T ss_pred EEEEECCC
Confidence 99999864
No 6
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=3.2e-15 Score=125.83 Aligned_cols=80 Identities=21% Similarity=0.375 Sum_probs=71.9
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001928 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
..|||+|||+.+++++|. ++|++||+|.+|.|.+++... .++++|||+|.+.++|.+||..|||..++||.|
T Consensus 2 ~~l~V~nlp~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~~-----~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 73 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLR---NAFKDFPSYLSGHVMWDMQTG-----SSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 73 (83)
T ss_dssp EEEEEECCCTTCCHHHHH---HHHTTSTTEEEEEEEECTTTC-----CEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred eEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEEcCCCC-----CccceEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 369999999999998874 899999999999998875432 357899999999999999999999999999999
Q ss_pred EEEeccCC
Q 001928 190 RACFGTTK 197 (995)
Q Consensus 190 RASfGTTK 197 (995)
+|.|+..|
T Consensus 74 ~v~~a~~~ 81 (83)
T 3md1_A 74 RINWAAKL 81 (83)
T ss_dssp EEEECCCC
T ss_pred EEEecCcC
Confidence 99999875
No 7
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.60 E-value=4.1e-16 Score=136.62 Aligned_cols=80 Identities=19% Similarity=0.346 Sum_probs=71.1
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCC-ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC-CCCCCCe
Q 001928 110 NLVYIIGLPINLADEDLLQRKEYFGQYG-KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH-SYILDGR 187 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYG-KIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLN-G~~LdGR 187 (995)
|.|||.|||+.+++++|. ++|++|| +|..|.|.+++.+. .++|+|||+|.+.|+|.+||+.++ |..++||
T Consensus 2 ~~i~v~nLp~~~te~~l~---~~F~~~G~~v~~v~i~~d~~t~-----~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr 73 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIR---GQLQSHGVQAREVRLMRNKSSG-----QSRGFAFVEFSHLQDATRWMEANQHSLNILGQ 73 (91)
T ss_dssp CEEEEETCCSSCCHHHHH---HHHHHHTCCCSBCCSSSCSSSC-----CCSSEEEEECSSHHHHHHHHHTTTTEEEETTE
T ss_pred CEEEEeCCCCCCCHHHHH---HHHHHhCCEeEEEEEEecCCCC-----CcCceEEEEecCHHHHHHHHHhcCCCeEECCE
Confidence 789999999999999974 8999999 89999998876542 468999999999999999999885 5679999
Q ss_pred EEEEEeccCC
Q 001928 188 PLRACFGTTK 197 (995)
Q Consensus 188 vLRASfGTTK 197 (995)
.|+|.|+..|
T Consensus 74 ~i~V~~a~~~ 83 (91)
T 2lxi_A 74 KVSMHYSDPK 83 (91)
T ss_dssp EEEEECCCSC
T ss_pred EEEEEEcCCC
Confidence 9999999875
No 8
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.8e-15 Score=127.44 Aligned_cols=83 Identities=22% Similarity=0.411 Sum_probs=74.3
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||.|||+.+++++|. ++|++||+|.+|.|.+++.+. .++++|||+|.+.++|.+||..|||..++|+.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLR---GIFEPFGKIDNIVLMKDSDTG-----RSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEECCSSSC-----CCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhcCCEeEEEEeecCCCC-----ceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 3679999999999999974 899999999999999876432 46789999999999999999999999999999
Q ss_pred EEEEeccCCcc
Q 001928 189 LRACFGTTKYC 199 (995)
Q Consensus 189 LRASfGTTKYC 199 (995)
|+|.|+..|-.
T Consensus 77 l~V~~a~~~~~ 87 (95)
T 2dnz_A 77 MRVGHVTERLD 87 (95)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEEcccccC
Confidence 99999988754
No 9
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.58 E-value=3.6e-15 Score=125.99 Aligned_cols=80 Identities=19% Similarity=0.380 Sum_probs=71.2
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++||+|.+|.|.+++... .++++|||+|.+.++|.+||+.|||..++|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 77 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLH---AAFIPFGDITDIQIPLDYETE-----KHRGFAFVEFELAEDAAAAIDNMNESELFGR 77 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHH---HHHGGGSCEEEEECCEETTTT-----EECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHhccCCEEEEEEEECCCCC-----ccccEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 46789999999999988874 899999999999998875432 3578999999999999999999999999999
Q ss_pred EEEEEecc
Q 001928 188 PLRACFGT 195 (995)
Q Consensus 188 vLRASfGT 195 (995)
.|+|.|+.
T Consensus 78 ~l~v~~ak 85 (85)
T 3mdf_A 78 TIRVNLAK 85 (85)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999973
No 10
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.3e-15 Score=130.91 Aligned_cols=84 Identities=13% Similarity=0.334 Sum_probs=74.8
Q ss_pred cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 106 VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
......|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .++++|||+|.+.++|.+||..|||..++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 91 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIH---DKFAEYGEIKNIHLNLDRRTG-----YLKGYTLVEYETYKEAQAAMEGLNGQDLM 91 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTS-----SEEEEEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHhccCCeEEEEEEecCCCC-----ceeeEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 3456789999999999999874 899999999999999876532 35789999999999999999999999999
Q ss_pred CeEEEEEeccCC
Q 001928 186 GRPLRACFGTTK 197 (995)
Q Consensus 186 GRvLRASfGTTK 197 (995)
|+.|+|.|+..|
T Consensus 92 g~~l~V~~a~~~ 103 (106)
T 1p27_B 92 GQPISVDWCFVR 103 (106)
T ss_dssp SSBCEEEESEES
T ss_pred CcEEEEEeecCC
Confidence 999999999875
No 11
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.6e-15 Score=128.70 Aligned_cols=83 Identities=18% Similarity=0.326 Sum_probs=74.2
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
..+.|||.|||+.+++++|. ++|++||+|..|.|.+++... .++++|||+|.+.++|.+||+.|||..++|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLE---KLFSAYGPLSELHYPIDSLTK-----KPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR 78 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHH---HHHHTTSCEEEEECCCCTTTC-----CCCSEEEEEESSHHHHHHHHHHTTTEESSSC
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEeEEEEEecCCCC-----CcCeEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 35789999999999999874 899999999999998876332 4678999999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.|+..+-
T Consensus 79 ~l~V~~a~~~~ 89 (99)
T 1whw_A 79 MLHVLPSTIKK 89 (99)
T ss_dssp EEEEEECCCCS
T ss_pred EEEEEEcCCCc
Confidence 99999998864
No 12
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.57 E-value=2.7e-15 Score=134.29 Aligned_cols=81 Identities=14% Similarity=0.294 Sum_probs=71.3
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCc--eEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCC--
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGK--VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI-- 183 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGK--IiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~-- 183 (995)
..|+|||.|||+.+++|+|. ++|++||+ |.+|.|.+++.+. .++|+|||+|.+.++|.+||+.|||..
T Consensus 8 ~m~tlfV~nL~~~~tee~L~---~~F~~~G~i~v~~v~i~~d~~tg-----~srG~aFV~f~~~~~A~~Ai~~lng~~~~ 79 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIM---TALSPYASLAVNNIRLIKDKQTQ-----QNRGFAFVQLSSAMDASQLLQILQSLHPP 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHSTTTCCCCGGGEECCCCSSSS-----SCSSEEEEECSSSHHHHHHHHHHHSSSSC
T ss_pred ccCEEEEeCCCCcCCHHHHH---HHHHhhCCccEEEEEEEecCCCC-----CCceEeEEEECCHHHHHHHHHHhcCCCCC
Confidence 36899999999999999975 89999996 6789998887542 468999999999999999999999974
Q ss_pred --CCCeEEEEEeccC
Q 001928 184 --LDGRPLRACFGTT 196 (995)
Q Consensus 184 --LdGRvLRASfGTT 196 (995)
++||.|+|+|+..
T Consensus 80 ~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 80 LKIDGKTIGVDFAKS 94 (95)
T ss_dssp EEETTEEEEEEECCC
T ss_pred ceECCEEEEEEEccC
Confidence 8999999999864
No 13
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=6.6e-15 Score=126.85 Aligned_cols=82 Identities=28% Similarity=0.553 Sum_probs=72.6
Q ss_pred cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 106 VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
......|||.|||+.+++++|. ++|++||+|..|.|.+++.+. .++++|||+|.+.++|.+||+.|||..++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLY---RIFSKYGKVVKVTIMKDKDTR-----KSKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHH---HHTTTTSCEEEEEECCCSSSC-----CCTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred CCCCCEEEEECCCCCCCHHHHH---HHHHhcCCeEEEEEEeCCCCC-----CcccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 3456789999999999999974 899999999999998876532 35789999999999999999999999999
Q ss_pred CeEEEEEecc
Q 001928 186 GRPLRACFGT 195 (995)
Q Consensus 186 GRvLRASfGT 195 (995)
||.|+|.|+.
T Consensus 85 g~~l~v~~ak 94 (94)
T 2e5h_A 85 GRVIKASIAI 94 (94)
T ss_dssp TEEEEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999973
No 14
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.57 E-value=6.3e-15 Score=128.33 Aligned_cols=81 Identities=15% Similarity=0.391 Sum_probs=72.9
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001928 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
..|||+|||..+++++|. ++|++||+|.+|.|.+++.+. .++|+|||+|.+.++|.+||+.|||..++||.|
T Consensus 3 ~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 74 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQIL---DLCSNVGPVINLKMMFDPQTG-----RSKGYAFIEFRDLESSASAVRNLNGYQLGSRFL 74 (96)
T ss_dssp SEEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCBCTTTC-----CBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred cEEEEECCCCCCCHHHHH---HHHHhcCCEEEEEEEeCCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 579999999999999874 899999999999998876432 357899999999999999999999999999999
Q ss_pred EEEeccCCc
Q 001928 190 RACFGTTKY 198 (995)
Q Consensus 190 RASfGTTKY 198 (995)
+|.|+..+-
T Consensus 75 ~V~~a~~~~ 83 (96)
T 2x1f_A 75 KCGYSSNSD 83 (96)
T ss_dssp EEEECSCSS
T ss_pred EEEEcCCCC
Confidence 999998764
No 15
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=127.46 Aligned_cols=83 Identities=17% Similarity=0.382 Sum_probs=74.2
Q ss_pred cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 106 VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
-+..+.|||.|||+.+++++|. ++|++||+|..|.|.+++.+ .++++|||+|.+.++|.+||..|||..++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~g------~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 84 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELE---EICKAHGTVKDLRLVTNRAG------KPKGLAYVEYENESQASQAVMKMDGMTIK 84 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEEECTTS------CEEEEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhCCCeEEEEEEECCCC------CEEeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3456789999999999999974 89999999999999987633 35789999999999999999999999999
Q ss_pred CeEEEEEeccCC
Q 001928 186 GRPLRACFGTTK 197 (995)
Q Consensus 186 GRvLRASfGTTK 197 (995)
|+.|+|.|+..+
T Consensus 85 g~~l~v~~a~~~ 96 (100)
T 2do4_A 85 ENIIKVAISNSG 96 (100)
T ss_dssp SCEEEEEECCCC
T ss_pred CEEEEEEECCCC
Confidence 999999998765
No 16
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.7e-15 Score=127.17 Aligned_cols=81 Identities=23% Similarity=0.390 Sum_probs=72.4
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++||+|.+|.|.+++.+. .++++|||+|.+.++|.+||+.|||..++||
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLR---EVFSKYGPIADVSIVYDQQSR-----RSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHH---HHHHTTSCEEEEEEEECSSSS-----SEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHHhcCCeeEEEEEEcCCCC-----CcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 35679999999999999874 899999999999999876532 3578999999999999999999999999999
Q ss_pred EEEEEeccC
Q 001928 188 PLRACFGTT 196 (995)
Q Consensus 188 vLRASfGTT 196 (995)
.|+|.|+++
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999999875
No 17
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.57 E-value=1.5e-15 Score=134.56 Aligned_cols=80 Identities=19% Similarity=0.284 Sum_probs=71.6
Q ss_pred CCEEEEeCCCC------CCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC
Q 001928 109 RNLVYIIGLPI------NLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY 182 (995)
Q Consensus 109 KNLVYVvGLP~------~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~ 182 (995)
.++|||+|||+ .+.+++|. ++|++||+|.+|.|.+++.+. .++|+|||+|.+.++|.+||+.|||.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~---~~F~~~G~i~~v~i~~d~~tg-----~~kG~afV~f~~~~~A~~Ai~~lng~ 77 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALT---SLFSKAGKVVNMEFPIDEATG-----KTKGFLFVECGSMNDAKKIIKSFHGK 77 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHH---HHHHTTSCEEEEECCEETTTT-----EECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHH---HHHHhcCCEeEEEEEEcCCCC-----ccceEEEEEECCHHHHHHHHHHhCCc
Confidence 57899999999 88777764 899999999999999887532 35789999999999999999999999
Q ss_pred CCCC-eEEEEEeccC
Q 001928 183 ILDG-RPLRACFGTT 196 (995)
Q Consensus 183 ~LdG-RvLRASfGTT 196 (995)
.++| |.|+|.+++.
T Consensus 78 ~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 78 RLDLKHRLFLYTMKD 92 (100)
T ss_dssp BSSSSCBCEEEESHH
T ss_pred ccCCCeEEEEEECch
Confidence 9999 9999999875
No 18
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.57 E-value=4.6e-15 Score=125.75 Aligned_cols=83 Identities=18% Similarity=0.318 Sum_probs=72.7
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
+...|||+|||+.+++++|. ++|++||+|..|.|.++.... ...+++|||+|.+.++|.+||..|||..++|+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~i~~~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIM---EIFSTYGKIKMIDMPVERMHP----HLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ 75 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHH---HHHHTTSCEEEEECCEETTEE----EEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEeCCCCC----CCCCcEEEEEEecHHHHHHHHHHcCCCeECCe
Confidence 45789999999999999874 899999999999998776432 11468999999999999999999999999999
Q ss_pred EEEEEeccCC
Q 001928 188 PLRACFGTTK 197 (995)
Q Consensus 188 vLRASfGTTK 197 (995)
.|+|.++..+
T Consensus 76 ~l~v~~a~~~ 85 (88)
T 4a8x_A 76 EITATAVLAP 85 (88)
T ss_dssp ECEEEEECCC
T ss_pred EEEEEECCCC
Confidence 9999998753
No 19
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.8e-15 Score=128.95 Aligned_cols=83 Identities=19% Similarity=0.378 Sum_probs=74.0
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++||+|..|.|.+++... .++++|||+|.+.++|.+||..|||..++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQ---ELFRPFGSISRIYLAKDKTTG-----QSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHH---TTSTTTCCEEEEEEEECSSSC-----SEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhCCCeEEEEEeecCCCC-----ceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 35779999999999998874 899999999999999876432 3578999999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.|+..+-
T Consensus 86 ~l~v~~a~~~~ 96 (103)
T 2cq0_A 86 ILNVEWAKPST 96 (103)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999998763
No 20
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=126.76 Aligned_cols=83 Identities=20% Similarity=0.366 Sum_probs=73.5
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
..+.|||.|||..+++++|. ++|++||+|.+|.|.+++... .++++|||+|.+.++|.+||. +||..++|+
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 79 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELR---EYFKKFGVVTEVVMIYDAEKQ-----RPRGFGFITFEDEQSVDQAVN-MHFHDIMGK 79 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHH---HHHSSSSCEEEEEECCCTTTC-----SCCSEEEEEESSHHHHHHHHH-HCCCBSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEeCCCCC-----CCCceEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 35789999999999999974 899999999999998876432 367899999999999999999 999999999
Q ss_pred EEEEEeccCCcc
Q 001928 188 PLRACFGTTKYC 199 (995)
Q Consensus 188 vLRASfGTTKYC 199 (995)
.|+|.|+..|--
T Consensus 80 ~l~V~~a~~~~~ 91 (99)
T 2dgs_A 80 KVEVKRAEPRDS 91 (99)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999987643
No 21
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.56 E-value=2.2e-15 Score=130.43 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=67.8
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCC--ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYG--KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYG--KIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
|-+|||+|||+.+++++|. ++|++|| +|.+|.|.+++.+. .++|+|||+|.+.++|.+||+.|||..++|
T Consensus 1 r~~l~V~nL~~~~t~~~l~---~~F~~~G~~~v~~v~i~~~~~~g-----~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g 72 (90)
T 3p5t_L 1 RIALYIGNLTWWTTDEDLT---EAVHSLGVNDILEIKFFENRANG-----QSKGFALVGVGSEASSKKLMDLLPKRELHG 72 (90)
T ss_dssp ---CEEESCCTTCCHHHHH---HHHHTTTCCCCCCEEEEECTTTC-----CEEEEEEECC-CHHHHHHHHHHGGGSCSSS
T ss_pred CeEEEEeCCCCCCCHHHHH---HHHHHhCCCceEEEEEEecCCCC-----ccCcEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 3469999999999998874 8999999 99999999876432 357899999999999999999999999999
Q ss_pred eEEEEEeccCC
Q 001928 187 RPLRACFGTTK 197 (995)
Q Consensus 187 RvLRASfGTTK 197 (995)
|.|+|.++..+
T Consensus 73 r~i~V~~~~~~ 83 (90)
T 3p5t_L 73 QNPVVTPSNKL 83 (90)
T ss_dssp CCCEECCC---
T ss_pred EEEEEEECCCC
Confidence 99999988764
No 22
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.1e-15 Score=129.63 Aligned_cols=85 Identities=18% Similarity=0.343 Sum_probs=75.1
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++||+|.+|.|.+++... .++++|||+|.+.++|.+||+.|||..++|+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLH---AAFIPFGDITDIQIPLDYETE-----KHRGFAFVEFELAEDAAAAIDNMNESELFGR 82 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHH---HHHTTTSCCCCEECCCCSSSC-----CCSSEEEECCSSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHhhccCCEEEEEEEecCCCC-----CcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 46789999999999998874 899999999999998775432 4678999999999999999999999999999
Q ss_pred EEEEEeccCCccc
Q 001928 188 PLRACFGTTKYCH 200 (995)
Q Consensus 188 vLRASfGTTKYCs 200 (995)
.|+|.|+..+--.
T Consensus 83 ~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 83 TIRVNLAKPMRIK 95 (102)
T ss_dssp EEEEEECCCCCCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999999886543
No 23
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.56 E-value=9.6e-15 Score=130.68 Aligned_cols=83 Identities=19% Similarity=0.342 Sum_probs=73.9
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++||+|..|.|.+++... .++++|||+|.+.++|.+||+.|||..++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIK---AAFAPFGRISDARVVKDMATG-----KSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEEcCCCC-----CcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 35679999999999999974 899999999999999876432 3578999999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.|+..|-
T Consensus 86 ~l~V~~a~~~~ 96 (115)
T 2dgo_A 86 QIRTNWATRKP 96 (115)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEEccCCC
Confidence 99999998763
No 24
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8e-15 Score=128.96 Aligned_cols=85 Identities=22% Similarity=0.328 Sum_probs=75.4
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++||+|.+|.|.+++... .++++|||+|.+.++|.+||..|||..++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLW---ELFLQAGPVVNTHMPKDRVTG-----QHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHH---HHHHTTSCEEEEECCBCSSSC-----SBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----cCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 35789999999999998874 899999999999998876432 3578999999999999999999999999999
Q ss_pred EEEEEeccCCccc
Q 001928 188 PLRACFGTTKYCH 200 (995)
Q Consensus 188 vLRASfGTTKYCs 200 (995)
.|+|.|+..+-..
T Consensus 86 ~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 86 PIRVNKASAHNKN 98 (105)
T ss_dssp BCEEEETTTTSCC
T ss_pred EEEEEECCCCCcC
Confidence 9999999887654
No 25
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.56 E-value=8.9e-15 Score=128.03 Aligned_cols=79 Identities=19% Similarity=0.354 Sum_probs=71.0
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEE--------EEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLK--------VSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 180 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiK--------IvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLN 180 (995)
...|||+|||+.+++++|. ++|++||.|.. |.|.+++.+. ..+|+|||+|.+.++|.+||+.||
T Consensus 13 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVA---DYFKQIGIIKTNKKTGQPMINLYTDRETG-----KLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSEEEEECCCSSCCHHHHH---HHHTTTSCBCEETTTTEESEEEEECTTTC-----SEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHHhCCEeeccccccccEEEEecCCCC-----CeeeEEEEEECCHHHHHHHHHHhC
Confidence 5779999999999999874 89999999999 9998876432 357899999999999999999999
Q ss_pred CCCCCCeEEEEEecc
Q 001928 181 SYILDGRPLRACFGT 195 (995)
Q Consensus 181 G~~LdGRvLRASfGT 195 (995)
|..++||.|+|.|++
T Consensus 85 g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 85 GKEFSGNPIKVSFAT 99 (99)
T ss_dssp TCBSSSSBCEEEECC
T ss_pred CCEeCCcEEEEEecC
Confidence 999999999999975
No 26
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.55 E-value=8.4e-15 Score=126.41 Aligned_cols=80 Identities=21% Similarity=0.341 Sum_probs=72.1
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++||+|.+|.|.+++.+ .++++|||+|.+.++|.+||+.|||..++||
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~---~~F~~~G~i~~v~i~~~~~g------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILY---ELFLQAGPLTKVTICKDREG------KPKSFGFVCFKHPESVSYAIALLNGIRLYGR 85 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTS------CEEEEEEEEESSTHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHHhcCCEEEEEEEECCCC------CCceEEEEEECCHHHHHHHHHHhCCCEECCC
Confidence 35689999999999998874 89999999999999987653 3578999999999999999999999999999
Q ss_pred EEEEEeccC
Q 001928 188 PLRACFGTT 196 (995)
Q Consensus 188 vLRASfGTT 196 (995)
.|+|.|+++
T Consensus 86 ~l~V~~a~~ 94 (95)
T 2ywk_A 86 PINVSGPSS 94 (95)
T ss_dssp ECEEECCCC
T ss_pred EEEEEEcCC
Confidence 999999864
No 27
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.9e-15 Score=128.40 Aligned_cols=83 Identities=18% Similarity=0.383 Sum_probs=74.1
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++||+|.+|.|.+++... .++++|||+|.+.++|.+||+.|||..++|+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLE---QVFSKYGQISEVVVVKDRETQ-----RSRGFGFVTFENIDDAKDAMMAMNGKSVDGR 82 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHH---HHHHHHSCCCEEEECCCSSSC-----SCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHHhcCCeEEEEEEeCCCCC-----CcccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 35789999999999999974 899999999999998876432 3678999999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.|+..+.
T Consensus 83 ~l~v~~a~~~~ 93 (102)
T 1x5s_A 83 QIRVDQAGKSS 93 (102)
T ss_dssp CCEEEEEECCC
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 28
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.55 E-value=1.5e-14 Score=127.19 Aligned_cols=81 Identities=20% Similarity=0.374 Sum_probs=73.1
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC--
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG-- 186 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG-- 186 (995)
...|||+|||+.+++++|. ++|++||+|..|.|.++..+ .++++|||+|.+.++|.+||+.|||..+.|
T Consensus 15 ~~~l~v~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~g------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~ 85 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVL---RLFQPFGVIDECTVLRGPDG------SSKGCAFVKFSSHTEAQAAIHALHGSQTMPGA 85 (105)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEEECSSS------CEEEEEEEEESSHHHHHHHHHHHSSCCCCTTC
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCC------CcCcEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 6789999999999998874 89999999999999987643 357899999999999999999999999998
Q ss_pred -eEEEEEeccCCc
Q 001928 187 -RPLRACFGTTKY 198 (995)
Q Consensus 187 -RvLRASfGTTKY 198 (995)
+.|+|.|+..+-
T Consensus 86 ~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 86 SSSLVVKFADTDK 98 (105)
T ss_dssp SSCCEEEESCSSC
T ss_pred CccEEEEECccCc
Confidence 999999998763
No 29
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=126.57 Aligned_cols=82 Identities=26% Similarity=0.483 Sum_probs=73.7
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||.|||+.+++++|. ++|++||+|.+|.|.++..+ ++++|||+|.+.++|.+||..|||..++|+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLR---QMFGQFGKILDVEIIFNERG-------SKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHGGGTSCEEEEEEECCTTT-------TCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCC-------CcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 5779999999999999874 89999999999999877532 4789999999999999999999999999999
Q ss_pred EEEEeccCCccc
Q 001928 189 LRACFGTTKYCH 200 (995)
Q Consensus 189 LRASfGTTKYCs 200 (995)
|+|.|+..+--.
T Consensus 85 l~v~~a~~~~~~ 96 (103)
T 2cq3_A 85 IEVNNATARVMT 96 (103)
T ss_dssp CEEEECCSSCCC
T ss_pred EEEEEcccCCCC
Confidence 999999887544
No 30
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=127.40 Aligned_cols=81 Identities=19% Similarity=0.368 Sum_probs=73.0
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
+...|||.|||+.+++++|. ++|++||+|..|.|.++ .+ ..+++|||+|.+.++|.+||..|||..++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~-~g------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLR---KAFSPFGTITSAKVMME-GG------RSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHH---HTTTTTSCEEEEEEEEC-SS------SEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEcC-CC------CcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 46679999999999999974 89999999999999987 32 2578999999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.|+..|-
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2d9p_A 84 PLYVALAQRKE 94 (103)
T ss_dssp BCEEEECSSCC
T ss_pred EEEEEEecccc
Confidence 99999998764
No 31
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.3e-15 Score=127.44 Aligned_cols=82 Identities=20% Similarity=0.364 Sum_probs=72.9
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEE-EEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKV-SISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKI-vInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
...|||.|||+.+++++|. ++|++||+|.+| .|.+++... .++++|||+|.+.++|.+||..|||..++|+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLY---DTFSAFGVILQTPKIMRDPDTG-----NSKGYAFINFASFDASDAAIEAMNGQYLCNR 76 (96)
T ss_dssp CCEEEEECCCTTCCHHHHH---HHHHTTSCBSSCCEECCCTTTC-----SCCSEEEEEBSSHHHHHHHHHTTTTCEETTE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEEEcCCCC-----CcCeEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4679999999999998874 899999999999 888775432 3678999999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.|+..+-
T Consensus 77 ~l~v~~a~~~~ 87 (96)
T 1x5t_A 77 PITVSYAFKKD 87 (96)
T ss_dssp ECEEEESCCCC
T ss_pred EEEEEEecccC
Confidence 99999998764
No 32
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=127.62 Aligned_cols=81 Identities=17% Similarity=0.314 Sum_probs=72.6
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.+ .+++|||+|.+.++|.+||..|||..++||
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLIL---QLFSQIGPCKSCKMITEHTS-------NDPYCFVEFYEHRDAAAALAAMNGRKILGK 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHHHHHSCEEEEEEECCCCS-------SCCEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCccCCHHHHH---HHHHhcCCEeEEEEEecCCC-------CCCEEEEEECCHHHHHHHHHHhCCCCcCCC
Confidence 35789999999999998874 89999999999999987532 368999999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.|+..+-
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2cqi_A 84 EVKVNWATTPS 94 (103)
T ss_dssp EEEEEECCCTT
T ss_pred eEEEEECCCCc
Confidence 99999998753
No 33
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.4e-14 Score=127.57 Aligned_cols=82 Identities=16% Similarity=0.369 Sum_probs=72.9
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeec-CCCCcccCCCCCcEEEEEeCCHHHHHHHHHHh-CCCCCC
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRT-ATGDIQHSANNSCCVYITYSREDDAIRCIQSV-HSYILD 185 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd-~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaL-NG~~Ld 185 (995)
....|||+|||+.+++++|. ++|++||+|..|.|.++ +... .++++|||+|.+.++|.+||..| ||..++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIR---ELFSTFGELKTVRLPKKMTGTG-----AHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCCCCSSSC-----SSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CCCEEEEeCCCCcCCHHHHH---HHHHccCCeEEEEEecCCCCCC-----CcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 45779999999999999874 89999999999999877 3321 35789999999999999999999 999999
Q ss_pred CeEEEEEeccCC
Q 001928 186 GRPLRACFGTTK 197 (995)
Q Consensus 186 GRvLRASfGTTK 197 (995)
|+.|+|.|+..+
T Consensus 86 g~~l~v~~a~~~ 97 (107)
T 2cph_A 86 GRRLVLEWADSE 97 (107)
T ss_dssp SCBCEEEECCCC
T ss_pred CCEEEEEeCCCC
Confidence 999999999875
No 34
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.54 E-value=1.5e-14 Score=127.63 Aligned_cols=79 Identities=22% Similarity=0.458 Sum_probs=71.7
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||.|||+.+++++|. ++|++||+|..|.|.++..+ .++++|||+|.+.++|.+||..|||..++|+.
T Consensus 29 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~g------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQ---ELFAEFGTLKKAAVHYDRSG------RSLGTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp SEEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEECTTS------CEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCC------CcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 5779999999999999874 89999999999999987743 35789999999999999999999999999999
Q ss_pred EEEEeccC
Q 001928 189 LRACFGTT 196 (995)
Q Consensus 189 LRASfGTT 196 (995)
|+|.|++.
T Consensus 100 l~V~~a~s 107 (107)
T 3ulh_A 100 MNIQLVTS 107 (107)
T ss_dssp CEEEEECC
T ss_pred EEEEEeCC
Confidence 99999873
No 35
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=128.26 Aligned_cols=84 Identities=21% Similarity=0.430 Sum_probs=74.6
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC------C
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH------S 181 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLN------G 181 (995)
....|||.|||+.+++++|. ++|++||+|..|.|.+++.+. .++++|||+|.+.++|.+||..+| |
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALG---EVLQQFGDLKYVRVVLHPDTE-----HSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCBCSSSC-----CBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----CCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 46679999999999998874 899999999999998876532 357899999999999999999999 9
Q ss_pred CCCCCeEEEEEeccCCcc
Q 001928 182 YILDGRPLRACFGTTKYC 199 (995)
Q Consensus 182 ~~LdGRvLRASfGTTKYC 199 (995)
..++|+.|+|.|+..|--
T Consensus 86 ~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 86 LKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp EESSSCEEEEECCCCCCC
T ss_pred cEEcCEEEEEEECCCCcc
Confidence 999999999999988643
No 36
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.54 E-value=1.3e-14 Score=129.00 Aligned_cols=84 Identities=10% Similarity=0.284 Sum_probs=74.2
Q ss_pred cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 106 VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
......|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .++++|||+|.+.++|.+||..|||..++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 94 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQ---EKFCDYGEIKNIHLNLDRRTG-----FSKGYALVEYETHKQALAAKEALNGAEIM 94 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHH---HHHGGGSCEEEEECCBCTTTS-----SBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCC-----CcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3456789999999999998874 899999999999998775432 35789999999999999999999999999
Q ss_pred CeEEEEEeccCC
Q 001928 186 GRPLRACFGTTK 197 (995)
Q Consensus 186 GRvLRASfGTTK 197 (995)
|+.|+|.|+..|
T Consensus 95 g~~l~V~~a~~~ 106 (110)
T 1oo0_B 95 GQTIQVDWCFVK 106 (110)
T ss_dssp TEECEEEESEES
T ss_pred CcEEEEEEcccC
Confidence 999999998765
No 37
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=9.6e-15 Score=128.38 Aligned_cols=83 Identities=20% Similarity=0.263 Sum_probs=73.8
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++||+|.+|.|.++..+. .++++|||+|.+.++|.+||..|||..++|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLR---RVFEKYGRVGDVYIPREPHTK-----APRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEECCBCSSSC-----SBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred CCeEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEeCCCCC-----CCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 45789999999999999974 899999999999998876432 3578999999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.|+..+-
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dnm_A 84 ELRVQVARYGR 94 (103)
T ss_dssp CCEEEECSSCC
T ss_pred EEEEEECCcCC
Confidence 99999998753
No 38
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=1e-14 Score=136.97 Aligned_cols=83 Identities=20% Similarity=0.379 Sum_probs=71.4
Q ss_pred CCEEEEeCCCCCCChHHHHH-hHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 109 RNLVYIIGLPINLADEDLLQ-RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLR-k~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
.+.|||+|||+.+.+++|-+ -+++|++||+|++|.|.++. .++|+|||+|.+.++|.+||..|||..++||
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~--------~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSD--------DNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCC--------SSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCC--------CcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 57899999999998887521 14899999999999986532 2578999999999999999999999999999
Q ss_pred EEEEEeccCCcc
Q 001928 188 PLRACFGTTKYC 199 (995)
Q Consensus 188 vLRASfGTTKYC 199 (995)
.|+|.|+..+--
T Consensus 101 ~l~V~~a~~~~~ 112 (127)
T 2a3j_A 101 PLVITFSETPQS 112 (127)
T ss_dssp CCEEEECCCCCH
T ss_pred EEEEEEccCcch
Confidence 999999988654
No 39
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.54 E-value=1.3e-14 Score=123.52 Aligned_cols=82 Identities=17% Similarity=0.283 Sum_probs=72.7
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++||+|.+|.|.+++... .++++|||+|.+.++|.+|| .+||..++||
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~ 75 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELE---AHFHGCGSVNRVTILCDKFSG-----HPKGFAYIEFSDKESVRTSL-ALDESLFRGR 75 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHH---HHHGGGCCEEEEEEEESCSSS-----SCCEEEEEEESSTHHHHHHG-GGTTCEETTE
T ss_pred cCCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEecCCCC-----CcceEEEEEECCHHHHHHHH-hcCCCEECCc
Confidence 35689999999999998874 899999999999999876432 36789999999999999999 9999999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.++.++.
T Consensus 76 ~l~V~~a~~~~ 86 (89)
T 3ucg_A 76 QIKVIPKRTNR 86 (89)
T ss_dssp ECEEEETTTTS
T ss_pred EEEEEEccCCC
Confidence 99999998753
No 40
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=127.69 Aligned_cols=81 Identities=22% Similarity=0.299 Sum_probs=70.8
Q ss_pred CCEEEEeCCCCCCChHHHHH-hHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 109 RNLVYIIGLPINLADEDLLQ-RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLR-k~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
...|||+|||+.+++++|.+ -+++|++||+|.+|.|.+++.+ +++|||+|.+.++|.+||..|||..++||
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--------rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--------QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--------TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--------CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 46799999999999988721 0389999999999999877542 56899999999999999999999999999
Q ss_pred EEEEEeccCC
Q 001928 188 PLRACFGTTK 197 (995)
Q Consensus 188 vLRASfGTTK 197 (995)
.|+|.|+..+
T Consensus 81 ~l~V~~a~~~ 90 (96)
T 2dgx_A 81 KILVSLATGA 90 (96)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEEcCCC
Confidence 9999999764
No 41
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.54 E-value=1.2e-14 Score=130.33 Aligned_cols=83 Identities=22% Similarity=0.426 Sum_probs=73.9
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++||+|..|.|.+++... .++++|||+|.+.++|.+||+.|||..++||
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 95 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLL---QMFMPFGNVVSAKVFIDKQTN-----LSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK 95 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHH---HHHGGGSCCSEEEEEECSSSC-----SEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCCC-----CcCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 35679999999999998874 899999999999999876432 3578999999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.|+..|-
T Consensus 96 ~l~V~~a~~~~ 106 (115)
T 2cpz_A 96 RLKVQLKRSKN 106 (115)
T ss_dssp ECEEECCCCSC
T ss_pred EEEEEEcCCCC
Confidence 99999998764
No 42
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=126.40 Aligned_cols=85 Identities=15% Similarity=0.284 Sum_probs=72.8
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||.|||+.+++++|. ++|++||+|..|.|.++.... .+..++++|||+|.+.++|.+||..|||..++|+.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~--gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLK---GVFSKVGAIKSCTISKKKNKA--GVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK 79 (98)
T ss_dssp CCCEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEEEECTT--CCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC--CCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 4679999999999998874 899999999999998765410 01125789999999999999999999999999999
Q ss_pred EEEEeccCCc
Q 001928 189 LRACFGTTKY 198 (995)
Q Consensus 189 LRASfGTTKY 198 (995)
|+|.|+..+-
T Consensus 80 l~V~~a~~~~ 89 (98)
T 2cpf_A 80 LEVRISERAT 89 (98)
T ss_dssp CEEECSSCSS
T ss_pred EEEEEccCCC
Confidence 9999998753
No 43
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.3e-14 Score=130.42 Aligned_cols=80 Identities=26% Similarity=0.500 Sum_probs=72.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||..+++++|. ++|++||+|..|.|.++..+ ++|+|||+|.+.++|.+||..|||..++||.
T Consensus 29 ~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~-------~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLR---QMFGQFGKILDVEIIFNERG-------SKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHGGGTCCCSCEEECCBTTB-------CTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEECCCCcCCHHHHH---HHHHhcCCEEEEEEEECCCC-------CceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 5679999999999999874 89999999999999877531 5789999999999999999999999999999
Q ss_pred EEEEeccCCc
Q 001928 189 LRACFGTTKY 198 (995)
Q Consensus 189 LRASfGTTKY 198 (995)
|+|.|+..|.
T Consensus 99 l~V~~a~~~~ 108 (109)
T 2err_A 99 IEVNNATARV 108 (109)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCc
Confidence 9999998763
No 44
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8.9e-15 Score=128.17 Aligned_cols=85 Identities=15% Similarity=0.310 Sum_probs=75.1
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||+.+++++|. ++|++||+|..|.|.+++... .++++|||+|.+.++|.+||+.+||..++|+.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~---~~f~~~G~i~~~~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLK---DIFSEVGPVVSFRLVYDRETG-----KPKGYGFCEYQDQETALSAMRNLNGREFSGRA 79 (104)
T ss_dssp HSCEEEESCCTTSCHHHHH---HHHHTTSCCSEEEEEEETTTT-----EEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred ccEEEEeCCCCcCCHHHHH---HHHHhcCCeeEEEEEeCCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 4579999999999999974 899999999999999876432 35789999999999999999999999999999
Q ss_pred EEEEeccCCcccc
Q 001928 189 LRACFGTTKYCHA 201 (995)
Q Consensus 189 LRASfGTTKYCs~ 201 (995)
|+|.|+..+.-..
T Consensus 80 l~v~~a~~~~~~~ 92 (104)
T 1p1t_A 80 LRVDNAASEKNKE 92 (104)
T ss_dssp BEEEETTCTTHHH
T ss_pred EEEEeCCCccchh
Confidence 9999998876544
No 45
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.53 E-value=2.5e-14 Score=130.16 Aligned_cols=86 Identities=19% Similarity=0.378 Sum_probs=76.6
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
-..+.|||+|||+.+++++|. ++|++||+|..|.|.++..+ ..+++|||+|.+.++|.+||..+||..++|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~g------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 103 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQ---ELFAEFGTLKKAAVDYDRSG------RSLGTADVHFERRADALKAMKQYKGVPLDG 103 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHH---HHHHTTSCCSEEEEECCSSS------SCCSEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEECCCC------CEeeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 446789999999999999874 89999999999999887633 357899999999999999999999999999
Q ss_pred eEEEEEeccCCcccc
Q 001928 187 RPLRACFGTTKYCHA 201 (995)
Q Consensus 187 RvLRASfGTTKYCs~ 201 (995)
+.|+|.|++.+.+..
T Consensus 104 ~~l~V~~a~~~~~~~ 118 (124)
T 2kt5_A 104 RPMDIQLVASQIDLE 118 (124)
T ss_dssp CEEEEEEECCTTCCC
T ss_pred cEEEEEEeCCCCCCC
Confidence 999999999877653
No 46
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.8e-14 Score=128.49 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=74.4
Q ss_pred cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceE--------EEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHH
Q 001928 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL--------KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQ 177 (995)
Q Consensus 106 VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIi--------KIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIq 177 (995)
-.....|||.|||+.+++++|. ++|++||.|. +|.|.+++... .++++|||+|.+.++|.+||.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~Ai~ 83 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLA---DFFKQCGVVKMNKRTGQPMIHIYLDKETG-----KPKGDATVSYEDPPTAKAAVE 83 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHH---HHHTTTSCBCBCSSSCCBSEECCBCTTTC-----SBCSEEEEEBSSHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCCCCHHHHH---HHHHhcCCEeEccccCccCEEEEEeCCCC-----CeeeEEEEEECCHHHHHHHHH
Confidence 3456789999999999999874 8999999999 68888775432 357899999999999999999
Q ss_pred HhCCCCCCCeEEEEEeccCCc
Q 001928 178 SVHSYILDGRPLRACFGTTKY 198 (995)
Q Consensus 178 aLNG~~LdGRvLRASfGTTKY 198 (995)
.|||..++||.|+|.|+..+-
T Consensus 84 ~l~g~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 84 WFDGKDFQGSKLKVSLARKKP 104 (113)
T ss_dssp HHTTCEETTEECEEECSSCCC
T ss_pred HcCCCccCCCEEEEEECCCCC
Confidence 999999999999999998763
No 47
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.53 E-value=1.9e-14 Score=129.64 Aligned_cols=81 Identities=19% Similarity=0.399 Sum_probs=72.8
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .++|+|||+|.+.++|.+||+.+||..++||.
T Consensus 26 ~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLR---GIFEPFGRIESIQLMMDSETG-----RSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp CEEEEEECCCSSCCHHHHH---HHHTTTSCEEEEEEEEETTTT-----EEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEEcCCCC-----ccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 4679999999999998874 899999999999999876432 35789999999999999999999999999999
Q ss_pred EEEEeccCC
Q 001928 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|+|.|++.|
T Consensus 98 l~V~~a~~k 106 (108)
T 2jrs_A 98 MKVGHVTER 106 (108)
T ss_dssp CEEECSCSS
T ss_pred EEEEEcccC
Confidence 999999876
No 48
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.52 E-value=8.9e-15 Score=126.25 Aligned_cols=80 Identities=9% Similarity=0.233 Sum_probs=70.0
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
.+.|||.|||+.+++++|. ++|++||+|.++++.+++... .++++|||+|.+.++|.+||+.|||..++||.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~~~~~~~~g-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEIL---DFFYGYQVIPGSVCLKYNEKG-----MPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp CEEEEEECCCTTCCHHHHH---HHTTTSCBCTTCCEEEECTTS-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCccceEEEEeCCCC-----CEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 3679999999999999974 899999999988887665432 35789999999999999999999999999999
Q ss_pred EEEEeccC
Q 001928 189 LRACFGTT 196 (995)
Q Consensus 189 LRASfGTT 196 (995)
|+|.+++.
T Consensus 87 l~v~~a~s 94 (95)
T 2ek1_A 87 VKLSGPSS 94 (95)
T ss_dssp CEEECCC-
T ss_pred EEEEeccC
Confidence 99998764
No 49
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=130.30 Aligned_cols=80 Identities=19% Similarity=0.319 Sum_probs=72.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||+.+++++|. ++|++||+|.+|.|.++..+ ..+++|||+|.+.++|.+||+.|||..++|+.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~g------~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLK---AVFGKHGPISEVLLIKDRTS------KSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp CCEEEEECCTTTCCHHHHH---HHHHTSSCCSEEEEECSTTT------TCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEECCCC------CcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 5689999999999999874 89999999999999987633 35789999999999999999999999999999
Q ss_pred EEEEeccCC
Q 001928 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|+|.|+..+
T Consensus 78 l~V~~a~~~ 86 (116)
T 2fy1_A 78 IKVEQAKKP 86 (116)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998764
No 50
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.52 E-value=1.6e-14 Score=127.22 Aligned_cols=83 Identities=19% Similarity=0.431 Sum_probs=73.4
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC---
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL--- 184 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L--- 184 (995)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++.+. .++++|||+|.+.++|.+||..|||..+
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 83 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLK---PLFEEFGKIYELTVLKDRFTG-----MHKGCAFLTYCERESALKAQSALHEQKTLPG 83 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHH---HHHHHHSCCCEEECCCCSSSC-----SCCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEecCCCC-----CcceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 35679999999999998874 899999999999998876532 3678999999999999999999999988
Q ss_pred CCeEEEEEeccCCc
Q 001928 185 DGRPLRACFGTTKY 198 (995)
Q Consensus 185 dGRvLRASfGTTKY 198 (995)
+|+.|+|.|+..+.
T Consensus 84 ~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 84 MNRPIQVKPADSES 97 (106)
T ss_dssp CSSCCEEEECCCCS
T ss_pred CCceEEEEECCccc
Confidence 89999999998764
No 51
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.52 E-value=2.1e-14 Score=130.37 Aligned_cols=84 Identities=13% Similarity=0.322 Sum_probs=73.9
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
.....|||.|||+.+++++|. ++|++||+|..|.|.++.... .++++|||+|.+.++|.+||..|||..++|
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 91 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIH---DKFAEYGEIKNIHLNLDRRTG-----YLKGYTLVEYETYKEAQAAMEGLNGQDLMG 91 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCBCTTTS-----SBCSCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 346789999999999988874 899999999999998776432 357899999999999999999999999999
Q ss_pred eEEEEEeccCCc
Q 001928 187 RPLRACFGTTKY 198 (995)
Q Consensus 187 RvLRASfGTTKY 198 (995)
+.|+|.|+..+-
T Consensus 92 ~~l~v~~a~~~~ 103 (126)
T 3ex7_B 92 QPISVDWCFVRG 103 (126)
T ss_dssp SBCEEEESEESS
T ss_pred eEEEEEEecCCC
Confidence 999999997653
No 52
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.1e-14 Score=123.69 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=70.9
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .++++|||+|.+.++|.+||+.|||..++||.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLV---KLCQPYGKIVSTKAILDKTTN-----KCKGYGFVDFDSPSAAQKAVTALKASGVQAQM 76 (85)
T ss_dssp CCEEEEESCCTTCCHHHHH---TTSTTTSCEEEEEEECCSSSC-----SCCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----CcCcEEEEEECCHHHHHHHHHHhcCCeEeeEE
Confidence 4679999999999999874 899999999999998876432 36789999999999999999999999999999
Q ss_pred EEEEeccC
Q 001928 189 LRACFGTT 196 (995)
Q Consensus 189 LRASfGTT 196 (995)
||+++...
T Consensus 77 ~~~~~~~s 84 (85)
T 1x4e_A 77 AKQSGPSS 84 (85)
T ss_dssp CCSSCCCC
T ss_pred EeecCCCC
Confidence 99987653
No 53
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3.7e-14 Score=126.41 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=71.5
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||.|||+.+++++|. ++|++||+|.+|.|.+++.+ .++++|||+|.+.++|.+||+.|||..++|+.
T Consensus 15 ~~~l~V~nlp~~~~~~~l~---~~f~~~G~i~~~~i~~~~~g------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLK---EVFSMAGVVVRADILEDKDG------KSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp CSCEEEESCCTTCCHHHHH---HHHTTTSCEEEEEEEECTTC------SEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCC------CeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 4679999999999998874 89999999999999987643 35789999999999999999999999999999
Q ss_pred EEEEeccC
Q 001928 189 LRACFGTT 196 (995)
Q Consensus 189 LRASfGTT 196 (995)
|+|.|+..
T Consensus 86 l~v~~a~~ 93 (114)
T 2do0_A 86 MHVKMDER 93 (114)
T ss_dssp CEEEECSC
T ss_pred EEEEEccc
Confidence 99999765
No 54
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.52 E-value=1.9e-14 Score=129.26 Aligned_cols=80 Identities=18% Similarity=0.386 Sum_probs=70.9
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||+|||+.+++++|. ++|++||+|.+|.|.+++... ..+++|||+|.+.++|.+||+.|||..++||
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLA---STFLPFGNVISAKVFIDKQTS-----LSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHH---HHTTTSCEEEEEEECCCSSSS-----CCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEeCCCCC-----CcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 35789999999999998874 899999999999998775432 4678999999999999999999999999999
Q ss_pred EEEEEecc
Q 001928 188 PLRACFGT 195 (995)
Q Consensus 188 vLRASfGT 195 (995)
.|+|.|+.
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99999863
No 55
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.51 E-value=2.3e-14 Score=133.55 Aligned_cols=82 Identities=27% Similarity=0.431 Sum_probs=73.6
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||.|||+.+++++|. ++|++||+|..|.|.+++.+. ..+++|||+|.+.++|.+||..|||..++|+.
T Consensus 46 ~~~l~V~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg-----~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTERDLR---EVFSKYGPIADVSIVYDQQSR-----RSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp SSCBCEETCTTSCCHHHHH---HHHTTTSCEEEEEEECCSSSS-----CCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 5679999999999999874 899999999999999876432 46789999999999999999999999999999
Q ss_pred EEEEeccCCc
Q 001928 189 LRACFGTTKY 198 (995)
Q Consensus 189 LRASfGTTKY 198 (995)
|+|.|+..|-
T Consensus 118 l~V~~a~~~~ 127 (129)
T 2kxn_B 118 IRVDFSITKR 127 (129)
T ss_dssp CEESCCSSSS
T ss_pred EEEEEecCCC
Confidence 9999998763
No 56
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.51 E-value=4.1e-14 Score=130.42 Aligned_cols=83 Identities=12% Similarity=0.258 Sum_probs=74.3
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||+|||..+++++|. ++|++||+|.+|.|.+++.+. .++++|||+|.+.++|.+||..|||..++|+
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLR---QLFERYGPIESVKIVCDRETR-----QSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHH---HHHHHHSCEEEEEEEEETTTT-----EEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEEcCCCC-----CcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 35679999999999998874 899999999999999876532 3578999999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.|+..+-
T Consensus 113 ~l~v~~a~~~~ 123 (139)
T 1u6f_A 113 RLKVALAASGH 123 (139)
T ss_dssp EEEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999998864
No 57
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.51 E-value=6.3e-15 Score=126.36 Aligned_cols=84 Identities=19% Similarity=0.280 Sum_probs=69.1
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001928 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
..|||+|||+.+++++|. ++|++||+|.+|.|.+++.+. .++|+|||+|.+.+ |.+||..|||..++||.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVK---ELFSQFGKVFNVKLIYDRETK-----KPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHT---TTHHHHTCCSEEEECCCSSSC-----CCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred cEEEECCCCCCCCHHHHH---HHHHhcCCEEEEEEEEcCCCC-----CcceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence 369999999999999974 899999999999998876432 46889999999999 999999999999999999
Q ss_pred EEEeccCCccccc
Q 001928 190 RACFGTTKYCHAW 202 (995)
Q Consensus 190 RASfGTTKYCs~F 202 (995)
+|.|++.+.+...
T Consensus 73 ~V~~a~~~~~~~~ 85 (90)
T 2ki2_A 73 RVTEANPKKSLEH 85 (90)
T ss_dssp SEEEC--------
T ss_pred EEEEcCCCCCCCC
Confidence 9999999876643
No 58
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.4e-14 Score=126.04 Aligned_cols=81 Identities=10% Similarity=0.283 Sum_probs=70.7
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||.|||+.+++++|. ++|++||.|..+++.+++... .++++|||+|.+.++|.+||+.|||..++||.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~---~~F~~~G~v~~~~~~~~~~~g-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEIL---DFFYGYQVIPGSVCLKYNEKG-----MPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp SEEEEEESCCTTCCHHHHH---HHTTTSCCCTTTCEEEECSSS-----CEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHHcCCccceEEEEECCCC-----CeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 4679999999999999974 899999999987776654322 35789999999999999999999999999999
Q ss_pred EEEEeccCC
Q 001928 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|+|.|++.+
T Consensus 87 l~V~~a~~~ 95 (98)
T 2cqp_A 87 VKLVLGSGP 95 (98)
T ss_dssp CEEEESSCS
T ss_pred EEEEEcCCC
Confidence 999998753
No 59
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.7e-14 Score=126.07 Aligned_cols=81 Identities=19% Similarity=0.361 Sum_probs=71.7
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
.....|||.|||+.+++++|. ++|++||+|..|.|.++. .++++|||+|.+.++|.+||+.|||..++|
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~~~i~~~~--------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 88 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIE---DVFYKYGAIRDIDLKNRR--------GGPPFAFVEFEDPRDAEDAVYGRDGYDYDG 88 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEECCSS--------SSSCCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECC--------CCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 346789999999999998874 899999999999996543 246899999999999999999999999999
Q ss_pred eEEEEEeccCCc
Q 001928 187 RPLRACFGTTKY 198 (995)
Q Consensus 187 RvLRASfGTTKY 198 (995)
+.|+|.|+..+-
T Consensus 89 ~~l~V~~a~~~~ 100 (109)
T 1x4a_A 89 YRLRVEFPRSGR 100 (109)
T ss_dssp EECEEECCCCCC
T ss_pred eEEEEEEcccCC
Confidence 999999998753
No 60
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.51 E-value=3.1e-14 Score=122.19 Aligned_cols=80 Identities=19% Similarity=0.346 Sum_probs=71.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||.|||+.+++++|. ++|++||+|..|.|.++. + .++++|||+|.+.++|.+||+.|||..++|+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~---~~f~~~G~v~~~~i~~~~-g------~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLK---DKFNECGHVLYADIKMEN-G------KSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp CCEEEECSCCTTCCHHHHH---HHHHTTSCEEEEEEEESS-S------CEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEccC-C------CcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 4679999999999998874 899999999999998742 2 35789999999999999999999999999999
Q ss_pred EEEEeccCCc
Q 001928 189 LRACFGTTKY 198 (995)
Q Consensus 189 LRASfGTTKY 198 (995)
|+|.|+..+.
T Consensus 78 l~v~~a~~~~ 87 (92)
T 2dgv_A 78 IDVRIDRNAS 87 (92)
T ss_dssp CCCEECSCCS
T ss_pred EEEEEcCCCC
Confidence 9999987753
No 61
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.9e-14 Score=128.66 Aligned_cols=80 Identities=19% Similarity=0.378 Sum_probs=71.3
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
+...+|||+|||+.+++++|. ++|++||+|..|.|.+++.+ .++|+|||+|.+.++|.+||. +||..++|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~---~~F~~~G~v~~v~i~~d~~g------~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g 78 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIK---EWLEDKGQVLNIQMRRTLHK------AFKGSIFVVFDSIESAKKFVE-TPGQKYKE 78 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHH---HHHHTSSCEEEEEEECCCTT------SCCCEEEEEESSHHHHHHHHT-SSCCCCTT
T ss_pred CCCCEEEEECCCCCCCHHHHH---HHHhhcCCEEEEEEEECCCC------CCccEEEEEECCHHHHHHHHH-cCCCEECC
Confidence 445779999999999998874 89999999999999987653 368999999999999999999 99999999
Q ss_pred eEEEEEeccC
Q 001928 187 RPLRACFGTT 196 (995)
Q Consensus 187 RvLRASfGTT 196 (995)
|.|+|.++..
T Consensus 79 r~l~V~~~~~ 88 (103)
T 1s79_A 79 TDLLILFKDD 88 (103)
T ss_dssp TTCEEEEHHH
T ss_pred EEEEEEEchH
Confidence 9999998654
No 62
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.7e-14 Score=125.63 Aligned_cols=82 Identities=13% Similarity=0.271 Sum_probs=73.1
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceE-EEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL-KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIi-KIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
....|||+|||+.+++++|. ++|++||+|. .|.|.+++... .++++|||+|.+.++|.+||+.|||..++|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFIS---RAFATMGETVMSVKIIRNRLTG-----IPAGYCFVEFADLATAEKCLHKINGKPLPG 79 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHH---HHHHHTTCCCCEEEEEECSSSC-----CEEEEEEEECSCHHHHHHHHHTTTTSEESS
T ss_pred CccEEEEeCCCCCCCHHHHH---HHHHHhCCcceEEEEeecCCCC-----CcCCEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 45789999999999998874 8999999999 99999876432 357899999999999999999999999999
Q ss_pred eE----EEEEeccCC
Q 001928 187 RP----LRACFGTTK 197 (995)
Q Consensus 187 Rv----LRASfGTTK 197 (995)
+. |+|.|++..
T Consensus 80 ~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 80 ATPAKRFKLNYATYS 94 (99)
T ss_dssp CSSCEECCEEETTCC
T ss_pred CCcceeEEEeecCCC
Confidence 99 999998764
No 63
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.2e-14 Score=127.40 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=73.2
Q ss_pred cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 106 VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
......|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .++++|||+|.+.++|.+|| .|||..++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 92 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLE---DFFSAVGKVRDVRIISDRNSR-----RSKGIAYVEFCEIQSVPLAI-GLTGQRLL 92 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHH---HHHTTTSCEEEEEECCSCCSS-----SCCCCEEEEESCGGGHHHHH-HHTTEEET
T ss_pred cCCCCEEEEeCCCCCCCHHHHH---HHHHhCCCEeEEEEEecCCCC-----ccCcEEEEEeCcHHHHHHHH-HcCCCEeC
Confidence 3456789999999999999874 899999999999998776532 35789999999999999999 99999999
Q ss_pred CeEEEEEeccCC
Q 001928 186 GRPLRACFGTTK 197 (995)
Q Consensus 186 GRvLRASfGTTK 197 (995)
|+.|+|.|+..+
T Consensus 93 g~~l~V~~a~~~ 104 (114)
T 2cq4_A 93 GVPIIVQASQAE 104 (114)
T ss_dssp TEEEEEEEHHHH
T ss_pred CeEEEEEecCCC
Confidence 999999998754
No 64
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.50 E-value=3.3e-14 Score=129.97 Aligned_cols=78 Identities=19% Similarity=0.389 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||+.+++++|. ++|++||+|.+|.|.+++.+. .++++|||+|.+.++|.+||+.|||..++||.
T Consensus 63 ~~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 134 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLH---AAFIPFGDITDIQIPLDYETE-----KHRGFAFVEFELAEDAAAAIDNMNESELFGRT 134 (140)
T ss_dssp CCEEEEECCCTTCCHHHHH---HHHGGGSCEEEEECCCCTTTC-----CCCSEEEEEESCHHHHHHHHHHSTEEEETTEE
T ss_pred CcEEEEEeCCCCCCHHHHH---HHHHhcCCEEEEEEeecCCCC-----CcCcEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 6779999999999998874 899999999999998875432 46789999999999999999999999999999
Q ss_pred EEEEec
Q 001928 189 LRACFG 194 (995)
Q Consensus 189 LRASfG 194 (995)
|+|.|+
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999985
No 65
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2.4e-14 Score=131.49 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=68.3
Q ss_pred CCEEEEeCCCCCCChHHHHHh-HhhhcCC-CceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 109 RNLVYIIGLPINLADEDLLQR-KEYFGQY-GKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk-~EyFGQY-GKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
..+|||.|||+++.+++|-++ +++|++| |+|++|. +|+|||+|.+.|+|.+||+.|||+.++|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------------gG~AfV~F~~~esA~~A~~~l~G~~l~g 73 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------------GCSAILRFINQDSAERAQKRMENEDVFG 73 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------------TTCEEEEESSHHHHHHHHHHHTTCCSSS
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------------cCEEEEEECCHHHHHHHHHHhcCCccCC
Confidence 446999999999987775322 7999999 5999992 2689999999999999999999999999
Q ss_pred eEEEEEeccCCcccccc
Q 001928 187 RPLRACFGTTKYCHAWI 203 (995)
Q Consensus 187 RvLRASfGTTKYCs~FL 203 (995)
|.|||+|++++.-....
T Consensus 74 r~i~v~~A~~~sd~~~~ 90 (96)
T 2diu_A 74 NRIIVSFTPKNRELCET 90 (96)
T ss_dssp SCCEEESSCCSCCCCCC
T ss_pred ceEEEEecCCCcceeEe
Confidence 99999999998655433
No 66
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=7e-14 Score=121.96 Aligned_cols=80 Identities=20% Similarity=0.317 Sum_probs=70.7
Q ss_pred cccccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCC
Q 001928 104 VRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 183 (995)
Q Consensus 104 VRVIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~ 183 (995)
-+....+.|||.|||+.+++++|. ++|++||+|.+|.|.++ +++|||+|.+.++|.+||+.|||..
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~v~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~ 77 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALA---REFDRFGSIRTIDHVKG-----------DSFAYIQYESLDAAQAACAKMRGFP 77 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHH---HHHHTTSCEEEEEECSS-----------SCCEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEeCC-----------CCEEEEEECCHHHHHHHHHHHCCCE
Confidence 334456789999999999998874 89999999999998642 4589999999999999999999999
Q ss_pred CC--CeEEEEEeccCC
Q 001928 184 LD--GRPLRACFGTTK 197 (995)
Q Consensus 184 Ld--GRvLRASfGTTK 197 (995)
++ |+.|+|.|++.|
T Consensus 78 ~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 78 LGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CSSSSCBCEEEECCCC
T ss_pred eCCCCcEEEEEECCCC
Confidence 99 999999999876
No 67
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.50 E-value=2.1e-14 Score=119.37 Aligned_cols=75 Identities=21% Similarity=0.354 Sum_probs=67.1
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001928 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
.|||+|||+.+++++|. ++|++||+|.+|.|.+++.+. .++|+|||+|.+.++|.+||. +||..++||.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVK---HYFEQFGKVDDAMLMFDKTTN-----RHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHH---HHHHTTSCCSEECCCBCSSST-----TSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCE
T ss_pred CEEEecCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCC-----CcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEE
Confidence 48999999999999974 899999999999998776432 367899999999999999998 999999999999
Q ss_pred EEec
Q 001928 191 ACFG 194 (995)
Q Consensus 191 ASfG 194 (995)
|.++
T Consensus 72 v~~A 75 (75)
T 2mss_A 72 CKKA 75 (75)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9875
No 68
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.50 E-value=3.2e-14 Score=129.00 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=66.5
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
..-|||+||++++++++|. ++|.|||+|+++.+.. ++|+|||+|.+++||.+||++|||..++||.
T Consensus 7 ~~wL~VgNL~~~~te~~L~---~lF~q~G~V~~~~l~~-----------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~ 72 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLR---TLCMQHGPLVSFHPYL-----------NQGIALCKYTTREEANKAQMALNNCVLANTT 72 (89)
T ss_dssp CCEEEEECCCTTCCCHHHH---HHHHHHSCEEEEEEET-----------TTTEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cceEEEeCCCccCCHHHHH---HHHHhhCCEEEEEEcC-----------CCcEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 3568999999999887764 9999999999999863 3689999999999999999999999999999
Q ss_pred EEEEecc
Q 001928 189 LRACFGT 195 (995)
Q Consensus 189 LRASfGT 195 (995)
|+|.+++
T Consensus 73 I~V~~A~ 79 (89)
T 2wbr_A 73 IFAESPS 79 (89)
T ss_dssp EEEECCC
T ss_pred EEEEECC
Confidence 9999996
No 69
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.50 E-value=2.5e-14 Score=137.86 Aligned_cols=86 Identities=13% Similarity=0.246 Sum_probs=75.0
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCC--ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYG--KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYG--KIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
.+..|||+|||+.+++++|. ++|++|| +|..|.|.+++.+. .++|+|||+|.+.++|.+||..|||..++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~---~~F~~~G~i~v~~v~i~~d~~tg-----~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLI---QVIRSIGVYDVVELKFAENRANG-----QSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHH---HHHHHTTCCCEEEEEEEECTTTC-----CEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHHCCccEEEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 35789999999999998874 8999999 99999999886532 36899999999999999999999999999
Q ss_pred CeEEEEEeccCCcccc
Q 001928 186 GRPLRACFGTTKYCHA 201 (995)
Q Consensus 186 GRvLRASfGTTKYCs~ 201 (995)
||.|+|.|++.+....
T Consensus 126 Gr~l~V~~a~~~~~~~ 141 (156)
T 3n9u_C 126 GEKVDVRPATRQNLSQ 141 (156)
T ss_dssp TEECEEEECCHHHHHH
T ss_pred CeEeEEEEcCCCcchh
Confidence 9999999998765543
No 70
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.50 E-value=6.6e-14 Score=131.93 Aligned_cols=81 Identities=17% Similarity=0.313 Sum_probs=73.0
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||.|||+.+++++|. ++|++||+|..|.|.+++.+. .++++|||+|.+.++|.+||..|||..++|+.
T Consensus 39 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 110 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIY---ELFSKSGDIKKIIMGLDKMKK-----TACGFCFVEYYSRADAENAMRYINGTRLDDRI 110 (156)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHTTTSEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 5689999999999998874 899999999999999876532 35789999999999999999999999999999
Q ss_pred EEEEeccCC
Q 001928 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|+|.|++.+
T Consensus 111 l~V~~a~~~ 119 (156)
T 1h2v_Z 111 IRTDWDAGF 119 (156)
T ss_dssp CEEEEESCC
T ss_pred EEEEECCCC
Confidence 999999863
No 71
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3e-14 Score=125.11 Aligned_cols=81 Identities=17% Similarity=0.309 Sum_probs=72.7
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcC-CCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCC-CCC
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQ-YGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI-LDG 186 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQ-YGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~-LdG 186 (995)
...|||+|||+.+++++|. ++|++ ||+|..|.|.++..+ .++++|||+|.+.++|.+||..|||.. ++|
T Consensus 9 ~~~l~V~nLp~~~t~~~l~---~~F~~~~G~v~~v~i~~~~~g------~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g 79 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLY---EFFVKVYPSCRGGKVVLDQTG------VSKGYGFVKFTDELEQKRALTECQGAVGLGS 79 (104)
T ss_dssp CCCEEEECCCTTCCHHHHH---HHHHHHCTTEEEEEEEECTTC------CEEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHHhCCCeEEEEEEECCCC------CccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence 4679999999999998874 89999 999999999987633 357899999999999999999999999 999
Q ss_pred eEEEEEeccCCc
Q 001928 187 RPLRACFGTTKY 198 (995)
Q Consensus 187 RvLRASfGTTKY 198 (995)
+.|+|.|+..+-
T Consensus 80 ~~l~v~~a~~~~ 91 (104)
T 2dhg_A 80 KPVRLSVAIPKA 91 (104)
T ss_dssp SCCCCCBCCCCC
T ss_pred EeEEEEEccCCC
Confidence 999999997653
No 72
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5e-14 Score=124.29 Aligned_cols=82 Identities=15% Similarity=0.289 Sum_probs=71.7
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++|| |..|.|.+++.+. ..++++|||+|.+.++|.+|| .|||..++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G-i~~v~i~~~~~~~----g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 84 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIK---EFFRGLN-ISAVRLPREPSNP----ERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK 84 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHH---HHTTTSC-EEEEECCBCSSCT----TSBCSCEEEEESSHHHHHHHH-GGGTCEETTE
T ss_pred CCCEEEEeCCCCcCCHHHHH---HHHHHCC-ceEEEEecCCCCC----CCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc
Confidence 35789999999999999974 8999999 9999998776420 135789999999999999999 9999999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.|+..|-
T Consensus 85 ~l~V~~a~~~~ 95 (104)
T 1wi8_A 85 RIRVDVADQAQ 95 (104)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEccCCC
Confidence 99999998763
No 73
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.8e-14 Score=126.11 Aligned_cols=82 Identities=18% Similarity=0.339 Sum_probs=72.5
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
.....|||.|||+.+++++|. ++|++||+|..|.|.+++.+. .++++|||+|.+.++|.+||..+++ .++|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g 85 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLR---KYFEGFGDIEEAVVITDRQTG-----KSRGYGFVTMADRAAAERACKDPNP-IIDG 85 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHH---HHHHTTSCEEEEEESCCSSSC-----CCCSEEEEEESSHHHHHHHHTCSSC-EETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhCCCeeEEEEEEcCCCC-----ccceEEEEEECCHHHHHHHHHhCCC-cCCC
Confidence 346789999999999998874 899999999999998876432 4678999999999999999999999 8999
Q ss_pred eEEEEEeccCC
Q 001928 187 RPLRACFGTTK 197 (995)
Q Consensus 187 RvLRASfGTTK 197 (995)
+.|+|.|+..+
T Consensus 86 ~~l~V~~a~~~ 96 (116)
T 2cqd_A 86 RKANVNLAYLG 96 (116)
T ss_dssp EECEEEESTTT
T ss_pred EEEEEEEcccC
Confidence 99999998654
No 74
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.8e-13 Score=122.34 Aligned_cols=82 Identities=17% Similarity=0.363 Sum_probs=71.4
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC--
Q 001928 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL-- 184 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L-- 184 (995)
.....|||.|||+.+++++|. ++|++||+|..|.|.+++.+ .++++|||+|.+.++|.+||..|||..+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~i~~~~~g------~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELE---NMLKPFGQVISTRILRDSSG------TSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHH---HTTTTTSCEEEEEEEECSSS------CEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEECCCC------CcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 356789999999999998874 89999999999999987632 3578999999999999999999999999
Q ss_pred ------CCeEEEEEeccCC
Q 001928 185 ------DGRPLRACFGTTK 197 (995)
Q Consensus 185 ------dGRvLRASfGTTK 197 (995)
.|+.|+|.|+..+
T Consensus 94 ~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 94 PPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp CTTSCCCSSCBEEEECCCS
T ss_pred CccccCCCCceeEEccCCC
Confidence 5778999887643
No 75
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.49 E-value=2.2e-14 Score=121.66 Aligned_cols=73 Identities=15% Similarity=0.372 Sum_probs=62.8
Q ss_pred CEEEEeCCCCCC------ChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCC
Q 001928 110 NLVYIIGLPINL------ADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 183 (995)
Q Consensus 110 NLVYVvGLP~~I------AeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~ 183 (995)
+.|||+|||+.+ .+++|. ++|++||+|.+|.|.+.. + .++|+|||+|.+.++|.+||..|||..
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~---~~F~~~G~i~~v~i~~~~-g------~~~g~afV~f~~~~~A~~Ai~~lng~~ 71 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIH---KIFSKFGKITNDFYPEED-G------KTKGYIFLEYASPAHAVDAVKNADGYK 71 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHH---HHHHTTCCEEEEECCCBT-T------BCCCEEEEEESSHHHHHHHHTTSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHH---HHHhhcCCeEEEEecCCC-C------cEeEEEEEEECCHHHHHHHHHHhcCcc
Confidence 579999999998 446653 899999999999987422 2 357899999999999999999999999
Q ss_pred CCCe-EEEEE
Q 001928 184 LDGR-PLRAC 192 (995)
Q Consensus 184 LdGR-vLRAS 192 (995)
++|| .|+|+
T Consensus 72 ~~g~~~l~V~ 81 (81)
T 2krb_A 72 LDKQHTFRVN 81 (81)
T ss_dssp CSSSSCCCCC
T ss_pred cCCceeEEeC
Confidence 9999 99874
No 76
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=6e-14 Score=122.76 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=72.1
Q ss_pred cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 106 VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
......|||+|||+.+++++|. ++|++||+|.+|.|.++ +++|||+|.+.++|.+||+.|||..++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~~~~~-----------kg~afV~f~~~~~a~~a~~~l~g~~~~ 77 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMR---KLFEKYGKAGEVFIHKD-----------KGFGFIRLETRTLAEIAKVELDNMPLR 77 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHH---HHTSTTCCCSEEEEETT-----------TTEEEEECSSSHHHHHHHHHHTTCCBT
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHhhcCCeEEEEEecC-----------CCEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 3456789999999999998874 89999999999999743 468999999999999999999999999
Q ss_pred CeEEEEEeccCCccc
Q 001928 186 GRPLRACFGTTKYCH 200 (995)
Q Consensus 186 GRvLRASfGTTKYCs 200 (995)
|+.|+|.|+..+-..
T Consensus 78 g~~l~v~~a~~~~~~ 92 (99)
T 2cpj_A 78 GKQLRVRFACHSASL 92 (99)
T ss_dssp TBCCEEEESSCCSCC
T ss_pred CceEEEEEcCCCCCC
Confidence 999999999887544
No 77
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.3e-14 Score=125.07 Aligned_cols=82 Identities=18% Similarity=0.263 Sum_probs=71.5
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCc-eEEEEEe-ecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC--CCC
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGK-VLKVSIS-RTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH--SYI 183 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGK-IiKIvIn-rd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLN--G~~ 183 (995)
..+.|||+|||+.+++++|. ++|++||. |..|.|. ++..+ ..++++|||+|.+.++|.+||..|| +..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~---~~f~~~G~~v~~v~i~~~~~~~-----g~~~g~afV~f~~~~~A~~A~~~l~~g~~~ 78 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEIL---EEIAKVTEGVLDVIVYASAADK-----MKNRGFAFVEYESHRAAAMARRKLMPGRIQ 78 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHH---HHHHHHSTTEEEEECCSSSCTT-----TTTCCEEEEEESSHHHHHHHHTTTTTCCSC
T ss_pred CCCEEEEeCCCCcCCHHHHH---HHHHHhcCCceEEEEEccCCCC-----CCcCcEEEEEecCHHHHHHHHHHhhCCCce
Confidence 46789999999999999975 89999999 9999987 44432 2467899999999999999999996 599
Q ss_pred CCCeEEEEEeccCC
Q 001928 184 LDGRPLRACFGTTK 197 (995)
Q Consensus 184 LdGRvLRASfGTTK 197 (995)
++||.|+|.|+..+
T Consensus 79 ~~g~~l~V~~a~~~ 92 (109)
T 2dis_A 79 LWGHQIAVDWAEPE 92 (109)
T ss_dssp BTTBCCEEEESCSS
T ss_pred ecCCeEEEEEcCCC
Confidence 99999999999765
No 78
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=7.3e-14 Score=123.05 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=71.3
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||.|||+.+++++|. ++|++|| |.+|.|.+++.+. .++++|||+|.+.++|.+|| .|||..++||.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~---~~F~~~g-i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 84 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDID---AIFKDLS-IRSVRLVRDKDTD-----KFKGFCYVEFDEVDSLKEAL-TYDGALLGDRS 84 (103)
T ss_dssp CEEEEEESCCTTCCHHHHH---HHTTTSC-EEEEEEEECSSSC-----SEEEEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CeEEEEeCCCCCCCHHHHH---HHHHhCC-ceEEEEeecCCCC-----ccceEEEEEECCHHHHHHHH-hhCCCeECCeE
Confidence 5789999999999999874 8999997 9999999876432 35789999999999999999 89999999999
Q ss_pred EEEEeccCCc
Q 001928 189 LRACFGTTKY 198 (995)
Q Consensus 189 LRASfGTTKY 198 (995)
|+|.|+..+-
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2dng_A 85 LRVDIAEGRK 94 (103)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999998753
No 79
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=5.2e-14 Score=128.36 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=67.1
Q ss_pred cCCEEEEeCCCC-CCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCC--C
Q 001928 108 QRNLVYIIGLPI-NLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI--L 184 (995)
Q Consensus 108 QKNLVYVvGLP~-~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~--L 184 (995)
....|||+|||+ .++++||. ++|++||+|.+|.|.++ +++|||+|++.++|.+||+.|||.. +
T Consensus 14 p~~~l~V~nLp~~~~te~dL~---~lF~~fG~V~~v~i~~~-----------kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 79 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLL---QLVEPFGVISNHLILNK-----------INEAFIEMATTEDAQAAVDYYTTTPALV 79 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHH---TTTGGGSCEEEEEECSS-----------SSCEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCEEEEeCCCCCcCCHHHHH---HHHHhcCCEEEEEEEcC-----------CCEEEEEECCHHHHHHHHHHHcCCCceE
Confidence 356799999999 99888874 89999999999999753 3579999999999999999999754 9
Q ss_pred CCeEEEEEeccCC
Q 001928 185 DGRPLRACFGTTK 197 (995)
Q Consensus 185 dGRvLRASfGTTK 197 (995)
+||.|+|.|+..+
T Consensus 80 ~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 80 FGKPVRVHLSQKY 92 (102)
T ss_dssp TTEECEEEEECCC
T ss_pred CCcEEEEEECCCC
Confidence 9999999999864
No 80
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=4.3e-14 Score=125.99 Aligned_cols=78 Identities=15% Similarity=0.356 Sum_probs=67.5
Q ss_pred CCEEEEeCCCCCC------ChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC
Q 001928 109 RNLVYIIGLPINL------ADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY 182 (995)
Q Consensus 109 KNLVYVvGLP~~I------AeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~ 182 (995)
.+.|||+|||+.+ .+++| .++|++||+|..|.|.+. .+ .++|+|||+|.+.++|.+||..|||.
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l---~~~F~~~G~v~~v~i~~~-~g------~~~G~afV~f~~~~~A~~Ai~~l~g~ 84 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVI---HKIFSKFGKITNDFYPEE-DG------KTKGYIFLEYASPAHAVDAVKNADGY 84 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHH---HHHHGGGSCEEEEECCCB-TT------BSCCEEEEEECSSSHHHHHHHHCSSE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHH---HHHHhcCCCEEEEEeeCC-CC------CeeeEEEEEECCHHHHHHHHHHhCCc
Confidence 4689999999998 44565 389999999999999842 22 35789999999999999999999999
Q ss_pred CCCCe-EEEEEeccC
Q 001928 183 ILDGR-PLRACFGTT 196 (995)
Q Consensus 183 ~LdGR-vLRASfGTT 196 (995)
.++|| .|+|.+++.
T Consensus 85 ~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 85 KLDKQHTFRVNLFTD 99 (105)
T ss_dssp ECSTTCEEEEECSCC
T ss_pred ccCCCceEEEEEcch
Confidence 99999 999999875
No 81
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.48 E-value=8.5e-14 Score=127.53 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=68.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCC--CCC
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI--LDG 186 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~--LdG 186 (995)
...|||.|||+.+++++|. ++|++||+|.+|.|.+. +++|||+|++.++|.+||..++|.. +.|
T Consensus 21 s~~l~V~NLp~~~te~~L~---~lF~~fG~V~~v~i~~~-----------kg~AFVef~~~~~A~~Av~~ln~~~~~i~G 86 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLV---EALQEFGPISYVVVMPK-----------KRQALVEFEDVLGACNAVNYAADNQIYIAG 86 (100)
T ss_dssp CSEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHHHSCEEETT
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHhccCCEEEEEEEcC-----------CCEEEEEECCHHHHHHHHHHhcCCCceeCC
Confidence 5679999999999999974 89999999999999742 4689999999999999999999986 789
Q ss_pred eEEEEEeccCCc
Q 001928 187 RPLRACFGTTKY 198 (995)
Q Consensus 187 RvLRASfGTTKY 198 (995)
|.|+|+|++.|-
T Consensus 87 r~i~V~~S~~k~ 98 (100)
T 3r27_A 87 HPAFVNYSTSQK 98 (100)
T ss_dssp EEEEEEECSCSC
T ss_pred cEEEEEeccccc
Confidence 999999998763
No 82
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.48 E-value=7e-14 Score=126.60 Aligned_cols=81 Identities=15% Similarity=0.301 Sum_probs=72.0
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||+.+++++|. ++|++||+|.+|.|.+++... .++++|||+|.+.++|.+|| .+||..++|+.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 106 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLE---AHFSSCGSINRITILCDKFSG-----HPKGYAYIEFAERNSVDAAV-AMDETVFRGRT 106 (124)
T ss_dssp HTEEEEEEECTTCCHHHHH---HHHHTTSCEEEEEEEEECTTS-----SCEEEEEEEESSHHHHHHHH-TTTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCC-----CcccEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 4679999999999998874 899999999999999875432 36889999999999999999 89999999999
Q ss_pred EEEEeccCCc
Q 001928 189 LRACFGTTKY 198 (995)
Q Consensus 189 LRASfGTTKY 198 (995)
|+|.|+.+..
T Consensus 107 l~V~~a~~~~ 116 (124)
T 2jwn_A 107 IKVLPKRTNM 116 (124)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 9999988654
No 83
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.48 E-value=6.5e-14 Score=131.35 Aligned_cols=83 Identities=20% Similarity=0.324 Sum_probs=74.3
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
.....|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .++|+|||+|.+.++|.+||..|||..++|
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~---~~F~~~G~v~~~~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLR---RVFEKYGRVGDVYIPRDRYTK-----ESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHH---HHHHHHSCEEEEECCCCSSCT-----TSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeecCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 446789999999999998874 899999999999998876432 468899999999999999999999999999
Q ss_pred eEEEEEeccCC
Q 001928 187 RPLRACFGTTK 197 (995)
Q Consensus 187 RvLRASfGTTK 197 (995)
|.|+|.|+..+
T Consensus 140 ~~l~v~~a~~~ 150 (158)
T 2kn4_A 140 RELRVQMARYG 150 (158)
T ss_dssp SEEEEEEECCS
T ss_pred eEEEEEECCCC
Confidence 99999999875
No 84
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.6e-14 Score=125.74 Aligned_cols=82 Identities=20% Similarity=0.355 Sum_probs=72.8
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++||+|..|.|.+++.+. .++++|||+|.+.++|.+||.. +|..++||
T Consensus 26 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~ 96 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLR---NYYEQWGKLTDCVVMRDPASK-----RSRGFGFVTFSSMAEVDAAMAA-RPHSIDGR 96 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHH---HHHTSSCCCSEEEEECCTTTS-----SCCSEEEEECSSHHHHHHHHTS-CSEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEECCCCC-----CcCceEEEEeCCHHHHHHHHHh-CCcEECCE
Confidence 34679999999999998874 899999999999999876432 3678999999999999999999 99999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.|+..|-
T Consensus 97 ~l~V~~a~~~~ 107 (116)
T 1x4b_A 97 VVEPKRAVARE 107 (116)
T ss_dssp EEEEECCSSCC
T ss_pred EEEEEECCCCc
Confidence 99999998763
No 85
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.48 E-value=1.1e-13 Score=118.00 Aligned_cols=78 Identities=18% Similarity=0.373 Sum_probs=68.1
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .++|+|||+|.+.++|.+||.. +|..++||
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~ 80 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLK---DYFTKFGEVVDCTIKMDPNTG-----RSRGFGFILFKDAASVEKVLDQ-KEHRLDGR 80 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHH---HHHTTTSCEEEEEEEECTTTC-----CEEEEEEEEESSTHHHHHHHHS-SCEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEeecCCCC-----ccccEEEEEECCHHHHHHHHHh-CCCEECCE
Confidence 35689999999999988874 899999999999999876432 3578999999999999999965 88899999
Q ss_pred EEEEEec
Q 001928 188 PLRACFG 194 (995)
Q Consensus 188 vLRASfG 194 (995)
.|+|.++
T Consensus 81 ~i~v~~A 87 (87)
T 3s7r_A 81 VIDPKKA 87 (87)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999875
No 86
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.48 E-value=3.8e-14 Score=122.75 Aligned_cols=82 Identities=17% Similarity=0.433 Sum_probs=70.6
Q ss_pred CCEEEEeCCCCCCChHHHHH-hHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 109 RNLVYIIGLPINLADEDLLQ-RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLR-k~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
.+.|||+|||+.+++++|.+ -+++|++||+|.+|.|.++. ..+++|||+|.+.++|.+||..|||..++|+
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~--------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSL--------KMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHH--------HHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCC--------CcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 57899999999999988631 13899999999999987431 1357899999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.|+..+-
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 99999998763
No 87
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.1e-14 Score=130.52 Aligned_cols=79 Identities=20% Similarity=0.340 Sum_probs=69.7
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCC--CCCCC
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHS--YILDG 186 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG--~~LdG 186 (995)
...|||+|||+.+++++|. ++|++||+|.+|.|.++ +|+|||+|++.++|.+||..++| ..++|
T Consensus 16 ~~~LfV~nLp~~vte~dL~---~lF~~fG~V~~v~i~~~-----------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G 81 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVI---SLGLPFGKVTNLLMLKG-----------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 81 (105)
T ss_dssp CCEEEECSCCTTSCHHHHH---HHHHHHCCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEcC-----------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 4679999999999998874 89999999999999853 47899999999999999999864 78999
Q ss_pred eEEEEEeccCCcccc
Q 001928 187 RPLRACFGTTKYCHA 201 (995)
Q Consensus 187 RvLRASfGTTKYCs~ 201 (995)
|.|+|.|+..|.-..
T Consensus 82 r~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 82 QPIYIQFSNHKELKT 96 (105)
T ss_dssp EECCBCCCSSSSCCC
T ss_pred EEEEEEEcCCCCCCc
Confidence 999999998875443
No 88
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.48 E-value=8.6e-14 Score=124.51 Aligned_cols=79 Identities=20% Similarity=0.469 Sum_probs=71.0
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
.+.|||+|||+.+++++|. ++|++||.|..|.|.++.. .+|+|||+|.+.++|.+||..|||..++|+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMY---DIFGKYGPIRQIRVGNTPE--------TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp CSEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEECSTT--------TTTCEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeeCCC--------CCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 5689999999999998874 8999999999999986532 3689999999999999999999999999999
Q ss_pred EEEEeccCCc
Q 001928 189 LRACFGTTKY 198 (995)
Q Consensus 189 LRASfGTTKY 198 (995)
|+|.|+..+-
T Consensus 77 l~v~~a~~~~ 86 (115)
T 3lqv_A 77 LVVLYYNANR 86 (115)
T ss_dssp CEEEECCHHH
T ss_pred EEEEEecCCh
Confidence 9999998643
No 89
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=7.8e-14 Score=124.27 Aligned_cols=76 Identities=18% Similarity=0.422 Sum_probs=69.7
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||..+++++|. ++|++||+|..|.|.++ +++|||+|.+.++|.+||..|||..++|+.
T Consensus 25 ~~~l~V~nl~~~~t~~~l~---~~F~~~G~i~~v~i~~~-----------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 90 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMR---QTFSPFGQIMEIRVFPE-----------KGYSFVRFSTHESAAHAIVSVNGTTIEGHV 90 (109)
T ss_dssp CCEEEEECCSSCCCHHHHH---HHHHHHSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeCC-----------CCEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 5689999999999998874 89999999999999754 468999999999999999999999999999
Q ss_pred EEEEeccCCc
Q 001928 189 LRACFGTTKY 198 (995)
Q Consensus 189 LRASfGTTKY 198 (995)
|+|.|+..+-
T Consensus 91 l~v~~a~~~~ 100 (109)
T 1x4g_A 91 VKCYWGKESP 100 (109)
T ss_dssp CEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9999998764
No 90
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=5.7e-14 Score=123.81 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=73.7
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
.....|||.|||+.+++++|. ++|++||+|..|.|.+++... .++++|||+|.+.++|.+||.. ||..++|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 84 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLR---SYFSQYGEVVDCVIMKDKTTN-----QSRGFGFVKFKDPNCVGTVLAS-RPHTLDG 84 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHH---HHHHTTSCEEEEEEEECSSSC-----CEEEEEEEEESSTTHHHHHHHH-CSEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeeCCCCC-----CcceEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 346789999999999999874 899999999999999876432 3578999999999999999999 9999999
Q ss_pred eEEEEEeccCCc
Q 001928 187 RPLRACFGTTKY 198 (995)
Q Consensus 187 RvLRASfGTTKY 198 (995)
+.|+|.|++.|-
T Consensus 85 ~~l~V~~a~~~~ 96 (105)
T 2dh8_A 85 RNIDPKPCTPRG 96 (105)
T ss_dssp EEEBCCCSCCSS
T ss_pred EEEEEEEccCCC
Confidence 999999998764
No 91
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=5.7e-14 Score=123.06 Aligned_cols=75 Identities=25% Similarity=0.558 Sum_probs=68.2
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||..+++++|. ++|++||+|..|.|.+ .+++|||+|.+.++|.+||..|||..++|+.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~---~~f~~~G~i~~~~~~~-----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLI---PLFQNFGFILDFKHYP-----------EKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHHTTSCCSEEEEET-----------TTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEcCCCcccCHHHHH---HHHHhCCCEEEEEEec-----------CCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3679999999999998874 8999999999999872 3578999999999999999999999999999
Q ss_pred EEEEeccCC
Q 001928 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|+|.|+..|
T Consensus 93 l~V~~a~~~ 101 (101)
T 2la4_A 93 LRTGWGKER 101 (101)
T ss_dssp CCCCBCCCC
T ss_pred EEEEeccCC
Confidence 999998765
No 92
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=4.6e-14 Score=123.61 Aligned_cols=76 Identities=20% Similarity=0.305 Sum_probs=69.3
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001928 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
+.|||+|||+.+++++|. ++|++||+|.+|.|.++ ++++|||+|.+.++|.+||..|||..++|+.|
T Consensus 1 ~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELE---RAFSYYGPLRTVWIARN----------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHH---HHHHHHCCCSEEEEESS----------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC
T ss_pred CEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEeeC----------CCCEEEEEECCHHHHHHHHHHHCCCeECCcEE
Confidence 469999999999998874 89999999999999865 25789999999999999999999999999999
Q ss_pred EEEeccCCc
Q 001928 190 RACFGTTKY 198 (995)
Q Consensus 190 RASfGTTKY 198 (995)
+|.|+..+-
T Consensus 68 ~V~~a~~~~ 76 (101)
T 2hvz_A 68 RVELSTGMP 76 (101)
T ss_dssp EEEESSSCC
T ss_pred EEEEccCCC
Confidence 999998754
No 93
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.47 E-value=2.9e-13 Score=124.18 Aligned_cols=110 Identities=16% Similarity=0.351 Sum_probs=88.3
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
++.|||+|||+.+++++|. ++|++||+|.+|.|.++.... .++++|||+|.+.++|.+||+.+||..+.|+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~v~~~~~~~~~-----~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 73 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFR---SLFGSIGEIESCKLVRDKITG-----QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 73 (167)
T ss_dssp CSEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cceEEEcCCCCCCCHHHHH---HHHHhcCCeEEEEEEeCCCCC-----cceeEEEEEECCHHHHHHHHHHcCCCccCCce
Confidence 4689999999999998874 899999999999999876432 35789999999999999999999999999999
Q ss_pred EEEEeccCCcccccccCCCCCCCCCcccccCCCCCCCccHHHHHHhhcc
Q 001928 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (995)
Q Consensus 189 LRASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~tr 237 (995)
|+|.|+..+.-. ....++|+-.+.. ..|.+||.....+
T Consensus 74 l~v~~~~~~~~~--------~~~~~l~v~nl~~---~~t~~~l~~~f~~ 111 (167)
T 1fxl_A 74 IKVSYARPSSAS--------IRDANLYVSGLPK---TMTQKELEQLFSQ 111 (167)
T ss_dssp CEEEECCCCCGG--------GTTCEEEEESCCT---TCCHHHHHHHHGG
T ss_pred EEEEecCCCccc--------CCCCcEEECCCCC---cCCHHHHHHHHHh
Confidence 999999865321 2234456555443 4688888765544
No 94
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.4e-13 Score=124.56 Aligned_cols=77 Identities=16% Similarity=0.269 Sum_probs=67.8
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC--CCCCCC
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH--SYILDG 186 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLN--G~~LdG 186 (995)
...|||+|||+.+++++|. ++|++||+|.+|.|.++ +++|||+|.+.++|.+||..++ |..++|
T Consensus 15 ~~~l~V~nLp~~~te~~L~---~~F~~fG~v~~v~i~~~-----------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVI---ALGLPFGKVTNILMLKG-----------KNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp CSEEEEESCCTTCCHHHHH---HTTTTTSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEECC-----------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 4679999999999988874 89999999999998753 4789999999999999999874 678999
Q ss_pred eEEEEEeccCCcc
Q 001928 187 RPLRACFGTTKYC 199 (995)
Q Consensus 187 RvLRASfGTTKYC 199 (995)
|.|+|.|++.+--
T Consensus 81 r~l~V~~a~~~~~ 93 (101)
T 2cq1_A 81 QPIYIQYSNHKEL 93 (101)
T ss_dssp EECEEEECSCSSC
T ss_pred cEEEEEEcCcccC
Confidence 9999999987643
No 95
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.47 E-value=1.3e-13 Score=121.80 Aligned_cols=74 Identities=20% Similarity=0.446 Sum_probs=67.4
Q ss_pred cCCEEEEeCCCC-CCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 108 QRNLVYIIGLPI-NLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 108 QKNLVYVvGLP~-~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
..+.|||+|||+ .+++++|. ++|++||+|..|.|. +++|||+|.+.++|.+||..+||..++|
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~---~~F~~~G~v~~v~i~-------------~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLF---RIFSPYGHIMQINIK-------------NAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHH---HHHGGGSCEEEEEEC-------------SSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred CCCEEEEeCCCcccCCHHHHH---HHHHhcCCEEEEEEe-------------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 367899999998 99888874 899999999999983 3689999999999999999999999999
Q ss_pred eEEEEEeccCC
Q 001928 187 RPLRACFGTTK 197 (995)
Q Consensus 187 RvLRASfGTTK 197 (995)
+.|+|.|+..+
T Consensus 85 ~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 KKLILEVSSSN 95 (97)
T ss_dssp EECEEEECCCC
T ss_pred EEEEEEecCCC
Confidence 99999998765
No 96
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=9.2e-14 Score=126.18 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=68.3
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC--CCCC
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY--ILDG 186 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~--~LdG 186 (995)
...|||+|||+.+++++|. ++|++||+|.+|.|.++ +++|||+|.+.++|.+||..++|. .++|
T Consensus 15 ~~~l~V~nLp~~~te~~L~---~~F~~fG~V~~v~i~~~-----------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLV---EALEKFGTICYVMMMPF-----------KRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CSEEEEESCCSSCCHHHHH---HHHTTTSCEEEEEEETT-----------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEECC-----------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 4679999999999988874 89999999999998742 468999999999999999999775 4999
Q ss_pred eEEEEEeccCCccc
Q 001928 187 RPLRACFGTTKYCH 200 (995)
Q Consensus 187 RvLRASfGTTKYCs 200 (995)
|.|+|.|+..|--.
T Consensus 81 r~l~V~~a~~~~~~ 94 (104)
T 1wex_A 81 QQAFFNYSTSKRIT 94 (104)
T ss_dssp SBCEEEECSSSSCC
T ss_pred EEEEEEEccCcccc
Confidence 99999999876543
No 97
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=123.18 Aligned_cols=86 Identities=13% Similarity=0.275 Sum_probs=74.1
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEE-EEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLK-VSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiK-IvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
....|||+|||+.+++++|. ++|++||.|.+ |.|.++..+ .++|+|||+|.+.++|.+||.. ||..++|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~v~~~v~i~~~~~g------~~~G~afV~F~~~~~a~~A~~~-~~~~~~g 83 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIV---QFFSGLEIVPNGMTLPVDFQG------RSTGEAFVQFASQEIAEKALKK-HKERIGH 83 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHTTTCCEEEEEEECCBCSSS------CBCSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCcceeEEEEECCCC------CcceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence 46789999999999999974 89999999998 878776433 3578999999999999999998 9999999
Q ss_pred eEEEEEeccCCcccccc
Q 001928 187 RPLRACFGTTKYCHAWI 203 (995)
Q Consensus 187 RvLRASfGTTKYCs~FL 203 (995)
|.|+|.+++.+.-...+
T Consensus 84 r~i~v~~~~~~~~~~~~ 100 (104)
T 1wg5_A 84 RYIEIFKSSRAEVRTSG 100 (104)
T ss_dssp SCCEEEEECTTTSCCSS
T ss_pred cEEEEEECCHHHHHHhc
Confidence 99999999887654443
No 98
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.47 E-value=9.9e-14 Score=132.65 Aligned_cols=86 Identities=10% Similarity=0.290 Sum_probs=75.3
Q ss_pred cccccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCC
Q 001928 104 VRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 183 (995)
Q Consensus 104 VRVIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~ 183 (995)
.+....++|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .++++|||+|.+.++|.+||..|||..
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~Ai~~l~g~~ 138 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQ---EKFCDYGEIKNIHLNLDRRTG-----FSKGYALVEYETHKQALAAKEALNGAE 138 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTS-----SEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHH---HHhhcCCCEEEEEEEecCCCC-----cEeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 345667889999999999988874 899999999999999876432 357899999999999999999999999
Q ss_pred CCCeEEEEEeccCC
Q 001928 184 LDGRPLRACFGTTK 197 (995)
Q Consensus 184 LdGRvLRASfGTTK 197 (995)
+.|+.|+|.|+..+
T Consensus 139 ~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 139 IMGQTIQVDWCFVK 152 (165)
T ss_dssp ETTEECEEEESEEC
T ss_pred ECCEEEEEEEecCC
Confidence 99999999998765
No 99
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=118.95 Aligned_cols=79 Identities=19% Similarity=0.454 Sum_probs=71.2
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++| +|..|.|.++..+ .++|+|||+|.+.++|.+||. +||..++||
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~---~~F~~~-~i~~v~i~~~~~g------~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr 77 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVM---EFLAPL-KPVAIRIVRNAHG------NKTGYIFVDFSNEEEVKQALK-CNREYMGGR 77 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHH---HHHTTS-CCSEEEEEECTTS------CEEEEEEEECSSHHHHHHHHH-SCSEEETTE
T ss_pred CccEEEEECCCCCCCHHHHH---HHHhhC-CceEEEEEECCCC------CCceEEEEEECCHHHHHHHHH-hCCceeCCc
Confidence 46789999999999999974 899999 9999999987433 357899999999999999999 999999999
Q ss_pred EEEEEeccCC
Q 001928 188 PLRACFGTTK 197 (995)
Q Consensus 188 vLRASfGTTK 197 (995)
.|+|.+++.+
T Consensus 78 ~i~v~~a~~~ 87 (91)
T 2dgw_A 78 YIEVFREKSG 87 (91)
T ss_dssp EEEEEEESSC
T ss_pred EEEEEECCcC
Confidence 9999999876
No 100
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.47 E-value=6e-14 Score=123.81 Aligned_cols=80 Identities=16% Similarity=0.302 Sum_probs=69.7
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecC-CCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTA-TGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~-~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
....|||+|||+.+++++|. ++|++|| |..|.|.++. .. ..++|+|||+|.+.++|.+|| .+||..++|
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~---~~F~~~G-i~~v~i~~~~~~~-----g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g 87 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIK---EFFRGLN-ISAVRLPREPSNP-----ERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 87 (100)
T ss_dssp --CEEEESCCSSCCSSSHHH---HHSCSSC-EEEEECSCCTTTT-----CCCCSCEEEEECCHHHHHHHH-HTTTCCBTT
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHhcC-CeEEEEEecCCcC-----CccCeEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 35779999999999999974 8999999 9999998775 22 136789999999999999999 999999999
Q ss_pred eEEEEEeccCC
Q 001928 187 RPLRACFGTTK 197 (995)
Q Consensus 187 RvLRASfGTTK 197 (995)
|.|+|.|+..+
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 99999998765
No 101
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=118.44 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=67.7
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||.|||+.+++++|. ++|++||+|.+|.|. +++|||+|.+.++|.+||..+||..++|+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~v~~~-------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIR---SLFEQYGKVLECDII-------------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp CEEEEEESCCSSCCHHHHH---HHHHTSSCEEEEEEE-------------TTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CeEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEE-------------CCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 4679999999999998874 899999999999986 258999999999999999999999999999
Q ss_pred EEEEeccCCc
Q 001928 189 LRACFGTTKY 198 (995)
Q Consensus 189 LRASfGTTKY 198 (995)
|+|.|+..+-
T Consensus 72 l~v~~a~~~~ 81 (90)
T 2dnq_A 72 INVEASKNKS 81 (90)
T ss_dssp CEEECSSCCC
T ss_pred EEEEECCCCC
Confidence 9999998764
No 102
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.46 E-value=1.8e-13 Score=130.72 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=67.1
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC--eE
Q 001928 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG--RP 188 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG--Rv 188 (995)
+|||+||++.+++++| +++|++||+|.+|+|.++. .++.|||+|.+.++|.+||++|||..++| +.
T Consensus 30 ~I~V~NL~~~vte~~L---~~lFs~yG~V~~V~i~~~~---------~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVL---HQIFSKFGTVLKIITFTKN---------NQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp EEEEESCCSCCCHHHH---HHHHTTSSCEEEEEEEEET---------TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred EEEECCCCCCCCHHHH---HHHHhCcCCEEEEEEEcCC---------CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 5899999999988876 4999999999999997532 13349999999999999999999999998 99
Q ss_pred EEEEeccCCc
Q 001928 189 LRACFGTTKY 198 (995)
Q Consensus 189 LRASfGTTKY 198 (995)
||+.|++.+.
T Consensus 98 LrI~~ak~~~ 107 (130)
T 3zzy_A 98 LRIDFSKLTS 107 (130)
T ss_dssp EEEEECSCSS
T ss_pred EEEEecCCCc
Confidence 9999999874
No 103
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=5.2e-14 Score=116.87 Aligned_cols=75 Identities=21% Similarity=0.379 Sum_probs=67.7
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001928 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
+|||+|||+.+++++|. ++|++||+|.+|.|.+++.+. .++|+|||+|.+.++|.+||..++ ..++||.|+
T Consensus 2 ~l~v~nlp~~~t~~~l~---~~F~~~G~v~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~ 72 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLR---EYFGQFGEVKECLVMRDPLTK-----RSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTID 72 (77)
T ss_dssp CEEEESCCSSCCSHHHH---HHHTTTSCCCCEEEECCCCSS-----SCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCE
T ss_pred EEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEecCCCCC-----CcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEE
Confidence 58999999999999974 899999999999998876432 367899999999999999999999 999999999
Q ss_pred EEec
Q 001928 191 ACFG 194 (995)
Q Consensus 191 ASfG 194 (995)
|.++
T Consensus 73 v~~a 76 (77)
T 1uaw_A 73 PKVA 76 (77)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9886
No 104
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.3e-13 Score=123.31 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC--
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG-- 186 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG-- 186 (995)
...|||.|||+.+++++|. ++|++||+|..|.|.++ ++|||+|.+.++|.+||+.|||..++|
T Consensus 15 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~i~~~------------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 79 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLK---DHMREAGDVCYADVYRD------------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 79 (108)
T ss_dssp CCEEEEESCCSSCCHHHHH---HHHGGGSCEEEEEEETT------------TEEEEEESSHHHHHHHHHHSSSEEEECTT
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCEeEEEEecC------------CEEEEEECCHHHHHHHHHHHCcCCccCCc
Confidence 5789999999999998874 89999999999999753 589999999999999999999999999
Q ss_pred ---eEEEEEeccCCc
Q 001928 187 ---RPLRACFGTTKY 198 (995)
Q Consensus 187 ---RvLRASfGTTKY 198 (995)
+.|+|.++..+-
T Consensus 80 ~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 80 GETAYIRVKVDGPRS 94 (108)
T ss_dssp SCEEEEEEEESSCCS
T ss_pred CcceEEEEEeCCCCC
Confidence 999999998753
No 105
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=8.6e-14 Score=120.61 Aligned_cols=78 Identities=22% Similarity=0.330 Sum_probs=68.8
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEE-EEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKV-SISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKI-vInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
....|||+|||+.+++++|. ++|++||+|..| .|.+++.. +.|||+|.+.++|.+||..|||..++|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~~~~i~~~~~~---------~~afV~f~~~~~a~~Ai~~l~g~~~~g 81 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLD---SLLVQYGVVESCEQVNTDSET---------AVVNVTYSSKDQARQALDKLNGFQLEN 81 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHH---HHHHHHSCEEEEEEECCSSSS---------EEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCEEEEEcCCCCCCHHHHH---HHHHhcCCeEEEEEeecCCCC---------CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35679999999999998874 899999999999 57766532 339999999999999999999999999
Q ss_pred eEEEEEeccCC
Q 001928 187 RPLRACFGTTK 197 (995)
Q Consensus 187 RvLRASfGTTK 197 (995)
|.|+|.|++.|
T Consensus 82 ~~l~V~~a~~~ 92 (96)
T 2e44_A 82 FTLKVAYIPDE 92 (96)
T ss_dssp CBCEEEECCCC
T ss_pred cEEEEEEcCcc
Confidence 99999999876
No 106
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=8e-14 Score=126.16 Aligned_cols=74 Identities=12% Similarity=0.260 Sum_probs=67.2
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
.+.|||.|||+.+++++|. ++|++||+|.+|.|.+ .+++|||+|.+.++|.+||+.|||..++||.
T Consensus 10 ~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~v~i~~-----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQ---ETFSRFGSLGRVLLPE-----------GGITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp EEEEEEESCCTTCCHHHHH---HHHHTTSCEEEEECCS-----------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEeC-----------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 5689999999999988874 8999999999999863 2467999999999999999999999999999
Q ss_pred EEEEeccC
Q 001928 189 LRACFGTT 196 (995)
Q Consensus 189 LRASfGTT 196 (995)
|+|.|+..
T Consensus 76 l~V~~a~~ 83 (111)
T 1whx_A 76 LYLEWAPI 83 (111)
T ss_dssp CEEEEEET
T ss_pred EEEEECCC
Confidence 99999875
No 107
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=117.20 Aligned_cols=73 Identities=22% Similarity=0.478 Sum_probs=66.5
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHh-CCCCCCCe
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSV-HSYILDGR 187 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaL-NG~~LdGR 187 (995)
...|||+|||+.+++++|. ++|++||+|..|.|.++ +++|||+|.+.++|.+||..| +|..++|+
T Consensus 12 ~~~l~V~~l~~~~t~~~l~---~~f~~~G~i~~~~~~~~-----------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLR---NHFYQFGEIRTITVVQR-----------QQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp CCCEEEECCTTTSCHHHHH---HHHHTTSCEEEEEEEGG-----------GTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred ccEEEEcCCCCCCCHHHHH---HHHHhCCCEeEEEEECC-----------CCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 4679999999999998874 89999999999999853 468999999999999999999 99999999
Q ss_pred EEEEEecc
Q 001928 188 PLRACFGT 195 (995)
Q Consensus 188 vLRASfGT 195 (995)
.|+|.|+.
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 99999973
No 108
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=118.33 Aligned_cols=76 Identities=16% Similarity=0.374 Sum_probs=68.8
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
.....|||+|||+.+++++|. ++|++||+|..|.|.+ ++|||+|.+.++|.+||..|||..++|
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~v~~~~-------------~~afV~f~~~~~a~~A~~~l~g~~~~g 71 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELR---AKFEEYGPVIECDIVK-------------DYAFVHMERAEDAVEAIRGLDNTEFQG 71 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHH---HHHHTTSCCCEEEECS-------------SEEEEEESCHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEC-------------CEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 346789999999999998874 8999999999999862 379999999999999999999999999
Q ss_pred eEEEEEeccCCc
Q 001928 187 RPLRACFGTTKY 198 (995)
Q Consensus 187 RvLRASfGTTKY 198 (995)
+.|+|.|++.+-
T Consensus 72 ~~l~V~~a~~~~ 83 (92)
T 2dgt_A 72 KRMHVQLSTSRL 83 (92)
T ss_dssp EEEEEEESSCCC
T ss_pred cEEEEEEccCCC
Confidence 999999998764
No 109
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=121.16 Aligned_cols=77 Identities=17% Similarity=0.275 Sum_probs=67.3
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||+|||+.+++++|. ++|++||+|. +.+.... ++++|||+|.+.++|.+||..|||..++|+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~---~~F~~~G~v~-~~~~~~~---------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLK---RALRELGSVP-LRLTWQG---------PRRRAFLHYPDSAAAQQAVSCLQGLRLGTD 84 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHH---HHHHHTTCCC-SEEEEET---------TTTEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCEEEEeCCCCcCcHHHHH---HHHHhcCCEE-EEEEcCC---------CCcEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 35689999999999998874 8999999996 5555432 467999999999999999999999999999
Q ss_pred EEEEEeccCC
Q 001928 188 PLRACFGTTK 197 (995)
Q Consensus 188 vLRASfGTTK 197 (995)
.|+|.|++.+
T Consensus 85 ~l~V~~a~~~ 94 (97)
T 2e5j_A 85 TLRVALARQQ 94 (97)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 9999999875
No 110
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.45 E-value=2.9e-13 Score=149.61 Aligned_cols=91 Identities=13% Similarity=0.241 Sum_probs=77.7
Q ss_pred CcccccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC
Q 001928 103 NVRVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY 182 (995)
Q Consensus 103 nVRVIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~ 182 (995)
++.....+.|||+|||+.+++++|. ++|++||+|+.|.|..+..+. .+.|+|||+|.+.++|.+||..|||.
T Consensus 96 ~~~~~~~~~lfV~nL~~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg-----~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 96 NAQGDAFKTLFVARVNYDTTESKLR---REFEVYGPIKRIHMVYSKRSG-----KPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHH---HHHHHcCCeeEEEeeccCCCC-----CccceEEEeeccHHHHHHHHHHcCCC
Confidence 3344456789999999999988874 899999999999998775432 35789999999999999999999999
Q ss_pred CCCCeEEEEEeccCCcccc
Q 001928 183 ILDGRPLRACFGTTKYCHA 201 (995)
Q Consensus 183 ~LdGRvLRASfGTTKYCs~ 201 (995)
.|+|+.|+|.|+..+-...
T Consensus 168 ~i~gr~i~V~~a~~~~~~~ 186 (437)
T 3pgw_S 168 KIDGRRVLVDVERGRTVKG 186 (437)
T ss_pred EECCEEEEEEEeCCCCCCC
Confidence 9999999999998765433
No 111
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.45 E-value=3.2e-14 Score=124.59 Aligned_cols=68 Identities=37% Similarity=0.940 Sum_probs=60.4
Q ss_pred cccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchhccccchHHH
Q 001928 3 DKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGMAANCERA 75 (995)
Q Consensus 3 De~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~~~~~~~eel 75 (995)
.+++.+||+|+|+++++|..|+||+||+++|++||+++.+ ..+++||.||++|....+.++.++.||+
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~-----~~~~~CP~CR~~~~~~~~~~~~~~~~~~ 75 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT-----DENGLCPACRKPYPEDPAVYKPLSQEEL 75 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTT-----SSCSBCTTTCCBCSSCSSCCCSCCCSSC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHh-----cCCCCCCCCCCccCCCchhhccCCHHHH
Confidence 3567899999999999999999999999999999999963 3578999999999999999888877654
No 112
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=6.1e-14 Score=126.71 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=74.4
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCce-EEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKV-LKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKI-iKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
....|||.|||+.+++++|. ++|++||.| ..|.|.+++.+ .++|+|||+|.+.++|.+||.. ||..++|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~---~~F~~~g~v~~~v~i~~d~~g------~~~G~afV~F~~~~~a~~Al~~-~~~~~~g 83 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVL---QFLEGIPVDENAVHVLVDNNG------QGLGQALVQFKNEDDARKSERL-HRKKLNG 83 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHH---HHTTTSCCCSTTEEECCCTTS------SCSSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred CccEEEEeCcCCcCCHHHHH---HHHHhCCCcCCeEEEEECCCC------CcceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence 46789999999999999974 899999999 88888877643 3678999999999999999998 9999999
Q ss_pred eEEEEEeccCCcccccc
Q 001928 187 RPLRACFGTTKYCHAWI 203 (995)
Q Consensus 187 RvLRASfGTTKYCs~FL 203 (995)
|.|+|.+++.+--..+.
T Consensus 84 r~i~v~~a~~~~~~~~~ 100 (114)
T 2cpy_A 84 REAFVHVVTLEDMREIE 100 (114)
T ss_dssp EEEEEEEECHHHHHHHH
T ss_pred eEEEEEECCHHHHHHHH
Confidence 99999999876544433
No 113
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2e-13 Score=128.13 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=69.0
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCC--CCCCC
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHS--YILDG 186 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG--~~LdG 186 (995)
...|||+|||+.+++++|. ++|++||+|++|.|.++ +++|||+|++.++|.+||..++| ..++|
T Consensus 31 s~~LfVgNLp~~vte~dL~---~lF~~fG~V~~v~i~~~-----------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVI---SLGLPFGKVTNLLMLKG-----------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp CSEEEEESCCTTCCHHHHH---HHHTTTSCCCEEEEEGG-----------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEeCC-----------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 4579999999999988874 89999999999999854 46899999999999999999984 68999
Q ss_pred eEEEEEeccCCccc
Q 001928 187 RPLRACFGTTKYCH 200 (995)
Q Consensus 187 RvLRASfGTTKYCs 200 (995)
|.|+|.|++.|--.
T Consensus 97 r~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 97 QPIYIQFSNHKELK 110 (119)
T ss_dssp BCCEEEECSSSSCC
T ss_pred eEEEEEEccCCCCC
Confidence 99999999876544
No 114
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.45 E-value=1.8e-13 Score=123.28 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=70.3
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .++|+|||+|.+.++|.+||..+ |..++||.
T Consensus 25 ~~~lfV~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~tg-----~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~ 95 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLR---EYFGQFGEVKECLVMRDPLTK-----RSRGFGFVTFMDQAGVDKVLAQS-RHELDSKT 95 (109)
T ss_dssp -CCEEEESCCTTCCHHHHH---HHHTTTSCEEEEEECCCTTTC-----CCTTCEEEEESSHHHHHHHHHSS-CEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHccCCeEEEEEEECCCCC-----CcCcEEEEEECCHHHHHHHHHHC-CCcCCCEE
Confidence 4579999999999999874 899999999999998876432 46789999999999999999987 59999999
Q ss_pred EEEEeccCC
Q 001928 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|+|.++..|
T Consensus 96 l~V~~a~~~ 104 (109)
T 2rs2_A 96 IDPKVAFPR 104 (109)
T ss_dssp EEEEECCCC
T ss_pred EEEEEccCC
Confidence 999999875
No 115
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.45 E-value=3.5e-13 Score=124.42 Aligned_cols=110 Identities=16% Similarity=0.320 Sum_probs=89.1
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
.+.|||+|||+.+++++|. ++|++||+|.+|.|.+++... .++|+|||+|.+.++|.+||..+||..++|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~---~~f~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 74 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELY---ALFRAIGPINTCRIMRDYKTG-----YSYGYAFVDFTSEMDSQRAIKVLNGITVRNKR 74 (168)
T ss_dssp CSEEEEECCCTTCCHHHHH---HHHHTTSCEEEEECCEETTTT-----EECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred ccEEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEEeCCCC-----ccceEEEEEECCHHHHHHHHHhcCCCEeCCcE
Confidence 4679999999999998874 899999999999998876432 35789999999999999999999999999999
Q ss_pred EEEEeccCCcccccccCCCCCCCCCcccccCCCCCCCccHHHHHHhhcc
Q 001928 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (995)
Q Consensus 189 LRASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~tr 237 (995)
|+|.|+..+- ......++|+..+.. ..|.+||.....+
T Consensus 75 l~v~~~~~~~--------~~~~~~~l~v~nl~~---~~t~~~l~~~f~~ 112 (168)
T 1b7f_A 75 LKVSYARPGG--------ESIKDTNLYVTNLPR---TITDDQLDTIFGK 112 (168)
T ss_dssp CEEEECCCCS--------STTTTCEEEEESCCT---TCCHHHHHHHHTS
T ss_pred EEEEecCCCc--------ccCCCCCEEEeCCCC---CCCHHHHHHhhhc
Confidence 9999987643 123345667666653 4788888765544
No 116
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.3e-13 Score=119.55 Aligned_cols=79 Identities=20% Similarity=0.475 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||.|||+.+++++|. ++|++||+|..|.|.+++.+. .++++|||+|.+.++|.+||. +|..++|+.
T Consensus 15 ~~~l~v~nlp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~ 84 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLK---EYFSTFGEVLMVQVKKDLKTG-----HSKGFGFVRFTEYETQVKVMS--QRHMIDGRW 84 (103)
T ss_dssp CCCEEEESCCSSCCHHHHH---HHHGGGSCEEEEEEEECSSSC-----SEEEEEEEEESSHHHHHHHHH--SCEEETTEE
T ss_pred CCEEEEEcCCCcCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----CccceEEEEECCHHHHHHHHH--cCCeeCCeE
Confidence 4679999999999999874 899999999999999876432 357899999999999999999 478999999
Q ss_pred EEEEeccCC
Q 001928 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|+|.|+..|
T Consensus 85 l~v~~a~~~ 93 (103)
T 2cqg_A 85 CDCKLPNSK 93 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEEecCCC
Confidence 999999875
No 117
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.1e-13 Score=119.41 Aligned_cols=78 Identities=17% Similarity=0.342 Sum_probs=67.1
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++||.| .|.++..+ ..+++|||+|.+.++|.+||..|||..++|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~---~~F~~~g~v---~~~~~~~g------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQ---EVFEKATFI---KVPQNQNG------KSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHH---HHCSSCSEE---ECCBCSSS------CBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhCCEE---EEEECCCC------CEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 36789999999999998874 899999988 34443322 3578999999999999999999999999999
Q ss_pred EEEEEeccCC
Q 001928 188 PLRACFGTTK 197 (995)
Q Consensus 188 vLRASfGTTK 197 (995)
.|+|.|+..+
T Consensus 82 ~l~v~~a~~~ 91 (101)
T 2fc9_A 82 AIRLELQGPR 91 (101)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEEcCCC
Confidence 9999999876
No 118
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.44 E-value=4.4e-14 Score=130.46 Aligned_cols=80 Identities=15% Similarity=0.274 Sum_probs=71.1
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEE--EEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC----
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLK--VSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY---- 182 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiK--IvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~---- 182 (995)
.+.|||+|||+.+++++|. ++|++||+|.. |.|.+++.+. .++|+|||+|.+. +|.+||..|||.
T Consensus 23 ~~~lfV~nL~~~~te~~L~---~~F~~~G~v~~~~v~i~~d~~tg-----~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSIL---GALAPYAVLSSSNVRVIKDKQTQ-----LNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCEEEECSCCTTCCSHHHH---HHHGGGCCCCTTTEECCBCSSSS-----SBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHHhCCcceeeEEEEEcCCCC-----CcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 5689999999999998874 89999999966 8888877432 3688999999999 999999999999
Q ss_pred CCCCeEEEEEeccCC
Q 001928 183 ILDGRPLRACFGTTK 197 (995)
Q Consensus 183 ~LdGRvLRASfGTTK 197 (995)
.++||.|+|.|+..+
T Consensus 94 ~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 94 TIDGKTINVEFAKGS 108 (131)
T ss_dssp CGGGCCCCCEECCCS
T ss_pred cCCCEEEEEEECCCC
Confidence 999999999998775
No 119
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.7e-13 Score=119.92 Aligned_cols=76 Identities=20% Similarity=0.412 Sum_probs=68.1
Q ss_pred CCEEEEeCCCC-CCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 109 RNLVYIIGLPI-NLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 109 KNLVYVvGLP~-~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
...|||+|||+ .+++++|. ++|++||+|.+|.|. +++|||+|.+.++|.+||..|||..++|+
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~---~~F~~~G~v~~v~i~-------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 73 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLF---RIFSPYGHIMQINIK-------------NAFGFIQFDNPQSVRDAIECESQEMNFGK 73 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHH---HHHTTTCCCCEEEEE-------------TTEEEEEESCHHHHHHHHHHHTCSSCBTT
T ss_pred CCEEEEeCCCcccCCHHHHH---HHHHhcCCEEEEEEe-------------CCEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 56799999999 99888874 899999999999984 36899999999999999999999999999
Q ss_pred EEEEEeccCCccc
Q 001928 188 PLRACFGTTKYCH 200 (995)
Q Consensus 188 vLRASfGTTKYCs 200 (995)
.|+|.|+..+--.
T Consensus 74 ~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 74 KLILEVSSSNARP 86 (96)
T ss_dssp TBCEEEEECCCC-
T ss_pred EEEEEEcCcCCCC
Confidence 9999999876433
No 120
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.44 E-value=1.7e-13 Score=120.97 Aligned_cols=75 Identities=19% Similarity=0.411 Sum_probs=67.6
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++||+|..|.|.+ ++|||+|.+.++|.+||+.|||..++|+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~---~~F~~~G~i~~v~~~~-------------~~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILE---KAFSQFGKLERVKKLK-------------DYAFIHFDERDGAVKAMEEMNGKDLEGE 73 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHH---HHHHHHSCEEEEEECS-------------SCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEC-------------CEEEEEeCCHHHHHHHHHHHCCCccCCC
Confidence 35679999999999998874 8999999999999862 3799999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.|+..+-
T Consensus 74 ~l~v~~a~~~~ 84 (103)
T 2dgu_A 74 NIEIVFAKPPD 84 (103)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEEcCCCc
Confidence 99999997754
No 121
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.43 E-value=1.1e-13 Score=127.65 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=68.2
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCC-ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYG-KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYG-KIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
...|||+|||+.+++++|. ++|++|| +|..|.|.... ++|+|||+|.+.|+|.+||..|||..++||
T Consensus 28 ~~~l~VgnLp~~~te~dL~---~~F~~~G~~v~~v~i~~~~---------~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLK---DLARENSLETTFSSVNTRD---------FDGTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp CEEEEEECSSCCCCHHHHH---HHHHHHTCCCSEEECSSCS---------SSCCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCEEEEECCCCCCCHHHHH---HHHHHhCCeeEEEEEEcCC---------CCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 5789999999999998873 8999999 89999985321 467999999999999999999999999999
Q ss_pred EEEEEeccCC
Q 001928 188 PLRACFGTTK 197 (995)
Q Consensus 188 vLRASfGTTK 197 (995)
.|+|.+++.+
T Consensus 96 ~i~V~~a~~~ 105 (111)
T 2jvr_A 96 VITVERDDNP 105 (111)
T ss_dssp EEEEEESCC-
T ss_pred EEEEEECCCC
Confidence 9999998754
No 122
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.5e-14 Score=126.07 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=67.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
.+.|||+|||+.+++++|. ++|++||.|..|.+..+... ..++++|||+|.+.++|.+||..|||..++|+.
T Consensus 25 ~~~l~V~nLp~~~t~~~l~---~~f~~~G~v~~~~~~~~~~~-----g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLV---SLFARFQEKKGPPIQFRMMT-----GRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp CSEEEEECCCTTCCHHHHH---HHTHHHHHSSSSCCEEEEEC-----SSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHHhCCccceEEEEEcCC-----CccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 5789999999999999874 89999999944332211111 135789999999999999999999999999999
Q ss_pred EEEEeccCCc
Q 001928 189 LRACFGTTKY 198 (995)
Q Consensus 189 LRASfGTTKY 198 (995)
|+|.|+..+-
T Consensus 97 l~v~~a~~~~ 106 (115)
T 2cpx_A 97 LVIEFGKNKK 106 (115)
T ss_dssp CEEEECCCCS
T ss_pred EEEEEccCCC
Confidence 9999998764
No 123
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=4.8e-13 Score=126.24 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=65.7
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC--eE
Q 001928 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG--RP 188 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG--Rv 188 (995)
+|||+||++.+++++| +++|++||+|.+|+|.+. .+++|||+|.+.++|.+||++|||..++| +.
T Consensus 27 ~l~V~NL~~~vt~~~L---~~~Fs~yG~V~~v~i~~~----------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~ 93 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVL---YTVCNPVGKVQRIVIFKR----------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCT 93 (124)
T ss_dssp EEEEESCCSCCCHHHH---HHHHTTTSCEEEEEEEES----------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSE
T ss_pred EEEEcCcCCCCCHHHH---HHHHHhcCCEEEEEEEeC----------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeE
Confidence 4799999999988876 499999999999999642 12249999999999999999999999988 69
Q ss_pred EEEEeccCCc
Q 001928 189 LRACFGTTKY 198 (995)
Q Consensus 189 LRASfGTTKY 198 (995)
|+|.|+..+-
T Consensus 94 l~V~~Ak~~~ 103 (124)
T 2e5i_A 94 LKIEYARPTR 103 (124)
T ss_dssp EEEECCSCSC
T ss_pred EEEEEecCCc
Confidence 9999998875
No 124
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.43 E-value=2.4e-13 Score=122.68 Aligned_cols=73 Identities=19% Similarity=0.513 Sum_probs=67.5
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
.+.|||+|||+.+++++|. ++|++||+|.+|.|. +|+|||+|.+.++|.+||..|||..++|+.
T Consensus 31 ~~~l~V~nLp~~~t~~~L~---~~F~~~G~i~~v~i~-------------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 31 NTRLFVRPFPLDVQESELN---EIFGPFGPMKEVKIL-------------NGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp CSEEEECSSCTTCCHHHHH---HHHTTTSCCCEEEEE-------------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEECCCCCCCHHHHH---HHHHhcCCEEEEEEE-------------CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 5789999999999998874 899999999999987 258999999999999999999999999999
Q ss_pred EEEEeccCC
Q 001928 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|+|.|+..+
T Consensus 95 l~V~~a~~~ 103 (108)
T 2jvo_A 95 LEVVYSKLP 103 (108)
T ss_dssp CEEESCSCC
T ss_pred EEEEEecCC
Confidence 999998765
No 125
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.2e-13 Score=117.30 Aligned_cols=74 Identities=14% Similarity=0.315 Sum_probs=67.1
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||+|||+.+++++|. ++|++||+|..|.|.+ ++|||+|.+.++|.+||..|||..++|+
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~---~~F~~~G~v~~~~~~~-------------~~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELR---SLFERRGRVIECDVVK-------------DYAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHH---HHHHHHSCEEEEEECS-------------SCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHcCCCEEEEEEEC-------------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 35679999999999998874 8999999999999862 2799999999999999999999999999
Q ss_pred EEEEEeccCC
Q 001928 188 PLRACFGTTK 197 (995)
Q Consensus 188 vLRASfGTTK 197 (995)
.|+|.|+..+
T Consensus 72 ~l~v~~a~~~ 81 (90)
T 2dnp_A 72 RINVELSTKG 81 (90)
T ss_dssp ECEEEESCCC
T ss_pred EEEEEECCCC
Confidence 9999999765
No 126
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.43 E-value=1.3e-13 Score=125.99 Aligned_cols=79 Identities=19% Similarity=0.239 Sum_probs=70.5
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCc---eEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGK---VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGK---IiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L 184 (995)
....|||+|||+.+++++|. ++|++||. |..|.|.+++.+ .++|+|||+|.+.++|.+||+ +||..+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~~~~v~~v~i~~~~~g------~~~G~afV~F~~~~~a~~Al~-~~g~~~ 85 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQ---NFLSDCTIHDGVAGVHFIYTREG------RQSGEAFVELESEDDVKLALK-KDRESM 85 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHTTTSCBTTGGGGEEEEECSSS------CEEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHHcCCccCceeEEEEECCCC------CCCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence 35679999999999999974 89999999 899999887653 358999999999999999999 999999
Q ss_pred CCeEEEEEeccC
Q 001928 185 DGRPLRACFGTT 196 (995)
Q Consensus 185 dGRvLRASfGTT 196 (995)
+||.|+|.+++.
T Consensus 86 ~gr~i~V~~a~~ 97 (118)
T 2db1_A 86 GHRYIEVFKSHR 97 (118)
T ss_dssp TTEEEEEEEECH
T ss_pred CCeEEEEEECCH
Confidence 999999987653
No 127
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.42 E-value=1.1e-13 Score=129.63 Aligned_cols=85 Identities=21% Similarity=0.323 Sum_probs=74.7
Q ss_pred cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 106 VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
......|||.|||+.+++++|. ++|++||+|..|.|.+++.+. .++++|||+|.+.++|.+||..|||..++
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~~g-----~~~G~afV~F~~~~~A~~Ai~~l~g~~i~ 115 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLR---RVFEKYGRVGDVYIPRDRYTK-----ESRGFAFVRFHDKRDAEDAMDAMDGAVLD 115 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHH---HHHGGGSCCSEEECCCCSSSS-----SCCSCCEEECSCHHHHHHHHTTTTTCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhcCCEEEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4456789999999999888874 899999999999998776432 36789999999999999999999999999
Q ss_pred CeEEEEEeccCCc
Q 001928 186 GRPLRACFGTTKY 198 (995)
Q Consensus 186 GRvLRASfGTTKY 198 (995)
|+.|+|.|+..+.
T Consensus 116 g~~l~V~~a~~~~ 128 (135)
T 2lea_A 116 GRELRVQMARYGR 128 (135)
T ss_dssp SSCCEEEECCCCC
T ss_pred CEEEEEEECCCCC
Confidence 9999999998754
No 128
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.2e-13 Score=117.40 Aligned_cols=75 Identities=19% Similarity=0.423 Sum_probs=67.7
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCC--CceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQY--GKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQY--GKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
....|||.|||+.+++++|. ++|++| |+|..|.+. +++|||+|.+.++|.+||..|||..++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~---~~F~~~g~g~v~~~~~~-------------~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIE---KEFNNIKPGAVERVKKI-------------RDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHH---HHHHTTSTTCEEEEEEC-------------SSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred CcCEEEEeCCCCCCCHHHHH---HHHHhcCCcceEEEEEe-------------CCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 35789999999999998874 899999 999998864 358999999999999999999999999
Q ss_pred CeEEEEEeccCCc
Q 001928 186 GRPLRACFGTTKY 198 (995)
Q Consensus 186 GRvLRASfGTTKY 198 (995)
|+.|+|.|+..+.
T Consensus 78 g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 78 GSPIEVTLAKPVD 90 (99)
T ss_dssp TEEEEEECCCCCC
T ss_pred CcEEEEEECCCCC
Confidence 9999999998764
No 129
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=1.8e-13 Score=127.22 Aligned_cols=78 Identities=17% Similarity=0.290 Sum_probs=68.1
Q ss_pred CCEEEEeCCCCC-CChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCC--CCCC
Q 001928 109 RNLVYIIGLPIN-LADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHS--YILD 185 (995)
Q Consensus 109 KNLVYVvGLP~~-IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG--~~Ld 185 (995)
...|||+|||+. +++++|. ++|++||+|.+|.|.+ .+++|||+|.+.++|.+||..|+| ..++
T Consensus 25 ~~~l~V~NLp~~~~te~~L~---~lF~~fG~V~~v~i~~-----------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~ 90 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVL---KLAEPYGKIKNYILMR-----------MKSQAFIEMETREDAMAMVDHCLKKALWFQ 90 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHH---TTTTTTSCCSEEEEET-----------TTTEEEEECSSHHHHHHHHHHHHHSCCCSS
T ss_pred CCEEEEeCCCCccCCHHHHH---HHHHhcCCEEEEEEec-----------CCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 567999999998 9998874 8999999999999963 257899999999999999999865 5699
Q ss_pred CeEEEEEeccCCccc
Q 001928 186 GRPLRACFGTTKYCH 200 (995)
Q Consensus 186 GRvLRASfGTTKYCs 200 (995)
||.|+|.|+..|...
T Consensus 91 Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 91 GRCVKVDLSEKYKKL 105 (112)
T ss_dssp SSCCEEEEECSCSSS
T ss_pred CEEEEEEECcccccc
Confidence 999999999876543
No 130
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.42 E-value=4.5e-13 Score=128.77 Aligned_cols=81 Identities=22% Similarity=0.426 Sum_probs=73.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
.+.|||.|||..+++++|. ++|++||+|..|.|.++.... .++++|||+|.+.++|.+||..|||..++||.
T Consensus 125 ~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~g-----~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 196 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIK---SVFEAFGKIKSATLARDPTTG-----KHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 196 (216)
T ss_dssp SCEEEEECCCTTCCHHHHH---HHHTTSSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCBCSSSB
T ss_pred CcEEEEeCCCCcCCHHHHH---HHHhccCCeeEEEEEecCCCC-----CcCceEEEEecCHHHHHHHHHHccCCEeCCcE
Confidence 4789999999999998874 899999999999999876432 35789999999999999999999999999999
Q ss_pred EEEEeccCC
Q 001928 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|+|.|+.++
T Consensus 197 i~V~~a~~~ 205 (216)
T 2qfj_A 197 LRVGKAVTP 205 (216)
T ss_dssp CEEEECSSC
T ss_pred EEEEEecCC
Confidence 999999886
No 131
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.42 E-value=4.6e-13 Score=122.71 Aligned_cols=80 Identities=21% Similarity=0.386 Sum_probs=71.7
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++||.|..|.|.++.... .++|+|||+|.+.++|.+||..|||..++||
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 157 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLR---NAFKDFPSYLSGHVMWDMQTG-----SSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 157 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHH---HHHTTSTTEEEEEEEECTTTC-----CEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCceEEECCCCCCCCHHHHH---HHHhccCCeeEEEEEecCCCC-----CcceEEEEEeCCHHHHHHHHHHhCCCccCCc
Confidence 35679999999999998874 899999999999999875432 3578999999999999999999999999999
Q ss_pred EEEEEecc
Q 001928 188 PLRACFGT 195 (995)
Q Consensus 188 vLRASfGT 195 (995)
.|+|.|++
T Consensus 158 ~i~v~~a~ 165 (166)
T 3md3_A 158 PLRINWAA 165 (166)
T ss_dssp ECEEEESC
T ss_pred EEEEEecC
Confidence 99999985
No 132
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.42 E-value=2.9e-13 Score=126.83 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=71.1
Q ss_pred cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 106 VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
......|||+|||+.+++++|. ++|++||+|..|.|.++ ++|+|||+|.+.++|.+||..|||..++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~---~~F~~~G~i~~v~i~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~~ 136 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELE---RAFGYYGPLRSVWVARN----------PPGFAFVEFEDPRDAADAVRELDGRTLC 136 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHH---HHHHHHSCEEEEEECSS----------SCSEEEEEESSHHHHHHHHHHHSSSCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHhhCCEEEEEEeeC----------CCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3446789999999999998874 89999999999999764 2579999999999999999999999999
Q ss_pred CeEEEEEeccCC
Q 001928 186 GRPLRACFGTTK 197 (995)
Q Consensus 186 GRvLRASfGTTK 197 (995)
||.|+|.|+..+
T Consensus 137 g~~l~v~~a~~~ 148 (150)
T 2i2y_A 137 GCRVRVELSNGE 148 (150)
T ss_dssp SSCCEEEECCCC
T ss_pred CeEEEEEEcCCC
Confidence 999999999875
No 133
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.5e-13 Score=121.69 Aligned_cols=81 Identities=16% Similarity=0.311 Sum_probs=70.5
Q ss_pred cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 106 VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
-.....|||.|||+.++++||. ++|++|| |++|.|.+++.+ .++++|||+|.+.++|.+||. +||..++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~---~~F~~~G-~~~v~i~~d~~g------~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIY---NFFSPLN-PMRVHIEIGPDG------RVTGEADVEFATHEDAVAAMA-KDKANMQ 80 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHH---HSSCSCC-CSEEEEEESSSS------CEEEEEEEECSSSHHHHHHHT-TSSCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHHHcC-ceEEEEEECCCC------CEeeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 3456789999999999999974 8999999 559999887643 368999999999999999994 7999999
Q ss_pred CeEEEEEeccCC
Q 001928 186 GRPLRACFGTTK 197 (995)
Q Consensus 186 GRvLRASfGTTK 197 (995)
||.|+|..++++
T Consensus 81 gr~i~V~~~~~~ 92 (102)
T 1wez_A 81 HRYVELFLNSTA 92 (102)
T ss_dssp SSCCEEEEECCC
T ss_pred CcEEEEEECCCC
Confidence 999999988764
No 134
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=7.4e-14 Score=127.59 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=68.0
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||+|||+.+++++|. ++|++||.|..+++..+.... .++|+|||+|.+.++|.+||. +||..++||
T Consensus 24 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~v~~~~~~~~~~~g-----~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 94 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVI---DFFKKLDIVEDSIYIAYGPNG-----KATGEGFVEFRNEADYKAALC-RHKQYMGNR 94 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHH---HHSCSSCBCTTTCEEEECTTS-----SEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHhcCCccceEEEEECCCC-----CCCeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 45789999999999999874 899999999984444333221 357899999999999999999 999999999
Q ss_pred EEEEEeccCC
Q 001928 188 PLRACFGTTK 197 (995)
Q Consensus 188 vLRASfGTTK 197 (995)
.|+|.+++.+
T Consensus 95 ~i~V~~a~~~ 104 (124)
T 1wel_A 95 FIQVHPITKK 104 (124)
T ss_dssp CBEEEEECHH
T ss_pred EEEEEECCHH
Confidence 9999988653
No 135
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.41 E-value=3.5e-13 Score=133.31 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=67.6
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC--e
Q 001928 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG--R 187 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG--R 187 (995)
.+|||+||++.+++++| +++|++||+|.+|+|..+. ++++|||+|.+.++|++||+.|||..++| +
T Consensus 47 l~l~VgNL~~~vted~L---~~~Fs~fG~V~~V~i~~k~---------~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~ 114 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVL---HQIFSKFGTVLKIITFTKN---------NQFQALLQYADPVSAQHAKLSLDGQNIYNACC 114 (164)
T ss_dssp EEEEECSCCSCCCHHHH---HHHHHHHSCEEEEEEEESS---------SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCS
T ss_pred EEEEEeCcCCCCCHHHH---HHHHHhcCCEEEEEEEeCC---------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCc
Confidence 35899999999988886 4899999999999996432 36899999999999999999999999966 9
Q ss_pred EEEEEeccCC
Q 001928 188 PLRACFGTTK 197 (995)
Q Consensus 188 vLRASfGTTK 197 (995)
.|||.|+..+
T Consensus 115 ~L~V~~Ak~~ 124 (164)
T 1sjr_A 115 TLRIDFSKLT 124 (164)
T ss_dssp CEEEEECSSS
T ss_pred EEEEEEecCC
Confidence 9999999876
No 136
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.41 E-value=6.9e-14 Score=115.89 Aligned_cols=75 Identities=16% Similarity=0.340 Sum_probs=66.4
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001928 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
+|||+|||+.+++++|. ++|++||+|.+|.|.+++.+. .++++|||+|.+.++|.+||+. +|..++|+.|+
T Consensus 1 ~l~v~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~~-----~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIR---EYFGGFGEVESIELPMDNKTN-----KRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHH---HHHHHHSCCSEECCCCSCCCS-----SSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCC
T ss_pred CEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEecCCCC-----CcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 48999999999998874 899999999999998776432 3578999999999999999995 99999999999
Q ss_pred EEec
Q 001928 191 ACFG 194 (995)
Q Consensus 191 ASfG 194 (995)
|.++
T Consensus 72 v~~a 75 (75)
T 1iqt_A 72 IKVA 75 (75)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9875
No 137
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.41 E-value=1.4e-13 Score=139.67 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=74.2
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCC--ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYG--KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYG--KIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
.+..|||+||++.+++++|. ++|++|| +|++|.|.+++.+. .++++|||+|.+.++|.+||..|||..|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~---~~F~~~G~~~v~~v~i~~d~~tg-----~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLT---EAVHSLGVNDILEIKFFENRANG-----QSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHHH---HHHHTTTCCCEEEEEEEECTTTC-----CEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CccEEEEeCCCCCCCHHHHH---HHHHHHCCcceEEEEEEecCCCC-----ccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence 56789999999999998874 8999999 99999999886432 46899999999999999999999999999
Q ss_pred CeEEEEEeccCCccc
Q 001928 186 GRPLRACFGTTKYCH 200 (995)
Q Consensus 186 GRvLRASfGTTKYCs 200 (995)
||.|+|.|++.+-..
T Consensus 139 Gr~l~V~~a~~~~~~ 153 (229)
T 3q2s_C 139 GQNPVVTPVNKQFLS 153 (229)
T ss_dssp TBCCEEEECCHHHHH
T ss_pred CEEeEEEECCCCccc
Confidence 999999998766443
No 138
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.41 E-value=3.6e-13 Score=131.95 Aligned_cols=87 Identities=18% Similarity=0.373 Sum_probs=76.8
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++||+|.+|.|.++..+ .++++|||+|.+.++|.+||..+||..++|+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~g------~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr 157 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQ---ELFAEFGTLKKAAVDYDRSG------RSLGTADVHFERRADALKAMKQYKGVPLDGR 157 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHH---HHHHHTSCCSEEEECCCTTS------SCSCCEEEEESCHHHHHHHHHHSTTCBCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCC------CEeeEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 45799999999999999974 89999999999999887633 3578999999999999999999999999999
Q ss_pred EEEEEeccCCcccccc
Q 001928 188 PLRACFGTTKYCHAWI 203 (995)
Q Consensus 188 vLRASfGTTKYCs~FL 203 (995)
.|+|.|++++....+.
T Consensus 158 ~l~V~~a~~~~~~~~~ 173 (177)
T 2f3j_A 158 PMDIQLVASQIDLEHH 173 (177)
T ss_dssp BCEEEEESSGGGGCC-
T ss_pred EEEEEEecCCCCCCCC
Confidence 9999999987766543
No 139
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2e-13 Score=118.00 Aligned_cols=74 Identities=23% Similarity=0.384 Sum_probs=64.8
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCc-eEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCC-CCCCC
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGK-VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHS-YILDG 186 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGK-IiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG-~~LdG 186 (995)
...|||+|||+.+++++|. ++|++||. |..+.+. ++++|||+|.+.++|.+||+.||| ..++|
T Consensus 8 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~vv~~~~~~------------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 72 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLR---QLFGDRKLPLAGQVLL------------KSGYAFVDYPDQNWAIRAIETLSGKVELHG 72 (93)
T ss_dssp CCCEEEECCCTTCCHHHHH---HHHHHTTCCCSSCEEE------------ETTEEEECCSCHHHHHHHHHHHTTTCEETT
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHHcCCceEEEEEc------------CCCEEEEEECCHHHHHHHHHHccCCeeECC
Confidence 4679999999999998874 89999999 5555542 246899999999999999999999 99999
Q ss_pred eEEEEEeccCC
Q 001928 187 RPLRACFGTTK 197 (995)
Q Consensus 187 RvLRASfGTTK 197 (995)
+.|+|.|+..+
T Consensus 73 ~~l~v~~a~~~ 83 (93)
T 2cqh_A 73 KIMEVDYSVSK 83 (93)
T ss_dssp EECEEEECCCC
T ss_pred EEEEEEEccCc
Confidence 99999999876
No 140
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.40 E-value=4.3e-13 Score=124.58 Aligned_cols=79 Identities=15% Similarity=0.269 Sum_probs=71.2
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
.+.|||.|||+.+++++|. ++|++||+|..|.|.++.... .++|+|||+|.+.++|.+||..|||..++||.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVK---ELLTSFGPLKAFNLVKDSATG-----LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp TTCEEEECCCTTCCHHHHH---HHHHTTSCEEEEEEEECTTTC-----SEEEEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEEcCCCcCCHHHHH---HHHHhcCCceEEEEEecCCCC-----CcceEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence 5789999999999998874 899999999999999875322 35789999999999999999999999999999
Q ss_pred EEEEecc
Q 001928 189 LRACFGT 195 (995)
Q Consensus 189 LRASfGT 195 (995)
|+|.|++
T Consensus 166 l~V~~As 172 (172)
T 2g4b_A 166 LLVQRAS 172 (172)
T ss_dssp CEEEECC
T ss_pred EEEEeCC
Confidence 9999975
No 141
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.40 E-value=2e-13 Score=129.82 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=72.0
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCc---eEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGK---VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGK---IiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L 184 (995)
....|||+|||+.+++++|. ++|++||+ |..|.|.+++.+ .++|+|||+|.+.++|.+||. +||..+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~---~~F~~~G~v~~v~~v~i~~d~~g------~srG~aFV~F~~~e~a~~Al~-~~g~~l 112 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQ---NFLSDCTIHDGAAGVHFIYTREG------RQSGEAFVELGSEDDVKMALK-KDRESM 112 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHH---HHTTTCCCSSSSTTEEEEECSSS------CEEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHhCCcCceeEEEEEECCCC------CCCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence 45789999999999999974 89999999 889999987754 368999999999999999999 999999
Q ss_pred CCeEEEEEeccCC
Q 001928 185 DGRPLRACFGTTK 197 (995)
Q Consensus 185 dGRvLRASfGTTK 197 (995)
+||.|+|.+++.+
T Consensus 113 ~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 113 GHRYIEVFKSHRT 125 (136)
T ss_dssp SSSEEEEEECCHH
T ss_pred CCEEEEEEECChH
Confidence 9999999998754
No 142
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.40 E-value=4.1e-13 Score=115.72 Aligned_cols=75 Identities=17% Similarity=0.296 Sum_probs=67.6
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||+.+++++|. ++|++| +|.+|.|. . ++++|||+|.+.++|.+||+.|||..++||.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~---~~F~~~-~v~~~~i~--~---------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 69 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVH---DLLKDY-DLKYCYVD--R---------NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKD 69 (88)
T ss_dssp CCCEEEESCCSSCCHHHHH---HHTCSS-CCCCEEEE--G---------GGTEEEECCSCHHHHHHHHHHHTTEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHhhC-CeEEEEEe--C---------CCcEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 4679999999999998874 899999 99999985 1 3579999999999999999999999999999
Q ss_pred EEEEeccCCc
Q 001928 189 LRACFGTTKY 198 (995)
Q Consensus 189 LRASfGTTKY 198 (995)
|+|.|+.++-
T Consensus 70 l~V~~a~~~~ 79 (88)
T 1wg1_A 70 LIVQLQPTDA 79 (88)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEcCCCc
Confidence 9999998854
No 143
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=122.97 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=71.4
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCc---eEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGK---VLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGK---IiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L 184 (995)
....|||+|||+.+++++|. ++|++||. |..|.|.+++.+ .++|+|||+|.+.++|.+||. +||..+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~---~~F~~~g~~~~v~~v~i~~~~~g------~~~G~afV~F~~~~~a~~Al~-~~~~~~ 79 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVL---NFFSDCRIRNGENGIHFLLNRDG------KRRGDALIEMESEQDVQKALE-KHRMYM 79 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHH---HHTTTSCBTTTTTTEECCCCTTS------TTCSEEEEEBSSHHHHHHHHT-TTTCCS
T ss_pred CccEEEEeCCCCCCCHHHHH---HHHHhcCCcCCcceEEEEECCCC------CEeeEEEEEECCHHHHHHHHH-hCccee
Confidence 46789999999999999974 89999998 899999887653 368899999999999999999 999999
Q ss_pred CCeEEEEEeccCC
Q 001928 185 DGRPLRACFGTTK 197 (995)
Q Consensus 185 dGRvLRASfGTTK 197 (995)
+||.|+|.+++.+
T Consensus 80 ~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 80 GQRYVEVYEINNE 92 (107)
T ss_dssp SSSCCCCEECCHH
T ss_pred CCeEEEEEECCHH
Confidence 9999999988764
No 144
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1e-12 Score=114.81 Aligned_cols=75 Identities=16% Similarity=0.413 Sum_probs=66.0
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
..+.|||+|| .+++++|. ++|++||+|.+|.|.+ .+++|||+|.+.++|.+||..|||..++|+
T Consensus 14 ~~~~l~V~n~--~~t~~~l~---~~F~~~G~i~~v~i~~-----------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLR---GAFSPFGNIIDLSMDP-----------PRNCAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp CCSEEEEECS--SCCHHHHH---HHHTTTSCEEEEEEET-----------TTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCEEEEcCC--CCCHHHHH---HHHhhCCCEEEEEecC-----------CCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 3568999996 77788864 8999999999999941 357899999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.|+..+-
T Consensus 78 ~l~v~~a~~~~ 88 (97)
T 1x5p_A 78 QLKVNIARKQP 88 (97)
T ss_dssp EEEEECCSSCC
T ss_pred EEEEEECCCCC
Confidence 99999998753
No 145
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.39 E-value=6.6e-13 Score=121.68 Aligned_cols=109 Identities=15% Similarity=0.287 Sum_probs=86.6
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEE
Q 001928 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLR 190 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLR 190 (995)
+|||+|||+.+++++|. ++|++||+|..|.|.+++.+ .++++|||+|.+.++|.+||..+||..+.|+.|+
T Consensus 2 ~l~V~nlp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 72 (166)
T 3md3_A 2 VLYVGNLDKAITEDILK---QYFQVGGPIANIKIMIDKNN------KNVNYAFVEYHQSHDANIALQTLNGKQIENNIVK 72 (166)
T ss_dssp EEEEEEEETTCCHHHHH---HHHGGGSCEEEEEEECCCC-------CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred EEEECCCCCcCCHHHHH---HHHHhcCCeEEEEEEECCCC------CCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeE
Confidence 58999999999998874 89999999999999887653 2578999999999999999999999999999999
Q ss_pred EEeccCCcccccccCCCCCCCCCcccccCCCCCCCccHHHHHHhhcc
Q 001928 191 ACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (995)
Q Consensus 191 ASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~tr 237 (995)
+.++..+-- ..-....++|+.-+.. ..|.+||.....+
T Consensus 73 v~~~~~~~~------~~~~~~~~l~v~nl~~---~~t~~~l~~~f~~ 110 (166)
T 3md3_A 73 INWAFQSQQ------SSSDDTFNLFVGDLNV---NVDDETLRNAFKD 110 (166)
T ss_dssp EEECCCCCC------CCCTTCEEEEEESCCT---TCCHHHHHHHHTT
T ss_pred EEEcCCCCC------CCCCCCceEEECCCCC---CCCHHHHHHHHhc
Confidence 999876532 1122234566555543 4688888766544
No 146
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=3e-13 Score=117.21 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=67.4
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||+|||+.+++++|. ++|++||.|..| ... + .++|+|||+|.+.++|.+||..+||..++||
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~---~~F~~~g~v~~~---~~~-~------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 81 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELK---EVFEDALEIRLV---SQD-G------KSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 81 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHH---HHHCSEEEECCE---EET-T------EEEEEEEEEESSHHHHHHHHHHTTEEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHhhCCcEEEe---CCC-C------CcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 45789999999999999974 899999999776 211 1 2578999999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.|+..|.
T Consensus 82 ~l~v~~a~~~~ 92 (96)
T 1fjc_A 82 SVSLYYTGEKG 92 (96)
T ss_dssp EEEEEECSSSC
T ss_pred EEEEEEcCCCC
Confidence 99999987753
No 147
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=9.4e-13 Score=115.23 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=68.3
Q ss_pred cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 106 VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
......|||.|||+.+++++|. ++|++|+ .|.+.++.... .++++|||+|.+.++|.+||+.|||..++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~---~~F~~~~---~~~~~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLK---ESFDGSV---RARIVTDRETG-----SSKGFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHH---HTSTTCS---EEEEEECSSSC-----SEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCccCHHHHH---HHhcCCe---EEEEEecCCCC-----CcCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 3456779999999999999974 8999985 45555554321 35789999999999999999999999999
Q ss_pred CeEEEEEeccCCc
Q 001928 186 GRPLRACFGTTKY 198 (995)
Q Consensus 186 GRvLRASfGTTKY 198 (995)
|+.|+|.|++.|-
T Consensus 81 g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 81 GNKVTLDWAKPKG 93 (102)
T ss_dssp TEECEEEECCCCC
T ss_pred CeEEEEEEecCCC
Confidence 9999999998763
No 148
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=8.1e-14 Score=122.08 Aligned_cols=80 Identities=10% Similarity=0.047 Sum_probs=67.5
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||+.+++++|. ++|++||.|.. .+.++... ..++++|||+|.+.++|.+||+ |||..++||.
T Consensus 17 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~-~~~~~~~~-----g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~ 86 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELK---VAISELFAKND-LAVVDVRT-----GTNRKFGYVDFESAEDLEKALE-LTGLKVFGNE 86 (101)
T ss_dssp SEEEEEECCCTTSCHHHHH---HHHHHHHHHHT-CCCCEEEE-----ETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBC
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHHhCCcce-EEEecCCC-----CCcCcEEEEEECCHHHHHHHHh-cCCcEECCcE
Confidence 4679999999999998874 89999999988 33333221 1357899999999999999999 9999999999
Q ss_pred EEEEeccCCc
Q 001928 189 LRACFGTTKY 198 (995)
Q Consensus 189 LRASfGTTKY 198 (995)
|+|.|++.|-
T Consensus 87 l~V~~a~~~~ 96 (101)
T 1fj7_A 87 IKLEKPKGRD 96 (101)
T ss_dssp CEEECCSCCC
T ss_pred EEEEEcCCCC
Confidence 9999998753
No 149
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.39 E-value=3.9e-13 Score=119.96 Aligned_cols=72 Identities=22% Similarity=0.387 Sum_probs=65.9
Q ss_pred CCEEEEeCCCCC-CChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 109 RNLVYIIGLPIN-LADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 109 KNLVYVvGLP~~-IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
...|||+|||+. +++++|. ++|++||+|.+|.|. +++|||+|.+.++|.+||..|||..++|+
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~---~~F~~~G~v~~v~i~-------------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 90 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVE---TIFSKYGRVAGCSVH-------------KGYAFVQYSNERHARAAVLGENGRVLAGQ 90 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHH---HHHGGGSCCSEEEEE-------------TTEEEEECSSSHHHHHHHHHHTTCEETTE
T ss_pred CcEEEEeCCCcccCCHHHHH---HHHHhCCCeEEEEEe-------------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 358999999999 8888874 899999999999982 36899999999999999999999999999
Q ss_pred EEEEEeccC
Q 001928 188 PLRACFGTT 196 (995)
Q Consensus 188 vLRASfGTT 196 (995)
.|+|.|+..
T Consensus 91 ~l~V~~a~~ 99 (110)
T 1wf1_A 91 TLDINMAGE 99 (110)
T ss_dssp ECCEEESCC
T ss_pred EEEEEECCC
Confidence 999999874
No 150
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.38 E-value=6.3e-13 Score=130.81 Aligned_cols=79 Identities=15% Similarity=0.357 Sum_probs=70.9
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||.|||+.+++++|. ++|++||.|..|.|.++..+ ++|+|||+|.+.++|.+||+.|||..++||.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~---~~F~~~G~i~~~~i~~d~~~-------~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~ 172 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALY---DTFSAFGNILSCKVVCDENG-------SKGYGFVHFETQEAAERAIEKMNGMLLNDRK 172 (213)
T ss_dssp TTEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEEETTE-------EEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cccceECCcccccHHHHHH---HHHhhcCCeEEEEeeccCCC-------CceEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 4579999999999998874 89999999999999887532 4789999999999999999999999999999
Q ss_pred EEEEeccCC
Q 001928 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|+|.|+..|
T Consensus 173 i~V~~a~~~ 181 (213)
T 4f02_A 173 VFVGRFKSR 181 (213)
T ss_dssp CEEEECCCH
T ss_pred EEEEEcCCC
Confidence 999998653
No 151
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.09 E-value=3.4e-14 Score=127.90 Aligned_cols=82 Identities=18% Similarity=0.342 Sum_probs=72.0
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEE--------EEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLK--------VSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 180 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiK--------IvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLN 180 (995)
.+.|||+|||+.+++++|. ++|++||+|.. |.|.+++.+. .++++|||+|.+.++|.+||..||
T Consensus 7 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~Ai~~l~ 78 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVA---DYFKQIGIIKTNKKTGQPMINLYTDRETG-----KLKGEATVSFDDPPSAKAAIDWFD 78 (116)
Confidence 4679999999999998874 89999999998 8887765422 357899999999999999999999
Q ss_pred CCCCCCeEEEEEeccCCc
Q 001928 181 SYILDGRPLRACFGTTKY 198 (995)
Q Consensus 181 G~~LdGRvLRASfGTTKY 198 (995)
|..++||.|+|.|++.|-
T Consensus 79 g~~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 79 GKEFSGNPIKVSFATRRA 96 (116)
Confidence 999999999999998764
No 152
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.38 E-value=1.5e-12 Score=123.42 Aligned_cols=115 Identities=15% Similarity=0.247 Sum_probs=87.0
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||+.+++++|. ++|++||+|..|.|.++..+. .++|+|||+|.+.++|.+||.. +|..++|+.
T Consensus 13 ~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~ 83 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLR---SHFEQWGTLTDCVVMRDPNTK-----RSRGFGFVTYATVEEVDAAMNA-RPHKVDGRV 83 (196)
T ss_dssp GGEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHT-CSCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEEcCCCC-----CccceEEEEeCCHHHHHHHHhc-CCCEECCEE
Confidence 5679999999999998874 899999999999999876432 3578999999999999999987 999999999
Q ss_pred EEEEeccCCcccccccCCCCCCCCCcccccCCCCCCCccHHHHHHhhcc
Q 001928 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (995)
Q Consensus 189 LRASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~tr 237 (995)
|++.++..+--.. +........++|+..+.. ..|.+||......
T Consensus 84 l~v~~~~~~~~~~--~~~~~~~~~~l~V~nLp~---~~t~~~l~~~F~~ 127 (196)
T 1l3k_A 84 VEPKRAVSREDSQ--RPGAHLTVKKIFVGGIKE---DTEEHHLRDYFEQ 127 (196)
T ss_dssp CEEEECCC-------------CCSEEEEECCTT---TCCHHHHHHHHTT
T ss_pred eeeecccCccccc--ccccCCCcceEEEeCCCC---CCCHHHHHHHHhc
Confidence 9999987653221 112223345677766654 4788888766544
No 153
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.38 E-value=8.6e-13 Score=131.37 Aligned_cols=77 Identities=16% Similarity=0.311 Sum_probs=68.6
Q ss_pred cCCEEEEeCCC-CCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 108 QRNLVYIIGLP-INLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 108 QKNLVYVvGLP-~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
+...|||+||| +.+++++| +++|++||.|.+|.|.++. +|+|||+|.+.++|.+||+.|||..++|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L---~~~F~~~G~v~~v~i~~~~----------~g~afV~f~~~~~A~~Ai~~lng~~~~g 69 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRV---FNVFCLYGNVEKVKFMKSK----------PGAAMVEMADGYAVDRAITHLNNNFMFG 69 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHH---HHHHTTTSCEEEEEECTTS----------TTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCcccCCHHHH---HHHHHhcCCeEEEEEecCC----------CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35789999999 78988876 4999999999999997542 4789999999999999999999999999
Q ss_pred eEEEEEeccCC
Q 001928 187 RPLRACFGTTK 197 (995)
Q Consensus 187 RvLRASfGTTK 197 (995)
|.|+|.|+..+
T Consensus 70 ~~l~v~~s~~~ 80 (205)
T 3tyt_A 70 QKMNVCVSKQP 80 (205)
T ss_dssp EECEEEECSCS
T ss_pred ceEEEEEccCC
Confidence 99999998765
No 154
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.37 E-value=3.2e-13 Score=118.46 Aligned_cols=79 Identities=19% Similarity=0.416 Sum_probs=70.8
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||+.+++++|. ++|++||.|..|.|.+++.+ .++|+|||+|.+.++|.+||. +|..++|+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~g------~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~ 77 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIR---SFFARYGSVKEVKIITDRTG------VSKGYGFVSFYNDVDVQKIVE--SQINFHGKK 77 (102)
T ss_dssp EEEEEEECCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTS------CEEEEEEEEESSCCCHHHHTT--CCCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhCCCeEEEEEEECCCC------CccceEEEEECCHHHHHHHHh--CCCeECCEE
Confidence 4679999999999998874 89999999999999987632 357899999999999999999 999999999
Q ss_pred EEEEeccCCc
Q 001928 189 LRACFGTTKY 198 (995)
Q Consensus 189 LRASfGTTKY 198 (995)
|+|.++..|-
T Consensus 78 l~v~~a~~~~ 87 (102)
T 2xs2_A 78 LKLGPAIRKQ 87 (102)
T ss_dssp CEEEEEEECC
T ss_pred EEEEECCcCc
Confidence 9999998764
No 155
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.37 E-value=6.3e-13 Score=122.94 Aligned_cols=80 Identities=14% Similarity=0.287 Sum_probs=71.7
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||.|||+.+++++|. ++|++||.|..|.|.++.... .++|+|||+|.+.++|.+||+ ++|..++||.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~---~~F~~~G~i~~~~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 157 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFE---EFFSQWGTIIDAQLMLDKDTG-----QSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRK 157 (167)
T ss_dssp CEEEEEEEECTTCCHHHHH---HHHHTTSCCSEEECCCSSSSS-----TTSEEEEEEESSHHHHHHHHH-CSEECSSSSC
T ss_pred CCeEEECCCCCCCCHHHHH---HHHHhCccEEEEEEEEcCCCC-----ccceEEEEEECCHHHHHHHHh-CCCEEeCCeE
Confidence 4679999999999999874 899999999999998775432 468999999999999999998 8999999999
Q ss_pred EEEEeccCC
Q 001928 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|+|.|+..|
T Consensus 158 i~V~~a~pk 166 (167)
T 2cjk_A 158 IEIKRAEPR 166 (167)
T ss_dssp EEEEECCCC
T ss_pred EEEeecCCC
Confidence 999999876
No 156
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=119.95 Aligned_cols=76 Identities=16% Similarity=0.299 Sum_probs=68.5
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001928 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
..|||.|||+.++++||. ++|++| +|..|.|.+++.+ .++|+|||+|.+.+||.+|| .+||..++||.|
T Consensus 17 ~~v~V~nLp~~~te~dl~---~~F~~~-~v~~v~i~~d~~g------~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i 85 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVR---DFFHGL-RVDAVHLLKDHVG------RNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYV 85 (109)
T ss_dssp HEEEEECCCSSCCHHHHH---HHTTTS-CCCEEEECCCTTC------CCCSEEEEECSSHHHHHHHH-HTTTEEETTEEE
T ss_pred CEEEEeCCCCCCCHHHHH---HHhccC-CeeEEEEEECCCC------CCCeEEEEEECCHHHHHHHH-hcCCCeECCeEE
Confidence 579999999999999974 899999 9999999987654 36899999999999999999 799999999999
Q ss_pred EEEeccC
Q 001928 190 RACFGTT 196 (995)
Q Consensus 190 RASfGTT 196 (995)
+|..++.
T Consensus 86 ~V~~a~~ 92 (109)
T 2dnn_A 86 EVSPATE 92 (109)
T ss_dssp EEEECCH
T ss_pred EEEECCc
Confidence 9987754
No 157
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.37 E-value=1.4e-12 Score=128.48 Aligned_cols=111 Identities=15% Similarity=0.342 Sum_probs=86.6
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
..+|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .++|+|||+|.+.++|.+||+.+||..+.||.
T Consensus 15 ~~tlfVgnLp~~~te~~L~---~~F~~~G~I~~v~i~~d~~tg-----~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLY---EKFSPAGPILSIRVCRDMITR-----RSLGYAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhhCCEEEEEEecccCCC-----CccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 4579999999999998874 899999999999999876532 35789999999999999999999999999999
Q ss_pred EEEEeccCCcccccccCCCCCCCCCcccccCCCCCCCccHHHHHHhhc
Q 001928 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFT 236 (995)
Q Consensus 189 LRASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~t 236 (995)
|++.++..+.....- ....+|+.-+. ...|.+||.....
T Consensus 87 i~~~~~~~~~~~~~~------~~~~l~v~nl~---~~~t~~~l~~~F~ 125 (213)
T 4f02_A 87 VRIMWSQRDPSLRKS------GVGNIFIKNLD---KSIDNKALYDTFS 125 (213)
T ss_dssp CEEEECCCCTHHHHH------CTTEEEEESCC---TTCCHHHHHHHHG
T ss_pred ccccccccccccccc------ccccceECCcc---cccHHHHHHHHHh
Confidence 999998765433211 12235554443 2467777765543
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.36 E-value=1.6e-12 Score=124.90 Aligned_cols=117 Identities=15% Similarity=0.285 Sum_probs=87.0
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEE
Q 001928 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPL 189 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvL 189 (995)
..|||.|||+.+++++|. ++|++||+|.+|.|.++.... ..+++|||+|.+.++|.+||..+||..++|+.|
T Consensus 29 ~~l~V~nLp~~~t~~~l~---~~f~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l 100 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIR---QAFAPFGPIKSIDMSWDSVTM-----KHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNI 100 (216)
T ss_dssp TEEEEECCCTTCCHHHHH---HHHGGGSCEEEEEECCC-CC------CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCC
T ss_pred CEEEEECCCCCCCHHHHH---HHHHhCCCEEEEEEeecCCCC-----ccCceEEEEeCCHHHHHHHHHHccCCeeCCeeE
Confidence 479999999999998874 899999999999998776332 357899999999999999999999999999999
Q ss_pred EEEeccCCcccccc-c--CCCCCCCCCcccccCCCCCCCccHHHHHHhhcc
Q 001928 190 RACFGTTKYCHAWI-R--NMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (995)
Q Consensus 190 RASfGTTKYCs~FL-R--n~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~tr 237 (995)
+|.+...+--..-. . ........++|+..+.. ..|.+||......
T Consensus 101 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~---~~t~~~l~~~f~~ 148 (216)
T 2qfj_A 101 KVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQ---DLSDDDIKSVFEA 148 (216)
T ss_dssp EEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCT---TCCHHHHHHHHTT
T ss_pred EEecCCCccccchhhhhhhcccCCCcEEEEeCCCC---cCCHHHHHHHHhc
Confidence 99987765311100 0 00112335667666653 3788888765544
No 159
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.36 E-value=1e-12 Score=124.61 Aligned_cols=83 Identities=14% Similarity=0.237 Sum_probs=74.2
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
.....|||.|||+.+++++|. ++|++||.|..|.|.++.... .++++|||+|.+.++|.+||+.|||..++|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~---~~f~~~G~v~~~~~~~~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVK---ELLTSFGPLKAFNLVKDSATG-----LSKGYAFCEYVDINVTDQAIAGLNGMQLGD 183 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHH---HHHHTBSCEEEEEEEECTTTC-----SEEEEEEEEESSSSHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHHcCCccEEEEeecCCCC-----CcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 456889999999999998874 899999999999999876332 357899999999999999999999999999
Q ss_pred eEEEEEeccCC
Q 001928 187 RPLRACFGTTK 197 (995)
Q Consensus 187 RvLRASfGTTK 197 (995)
|.|+|.|+..+
T Consensus 184 ~~l~v~~a~~~ 194 (198)
T 2yh0_A 184 KKLLVQRASVG 194 (198)
T ss_dssp EECEEEESCCC
T ss_pred EEEEEEECCCC
Confidence 99999999875
No 160
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=114.09 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=64.0
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||+.+++++|. ++|++||+|..|.+ ++.. .+ +|||+|.+.++|.+||. |||..++||.
T Consensus 8 ~~~l~V~nl~~~~t~~~l~---~~F~~~G~v~~v~~--~~~~-------g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~ 73 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLS---EYFLAFGPVASVVM--DKDK-------GV-FAIVEMGDVGAREAVLS-QSQHSLGGHR 73 (94)
T ss_dssp CCEEEEECCCTTCCHHHHH---HHGGGTSCEEEEEE--CSSS-------CC-EEEEEESSHHHHHHHHT-CSCCEETTEE
T ss_pred CCEEEEECCCCCCCHHHHH---HHHHhcCCeEEEEE--cCCC-------Cc-EEEEEECCHHHHHHHHh-cCCeEECCEE
Confidence 3579999999999998874 89999999999833 2221 12 89999999999999999 9999999999
Q ss_pred EEEEeccCC
Q 001928 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|+|.++..|
T Consensus 74 l~V~~a~~~ 82 (94)
T 2e5g_A 74 LRVRPREQK 82 (94)
T ss_dssp CCCBCSCCS
T ss_pred EEEEECCcC
Confidence 999987654
No 161
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.36 E-value=2.1e-12 Score=119.25 Aligned_cols=80 Identities=24% Similarity=0.547 Sum_probs=70.8
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
.....|||.|||..+++++|. ++|++||+|..|.|.++.... .++++|||+|.+.++|.+||+.|||..++|
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLD---TIFGKYGSIVQKNILRDKLTG-----RPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHH---HHHTSSSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCCCEEEeCCCCCCCHHHHH---HhhhcCCcEEEEEEEEcCCCC-----CcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 346789999999999998874 899999999999998876322 357899999999999999999999999988
Q ss_pred --eEEEEEec
Q 001928 187 --RPLRACFG 194 (995)
Q Consensus 187 --RvLRASfG 194 (995)
+.|+|.|+
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999985
No 162
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.35 E-value=1.9e-12 Score=119.91 Aligned_cols=79 Identities=18% Similarity=0.379 Sum_probs=69.8
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC-
Q 001928 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD- 185 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld- 185 (995)
.....|||.|||+.+++++|. ++|++||.|..|.|.++..+ .++|+|||+|.+.++|.+||+.|||..+.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~---~~F~~~G~i~~v~~~~~~~g------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIR---VMFSSFGQIEECRILRGPDG------LSRGCAFVTFTTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTS------CEEEEEEEEESSHHHHHHHHHHHTTSCCCT
T ss_pred CCCCeEEEcCCCCcCCHHHHH---HHHHhCCCEEEEEEEECCCC------CEEEEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 356789999999999998874 89999999999999987643 35789999999999999999999998776
Q ss_pred --CeEEEEEec
Q 001928 186 --GRPLRACFG 194 (995)
Q Consensus 186 --GRvLRASfG 194 (995)
||.|+|.|+
T Consensus 164 g~~~~l~V~~a 174 (175)
T 3nmr_A 164 GCSSPMVVKFA 174 (175)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCCCeEEEec
Confidence 499999986
No 163
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.35 E-value=8.2e-13 Score=122.86 Aligned_cols=78 Identities=19% Similarity=0.419 Sum_probs=67.3
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEE--------EEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLK--------VSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 180 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiK--------IvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLN 180 (995)
.+.|||+|||+.+++++|. ++|++||.|.. |.+..+. ..+|+|||+|.+.++|.+||..||
T Consensus 45 ~~~l~V~nLp~~~te~~L~---~~F~~~G~i~~~~~~~~~di~~~~~g--------~~~g~afV~f~~~~~A~~Ai~~ln 113 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLK---YIFGRYVDFSSETQRIMFDIRLMKEG--------RMKGQAFIGLPNEKAAAKALKEAN 113 (143)
T ss_dssp CSEEEEEEECTTCCHHHHH---HHHGGGCCTTCHHHHHHCEEEEEEET--------TTEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHHhCCcccccccceeeEEeccCC--------CcccEEEEEeCCHHHHHHHHHHhC
Confidence 5779999999999998874 89999999976 3333321 357899999999999999999999
Q ss_pred CCCCCCeEEEEEeccCC
Q 001928 181 SYILDGRPLRACFGTTK 197 (995)
Q Consensus 181 G~~LdGRvLRASfGTTK 197 (995)
|..++||.|+|.|+.++
T Consensus 114 g~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 114 GYVLFGKPMVVQFARSA 130 (143)
T ss_dssp TBEETTEECEEEECCCS
T ss_pred CCEeCCcEEEEEECCCC
Confidence 99999999999999764
No 164
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.34 E-value=1.3e-12 Score=118.69 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=61.1
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
.+.|||.|||+.+++++|. ++|++||+|+.|.|.++ ++|||+|.+.++|.+||+.|||..++|+.
T Consensus 16 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~v~~~~i~~~------------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLK---DHMREAGDVCYADVYRD------------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp -CCEEEEECCSSCCTTHHH---HHHGGGSCEEEEEECTT------------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEecC------------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 5789999999999999874 89999999999998643 58999999999999999999999999998
Q ss_pred EEEE
Q 001928 189 LRAC 192 (995)
Q Consensus 189 LRAS 192 (995)
|++.
T Consensus 81 ~~~~ 84 (115)
T 3beg_B 81 GETA 84 (115)
T ss_dssp SCCC
T ss_pred eeeE
Confidence 4443
No 165
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.34 E-value=2.9e-12 Score=117.52 Aligned_cols=79 Identities=19% Similarity=0.401 Sum_probs=69.5
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||..+++++|. ++|++||.|.+|.|.++.... .++++|||+|.+.++|.+||+.|||..++||
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~g-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELE---QLFSQYGRIITSRILVDQVTG-----VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCCcEEECCCCCcCCHHHHH---HHHHhcCCEeEEEEEecCCCC-----CccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 45779999999999988874 899999999999998876332 3578999999999999999999999999997
Q ss_pred E--EEEEec
Q 001928 188 P--LRACFG 194 (995)
Q Consensus 188 v--LRASfG 194 (995)
. |+|.|+
T Consensus 159 ~~~i~v~~A 167 (167)
T 1fxl_A 159 TEPITVKFA 167 (167)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEEeC
Confidence 5 899885
No 166
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.34 E-value=3.3e-12 Score=128.99 Aligned_cols=83 Identities=18% Similarity=0.419 Sum_probs=71.7
Q ss_pred ccCCEEEEeCCCCCCChHHHHH-hHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 107 IQRNLVYIIGLPINLADEDLLQ-RKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLR-k~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
-..+.|||+|||+.+++++|.+ =+++|++||+|.+|.|.++. ..+|+|||+|.+.++|.+||..|||..++
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~--------~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL--------KMRGQAFVIFKEVSSATNALRSMQGFPFY 78 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCC--------CcceEEEEEECCHHHHHHHHHHhcCCeeC
Confidence 3467899999999999888521 15899999999999998632 25789999999999999999999999999
Q ss_pred CeEEEEEeccCC
Q 001928 186 GRPLRACFGTTK 197 (995)
Q Consensus 186 GRvLRASfGTTK 197 (995)
||.|+|.|+..+
T Consensus 79 g~~l~v~~a~~~ 90 (282)
T 3pgw_A 79 DKPMRIQYAKTD 90 (282)
T ss_pred CcEEEEEEeccC
Confidence 999999998654
No 167
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.32 E-value=3.2e-12 Score=121.09 Aligned_cols=81 Identities=16% Similarity=0.320 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||.|||+.+++++|. ++|++||.|..|.|.++.... .++|+|||+|.+.++|.+||.. +|..++|+.
T Consensus 104 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~ 174 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLR---DYFEQYGKIEVIEIMTDRGSG-----KKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHN 174 (196)
T ss_dssp CSEEEEECCTTTCCHHHHH---HHHTTTSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHC-SCCEETTEE
T ss_pred cceEEEeCCCCCCCHHHHH---HHHhcCCCeEEEEEeecCCCC-----CccceEEEEECCHHHHHHHHHh-CCcEECCEE
Confidence 3679999999999998874 899999999999999876432 3578999999999999999987 899999999
Q ss_pred EEEEeccCCc
Q 001928 189 LRACFGTTKY 198 (995)
Q Consensus 189 LRASfGTTKY 198 (995)
|+|.|+..|-
T Consensus 175 i~v~~a~~k~ 184 (196)
T 1l3k_A 175 CEVRKALSKQ 184 (196)
T ss_dssp CEEEECC---
T ss_pred EEEEecCChh
Confidence 9999998764
No 168
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.32 E-value=5.7e-12 Score=114.65 Aligned_cols=81 Identities=21% Similarity=0.406 Sum_probs=66.2
Q ss_pred CCEEEEeCCCC--CC---ChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCC
Q 001928 109 RNLVYIIGLPI--NL---ADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 183 (995)
Q Consensus 109 KNLVYVvGLP~--~I---AeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~ 183 (995)
...|||.||.. .+ .+++| .++|++||+|.+|.|.+++... ..++|+|||+|.+.++|.+||+.|||..
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl---~~~f~~~G~V~~v~i~~~~~~~----~~~~G~~FV~f~~~~~A~~Ai~~lnG~~ 80 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVET---KEECEKYGKVGKCVIFEIPGAP----DDEAVRIFLEFERVESAIKAVVDLNGRY 80 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHH---HHHGGGGSCEEEEEEEECSSCC----TTTSEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCEEEEEcCCChHHhhHHHHHHH---HHHHHhcCCEEEEEEecCCCCC----CCCcEEEEEEECCHHHHHHHHHHHCCCE
Confidence 34688888853 22 34555 3899999999999999875321 2368999999999999999999999999
Q ss_pred CCCeEEEEEeccC
Q 001928 184 LDGRPLRACFGTT 196 (995)
Q Consensus 184 LdGRvLRASfGTT 196 (995)
++||.|+|.|+..
T Consensus 81 ~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 81 FGGRVVKACFYNL 93 (105)
T ss_dssp ETTEECEEEECCH
T ss_pred ECCcEEEEEEcCH
Confidence 9999999999865
No 169
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=8.7e-13 Score=123.55 Aligned_cols=77 Identities=19% Similarity=0.355 Sum_probs=67.0
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCce----EEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKV----LKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKI----iKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L 184 (995)
...|||.|||+.++++||. ++|++||+| ..|.|.++..+ .++|+|||+|.+.++|.+||+. ||..+
T Consensus 23 ~~~v~V~nLp~~~te~dl~---~~F~~~g~v~g~v~~v~i~~d~~g------r~~G~aFV~F~~~~~A~~Al~~-~~~~l 92 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVV---AFFGQHCPITGGKEGILFVTYPDG------RPTGDAFVLFACEEYAQNALRK-HKDLL 92 (123)
T ss_dssp CCEEEECSCCTTCCHHHHH---HHHHTTSCCTTGGGGEEEEECTTS------CEEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhhCCccCCcceEEEEECCCC------CEeeEEEEEECCHHHHHHHHHh-CCCee
Confidence 4679999999999999974 899999986 68888877543 3689999999999999999997 99999
Q ss_pred CCeEEEEEecc
Q 001928 185 DGRPLRACFGT 195 (995)
Q Consensus 185 dGRvLRASfGT 195 (995)
+||.|+|..++
T Consensus 93 ~gR~i~V~~a~ 103 (123)
T 2dha_A 93 GKRYIELFRST 103 (123)
T ss_dssp SSCEECCEEEC
T ss_pred CCeEEEEEECC
Confidence 99999987653
No 170
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.30 E-value=5e-12 Score=110.54 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=61.2
Q ss_pred cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC-
Q 001928 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL- 184 (995)
Q Consensus 106 VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L- 184 (995)
....++|||+|||+.+++++|. ++|++||+|.+|.|.++ ++|+|||+|.+.++|. .++|..+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~---~~F~~~G~i~~v~i~~~----------srGfaFV~F~~~~~A~----~~~~~~~~ 70 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQ---QFFCQYGEVVDVFIPKP----------FRAFAFVTFADDKVAQ----SLCGEDLI 70 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHH---HHHTTTSCEEEEECCSS----------CCSEEEEEESCHHHHH----HHTTCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHH---HHHhccCCEEEEEEeeC----------CCCEEEEEECCHHHHH----HHcCCCcc
Confidence 3456889999999999998874 89999999999999763 3689999999999998 3677665
Q ss_pred -CCeEEEEEeccCC
Q 001928 185 -DGRPLRACFGTTK 197 (995)
Q Consensus 185 -dGRvLRASfGTTK 197 (995)
.|+.|+|.++..|
T Consensus 71 ~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 71 IKGISVHISNAEPK 84 (89)
T ss_dssp ETTEEEEEEECC--
T ss_pred cCCEEEEEEEcCCC
Confidence 5999999999876
No 171
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.29 E-value=9.1e-13 Score=125.89 Aligned_cols=78 Identities=17% Similarity=0.334 Sum_probs=69.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
..+|||.|||+.++++||. ++|++|| |++|.|.+++.+ .++|+|||+|.++++|.+|| .+||..++||.
T Consensus 46 ~~~lfV~nLp~~~te~dL~---~~F~~~G-i~~v~i~~d~~g------~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~ 114 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIY---NFFSPLN-PVRVHIEIGPDG------RVTGEADVEFATHEEAVAAM-SKDRANMQHRY 114 (139)
T ss_dssp CCCEECCSCCTTCCHHHHH---HHHCSCC-CSEEECCCSSSS------CSSCCCEEECSHHHHHHHHT-TCCSCSSSSCC
T ss_pred CCEEEEeCCCCCCCHHHHH---HHHHhcC-CeEEEEEECCCC------CCceEEEEEeCCHHHHHHHH-hhCCCEECCEE
Confidence 4579999999999999974 9999999 779999887653 36889999999999999999 89999999999
Q ss_pred EEEEeccCC
Q 001928 189 LRACFGTTK 197 (995)
Q Consensus 189 LRASfGTTK 197 (995)
|+|.+++.+
T Consensus 115 i~V~~a~~~ 123 (139)
T 2hgn_A 115 IELFLNSTT 123 (139)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999988764
No 172
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.29 E-value=2e-12 Score=122.07 Aligned_cols=79 Identities=13% Similarity=0.365 Sum_probs=68.9
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceE--EEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVL--KVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIi--KIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
+...|||+|||+.+++++|. ++|++| .|+ .|.|.+++.+ .++|+|||+|.++++|.+||.. +|..++
T Consensus 41 ~~~~lfVgnLp~~~te~dL~---~~F~~~-~i~~~~v~i~~d~~G------rsrGfaFV~F~~~e~A~~Al~~-~~~~l~ 109 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIV---QFFSGL-EIVPNGITLPVDPEG------KITGEAFVQFASQELAEKALGK-HKERIG 109 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHH---HHTTTS-CEEEEEEECCCCSSS------SSCSEEEEEESSTTHHHHHHTT-TTCCBT
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHhcC-CceeeEEEEEECCCC------CCceEEEEEECCHHHHHHHHHH-CCCEEC
Confidence 46789999999999999974 899999 677 8999887654 3689999999999999999995 889999
Q ss_pred CeEEEEEeccCC
Q 001928 186 GRPLRACFGTTK 197 (995)
Q Consensus 186 GRvLRASfGTTK 197 (995)
||.|+|.+++.+
T Consensus 110 gR~I~V~~a~~~ 121 (126)
T 2hgm_A 110 HRYIEVFKSSQE 121 (126)
T ss_dssp TBCCCCEEECHH
T ss_pred CEEEEEEECCHH
Confidence 999999987654
No 173
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.29 E-value=6.2e-12 Score=117.75 Aligned_cols=77 Identities=21% Similarity=0.362 Sum_probs=67.6
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||.|||+.+++++|. ++|++||.|..| ...+ .++++|||+|.+.++|.+||..|||..++||
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~---~~F~~~g~v~~~----~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELK---EVFEDALEIRLV----SQDG------KSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 164 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHH---HHCTTCSEEEEE----CSSS------SCCSEEEEECSSHHHHHHHHHHHTEEEETTE
T ss_pred cCCEEEEeCCCCCCCHHHHH---HHHHhcCeEEEe----cCCC------CCceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 46789999999999998874 899999999876 2211 3578999999999999999999999999999
Q ss_pred EEEEEeccCC
Q 001928 188 PLRACFGTTK 197 (995)
Q Consensus 188 vLRASfGTTK 197 (995)
.|+|.|+..|
T Consensus 165 ~i~v~~a~~k 174 (175)
T 1fje_B 165 SVSLYYTGEK 174 (175)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEecCCC
Confidence 9999999876
No 174
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.28 E-value=4.4e-12 Score=107.50 Aligned_cols=71 Identities=18% Similarity=0.502 Sum_probs=63.5
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCC----C-------ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHH
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQY----G-------KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCI 176 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQY----G-------KIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAI 176 (995)
+...|||+|||+.+++++|. ++|++| | +|.+|.+.++ +++|||+|.+.++|.+||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~---~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----------kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMM---DFFNAQMRLGGLTQAPGNPVLAVQINQD-----------KNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHH---HHHHHHHHHTTCCSSSSCSEEEEEECSS-----------SSEEEEEESSHHHHHHHG
T ss_pred CCCEEEEeCCCCCCCHHHHH---HHHHHHhhhcccccCCCCcceEEEecCC-----------CcEEEEEcCCHHHHHHHH
Confidence 35679999999999998874 899999 8 9999998643 478999999999999999
Q ss_pred HHhCCCCCCCeEEEEEe
Q 001928 177 QSVHSYILDGRPLRACF 193 (995)
Q Consensus 177 qaLNG~~LdGRvLRASf 193 (995)
.+||..++||.|+|..
T Consensus 71 -~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 71 -AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp -GGTTCEETTEECEEEC
T ss_pred -hcCCCEECCeEEEEeC
Confidence 9999999999999873
No 175
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=2.2e-12 Score=120.62 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=64.7
Q ss_pred CCEEEE--eCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC--
Q 001928 109 RNLVYI--IGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL-- 184 (995)
Q Consensus 109 KNLVYV--vGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L-- 184 (995)
.+.||| +||++.+++++|. ++|++||+|.+|+|.. .+++|||+|.+.+||.+||+.|||..+
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~---~~F~~fG~v~~v~i~~-----------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 90 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLL---PVLEKCGLVDALLMPP-----------NKPYSFARYRTTEESKRAYVTLNGKEVVD 90 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHH---HHHHHHSCEEEEECCT-----------TCSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCEEEEECCCCCCCCCHHHHH---HHHHhcCCeEEEEEeC-----------CCCEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence 356999 8899999888874 8999999999998852 246899999999999999999999988
Q ss_pred ---CCeEEEEEeccC
Q 001928 185 ---DGRPLRACFGTT 196 (995)
Q Consensus 185 ---dGRvLRASfGTT 196 (995)
.|++|.+.|+..
T Consensus 91 ~lg~g~~l~v~~a~~ 105 (114)
T 2cq2_A 91 DLGQKITLYLNFVEK 105 (114)
T ss_dssp TTSCEEECEEEEESC
T ss_pred ccCCCcEEEEEeccc
Confidence 789999998764
No 176
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.28 E-value=7.5e-12 Score=126.56 Aligned_cols=83 Identities=14% Similarity=0.158 Sum_probs=73.1
Q ss_pred ccCCEEEEeCCCCCC-ChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 107 IQRNLVYIIGLPINL-ADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 107 IQKNLVYVvGLP~~I-AeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
...+.|||.|||+.+ ++++|. ++|++||.|..|.|.++..+ .++|+|||+|.+.++|.+||..|||..++
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~---~~f~~~G~i~~v~i~~~~~g------~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALC---RALSAVHSPTFCQLACGQDG------QLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHH---HHTCSSSCCSEEEEEECSSC------CEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCccEEEEecCCcccCCHHHHH---HHhhCCCCeEEEEEEECCCC------CcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 456789999999997 566663 89999999999999887643 35789999999999999999999999999
Q ss_pred CeEEEEEeccCCc
Q 001928 186 GRPLRACFGTTKY 198 (995)
Q Consensus 186 GRvLRASfGTTKY 198 (995)
||.|+|.|+..|-
T Consensus 253 g~~l~v~~a~~~~ 265 (284)
T 3smz_A 253 GSHLRVSFCAPGP 265 (284)
T ss_dssp TEECEEEECCSSS
T ss_pred CeEEEEEEecCCC
Confidence 9999999998764
No 177
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.28 E-value=7.4e-12 Score=115.69 Aligned_cols=75 Identities=16% Similarity=0.413 Sum_probs=66.0
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||+|| .+++++|. ++|++||+|..|.|.+ .+++|||+|.+.++|.+||..|||..++|+
T Consensus 38 ~~~~lfVgnl--~~te~~L~---~~F~~~G~I~~v~i~~-----------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~ 101 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLR---GAFSPFGNIIDLSMDP-----------PRNCAFVTYEKMESADQAVAELNGTQVESV 101 (121)
T ss_dssp CCCEEEEECS--SCCHHHHH---HHHSTTCCCSCEEEET-----------TTTEEEEECSSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCEEEEcCC--CCCHHHHH---HHHHccCCEEEEEEeC-----------CCCEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3577999996 57777764 8999999999999851 357999999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.|+..+-
T Consensus 102 ~l~V~~a~~~~ 112 (121)
T 2bz2_A 102 QLKVNIARKQP 112 (121)
T ss_dssp BCEEEECCSSC
T ss_pred EEEEEEeCCCC
Confidence 99999998763
No 178
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.26 E-value=3.8e-12 Score=118.15 Aligned_cols=73 Identities=16% Similarity=0.315 Sum_probs=65.1
Q ss_pred HhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEEecc-CCcccccccCCCC
Q 001928 130 KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGT-TKYCHAWIRNMPC 208 (995)
Q Consensus 130 ~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRASfGT-TKYCs~FLRn~~C 208 (995)
.+.|++||+|.+|+|.++. ++|+|||+|.+.++|.+||+.|||..++||.|+|.|.. ++|+..|.....|
T Consensus 35 ~~~f~kfG~V~~v~i~~~~---------~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~~fp~a~~~ 105 (114)
T 3s6e_A 35 IEECNKHGGVIHIYVDKNS---------AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTA 105 (114)
T ss_dssp HHHHTTTTCCSEEEECTTC---------TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHHHCGGGSSC
T ss_pred HHHHhccCCEEEEEEecCC---------CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHHhCcccccc
Confidence 5899999999999997542 36889999999999999999999999999999999985 4999999988887
Q ss_pred CCC
Q 001928 209 SVP 211 (995)
Q Consensus 209 ~Np 211 (995)
+-+
T Consensus 106 ~~~ 108 (114)
T 3s6e_A 106 TQL 108 (114)
T ss_dssp CSC
T ss_pred Ccc
Confidence 653
No 179
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.1e-11 Score=111.83 Aligned_cols=80 Identities=16% Similarity=0.326 Sum_probs=64.3
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||+.+++++|. ++|++||+|. +++.++..+. ....++|+|||+|.+.++|.+||+.|++ ++|+.
T Consensus 8 ~~~lfVgnLp~~~te~~L~---~~F~~~G~i~-~~~~~~~~~~--~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~ 79 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEIT---ASFRRFGPLV-VDWPHKAESK--SYFPPKGYAFLLFQEESSVQALIDACLE--EDGKL 79 (114)
T ss_dssp CCCEEEECCCTTCCHHHHH---HHTTTTCCCC-EECTTSSSSC--CCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEE
T ss_pred CCEEEEcCCCCCCCHHHHH---HHHHhcCCEE-EEEeecCCCC--CCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcE
Confidence 3569999999999998874 8999999999 7776655321 0124688999999999999999999964 78888
Q ss_pred EEEEeccC
Q 001928 189 LRACFGTT 196 (995)
Q Consensus 189 LRASfGTT 196 (995)
|.+....+
T Consensus 80 ~~~~~~~~ 87 (114)
T 2dnl_A 80 YLCVSSPT 87 (114)
T ss_dssp EEEECCSS
T ss_pred EEeccCCC
Confidence 88876544
No 180
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.25 E-value=5.2e-12 Score=121.06 Aligned_cols=77 Identities=18% Similarity=0.347 Sum_probs=69.3
Q ss_pred CCEEEEeCCCC-CCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 109 RNLVYIIGLPI-NLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 109 KNLVYVvGLP~-~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
.+.|||+|||+ .+++++|. ++|++||+|.+|.|.+++ +++|||+|.+.++|.+||..+||..++|+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~---~~F~~~G~i~~v~i~~~~----------~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 69 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLF---ILFGVYGDVQRVKILFNK----------KENALVQMADGNQAQLAMSHLNGHKLHGK 69 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHH---HHHHTTCCCSEEECSTTC----------SSCCEEECTTTHHHHHHHHHHTTCCCSSC
T ss_pred CcEEEEeCCCcccCCHHHHH---HHHHhcCCEEEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCCCeecCe
Confidence 46899999999 89888874 899999999999997653 45799999999999999999999999999
Q ss_pred EEEEEeccCCc
Q 001928 188 PLRACFGTTKY 198 (995)
Q Consensus 188 vLRASfGTTKY 198 (995)
.|+|.|+..+.
T Consensus 70 ~l~v~~a~~~~ 80 (198)
T 1qm9_A 70 PIRITLSKHQN 80 (198)
T ss_dssp CCEEEECCCCS
T ss_pred EEEEEEecCCC
Confidence 99999988654
No 181
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.25 E-value=1.4e-11 Score=114.10 Aligned_cols=112 Identities=18% Similarity=0.367 Sum_probs=85.5
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC---C
Q 001928 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD---G 186 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld---G 186 (995)
..|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .+.++++|||+|.+.++|.+||+.++|..+. +
T Consensus 4 ~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 77 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLR---ELFEQYGAVYEINVLRDRSQN---PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH 77 (175)
T ss_dssp EEEEEESCCTTCCHHHHH---HHHHTTSCEEEEEEEEECSSS---SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred eEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEecCCCC---CCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCc
Confidence 469999999999999874 899999999999999876541 1135789999999999999999999998876 6
Q ss_pred eEEEEEeccCCcccccccCCCCCCCCCcccccCCCCCCCccHHHHHHhhcc
Q 001928 187 RPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (995)
Q Consensus 187 RvLRASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~tr 237 (995)
+.+++.+...+.-.. ....++|+--+. ...|.+||.....+
T Consensus 78 ~~~~~~~~~~~~~~~-------~~~~~l~v~nl~---~~~t~~~l~~~F~~ 118 (175)
T 3nmr_A 78 HPIQMKPADSEKNNA-------VEDRKLFIGMIS---KKCTENDIRVMFSS 118 (175)
T ss_dssp SCCEEEECGGGCCSC-------GGGSEEEEESCC---TTCCHHHHHHHHGG
T ss_pred cceEEcccccccccc-------CCCCeEEEcCCC---CcCCHHHHHHHHHh
Confidence 889988877543211 122345554443 34788888776544
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.25 E-value=1.3e-11 Score=124.62 Aligned_cols=75 Identities=12% Similarity=0.286 Sum_probs=67.9
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC-C
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD-G 186 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld-G 186 (995)
..+.|||.|||..+++++|. ++|++||.|.+|.|.+++ +++|||+|.+.++|.+||..|||..++ |
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~---~~F~~~G~i~~v~~~~~~----------~g~afV~f~~~~~A~~A~~~l~g~~~~~g 272 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLS---MLFNQFPGFKEVRLVPGR----------HDIAFVEFDNEVQAGAARDALQGFKITQN 272 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHH---HHHHhcCCeEEEEEecCC----------CcEEEEEeCCHHHHHHHHHHcCCcEeCCC
Confidence 45789999999999888874 899999999999998543 368999999999999999999999999 9
Q ss_pred eEEEEEecc
Q 001928 187 RPLRACFGT 195 (995)
Q Consensus 187 RvLRASfGT 195 (995)
|.|+|+|+.
T Consensus 273 ~~l~v~~ak 281 (282)
T 3pgw_A 273 NAMKISFAK 281 (282)
T ss_pred CEEEEEEec
Confidence 999999985
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.24 E-value=7.8e-12 Score=126.90 Aligned_cols=83 Identities=22% Similarity=0.473 Sum_probs=72.3
Q ss_pred ccCCEEEEeCCCCC-CChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 107 IQRNLVYIIGLPIN-LADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 107 IQKNLVYVvGLP~~-IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
.....|||.|||+. +++++|. ++|++||.|..|.|.++... +..++|+|||+|.+.++|.+|| .|||..++
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~---~~F~~~G~v~~v~i~~~~~~----tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~ 279 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLR---ESFEGFGSIEKINIPAGQKE----HSFNNCCAFMVFENKDSAERAL-QMNRSLLG 279 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHH---HHHGGGSCEEEEECCSCCC-------CCCEEEEEEESSHHHHHHHG-GGTTEEET
T ss_pred CCCceEEEECCCcccCCHHHHH---HHHhccCCeeEEEEEecCCc----CCCCceEEEEEeCCHHHHHHHH-HhcCCEEC
Confidence 34578999999999 9888874 89999999999999876540 1246899999999999999999 99999999
Q ss_pred CeEEEEEeccCC
Q 001928 186 GRPLRACFGTTK 197 (995)
Q Consensus 186 GRvLRASfGTTK 197 (995)
||.|+|.|++.|
T Consensus 280 g~~i~V~~a~~k 291 (292)
T 2ghp_A 280 NREISVSLADKK 291 (292)
T ss_dssp TEEEEEEECCCC
T ss_pred CcEEEEEEecCC
Confidence 999999999876
No 184
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.24 E-value=1.1e-11 Score=122.83 Aligned_cols=81 Identities=19% Similarity=0.357 Sum_probs=70.0
Q ss_pred cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 106 VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
.+...+|||+|||+.+++++|. ++|++||+|..|.|.++..+ ..+|+|||+|.+.++|.+||..++ ..++
T Consensus 106 ~~~~~~l~V~nLp~~~t~~~L~---~~F~~~G~v~~v~i~~~~~~------~~kG~aFVeF~~~e~A~~A~~~~~-~~~~ 175 (193)
T 2voo_A 106 DVKNRSVYIKGFPTDATLDDIK---EWLEDKGQVLNIQMRRTLHK------AFKGSIFVVFDSIESAKKFVETPG-QKYK 175 (193)
T ss_dssp HHHHTEEEEECCCTTCCHHHHH---HHHTTSCCEEEEEEEECTTC------CEEEEEEEEESSHHHHHHHHHCTT-CEET
T ss_pred ccccCEEEecCCCCcCCHHHHH---HHHhcCCCEEEEEEEECCCC------CcccEEEEEECCHHHHHHHHHhCC-CeEC
Confidence 3456889999999999888874 89999999999999987643 357999999999999999998765 5999
Q ss_pred CeEEEEEeccC
Q 001928 186 GRPLRACFGTT 196 (995)
Q Consensus 186 GRvLRASfGTT 196 (995)
||.|+|.++..
T Consensus 176 Gr~l~V~~~~~ 186 (193)
T 2voo_A 176 ETDLLILFKDD 186 (193)
T ss_dssp TEECEEEETTT
T ss_pred CEEEEEEEhHH
Confidence 99999998654
No 185
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.24 E-value=1.5e-11 Score=111.67 Aligned_cols=64 Identities=14% Similarity=0.293 Sum_probs=55.9
Q ss_pred HhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEEeccC
Q 001928 130 KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTT 196 (995)
Q Consensus 130 ~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRASfGTT 196 (995)
.+.|++||+|.+|+|.+++.+. ...++|+|||+|.+.++|.+||++|||..++||.|+|.|...
T Consensus 33 ~~~f~k~G~V~~v~i~~~~~~~---~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 33 RDECSKYGLVKSIEIPRPVDGV---EVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHTTSCEEEEECCCCBTTB---CCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHccCCEEEEEEeccCCCC---CcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 4899999999999998876431 123579999999999999999999999999999999999754
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.23 E-value=1.5e-11 Score=122.30 Aligned_cols=79 Identities=18% Similarity=0.331 Sum_probs=70.4
Q ss_pred ccCCEEEEeCCCC-CCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 107 IQRNLVYIIGLPI-NLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 107 IQKNLVYVvGLP~-~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
-..+.|||+|||+ .+++++|. ++|++||+|.+|.|.++. +++|||+|.+.++|.+||..+||..++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~---~~F~~~G~i~~v~i~~~~----------~g~afV~F~~~~~A~~Ai~~l~g~~~~ 98 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLF---ILFGVYGDVQRVKILFNK----------KENALVQMADGNQAQLAMSHLNGHKLH 98 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHH---HHHHHHTCEEEEEECCTT----------SCCEEEEESCHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEEeCCCcccCCHHHHH---HHHHhCCCeEEEEEEECC----------CCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 3467899999999 89888874 899999999999998754 457999999999999999999999999
Q ss_pred CeEEEEEeccCCc
Q 001928 186 GRPLRACFGTTKY 198 (995)
Q Consensus 186 GRvLRASfGTTKY 198 (995)
|+.|+|.|+..+.
T Consensus 99 g~~l~v~~a~~~~ 111 (229)
T 2adc_A 99 GKPIRITLSKHQN 111 (229)
T ss_dssp SSBCEEECCSCCC
T ss_pred CeEEEEEEecCcc
Confidence 9999999987653
No 187
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=2.4e-11 Score=109.67 Aligned_cols=77 Identities=18% Similarity=0.301 Sum_probs=63.1
Q ss_pred cCCEEEEeCCCCCCC-----------hHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHH
Q 001928 108 QRNLVYIIGLPINLA-----------DEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCI 176 (995)
Q Consensus 108 QKNLVYVvGLP~~IA-----------eEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAI 176 (995)
....|+|.||..... +++ | .++|++||+|.+|.| .++ .++|+|||+|.+.++|.+||
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~-l--~~~f~~~G~v~~v~i-~~~--------~~~G~afV~f~~~~~A~~Ai 81 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIRED-L--RVECSKFGQIRKLLL-FDR--------HPDGVASVSFRDPEEADYCI 81 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHH-H--HHHGGGTSCCSEEEE-ETT--------CTTCEEEEECSCHHHHHHHH
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHH-H--HHHHHccCCEeEEEE-ecC--------CCCEEEEEEECCHHHHHHHH
Confidence 466799999944322 234 4 389999999999977 333 14789999999999999999
Q ss_pred HHhCCCCCCCeEEEEEeccC
Q 001928 177 QSVHSYILDGRPLRACFGTT 196 (995)
Q Consensus 177 qaLNG~~LdGRvLRASfGTT 196 (995)
..|||..++||.|+|.|+..
T Consensus 82 ~~lng~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 82 QTLDGRWFGGRQITAQAWDG 101 (112)
T ss_dssp HHSTTCEETTEECEEEECCS
T ss_pred HHcCCCEECCcEEEEEEeCC
Confidence 99999999999999999765
No 188
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.22 E-value=1.3e-11 Score=128.29 Aligned_cols=76 Identities=13% Similarity=0.333 Sum_probs=65.7
Q ss_pred cCCEEEEeCCCCCC---------ChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHH
Q 001928 108 QRNLVYIIGLPINL---------ADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQS 178 (995)
Q Consensus 108 QKNLVYVvGLP~~I---------AeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqa 178 (995)
+..+|||+||+..+ .+++ | .++|++||+|.+|.|.+. +++|||+|.+.++|+.||.+
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~-L--~~~F~~fG~I~~v~v~~~-----------kG~AFV~F~~~~~Ae~A~~a 198 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESR-I--RFVFSRLGDIDRIRYVES-----------KNCGFVKFKYQANAEFAKEA 198 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHH-H--HHHHHTTSCEEEEEEEGG-----------GTEEEEEESSHHHHHHHHHH
T ss_pred CCceeecCCCChhhhcccccccCcHHH-H--HHHHHccCCEEEEEEECC-----------CCEEEEEeCCHHHHHHHHHH
Confidence 45789999999998 3555 4 389999999999999742 57899999999999999999
Q ss_pred hCCCCC------------CCeEEEEEeccCC
Q 001928 179 VHSYIL------------DGRPLRACFGTTK 197 (995)
Q Consensus 179 LNG~~L------------dGRvLRASfGTTK 197 (995)
|+|..| +|+.|+|.||+.+
T Consensus 199 m~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 199 MSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred hCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 999999 8999999999865
No 189
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.22 E-value=3e-12 Score=115.88 Aligned_cols=75 Identities=20% Similarity=0.404 Sum_probs=61.3
Q ss_pred EeCCCCCCChHHHHHh--------Hhhh-cCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC
Q 001928 114 IIGLPINLADEDLLQR--------KEYF-GQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (995)
Q Consensus 114 VvGLP~~IAeEDLLRk--------~EyF-GQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L 184 (995)
+.||+..+.+++|-+. .+.| ++||+|.+|.|.++..+ .++|+|||+|.+.++|.+||..|||..+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~------~~~G~~fV~f~~~~~A~~A~~~lng~~~ 93 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGD------HLVGNVYVKFRREEDAEKAVIDLNNRWF 93 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSS------SSEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCC------CccEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 5677777766665210 2455 99999999999876543 3689999999999999999999999999
Q ss_pred CCeEEEEEec
Q 001928 185 DGRPLRACFG 194 (995)
Q Consensus 185 dGRvLRASfG 194 (995)
+||.|+|.|.
T Consensus 94 ~Gr~i~v~~s 103 (104)
T 1jmt_A 94 NGQPIHAELS 103 (104)
T ss_dssp TTEECCEEEC
T ss_pred CCEEEEEEEc
Confidence 9999999985
No 190
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=6.1e-12 Score=107.91 Aligned_cols=74 Identities=20% Similarity=0.359 Sum_probs=62.4
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCC--CCC
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSY--ILD 185 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~--~Ld 185 (995)
..+.|||+|||+.+++++|. ++|++||+|..|.|.++ ++++|||+|.+.++|++| +|. .+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~----------~~g~afV~f~~~~~a~~~----~~~~~~~~ 66 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELR---EFFSQYGDVMDVFIPKP----------FRAFAFVTFADDQIAQSL----CGEDLIIK 66 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHH---HHSTTTSCCCEEECCSS----------CCSCCEEECSCHHHHHHT----TTCEEEET
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHHcCCeeEEEEecC----------CCCEEEEEECCHHHHHHH----hcCCceeC
Confidence 35789999999999998874 89999999999998753 357899999999999764 554 448
Q ss_pred CeEEEEEeccCCc
Q 001928 186 GRPLRACFGTTKY 198 (995)
Q Consensus 186 GRvLRASfGTTKY 198 (995)
|+.|+|.++..|-
T Consensus 67 g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 67 GISVHISNAEPKH 79 (88)
T ss_dssp TEEEEEECCCCCC
T ss_pred CEEEEEEecCCCC
Confidence 9999999998764
No 191
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.21 E-value=1.3e-11 Score=114.12 Aligned_cols=108 Identities=18% Similarity=0.383 Sum_probs=83.1
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||+|||+.+++++|. ++|++||+|..|.|.+++.+. .++|+|||+|.+.++|.+||.. +..++|+.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~ 72 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLR---EYFGKYGTVTDLKIMKDPATG-----RSRGFGFLSFEKPSSVDEVVKT--QHILDGKV 72 (167)
T ss_dssp GGEEEECSCCTTCCHHHHH---HHHTTTCCEEEEECCCCTTTS-----SCCSCEEEEESSTHHHHHHHHS--CCEETTEE
T ss_pred CcEEEEeCCCCCCCHHHHH---HHHHhCCCEEEEEEEECCCCC-----CccceEEEEEccHHHHHHHHhc--ccccCCeE
Confidence 4679999999999998874 899999999999998876432 3678999999999999999994 67899999
Q ss_pred EEEEeccCCcccccccCCCCCCCCCcccccCCCCCCCccHHHHHHhhcc
Q 001928 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (995)
Q Consensus 189 LRASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~tr 237 (995)
|++.++..+--. ....++|+.-+.. ..|.+||......
T Consensus 73 i~v~~~~~~~~~--------~~~~~l~V~nlp~---~~t~~~l~~~F~~ 110 (167)
T 2cjk_A 73 IDPKRAIPRDEQ--------DKTGKIFVGGIGP---DVRPKEFEEFFSQ 110 (167)
T ss_dssp CCCEECCCHHHH--------HHCEEEEEEEECT---TCCHHHHHHHHHT
T ss_pred cccccccchhhc--------cCCCeEEECCCCC---CCCHHHHHHHHHh
Confidence 999988654211 1123455544442 5688888765543
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.21 E-value=1.2e-11 Score=118.46 Aligned_cols=76 Identities=18% Similarity=0.320 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCC-ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC-C
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYG-KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD-G 186 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYG-KIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld-G 186 (995)
.+.|||.|||..+++++|. ++|++|| +|..|.|.++ .+++|||+|.+.++|.+||..|||..++ |
T Consensus 120 ~~~l~v~nl~~~~~~~~l~---~~f~~~G~~v~~v~i~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 186 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLK---VLFSSNGGVVKGFKFFQK----------DRKMALIQMGSVEEAVQALIDLHNHDLGEN 186 (198)
T ss_dssp CCEEEECCCCTTCCHHHHH---HHHHHTTSCCCEEEESST----------TSSCEEEECSSHHHHHHHHHHHTSSCCSSC
T ss_pred ccEEEEeCCCCCCCHHHHH---HHHHHcCCCceEEEEEeC----------CCcEEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 6789999999999988874 8999999 9999999643 2468999999999999999999999999 9
Q ss_pred eEEEEEeccCC
Q 001928 187 RPLRACFGTTK 197 (995)
Q Consensus 187 RvLRASfGTTK 197 (995)
|.|+|.|++.+
T Consensus 187 ~~l~v~~a~~~ 197 (198)
T 1qm9_A 187 HHLRVSFSKST 197 (198)
T ss_dssp CSCCEEEECCC
T ss_pred CeEEEEeeccc
Confidence 99999999864
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.21 E-value=2.5e-11 Score=123.12 Aligned_cols=102 Identities=25% Similarity=0.388 Sum_probs=83.6
Q ss_pred ccccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC
Q 001928 105 RVIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (995)
Q Consensus 105 RVIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L 184 (995)
...+.+.|||+|||+.+++++|. ++|++||+|..|.|.++ +|+|||+|.+.++|.+||..+||..+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~-----------kg~afV~f~~~~~A~~A~~~l~g~~i 83 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFK---RLFERYGEPSEVFINRD-----------RGFGFIRLESRTLAEIAKAELDGTIL 83 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHH---HHTGGGCCCSEEEEETT-----------TTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHH---HHHHhcCCEEEEEEeCC-----------CcEEEEEECCHHHHHHHHHHcCCcEE
Confidence 35567889999999999998874 89999999999999642 47899999999999999999999999
Q ss_pred CCeEEEEEeccCCcccccccCCCCCCCCCcccccCCCCCCCccHHHHHHhhcc
Q 001928 185 DGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (995)
Q Consensus 185 dGRvLRASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~tr 237 (995)
+|+.|+|.|++... ++|+..+. ...|.++|......
T Consensus 84 ~g~~l~v~~a~~~~--------------~l~v~nl~---~~~t~~~l~~~F~~ 119 (261)
T 3sde_A 84 KSRPLRIRFATHGA--------------ALTVKNLS---PVVSNELLEQAFSQ 119 (261)
T ss_dssp TTEECEEEECCCSS--------------EEEEESCC---TTCCHHHHHHHHGG
T ss_pred CCceeEeeecccCC--------------cccccCCC---CCCCHHHHHHHHHh
Confidence 99999999987532 34444443 24678888766544
No 194
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.20 E-value=4.1e-11 Score=121.19 Aligned_cols=113 Identities=16% Similarity=0.269 Sum_probs=89.6
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeE
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRP 188 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRv 188 (995)
...|||.|||+.+++++|. ++|++||.|..|.|.++.... .++|+|||+|.+.++|.+||..+||..++|+.
T Consensus 95 ~~~l~v~nlp~~~t~~~l~---~~f~~~G~i~~~~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 166 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFE---ELVRPFGSLERCFLVYSERTG-----QSKGYGFAEYMKKDSAARAKSDLLGKPLGPRT 166 (284)
T ss_dssp SCEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEcCCCCcCCHHHHH---HHHHhcCCeeEEEEEeeCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 4689999999999998874 899999999999998776432 35789999999999999999999999999999
Q ss_pred EEEEeccCCcccccccCCCCCCCCCcccccCCCCCCCc-cHHHHHHhhcc
Q 001928 189 LRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSF-TKDEIVSAFTR 237 (995)
Q Consensus 189 LRASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~Dsf-TKeEm~s~~tr 237 (995)
|+|.|+..+-= ...-....|+|+.-+.. .+ |.+||......
T Consensus 167 i~v~~a~~~~~-----~~~~~~~~~l~v~nlp~---~~~~~~~l~~~f~~ 208 (284)
T 3smz_A 167 LYVHWTDAGQL-----TPALLHSRCLCVDRLPP---GFNDVDALCRALSA 208 (284)
T ss_dssp CEEEECCGGGC-----CTTTTSCSEEEEECCCT---TCCCHHHHHHHTCS
T ss_pred EEEEECCCCCC-----CcccCCccEEEEecCCc---ccCCHHHHHHHhhC
Confidence 99999987531 11223345677666653 33 77888766554
No 195
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.19 E-value=3.2e-11 Score=122.45 Aligned_cols=102 Identities=19% Similarity=0.329 Sum_probs=80.8
Q ss_pred ccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 107 IQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 107 IQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
.....|||+|||+.+++++|. ++|++||+|..|.|.++..+ .+++|||+|.+.++|.+||. +||..+.|
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~~-------~~g~afV~f~~~~~A~~A~~-~~~~~~~g 107 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVY---KYFKHCGPIIHVDVADSLKK-------NFRFARIEFARYDGALAAIT-KTHKVVGQ 107 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHH---HHHGGGSCEEEEEEEECTTS-------SSEEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHH---HHHHhcCCeEEEEEEECCCC-------CcEEEEEEECCHHHHHHHHH-hCCcEeCC
Confidence 346789999999999998874 89999999999999987643 36899999999999999995 99999999
Q ss_pred eEEEEEeccCCcccccccCCCCCCCCCcccccCCCCCCCccHHHHHHhhcc
Q 001928 187 RPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (995)
Q Consensus 187 RvLRASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~tr 237 (995)
+.|++.++. ..++|+.-+.. ..|.++|......
T Consensus 108 ~~i~v~~~~---------------~~~l~v~nlp~---~~t~~~l~~~f~~ 140 (292)
T 2ghp_A 108 NEIIVSHLT---------------ECTLWMTNFPP---SYTQRNIRDLLQD 140 (292)
T ss_dssp EECEEEECC---------------SCEEEEECCCT---TCCHHHHHHHHHH
T ss_pred cEEEEEECC---------------CCEEEEECCCC---CCCHHHHHHHHHH
Confidence 999999862 33444443332 3688888765544
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.19 E-value=3.7e-11 Score=119.51 Aligned_cols=76 Identities=18% Similarity=0.320 Sum_probs=68.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCC-ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC-C
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYG-KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD-G 186 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYG-KIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld-G 186 (995)
.+.|||.|||+.+++++|. ++|++|| +|..|.|..+ .+++|||+|.+.++|.+||..|||..++ |
T Consensus 151 ~~~l~V~nlp~~~t~~~l~---~~f~~~G~~i~~v~i~~~----------~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g 217 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLK---VLFSSNGGVVKGFKFFQK----------DRKMALIQMGSVEEAVQALIDLHNHDLGEN 217 (229)
T ss_dssp CSEEEEECCCTTCCHHHHH---HHHHTTSCCEEEEEECSS----------STTCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCEEEEeCCCccCCHHHHH---HHHHHcCCCeeEEEEEEC----------CCcEEEEEECCHHHHHHHHHHHCCCccCCC
Confidence 5789999999999988874 8999999 9999999542 2468999999999999999999999999 9
Q ss_pred eEEEEEeccCC
Q 001928 187 RPLRACFGTTK 197 (995)
Q Consensus 187 RvLRASfGTTK 197 (995)
|.|+|+|++.+
T Consensus 218 ~~l~v~~a~~~ 228 (229)
T 2adc_A 218 HHLRVSFSKST 228 (229)
T ss_dssp CBCEEEECSSC
T ss_pred CeEEEEEecCC
Confidence 99999999864
No 197
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.16 E-value=1.1e-11 Score=116.17 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=82.0
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCe
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGR 187 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGR 187 (995)
....|||+|||+.+++++|. ++|.+||.|..+.|.....+ .++++|||+|.+.++|.+|| .+||..+.||
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~---~~f~~~g~~~~~~~~~~~~~------~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 81 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELK---VAISELFAKNDLAVVDVRTG------TNRKFGYVDFESAEDLEKAL-ELTGLKVFGN 81 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHH---HHHHHHHHHHTCCCCEEEEE------TTTTEEEEEESSHHHHHHHH-HGGGEEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHH---HHHHHhCCcceEEEEECCCC------ccccEEEEEECCHHHHHHHH-hcCCCEeCCe
Confidence 36789999999999998874 89999998877333222211 35789999999999999999 5999999999
Q ss_pred EEEEEeccCCcccccccCCCCCCCCCcccccCCCCCCCccHHHHHHhhcc
Q 001928 188 PLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (995)
Q Consensus 188 vLRASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~tr 237 (995)
.|+|.++..+-- ..-....++|+.-+.. ..|.+||.....+
T Consensus 82 ~l~v~~~~~~~~------~~~~~~~~l~v~nlp~---~~t~~~l~~~F~~ 122 (175)
T 1fje_B 82 EIKLEKPKGRDS------KKVRAARTLLAKNLSF---NITEDELKEVFED 122 (175)
T ss_dssp EEEEECCCCSSC------STTGGGGEEEEESCCS---SCCHHHHHHHCTT
T ss_pred EEEEecCCCccc------cccccCCEEEEeCCCC---CCCHHHHHHHHHh
Confidence 999999887521 1112234566555542 4688888765544
No 198
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.14 E-value=3.3e-11 Score=116.73 Aligned_cols=79 Identities=15% Similarity=0.278 Sum_probs=67.9
Q ss_pred CEEEEeCC----CCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCC----HHH----HHHHHH
Q 001928 110 NLVYIIGL----PINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR----EDD----AIRCIQ 177 (995)
Q Consensus 110 NLVYVvGL----P~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsr----kED----A~rAIq 177 (995)
+.|||+|| |+.+++++| .+||++||+|..+.+..++.+. .++|++||+|.+ +++ |.+||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~L---k~~Fs~fGeV~~~~li~Dp~Tg-----~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISI---KNYFKKYGEISHFEAFNDPNSA-----LPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHH---HHHHHTTSCCSEEEEEECTTTC-----CEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHH---HHHHHhcCCeEEEEEEecCCCC-----ceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 56999999 999988886 3999999999999999998764 578999999996 444 899999
Q ss_pred --HhCCCCCCCeEEEEEeccC
Q 001928 178 --SVHSYILDGRPLRACFGTT 196 (995)
Q Consensus 178 --aLNG~~LdGRvLRASfGTT 196 (995)
.+||..++||.|||.+-..
T Consensus 75 ~~~lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 75 KHESSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp HTTTTCEEETTEEEEEEECCT
T ss_pred HhhhcCCeecCcEEEEEECcc
Confidence 8999999999999996543
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.13 E-value=1.3e-10 Score=110.21 Aligned_cols=111 Identities=14% Similarity=0.319 Sum_probs=81.7
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCC-----------ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHH
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYG-----------KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQ 177 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYG-----------KIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIq 177 (995)
...|||+|||+.+++++|. ++|++|| .|.++.+.+ .+++|||+|.+.++|.+||
T Consensus 4 ~~~l~V~nLp~~~te~~l~---~~F~~~g~i~g~~~~~~~~v~~~~~~~-----------~~g~afV~F~~~~~A~~Al- 68 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMM---DFFNAQMRLGGLTQAPGNPVLAVQINQ-----------DKNFAFLEFRSVDETTQAM- 68 (198)
T ss_dssp CCEEEEESCCTTCCHHHHH---HHHHHHHHHHTCCSSSSCSEEEEEEET-----------TTTEEEEEESCSHHHHHHG-
T ss_pred eeEEEEcCCCCCCCHHHHH---HHHHHHHhhcccccCCCCceEEeEecC-----------CCCEEEEEeCCHHHHHHHH-
Confidence 4679999999999998874 8999995 555555532 3679999999999999999
Q ss_pred HhCCCCCCCeEEEEEeccCCccccc------------ccCCCCCCCCCcccccCCCCCCCccHHHHHHhhcc
Q 001928 178 SVHSYILDGRPLRACFGTTKYCHAW------------IRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (995)
Q Consensus 178 aLNG~~LdGRvLRASfGTTKYCs~F------------LRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~tr 237 (995)
.+||..++|+.|+|.++..+-...- ..........++|+.-+.. ..|.+||......
T Consensus 69 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~---~~~~~~l~~~f~~ 137 (198)
T 2yh0_A 69 AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPN---YLNDDQVKELLTS 137 (198)
T ss_dssp GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCT---TCCHHHHHHHHHT
T ss_pred HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCC---CCCHHHHHHHHHH
Confidence 8999999999999999876532211 1111223446667665554 5688888765543
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.12 E-value=3.2e-11 Score=112.40 Aligned_cols=83 Identities=17% Similarity=0.336 Sum_probs=62.8
Q ss_pred CEEEEeCCCC--CCC---hHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC
Q 001928 110 NLVYIIGLPI--NLA---DEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (995)
Q Consensus 110 NLVYVvGLP~--~IA---eEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L 184 (995)
..|++.||-. .+. ++|| .+.|++||+|.+|+|.+++.+. ...+..+|+|||+|.+.++|.+||++|||..+
T Consensus 21 ~vl~L~Nm~~~~el~ddleedl---~eef~k~G~V~~v~I~~~~~~~-~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 21 TVMVLRNMVDPKDIDDDLEGEV---TEECGKFGAVNRVIIYQEKQGE-EEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp CEEEEESCSCGGGCCTTHHHHH---HHHHTTTSCEEEEEEEEEEESS-STTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHH---HHHHhccCCEeEEEEeecCCCc-ccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 3466777632 221 3454 4899999999999999875421 00112468999999999999999999999999
Q ss_pred CCeEEEEEeccC
Q 001928 185 DGRPLRACFGTT 196 (995)
Q Consensus 185 dGRvLRASfGTT 196 (995)
+||.|+|.|..-
T Consensus 97 ~GR~i~v~~~~~ 108 (118)
T 3ue2_A 97 AGRKVVAEVYDQ 108 (118)
T ss_dssp TTEECEEEEECH
T ss_pred CCcEEEEEEcCh
Confidence 999999998643
No 201
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.12 E-value=9.6e-11 Score=108.82 Aligned_cols=104 Identities=15% Similarity=0.378 Sum_probs=80.8
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCC----C-------ceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHH
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQY----G-------KVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCI 176 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQY----G-------KIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAI 176 (995)
+...|||+|||+.+++++|. ++|++| | .|.++.+.+ .+++|||+|.+.++|.+||
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~---~~F~~~g~~~g~~~~~~~~v~~~~~~~-----------~~g~afV~f~~~~~A~~A~ 68 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMM---DFFNAQMRLGGLTQAPGNPVLAVQINQ-----------DKNFAFLEFRSVDETTQAM 68 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHH---HHHHHHHHHTTCCSSSSCSEEEEEEET-----------TTTEEEEEESSHHHHHHHG
T ss_pred cccEEEEcCCCcccCHHHHH---HHHHHHhhhcccccCCCCceeeeEecC-----------CCCEEEEEeCCHHHHHHHH
Confidence 35789999999999999874 899999 6 667766643 3578999999999999999
Q ss_pred HHhCCCCCCCeEEEEEeccCCcccccccCCCCCCCCCcccccCCCCCCCccHHHHHHhhcc
Q 001928 177 QSVHSYILDGRPLRACFGTTKYCHAWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIVSAFTR 237 (995)
Q Consensus 177 qaLNG~~LdGRvLRASfGTTKYCs~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~s~~tr 237 (995)
.+||..++|+.|++.++..+-- -....++|+..+.. ..|.+||.....+
T Consensus 69 -~~~~~~~~g~~i~v~~~~~~~~--------~~~~~~l~v~nlp~---~~t~~~l~~~f~~ 117 (172)
T 2g4b_A 69 -AFDGIIFQGQSLKIRRPHDYQP--------LPGAHKLFIGGLPN---YLNDDQVKELLTS 117 (172)
T ss_dssp -GGTTCEETTEECEEECCSSCCC--------CTTTTCEEEECCCT---TCCHHHHHHHHHT
T ss_pred -HhCCcEecCceeeecCCcccCC--------CCCCCEEEEEcCCC---cCCHHHHHHHHHh
Confidence 8999999999999998765421 12245666655543 5688888765543
No 202
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.06 E-value=2.4e-10 Score=115.92 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=69.4
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCC-CCCC-
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHS-YILD- 185 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG-~~Ld- 185 (995)
....|||.|||+.+++++|. ++|++||+|.+|.|.++..+ .++|+|||+|.+.++|.+||..||| ..+.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~---~~F~~~G~i~~v~i~~~~~g------~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 165 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLE---QAFSQFGPVEKAVVVVDDRG------RATGKGFVEFAAKPPARKALERCGDGAFLLT 165 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHH---HHHGGGSCEEEEEEEEETTS------CEEEEEEEEESSHHHHHHHHHHHHHSCEESS
T ss_pred cCCcccccCCCCCCCHHHHH---HHHHhcCCeEEEEeeeCCCC------CcCcEEEEEeCCHHHHHHHHHHhcCCeEEec
Confidence 35789999999999888874 89999999999999988543 3578999999999999999999954 4444
Q ss_pred --CeEEEEEeccCC
Q 001928 186 --GRPLRACFGTTK 197 (995)
Q Consensus 186 --GRvLRASfGTTK 197 (995)
||.|+|.++..+
T Consensus 166 ~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 166 TTPRPVIVEPMEQF 179 (261)
T ss_dssp SSCCBCEEEECCCE
T ss_pred CCCceEEEeecccc
Confidence 999999998754
No 203
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.05 E-value=1.4e-10 Score=115.47 Aligned_cols=69 Identities=14% Similarity=0.346 Sum_probs=60.6
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCce--EEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKV--LKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKI--iKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
...|||.|||+.+++++|. ++|++||.| .+|+|..+.. ..+++|||+|.+.++|.+||..|||..++|
T Consensus 123 ~~~l~v~NLp~~~t~~~L~---~~F~~~G~v~~~~v~~~~~~~-------~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g 192 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFF---EICDELGVKRPTSVKVFSGKS-------ERSSSGLLEWDSKSDALETLGFLNHYQMKN 192 (205)
T ss_dssp CSEEEEEEECTTCCHHHHH---HHHHHHTCCCCSEEEECSCCS-------SSSEEEEEECSSHHHHHHHHHHHTTCEECC
T ss_pred cceEEEeCCCCCCCHHHHH---HHHHhcCCcceEEEEEEcCCC-------CCceEEEEEeCCHHHHHHHHHHhCCCCccC
Confidence 3579999999999988863 899999999 8999876642 135899999999999999999999999999
Q ss_pred e
Q 001928 187 R 187 (995)
Q Consensus 187 R 187 (995)
+
T Consensus 193 ~ 193 (205)
T 3tyt_A 193 P 193 (205)
T ss_dssp S
T ss_pred C
Confidence 8
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.5e-09 Score=98.68 Aligned_cols=65 Identities=18% Similarity=0.289 Sum_probs=54.4
Q ss_pred CCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEEeccCCc
Q 001928 119 INLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKY 198 (995)
Q Consensus 119 ~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRASfGTTKY 198 (995)
..+++++|. ++|++||+|.+|.|.+ .++|+|||+|.+.++|.+||+.++| +.|+.|+|.|+..+-
T Consensus 27 ~~~te~~L~---~~F~~~G~V~~v~i~~----------~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLL---RLLQKYGEVLNLVLSS----------KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHH---HHHHTTSCEEEEEEES----------SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHH---HHHHhcCCEEEEEEcc----------CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 456666653 8999999999999972 1468999999999999999999655 689999999988753
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.90 E-value=1.4e-09 Score=118.15 Aligned_cols=83 Identities=13% Similarity=0.207 Sum_probs=66.4
Q ss_pred Cccccc--CCEEEEeC--CCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHH
Q 001928 103 NVRVIQ--RNLVYIIG--LPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQS 178 (995)
Q Consensus 103 nVRVIQ--KNLVYVvG--LP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqa 178 (995)
+|++.- .+.|||+| |++.+++|+|. ++|++||+|.+|+|.+ .+++|||+|.+.|||++||++
T Consensus 10 ~v~~~~~ps~~l~VgN~gl~~~~te~~L~---~~F~~~G~V~~v~~~~-----------~kgfaFV~f~~~~~A~~Ai~~ 75 (345)
T 3tht_A 10 GIETVSYATQSLVVANGGLGNGVSRNQLL---PVLEKCGLVDALLMPP-----------NKPYSFARYRTTEESKRAYVT 75 (345)
T ss_dssp TCCCCSSCCSEEEEETCSGGGTCCHHHHH---HHHHTTSCEEEEECCT-----------TCSEEEEEESSHHHHHHHHHH
T ss_pred CceecCCCCCEEEEEcCCCCCCCCHHHHH---HHHHhcCCeEEEEEeC-----------CCCEEEEEECCHHHHHHHHHH
Confidence 455432 46799987 68899888874 8999999999988853 257999999999999999999
Q ss_pred hCCCCCC---Ce--EEEEEeccCCcc
Q 001928 179 VHSYILD---GR--PLRACFGTTKYC 199 (995)
Q Consensus 179 LNG~~Ld---GR--vLRASfGTTKYC 199 (995)
|||..+. |+ +|.++|..+--+
T Consensus 76 lnG~~~~~~~g~~~~ly~~~~~~~~~ 101 (345)
T 3tht_A 76 LNGKEVVDDLGQKITLYLNFVEKVQW 101 (345)
T ss_dssp TTTCEEECTTSCEEECEEEECSSEEE
T ss_pred hCCCccccccCCceEEEEEEeecccc
Confidence 9999883 55 688899854333
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.78 E-value=8.6e-09 Score=102.08 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=55.4
Q ss_pred HhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEEecc
Q 001928 130 KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGT 195 (995)
Q Consensus 130 ~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRASfGT 195 (995)
.+.|++||+|.+|.|.++..+.. .+...+|++||+|.+.++|.+||++|||..++||.|+|.|..
T Consensus 147 ~~e~~~~G~v~~~~v~~~~~~~~-~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 147 TEECGKFGAVNRVIIYQEKQGEE-EDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHTTTSCEEEEEEEEEECCSS-TTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHccCCeEEEEEecCCCCcc-cCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 48999999999999987654321 122467999999999999999999999999999999999964
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=4.2e-08 Score=89.63 Aligned_cols=55 Identities=13% Similarity=0.326 Sum_probs=50.0
Q ss_pred HhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEEeccCCc
Q 001928 130 KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKY 198 (995)
Q Consensus 130 ~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRASfGTTKY 198 (995)
.+.|++||+|+.|+|..++ +||||.+.++|.+||. |||..++||.|||.+.|+..
T Consensus 33 ~~~F~~~G~Vi~vr~~~d~-------------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 33 LQQFASFGEVILIRFVEDK-------------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPSG 87 (91)
T ss_dssp HHHHHTTCCEEEEEECSSS-------------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCSS
T ss_pred HHHHHhCCCeEEEEEecCC-------------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCCc
Confidence 4899999999999997542 7999999999999999 99999999999999999764
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=3.6e-07 Score=86.79 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=65.0
Q ss_pred CCcccccCCEEEEeCCCCC-CChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCC-HHHHHHHHHHh
Q 001928 102 TNVRVIQRNLVYIIGLPIN-LADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSR-EDDAIRCIQSV 179 (995)
Q Consensus 102 anVRVIQKNLVYVvGLP~~-IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsr-kEDA~rAIqaL 179 (995)
-.+--...-+|||+||++. ++.++| .++|.+||+|..|.+.++.. .|||+|.+ .++|.+||..+
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredL---ke~F~~~G~V~~Vd~~~g~~-----------tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDL---HILFSNHGEIKWIDFVRGAK-----------EGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHH---HHHTCSSCCEEEEECCTTCS-----------EEEEEESSCHHHHHHHHHHT
T ss_pred CcccccCCeEEEEecCCCCcCCHHHH---HHHHHhcCCEEEEEEecCCC-----------EEEEEECCChHHHHHHHHHh
Confidence 3444555778999999999 888886 39999999999999976542 48999999 89999999999
Q ss_pred --CCCCCCCeEEEEEe
Q 001928 180 --HSYILDGRPLRACF 193 (995)
Q Consensus 180 --NG~~LdGRvLRASf 193 (995)
+|..|.|..+++..
T Consensus 77 n~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 77 NNGNLQLRNKEVTWEV 92 (121)
T ss_dssp TTSCBCTTSSSEEEEE
T ss_pred hcCCcEEeCcEEEEEE
Confidence 47889998888763
No 209
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=2.9e-07 Score=84.73 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=47.2
Q ss_pred HhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEEecc
Q 001928 130 KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGT 195 (995)
Q Consensus 130 ~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRASfGT 195 (995)
.+.|.+||+|+.|++..+ .+||||.+.++|.+||. |||..+.||.|||++-+
T Consensus 42 ~~~F~~~G~Vilvr~v~d-------------~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 42 MQTLGSYGTIVLVRINQG-------------QMLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHSCCSEEEEETT-------------EEEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred HHHHHHCCCEEEEEEecC-------------cEEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 389999999999998754 28999999999999998 99999999999999755
No 210
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=2.1e-06 Score=73.65 Aligned_cols=60 Identities=23% Similarity=0.551 Sum_probs=47.4
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~ 66 (995)
+++..||+|.+.++..+....-.+||+.+|..|+.++++. ......||-||+++....+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~---~~~~~~CP~Cr~~~~~~~i~ 72 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLAS---SINGVRCPFCSKITRITSLT 72 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHH---CSSCBCCTTTCCCBCCSSTT
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHc---CCCCcCCCCCCCcccchhHH
Confidence 3457899999999877665666689999999999999752 12357999999998776554
No 211
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.77 E-value=1.6e-05 Score=62.95 Aligned_cols=53 Identities=21% Similarity=0.574 Sum_probs=43.1
Q ss_pred cccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccc
Q 001928 3 DKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (995)
Q Consensus 3 De~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYd 61 (995)
++++..||+|++++...+.....-+||+.+|..|+.+.++. ...||-||+++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 2 SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE------GYRCPLCSGPSS 54 (55)
T ss_dssp CSCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH------TCCCTTSCCSSC
T ss_pred CCCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc------CCcCCCCCCcCC
Confidence 45678999999999766666677789999999999988752 378999999763
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.77 E-value=3.8e-05 Score=72.97 Aligned_cols=68 Identities=10% Similarity=0.199 Sum_probs=60.8
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCC-----CceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 111 LVYIIGLPINLADEDLLQRKEYFGQY-----GKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQY-----GKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
+|=+-|||..+.++.|. .+...| |.|+||++..+. ++|.|.|.+...|.+|..+|||.+++
T Consensus 23 tiaL~~ipDtvndarIr---~lve~~~~i~~g~i~KI~L~pDH-----------~GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 23 LICLFPLSDKVSPSLIC---QFLQEEIHINEKDIRKILLVSDF-----------NGAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp CEEEECCCTTCCHHHHH---HHHHHHTCCCTTTCSEEEEETTT-----------TEEEEECSCHHHHHHHHHHHSSEEET
T ss_pred EEEEecCCCCCCHHHHH---HHHhhhhccCccceeEEEEecCC-----------CceEEEEccchhhHHHHhhcCCeeec
Confidence 46789999999998874 788888 999999997554 36999999999999999999999999
Q ss_pred CeEEEEE
Q 001928 186 GRPLRAC 192 (995)
Q Consensus 186 GRvLRAS 192 (995)
||.|||.
T Consensus 89 gr~Lr~g 95 (117)
T 2l9w_A 89 GKVIRSG 95 (117)
T ss_dssp TEEEEEE
T ss_pred CeEEEec
Confidence 9999974
No 213
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.73 E-value=1.6e-05 Score=69.30 Aligned_cols=49 Identities=31% Similarity=0.732 Sum_probs=37.3
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccc
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAY 60 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpY 60 (995)
++..||||.+.|. |....|| ||+-+|.-|+...+.. .....||-||+++
T Consensus 12 ~~~~C~IC~~~~~--~p~~~~~-CgH~fC~~Ci~~~~~~----~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMT--DAVVIPC-CGNSYCDECIRTALLE----SDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECS--SCEECTT-TCCEECHHHHHHHHHH----CTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhc--CceECCC-CCCHHHHHHHHHHHHh----cCCCcCcCCCCcC
Confidence 4578999999984 4444332 9999999999887641 2346999999997
No 214
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.68 E-value=2.4e-05 Score=66.31 Aligned_cols=56 Identities=21% Similarity=0.546 Sum_probs=43.3
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~ 66 (995)
+++..||+|++.|+..+ .....+||+.+|..|..+.++ ....||-||+++....+.
T Consensus 13 ~~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGE-SVRQLPCNHLFHDSCIVPWLE------QHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTS-CEEECTTSCEEETTTTHHHHT------TTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCC-CEEEeCCCCeecHHHHHHHHH------cCCcCcCcCCccCCcccC
Confidence 34679999999997544 333446999999999988863 347899999999877654
No 215
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.66 E-value=1.4e-05 Score=66.08 Aligned_cols=58 Identities=19% Similarity=0.627 Sum_probs=45.2
Q ss_pred cccCCCCCCcccCCCcc---CCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 001928 3 DKAEKTCPLCAEEMDLT---DQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (995)
Q Consensus 3 De~d~~CPLC~EelD~T---D~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~ 66 (995)
.+++..||+|.+.++.. +....-.+||+.+|.-|+.+.++ ....||-||+++..+.+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKINHKRYH 67 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH------HCSBCTTTCCBCCCCSCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH------cCCCCCCCCCccChhhee
Confidence 45678999999998643 33345668999999999998864 246999999999877653
No 216
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=2.6e-05 Score=64.96 Aligned_cols=55 Identities=29% Similarity=0.688 Sum_probs=41.1
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
+++..||+|.+.+. |... .+||+.+|..|+...++ .......||-||+++..+.+
T Consensus 18 ~~~~~C~IC~~~~~--~~~~--~~CgH~fC~~Ci~~~~~---~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQ--KPVT--IDCGHNFCLKCITQIGE---TSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCS--SEEE--CTTCCEEEHHHHHHHCS---SSCSCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccC--CeEE--cCCCChhhHHHHHHHHH---cCCCCCCCCCCCCcCCcccC
Confidence 34579999999985 3333 38999999999998853 12346689999999876543
No 217
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=5.4e-05 Score=64.01 Aligned_cols=57 Identities=33% Similarity=0.721 Sum_probs=43.2
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
++..||+|.+.+. |... .+||+.+|.-|+...+...........||-||+++..+.+
T Consensus 18 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 18 EEVTCPICLELLT--QPLS--LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCTTTCSCCS--SCBC--CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred CCCCCCCCCcccC--Ccee--CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 4679999999984 3222 4799999999999887643233457899999999876544
No 218
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.62 E-value=2.7e-05 Score=64.14 Aligned_cols=57 Identities=25% Similarity=0.599 Sum_probs=43.3
Q ss_pred cCCCCCCccc-CCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 001928 5 AEKTCPLCAE-EMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (995)
Q Consensus 5 ~d~~CPLC~E-elD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~ 66 (995)
++..||+|.+ .+......+..-+||+.+|..|+.+... .....||-||+++..+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV-----RGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH-----TTSSSCTTTCCCCSSCCCE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH-----cCCCcCCCCCCccccccce
Confidence 4678999999 6644333334458999999999998853 2357899999999877664
No 219
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.60 E-value=1.8e-05 Score=63.98 Aligned_cols=56 Identities=21% Similarity=0.637 Sum_probs=44.3
Q ss_pred cCCCCCCcccCCCcc---CCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 001928 5 AEKTCPLCAEEMDLT---DQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (995)
Q Consensus 5 ~d~~CPLC~EelD~T---D~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~ 66 (995)
++..||+|.+.++.. +......+||+.+|.-|+.+.++. ...||-||+++..+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH------CSBCTTTCCBCTTTCEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc------CCCCCCCCccCCcccee
Confidence 457899999998642 344566799999999999988752 57999999999877653
No 220
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.58 E-value=4.6e-05 Score=64.41 Aligned_cols=57 Identities=28% Similarity=0.698 Sum_probs=42.0
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
++..||+|.+.+. |.. ..+||+.+|..|+........+......||.||+++..+.+
T Consensus 18 ~~~~C~IC~~~~~--~p~--~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 18 EEVTCPICLELLK--EPV--SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp TTTSCTTTCSCCS--SCE--ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred cCCCCcCCChhhC--cce--eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 4679999999984 333 35699999999999887532112346799999999876544
No 221
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=2.6e-05 Score=63.84 Aligned_cols=53 Identities=21% Similarity=0.666 Sum_probs=41.4
Q ss_pred ccCCCCCCcccCCCcc---CCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001928 4 KAEKTCPLCAEEMDLT---DQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 4 e~d~~CPLC~EelD~T---D~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
+++..||+|++.+... +......+||+.+|.-|+...+.. ...||-||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~------~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN------ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc------CCCCCCCCCccCc
Confidence 4568999999998643 334456689999999999988742 5789999998753
No 222
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.52 E-value=5.8e-05 Score=59.80 Aligned_cols=51 Identities=20% Similarity=0.485 Sum_probs=39.0
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccc
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAY 60 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpY 60 (995)
+++..|++|+++++..+.....-.||+.+|.-|....+. ....||-||+++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~------~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG------SHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT------TCCSCSSSCCCS
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH------cCCcCcCCCCEe
Confidence 456899999999976654443325999999999877652 367899999975
No 223
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.51 E-value=2.8e-05 Score=65.74 Aligned_cols=53 Identities=19% Similarity=0.513 Sum_probs=41.1
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
+++..||+|+++++..+ .....+||+.+|.-|..+.+.. +..||-||+++...
T Consensus 21 ~~~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~~------~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWLKA------NRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTC-EEEEETTTEEEETTHHHHHHHH------CSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCC-eEEEECCCCHhHHHHHHHHHHc------CCcCcCcCCcCCCC
Confidence 45678999999997544 4445569999999999887642 46899999988653
No 224
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.49 E-value=6.5e-05 Score=62.24 Aligned_cols=53 Identities=17% Similarity=0.524 Sum_probs=40.0
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
+++..||+|++.|+..+ ...-.+||+.+|..|....+.. ...||-||+++...
T Consensus 12 ~~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~------~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGE-DVRRLPCMHLFHQVCVDQWLIT------NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSS-CEEECTTSCEEEHHHHHHHHHH------CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCC-cEEEeCCCCHHHHHHHHHHHHc------CCCCcCcCccccCc
Confidence 44578999999996433 3444579999999999887642 46799999987653
No 225
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=7.9e-05 Score=62.50 Aligned_cols=52 Identities=23% Similarity=0.560 Sum_probs=39.8
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
+++..|++|+++|...+ ...-.+||+.+|.-|+...+.. ...||-||+++.+
T Consensus 13 ~~~~~C~IC~~~~~~~~-~~~~~~C~H~f~~~Ci~~~~~~------~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRD-ELGICPCKHAFHRKCLIKWLEV------RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSS-CEEEETTTEEEEHHHHHHHHHH------CSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCC-cEEEcCCCCEecHHHHHHHHHc------CCcCCCcCccccc
Confidence 44679999999996443 3444579999999999887642 4589999998765
No 226
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.40 E-value=6.5e-05 Score=72.38 Aligned_cols=50 Identities=22% Similarity=0.603 Sum_probs=38.4
Q ss_pred CCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001928 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
+..||+|.+.|.. .....+||+.+|..|+.+.+. .....||-||+++...
T Consensus 54 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 54 ELMCPICLDMLKN---TMTTKECLHRFCADCIITALR-----SGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHH-----TTCCBCTTTCCBCCSG
T ss_pred CCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHH-----hCcCCCCCCCCcCCCc
Confidence 3589999999853 222249999999999998874 2367899999998543
No 227
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=4.7e-05 Score=63.85 Aligned_cols=52 Identities=17% Similarity=0.398 Sum_probs=39.7
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
+++..||+|.+.+. |... .+||+.+|..|+.+.+. ....||-||+++..+.+
T Consensus 13 ~~~~~C~IC~~~~~--~~~~--~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 13 LTVPECAICLQTCV--HPVS--LPCKHVFCYLCVKGASW------LGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSCCBCSSSSSBCS--SEEE--ETTTEEEEHHHHHHCTT------CSSBCSSSCCBCCHHHH
T ss_pred CCCCCCccCCcccC--CCEE--ccCCCHHHHHHHHHHHH------CCCcCcCcCchhCHhhc
Confidence 45678999999983 3333 36999999999988652 34799999999877654
No 228
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=4.3e-05 Score=63.46 Aligned_cols=54 Identities=19% Similarity=0.433 Sum_probs=41.9
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchhcc
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGM 68 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~~~ 68 (995)
+++..||+|++.+.. ..-+||+.+|..|..+.+. ....||-||+++......+.
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD------RHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC------CCSSCHHHHHCTTCCCCCCC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH------CcCcCCCcCCcccCCCcccc
Confidence 346799999999854 4456899999999988752 47899999999887655444
No 229
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.36 E-value=0.00013 Score=64.56 Aligned_cols=52 Identities=17% Similarity=0.562 Sum_probs=39.6
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
++..||+|.+.|.. .... -+||+.+|.-|+.+.+. ....||-||+++....+
T Consensus 21 ~~~~C~IC~~~~~~--p~~~-~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~~~~l 72 (99)
T 2y43_A 21 DLLRCGICFEYFNI--AMII-PQCSHNYCSLCIRKFLS------YKTQCPTCCVTVTEPDL 72 (99)
T ss_dssp HHTBCTTTCSBCSS--EEEC-TTTCCEEEHHHHHHHHT------TCCBCTTTCCBCCGGGC
T ss_pred CCCCcccCChhhCC--cCEE-CCCCCHhhHHHHHHHHH------CCCCCCCCCCcCChhhC
Confidence 45789999999853 2111 37999999999998863 35799999999887543
No 230
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.35 E-value=9.4e-05 Score=66.82 Aligned_cols=59 Identities=19% Similarity=0.509 Sum_probs=41.6
Q ss_pred ccCCCCCCcccCCCccC--------------CCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001928 4 KAEKTCPLCAEEMDLTD--------------QQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD--------------~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
..+..||||+++|...+ ....--+||+.+|.-|....+.... ......||-||+.|.+.
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~-~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN-KDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC-CSSCCBCTTTCCBSSSC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc-CCCCCcCCCCCCccCCC
Confidence 34578999999995432 1112457999999999988764211 12467899999999765
No 231
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.33 E-value=8.6e-05 Score=67.45 Aligned_cols=50 Identities=24% Similarity=0.554 Sum_probs=38.1
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
+++..||+|.+.|. |.... +||+.+|..|+.+..+ .....||-||+++..
T Consensus 13 ~~~~~C~iC~~~~~--~p~~~--~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV--EPVTL--PCNHTLCKPCFQSTVE-----KASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS--SCEEC--TTSCEECHHHHCCCCC-----TTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC--ceeEc--CCCCHHhHHHHHHHHh-----HCcCCCCCCCcccCc
Confidence 34578999999984 33333 7999999999988753 235789999999864
No 232
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.31 E-value=8.6e-05 Score=62.20 Aligned_cols=53 Identities=19% Similarity=0.444 Sum_probs=42.0
Q ss_pred CcccCCCCCCcccCCCccCCCccccCCCCc-hhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001928 2 SDKAEKTCPLCAEEMDLTDQQLKPCNCGYE-ICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 2 sDe~d~~CPLC~EelD~TD~~F~PC~CGYQ-IC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
+.+++..|++|++.. .|..|..-+||+. +|..|..++.+ .+..||-||+++..
T Consensus 4 ~~~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~------~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 4 PLNAIEPCVICQGRP--KNGCIVHGKTGHLMACFTCAKKLKK------RNKPCPVCRQPIQM 57 (64)
T ss_dssp -CGGGSCCTTTSSSC--SCEEEEETTEEEEEECHHHHHHHHH------TTCCCTTTCCCCCE
T ss_pred CCCCcCCCCcCCCCC--CCEEEECCCCCChhhHHHHHHHHHH------cCCcCCCcCcchhc
Confidence 456788999999986 4556665568999 79999999864 36789999998864
No 233
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.23 E-value=0.00011 Score=64.91 Aligned_cols=52 Identities=25% Similarity=0.540 Sum_probs=40.0
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
+++..||+|+++|...+ ...-.+||+.+|.-|....+. ....||-||+++..
T Consensus 38 ~~~~~C~IC~~~~~~~~-~~~~l~C~H~Fh~~Ci~~wl~------~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGD-VATELPCHHYFHKPCVSIWLQ------KSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTC-EEEEETTTEEEEHHHHHHHHT------TTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCC-cEEecCCCChHHHHHHHHHHH------cCCcCcCcCccCCC
Confidence 35678999999997544 344467999999999888753 35799999997754
No 234
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=0.0002 Score=59.12 Aligned_cols=52 Identities=21% Similarity=0.594 Sum_probs=40.2
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
++..||+|.+.+. |... .+||+.+|.-|+.+.++ .....||-||+++..+.+
T Consensus 14 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 14 DKYKCEKCHLVLC--SPKQ--TECGHRFCESCMAALLS-----SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCEECTTTCCEES--SCCC--CSSSCCCCHHHHHHHHT-----TSSCCCTTTCCCCCTTTC
T ss_pred cCCCCCCCChHhc--CeeE--CCCCCHHHHHHHHHHHH-----hCcCCCCCCCcCCChhhc
Confidence 4568999999984 3322 48999999999998863 346789999999877653
No 235
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.10 E-value=0.00016 Score=68.19 Aligned_cols=50 Identities=28% Similarity=0.688 Sum_probs=38.4
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccc
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEK 64 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~ 64 (995)
++..||+|++.|. |.. -.+||+.+|..|....++ ....||-||+++....
T Consensus 52 ~~~~C~iC~~~~~--~~~--~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 52 NELQCIICSEYFI--EAV--TLNCAHSFCSYCINEWMK------RKIECPICRKDIKSKT 101 (138)
T ss_dssp HHSBCTTTCSBCS--SEE--EETTSCEEEHHHHHHHTT------TCSBCTTTCCBCCCEE
T ss_pred ccCCCcccCcccC--Cce--ECCCCCCccHHHHHHHHH------cCCcCCCCCCcCCCCC
Confidence 4568999999984 333 357999999999887753 3578999999986543
No 236
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.09 E-value=0.0003 Score=59.08 Aligned_cols=54 Identities=17% Similarity=0.381 Sum_probs=40.7
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~ 66 (995)
+++..||+|.+.|.. ....-+||+.+|..|..+.++. ...||-||+++....+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~------~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY------SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH------CSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc------CCcCCCcCcccCccccc
Confidence 345789999999853 2222379999999999888642 57999999999876553
No 237
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.06 E-value=0.00032 Score=57.81 Aligned_cols=50 Identities=20% Similarity=0.610 Sum_probs=38.0
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
+++..||+|.+.+. |. ...-+||+.+|..|..+.+. ....||-||+++..
T Consensus 3 ~~~~~C~IC~~~~~--~~-~~~~~C~H~fc~~Ci~~~~~------~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPS--NY-SMALPCLHAFCYVCITRWIR------QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCC--SC-EEETTTTEEESTTHHHHHHH------HSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCcccc--CC-cEecCCCCeeHHHHHHHHHh------CcCcCcCCChhhHh
Confidence 34679999999985 22 13346899999999988764 24689999998864
No 238
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.04 E-value=0.00041 Score=63.91 Aligned_cols=49 Identities=22% Similarity=0.470 Sum_probs=38.2
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
++..||+|.+.|. |... .+||+.+|..|+.+.+. .....||-||+++..
T Consensus 51 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF--RPIT--TVCQHNVCKDCLDRSFR-----AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS--SEEE--CTTSCEEEHHHHHHHHH-----TTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc--CcEE--eeCCCcccHHHHHHHHh-----HCcCCCCCCCccCCC
Confidence 4578999999985 2222 37999999999988764 234589999999976
No 239
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.04 E-value=0.00094 Score=59.69 Aligned_cols=55 Identities=20% Similarity=0.612 Sum_probs=41.2
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~ 66 (995)
++..||+|.+.+. |... .+||+.+|.-|..+.+.. ......||-||+++....+.
T Consensus 20 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~---~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 20 KILECPICLELIK--EPVS--TKCDHIFCKFCMLKLLNQ---KKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HHTSCSSSCCCCS--SCCB--CTTSCCCCSHHHHHHHHS---SSSSCCCTTTSCCCCTTTCB
T ss_pred CCCCCcccChhhc--CeEE--CCCCCHHHHHHHHHHHHh---CCCCCCCcCCCCcCCHhhcC
Confidence 3578999999884 3333 479999999999988752 12335899999999877654
No 240
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.04 E-value=0.00047 Score=64.55 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=63.4
Q ss_pred CCEEEEeCCCCCC-ChHHHHHh-HhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 001928 109 RNLVYIIGLPINL-ADEDLLQR-KEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILDG 186 (995)
Q Consensus 109 KNLVYVvGLP~~I-AeEDLLRk-~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~LdG 186 (995)
-|.++|.+|+..+ ..+++-.+ .++|.+|+++......+.-. .+-|.|.+.|+|.+|-..|||..+.|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-----------Rirv~F~~~~~A~~AR~~Lh~~~f~g 73 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-----------RVRINFSNPLSAADARLRLHKTEFLG 73 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-----------EEEEECSSTTHHHHHHHTSTTSEETT
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-----------EEEEEeCChHHHHHHHHHhccceecC
Confidence 3789999998876 44443112 69999999999988876532 47899999999999999999999999
Q ss_pred eEEEEEecc
Q 001928 187 RPLRACFGT 195 (995)
Q Consensus 187 RvLRASfGT 195 (995)
+.|||-||.
T Consensus 74 ~~~r~YFgq 82 (104)
T 1wey_A 74 KEMKLYFAQ 82 (104)
T ss_dssp EECEEECCC
T ss_pred ceeEEEecC
Confidence 999999998
No 241
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.03 E-value=0.00042 Score=62.14 Aligned_cols=54 Identities=22% Similarity=0.557 Sum_probs=41.0
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~ 66 (995)
++..||+|.+.|. |.. .--+||+.+|..|....+.. ....||-||+++..+.+.
T Consensus 21 ~~~~C~IC~~~~~--~p~-~~~~CgH~FC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 21 EVFRCFICMEKLR--DAR-LCPHCSKLCCFSCIRRWLTE-----QRAQCPHCRAPLQLRELV 74 (100)
T ss_dssp HHTBCTTTCSBCS--SEE-ECTTTCCEEEHHHHHHHHHH-----TCSBCTTTCCBCCGGGCE
T ss_pred CCCCCccCCcccc--Ccc-ccCCCCChhhHHHHHHHHHH-----CcCCCCCCCCcCCHHHhH
Confidence 4679999999995 222 21479999999999888752 126899999999877654
No 242
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.03 E-value=0.00034 Score=60.72 Aligned_cols=57 Identities=21% Similarity=0.463 Sum_probs=42.3
Q ss_pred cccCCCCCCcccCCCc-----------cCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001928 3 DKAEKTCPLCAEEMDL-----------TDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 3 De~d~~CPLC~EelD~-----------TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
|.++..|++|+++|+. .|......+||+.+|.-|..+-+. ....||-||+++....+
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK------QNNRCPLCQQDWVVQRI 79 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT------TCCBCTTTCCBCCEEEE
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH------hCCCCCCcCCCcchhhc
Confidence 4467789999999964 233444457999999999887753 35699999999876654
No 243
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.95 E-value=0.00021 Score=60.22 Aligned_cols=58 Identities=29% Similarity=0.668 Sum_probs=40.7
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhh-ccCCCCCCccccccccccch
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAE-KDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~ae-k~~~~grCPACRrpYdee~I 65 (995)
+++..||+|.+.+. |... .+||+.+|.-|+.+.++... .......||-||+++....+
T Consensus 10 ~~~~~C~IC~~~~~--~p~~--l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 10 QEEVTCPICLELLT--EPLS--LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp CCCCEETTTTEECS--SCCC--CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred ccCCCCcCCCcccC--CeeE--CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence 34678999999984 3222 47999999999987753100 00236799999999876544
No 244
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.94 E-value=0.00056 Score=57.88 Aligned_cols=53 Identities=15% Similarity=0.269 Sum_probs=40.6
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
.++..||+|.+.|. |-.. .+||+-+|.-|..+.++ .....||-||+++....+
T Consensus 6 ~~~~~C~IC~~~~~--~Pv~--~~CgH~fc~~Ci~~~~~-----~~~~~CP~C~~~~~~~~l 58 (78)
T 1t1h_A 6 PEYFRCPISLELMK--DPVI--VSTGQTYERSSIQKWLD-----AGHKTCPKSQETLLHAGL 58 (78)
T ss_dssp SSSSSCTTTSCCCS--SEEE--ETTTEEEEHHHHHHHHT-----TTCCBCTTTCCBCSSCCC
T ss_pred cccCCCCCcccccc--CCEE--cCCCCeecHHHHHHHHH-----HCcCCCCCCcCCCChhhC
Confidence 34679999999984 3222 47999999999988863 236789999999986654
No 245
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.89 E-value=0.00054 Score=58.60 Aligned_cols=46 Identities=17% Similarity=0.432 Sum_probs=36.8
Q ss_pred CCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccc
Q 001928 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYd 61 (995)
+..||+|.+.|. |.. -.+||+.+|..|+...++ ....||-||+++.
T Consensus 15 ~~~C~IC~~~~~--~p~--~~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQ--NPV--VTKCRHYFCESCALEHFR------ATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCC--SEE--ECTTSCEEEHHHHHHHHH------HCSBCSSSCCBCC
T ss_pred CCCCcCCCchhc--Cee--EccCCCHhHHHHHHHHHH------CCCcCCCcCcccc
Confidence 468999999983 333 258999999999988864 2578999999986
No 246
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.89 E-value=0.0012 Score=58.21 Aligned_cols=51 Identities=20% Similarity=0.085 Sum_probs=40.1
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
++-.||||.+.| +|-...| ||+-+|+-|..+.++ ..+.||-||.++..+.+
T Consensus 13 ~~~~CpI~~~~m--~dPV~~~--cGhtf~r~~I~~~l~------~~~~cP~~~~~l~~~~l 63 (85)
T 2kr4_A 13 DEFRDPLMDTLM--TDPVRLP--SGTVMDRSIILRHLL------NSPTDPFNRQMLTESML 63 (85)
T ss_dssp TTTBCTTTCSBC--SSEEECT--TSCEEEHHHHHHHHH------HCSBCTTTCCBCCGGGC
T ss_pred hheECcccCchh--cCCeECC--CCCEECHHHHHHHHh------cCCCCCCCcCCCChHhc
Confidence 357899999999 4555554 899999999887764 25899999999987654
No 247
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.83 E-value=0.00081 Score=59.40 Aligned_cols=60 Identities=27% Similarity=0.649 Sum_probs=42.7
Q ss_pred cCCCCCCcccCCCccCCCcccc-CCCCchhhhhHHHHHHhhhccC--CCCCCcc--cccc--ccccchh
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPC-NCGYEICVWCWNHIMEMAEKDG--TEGRCPA--CRTA--YDKEKIV 66 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC-~CGYQIC~fC~h~I~~~aek~~--~~grCPA--CRrp--Ydee~I~ 66 (995)
++.+||+|++++.. ..+... +||+..|.-||...++..-++. ..-+||. ||.. ...+.+.
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 4 GSSGCKLCLGEYPV--EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE 70 (94)
T ss_dssp SBCCCSSSCCCCBG--GGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH
T ss_pred CCcCCcccCccccc--ccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH
Confidence 46789999999854 333332 6999999999988776432222 2458999 9998 7766654
No 248
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.82 E-value=0.0023 Score=61.18 Aligned_cols=70 Identities=21% Similarity=0.346 Sum_probs=55.7
Q ss_pred cccCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCCC
Q 001928 106 VIQRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYILD 185 (995)
Q Consensus 106 VIQKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~Ld 185 (995)
.....-|-|-|.|+.. ...+| ++|.+||.|+++... . .....+|+|+++.+|++|+.. ||..++
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL---~~F~~~G~Iv~~~~~--~---------~~NWihI~Y~s~~~A~rAL~k-NG~ii~ 84 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYIL---LQFAQYGNILKHVMS--N---------TGNWMHIRYQSKLQARKALSK-DGRIFG 84 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHH---HHHHTTSCEEEEEEC--S---------SSSEEEEEESSHHHHHHHHTT-TTCEET
T ss_pred CCCCCEEEEECCCHHH-HHHHH---HHHHhhCcEEEeccC--C---------CCCeEEEEeCCHHHHHHHHHh-CCeEec
Confidence 4447789999999996 45677 799999999999872 1 234799999999999999986 999888
Q ss_pred Ce-EEEE
Q 001928 186 GR-PLRA 191 (995)
Q Consensus 186 GR-vLRA 191 (995)
|. .|-|
T Consensus 85 g~~mIGV 91 (119)
T 1wwh_A 85 ESIMIGV 91 (119)
T ss_dssp TTEECEE
T ss_pred CCEEEEE
Confidence 63 3443
No 249
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.81 E-value=0.00046 Score=57.63 Aligned_cols=51 Identities=22% Similarity=0.539 Sum_probs=40.0
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCc-hhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYE-ICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQ-IC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
+.+..|++|++.. .|..+.--+||+. +|..|..++.+ .++.||-||+++..
T Consensus 5 ~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~------~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRP--RDGNIIHGRTGHLVTCFHCARRLKK------AGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSB--SCEEEEETTEEEEEECHHHHHHHHH------TTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcC--CCeEEEecCCCCHhHHHHHHHHHHH------hCCcCCCcCchhhc
Confidence 4568999999976 4445554578998 89999999864 35899999998864
No 250
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.78 E-value=0.00073 Score=59.61 Aligned_cols=58 Identities=19% Similarity=0.477 Sum_probs=45.0
Q ss_pred cccCCCCCCcccCCCccCCCccccCCC---CchhhhhHHHHHHhhhccCCCCCCccccccccccc
Q 001928 3 DKAEKTCPLCAEEMDLTDQQLKPCNCG---YEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEK 64 (995)
Q Consensus 3 De~d~~CPLC~EelD~TD~~F~PC~CG---YQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~ 64 (995)
++++..|+||.++++..+....||.|. +.+..-|..+=+.. ..+..||-||.+|.-+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~----~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS----SDTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH----HCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh----CCCCCCCCCCCeeecCc
Confidence 345689999999998878888999993 77888888777642 12468999999996543
No 251
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=96.77 E-value=0.00081 Score=56.97 Aligned_cols=50 Identities=26% Similarity=0.573 Sum_probs=37.5
Q ss_pred cCCCCCCcccCCCccCCCccccC-CCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCN-CGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~-CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
++..||+|.+.|. |... .+ ||+.+|..|....+.. .....||-||+++..
T Consensus 14 ~~~~C~IC~~~~~--~p~~--~~~CgH~fC~~Ci~~~~~~----~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMT--DAVV--IPCCGNSYCDECIRTALLE----SDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCT--TCEE--CSSSCCEECTTHHHHHHHH----SSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHh--CCeE--cCCCCCHHHHHHHHHHHHh----cCCCcCCCCCCcCCC
Confidence 4579999999985 3322 56 9999999999888742 224689999997543
No 252
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.76 E-value=0.00041 Score=62.84 Aligned_cols=57 Identities=19% Similarity=0.642 Sum_probs=44.4
Q ss_pred ccCCCCCCcccCCCcc---CCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 001928 4 KAEKTCPLCAEEMDLT---DQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (995)
Q Consensus 4 e~d~~CPLC~EelD~T---D~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~ 66 (995)
.++..||+|.+.|+.. +....-.+||+.+|..|+.+.++ ....||.||+++....+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKINHKRYH 64 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT------TCSBCTTTCCBCTTTCEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH------hCCCCCCCCCcCcccccc
Confidence 3468999999998543 23336679999999999988863 346999999999877664
No 253
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.74 E-value=0.0005 Score=58.64 Aligned_cols=44 Identities=27% Similarity=0.662 Sum_probs=34.8
Q ss_pred CCCCCCcccCCCccCCCccccCCCCc-hhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001928 6 EKTCPLCAEEMDLTDQQLKPCNCGYE-ICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC~CGYQ-IC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
+..||+|++.+ .|..+. +||+. +|..|..++ ..||-||+++...
T Consensus 25 ~~~C~IC~~~~--~~~~~~--pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRN--IAIVFV--PCGHLVTCKQCAEAV----------DKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSC--CCBCCS--SSCCCCBCHHHHHHC----------SBCTTTCCBCCCC
T ss_pred CCCCCcCCCCC--CCEEEe--cCCCHHHHHHHhhCC----------CCCccCCceecCc
Confidence 46899999987 455555 57999 899998653 5899999988764
No 254
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.72 E-value=0.0012 Score=60.10 Aligned_cols=50 Identities=20% Similarity=0.091 Sum_probs=39.7
Q ss_pred CCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001928 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
+-.||||.+.| +|-...| ||+-+|+-|..+.++ ..+.||-||.++..+.+
T Consensus 29 ~~~CpI~~~~m--~dPV~~~--cGhtf~r~~I~~~l~------~~~~cP~~~~~l~~~~L 78 (100)
T 2kre_A 29 EFRDPLMDTLM--TDPVRLP--SGTIMDRSIILRHLL------NSPTDPFNRQTLTESML 78 (100)
T ss_dssp TTBCTTTCSBC--SSEEEET--TTEEEEHHHHHHHTT------SCSBCSSSCCBCCTTSS
T ss_pred hhCCcCccCcc--cCCeECC--CCCEEchHHHHHHHH------cCCCCCCCCCCCChhhc
Confidence 46899999999 4555555 899999998877753 36899999999987654
No 255
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.68 E-value=0.001 Score=64.30 Aligned_cols=50 Identities=22% Similarity=0.482 Sum_probs=39.0
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
++..||+|.+.|. |... .+||+-+|..|....++ .....||-||.++...
T Consensus 77 ~~~~C~IC~~~~~--~pv~--~~CgH~fC~~Ci~~~~~-----~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY--QPVT--TECFHNVCKDCLQRSFK-----AQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS--SEEE--CTTSCEEEHHHHHHHHH-----TTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhc--CCEE--cCCCCchhHHHHHHHHH-----hCCCcCCCCCccCCCC
Confidence 4578999999884 2222 58999999999988864 2345899999999876
No 256
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.68 E-value=0.0011 Score=56.43 Aligned_cols=48 Identities=27% Similarity=0.674 Sum_probs=37.2
Q ss_pred CcccCCCCCCcccCCCccCCCccccCCCCc-hhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001928 2 SDKAEKTCPLCAEEMDLTDQQLKPCNCGYE-ICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 2 sDe~d~~CPLC~EelD~TD~~F~PC~CGYQ-IC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
.++++..|++|++.. .|..|.| ||+. +|..|..++ ..||-||+++...
T Consensus 11 ~~~~~~~C~IC~~~~--~~~v~~p--CgH~~~C~~C~~~~----------~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 11 SEENSKDCVVCQNGT--VNWVLLP--CRHTCLCDGCVKYF----------QQCPMCRQFVQES 59 (68)
T ss_dssp SCCCSSCCSSSSSSC--CCCEETT--TTBCCSCTTHHHHC----------SSCTTTCCCCCCE
T ss_pred cCCCCCCCCCcCcCC--CCEEEEC--CCChhhhHHHHhcC----------CCCCCCCcchhce
Confidence 455678999999976 4556655 6888 999998853 5899999988764
No 257
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.63 E-value=0.0011 Score=59.79 Aligned_cols=51 Identities=25% Similarity=0.504 Sum_probs=39.3
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
+++..||+|.+.|. | .....+||+.+|..|+...++ ....||-||+++...
T Consensus 13 ~~~~~C~IC~~~~~--~-p~~~~~CgH~fC~~Ci~~~~~------~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFI--D-ATTIIECLHSFCKTCIVRYLE------TSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCS--S-EEEETTTCCEEEHHHHHHHHT------SCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHh--C-cCEeCCCCChhhHHHHHHHHH------hCCcCcCCCcccccc
Confidence 45689999999984 2 222238999999999988863 348999999998764
No 258
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.59 E-value=0.0013 Score=59.75 Aligned_cols=53 Identities=19% Similarity=0.499 Sum_probs=40.9
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~ 66 (995)
++..||+|.+.|. |... .+||+.+|..|+.+.++. ....||-||+++....+.
T Consensus 22 ~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 22 KSISCQICEHILA--DPVE--TSCKHLFCRICILRCLKV-----MGSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HHTBCTTTCSBCS--SEEE--CTTSCEEEHHHHHHHHHH-----TCSBCTTTCCBCCGGGCB
T ss_pred CCCCCCCCCcHhc--CcEE--cCCCCcccHHHHHHHHhH-----CcCcCCCCCCCCCHhhcc
Confidence 3578999999984 3222 589999999999988752 256899999998876553
No 259
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.53 E-value=0.00073 Score=61.23 Aligned_cols=58 Identities=19% Similarity=0.632 Sum_probs=44.4
Q ss_pred cccCCCCCCcccCCCcc---CCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 001928 3 DKAEKTCPLCAEEMDLT---DQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (995)
Q Consensus 3 De~d~~CPLC~EelD~T---D~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~ 66 (995)
++++..||+|.+.++.. ......++||+..|..|..+.++ ....||-||+++.++.+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------~~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------NANTCPTCRKKINHKRYH 129 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH------HCSBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH------cCCCCCCCCCcCChhcce
Confidence 35668899999988643 23335679999999999988764 246999999999887653
No 260
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.49 E-value=0.0019 Score=59.75 Aligned_cols=54 Identities=15% Similarity=0.345 Sum_probs=40.7
Q ss_pred cccCCCCCCcccCCCcc--------------CCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001928 3 DKAEKTCPLCAEEMDLT--------------DQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 3 De~d~~CPLC~EelD~T--------------D~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
|-++..|+||.+.|+.. |-.....+||+.+|.-|...-+. ....||-||++|.-
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~------~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK------TRQVCPLDNREWEF 101 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT------TCSBCSSSCSBCCE
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH------cCCcCcCCCCccee
Confidence 34568999999999764 22344568999998888877653 36789999998753
No 261
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.44 E-value=0.0031 Score=57.20 Aligned_cols=51 Identities=14% Similarity=0.101 Sum_probs=39.4
Q ss_pred cCCCCCCcccCCCccCCCccccCCC-CchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCG-YEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CG-YQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
++-.||||.+.| +|-... +|| +-+|+-|..+.++ .++.||-||.++..+.+
T Consensus 21 ~~~~CpI~~~~m--~dPV~~--~cG~htf~r~cI~~~l~------~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 21 DEFLDPIMSTLM--CDPVVL--PSSRVTVDRSTIARHLL------SDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp TTTBCTTTCSBC--SSEEEC--TTTCCEEEHHHHHHHTT------TSCBCTTTCSBCCTTTS
T ss_pred HhcCCcCccccc--cCCeEC--CCCCeEECHHHHHHHHH------hCCCCCCCCCCCChhhc
Confidence 356899999999 344443 588 9999999888763 26799999999987644
No 262
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.40 E-value=0.0013 Score=53.34 Aligned_cols=47 Identities=21% Similarity=0.523 Sum_probs=35.3
Q ss_pred cccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001928 3 DKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 3 De~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
++++..||+|.+.+. |.... +||+-+|..|... ....||-||+++.-
T Consensus 3 e~~~~~C~IC~~~~~--~p~~l--~CgH~fC~~Ci~~---------~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAK--CPKLL--PCLHTLCSGCLEA---------SGMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCB--CCSCS--TTSCCSBTTTCSS---------SSSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccC--CeEEc--CCCCcccHHHHcc---------CCCCCCcCCcEeec
Confidence 456679999999985 33333 5899988888655 25689999998753
No 263
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.39 E-value=0.002 Score=59.08 Aligned_cols=52 Identities=17% Similarity=0.478 Sum_probs=39.7
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
++..||+|.+.|.. . .-.+||+.+|..|+...+.. ....||-||+++....+
T Consensus 17 ~~~~C~IC~~~~~~--p--~~~~CgH~fC~~Ci~~~~~~-----~~~~CP~Cr~~~~~~~~ 68 (118)
T 3hct_A 17 SKYECPICLMALRE--A--VQTPCGHRFCKACIIKSIRD-----AGHKCPVDNEILLENQL 68 (118)
T ss_dssp GGGBCTTTCSBCSS--E--EECTTSCEEEHHHHHHHHHH-----HCSBCTTTCCBCCGGGC
T ss_pred CCCCCCcCChhhcC--e--EECCcCChhhHHHHHHHHhh-----CCCCCCCCCCCcCHHhc
Confidence 45789999999852 2 22479999999999888752 13489999999877654
No 264
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.38 E-value=0.0017 Score=59.46 Aligned_cols=49 Identities=18% Similarity=0.419 Sum_probs=37.6
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccc
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEK 64 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~ 64 (995)
++..||+|.+.|. | .....+||+.+|.-|..+.. ...||-||+++....
T Consensus 21 ~~~~C~IC~~~~~--~-pv~~~~CgH~fC~~Ci~~~~--------~~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 21 KLLRCSRCTNILR--E-PVCLGGCEHIFCSNCVSDCI--------GTGCPVCYTPAWIQD 69 (117)
T ss_dssp HTTSCSSSCSCCS--S-CBCCCSSSCCBCTTTGGGGT--------TTBCSSSCCBCSCSS
T ss_pred hCCCCCCCChHhh--C-ccEeCCCCCHHHHHHHHHHh--------cCCCcCCCCcCcccc
Confidence 4689999999984 2 23333799999999998874 278999999986543
No 265
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=96.30 E-value=0.001 Score=56.85 Aligned_cols=46 Identities=26% Similarity=0.644 Sum_probs=36.1
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCc-hhhhhHHHHHHhhhccCCCCCCccccccccccc
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYE-ICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEK 64 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQ-IC~fC~h~I~~~aek~~~~grCPACRrpYdee~ 64 (995)
++..|++|++.+ .|..+. +||+. +|..|..++ ..||-||+++....
T Consensus 23 ~~~~C~iC~~~~--~~~~~~--pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~~~ 69 (74)
T 4ic3_A 23 EEKLCKICMDRN--IAIVFV--PCGHLVTCKQCAEAV----------DKCPMCYTVITFKQ 69 (74)
T ss_dssp HHTBCTTTSSSB--CCEEEE--TTCCBCCCHHHHTTC----------SBCTTTCCBCSEEE
T ss_pred cCCCCCCCCCCC--CCEEEc--CCCChhHHHHhhhcC----------ccCCCcCcCccCcE
Confidence 457899999987 444555 68999 999997764 68999999887653
No 266
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.25 E-value=0.0032 Score=51.31 Aligned_cols=46 Identities=28% Similarity=0.726 Sum_probs=34.2
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccc
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPAC 56 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPAC 56 (995)
+++..||+|.+.+. |... .+||+.+|..|+.+.++. .....+||-|
T Consensus 18 ~~~~~C~IC~~~~~--~p~~--~~CgH~fC~~Ci~~~~~~---~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ--KPVT--IDCGHNFCLKCITQIGET---SCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS--SCEE--CTTSSEECHHHHHHHHHH---CSSCCCCSCC
T ss_pred ccCCCCCcCCchhC--CeEE--eCCCCcchHHHHHHHHHc---CCCCCcCcCC
Confidence 34679999999985 3322 389999999999998752 2245689987
No 267
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.04 E-value=0.0037 Score=60.37 Aligned_cols=53 Identities=19% Similarity=0.488 Sum_probs=41.0
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
+++..||+|.+.|.. . .-++||..+|..|+.+.++.. ...||.||+++....+
T Consensus 16 ~~~~~C~IC~~~~~~--p--v~~~CgH~fC~~Ci~~~~~~~-----~~~CP~Cr~~~~~~~~ 68 (170)
T 3hcs_A 16 ESKYECPICLMALRE--A--VQTPCGHRFCKACIIKSIRDA-----GHKCPVDNEILLENQL 68 (170)
T ss_dssp CGGGBCTTTCSBCSS--E--EECTTSCEEEHHHHHHHHHHH-----CSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCChhhcC--c--EECCCCCHHHHHHHHHHHHhC-----CCCCCCCccCcchhhh
Confidence 345799999999853 2 337999999999999987531 3499999999877643
No 268
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.90 E-value=0.0055 Score=51.44 Aligned_cols=52 Identities=27% Similarity=0.760 Sum_probs=38.0
Q ss_pred CCcccCCCCCCcccCCCccCCCccccCCCC------chhhhhHHHHHHhhhccCCCCCCcccccccc
Q 001928 1 MSDKAEKTCPLCAEEMDLTDQQLKPCNCGY------EICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (995)
Q Consensus 1 msDe~d~~CPLC~EelD~TD~~F~PC~CGY------QIC~fC~h~I~~~aek~~~~grCPACRrpYd 61 (995)
|.|+++..|.+|.++.+ +..+.||.|.- +-|+.=|=... .+..||-||.+|.
T Consensus 1 ~e~~~~~~CrIC~~~~~--~~l~~PC~C~gs~~~~H~~Cl~~W~~~~-------~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 1 MEDEDVPVCWICNEELG--NERFRACGCTGELENVHRSCLSTWLTIS-------RNTACQICGVVYN 58 (60)
T ss_dssp CTTCSCCEETTTTEECS--CCCCCSCCCSSGGGSCCHHHHHHHHHHH-------TCSBCTTTCCBCC
T ss_pred CCCCCCCEeEEeecCCC--CceecCcCCCCchhhhHHHHHHHHHHhC-------CCCccCCCCCeee
Confidence 78899999999999854 45689999932 33554444331 3578999999985
No 269
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=95.89 E-value=0.0021 Score=55.99 Aligned_cols=51 Identities=25% Similarity=0.623 Sum_probs=38.7
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCc-hhhhhHHHHHHhhhccCCCCCCccccccccccchhccc
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYE-ICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVGMA 69 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQ-IC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~~~~ 69 (995)
++..|++|++.+ .|..|. +||+. +|..|..++ ..||-||+++....-.|.+
T Consensus 17 ~~~~C~IC~~~~--~~~v~~--pCgH~~~C~~C~~~~----------~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 17 EAMLCMVCCEEE--INSTFC--PCGHTVCCESCAAQL----------QSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HHTBCTTTSSSB--CCEEEE--TTCBCCBCHHHHTTC----------SBCTTTCCBCCEEEECBCT
T ss_pred CCCEeEEeCccc--CcEEEE--CCCCHHHHHHHHHhc----------CcCCCCCchhhCeEEEEeC
Confidence 457899999976 455555 58998 899998876 2899999998876444443
No 270
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.88 E-value=0.0033 Score=63.48 Aligned_cols=52 Identities=12% Similarity=0.058 Sum_probs=38.9
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
++-.||||.+.| +|-... +||+-.|+-|..+.++. ....||-||.++....+
T Consensus 207 ~~~~c~i~~~~~--~dPv~~--~~gh~f~~~~i~~~~~~-----~~~~cP~~~~~~~~~~l 258 (281)
T 2c2l_A 207 DYLCGKISFELM--REPCIT--PSGITYDRKDIEEHLQR-----VGHFNPVTRSPLTQEQL 258 (281)
T ss_dssp STTBCTTTCSBC--SSEEEC--SSCCEEETTHHHHHHHH-----TCSSCTTTCCCCCGGGC
T ss_pred cccCCcCcCCHh--cCCeEC--CCCCEECHHHHHHHHHH-----CCCCCcCCCCCCchhcC
Confidence 457899999999 444444 48999999998887642 12339999999976654
No 271
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.67 E-value=0.0087 Score=47.45 Aligned_cols=45 Identities=27% Similarity=0.637 Sum_probs=33.5
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccc
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPAC 56 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPAC 56 (995)
++..||+|.+.+.. ... .+||+.+|..|+.+.+.. ......||-|
T Consensus 14 ~~~~C~IC~~~~~~--p~~--~~CgH~fC~~Ci~~~~~~---~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE--PVI--IECGHNFCKACITRWWED---LERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS--CCC--CSSCCCCCHHHHHHHTTS---SCCSCCCSCC
T ss_pred cCCCCccCCcccCc--cEe--CCCCCccCHHHHHHHHHh---cCCCCCCCCC
Confidence 46799999999853 323 479999999999887531 1356789987
No 272
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.63 E-value=0.0066 Score=67.61 Aligned_cols=52 Identities=29% Similarity=0.577 Sum_probs=39.4
Q ss_pred CCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchh
Q 001928 6 EKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIV 66 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~ 66 (995)
+..|++|++.+. |. .-.+||+..|.-|.....+. ....||-||++.....+.
T Consensus 332 ~~~C~ICle~~~--~p--v~lpCGH~FC~~Ci~~wl~~-----~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 332 FQLCKICAENDK--DV--KIEPCGHLMCTSCLTSWQES-----EGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSBCTTTSSSBC--CE--EEETTCCEECHHHHHHHHHH-----TCSBCTTTCCBCCEEEEC
T ss_pred CCCCCccCcCCC--Ce--EEeCCCChhhHHHHHHHHhc-----CCCCCCCCCCccCCceeE
Confidence 368999999983 32 33578999999999877541 367899999998876543
No 273
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.61 E-value=0.019 Score=51.20 Aligned_cols=59 Identities=24% Similarity=0.429 Sum_probs=39.5
Q ss_pred ccCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcc--cccc-ccccch
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPA--CRTA-YDKEKI 65 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPA--CRrp-Ydee~I 65 (995)
.++..||||.+.|. |-...| .||+-+|+-|....++...+......||- |++. +..+.+
T Consensus 5 ~~~~~CPI~~~~~~--dPV~~~-~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 5 SSGFTCPITKEEMK--KPVKNK-VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp SSCCBCTTTCSBCS--SEEEES-SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGE
T ss_pred CcEeECcCcCchhc--CCEEcC-CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhC
Confidence 45679999999994 322221 49999999998877653211123468999 9987 555443
No 274
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=95.59 E-value=0.015 Score=53.59 Aligned_cols=53 Identities=26% Similarity=0.793 Sum_probs=44.2
Q ss_pred cCCCCCCcccCCCccC--CCcccc-CCCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001928 5 AEKTCPLCAEEMDLTD--QQLKPC-NCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD--~~F~PC-~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
....|.+|-+.+-+|. ..|..| .|+|-+|+-||..=+ .+.+-.||.|..+|+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr-----keG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER-----REGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH-----HTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH-----hccCccccccCCcccc
Confidence 4579999999975444 479999 899999999998764 3688899999999974
No 275
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.56 E-value=0.0024 Score=60.40 Aligned_cols=53 Identities=15% Similarity=0.372 Sum_probs=2.0
Q ss_pred cccCCCCCCcccCCCcc--------------CCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccc
Q 001928 3 DKAEKTCPLCAEEMDLT--------------DQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYD 61 (995)
Q Consensus 3 De~d~~CPLC~EelD~T--------------D~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYd 61 (995)
|-+++.|+||.++|+.. |......+|++.+|.-|...-+. ....||-||+++.
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~------~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK------TRQVCPLDNREWE 111 (117)
T ss_dssp CCCC---------------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH------cCCcCCCCCCeee
Confidence 34567999999999742 22334458999988888766542 2578999999874
No 276
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=95.38 E-value=0.0035 Score=60.07 Aligned_cols=47 Identities=23% Similarity=0.590 Sum_probs=36.6
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccc
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAY 60 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpY 60 (995)
++..||+|.+.|.. - .-++||+.+|..|+.+.+. .....||.||++.
T Consensus 30 ~~~~C~IC~~~~~~--p--v~~~CgH~FC~~Ci~~~~~-----~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRR--P--FQAQCGHRYCSFCLASILS-----SGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSS--E--EECTTSCEEEHHHHHHHGG-----GSCEECHHHHHTT
T ss_pred cCcCCCCCChhhcC--c--EECCCCCccCHHHHHHHHh-----cCCCCCCCCCCcc
Confidence 45799999999842 2 3369999999999999863 1345899999975
No 277
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.026 Score=60.24 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=38.0
Q ss_pred CCCCCCcccCCCccCCCcccc-CCCCchhhhhHHHHHHhhhccCCCCCCcc--ccccccccch
Q 001928 6 EKTCPLCAEEMDLTDQQLKPC-NCGYEICVWCWNHIMEMAEKDGTEGRCPA--CRTAYDKEKI 65 (995)
Q Consensus 6 d~~CPLC~EelD~TD~~F~PC-~CGYQIC~fC~h~I~~~aek~~~~grCPA--CRrpYdee~I 65 (995)
+..||||.+.|. |-- -. .||+-+|+-|.....+ ......||- ||+++....+
T Consensus 181 el~CPIcl~~f~--DPV--ts~~CGHsFcR~cI~~~~~----~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 181 ELTCPITCKPYE--APL--ISRKCNHVFDRDGIQNYLQ----GYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp CSBCTTTSSBCS--SEE--EESSSCCEEEHHHHHHHST----TCSCEECSGGGCSCEECGGGE
T ss_pred eeECcCccCccc--CCe--eeCCCCCcccHHHHHHHHH----hCCCCCCCcccccCcCchhhC
Confidence 368999999993 221 12 7999999999887753 224468998 9998876554
No 278
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=94.36 E-value=0.017 Score=58.21 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=38.5
Q ss_pred cCCCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccch
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKI 65 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I 65 (995)
++-.||||.+.|. |-... +||+-+|+-|..+.++. . +..||-||.++....+
T Consensus 105 ~~f~CPI~~elm~--DPV~~--~~Ghtfer~~I~~~l~~----~-~~tcP~t~~~l~~~~L 156 (179)
T 2f42_A 105 DYLCGKISFELMR--EPCIT--PSGITYDRKDIEEHLQR----V-GHFDPVTRSPLTQDQL 156 (179)
T ss_dssp GGGBCTTTCSBCS--SEEEC--TTSCEEEHHHHHHHHHH----T-CSBCTTTCCBCCGGGC
T ss_pred HhhcccCccccCC--CCeEC--CCCCEECHHHHHHHHHh----C-CCCCCCCcCCCChhhC
Confidence 3568999999994 44444 68999999998877642 1 1259999999977654
No 279
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.06 E-value=0.046 Score=51.19 Aligned_cols=56 Identities=16% Similarity=0.389 Sum_probs=45.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 180 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLN 180 (995)
|.-||+++.|......||+ ++|..|| -|.|..-.. -+|||.|.+++.|..|+..+.
T Consensus 5 R~HV~~l~FP~ewKt~Di~---~lFs~fg---gv~I~WidD----------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 5 SDHVLHVTFPKEWKTSDLY---QLFSAFG---NIQISWIDD----------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEEECCTTCCHHHHH---HHTTTSE---EEEEEEEET----------TEEEEEEEEECHHHHHHHHHT
T ss_pred CCeEEEEeCChhhhhHHHH---HHHhccC---CEEEEEEcC----------CeEEEEecCHHHHHHHHHhcc
Confidence 5567888999999999997 8999999 555643222 269999999999999999874
No 280
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.89 E-value=0.026 Score=54.93 Aligned_cols=79 Identities=20% Similarity=0.397 Sum_probs=53.3
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEE-EeecCC------CCcccCCC--CCcEEEEEeCCHHHHHHHHHHh
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVS-ISRTAT------GDIQHSAN--NSCCVYITYSREDDAIRCIQSV 179 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIv-Inrd~~------g~~q~~~~--~rgsAYVTFsrkEDA~rAIqaL 179 (995)
..-|-|-|.|+..+. .+| ++|++||.|++-+ +.+... ......|. ...-.+|||+++.+|.+|++ -
T Consensus 7 e~~VtVFGFp~~~~~-~VI---~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~ 81 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVI---AYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-E 81 (132)
T ss_dssp -CEEEEECCCGGGHH-HHH---HHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-T
T ss_pred ceEEEEEecCHHHHH-HHH---HHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-h
Confidence 456889999988744 566 7999999999832 221000 00001111 24568999999999999998 5
Q ss_pred CCCCCCCeEEEEE
Q 001928 180 HSYILDGRPLRAC 192 (995)
Q Consensus 180 NG~~LdGRvLRAS 192 (995)
||..+.|..|-|-
T Consensus 82 NG~ii~G~mIGV~ 94 (132)
T 3p3d_A 82 NGAVFNGVLLGVI 94 (132)
T ss_dssp TTCEETTEECEEE
T ss_pred CCeEeCcEEEEEE
Confidence 9999999766554
No 281
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.83 E-value=0.053 Score=50.70 Aligned_cols=56 Identities=16% Similarity=0.375 Sum_probs=43.4
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 180 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLN 180 (995)
+.-||+++.|......||+ ++|..||-|.==.|+ + -.|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l~FP~ewKt~DI~---~lFs~fggv~I~Wid-D------------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHVTFPKEWKTSDLY---QLFSAFGNIQISWID-D------------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEEECCTTCCHHHHH---HHHTTTCSCCCEEEE-T------------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhhhHHHH---HHhhccCCEEEEEEc-C------------CeEEEEecCHHHHHHHHHhcc
Confidence 3447777999999999997 799999944322222 1 269999999999999999874
No 282
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=93.41 E-value=0.27 Score=44.86 Aligned_cols=69 Identities=20% Similarity=0.230 Sum_probs=52.2
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC
Q 001928 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L 184 (995)
..|-|..||+.+++|+++ +.++.++++.-..-...+... .+..-..|||.|.+.|++..-++.+||..+
T Consensus 2 ~KvVIRrLPP~LteeeF~---~~l~~~~~~d~~~fv~G~~s~---~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQ---EHLQPMPEHDYFEFFSNDTSL---YPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHH---HHHCSCCCEEEEEEEESCCSS---TTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHH---HHhcCcccceEEEEeCCccCC---CCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 357899999999999986 789998876544443322211 122345799999999999999999999876
No 283
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.50 E-value=0.087 Score=49.13 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=53.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHh-CCCCCCCeEEEEEeccCCccccc--------ccCCCCCCCCCcccccCCCCCCCccHH
Q 001928 159 SCCVYITYSREDDAIRCIQSV-HSYILDGRPLRACFGTTKYCHAW--------IRNMPCSVPDCLYLHDFGSQEDSFTKD 229 (995)
Q Consensus 159 rgsAYVTFsrkEDA~rAIqaL-NG~~LdGRvLRASfGTTKYCs~F--------LRn~~C~NpdCmYLHE~g~e~DsfTKe 229 (995)
.|.++|+|.+.++|++||..+ ||..++| .|++.+++.+.-..- ...........+|+-.+.. ..|.+
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~---~~t~~ 88 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGN---NGNKT 88 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCS---CCSCH
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCC---CCCHH
Confidence 578899999999999999999 9999999 999999876432211 1223334445667665543 45888
Q ss_pred HHHHhhcc
Q 001928 230 EIVSAFTR 237 (995)
Q Consensus 230 Em~s~~tr 237 (995)
||......
T Consensus 89 ~l~~~F~~ 96 (150)
T 2i2y_A 89 ELERAFGY 96 (150)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88765544
No 284
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.59 E-value=0.055 Score=61.51 Aligned_cols=54 Identities=13% Similarity=0.284 Sum_probs=39.2
Q ss_pred CEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHH
Q 001928 110 NLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQ 177 (995)
Q Consensus 110 NLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIq 177 (995)
-.|||- .|.++.+.+|+ +||.|||+|.+|.+.++. +.+|-|+|.++++|..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~---~y~~~~g~i~~~~~~~~~----------g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFL---KYLSQFGPINNHFFYESF----------GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHH---HHHGGGSCCCCEEEECSS----------SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHH---HHHHhcCCcceEEEEccC----------CeEEEEEeCCHHHHHHHHh
Confidence 468998 48888888986 899999999999998643 4689999999988885543
No 285
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.14 E-value=0.78 Score=43.19 Aligned_cols=67 Identities=30% Similarity=0.392 Sum_probs=49.8
Q ss_pred CCEEEEeCCCCCCChHHHHHhHhhhcC-C----CceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCC
Q 001928 109 RNLVYIIGLPINLADEDLLQRKEYFGQ-Y----GKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYI 183 (995)
Q Consensus 109 KNLVYVvGLP~~IAeEDLLRk~EyFGQ-Y----GKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~ 183 (995)
+..|.|.|||+.+.+ |+|+ -||.. - |.|..|.... ..|+|||.+.+.|.+-++.- -..
T Consensus 8 ~~~I~V~~lPp~~~~-e~L~--LYFEn~rrsGGG~V~~v~~~~-------------~~AvItF~d~~va~rVL~k~-~H~ 70 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPD-ELLT--LYFENRRRSGGGPVLSWQRLG-------------CGGVLTFREPADAERVLAQA-DHE 70 (104)
T ss_dssp CCEEEEESCCTTSCH-HHHH--HHHHCTTTTCCCCEEEEEEET-------------TEEEEEESSHHHHHHHHTCS-CCB
T ss_pred ccEEEEECCCCCCCh-hHhe--EEEeCCCcCCCceeeEEEEcC-------------CcEEEEEcChHHHHHHhcCC-cce
Confidence 567999999999865 4553 69988 2 7888887631 46999999999998877652 246
Q ss_pred CCCeEEEEE
Q 001928 184 LDGRPLRAC 192 (995)
Q Consensus 184 LdGRvLRAS 192 (995)
|.|-.|.|.
T Consensus 71 L~~~~LsV~ 79 (104)
T 2dhx_A 71 LHGAQLSLR 79 (104)
T ss_dssp SSSSBCEEE
T ss_pred ecCeEEEEE
Confidence 677666663
No 286
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.90 E-value=0.28 Score=43.10 Aligned_cols=52 Identities=27% Similarity=0.684 Sum_probs=38.2
Q ss_pred ccCCCCCCcccCCCccCCCcccc-CCCCchhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPC-NCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC-~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
|....|+||.+.+... .-| .|++.+=.-|..+-+. +..+..||.||+++.-+
T Consensus 13 ~~i~~C~IC~~~i~~g----~~C~~C~h~fH~~Ci~kWl~----~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG----QSCETCGIRMHLPCVAKYFQ----SNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSS----EECSSSCCEECHHHHHHHST----TCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccC----CccCCCCchhhHHHHHHHHH----hcCCCCCCCCcCcCCCC
Confidence 4568999999999642 245 7888877778877753 33457899999987643
No 287
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=89.85 E-value=0.5 Score=44.06 Aligned_cols=77 Identities=8% Similarity=-0.060 Sum_probs=44.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEEeccCCccc-----ccccCCCCCCCCCcccccCCCCCCCccHHHHH
Q 001928 158 NSCCVYITYSREDDAIRCIQSVHSYILDGRPLRACFGTTKYCH-----AWIRNMPCSVPDCLYLHDFGSQEDSFTKDEIV 232 (995)
Q Consensus 158 ~rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRASfGTTKYCs-----~FLRn~~C~NpdCmYLHE~g~e~DsfTKeEm~ 232 (995)
.+|++||+|.+.++|++||..+++....+..+.+...+..... ............++|+--+.. ..|.+||.
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~---~~~~~~l~ 88 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTY---RTSPDTLR 88 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCT---TCCHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCC---CCCHHHHH
Confidence 4789999999999999999998874433322222211110000 011122233456777766654 37888887
Q ss_pred Hhhcc
Q 001928 233 SAFTR 237 (995)
Q Consensus 233 s~~tr 237 (995)
.....
T Consensus 89 ~~F~~ 93 (158)
T 2kn4_A 89 RVFEK 93 (158)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66544
No 288
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=89.70 E-value=0.14 Score=42.91 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=39.4
Q ss_pred CCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccccchhc
Q 001928 7 KTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEKIVG 67 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~I~~ 67 (995)
..||||.+.|. |-...| +||+-+|+-|..+.++ .++.||-+|.+...+.++.
T Consensus 4 ~~CpIs~~~m~--dPV~~~-~sG~~yer~~I~~~l~------~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 4 MLCAISGKVPR--RPVLSP-KSRTIFEKSLLEQYVK------DTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp CCCTTTCSCCS--SEEEET-TTTEEEEHHHHHHHHH------HHSBCTTTCCBCCGGGCEE
T ss_pred EEecCCCCCCC--CCEEeC-CCCcEEcHHHHHHHHH------hCCCCcCCcCCCChhhcEE
Confidence 57999999996 443322 7899988888877764 1467999999998876643
No 289
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=87.05 E-value=0.43 Score=53.10 Aligned_cols=60 Identities=18% Similarity=0.409 Sum_probs=38.9
Q ss_pred ccCCCCCCcccCCCccC-CCcccc---CCCCchhhhhHHHHHHhhhcc-----CCCCCCcccccccccc
Q 001928 4 KAEKTCPLCAEEMDLTD-QQLKPC---NCGYEICVWCWNHIMEMAEKD-----GTEGRCPACRTAYDKE 63 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD-~~F~PC---~CGYQIC~fC~h~I~~~aek~-----~~~grCPACRrpYdee 63 (995)
|+..+|+||++.+...+ ..-+.| +||..+-.-|..+=.+...+. -.-|.||-||++..-+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 35579999999986423 233668 599887777776654321110 1237899999977643
No 290
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=81.55 E-value=1.1 Score=46.52 Aligned_cols=52 Identities=27% Similarity=0.647 Sum_probs=40.4
Q ss_pred cCCCCCCcccCCCccCCCccccC-CCCchhhhhHHHHHHhhhccCCCCCCccccccccccc
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPCN-CGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEK 64 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC~-CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~ 64 (995)
.-..|.+|.+-+-. -+-|+ |+.++=..|.++.. +...+.+||.|+.++..+.
T Consensus 179 ~i~~C~iC~~iv~~----g~~C~~C~~~~H~~C~~~~~----~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 179 AVKICNICHSLLIQ----GQSCETCGIRMHLPCVAKYF----QSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp TCCBCTTTCSBCSS----CEECSSSCCEECHHHHHHHT----TTCSSCBCTTTCCBCCSCC
T ss_pred CCCcCcchhhHHhC----CcccCccChHHHHHHHHHHH----HhCCCCCCCCCCCCCCCCC
Confidence 45789999999853 36775 88888888998875 3445679999999887653
No 291
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=81.24 E-value=2.3 Score=39.52 Aligned_cols=68 Identities=22% Similarity=0.274 Sum_probs=43.8
Q ss_pred EEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhCCCCC
Q 001928 111 LVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVHSYIL 184 (995)
Q Consensus 111 LVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLNG~~L 184 (995)
.|-|..||+.+++|+++ +.++.+=+ +.-..=..+.....+..-..|||.|.+.|+...=.+.+||..+
T Consensus 11 KvVIRrLPP~Ltee~F~---~~l~~~~~---~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLE---EQLRPLPA---HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CEEEECCCSCSCHHHHT---TTTSCCSS---EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred eEEEeCCCCCCCHHHHH---HHhCCcCc---cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 35688999999998875 55555433 2111100111111112234689999999999999999999876
No 292
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=68.66 E-value=1.6 Score=37.44 Aligned_cols=26 Identities=31% Similarity=0.705 Sum_probs=21.4
Q ss_pred ccCCcccccccCCCCCCCCCcccccCC
Q 001928 194 GTTKYCHAWIRNMPCSVPDCLYLHDFG 220 (995)
Q Consensus 194 GTTKYCs~FLRn~~C~NpdCmYLHE~g 220 (995)
+++.-|..||+| .|.+.+|.|+|...
T Consensus 40 ~~~~vC~~flkG-~C~r~~C~y~H~~~ 65 (70)
T 3d2q_A 40 NTVTVCMDYIKG-RCSREKCKYFHPPA 65 (70)
T ss_dssp TEEEBCHHHHTT-CCCCTTCCSBCCCH
T ss_pred CcceeccccCcC-CCCCCCcCeeCCHH
Confidence 445579999996 79999999999753
No 293
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.04 E-value=2.7 Score=36.64 Aligned_cols=26 Identities=23% Similarity=0.375 Sum_probs=16.7
Q ss_pred CCcccccccCCCCCCCCCcccccCCC
Q 001928 196 TKYCHAWIRNMPCSVPDCLYLHDFGS 221 (995)
Q Consensus 196 TKYCs~FLRn~~C~NpdCmYLHE~g~ 221 (995)
+.-|.+||+.-.|.+++|.|+|....
T Consensus 38 ~~~C~~f~~~G~C~~~~C~f~H~~~~ 63 (77)
T 2d9n_A 38 MPECYFYSKFGECSNKECPFLHIDPE 63 (77)
T ss_dssp SCBCHHHHHTCCCCCSSCSSBCCCTT
T ss_pred CCCCcccCCCCccCCCCeeccCCCcc
Confidence 34577777755677777777776543
No 294
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=64.45 E-value=8.5 Score=43.99 Aligned_cols=57 Identities=18% Similarity=0.423 Sum_probs=44.1
Q ss_pred cCCEEEEeCCCCCCChHHHHHhHhhhcCCCceEEEEEeecCCCCcccCCCCCcEEEEEeCCHHHHHHHHHHhC
Q 001928 108 QRNLVYIIGLPINLADEDLLQRKEYFGQYGKVLKVSISRTATGDIQHSANNSCCVYITYSREDDAIRCIQSVH 180 (995)
Q Consensus 108 QKNLVYVvGLP~~IAeEDLLRk~EyFGQYGKIiKIvInrd~~g~~q~~~~~rgsAYVTFsrkEDA~rAIqaLN 180 (995)
.|..||++++|..+...+|. +.|..||.| .|..-. .-.|||.|.+.|.|..+++++.
T Consensus 438 ~R~~vl~v~f~~~~~~~~i~---~~fs~fg~v---~V~wid----------dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 438 KRDHVLHVTFPKEWKTSDLY---QLFSAFGNI---QISWID----------DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CGGGEEEEECCTTCCHHHHH---HHGGGGCCC---EEEECS----------SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcCcEEEEeCCCCCCHHHHH---HHHHhcCCE---EEEEEc----------CCeEEEEECCHHHHHHHHHHHH
Confidence 45668888899999888885 799999943 333211 1259999999999999999986
No 295
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=62.95 E-value=0.6 Score=43.70 Aligned_cols=42 Identities=26% Similarity=0.619 Sum_probs=33.5
Q ss_pred CCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCcccccccccc
Q 001928 7 KTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKE 63 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee 63 (995)
..||.|--+|+.++ +|..|..|-..+. ..++||-|..+...=
T Consensus 33 ~~CP~Cq~eL~~~g--------~~~hC~~C~~~f~-------~~a~CPdC~q~LevL 74 (101)
T 2jne_A 33 LHCPQCQHVLDQDN--------GHARCRSCGEFIE-------MKALCPDCHQPLQVL 74 (101)
T ss_dssp CBCSSSCSBEEEET--------TEEEETTTCCEEE-------EEEECTTTCSBCEEE
T ss_pred ccCccCCCcceecC--------CEEECccccchhh-------ccccCcchhhHHHHH
Confidence 68999999998754 5666888887774 478999999988653
No 296
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=59.74 E-value=1.3 Score=53.10 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=23.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEE
Q 001928 159 SCCVYITYSREDDAIRCIQSVHSYILDGRPLRA 191 (995)
Q Consensus 159 rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRA 191 (995)
++++.+.=...++|.+-|..+-+.. .+.+-+
T Consensus 224 t~YgL~cda~n~~AV~rL~~~K~Rp--~KPl~v 254 (761)
T 3vth_A 224 GGFHLAVNALDDEAVATLRRRKKRY--GKPFAV 254 (761)
T ss_dssp SSEEEECBTTCHHHHHHHHHHHTCC--SSCCCE
T ss_pred cEEEEEecCCCHHHHHHHHHHhCCC--CCCeEE
Confidence 4677788788899999999988865 444433
No 297
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=59.18 E-value=2.7 Score=36.50 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=13.3
Q ss_pred CCcccccccCCCCCCCCCcccccCC
Q 001928 196 TKYCHAWIRNMPCSVPDCLYLHDFG 220 (995)
Q Consensus 196 TKYCs~FLRn~~C~NpdCmYLHE~g 220 (995)
+.-|.+||+.-.|.+++|.|+|...
T Consensus 44 ~~~C~~f~~~G~C~~~~C~y~H~~p 68 (72)
T 2rhk_C 44 MSECYFYSKFGECSNKECPFLHIDP 68 (72)
T ss_dssp CCBCHHHHHHSCCSBTTCCSBCCCC
T ss_pred CCcccccCCCCCCCCCCeeccCCCc
Confidence 3345555554455555555555543
No 298
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=55.59 E-value=7.4 Score=36.58 Aligned_cols=47 Identities=17% Similarity=0.400 Sum_probs=34.5
Q ss_pred CCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001928 8 TCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 8 ~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
.|+.|--++-+ --+--+|..-+|.-|...+.. ..+..||.||.+...
T Consensus 3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~-----~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEK-----KGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHH-----TTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEE---EeeeccccccHHHHHHHHHHh-----ccCCCCcCcCCeeee
Confidence 48889888866 344558889877777766532 357899999998754
No 299
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=52.55 E-value=5.7 Score=39.22 Aligned_cols=49 Identities=20% Similarity=0.519 Sum_probs=39.8
Q ss_pred cCCCCCCcccCCCccCCCcccc-CCCCchhhhhHHHHHHhhhccCCCCCCccccc
Q 001928 5 AEKTCPLCAEEMDLTDQQLKPC-NCGYEICVWCWNHIMEMAEKDGTEGRCPACRT 58 (995)
Q Consensus 5 ~d~~CPLC~EelD~TD~~F~PC-~CGYQIC~fC~h~I~~~aek~~~~grCPACRr 58 (995)
++..|.+|..+|.+-+..-..| .|.+.||.-|=.-. +.+..-.|-.|++
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~-----~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAH-----PEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECC-----SSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccccc-----CCCCcEeeHHHHH
Confidence 5789999999999988888999 89999999997543 2345677777776
No 300
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=52.29 E-value=4.3 Score=36.40 Aligned_cols=26 Identities=31% Similarity=0.623 Sum_probs=22.0
Q ss_pred ccCCcccccccCCCCCCCCCcccccCC
Q 001928 194 GTTKYCHAWIRNMPCSVPDCLYLHDFG 220 (995)
Q Consensus 194 GTTKYCs~FLRn~~C~NpdCmYLHE~g 220 (995)
++.--|..||||. |.+.+|.|+|-..
T Consensus 41 ~~~~vC~dflkG~-C~r~~C~y~H~~~ 66 (83)
T 3d2n_A 41 GRVIACFDSLKGR-CSRENCKYLHPPP 66 (83)
T ss_dssp TEEECCHHHHTTC-CCCSSCSSCCCCH
T ss_pred CceeehhHhhhcc-ccCCCcceeCChH
Confidence 4456899999985 9999999999865
No 301
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=51.54 E-value=1.8 Score=39.26 Aligned_cols=41 Identities=24% Similarity=0.660 Sum_probs=32.8
Q ss_pred CCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001928 7 KTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
..||.|--+|+.+.. |..|..|-..+. .++.||-|.++...
T Consensus 3 ~~CP~C~~~l~~~~~--------~~~C~~C~~~~~-------~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--------TAHCETCAKDFS-------LQALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECSS--------EEECTTTCCEEE-------EEEECSSSCSCCCE
T ss_pred CCCCCCCCccccCCC--------ceECccccccCC-------CcccCcchhhHHHH
Confidence 689999999987554 666888888773 46699999998865
No 302
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=48.60 E-value=3.6 Score=42.95 Aligned_cols=30 Identities=30% Similarity=0.753 Sum_probs=23.6
Q ss_pred cCCcccccccCCCCCC-CCCcccccCCCCCCC
Q 001928 195 TTKYCHAWIRNMPCSV-PDCLYLHDFGSQEDS 225 (995)
Q Consensus 195 TTKYCs~FLRn~~C~N-pdCmYLHE~g~e~Ds 225 (995)
....|.+|.|| -|.. .+|.|+|++..+.|.
T Consensus 69 ~~~~C~ffakG-~C~~G~~C~y~H~lPt~~d~ 99 (240)
T 3u1l_A 69 QLFFCLFFAKG-MCCLGPKCEYLHHIPDEEDI 99 (240)
T ss_dssp CCSBCHHHHTT-CCSCGGGCSSBBSCCCHHHH
T ss_pred CCeEcCccccC-CCCCCCCCCccCCCCCccch
Confidence 45699999996 5666 789999999865443
No 303
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.03 E-value=5.1 Score=36.82 Aligned_cols=26 Identities=27% Similarity=0.659 Sum_probs=21.4
Q ss_pred ccCCcccccccCCCCCCCCCcccccCC
Q 001928 194 GTTKYCHAWIRNMPCSVPDCLYLHDFG 220 (995)
Q Consensus 194 GTTKYCs~FLRn~~C~NpdCmYLHE~g 220 (995)
+++--|..||+| .|.+.+|.|+|-..
T Consensus 54 ~~~~vC~~flkG-~C~r~~C~y~H~~~ 79 (98)
T 2e5s_A 54 NTVTVCMDYIKG-RCMREKCKYFHPPA 79 (98)
T ss_dssp CEEEBCHHHHHT-CCCCTTCCSBCCCH
T ss_pred CccccchhhccC-CCCCCCcCccCChH
Confidence 444579999996 89999999999654
No 304
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=46.26 E-value=23 Score=32.49 Aligned_cols=61 Identities=16% Similarity=0.453 Sum_probs=40.2
Q ss_pred CcccCCCCCCcccCCCccCCCccccCC--CCchhhhhHHHHHHhhhccCCCCCCcc-ccccccccch
Q 001928 2 SDKAEKTCPLCAEEMDLTDQQLKPCNC--GYEICVWCWNHIMEMAEKDGTEGRCPA-CRTAYDKEKI 65 (995)
Q Consensus 2 sDe~d~~CPLC~EelD~TD~~F~PC~C--GYQIC~fC~h~I~~~aek~~~~grCPA-CRrpYdee~I 65 (995)
.+-.-..|-||-|.| .|.+|.-||- ++..|.-|-...++. +....+-.||. =|-|..-..+
T Consensus 11 ~~~a~l~CtlC~erL--EdtHFVQCPsv~~HkFCFpCsr~sIk~-q~~~~EvyCPSG~kCpL~gS~~ 74 (93)
T 2cs3_A 11 ANSGPLCCTICHERL--EDTHFVQCPSVPSHKFCFPCSRESIKA-QGATGEVYCPSGEKCPLVGSNV 74 (93)
T ss_dssp CSCCSCCCSSSCSCC--SSTTSEECSSCSSCEECHHHHHHHHHH-HHSSSCCCCTTSSCCBCSSSSS
T ss_pred CCCCeeEeecchhhh--ccCceeeCCCccCCeeeccccHHHHHh-cCCCCcEECCCCCccccCCCcC
Confidence 344457899999998 5789999987 778777777554431 12456778883 2334444443
No 305
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=45.19 E-value=5.7 Score=36.16 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=20.9
Q ss_pred cCCcccccccCCCCCCCCCcccccCC
Q 001928 195 TTKYCHAWIRNMPCSVPDCLYLHDFG 220 (995)
Q Consensus 195 TTKYCs~FLRn~~C~NpdCmYLHE~g 220 (995)
+.--|..|||+ .|.+++|.|+|-+.
T Consensus 50 ~~~vC~dflkG-~C~r~~Cky~H~~~ 74 (89)
T 2rpp_A 50 RVIACFDSLKG-RCSRENCKYLHPPT 74 (89)
T ss_dssp BEEBCHHHHHT-CCCCTTCCSBCCCH
T ss_pred ceeeehhhhhC-cCCCCCcceecCHH
Confidence 34579999997 69999999999764
No 306
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=42.70 E-value=9.9 Score=36.75 Aligned_cols=37 Identities=22% Similarity=0.612 Sum_probs=29.2
Q ss_pred ccCCCCCCcccCCCccCCCcccc-CCCCchhhhhHHHH
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPC-NCGYEICVWCWNHI 40 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC-~CGYQIC~fC~h~I 40 (995)
+++..|.+|..+|.+.+..-..| .|.+.||.-|=..+
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 35689999999998776666777 78888888886654
No 307
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=41.15 E-value=17 Score=30.90 Aligned_cols=27 Identities=22% Similarity=0.684 Sum_probs=23.8
Q ss_pred cCCcccccccCCCCCC-CCCcccccCCC
Q 001928 195 TTKYCHAWIRNMPCSV-PDCLYLHDFGS 221 (995)
Q Consensus 195 TTKYCs~FLRn~~C~N-pdCmYLHE~g~ 221 (995)
.|+-|..|++.-.|.. ..|.|+|...+
T Consensus 11 kt~~C~~f~~~G~C~~G~~C~f~H~~~e 38 (77)
T 1m9o_A 11 KTELCRTYSESGRCRYGAKCQFAHGLGE 38 (77)
T ss_dssp CSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred cchhCHHhhhCCCcCCCCCccCCCCChh
Confidence 5788999999999996 89999998864
No 308
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=40.29 E-value=8.3 Score=36.45 Aligned_cols=29 Identities=31% Similarity=0.907 Sum_probs=19.6
Q ss_pred cc-CCCCchhhhhHHHHHHhhhccCCCCCCccccccccccc
Q 001928 25 PC-NCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDKEK 64 (995)
Q Consensus 25 PC-~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYdee~ 64 (995)
-| .|||.+ + .++ ....+||.|+...-+.+
T Consensus 69 ~C~~CG~~F---~-~~~-------~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 69 QCRKCGFVF---K-AEI-------NIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp BBTTTCCBC---C-CCS-------SCCSSCSSSCCCCBCCC
T ss_pred ChhhCcCee---c-ccC-------CCCCCCcCCCCCccCCc
Confidence 36 789994 1 222 35799999999765543
No 309
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.87 E-value=6.2 Score=36.26 Aligned_cols=24 Identities=29% Similarity=0.664 Sum_probs=20.1
Q ss_pred cccccccCCCCCCC--CCcccccCCCC
Q 001928 198 YCHAWIRNMPCSVP--DCLYLHDFGSQ 222 (995)
Q Consensus 198 YCs~FLRn~~C~Np--dCmYLHE~g~e 222 (995)
.|..||||. |.+. +|.|+|+....
T Consensus 22 VCr~FlrG~-C~rgd~~C~FsH~~~~~ 47 (98)
T 2e5s_A 22 VCREFQRGN-CARGETDCRFAHPADST 47 (98)
T ss_dssp BCSHHHHTC-CSSHHHHCSSBCCSSCC
T ss_pred hhHHHhcCc-CCCCCCCCCCcCCchhc
Confidence 599999955 9997 59999998653
No 310
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=35.59 E-value=12 Score=32.02 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=19.2
Q ss_pred cccccccCCCCCCC--CCcccccCCC
Q 001928 198 YCHAWIRNMPCSVP--DCLYLHDFGS 221 (995)
Q Consensus 198 YCs~FLRn~~C~Np--dCmYLHE~g~ 221 (995)
-|..|++|. |.+. +|.|+|+...
T Consensus 8 vC~~f~~G~-C~rg~~~C~f~H~~~~ 32 (70)
T 3d2q_A 8 VCREYQRGN-CNRGENDCRFAHPADS 32 (70)
T ss_dssp BCHHHHTTC-CSSCTTTCSSBCCCTT
T ss_pred hCHHHhcCC-CCCCCCCCCCccCccc
Confidence 599999876 9997 5999998753
No 311
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.25 E-value=17 Score=31.64 Aligned_cols=27 Identities=30% Similarity=0.880 Sum_probs=22.2
Q ss_pred cCCcccccccCCCCCC-CCCcccccCCCC
Q 001928 195 TTKYCHAWIRNMPCSV-PDCLYLHDFGSQ 222 (995)
Q Consensus 195 TTKYCs~FLRn~~C~N-pdCmYLHE~g~e 222 (995)
.+.-|.+||+| .|.+ .+|.|+|++...
T Consensus 9 k~~~C~~fl~G-~C~~G~~C~fsH~~~~~ 36 (77)
T 2d9n_A 9 KTVVCKHWLRG-LCKKGDQCEFLHEYDMT 36 (77)
T ss_dssp TTSBCHHHHTT-CCSCTTSSSSBCSCCTT
T ss_pred cceeCHhHccC-cCCCCCCCCCccccccC
Confidence 45789999994 5998 689999998753
No 312
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=34.30 E-value=17 Score=32.58 Aligned_cols=23 Identities=35% Similarity=0.823 Sum_probs=20.0
Q ss_pred cccccccCCCCCCC--CCcccccCCC
Q 001928 198 YCHAWIRNMPCSVP--DCLYLHDFGS 221 (995)
Q Consensus 198 YCs~FLRn~~C~Np--dCmYLHE~g~ 221 (995)
.|..|||| .|.+. +|.|.|....
T Consensus 11 VCr~FlrG-~C~r~d~~C~f~H~~~~ 35 (83)
T 3d2n_A 11 VCREFQRG-TCSRPDTECKFAHPSKS 35 (83)
T ss_dssp BCTTGGGT-CCCSCTTTCSSBCCCTT
T ss_pred hcHHHhcC-CCCCCCCCCCCcCCCcc
Confidence 59999994 59998 9999999864
No 313
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=32.91 E-value=13 Score=33.87 Aligned_cols=24 Identities=29% Similarity=0.639 Sum_probs=20.6
Q ss_pred cccccccCCCCCCC--CCcccccCCCC
Q 001928 198 YCHAWIRNMPCSVP--DCLYLHDFGSQ 222 (995)
Q Consensus 198 YCs~FLRn~~C~Np--dCmYLHE~g~e 222 (995)
.|..|||| .|.+. +|.|+|.....
T Consensus 19 VCrdFlrG-~C~r~d~~CrfsH~~~~~ 44 (89)
T 2rpp_A 19 VCRQFQRG-TCSRSDEECKFAHPPKSC 44 (89)
T ss_dssp BCHHHHHT-CCCCCTTTSSSBCCCSSS
T ss_pred hchHHhcC-CCCCCCCCCCCcCCCccc
Confidence 69999995 59997 89999998753
No 314
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=32.25 E-value=16 Score=31.57 Aligned_cols=27 Identities=30% Similarity=0.870 Sum_probs=22.1
Q ss_pred ccCCcccccccCCCCCC-CCCcccccCCC
Q 001928 194 GTTKYCHAWIRNMPCSV-PDCLYLHDFGS 221 (995)
Q Consensus 194 GTTKYCs~FLRn~~C~N-pdCmYLHE~g~ 221 (995)
..+.-|.+||+| .|.+ .+|.|+|+...
T Consensus 14 ~k~~vCk~fl~G-~C~~G~~C~fsH~~~~ 41 (72)
T 2rhk_C 14 EKTVVCKHWLRG-LCKKGDQCEFLHEYDM 41 (72)
T ss_dssp CCCSBCHHHHTT-CCCCGGGSSSBCSCCT
T ss_pred CcCeeCHHHhcC-CCCCCCCCCCcccccc
Confidence 345689999995 5999 79999999754
No 315
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.14 E-value=27 Score=31.34 Aligned_cols=33 Identities=24% Similarity=0.708 Sum_probs=24.3
Q ss_pred ccCCCCCCcccCCCccCCCcccc-CCCCchhhhh
Q 001928 4 KAEKTCPLCAEEMDLTDQQLKPC-NCGYEICVWC 36 (995)
Q Consensus 4 e~d~~CPLC~EelD~TD~~F~PC-~CGYQIC~fC 36 (995)
+.+..|.+|-+.|-+-=..-.+| .|.+.||..|
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 45789999999997654455666 6777777666
No 316
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=24.19 E-value=8.8 Score=46.20 Aligned_cols=32 Identities=3% Similarity=0.015 Sum_probs=24.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEE
Q 001928 159 SCCVYITYSREDDAIRCIQSVHSYILDGRPLRAC 192 (995)
Q Consensus 159 rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRAS 192 (995)
+|+.-+.=.+.++|.+.|...-+.. .+.+-|=
T Consensus 222 ggy~L~cda~n~~aV~~lr~~K~Rp--~kP~avm 253 (772)
T 4g9i_A 222 GGIHLACDAANEEVVAELRRRTFRP--QKPFAIM 253 (772)
T ss_dssp SSBEEECCTTCHHHHHHHHHHTTCS--SSCCEEE
T ss_pred CeeEEEEecCCHHHHHHHHHhhCCC--CCCcEEE
Confidence 5677788888999999999998876 3554443
No 317
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=24.04 E-value=35 Score=30.71 Aligned_cols=26 Identities=31% Similarity=0.716 Sum_probs=15.1
Q ss_pred CCCCCCccc------CCCccCCCcccc-CCCCc
Q 001928 6 EKTCPLCAE------EMDLTDQQLKPC-NCGYE 31 (995)
Q Consensus 6 d~~CPLC~E------elD~TD~~F~PC-~CGYQ 31 (995)
+-+||+|++ ++|+.-..+-|| .||..
T Consensus 17 tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIk 49 (76)
T 2j9u_B 17 TWVCPICMVSNETQGEFTKDTLPTPICINCGVP 49 (76)
T ss_dssp EEECTTTCCEEEESSCCCTTCSSCCBCTTTCCB
T ss_pred ceECccccccCcCccccCCCCCCCCcccccCcc
Confidence 358999993 334322455666 55554
No 318
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=23.98 E-value=35 Score=31.15 Aligned_cols=23 Identities=26% Similarity=0.795 Sum_probs=0.0
Q ss_pred cCCcccccccCCCCCCCC-Cccccc
Q 001928 195 TTKYCHAWIRNMPCSVPD-CLYLHD 218 (995)
Q Consensus 195 TTKYCs~FLRn~~C~Npd-CmYLHE 218 (995)
.+.-|.+|++| .|.+-+ |.|+|+
T Consensus 12 k~~lC~~f~~G-~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 12 KRELCKFYITG-FCARAENCPYMHG 35 (98)
T ss_dssp CCSBCTTTTTT-CCSCSTTCSSBSS
T ss_pred CCccCcccccC-cCCCCCCCCCCCC
No 319
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=23.45 E-value=2.3e+02 Score=30.04 Aligned_cols=136 Identities=18% Similarity=0.303 Sum_probs=72.3
Q ss_pred ccCCEEEEeCCCCCCC-h----HHHHHh--HhhhcCCCceEEEEEe---ecCCCCcccCCCCCcEEEEEeCCHHHHHHHH
Q 001928 107 IQRNLVYIIGLPINLA-D----EDLLQR--KEYFGQYGKVLKVSIS---RTATGDIQHSANNSCCVYITYSREDDAIRCI 176 (995)
Q Consensus 107 IQKNLVYVvGLP~~IA-e----EDLLRk--~EyFGQYGKIiKIvIn---rd~~g~~q~~~~~rgsAYVTFsrkEDA~rAI 176 (995)
++++.|-|+|+|.... . |.|+.. .|-|-.-|+=.+|.|- +.....+...+.|+- .-|.|....+-++-+
T Consensus 50 iRr~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~-IIvK~~~~~~KErIL 128 (233)
T 2yko_A 50 VKRPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRH-IIVRFTKVEMKEKML 128 (233)
T ss_dssp HTTTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCC-EEEEESSHHHHHHHH
T ss_pred hcccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCe-EEEEecccccHHHHH
Confidence 4578899999999875 1 223321 3567766655555543 322211222334554 678888776665555
Q ss_pred HHh---CCCCCCCeEEEEE--ecc--CCcccc------cccCCCCCCCCCccccc-----CCCCCCCccHHHHHHhh-cc
Q 001928 177 QSV---HSYILDGRPLRAC--FGT--TKYCHA------WIRNMPCSVPDCLYLHD-----FGSQEDSFTKDEIVSAF-TR 237 (995)
Q Consensus 177 qaL---NG~~LdGRvLRAS--fGT--TKYCs~------FLRn~~C~NpdCmYLHE-----~g~e~DsfTKeEm~s~~-tr 237 (995)
++. ....+.|..||.+ |.. -+-+.. .||+... .|-.+|-=- -|.-.---+|+++.... ++
T Consensus 129 kaaR~k~~vtykG~pIrlsaDfSaeTLq~RRew~~Ifk~Lk~knl-qpRilyPakLsf~~eGeiksF~dkqkl~efi~~~ 207 (233)
T 2yko_A 129 RAAREKGRVTLKGKPIRLTVDLSAETLQARREWGPIFNILKEKNF-QPRISYPAKLSFISEGEIKYFIDKQMLRDFVTTR 207 (233)
T ss_dssp HHHHTTSCEEETTEEEEEEECCCHHHHHHHHHTHHHHHHHHHTTC-CCEEETTTEEEEESSSSEEEESSHHHHHHHHTTC
T ss_pred HHHHHhcccccCCCceEEeCCCCHHHHHHHHHHhHHHHHHHHcCC-CcccccccceEEEEcCeEeecCCHHHHHHHHhcC
Confidence 554 5567899998854 432 233333 3666543 355555422 23223233677777654 44
Q ss_pred hhhhhhh
Q 001928 238 SRVQQII 244 (995)
Q Consensus 238 ~~~q~~~ 244 (995)
..+|+++
T Consensus 208 p~l~e~l 214 (233)
T 2yko_A 208 PALKELL 214 (233)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 5566665
No 320
>2czv_C Ribonuclease P protein component 2; RNA binding protein, RNA recognition motif, protein-protein complex, hydrolase; HET: BOG; 2.00A {Pyrococcus horikoshii} SCOP: d.58.59.1
Probab=23.13 E-value=83 Score=29.41 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=59.9
Q ss_pred CCC-CCcccccCCEEEEeCCCCCCChHHHHHh-----HhhhcCCCceE-EEEEe-ecCCCCcccCCCCCcEEEEEeCCHH
Q 001928 99 MHL-TNVRVIQRNLVYIIGLPINLADEDLLQR-----KEYFGQYGKVL-KVSIS-RTATGDIQHSANNSCCVYITYSRED 170 (995)
Q Consensus 99 K~L-anVRVIQKNLVYVvGLP~~IAeEDLLRk-----~EyFGQYGKIi-KIvIn-rd~~g~~q~~~~~rgsAYVTFsrkE 170 (995)
|+| ..||.-.|.+++=+=.+..++.+++.+- .++||.||--. ...|. -+..+ ..+-.=|.-+..+
T Consensus 6 k~lpp~vR~K~RYll~ei~~~~~l~~~~l~~~I~~av~~~fGd~G~~~~~~~v~~f~~~t-------~~~IiRc~r~~~~ 78 (120)
T 2czv_C 6 KTLPPTLRDKNRYIAFEIISDGDFTKDEVKELIWKSSLEVLGETGTAIVKPWLIKFDPNT-------KTGIVRSDREYVE 78 (120)
T ss_dssp CCCCTTTSCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEETTT-------TEEEEEEEGGGHH
T ss_pred CCCCCccccccEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCcchhhccCceEEEEcCCC-------CEEEEEeCchhHH
Confidence 344 4888877777666656667888776431 78999998543 22222 12221 2333344445556
Q ss_pred HHHHHHHHhCCCCCCC-----eEEEEEeccCCccc-ccccC
Q 001928 171 DAIRCIQSVHSYILDG-----RPLRACFGTTKYCH-AWIRN 205 (995)
Q Consensus 171 DA~rAIqaLNG~~LdG-----RvLRASfGTTKYCs-~FLRn 205 (995)
.+..|+..++ .++| ++|+++ ||-|-|. .||+.
T Consensus 79 ~v~aaLtli~--~i~~~~~~~~vl~vS-GTIr~~~~k~l~~ 116 (120)
T 2czv_C 79 YLRFALMLVS--EFNGKRLIIRTLGVS-GTIKRLKRKFLAK 116 (120)
T ss_dssp HHHHHHHTCC--EETTEECEEEEEEEE-SSHHHHHHHHTGG
T ss_pred HHHHHHHhHh--hCCCEEEEEEEeEEC-hhHHHHHHHHHHH
Confidence 6777776654 3344 677777 9999998 78763
No 321
>1v33_A DNA primase small subunit; nucleotidyl transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; 1.80A {Pyrococcus horikoshii} SCOP: d.264.1.1 PDB: 1v34_A* 1g71_A*
Probab=23.11 E-value=29 Score=38.64 Aligned_cols=29 Identities=28% Similarity=0.534 Sum_probs=22.8
Q ss_pred cCCCccCCCccccCC-CCchhhhhHHHHHH
Q 001928 14 EEMDLTDQQLKPCNC-GYEICVWCWNHIME 42 (995)
Q Consensus 14 EelD~TD~~F~PC~C-GYQIC~fC~h~I~~ 42 (995)
.++|.+|...+-|.| |-.||.-||..+..
T Consensus 114 FDID~~d~diRtC~C~~~~iC~kC~~~~~~ 143 (366)
T 1v33_A 114 FDIDAKDLPLRRCEHEPGTVCPICLNDAKE 143 (366)
T ss_dssp EEEEGGGCSSCSSCSCTTCCCHHHHHHHHH
T ss_pred EEecCCcCCcCccCCCCcchHHHHHHHHHH
Confidence 356888887888988 67899999975543
No 322
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=23.07 E-value=8.9 Score=45.53 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=24.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHhCCCCCCCeEEEEE
Q 001928 159 SCCVYITYSREDDAIRCIQSVHSYILDGRPLRAC 192 (995)
Q Consensus 159 rgsAYVTFsrkEDA~rAIqaLNG~~LdGRvLRAS 192 (995)
++++.+.=...++|.+-|..+-+.. .+.+-+-
T Consensus 133 ggYgL~cda~n~~AV~rL~~~K~Rp--~KPlavm 164 (657)
T 3ttc_A 133 GGFHLACDARNSNAVATLRARKHRP--AKPLAVM 164 (657)
T ss_dssp SSEEEEEETTCHHHHHHHHHHTTCS--SSCCCEE
T ss_pred ceeEEEeecCCHHHHHHHHHHhCCC--CCCEEEE
Confidence 5678888888899999999998875 3555443
No 323
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=22.24 E-value=19 Score=30.58 Aligned_cols=26 Identities=23% Similarity=0.620 Sum_probs=0.0
Q ss_pred CCcccccccCCCCCC-CCCcccccCCC
Q 001928 196 TKYCHAWIRNMPCSV-PDCLYLHDFGS 221 (995)
Q Consensus 196 TKYCs~FLRn~~C~N-pdCmYLHE~g~ 221 (995)
|+-|..|+..-.|.. ..|.|+|...+
T Consensus 50 ~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 50 TELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp ---------------------------
T ss_pred CCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 577988887778988 89999998754
No 324
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=21.76 E-value=14 Score=32.11 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=21.6
Q ss_pred CCCCCcccCCCccCCCccccCCCCchhhhhHHHHHHhhhccCCCCCCccccccccc
Q 001928 7 KTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNHIMEMAEKDGTEGRCPACRTAYDK 62 (995)
Q Consensus 7 ~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~I~~~aek~~~~grCPACRrpYde 62 (995)
..||.|..+|..... ...-.||+|++.|.=
T Consensus 9 L~CP~ck~~L~~~~~--------------------------~~~LiC~~cg~~YPI 38 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKS--------------------------KDELICKGDRLAFPI 38 (68)
T ss_dssp CBCTTTCCBCEEETT--------------------------TTEEEETTTTEEEEE
T ss_pred eECCCCCCcCeEeCC--------------------------CCEEEcCCCCcEecC
Confidence 589999988865321 234579999999953
No 325
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=21.30 E-value=36 Score=29.85 Aligned_cols=9 Identities=33% Similarity=0.822 Sum_probs=5.4
Q ss_pred CCCCccccc
Q 001928 50 EGRCPACRT 58 (995)
Q Consensus 50 ~grCPACRr 58 (995)
.-+||.|..
T Consensus 45 ~irCp~CG~ 53 (70)
T 1twf_L 45 AVRCKDCGH 53 (70)
T ss_dssp TTCCSSSCC
T ss_pred CccCCCCCc
Confidence 456766655
No 326
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=20.90 E-value=55 Score=28.78 Aligned_cols=39 Identities=28% Similarity=0.535 Sum_probs=30.9
Q ss_pred CCcccCCCCCCcccCCCccCCCccccCCCCchhhhhHHH
Q 001928 1 MSDKAEKTCPLCAEEMDLTDQQLKPCNCGYEICVWCWNH 39 (995)
Q Consensus 1 msDe~d~~CPLC~EelD~TD~~F~PC~CGYQIC~fC~h~ 39 (995)
+.|++...|..|..+|.+..+..-==.||.-+|.-|-.+
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 356777899999999998766554448999999999765
Done!