Query 001931
Match_columns 995
No_of_seqs 286 out of 550
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 05:09:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 1.6E-29 5.6E-34 239.9 14.4 113 94-206 7-121 (130)
2 4i1k_A B3 domain-containing tr 99.8 3E-19 1E-23 173.2 12.1 99 96-204 44-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.6 4.4E-16 1.5E-20 141.9 10.8 95 98-203 8-102 (104)
4 4b8c_D Glucose-repressible alc 97.0 0.00045 1.5E-08 80.6 4.7 8 469-476 48-55 (727)
5 4b8c_D Glucose-repressible alc 96.1 0.0017 5.8E-08 75.8 2.0 16 462-477 38-53 (727)
6 1na6_A Ecorii, restriction end 94.9 0.047 1.6E-06 61.1 8.1 93 97-190 17-123 (404)
7 3iot_A Maltose-binding protein 89.5 0.082 2.8E-06 57.2 0.7 8 168-175 127-134 (449)
8 3cgm_A SLYD, peptidyl-prolyl C 75.2 5.9 0.0002 38.8 7.1 100 179-294 3-110 (158)
9 2k8i_A SLYD, peptidyl-prolyl C 69.3 12 0.00043 37.1 7.9 102 179-294 3-114 (171)
10 2kfw_A FKBP-type peptidyl-prol 65.6 6.1 0.00021 40.2 5.0 102 179-294 3-114 (196)
11 2kr7_A FKBP-type peptidyl-prol 52.5 34 0.0012 33.0 7.4 105 176-294 4-119 (151)
12 2jng_A Cullin-7, CUL-7; P53 bi 46.3 13 0.00046 35.1 3.3 72 249-334 7-78 (105)
13 4dt4_A FKBP-type 16 kDa peptid 43.8 33 0.0011 34.2 5.9 105 178-294 24-138 (169)
14 3o27_A Putative uncharacterize 42.3 19 0.00064 31.8 3.4 34 171-204 31-65 (68)
15 3p8d_A Medulloblastoma antigen 40.8 23 0.0008 30.9 3.8 55 261-333 3-57 (67)
16 3pr9_A FKBP-type peptidyl-prol 38.3 87 0.003 30.7 7.9 61 224-294 57-123 (157)
17 1mhn_A SurviVal motor neuron p 31.5 33 0.0011 28.3 3.1 29 263-294 2-30 (59)
18 3m7a_A Uncharacterized protein 31.2 37 0.0013 33.2 3.9 46 139-187 84-140 (140)
19 3qii_A PHD finger protein 20; 30.2 37 0.0013 31.0 3.5 54 262-333 19-72 (85)
20 2k75_A Uncharacterized protein 30.1 79 0.0027 28.9 5.7 46 138-203 39-88 (106)
21 2cbp_A Cucumber basic protein; 28.9 25 0.00085 32.0 2.1 19 173-191 18-36 (96)
22 2e63_A KIAA1787 protein; struc 28.5 35 0.0012 34.1 3.3 24 177-200 116-139 (170)
23 4a4f_A SurviVal of motor neuro 28.4 39 0.0013 28.4 3.1 56 262-332 6-61 (64)
24 3s6w_A Tudor domain-containing 27.5 40 0.0014 27.2 2.9 28 264-294 1-28 (54)
25 3pie_A 5'->3' exoribonuclease 24.9 58 0.002 41.3 4.9 64 263-334 1064-1129(1155)
26 1ix5_A FKBP; ppiase, isomerase 24.6 89 0.003 30.1 5.3 61 224-294 58-124 (151)
27 2equ_A PHD finger protein 20-l 23.9 55 0.0019 28.8 3.3 39 263-315 8-46 (74)
28 1whg_A Tubulin specific chaper 23.6 30 0.001 32.9 1.7 56 256-321 24-79 (113)
29 3e0e_A Replication protein A; 23.1 1.8E+02 0.0063 25.9 6.7 73 97-201 13-89 (97)
30 1g5v_A SurviVal motor neuron p 23.1 53 0.0018 29.8 3.1 29 263-294 9-37 (88)
31 1x9u_A Umecyanin; cupredoxin, 22.4 30 0.001 32.5 1.5 20 172-191 23-42 (116)
32 1whl_A Cylindromatosis tumor s 22.3 1.6E+02 0.0054 26.9 6.1 54 263-321 6-61 (95)
33 2yue_A Protein neuralized; str 21.7 62 0.0021 32.2 3.6 21 180-200 107-127 (168)
34 2glw_A PHS018, 92AA long hypot 21.6 88 0.003 28.4 4.3 68 111-191 12-86 (92)
35 2vb2_X Copper protein, cation 20.7 59 0.002 29.3 2.9 26 176-201 59-86 (88)
36 3h8z_A FragIle X mental retard 20.4 1.4E+02 0.0049 28.8 5.7 58 235-293 28-90 (128)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=1.6e-29 Score=239.88 Aligned_cols=113 Identities=31% Similarity=0.511 Sum_probs=104.6
Q ss_pred CCCCceeEEEeccccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeecccchhh
Q 001931 94 NRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVF 173 (995)
Q Consensus 94 ~~~~~~sF~KtLTaSDVs~~GrfsVPKr~AE~~FPpLD~s~~~PsQeLvakDlhGkeW~FRhiyRgqprRhlLTtGWS~F 173 (995)
.++..++|+|+||+|||+++++|+||+++|++|||.++.+..+++++|.++|.+|++|+|||+||+++++|+|++||+.|
T Consensus 7 ~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~F 86 (130)
T 1wid_A 7 GRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRF 86 (130)
T ss_dssp -CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHH
T ss_pred CCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHH
Confidence 46678899999999999999999999999999999999876678899999999999999999999999999999999999
Q ss_pred hccCCCCCCCeEEEEecC--CCcEEEEEEeccCCC
Q 001931 174 VSTKRLFAGDSVLFIRDE--KSQLLLGIRRANRQQ 206 (995)
Q Consensus 174 VreKkLvaGDsVVF~R~e--~GeL~VGIRRA~r~~ 206 (995)
|++|+|++||+|+|+|.+ +++|+|+|||+.+..
T Consensus 87 V~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 87 VKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 999999999999999986 467999999998754
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.79 E-value=3e-19 Score=173.23 Aligned_cols=99 Identities=23% Similarity=0.298 Sum_probs=88.2
Q ss_pred CCceeEEEeccccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeecccchhhhc
Q 001931 96 QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVS 175 (995)
Q Consensus 96 ~~~~sF~KtLTaSDVs~~GrfsVPKr~AE~~FPpLD~s~~~PsQeLvakDlhGkeW~FRhiyRgqprRhlLTtGWS~FVr 175 (995)
+..++|+|+||+||+.++++|+||+++|++|||..+. ++.++|. |++|+|+|+|++. +++|++||+.||+
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~~-------~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~ 113 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISG-------FIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTL 113 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCCS-------EEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHH
T ss_pred CCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCCe-------EEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHH
Confidence 3567999999999999877899999999999997643 6888888 6999999999974 7999999999999
Q ss_pred cCCCCCCCeEEEEecCCC--cEEEEEEeccC
Q 001931 176 TKRLFAGDSVLFIRDEKS--QLLLGIRRANR 204 (995)
Q Consensus 176 eKkLvaGDsVVF~R~e~G--eL~VGIRRA~r 204 (995)
+++|++||+|+|...++. .|.|.|.|+..
T Consensus 114 dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 114 ENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp HTTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred HcCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 999999999999998765 69999999875
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.65 E-value=4.4e-16 Score=141.89 Aligned_cols=95 Identities=25% Similarity=0.407 Sum_probs=83.6
Q ss_pred ceeEEEeccccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeecccchhhhccC
Q 001931 98 TEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTK 177 (995)
Q Consensus 98 ~~sF~KtLTaSDVs~~GrfsVPKr~AE~~FPpLD~s~~~PsQeLvakDlhGkeW~FRhiyRgqprRhlLTtGWS~FVreK 177 (995)
.+.|.|+|+++|. ..+|.||+++++++.+.+. .++.++|..|++|+++|.+++ ++.+|++||..||+++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccCC-------CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHc
Confidence 4689999999994 4599999999998665443 279999999999999999874 5789999999999999
Q ss_pred CCCCCCeEEEEecCCCcEEEEEEecc
Q 001931 178 RLFAGDSVLFIRDEKSQLLLGIRRAN 203 (995)
Q Consensus 178 kLvaGDsVVF~R~e~GeL~VGIRRA~ 203 (995)
+|++||.|+|...++..+.|.|-|..
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~s 102 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGHN 102 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECSS
T ss_pred CCCCCCEEEEEEcCCCeEEEEEECCC
Confidence 99999999999999999999999853
No 4
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.95 E-value=0.00045 Score=80.60 Aligned_cols=8 Identities=25% Similarity=0.148 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 001931 469 QQQLQHLL 476 (995)
Q Consensus 469 qqq~~~~~ 476 (995)
++|+|...
T Consensus 48 ~~~~~~~~ 55 (727)
T 4b8c_D 48 KLQLHLAA 55 (727)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444333
No 5
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.08 E-value=0.0017 Score=75.80 Aligned_cols=16 Identities=13% Similarity=-0.022 Sum_probs=8.6
Q ss_pred CCCCccHHHHHHHHhc
Q 001931 462 SPIAWTQQQQLQHLLQ 477 (995)
Q Consensus 462 ~~~~~~qqqq~~~~~~ 477 (995)
-+..++..+..+++..
T Consensus 38 ~~~~~~~~~~~~~~~~ 53 (727)
T 4b8c_D 38 DPSLLNNPIWKLQLHL 53 (727)
T ss_dssp SCCCTTSHHHHHHHHH
T ss_pred CchhccCchHHHHHHH
Confidence 3444555666655554
No 6
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=94.93 E-value=0.047 Score=61.12 Aligned_cols=93 Identities=22% Similarity=0.269 Sum_probs=67.6
Q ss_pred CceeEEEeccccCCCCC----CceeechhhhhhcCCCCC-CCCCCCceEEEE--EeCCCCeEEEEEEEeC------CCCc
Q 001931 97 PTEFFCKTLTASDTSTH----GGFSVPRRAAEKIFPPLD-YSMQPPAQEIVA--RDLHDTTWTFRHIYRG------QPKR 163 (995)
Q Consensus 97 ~~~sF~KtLTaSDVs~~----GrfsVPKr~AE~~FPpLD-~s~~~PsQeLva--kDlhGkeW~FRhiyRg------qprR 163 (995)
....|+|.|++-|++.. .+|.+|+..++.+||.|+ .....+...+.+ -|...-++.++.+|.+ ++..
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCc
Confidence 34689999999999886 479999988999999888 333345555543 3454556699999986 4455
Q ss_pred eeecccch-hhhccCCCCCCCeEEEEec
Q 001931 164 HLLTTGWS-VFVSTKRLFAGDSVLFIRD 190 (995)
Q Consensus 164 hlLTtGWS-~FVreKkLvaGDsVVF~R~ 190 (995)
|.||. |. .+.--+...+||.++|-+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred eEEee-cCCCCcccccCCCCCEEEEEEe
Confidence 77763 22 3455577889999998764
No 7
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=89.49 E-value=0.082 Score=57.16 Aligned_cols=8 Identities=13% Similarity=0.493 Sum_probs=4.0
Q ss_pred ccchhhhc
Q 001931 168 TGWSVFVS 175 (995)
Q Consensus 168 tGWS~FVr 175 (995)
+-|.+|+.
T Consensus 127 ~Twdel~~ 134 (449)
T 3iot_A 127 KTWEEIPA 134 (449)
T ss_dssp SBGGGHHH
T ss_pred CCHHHHHH
Confidence 34555543
No 8
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=75.16 E-value=5.9 Score=38.84 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=60.2
Q ss_pred CCCCCeEEEE-ec-CCCcEEEEEEeccCCCCCCCCcccCCCccccchHHHHHHHHhcCCcEEEEEcCCCC------CCcc
Q 001931 179 LFAGDSVLFI-RD-EKSQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRAS------PSEF 250 (995)
Q Consensus 179 LvaGDsVVF~-R~-e~GeL~VGIRRA~r~~~~~~ssvissdsm~~gvLAaAahaaat~~~FtV~Y~PRas------~sEF 250 (995)
.+.||.|.+. +. .+|+.+-.-+ +. -++....+ +--+.+|......|..++|..-|... -.-+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~--------~~-f~~G~g~v-ipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE--------LS-YLHGHRNL-IPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE--------EE-EETTSSSS-CHHHHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE--------EE-EEECCCCc-ChHHHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 5678888773 21 4666554433 00 01111122 11244555555677888887765432 2446
Q ss_pred ccchHhHHHHHhcccccCceeeeeeeeccCcccceeeEEEEecc
Q 001931 251 VIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISD 294 (995)
Q Consensus 251 VVp~~kY~eAm~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 294 (995)
.|+++.+.+. ..|.+||+|.+ ++++. +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~--~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED--AEVVPGAQFYA--QDMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT--SCCCTTCEEEE--EETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC--CCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 7888888642 58999999985 44432 567899999975
No 9
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=69.32 E-value=12 Score=37.05 Aligned_cols=102 Identities=17% Similarity=0.138 Sum_probs=60.6
Q ss_pred CCCCCeEEEE-e--cCCCcEEEEEEeccCCCCCCCCcc-cCCCccccchHHHHHHHHhcCCcEEEEEcCCCCC------C
Q 001931 179 LFAGDSVLFI-R--DEKSQLLLGIRRANRQQPALSSSV-ISSDSMHIGILAAAAHAAANNSPFTIFYNPRASP------S 248 (995)
Q Consensus 179 LvaGDsVVF~-R--~e~GeL~VGIRRA~r~~~~~~ssv-issdsm~~gvLAaAahaaat~~~FtV~Y~PRas~------s 248 (995)
.+.||.|++. . .++|+.+-.-+.. -|..+ +....+-. -+.+|......|..++|..-|-..- .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vip-G~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLIS-GLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSCS-HHHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcch-HHHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 5678888773 3 3467765443211 11111 11222222 2455666666788888776664322 3
Q ss_pred ccccchHhHHHHHhcccccCceeeeeeeeccCcccceeeEEEEecc
Q 001931 249 EFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISD 294 (995)
Q Consensus 249 EFVVp~~kY~eAm~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 294 (995)
-+.||++.|.. ...+.+||+|.+ ++++. . +.|+|+.|.+
T Consensus 76 v~~v~~~~f~~--~~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMG--VDELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTT--SSCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCc--ccCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 35788888853 247999999985 55543 3 6899999975
No 10
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=65.61 E-value=6.1 Score=40.21 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=59.2
Q ss_pred CCCCCeEEEE-e--cCCCcEEEEEEeccCCCCCCCCccc-CCCccccchHHHHHHHHhcCCcEEEEEcCCC------CCC
Q 001931 179 LFAGDSVLFI-R--DEKSQLLLGIRRANRQQPALSSSVI-SSDSMHIGILAAAAHAAANNSPFTIFYNPRA------SPS 248 (995)
Q Consensus 179 LvaGDsVVF~-R--~e~GeL~VGIRRA~r~~~~~~ssvi-ssdsm~~gvLAaAahaaat~~~FtV~Y~PRa------s~s 248 (995)
.+.||+|++. + .++|+.+-.-+.. .|..++ ....+ +--+.+|......|..++|+.-|-. .-.
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~v-ipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSL-ISGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCTT------SCCEEESSSSSS-CHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCCC------CCEEEEECCCCc-chHHHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 5688988873 2 3467655433211 121211 12222 1224445555566777888766532 234
Q ss_pred ccccchHhHHHHHhcccccCceeeeeeeeccCcccceeeEEEEecc
Q 001931 249 EFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISD 294 (995)
Q Consensus 249 EFVVp~~kY~eAm~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 294 (995)
=+.||++.|.. ...+.+||+|.+ ++++- .+.|+|+.|.+
T Consensus 76 V~~vp~~~f~~--~~~~~~G~~~~~--~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMG--VDELQVGMRFLA--ETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCC--SSCCCTTCEEEE--EETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCC--ccCcccCCEEEE--ECCCC---cEEEEEEEEcC
Confidence 47788888853 247999999964 55443 57899999975
No 11
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=52.50 E-value=34 Score=33.02 Aligned_cols=105 Identities=16% Similarity=0.119 Sum_probs=61.3
Q ss_pred cCCCCCCCeEEEE-e--cC-CCcEEEEEEeccCCCCCCCCccc-CCCccccchHHHHHHHHhcCCcEEEEEcCCC-----
Q 001931 176 TKRLFAGDSVLFI-R--DE-KSQLLLGIRRANRQQPALSSSVI-SSDSMHIGILAAAAHAAANNSPFTIFYNPRA----- 245 (995)
Q Consensus 176 eKkLvaGDsVVF~-R--~e-~GeL~VGIRRA~r~~~~~~ssvi-ssdsm~~gvLAaAahaaat~~~FtV~Y~PRa----- 245 (995)
.+..+.||.|.+. . .+ +|+.+-.-+.. -|..++ ....+ +--+.+|......|..++|..-|..
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~------~p~~f~~G~g~v-ipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNISK------EPLEFIIGTNQI-IAGLEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTTT------CCEEEETTCCCS-CHHHHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCCC------cCEEEEECCCCc-cHHHHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 3456789998874 2 23 67655443210 111111 11112 1124455555567777887765532
Q ss_pred -CCCccccchHhHHHHHhcccccCceeeeeeeeccCcccceeeEEEEecc
Q 001931 246 -SPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISD 294 (995)
Q Consensus 246 -s~sEFVVp~~kY~eAm~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 294 (995)
.-.-+.||++.+. ...+.+||+|.+ ++++. ..+.|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f~---~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQFE---GIELEKGMSVFG--QTEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGGT---TSCCCTTCEEEE--EETTT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHcC---CCCCccCCEEEE--ECCCC--CEEEEEEEEECC
Confidence 2344678888881 257999999985 44433 567899999975
No 12
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=46.29 E-value=13 Score=35.12 Aligned_cols=72 Identities=25% Similarity=0.269 Sum_probs=48.1
Q ss_pred ccccchHhHHHHHhcccccCceeeeeeeeccCcccceeeEEEEeccCCCCCCCCCCccceeeccccCCCCCCCCCcccCc
Q 001931 249 EFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWE 328 (995)
Q Consensus 249 EFVVp~~kY~eAm~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~~~~~r~~RVSPWE 328 (995)
|| -..+.|-.-+..+..+|||+||.=.-||-+. -=.|++. ++. +- -+ ..+|.|.... +.-.|+-=.
T Consensus 7 dF-~s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~G-----l~--~vQv~W~~~G---~TyWV~~~~ 72 (105)
T 2jng_A 7 EF-ASGNTYALYVRDTLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-NG-----VP--PVQVFWESTG---RTYWVHWHM 72 (105)
T ss_dssp GS-SSSHHHHHHHHHHCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-TT-----SS--EEEEEETTTT---EEEEEEGGG
T ss_pred hc-ccchhHHHHHHhcCCCccEEeeehhhhhhcc-CCceeEE-ecC-CC-----Cc--cceeeehhcC---ceEEEEeeh
Confidence 44 3567888888999999999999844444332 3368877 432 21 22 8899998775 234566667
Q ss_pred ccccCC
Q 001931 329 TEPVVT 334 (995)
Q Consensus 329 IEPv~~ 334 (995)
||.+..
T Consensus 73 ~Ellg~ 78 (105)
T 2jng_A 73 LEILGF 78 (105)
T ss_dssp EEECCC
T ss_pred hhhcCC
Confidence 777654
No 13
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=43.84 E-value=33 Score=34.19 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=62.8
Q ss_pred CCCCCCeEEEE-e--cCCCcEEEEEEeccCCCCCCCCcc-cCCCccccchHHHHHHHHhcCCcEEEEEcCCCCCCc----
Q 001931 178 RLFAGDSVLFI-R--DEKSQLLLGIRRANRQQPALSSSV-ISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSE---- 249 (995)
Q Consensus 178 kLvaGDsVVF~-R--~e~GeL~VGIRRA~r~~~~~~ssv-issdsm~~gvLAaAahaaat~~~FtV~Y~PRas~sE---- 249 (995)
..+.||.|.+. + .++|+++-.-+...+ |-.+ +....+ +--+.+|......|..++|..-|...-.+
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~-----P~~f~lG~g~v-ipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGK-----PALFRLGDASL-SEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHHTS-----CEEEETTSSSS-CHHHHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCCCC-----CEEEEECCCCc-cHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 57889999884 3 357776544221111 1111 111111 12345566666778888888766543333
Q ss_pred --cccchHhHHHHHhcccccCceeeeeeeeccCcccceeeEEEEecc
Q 001931 250 --FVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISD 294 (995)
Q Consensus 250 --FVVp~~kY~eAm~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 294 (995)
+.||++.+.. ...+.+||+|.+ ++++ ...+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~--~~~~~~G~~~~~--~~~~--G~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMD--AGEPEIGAIMLF--TAMD--GSEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTT--TCCCCTTCEEEE--ECTT--SCEEEEEEEEEET
T ss_pred HEEEeCHHHCCC--cCCCCCCcEEEE--ECCC--CCEEEEEEEEEcC
Confidence 5788888864 246889999876 4443 2467899999985
No 14
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=42.33 E-value=19 Score=31.83 Aligned_cols=34 Identities=9% Similarity=0.261 Sum_probs=29.8
Q ss_pred hhhhccCCCCCCCeEEEEecC-CCcEEEEEEeccC
Q 001931 171 SVFVSTKRLFAGDSVLFIRDE-KSQLLLGIRRANR 204 (995)
Q Consensus 171 S~FVreKkLvaGDsVVF~R~e-~GeL~VGIRRA~r 204 (995)
.+++++-+++.||.+...-++ +|++.+..+|-++
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk 65 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKE 65 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhh
Confidence 489999999999999998865 8889999999654
No 15
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=40.84 E-value=23 Score=30.94 Aligned_cols=55 Identities=11% Similarity=0.181 Sum_probs=40.1
Q ss_pred HhcccccCceeeeeeeeccCcccceeeEEEEeccCCCCCCCCCCccceeeccccCCCCCCCCCcccCcccccC
Q 001931 261 MYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVV 333 (995)
Q Consensus 261 m~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~~~~~r~~RVSPWEIEPv~ 333 (995)
|-..|.+|+++--++ + ..++|-|+|++|... ....|.+++.. .+.|..=+|.|+.
T Consensus 3 ~~~~~~vGd~vmArW-~---D~~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~~ 57 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-S---DCRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 57 (67)
T ss_dssp --CCCCTTCEEEEEC-T---TSCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cCcccccCCEEEEEc-C---CCCEeeEEEEEECCC----------CeEEEEEeCCc----eEEEeHHHcccCC
Confidence 456899999999998 2 258999999999752 45899999843 3566666666654
No 16
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=38.35 E-value=87 Score=30.69 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCcEEEEEcCCCCCC------ccccchHhHHHHHhcccccCceeeeeeeeccCcccceeeEEEEecc
Q 001931 224 LAAAAHAAANNSPFTIFYNPRASPS------EFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISD 294 (995)
Q Consensus 224 LAaAahaaat~~~FtV~Y~PRas~s------EFVVp~~kY~eAm~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 294 (995)
+.+|......|..++|+--|-..-. =+.||++.+.+. .....+||+|.+ +++ .|+|+.|.+
T Consensus 57 ~eeaL~gm~~Ge~~~v~Ipp~~aYG~~~~~~V~~v~~~~f~~~-~~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 57 LDEAILEMDVGEEREVVLPPEKAFGKRDPSKIKLIPLSEFTKR-GIKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp HHHHHHHCCTTCEEEEEECGGGTTCCCCGGGEEEEEHHHHHHT-TCCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred HHHHHcCCCCCCEEEEEECcHHhcCCCChHhEEEcCHHHCCcc-cCCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 5667777788999998865543222 267888888653 345778999975 332 589999975
No 17
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=31.48 E-value=33 Score=28.31 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=23.8
Q ss_pred cccccCceeeeeeeeccCcccceeeEEEEecc
Q 001931 263 TQVSLGMRFRMMFETEESGVRRYMGTITSISD 294 (995)
Q Consensus 263 ~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 294 (995)
+.|.+|+.+...|..+ ..||.++|++|..
T Consensus 2 ~~~~~G~~c~A~~s~D---g~wYrA~I~~i~~ 30 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSED---GCIYPATIASIDF 30 (59)
T ss_dssp CCCCTTCEEEEECTTT---SCEEEEEEEEEET
T ss_pred CcCCcCCEEEEEECCC---CCEEEEEEEEEcC
Confidence 4699999999999422 4899999999964
No 18
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=31.25 E-value=37 Score=33.16 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=31.6
Q ss_pred eEEEEEeCCCCeEEEEEEEe---------CCCCceee--cccchhhhccCCCCCCCeEEE
Q 001931 139 QEIVARDLHDTTWTFRHIYR---------GQPKRHLL--TTGWSVFVSTKRLFAGDSVLF 187 (995)
Q Consensus 139 QeLvakDlhGkeW~FRhiyR---------gqprRhlL--TtGWS~FVreKkLvaGDsVVF 187 (995)
.++++.|..|++=......+ +.+-+|+| ..||. .++++++||.|.|
T Consensus 84 LDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~~---~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 84 LDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGLA---ARLGIKPGDKVEW 140 (140)
T ss_dssp EEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTHH---HHHTCCTTCEEEC
T ss_pred eEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcChH---HHcCCCCCCEEeC
Confidence 35778888887666654211 12346887 57776 7889999999975
No 19
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=30.20 E-value=37 Score=31.03 Aligned_cols=54 Identities=9% Similarity=0.158 Sum_probs=39.9
Q ss_pred hcccccCceeeeeeeeccCcccceeeEEEEeccCCCCCCCCCCccceeeccccCCCCCCCCCcccCcccccC
Q 001931 262 YTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVV 333 (995)
Q Consensus 262 ~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~~~~~r~~RVSPWEIEPv~ 333 (995)
...|.+|+++--.+ + ..+||-++|++|... ..+.|.+++.. .+.|..=+|.|+.
T Consensus 19 ~~~f~vGd~VlArW-~---D~~yYPAkI~sV~~~----------~~YtV~F~DG~----~etvk~~~IKp~~ 72 (85)
T 3qii_A 19 SSEFQINEQVLACW-S---DCRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 72 (85)
T ss_dssp --CCCTTCEEEEEC-T---TSCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred CcccccCCEEEEEe-C---CCCEeeEEEEEECCC----------CeEEEEEeCCC----eEEecHHHcccCC
Confidence 46899999999999 3 258999999999752 35899999943 3566666666654
No 20
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=30.14 E-value=79 Score=28.85 Aligned_cols=46 Identities=17% Similarity=0.059 Sum_probs=34.1
Q ss_pred ceEEEEEeCCCCeEEEEEEEeCCCCceeecccchhhhccCCCCCCCeEEEEec----CCCcEEEEEEecc
Q 001931 138 AQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRD----EKSQLLLGIRRAN 203 (995)
Q Consensus 138 sQeLvakDlhGkeW~FRhiyRgqprRhlLTtGWS~FVreKkLvaGDsVVF~R~----e~GeL~VGIRRA~ 203 (995)
..++.+.|..| ..++++|+.. |.+||+|.+... =+|++.|.|-|..
T Consensus 39 v~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~ 88 (106)
T 2k75_A 39 VYQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSS 88 (106)
T ss_dssp EEEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTS
T ss_pred EEEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcE
Confidence 34789999999 5888888542 889999998743 2677777776644
No 21
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=28.87 E-value=25 Score=31.95 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=15.9
Q ss_pred hhccCCCCCCCeEEEEecC
Q 001931 173 FVSTKRLFAGDSVLFIRDE 191 (995)
Q Consensus 173 FVreKkLvaGDsVVF~R~e 191 (995)
.+..|+..+||+|+|.-..
T Consensus 18 Wa~~~~f~vGD~L~F~y~~ 36 (96)
T 2cbp_A 18 WPKGKRFRAGDILLFNYNP 36 (96)
T ss_dssp TTTTCCBCTTCEEEEECCT
T ss_pred hccCceEcCCCEEEEEecC
Confidence 4688999999999997654
No 22
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.52 E-value=35 Score=34.06 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=21.3
Q ss_pred CCCCCCCeEEEEecCCCcEEEEEE
Q 001931 177 KRLFAGDSVLFIRDEKSQLLLGIR 200 (995)
Q Consensus 177 KkLvaGDsVVF~R~e~GeL~VGIR 200 (995)
..|.+||.|-|+++.+|+|.+.|-
T Consensus 116 ~~l~~Gd~ig~~~~~~G~l~~~iN 139 (170)
T 2e63_A 116 DQLGEGDRVGVERTVAGELRLWVN 139 (170)
T ss_dssp GGCCSSCCEEEEECTTSCEEEEES
T ss_pred cccCCCCEEEEEEcCCcEEEEEEC
Confidence 457899999999999999999873
No 23
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=28.40 E-value=39 Score=28.41 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=36.3
Q ss_pred hcccccCceeeeeeeeccCcccceeeEEEEeccCCCCCCCCCCccceeeccccCCCCCCCCCcccCccccc
Q 001931 262 YTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPV 332 (995)
Q Consensus 262 ~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~~~~~r~~RVSPWEIEPv 332 (995)
...|.+|+.+.-.|..+ ..||.++|.+|.... ....|...+-. +.+.|+.=+|.|+
T Consensus 6 ~~~~~vGd~c~A~~s~D---g~wYrA~I~~v~~~~---------~~~~V~fvdYG---n~e~V~~~~Lrpl 61 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSED---GQCYEAEIEEIDEEN---------GTAAITFAGYG---NAEVTPLLNLKPV 61 (64)
T ss_dssp SSCCCTTCEEEEECTTT---SSEEEEEEEEEETTT---------TEEEEEETTTT---EEEEEEGGGEECC
T ss_pred CCCCCCCCEEEEEECCC---CCEEEEEEEEEcCCC---------CEEEEEEEecC---CEEEEeHHHcEeC
Confidence 35799999999999432 489999999997421 23567666553 2344444444443
No 24
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=27.50 E-value=40 Score=27.21 Aligned_cols=28 Identities=7% Similarity=0.130 Sum_probs=21.9
Q ss_pred ccccCceeeeeeeeccCcccceeeEEEEecc
Q 001931 264 QVSLGMRFRMMFETEESGVRRYMGTITSISD 294 (995)
Q Consensus 264 ~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 294 (995)
.|.+|+...-.|..+ ..||.++|++|..
T Consensus 1 ~wk~G~~c~A~~s~D---g~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWED---NKFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTT---TEEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCC---CCEEEEEEEEEeC
Confidence 489999999999432 4799999999963
No 25
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=24.86 E-value=58 Score=41.26 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=40.4
Q ss_pred cccccCceeeeeeeeccCcccceeeEEEEeccCCCCCCCCCCccceeeccccCCCCCC--CCCcccCcccccCC
Q 001931 263 TQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGER--PSRVSLWETEPVVT 334 (995)
Q Consensus 263 ~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~~~~~r--~~RVSPWEIEPv~~ 334 (995)
-.+.+|+||.|.=+.-..+ --..|||+||.... .=.+|+|=||++=.+.. -.|-|+-----|..
T Consensus 1064 Q~F~LGDRVv~VqdsG~VP-l~~kGTVVGi~~~~-------~~~~ldVvFD~~F~~G~tlggrcs~~RG~~v~~ 1129 (1155)
T 3pie_A 1064 QRFHLGDRVMYIQDSGKVP-LHSKGTVVGYTSIG-------KNVSIQVLFDNEIIAGNNFGGRLQTRRGLGLDS 1129 (1155)
T ss_pred CcccCCCeEEEecCCCCCc-cccceEEEEEecCC-------CceEEEEEeccCccCCCcccccccccccccccH
Confidence 5699999999875532222 23479999998532 24689999999854322 24555555444433
No 26
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=24.59 E-value=89 Score=30.11 Aligned_cols=61 Identities=20% Similarity=0.130 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCcEEEEEcC------CCCCCccccchHhHHHHHhcccccCceeeeeeeeccCcccceeeEEEEecc
Q 001931 224 LAAAAHAAANNSPFTIFYNP------RASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISD 294 (995)
Q Consensus 224 LAaAahaaat~~~FtV~Y~P------Ras~sEFVVp~~kY~eAm~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 294 (995)
+.+|......|..++|.--| +..-.-|.|++..+.. ....+.+||+|.+ ++ ..|+|+.|.+
T Consensus 58 ~eeaL~gm~~Ge~~~v~ipp~~aYG~~~~~~v~~v~~~~f~~-~~~~~~~G~~~~~--~~-------~~~~V~~v~~ 124 (151)
T 1ix5_A 58 FEEAVLDMEVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKE-ADFEPEEGMVILA--EG-------IPATITEVTD 124 (151)
T ss_dssp HHHHHHTCCTTCCCEEEECTTTSSCSCCSTTBCCEETHHHHT-STTCCCTTEEEES--SS-------CEEEEEEEET
T ss_pred HHHHHcCCCCCCEEEEEECcHHHCCCCCccEEEEEEHHHcCc-cCCcccccCEEEE--CC-------eEEEEEEEcC
Confidence 45566666677778777554 3334568899999853 1246899999764 32 6899999975
No 27
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.86 E-value=55 Score=28.84 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=30.7
Q ss_pred cccccCceeeeeeeeccCcccceeeEEEEeccCCCCCCCCCCccceeeccccC
Q 001931 263 TQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDES 315 (995)
Q Consensus 263 ~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~ 315 (995)
..|.+|+++.-.|. + ..||.+||++|.+ + ....|..++-
T Consensus 8 ~~~kvGd~clA~ws-D---g~~Y~A~I~~v~~-------~---~~~~V~f~Dy 46 (74)
T 2equ_A 8 FDFKAGEEVLARWT-D---CRYYPAKIEAINK-------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCTTCEEEEECS-S---SSEEEEEEEEEST-------T---SSEEEEETTS
T ss_pred CCCCCCCEEEEECC-C---CCEEEEEEEEECC-------C---CEEEEEEecC
Confidence 57999999999996 2 4899999999963 1 2467888765
No 28
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=23.60 E-value=30 Score=32.86 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=35.4
Q ss_pred hHHHHHhcccccCceeeeeeeeccCcccceeeEEEEeccCCCCCCCCCCccceeeccccCCCCCCC
Q 001931 256 KYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERP 321 (995)
Q Consensus 256 kY~eAm~~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~~~~~r~ 321 (995)
.+.++....+.+|+|++....+. ....|||.=|...+. + .-.| +=|.||++. +.+.
T Consensus 24 ~~~~~~~~~~~VG~RV~V~~~g~----~~~~GtVryvG~v~~--~-~G~w--vGVElDep~-GKnD 79 (113)
T 1whg_A 24 SEEKAQASAISVGSRCEVRAPDH----SLRRGTVMYVGLTDF--K-PGYW--VGVRYDEPL-GKND 79 (113)
T ss_dssp HHHHHHHTTSCSSCEEEECCSSS----SCEEEEEEEEEECSS--S-SSEE--EEEEESSSC-CSBB
T ss_pred hHhhhhhhcCCCCCEEEEecCCC----cceEEEEEEecccCC--C-CCEE--EEEEecCCC-CccC
Confidence 34555567899999998753221 134677776665432 2 3467 789999996 4443
No 29
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=23.09 E-value=1.8e+02 Score=25.90 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=42.1
Q ss_pred CceeEEEeccccCCCCCCceeechhhhhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeecccchhhhcc
Q 001931 97 PTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVST 176 (995)
Q Consensus 97 ~~~sF~KtLTaSDVs~~GrfsVPKr~AE~~FPpLD~s~~~PsQeLvakDlhGkeW~FRhiyRgqprRhlLTtGWS~FVre 176 (995)
.+.+..|+++..++.. |-.-|++ .....++.+.|..| ..+.+.| ...+..
T Consensus 13 ~v~i~~~V~~~~~~r~--------------~~~~~G~-~~~v~~~~l~DeTG---~I~~tlW------------~~~~~~ 62 (97)
T 3e0e_A 13 SGTINAEVVTAYPKKE--------------FSRKDGT-KGQLKSLFLKDDTG---SIRGTLW------------NELADF 62 (97)
T ss_dssp EEEEEEEEEEECCCEE--------------EC----C-CEEEEEEEEEETTE---EEEEEEE------------GGGGGC
T ss_pred cEEEEEEEEECCCceE--------------EEcCCCC-eeEEEEEEEECCCC---cEEEEEE------------CCcccc
Confidence 4567788888877643 1111221 11244688899988 5666655 444444
Q ss_pred CCCCCCCeEEEEec----CCCcEEEEEEe
Q 001931 177 KRLFAGDSVLFIRD----EKSQLLLGIRR 201 (995)
Q Consensus 177 KkLvaGDsVVF~R~----e~GeL~VGIRR 201 (995)
.|.+||+|.| ++ ..|.+.+.+-|
T Consensus 63 -~i~~Gdvv~i-~g~v~~~~~~~el~~g~ 89 (97)
T 3e0e_A 63 -EVKKGDIAEV-SGYVKQGYSGLEISVDN 89 (97)
T ss_dssp -CCCTTCEEEE-EEEEEEC--CEEEEEEE
T ss_pred -ccCCCCEEEE-EEEEEEcCCeEEEEECC
Confidence 8999999999 53 24444444433
No 30
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=23.08 E-value=53 Score=29.76 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=24.3
Q ss_pred cccccCceeeeeeeeccCcccceeeEEEEecc
Q 001931 263 TQVSLGMRFRMMFETEESGVRRYMGTITSISD 294 (995)
Q Consensus 263 ~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd 294 (995)
..|.+|+.+.-.|..+ ..||.++|++|..
T Consensus 9 ~~~kvGd~C~A~ys~D---g~wYrA~I~~i~~ 37 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSED---GCIYPATIASIDF 37 (88)
T ss_dssp CCCCSSCEEEEECTTT---CCEEEEEEEEEET
T ss_pred CCCCCCCEEEEEECCC---CCEEEEEEEEecC
Confidence 5899999999999422 4899999999964
No 31
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=22.39 E-value=30 Score=32.54 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=16.4
Q ss_pred hhhccCCCCCCCeEEEEecC
Q 001931 172 VFVSTKRLFAGDSVLFIRDE 191 (995)
Q Consensus 172 ~FVreKkLvaGDsVVF~R~e 191 (995)
..+..|+..+||+|+|.-..
T Consensus 23 ~Wa~~~~f~vGD~L~F~y~~ 42 (116)
T 1x9u_A 23 TWATGKTFRVGDELEFDFAA 42 (116)
T ss_dssp HHHTTCCEETTCEEEECCCT
T ss_pred hccccccCcCCCEEEEEecC
Confidence 34789999999999996653
No 32
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=22.27 E-value=1.6e+02 Score=26.92 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=33.6
Q ss_pred cccccCceeeeeeeeccCcccceeeEEEEeccCCCCCCCCCCccceeeccccCC--CCCCC
Q 001931 263 TQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDEST--AGERP 321 (995)
Q Consensus 263 ~~Ws~GMRFRM~FEtEdss~rwy~GTItgIsd~DP~rWp~S~WR~LqV~WDE~~--~~~r~ 321 (995)
..+.+|+|++...... .....|||.-|...++.....-.| +=|+|||+. .+.+.
T Consensus 6 ~~~~VG~rV~V~~~~~---~~~~~GtVryvG~v~~~~~~~G~w--vGVElDep~~~~GKnD 61 (95)
T 1whl_A 6 SGIDVGCPVKVQLRSG---EEKFPGVVRFRGPLLAERTVSGIF--FGVELLEEGRGQGFTD 61 (95)
T ss_dssp CCCCSSCEEEEECSSS---SCEEEEEEEEECCCCSSSSCCCCC--EEEEECSSSCSCCSST
T ss_pred ccCcCCCEEEEecCCC---ccceeEEEEEeCccCcccCCCceE--EEEEeCCCcccCCCCC
Confidence 4578999998754320 013578888777655322334456 679999995 44443
No 33
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=21.69 E-value=62 Score=32.21 Aligned_cols=21 Identities=10% Similarity=0.290 Sum_probs=19.0
Q ss_pred CCCCeEEEEecCCCcEEEEEE
Q 001931 180 FAGDSVLFIRDEKSQLLLGIR 200 (995)
Q Consensus 180 vaGDsVVF~R~e~GeL~VGIR 200 (995)
..||.+.|+++.+|++.+.|-
T Consensus 107 ~~g~~l~f~v~~~G~l~~~iN 127 (168)
T 2yue_A 107 EKDNILYYYVNGAGDVIYGIN 127 (168)
T ss_dssp CSSCEEEEEECTTSEEEEEES
T ss_pred cCCCEEEEEEcCCCEEEEEEC
Confidence 679999999999999999883
No 34
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=21.61 E-value=88 Score=28.41 Aligned_cols=68 Identities=6% Similarity=-0.002 Sum_probs=35.8
Q ss_pred CCCCceeechhhhhhcCCCCCCCCCCCceEEEE---EeCCCCeEEEEEEEeCCCCceeecccch----hhhccCCCCCCC
Q 001931 111 STHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVA---RDLHDTTWTFRHIYRGQPKRHLLTTGWS----VFVSTKRLFAGD 183 (995)
Q Consensus 111 s~~GrfsVPKr~AE~~FPpLD~s~~~PsQeLva---kDlhGkeW~FRhiyRgqprRhlLTtGWS----~FVreKkLvaGD 183 (995)
...|+++||+...+. |+... +-.+.+ +...|. . +..+- ...+-.+|-. .+-+.-+|++||
T Consensus 12 ~~~gqvtiP~~iR~~----LgI~~---GD~V~v~~i~~~~g~--~-~~~~~---~~~v~~kGqitIPkeiR~~lgi~~Gd 78 (92)
T 2glw_A 12 HRIGRIIIPAGTRKF----YGIEQ---GDFVEIKIVKYEGEE--P-KEGTF---TARVGEQGSVIIPKALRDVIGIKPGE 78 (92)
T ss_dssp BGGGEEECCHHHHHH----HTCCT---TCEEEEEEEEEETTE--E-EEEEE---EEECCGGGEEECCHHHHHHHTCCTTC
T ss_pred eCCCEEEecHHHHHH----cCCCC---CCEEEEEEEEecCCc--c-ceeEE---EEEECcCceEECcHHHHHHcCCCCCC
Confidence 346899999988876 44322 223333 223333 1 11110 0111122321 344556899999
Q ss_pred eEEEEecC
Q 001931 184 SVLFIRDE 191 (995)
Q Consensus 184 sVVF~R~e 191 (995)
.|.|+..+
T Consensus 79 ~l~~~~~~ 86 (92)
T 2glw_A 79 VIEVLLLG 86 (92)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEeC
Confidence 99998864
No 35
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=20.72 E-value=59 Score=29.26 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=17.3
Q ss_pred cCCCCCCCeEEEEec-CCCcEE-EEEEe
Q 001931 176 TKRLFAGDSVLFIRD-EKSQLL-LGIRR 201 (995)
Q Consensus 176 eKkLvaGDsVVF~R~-e~GeL~-VGIRR 201 (995)
-++|++||.|.|.-. .+|.|. ..|++
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~it~i~~ 86 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSLLQDIKV 86 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEEe
Confidence 467999999999664 345554 44443
No 36
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=20.44 E-value=1.4e+02 Score=28.83 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=37.7
Q ss_pred CcEEEEEcCCCCCCccccchHhHHH----HHhcccccCceeeeeeeecc-CcccceeeEEEEec
Q 001931 235 SPFTIFYNPRASPSEFVIPLAKYNK----AMYTQVSLGMRFRMMFETEE-SGVRRYMGTITSIS 293 (995)
Q Consensus 235 ~~FtV~Y~PRas~sEFVVp~~kY~e----Am~~~Ws~GMRFRM~FEtEd-ss~rwy~GTItgIs 293 (995)
..++|.|..-. -.|-.|+.+.+.- +....+++|+.+...-+.+| .+-.||.|+|+.+.
T Consensus 28 d~~~V~f~n~w-~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k 90 (128)
T 3h8z_A 28 DSVTIFFENNW-QSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMK 90 (128)
T ss_dssp SEEEEEETTCT-TCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CCCEEEEEEEEEEE
T ss_pred CcEEEEEcccc-CcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCcCccEEEEEEEee
Confidence 44788886431 1366666666553 22367899999999887655 34579999999996
Done!