Query 001932
Match_columns 995
No_of_seqs 352 out of 2254
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 12:41:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02900 alanyl-tRNA synthetas 100.0 6E-245 1E-249 2218.9 91.1 922 48-991 1-935 (936)
2 KOG0188 Alanyl-tRNA synthetase 100.0 4E-245 8E-250 2063.0 71.5 881 58-994 2-895 (895)
3 COG0013 AlaS Alanyl-tRNA synth 100.0 3E-240 6E-245 2117.2 83.1 858 56-994 4-879 (879)
4 TIGR00344 alaS alanine--tRNA l 100.0 1E-228 3E-233 2071.8 82.7 837 62-973 1-851 (851)
5 PRK00252 alaS alanyl-tRNA synt 100.0 3E-226 7E-231 2059.0 83.7 851 57-994 1-865 (865)
6 TIGR03683 A-tRNA_syn_arch alan 100.0 6E-203 1E-207 1848.1 79.0 791 53-990 51-901 (902)
7 PRK13902 alaS alanyl-tRNA synt 100.0 6E-202 1E-206 1838.9 79.0 793 53-993 54-899 (900)
8 PRK01584 alanyl-tRNA synthetas 100.0 2E-191 5E-196 1663.9 53.8 583 58-790 1-592 (594)
9 PF01411 tRNA-synt_2c: tRNA sy 100.0 2E-171 4E-176 1510.7 14.8 540 62-632 1-547 (552)
10 cd00673 AlaRS_core Alanyl-tRNA 100.0 2E-108 5E-113 855.0 18.8 230 60-306 1-232 (232)
11 COG2872 Predicted metal-depend 100.0 2.6E-40 5.6E-45 351.2 20.8 220 540-795 10-239 (241)
12 PLN02961 alanine-tRNA ligase 100.0 2.3E-39 5E-44 345.4 21.8 202 567-789 2-222 (223)
13 KOG2105 Predicted metal-depend 100.0 1.8E-37 3.9E-42 325.2 28.5 359 566-992 42-410 (415)
14 PRK12444 threonyl-tRNA synthet 99.9 2.2E-25 4.7E-30 271.7 20.7 235 573-853 36-286 (639)
15 PRK00413 thrS threonyl-tRNA sy 99.9 2.6E-24 5.6E-29 262.7 21.7 233 575-853 34-282 (638)
16 PRK12305 thrS threonyl-tRNA sy 99.9 9.7E-24 2.1E-28 254.7 19.4 199 633-853 6-218 (575)
17 PLN02837 threonine-tRNA ligase 99.9 3E-23 6.6E-28 250.9 19.1 199 633-853 43-259 (614)
18 PLN02908 threonyl-tRNA synthet 99.9 2.7E-22 5.8E-27 245.7 19.8 235 572-853 82-333 (686)
19 TIGR00418 thrS threonyl-tRNA s 99.8 4.5E-20 9.8E-25 222.5 17.2 196 637-853 1-212 (563)
20 COG0441 ThrS Threonyl-tRNA syn 99.7 1.6E-17 3.5E-22 196.9 15.0 189 633-853 26-232 (589)
21 PF07973 tRNA_SAD: Threonyl an 99.3 1.8E-12 4E-17 103.6 5.7 44 728-787 1-44 (44)
22 smart00863 tRNA_SAD Threonyl a 99.0 3.4E-10 7.4E-15 90.4 4.4 44 728-787 1-44 (44)
23 PRK14799 thrS threonyl-tRNA sy 98.8 6.3E-09 1.4E-13 124.7 8.2 99 751-853 74-180 (545)
24 KOG1637 Threonyl-tRNA syntheta 98.8 9E-10 2E-14 124.3 0.7 173 572-853 30-204 (560)
25 PF02272 DHHA1: DHHA1 domain; 97.7 3.8E-05 8.2E-10 66.8 4.9 65 915-988 3-68 (68)
26 cd00768 class_II_aaRS-like_cor 96.0 0.025 5.4E-07 59.1 8.8 181 61-299 3-211 (211)
27 PRK09348 glyQ glycyl-tRNA synt 95.2 0.16 3.4E-06 55.1 11.1 172 56-312 2-180 (283)
28 TIGR00388 glyQ glycyl-tRNA syn 93.8 0.54 1.2E-05 51.3 11.1 173 58-312 1-177 (293)
29 PRK00488 pheS phenylalanyl-tRN 92.3 0.89 1.9E-05 52.1 10.7 39 48-86 97-136 (339)
30 PRK14908 glycyl-tRNA synthetas 91.7 0.93 2E-05 58.4 11.1 173 57-312 4-181 (1000)
31 cd00733 GlyRS_alpha_core Class 91.6 1.5 3.2E-05 47.7 10.8 173 60-312 2-176 (279)
32 TIGR00644 recJ single-stranded 88.6 6 0.00013 48.5 14.2 97 886-992 325-421 (539)
33 COG0752 GlyQ Glycyl-tRNA synth 88.5 2.9 6.3E-05 45.3 9.8 169 56-312 3-181 (298)
34 TIGR00458 aspS_arch aspartyl-t 83.9 6 0.00013 47.1 10.5 99 62-176 138-247 (428)
35 cd00669 Asp_Lys_Asn_RS_core As 83.6 4 8.6E-05 45.6 8.4 101 61-175 5-115 (269)
36 PRK03932 asnC asparaginyl-tRNA 83.1 11 0.00025 45.0 12.5 104 61-174 137-253 (450)
37 TIGR00462 genX lysyl-tRNA synt 82.3 8.9 0.00019 43.5 10.7 114 61-190 5-135 (304)
38 cd00670 Gly_His_Pro_Ser_Thr_tR 81.4 7.8 0.00017 41.5 9.4 106 61-182 6-149 (235)
39 PF01411 tRNA-synt_2c: tRNA sy 80.8 0.33 7.1E-06 59.4 -1.6 112 180-319 77-199 (552)
40 PF02091 tRNA-synt_2e: Glycyl- 80.6 0.85 1.8E-05 49.8 1.6 172 61-312 2-175 (284)
41 PTZ00450 macrophage migration 76.6 2.7 5.9E-05 40.8 3.6 25 168-192 78-102 (113)
42 TIGR00499 lysS_bact lysyl-tRNA 75.0 2.8 6.1E-05 50.8 4.0 101 61-176 176-294 (496)
43 KOG1759 Macrophage migration i 69.9 4.7 0.0001 39.1 3.3 23 170-192 79-101 (115)
44 PF01422 zf-NF-X1: NF-X1 type 62.0 3.4 7.3E-05 27.9 0.5 9 233-241 12-20 (20)
45 PTZ00397 macrophage migration 61.7 8.1 0.00018 37.3 3.4 29 164-192 74-102 (116)
46 KOG1501 Arginine N-methyltrans 60.2 6.9 0.00015 45.9 3.0 80 289-370 72-158 (636)
47 TIGR00470 sepS O-phosphoseryl- 59.0 13 0.00028 44.5 5.0 19 289-307 317-335 (533)
48 PF01187 MIF: Macrophage migra 54.3 9.8 0.00021 36.7 2.5 24 169-192 77-100 (114)
49 PTZ00326 phenylalanyl-tRNA syn 52.9 30 0.00065 41.9 6.8 124 120-308 358-483 (494)
50 COG0016 PheS Phenylalanyl-tRNA 52.1 15 0.00032 42.3 3.8 175 59-308 112-321 (335)
51 PRK11070 ssDNA exonuclease Rec 46.3 5.1E+02 0.011 32.4 16.1 95 887-992 355-453 (575)
52 smart00438 ZnF_NFX Repressor o 41.1 12 0.00025 27.1 0.6 11 233-243 12-22 (26)
53 PLN02853 Probable phenylalanyl 40.3 24 0.00052 42.6 3.4 40 45-84 208-247 (492)
54 PTZ00401 aspartyl-tRNA synthet 40.0 37 0.0008 41.8 5.0 98 62-175 218-327 (550)
55 PF01409 tRNA-synt_2d: tRNA sy 37.9 16 0.00035 40.3 1.4 26 60-85 19-44 (247)
56 cd00776 AsxRS_core Asx tRNA sy 33.1 55 0.0012 37.5 4.7 100 60-175 27-137 (322)
57 PRK14066 exodeoxyribonuclease 32.6 51 0.0011 29.8 3.4 31 438-468 6-36 (75)
58 KOG2783 Phenylalanyl-tRNA synt 32.5 21 0.00046 41.4 1.2 36 286-324 293-328 (436)
59 PRK14063 exodeoxyribonuclease 32.1 53 0.0011 29.8 3.4 32 437-468 6-37 (76)
60 PRK14064 exodeoxyribonuclease 31.3 56 0.0012 29.6 3.4 32 437-468 7-38 (75)
61 PRK14067 exodeoxyribonuclease 31.1 55 0.0012 30.0 3.4 32 437-468 8-39 (80)
62 COG2024 Phenylalanyl-tRNA synt 30.6 71 0.0015 37.2 4.9 58 237-307 279-343 (536)
63 cd00777 AspRS_core Asp tRNA sy 29.9 27 0.00059 39.2 1.5 104 61-176 5-116 (280)
64 TIGR01280 xseB exodeoxyribonuc 28.9 66 0.0014 28.4 3.4 31 438-468 3-33 (67)
65 PRK00977 exodeoxyribonuclease 28.3 65 0.0014 29.5 3.4 32 437-468 11-42 (80)
66 PLN02850 aspartate-tRNA ligase 28.0 72 0.0016 39.2 4.8 86 62-162 230-328 (530)
67 PF02609 Exonuc_VII_S: Exonucl 27.3 76 0.0016 26.5 3.4 29 440-468 3-31 (53)
68 PRK14068 exodeoxyribonuclease 26.0 78 0.0017 28.8 3.4 32 437-468 7-38 (76)
69 PF10440 WIYLD: Ubiquitin-bind 25.6 2.8E+02 0.0061 24.6 6.6 46 366-417 2-47 (65)
70 cd00776 AsxRS_core Asx tRNA sy 25.5 36 0.00079 39.0 1.6 28 288-315 290-317 (322)
71 KOG1159 NADP-dependent flavopr 25.4 34 0.00073 41.1 1.2 87 43-161 226-313 (574)
72 cd00773 HisRS-like_core Class 25.3 1.2E+02 0.0027 33.3 5.7 116 60-183 5-139 (261)
73 PRK14069 exodeoxyribonuclease 24.9 80 0.0017 29.9 3.4 32 437-468 9-40 (95)
74 PF01361 Tautomerase: Tautomer 23.3 65 0.0014 27.1 2.3 29 164-192 16-44 (60)
75 PF00152 tRNA-synt_2: tRNA syn 23.2 44 0.00096 38.2 1.7 96 61-164 26-131 (335)
76 PF11867 DUF3387: Domain of un 22.6 5E+02 0.011 29.9 10.1 198 284-498 33-256 (335)
77 PLN02850 aspartate-tRNA ligase 21.6 45 0.00097 41.0 1.4 29 288-316 494-522 (530)
78 TIGR00457 asnS asparaginyl-tRN 21.4 47 0.001 40.0 1.5 29 288-316 417-445 (453)
79 PRK12295 hisZ ATP phosphoribos 21.3 1.9E+02 0.0041 33.9 6.4 116 57-182 4-136 (373)
80 PRK01964 4-oxalocrotonate taut 21.0 1E+02 0.0022 26.3 3.1 30 163-192 16-45 (64)
81 cd00775 LysRS_core Lys_tRNA sy 20.5 50 0.0011 38.0 1.4 23 293-315 302-324 (329)
82 cd00491 4Oxalocrotonate_Tautom 20.5 1.3E+02 0.0028 24.8 3.6 29 164-192 16-44 (58)
83 TIGR00443 hisZ_biosyn_reg ATP 20.4 2.5E+02 0.0055 31.9 7.0 117 60-190 11-149 (314)
84 PF02824 TGS: TGS domain; Int 20.2 1.1E+02 0.0024 26.1 3.1 31 572-602 30-60 (60)
85 PTZ00425 asparagine-tRNA ligas 20.2 51 0.0011 40.9 1.4 29 288-316 550-578 (586)
86 PRK06462 asparagine synthetase 20.1 53 0.0011 37.9 1.5 29 288-316 299-327 (335)
No 1
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=6.2e-245 Score=2218.91 Aligned_cols=922 Identities=68% Similarity=1.065 Sum_probs=844.1
Q ss_pred ccCCCCcCCCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCccccccccccccc
Q 001932 48 MPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQK 127 (995)
Q Consensus 48 ~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~~~~~~~~r~~~~Qk 127 (995)
||-.++..++||++|||++||+||++|||+++|||||||+|||||||||||||||||||+|.++|++++++|+|+|||||
T Consensus 1 ~~~~~~~~~~~~~~eiR~~Fl~FF~~~gH~~v~s~slvp~~dptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~Qk 80 (936)
T PLN02900 1 MPEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQK 80 (936)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHhCCCEEeCCCCcCCCCCCCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeecc
Confidence 78888888999999999999999999999999999999999999999999999999999999999777788999999999
Q ss_pred ccccCCCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHH
Q 001932 128 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARD 207 (995)
Q Consensus 128 CiR~gGkhnDl~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~ 207 (995)
|||+|||||||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||++|+.+ |+|+||++
T Consensus 81 CiR~gGKHnDlenVG~t~rHhTfFEMlGnfSfgdYfK~eaI~~awe~lT~~l~i~~~~l~vTv~~~D~~~--~~d~Ea~~ 158 (936)
T PLN02900 81 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEKQ--APDDEARA 158 (936)
T ss_pred cccCCCCCCCHhhccCCCCchHHHHhhhccchhhhhHHHHHHHHHHHHHHhcCCCHHHEEEEEeCCCCCc--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874 99999999
Q ss_pred HHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccccCCCCccccCCC
Q 001932 208 IWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287 (995)
Q Consensus 208 iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~Lp~ 287 (995)
||+++||++||+++|.+||||+||+||||||||||||||++++++.++++.||+|||||||||||||||+.||+|+|||+
T Consensus 159 iW~~~~~~~rI~~~~~~dNfW~~G~tGpcGPcsEi~yD~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~ 238 (936)
T PLN02900 159 IWLDYLPEERVLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPA 238 (936)
T ss_pred HHHHhCCHHHeecCCcccCCccCCCCcCCCCCeEEEEecCCccCccccCCCCCCCEEEEeeeeeeeeeecCCCceeeCCC
Confidence 99999999999999999999999999999999999999998877766688899999999999999999999999999999
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhheeeecCCCcc
Q 001932 288 KHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCP 367 (995)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtDlf~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~f~i~DG~~P 367 (995)
||||||||||||+|||||++||||||+|.|||++|++++|+++|+|....++.+..+.||||||||+||++|||+||++|
T Consensus 239 ~~IDTGmGLERl~~vlqg~~snydtDlf~pii~~i~~~~~~~~~~~~~y~~~~~~~~~a~rviaDH~R~~~f~i~DGv~P 318 (936)
T PLN02900 239 KHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRTLSFAIADGVVP 318 (936)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCccccccccccccccceeeeeehhhHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999998889886543332456789999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001932 368 GNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKK 447 (995)
Q Consensus 368 sn~grgYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~ 447 (995)
||+|||||||||||||+|+|+++||++.|||++||+.|++.|++.||||.++++.|++||..||++|.+||++|+++|++
T Consensus 319 sN~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~ 398 (936)
T PLN02900 319 SNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKK 398 (936)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999644899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc---CCCCChHHHHHhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHH
Q 001932 448 AAQDVQ---GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524 (995)
Q Consensus 448 ~~~~~~---~~~l~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 524 (995)
.+++++ ++.|||++||+||||||||+|||++||+|+|+.||+++|+++|++||++||++++.........+...+..
T Consensus 399 ~i~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~F~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 478 (936)
T PLN02900 399 ALAAAKANGGPVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSW 478 (936)
T ss_pred HHHHHhhcCCCcCCHHHHHHHHhccCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHHhhhhccccccccccHHHHHH
Confidence 998765 36899999999999999999999999999999999999999999999999876532221111222222334
Q ss_pred HhhcCCCCcccccccccceeeeEEEEEEEeCCeeeeeecCCCeEEEEecceEEEEeeCCeeeccceeecccc-eEEEEeE
Q 001932 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG-SFYVRNV 603 (995)
Q Consensus 525 l~~~~~~~t~~~~~y~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~-~~~V~dv 603 (995)
+....++++++|.||++..+++|+|++++.+++.|+++.+++.++|+||+|+|||||||||+|+|+|..+++ .++|++|
T Consensus 479 ~~~~~~~~~t~f~gY~~~~~~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~~V~dv 558 (936)
T PLN02900 479 LQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGGAVVEVSDV 558 (936)
T ss_pred HHhccCCCCCcccccccCCccceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEecCCCCEEEEEEE
Confidence 433223444469999954338999999998888899998888899999999999999999999999987666 7999999
Q ss_pred EEeCCEEEEEEeeccCCCcCCCCCeEehh-------hHhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCC
Q 001932 604 QIYGGFVIHIGSLTEGAGRFSVGEEVICK-------LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGK 676 (995)
Q Consensus 604 ~~~~g~ivH~~~~~~~~~~l~~G~~V~~~-------~~m~~HTAtHLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~ 676 (995)
++.+|.++|.+.+.. +.+.+|++|.+. +||++|||+|||++|++++||.++.|.||+++++++||||++++
T Consensus 559 ~k~~g~i~H~~~~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~ 636 (936)
T PLN02900 559 QKAGGFVLHIGTVTE--GSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGK 636 (936)
T ss_pred EEECCEEEEEEEecc--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCC
Confidence 999999999987654 678999999998 99999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhcccCchhhcCccCCCCEEEEEeCCcccccccCCCCccccce-eee
Q 001932 677 PVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSI-SAE 755 (995)
Q Consensus 677 ~lt~eeL~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~~~~f~e~y~d~VRvV~I~~~~~~ll~~~~~~~~~~~-d~e 755 (995)
++|++++.+||++||++|++|+||++.+++++||+++.|++++|+++|++.||||+|+ ++ |.+
T Consensus 637 ~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~~~VRVV~Ig----------------~~~d~e 700 (936)
T PLN02900 637 PMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVG----------------GVYSME 700 (936)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccChHhhcCCCCCCcEEEEEEC----------------Ccccee
Confidence 9999999999999999999999999999999999997799999999999999999998 66 999
Q ss_pred eccCCCcccccccccEEEEeeeeccCCeeEEEEEechHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhhhcCCCcc
Q 001932 756 LCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAI 835 (995)
Q Consensus 756 ~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~l~~~~~~~~~~~~ 835 (995)
+||||||+|||+||.|+|++++++++|++||+|+||.+|++++++..+++++++.+++++...+.+.+..|.+.+...++
T Consensus 701 lCGGTHV~nTgeIG~fkIls~~~~~~G~rRIe~v~G~~A~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 780 (936)
T PLN02900 701 LCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKVEGSDLEKKVASLKSRVDAAVI 780 (936)
T ss_pred CCCCCcCCccccCceEEEEEEeeecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999998778888899999999988889
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccEEEEEeccCCCHHHHHHHHHHHHhcc-CC
Q 001932 836 PAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQK-GM 914 (995)
Q Consensus 836 ~~~~~~~l~~~l~~l~~e~k~l~kel~~l~~~~a~~~a~~l~~~~~~~~~~~iv~~~~~~~d~~~L~~~a~~l~~~~-~~ 914 (995)
|+.++.++.++++++++++++++|++++++.+++...++.+.+++...+..+++..++.+.+++.|+++++.++++. ..
T Consensus 781 ~~~~~~el~~~v~~l~~e~k~l~k~~~~l~~~la~~~~~~l~~~~~~~~~~~~v~~~~~~~d~~~Lr~la~~l~~~~~~~ 860 (936)
T PLN02900 781 PAAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATELASKALSAGKSVLVARLDVGVDAAALKEAAEKVIAKLGDP 860 (936)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEEecCCCCHHHHHHHHHHHHhhcCCc
Confidence 99999999999999999999999999999999999888888765543333677777754578999999999998854 43
Q ss_pred cEEEEEeeCCCCeEEEEEecCCCcccccCCCHHHHHHHHhhccCCCCCCCCCCCcccccCCcCCHHHHHHHHHHHHH
Q 001932 915 PVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAA 991 (995)
Q Consensus 915 ~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~A~~l~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~~~~ 991 (995)
.+++++....++++.+++++++++ ..++++|++|++++++.+||||| |+|+||||+|++++++++|++.++++++
T Consensus 861 ~vvl~~~~~~~~k~~~~~~~~~~~-~~~~~~A~~lvk~~~~~~gGkGG-G~~~~AQggg~~~~~l~~al~~~~~~~~ 935 (936)
T PLN02900 861 AAVVLSSDEEKGKVSLVAAVPPGV-VKKGLKAGKWLGAIAKLCGGGGG-GKPGFAQGQGRDAEKLDAALEKARAFAV 935 (936)
T ss_pred eEEEEEecCCCCeEEEEEEEChHH-hhcCCCHHHHHHHHHHhcCCCCC-CcHHHeeeCCCCHHHHHHHHHHHHHHHh
Confidence 566665432457888888888876 66679999999999999999999 9999999999999999999999999875
No 2
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-245 Score=2062.97 Aligned_cols=881 Identities=55% Similarity=0.906 Sum_probs=815.5
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCcccccccccccccccccCCCCCC
Q 001932 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (995)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~~~~~~~~r~~~~QkCiR~gGkhnD 137 (995)
||++|||++||+||+++.|++|+||||||.+||||||+|||||||||+|||+ +++++||+|+|||||+||||||
T Consensus 2 ~ta~evR~tFldfF~~k~H~~V~SSsViP~dDpTLLFaNAGMNQFKpifLgt------~a~lkRa~NsQKCIRAGGKHND 75 (895)
T KOG0188|consen 2 LTASEVRKTFLDFFKSKHHKIVHSSSVIPFDDPTLLFANAGMNQFKPIFLGT------MAKLKRAANSQKCIRAGGKHND 75 (895)
T ss_pred ccHHHHHHHHHHHHHhcCceEeccCCcccCCCCeeEEeccchhhcchhhhhc------hhhhHhhhhhhhHHhccCCcCC
Confidence 7999999999999999999999999999999999999999999999999998 3568999999999999999999
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh-CCCC
Q 001932 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPAS 216 (995)
Q Consensus 138 l~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~-~~~~ 216 (995)
||+||+|.|||||||||||||||||||+|||.|||||||++||||++|||||||+||+++|||+|.||++||+++ ||++
T Consensus 76 LdDVGkD~yHhTfFEMlGNWSFGdYfK~Eac~~AwelLt~vygi~~dRLYVtYF~Gde~~Gl~~D~E~r~iW~~~Gvp~s 155 (895)
T KOG0188|consen 76 LDDVGKDFYHHTFFEMLGNWSFGDYFKEEACAWAWELLTFVYGIPTDRLYVTYFGGDEKLGLEPDLECREIWNELGVPDS 155 (895)
T ss_pred hhHhchhccccCchhhcCCCCcchHHHHHHHHHHHHHHHHhhcCCCceEEEEEecCccccCCCCCcHHHHHHHHcCCChh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccccCCCCccccCCCCccccCchH
Q 001932 217 RVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGF 296 (995)
Q Consensus 217 ~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDTGmGl 296 (995)
||+|||++|||||||+||||||||||||||+||++++.+||.|+|++|||||||||||||++||+|.|||+|||||||||
T Consensus 156 rILp~~~kDNFWEMGdtGPCGPCtEIHyDriG~r~a~~LVN~ddp~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGf 235 (895)
T KOG0188|consen 156 RILPFGMKDNFWEMGDTGPCGPCTEIHYDRIGGRDAVKLVNHDDPDVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGF 235 (895)
T ss_pred hccCCccccchhhhcCCCCCCcchhhhhhhhcCcchHHHhcCCCcCceeeeeeeeeeeccccCCccccCcccccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhheeeecCCCccCCCCcchHH
Q 001932 297 ERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVL 376 (995)
Q Consensus 297 ERl~~vlqg~~snydtDlf~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~f~i~DG~~Psn~grgYvl 376 (995)
|||++|||+|.||||||+|+||+++|++.++++ |+| ++.+.+|+||||+|||+||++++||||.+|+|+||||||
T Consensus 236 ERLvsVlQnk~SNYDTDlFtPif~aiq~~~~~~-YtG----~d~d~~D~AyRVvADH~RtlTvalsDG~~Pdn~GrgyvL 310 (895)
T KOG0188|consen 236 ERLVSVLQNKTSNYDTDLFTPIFEAIQEGTGAR-YTG----EDADGIDTAYRVVADHARTLTVALSDGGVPDNTGRGYVL 310 (895)
T ss_pred HHHHHHHhcccccccchhhHHHHHHHHHhcCCC-ccC----CccccchhhHHHHHHHhhhhheeeecCCCCCCCCChhHH
Confidence 999999999999999999999999999999997 998 466889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC
Q 001932 377 RRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-GK 455 (995)
Q Consensus 377 RrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~-~~ 455 (995)
|||||||+||++++||++++||.+|||+|++.||++||||..+...|.++|..||..|++||++|.++|++.++.+. ++
T Consensus 311 RRILRRavrya~e~l~~~~g~~~~LVpvvv~~lgd~fPEl~~~~~~v~diineEE~~F~ktl~rg~~~f~r~~~~~~~s~ 390 (895)
T KOG0188|consen 311 RRILRRAVRYAHEKLNAPPGFFSTLVPVVVETLGDAFPELKRDPQHVIDIINEEEAQFLKTLDRGRKLFDRVARELGSSK 390 (895)
T ss_pred HHHHHHHHHHHHHHhCCCcchhhhhhHHHHHHHhhhchhhhcCHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887 68
Q ss_pred CCChHHHHHhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCccc
Q 001932 456 VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDD 535 (995)
Q Consensus 456 ~l~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~ 535 (995)
+|||+++|+||||||||+|||++||+|+|+.||+++|+++.++.+++|+.+.+.+.+ +.++. +.+| +|+|+|
T Consensus 391 tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar~~A~~~Sk~~~~~~~~--i~ldv--l~el----~p~TdD 462 (895)
T KOG0188|consen 391 TIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAARQEAQEKSKGAGGGKLS--IDLDV--LSEL----VPPTDD 462 (895)
T ss_pred cCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHHHHHHHHHhccCCCCCc--ccHHH--HHhh----CCCCCC
Confidence 999999999999999999999999999999999999999999999999876443322 33332 3333 799999
Q ss_pred ccccccceeeeEEEEEEEeCCeeeeeecCCCeEEEEecceEEEEeeCCeeeccceeecccc---eEEEEeEEEeCCEEEE
Q 001932 536 SFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG---SFYVRNVQIYGGFVIH 612 (995)
Q Consensus 536 ~~~y~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~---~~~V~dv~~~~g~ivH 612 (995)
+++|.-...++++|++++.++.+++++..|+.++|+||+|+||+|.|||.+|+|.|+..+. .+.|..++- +|+|+|
T Consensus 463 s~KY~~~~~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~~~~~~fnV~~~~~-gg~vvh 541 (895)
T KOG0188|consen 463 SFKYNEFGVCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDGDEDFVFNVKRVQV-GGYVVH 541 (895)
T ss_pred ccccccCccchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEecCccceeehhhccc-CCEEEE
Confidence 9999536789999999999999999999999999999999999999999999999986543 344444555 799999
Q ss_pred EEeeccCCCcCCCCCeEehh-------hHhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHH
Q 001932 613 IGSLTEGAGRFSVGEEVICK-------LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRR 685 (995)
Q Consensus 613 ~~~~~~~~~~l~~G~~V~~~-------~~m~~HTAtHLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~ 685 (995)
.+.. + +.+++||+|.+. .+|++|||||||++|||+++ ..+.|+||++.||++||||++..++|.++|++
T Consensus 542 ~g~l-~--~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l-~~t~QkGSlV~pdklRfDf~~k~~lt~eql~~ 617 (895)
T KOG0188|consen 542 IGVL-E--GDLSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVL-KGTDQKGSLVAPDKLRFDFSTKGALTKEQLKK 617 (895)
T ss_pred Eeee-c--cccccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhc-ccccccccccChhHeeeecccCCCCCHHHHHH
Confidence 9986 3 789999999998 89999999999999999999 55789999999999999999988899999999
Q ss_pred HHHHHHHHHHccCCeEEEEcCHHHHhcccCchhhcCccCCCCEEEEEeCCcccccccCCCCccccceeeeeccCCCcccc
Q 001932 686 IESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNT 765 (995)
Q Consensus 686 IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~~~~f~e~y~d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nT 765 (995)
+|+.+|++|.++.||....+++++|++++|+|+.|+|.|||+||||.++. +..+++|+|||||+.||
T Consensus 618 vE~~~ne~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~YPdpVRVVsvg~-------------~~~~svE~CgGTH~~~t 684 (895)
T KOG0188|consen 618 VEDKINEFIQKNAPVYAKELPLAEAKKIPGLRAVFDEVYPDPVRVVSVGA-------------GQLTSVEFCGGTHLTNT 684 (895)
T ss_pred HHHHHHHHHhcCCceEEEecCHHHHhcCCCcccccCCccCCceEEEEecc-------------ccccceeecCCcccccc
Confidence 99999999999999999999999999999999999999999999999983 23579999999999999
Q ss_pred cccccEEEEeeeeccCCeeEEEEEechHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhhhcCCCccCCCChHHHHH
Q 001932 766 REAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRA 845 (995)
Q Consensus 766 geIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~l~~~~~~~~~~~~~~~~~~~l~~ 845 (995)
|+||.|.|++++++++|+|||.+|||+.|.+..+..+.+ ...+.+.+ ..+.|++..+...+..+.+|++.++++.+
T Consensus 685 ~~i~~fvI~se~~iakgirRivavTG~eA~~a~~~a~~~---~~~~~~~~-~~~~kei~~l~~~~~~a~iP~~~k~~~~~ 760 (895)
T KOG0188|consen 685 SHIGDFVIVSEEGIAKGIRRIVAVTGKEAQEALRLAEDL---DKDLRKTD-KALEKEIQELGENLDHAVIPYWQKDEIRE 760 (895)
T ss_pred cccceEEEechhhhhhceeEEEEeccHHHHHHHHHHHHH---Hhhhcccc-hhhHHHHHHHHHhhccccchHHhHHHHHH
Confidence 999999999999999999999999999999988876632 22222333 56788899999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccEEEEEeccCCCHHHHHHHHHHHHh-ccCCcEEEEEeeCC
Q 001932 846 KIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIE-QKGMPVMVFSTDET 924 (995)
Q Consensus 846 ~l~~l~~e~k~l~kel~~l~~~~a~~~a~~l~~~~~~~~~~~iv~~~~~~~d~~~L~~~a~~l~~-~~~~~v~ll~~~~~ 924 (995)
+++++++.++++.|..+...++....+++++.+. ..+.+++|..++.. ..+++ .|+.++++|+ +++
T Consensus 761 ~~k~~~K~~~d~~ra~~~~~qk~~l~~~~~~~~~--~~~~~~~v~~~~~~----------~~~k~~~~~~~i~lls-d~~ 827 (895)
T KOG0188|consen 761 LLKKLQKRMDDLSRALKAAVQKEVLEEAKQLKES--NPNQPLLVHYIESS----------KLLKKQAPDKSIMLLS-DDE 827 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCCEEEEEecch----------HHHHhcCCCCeeEEec-cCC
Confidence 9999999999999998887777777777777653 56788998888632 33455 5788999998 566
Q ss_pred CCeEEEEEecCCCcccccCCCHHHHHHHHhhccCCCCCCCCCCCcccccCCcCCHHHHHHHHHHHHHhhh
Q 001932 925 TNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKL 994 (995)
Q Consensus 925 ~~k~~~~~~v~~~~~~~~~~~A~~l~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~~~~~~l 994 (995)
.+|+.|.|.|++.+ ..++++|.+|++.++..+||||| ||+..|||.|.++++|++|++.|.++++.+|
T Consensus 828 ~gkv~~~c~V~~~a-~~~gl~a~~w~q~v~~~~ggk~g-gK~~~~q~~g~~~~~l~~av~~a~~~a~~~L 895 (895)
T KOG0188|consen 828 SGKVTCLCQVPQNA-ANKGLKASEWVQSVSGTMGGKGG-GKGVLAQATGNNVGCLDEAVSLATEFALLKL 895 (895)
T ss_pred CCeEEEEEeecHHH-hhccCCHHHHHHHHHHhhCCccC-CccchhhhhCCcHHHHHHHHHHHHHHhhccC
Confidence 78999999999998 88899999999999999999999 9999999999999999999999999998665
No 3
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-240 Score=2117.19 Aligned_cols=858 Identities=43% Similarity=0.744 Sum_probs=781.3
Q ss_pred CCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCcccccccccccccccccCCCC
Q 001932 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKH 135 (995)
Q Consensus 56 ~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~~~~~~~~r~~~~QkCiR~gGkh 135 (995)
.+||++|||++||+||++|||+++|||||||+||||||||||||+||||||+|.++|++ .|+||||||||+
T Consensus 4 ~~~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~-----~r~~~sQkcIR~---- 74 (879)
T COG0013 4 MKLTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPA-----NRAVTSQKCIRT---- 74 (879)
T ss_pred ccCCHHHHHHHHHHHHHHCCCeecCCCCcCCCCCCCeEEeecccccchhhhcCCCCCCC-----CCeecccccccc----
Confidence 44999999999999999999999999999999999999999999999999999977764 499999999999
Q ss_pred CCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh--C
Q 001932 136 NDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--L 213 (995)
Q Consensus 136 nDl~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~--~ 213 (995)
|||||||+|+|||||||||||||||||||+|||.|||||||++|||||||||||||+ .||||+++|+++ +
T Consensus 75 NDieNVG~T~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~--------~Ddea~~~W~~~~gi 146 (879)
T COG0013 75 NDIDNVGYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYE--------DDDEAYNEWEKIIGI 146 (879)
T ss_pred CchhhcCccccchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEEEEEec--------CchHHHHHHHhhcCC
Confidence 899999999999999999999999999999999999999999999999999999997 599999999998 9
Q ss_pred CCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCC--CCCCCCCCCCCeeEEeeeeccccccC-CCCccccCCCCcc
Q 001932 214 PASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRD--AASLVNNDDPTCIEIWNIVFIQFNRE-SDGSLKPLPAKHV 290 (995)
Q Consensus 214 ~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~--~~~~~~~~~~~~lEiwNlVFmq~~~~-~~g~l~~Lp~~~I 290 (995)
|++||+|+|.+||||+||+ ||||||||||||||+..+ ..+.+++|++|||||||||||||||+ .+|+|.|||+|||
T Consensus 147 p~~rIir~~~~dNfW~~G~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~I 225 (879)
T COG0013 147 PPERIIRIGASDNFWEMGD-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNI 225 (879)
T ss_pred CHHHeeecCcCCCCCCCCC-cCCCCceEEEEcCCcccCCCCCCCcCCCCCceEEEeeeeehhhccCCCCCCcccCCCCCc
Confidence 9999999999999999999 999999999999976433 34678899999999999999999999 6999999999999
Q ss_pred ccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhheeeecCCCccCCC
Q 001932 291 DTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNE 370 (995)
Q Consensus 291 DTGmGlERl~~vlqg~~snydtDlf~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~f~i~DG~~Psn~ 370 (995)
|||||||||+|||||+|||||||+|.|||+.+++++|. .|. .+.+.++.+|||||||+||++|||+|||+|||+
T Consensus 226 DTGmGLERi~~vlQ~~~tnyd~dlf~~ii~~~e~~~g~-~~~-----~~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNe 299 (879)
T COG0013 226 DTGMGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTGK-KYG-----EDEEDPDVSFRVIADHIRSLAFMIADGVLPSNE 299 (879)
T ss_pred ccCccHHHHHHHHcCCCcchhhhhhHHHHHHHHHHhCC-cCC-----ccccccceeEEEehhHHHHHHHHHhCCCCcCCC
Confidence 99999999999999999999999999999999999987 353 222334789999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001932 371 GREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQ 450 (995)
Q Consensus 371 grgYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~ 450 (995)
|||||||||||||+||+ ++||++.|||++|||++++.|+++||||.++++.|+++|+.||++|.+||++|+++|++.++
T Consensus 300 grGYvlRriiRRa~R~~-~~LG~~~~fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~ 378 (879)
T COG0013 300 GRGYVLRRIIRRALRHG-KLLGIKEPFLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELA 378 (879)
T ss_pred CccHHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC-CCCChHHHHHhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcC
Q 001932 451 DVQG-KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRG 529 (995)
Q Consensus 451 ~~~~-~~l~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (995)
++++ ++|+|++||+||||||||+|||++||+|+|++||+++|+.+|++||++||+.+ .+.. .........+.. .
T Consensus 379 ~~~~~~~l~ge~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~ar~~~-~~~~---~~~~~~~~~~~~-~ 453 (879)
T COG0013 379 KLKKSKTLDGEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARASA-GSGE---GAKESEDLELID-K 453 (879)
T ss_pred hhccCCccChHHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHHhhhcc-cccc---ccchhhhhhhhc-c
Confidence 8874 78999999999999999999999999999999999999999999999999754 2111 001111111111 2
Q ss_pred CCCcccccccccceeeeEEEEEEEeCCeeeeeecCCCeEEEEecceEEEEeeCCeeeccceeecc-cceEEEEeEEEeC-
Q 001932 530 VLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGL-FGSFYVRNVQIYG- 607 (995)
Q Consensus 530 ~~~t~~~~~y~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~-~~~~~V~dv~~~~- 607 (995)
.++|+ |.||+ ..+++++|+.++.++..|+++.++++++||||+||||||+|||++|+|+|..+ +..+.|.||++.+
T Consensus 454 ~~~te-f~gY~-~~~~~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~~~~~V~dvqK~~~ 531 (879)
T COG0013 454 LPETE-FLGYD-DLEMEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGGGRFEVTDVQKVGN 531 (879)
T ss_pred CCCce-eeecc-cccceEEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEecCCcEEEEEEEEEcCC
Confidence 45665 99999 77888999999988766899999999999999999999999999999999887 4889999999987
Q ss_pred CEEEEEEeeccCCCcCCCCCeEehh-------hHhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCH
Q 001932 608 GFVIHIGSLTEGAGRFSVGEEVICK-------LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDP 680 (995)
Q Consensus 608 g~ivH~~~~~~~~~~l~~G~~V~~~-------~~m~~HTAtHLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~ 680 (995)
|.++|.+.+.. |.|++|+.|.++ ++|+||||||||++|||+++|.|++|+||.+.++++||||+|++++|+
T Consensus 532 ~~~vH~~~~~~--G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~ 609 (879)
T COG0013 532 GVIVHKGKVES--GELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTA 609 (879)
T ss_pred ceEEEEEeecc--CccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCCCCH
Confidence 89999999876 899999999999 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCeEEEEcCHHHHhcccCchhhcCccCCCCEEEEEeCCcccccccCCCCccccceeeeeccCC
Q 001932 681 EHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGT 760 (995)
Q Consensus 681 eeL~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~~~~f~e~y~d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGT 760 (995)
|+|++||+.+|++|++|+||++.+|++++|++. |++++|+++|++.||||+|+ ++|.|+||||
T Consensus 610 Eel~~IE~~vNe~I~~n~~V~~~~m~~~eAk~~-Ga~alfGekY~~~VRVV~ig----------------~~SvElCGGT 672 (879)
T COG0013 610 EELKEIERLVNEIIRENLPVKTEEMDLDEAKAK-GAMALFGEKYGDEVRVVEIG----------------DFSVELCGGT 672 (879)
T ss_pred HHHHHHHHHHHHHHHcCCceeEEEccHHHHHHh-ChHhhcCCcCCCeEEEEEEC----------------CceeeccCCc
Confidence 999999999999999999999999999999998 99999999999999999999 6899999999
Q ss_pred CcccccccccEEEEeeeeccCCeeEEEEEechHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhhhcCCCccCCCCh
Q 001932 761 HLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKK 840 (995)
Q Consensus 761 HV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~l~~~~~~~~~~~~~~~~~ 840 (995)
||.|||+||.|||++++++++|+|||+|+||..|+++.+..++.+++++.++++ +
T Consensus 673 Hv~~Tg~IG~fkI~~e~~i~aGVrRIeavtG~~a~~~~~~~~~~l~~~a~~lk~-------------------------~ 727 (879)
T COG0013 673 HVSNTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQEQEDLLKEIASLLKV-------------------------P 727 (879)
T ss_pred ccCCccceeeEEEEEecccccCeEEEEEEcCHHHHHHHHHHHHHHHHHHHHhCC-------------------------C
Confidence 999999999999999999999999999999999999999888888877776654 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEE
Q 001932 841 ADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAA---ASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVM 917 (995)
Q Consensus 841 ~~l~~~l~~l~~e~k~l~kel~~l~~~~a~~~a~~l~~~~---~~~~~~~iv~~~~~~~d~~~L~~~a~~l~~~~~~~v~ 917 (995)
.++..+++.+++++|+++|++.+++.+++......+.... +++|.++++..++ +.|++.|+.+++.++++....++
T Consensus 728 ~~~~~kv~~l~~~~k~lekel~~lk~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~-~~d~~~Lr~~a~~lk~k~~~~vi 806 (879)
T COG0013 728 PELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAKAEEIGGVKVLAKEVD-GADMKELREIADDLKKKLGSAVI 806 (879)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeCCEEEEEEEec-CCCHHHHHHHHHHHHhhcCCcEE
Confidence 3455589999999999999999999877776666544432 2578899888887 68999999999999995555666
Q ss_pred EEEeeCCCCeEEEEEecCCCcccccCCCHHHHHHHHhhccCCCCCCCCCCCcccccCCcCCHHHHHHHHHHHHHhhh
Q 001932 918 VFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKL 994 (995)
Q Consensus 918 ll~~~~~~~k~~~~~~v~~~~~~~~~~~A~~l~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~~~~~~l 994 (995)
++.+.. ++|+.+++++++++ .. .++|++|+++++..+||||| |||+||||||+++.++++|++.+.+++++.|
T Consensus 807 vl~~~~-~~Kv~~~~~v~~~~-~~-~~~a~~lvk~la~~~gG~GG-Gr~d~Aqggg~d~~~~~~al~~~~~~i~~~l 879 (879)
T COG0013 807 VLASVA-DGKVSLVVAVSKDL-TD-KVKAGELVKELAAIVGGKGG-GRPDMAQGGGKDPEKLDEALELVIEWVKEKL 879 (879)
T ss_pred EEEEec-CCeEEEEEEechhh-hc-ccCHHHHHHHHHHhcCCCCC-CchhhheeCCCCcccHHHHHHHHHHHHHhhC
Confidence 665533 34999999999665 43 49999999999999999999 9999999999999999999999999998764
No 4
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=1.2e-228 Score=2071.81 Aligned_cols=837 Identities=42% Similarity=0.714 Sum_probs=761.2
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCcccccccccccccccccCCCCCCCCCC
Q 001932 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDV 141 (995)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~~~~~~~~r~~~~QkCiR~gGkhnDl~~V 141 (995)
|||++||+||++|||+++|||||||+|||||||||||||||||||+|+++|+ ++|+||||||||+ ||||||
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----nDld~V 71 (851)
T TIGR00344 1 EIRQTFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPP-----SNRLVNAQPCIRL----NDIENV 71 (851)
T ss_pred CHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cchhhh
Confidence 6999999999999999999999999999999999999999999999999986 5899999999999 899999
Q ss_pred CCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh-CCCCCccc
Q 001932 142 GKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPASRVLP 220 (995)
Q Consensus 142 G~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~-~~~~~i~~ 220 (995)
|+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||++ |+||++||+++ ||++||++
T Consensus 72 G~t~rHhTfFEMlGnfSFgdYfK~eai~~awe~lT~~~~i~~~rl~vTv~~~--------D~ea~~iW~~~g~~~~~i~~ 143 (851)
T TIGR00344 72 GRTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLTSVLGLDKERLYVTVYED--------DEEAYEIWEKHGIPAERIIR 143 (851)
T ss_pred cCCCcchhhHHhhcccchhhhhHHHHHHHHHHHHhhhcCCChHHEEEEEcCC--------CHHHHHHHHhcCCCHHHccc
Confidence 9999999999999999999999999999999999999999999999999974 89999999999 99999999
Q ss_pred CCCCCCcccCCCCCCCcCceeeEeecCC---CCCCCCCCCCCCCCeeEEeeeeccccccCCCCccccCCCCccccCchHH
Q 001932 221 FGCKDNFWEMGDTGPCGPCSEIHYDRTG---NRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (995)
Q Consensus 221 ~~~~dNfW~mG~~GpcGPcsEi~yd~~~---~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDTGmGlE 297 (995)
+|.+||||+||+ ||||||||||||+++ |+.+.+++|.||+|||||||||||||||++||+|+|||+||||||||||
T Consensus 144 ~~~~dNfW~~G~-GpcGPcsEi~yD~g~~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLE 222 (851)
T TIGR00344 144 CGDKDNFWDMGD-GPCGPCTEIYYDRGEFVGGKPGEPEFFEENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLE 222 (851)
T ss_pred CCccCCcCCCCC-cCCccCeEEEEecCcccCCCCCcccccCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHH
Confidence 999999999999 999999999999864 3345567788999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccc--cccchhhhhhhhhhhheeeecCCCccCCCCcchH
Q 001932 298 RLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDAD--KVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (995)
Q Consensus 298 Rl~~vlqg~~snydtDlf~pli~~i~~~~~~~~y~g~~~~~~~~--~~~~~~rviaDH~R~~~f~i~DG~~Psn~grgYv 375 (995)
||+|||||++||||||+|.|||++|++++|+++|.+..+..+.+ ..+.||||||||+||++|||+||++|||+|||||
T Consensus 223 Rl~~vlqg~~snydtD~f~~ii~~i~~~~g~~y~~~~~~~~d~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grgYv 302 (851)
T TIGR00344 223 RFVAVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSLRVIADHTRALAFMLADGVVPSNEGRGYV 302 (851)
T ss_pred HHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCCCcCccccccccccccchheeeehhhhhhhhhhhccCcccCCCCCchh
Confidence 99999999999999999999999999999986554443332322 2346999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001932 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGK 455 (995)
Q Consensus 376 lRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~ 455 (995)
||||||||+|+|+ +||++.|||++||+.|++.|++.||||.++++.|++||..||++|.+||++|+++|++.+++++++
T Consensus 303 lRrilRRa~r~~~-~lg~~~~fl~~lv~~~~~~m~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~l~~~~~~~~~~ 381 (851)
T TIGR00344 303 LRRLIRRALRHGK-KLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLFEKLLKKLGKK 381 (851)
T ss_pred HHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHHhhhChHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999994 799999999999999999999999999999999999999999999999999999999999876567
Q ss_pred CCChHHHHHhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCccc
Q 001932 456 VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDD 535 (995)
Q Consensus 456 ~l~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~ 535 (995)
+|||++||+||||||||+|||++||+|+|+.||+++|+++|++||++||++++... ...+ ...+.. ..++| +
T Consensus 382 ~i~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~F~~~~~~~~~~sr~~~~~~~---~~~~---~~~~~~-~~~~t-~ 453 (851)
T TIGR00344 382 ELDGEDAFKLYDTYGFPVELTKEIAEERGLTVDIPGFETLMAEQRERSKAASQTIS---FELQ---EIALAN-VYPAT-E 453 (851)
T ss_pred ccCHHHHHHHHHccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhhhhhccc---cccc---HHHHhc-ccCCc-c
Confidence 89999999999999999999999999999999999999999999999997754321 1111 222222 12445 5
Q ss_pred ccccccceeeeEEEEEEEeCCeeeeeecCCCeEEEEecceEEEEeeCCeeeccceeecccceEEEEeEEEeCCEEEEEEe
Q 001932 536 SFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGS 615 (995)
Q Consensus 536 ~~~y~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~ivH~~~ 615 (995)
|.+|+ ..+++|+|+++..+++.++++..++.++|+||+|+|||||||||+|+|+|..++..++|++|++.+|.|+|.+.
T Consensus 454 ~l~Y~-~~~~~a~V~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~ 532 (851)
T TIGR00344 454 FLGYE-DLEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGYLIANDGKFRVVDVQKPNGVVFHFGE 532 (851)
T ss_pred cccee-cccccEEEEEEEeCCccceecccCCceEEEEeCCCCCCCCCCCCCCEEEEecCCcEEEEEEEEEECCEEEEEEE
Confidence 99999 58999999999988888888888888999999999999999999999999877678999999999999999987
Q ss_pred eccCCCcCCCCCeEehh-------hHhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHH
Q 001932 616 LTEGAGRFSVGEEVICK-------LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIES 688 (995)
Q Consensus 616 ~~~~~~~l~~G~~V~~~-------~~m~~HTAtHLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~ 688 (995)
+.. +++++|++|.+. ++|++|||+|||++||+++||.+++|.||+++++++||||++++++|++++++||+
T Consensus 533 ~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~ 610 (851)
T TIGR00344 533 VEG--GSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIED 610 (851)
T ss_pred ecc--CCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCCCCHHHHHHHHH
Confidence 654 678999999998 99999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHccCCeEEEEcCHHHHhcccCchhhcCccCCCCEEEEEeCCcccccccCCCCccccceeeeeccCCCccccccc
Q 001932 689 IVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREA 768 (995)
Q Consensus 689 ~~NeiI~~nlpV~~~~~~~eEA~~~~g~~~~f~e~y~d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeI 768 (995)
.||++|++|+||.+.+++++||++. +.+++|+++|++.||||+|+ ++|.++||||||+|||+|
T Consensus 611 ~vNelI~~n~pV~~~~~~~eeA~~~-~~~~~~~e~y~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeI 673 (851)
T TIGR00344 611 LVNEQILANIPIKVIFMDLDEAKAK-GAFALFGEKYGEKVRVVSVG----------------DVSVELCGGTHVRNTGEI 673 (851)
T ss_pred HHHHHHHhCCceEEEEeCHHHHHhc-chhhhcCCCCCCeEEEEEEC----------------CeeccCCCCCccCChhhC
Confidence 9999999999999999999999997 66677888899999999999 689999999999999999
Q ss_pred ccEEEEeeeeccCCeeEEEEEechHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhhhcCCCccCCCChHHHHHHHH
Q 001932 769 EAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIA 848 (995)
Q Consensus 769 g~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~l~~~~~~~~~~~~~~~~~~~l~~~l~ 848 (995)
|.|+|++.+++++|++||+|+||.+|++++++..+.+++++..+++ ++.++.++++
T Consensus 674 g~~kI~~~~~~~~G~~RIe~v~G~~A~~~~~~~~~~l~~l~~~L~~------------------------~~~~i~~~v~ 729 (851)
T TIGR00344 674 GLFKIVKESGIAAGVRRIEAVTGNAAIEYLNEQEDKLKELADILKV------------------------TPNELPKKIE 729 (851)
T ss_pred eEEEEEEEeEecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCC------------------------CHHHHHHHHH
Confidence 9999999999999999999999999999999888888888777664 4567888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEeeCCCCe
Q 001932 849 LLQNQVRKAQKKVAEENLQKAVKVATETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNK 927 (995)
Q Consensus 849 ~l~~e~k~l~kel~~l~~~~a~~~a~~l~~~~~-~~~~~~iv~~~~~~~d~~~L~~~a~~l~~~~~~~v~ll~~~~~~~k 927 (995)
++++++++++|++++++.+++...++++.+.++ .++.++++..++ +.+++.|+.+++.++++.+..++++++ ..+++
T Consensus 730 ~l~~e~k~l~k~~~~l~~~l~~~~~~~l~~~~~~~~~~~~i~~~~~-~~d~~~lr~la~~l~~~~~~~vvll~~-~~~~k 807 (851)
T TIGR00344 730 RFFEEWKALQKELESLKLKIADQKIDELKDKAETINGVKVLVEVVD-AKDMKSLKTMADRLKSKLGSAIYVLAS-FANGK 807 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCeEEEEEEcc-CCCHHHHHHHHHHHHhhcCCeEEEEEE-cCCCe
Confidence 999999999999999999998888888766544 567788887776 568999999999998865556666665 34678
Q ss_pred EEEEEecCCCcccccCCCHHHHHHHHhhccCCCCCCCCCCCccccc
Q 001932 928 AVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQG 973 (995)
Q Consensus 928 ~~~~~~v~~~~~~~~~~~A~~l~k~v~~~lgGkGG~Gk~~~AQG~g 973 (995)
+.+++++++++ .+++++|++|++++++.+||||| |+|+||||+|
T Consensus 808 ~~~v~~~~~~~-~~~~~~A~~lvk~~~~~~gGkGG-G~~~~AQggg 851 (851)
T TIGR00344 808 VKLVCGVSNDV-LNKGIKAGELINQIAQVLGGKGG-GRPDLAQAGG 851 (851)
T ss_pred EEEEEEEChhH-hhcCCCHHHHHHHHHHHcCCCCC-CcHHhcccCC
Confidence 88888888876 66679999999999999999999 9999999985
No 5
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.1e-226 Score=2058.96 Aligned_cols=851 Identities=46% Similarity=0.773 Sum_probs=778.9
Q ss_pred CCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCcccccccccccccccccCCCCC
Q 001932 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136 (995)
Q Consensus 57 ~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~~~~~~~~r~~~~QkCiR~gGkhn 136 (995)
.||++|||++||+||++|||+++|||||||+|||||||||||||||||||+|+++|+ ++|+||||||||+ |
T Consensus 1 ~~~~~eiR~~fl~fF~~~~H~~v~s~~lvp~~d~~llf~nAGm~~fk~~f~g~~~p~-----~~r~~~~QkCiR~----n 71 (865)
T PRK00252 1 MMTSAEIRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPP-----YPRATTSQKCIRT----N 71 (865)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEecCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----c
Confidence 489999999999999999999999999999999999999999999999999999886 5899999999999 9
Q ss_pred CCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh--CC
Q 001932 137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LP 214 (995)
Q Consensus 137 Dl~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~--~~ 214 (995)
||||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||. +|+||++||++. ||
T Consensus 72 Dld~VG~t~rHhTfFEMlGn~sfgdYfK~eai~~awe~lt~~~~i~~~~l~vt~~~--------~D~e~~~iW~~~~g~~ 143 (865)
T PRK00252 72 DLENVGYTARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGLPKEKLYVTVYE--------DDDEAYDIWKKEIGVP 143 (865)
T ss_pred chhhccCCCCchHHHHHhcccchhhhhHHHHHHHHHHHHHHHhCCCHHHEEEEEcC--------CCHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999997 489999999977 99
Q ss_pred CCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCC--CCCCCCCCCCCCeeEEeeeeccccccCCCCccccCCCCcccc
Q 001932 215 ASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNR--DAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDT 292 (995)
Q Consensus 215 ~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~--~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDT 292 (995)
++||+++|.+||||+||+|||||||||||||||... ++..++|.|+||||||||||||||||+.+|+|.|||+|||||
T Consensus 144 ~~~i~~~~~~dNfW~~G~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~~~~lEiwNlVF~q~~~~~~g~~~~Lp~~~iDT 223 (865)
T PRK00252 144 PERIIRIGKKDNFWSMGDTGPCGPCSEIFYDRGEEYWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEDGNLTPLPKKNIDT 223 (865)
T ss_pred HHHeecCCccCCccccCCCcCCCCCeEEEEecCcccCCCCCCCCcCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeec
Confidence 999999999999999999999999999999997432 345678899999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhheeeecCCCccCCCCc
Q 001932 293 GLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGR 372 (995)
Q Consensus 293 GmGlERl~~vlqg~~snydtDlf~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~f~i~DG~~Psn~gr 372 (995)
|||||||+|||||++||||||+|.|||++|++++|+ +|. .++||||||||+||++|||+||++|||+||
T Consensus 224 G~GlER~~~ilq~~~snydtd~f~~~i~~i~~~~~~-~y~----------~~~a~rviaDH~R~~~f~i~DG~~Psn~gr 292 (865)
T PRK00252 224 GMGLERIAAVLQGVHSNYETDLFRPLIKAIEELTGV-KYE----------DDVSFRVIADHIRAVAFLIADGVLPSNEGR 292 (865)
T ss_pred CcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCC-CCC----------CCceEEEEcchHHHHHHHHccCcccCCCCc
Confidence 999999999999999999999999999999999998 463 257999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001932 373 EYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDV 452 (995)
Q Consensus 373 gYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~ 452 (995)
|||||||||||+|++ +.||++.|||++|||.|++.|++.||||.++++.|++||..||++|.+||++|+++|++.+++.
T Consensus 293 gYvlRrilRRa~r~~-~~lg~~~~~l~~lv~~~~~~~~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~ 371 (865)
T PRK00252 293 GYVLRRILRRAVRHG-RLLGIKEPFLYKLVPVVIDEMGDAYPELKEKQDLIEKVLKAEEERFLKTLERGLKLLEEALAKL 371 (865)
T ss_pred chHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999 6899999999999999999999999999999999999999999999999999999999999876
Q ss_pred c-CCCCChHHHHHhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCC
Q 001932 453 Q-GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVL 531 (995)
Q Consensus 453 ~-~~~l~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (995)
+ ++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||+.++.... ...+..+.. ..
T Consensus 372 ~~~~~l~g~~~f~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~------~~~~~~~~~-~~- 443 (865)
T PRK00252 372 KAGKVLSGEDAFKLYDTYGFPLDLTAEIARERGLTVDEEGFEAAMEEQRERARAARKFKGD------YNALEELLD-DL- 443 (865)
T ss_pred cCCCccCHHHHHHHHhccCCCHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccc------hhHHHHHhh-cC-
Confidence 4 35899999999999999999999999999999999999999999999999876432210 111223322 22
Q ss_pred CcccccccccceeeeEEEEEEEeCCeeeeeecCCCeEEEEecceEEEEeeCCeeeccceeecccceEEEEeEEEe-CCEE
Q 001932 532 ATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIY-GGFV 610 (995)
Q Consensus 532 ~t~~~~~y~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~-~g~i 610 (995)
+|+ |.||+ ..+++|+|++|+.+++.++++.+++.++|+||+|+|||||||||+|+|+|.. +..++|++|++. +|.+
T Consensus 444 ~t~-f~~Y~-~~~~~a~v~~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~-~~~~~V~~v~~~~~g~i 520 (865)
T PRK00252 444 ATE-FVGYD-TLEAEAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIED-GGVFEVTDTQKPPNGLI 520 (865)
T ss_pred CCe-eeeee-eccccEEEEEEEeCCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEee-CcEEEEEEEEEccCCEE
Confidence 464 88999 6889999999998888999998888899999999999999999999999987 678999999997 9999
Q ss_pred EEEEeeccCCCcCCCCCeEehh-------hHhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHH
Q 001932 611 IHIGSLTEGAGRFSVGEEVICK-------LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHL 683 (995)
Q Consensus 611 vH~~~~~~~~~~l~~G~~V~~~-------~~m~~HTAtHLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL 683 (995)
+|.+.... +.+++|++|.+. +||++|||+|||++|++++||.+++|.|++++++++||||++++++|++++
T Consensus 521 ~H~~~~~~--~~l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~~lt~eel 598 (865)
T PRK00252 521 VHRGKVEE--GELKVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEALTPEEL 598 (865)
T ss_pred EEEEEecc--CCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeecCCCCCHHHH
Confidence 99997544 678999999998 999999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHHHccCCeEEEEcCHHHHhcccCchhhcCccCCCCEEEEEeCCcccccccCCCCccccceeeeeccCCCcc
Q 001932 684 RRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLS 763 (995)
Q Consensus 684 ~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~~~~f~e~y~d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~ 763 (995)
.+||+.||++|++|+||++.+++++||++. +++++|+++|++.||||+|+ ++|.++||||||+
T Consensus 599 ~~IE~~vN~lI~~n~pV~~~~~~~~eA~~~-~~~~~~~~~y~~~VRVV~Ig----------------~~d~~~CgGTHV~ 661 (865)
T PRK00252 599 RKIEDLVNEKIRENLPVETEEMSIEEAKKM-GAMALFGEKYGDEVRVVSIG----------------DFSIELCGGTHVS 661 (865)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCHHHHHhC-CchhhccccCCCeEEEEEEC----------------CceeeCCCCCccC
Confidence 999999999999999999999999999995 78888888899999999998 6899999999999
Q ss_pred cccccccEEEEeeeeccCCeeEEEEEechHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhhhcCCCccCCCChHHH
Q 001932 764 NTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADI 843 (995)
Q Consensus 764 nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~l~~~~~~~~~~~~~~~~~~~l 843 (995)
|||+||.|+|++.+++++|++||+|+||.+|++++++.++.++++++++++ ++.++
T Consensus 662 nTgeIg~~kI~~~~~~~~g~~RI~~v~G~~A~~~~~~~~~~l~~~~~~l~~------------------------~~~~l 717 (865)
T PRK00252 662 NTGDIGLFKIVSESGVAAGVRRIEAVTGEAALEYLNEQEALLKELAALLKA------------------------KPSEL 717 (865)
T ss_pred CcccCeEEEEEEEeeecCCeEEEEEEECHHHHHHHHHHHHHHHHHHHHhCC------------------------CHHHH
Confidence 999999999999999999999999999999999999988888888877765 45688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEee
Q 001932 844 RAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTD 922 (995)
Q Consensus 844 ~~~l~~l~~e~k~l~kel~~l~~~~a~~~a~~l~~~~~-~~~~~~iv~~~~~~~d~~~L~~~a~~l~~~~~~~v~ll~~~ 922 (995)
.++++++++++++++|++++++.+++...++++.++.. .++.++++..++ +.+++.|+.+++.+++..+..+++++.
T Consensus 718 ~~~v~~l~~e~k~l~k~~~~l~~~l~~~~~~~l~~~~~~i~~~~~vv~~~~-~~d~~~L~~la~~l~~~~~~~vvll~~- 795 (865)
T PRK00252 718 PERVEALLEELKELEKELEQLKAKLAAAAAGDLLAQAKEVNGVKVLAAQVE-GVDAKALRTLADDLKDKLGSGVVVLAT- 795 (865)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCeEEEEEEec-CCCHHHHHHHHHHHHhhcCCeEEEEEE-
Confidence 89999999999999999999999999888888776543 456677777775 679999999999998753335555554
Q ss_pred CCCCeEEEEEecCCCcccccCCCHHHHHHHHhhccCCCCCCCCCCCcccccCCcCCHHHHHHHHHHHHHhhh
Q 001932 923 ETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKL 994 (995)
Q Consensus 923 ~~~~k~~~~~~v~~~~~~~~~~~A~~l~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~~~~~~l 994 (995)
..++++.+++++++++ ..++++|++|++++++.+||||| |++.+|||+|+++++++++++.+.++++.+|
T Consensus 796 ~~~~k~~~vv~v~~~~-~~~gl~A~~l~k~l~~~lgGkGG-Gk~~~AQGgg~~~~~l~~al~~a~~~l~~~~ 865 (865)
T PRK00252 796 VEDGKVSLVVAVTKDL-TDKGLKAGDLVKELAKIVGGKGG-GRPDMAQAGGKDPAKLDEALAAVKEWLAAKL 865 (865)
T ss_pred ccCCeEEEEEEEChhH-hhcCcCHHHHHHHHHHhcCCCCC-CcHHHeeeCCCCHHHHHHHHHHHHHHHHhhC
Confidence 3356888888888876 55679999999999999999999 9999999999999999999999999997654
No 6
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=5.8e-203 Score=1848.15 Aligned_cols=791 Identities=27% Similarity=0.444 Sum_probs=709.2
Q ss_pred CcCCCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccc-CCCCCCCccccccccccccccccc
Q 001932 53 PQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRA 131 (995)
Q Consensus 53 ~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~f~-G~~~p~~~~~~~~r~~~~QkCiR~ 131 (995)
+..++||++|||++||+||++|||++||||||||+||++||||||||+||||||+ |.++|+ ++|+|+||||||+
T Consensus 51 ~~~~~~~~~eiR~~fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp-----~~r~~~sQkCiR~ 125 (902)
T TIGR03683 51 IFSKKYTLDEMREAFLSFFEKHGHTRIKRYPVVARWRDDVYLTIASIADFQPWVTSGLVPPP-----ANPLVISQPCIRL 125 (902)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCCCEEeCCcCcCcCCCCCeeEeecchhhhhHhhcCCCCCCC-----CCCceeccccccc
Confidence 3446799999999999999999999999999999999999999999999999998 999886 4799999999999
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHH
Q 001932 132 GGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEAR 206 (995)
Q Consensus 132 gGkhnDl~~VG~t~rH~TfFEMlGn~Sfg-----dYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~ 206 (995)
|||||||+|+||||||||||||||| ||||+|||+|||||| ++||||++|| |+
T Consensus 126 ----nDldnVG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~l-~~lgi~~~~i--~~---------------- 182 (902)
T TIGR03683 126 ----NDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFL-EELGIDPEEI--TY---------------- 182 (902)
T ss_pred ----cccccccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHHH-HHcCCCHHHe--ee----------------
Confidence 8999999999999999999999999 999999999999999 9999999998 33
Q ss_pred HHHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccccCC-------C
Q 001932 207 DIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRES-------D 279 (995)
Q Consensus 207 ~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~-------~ 279 (995)
+||||+|| ||||||||||| + | |||||||||||+|++ |
T Consensus 183 -----------------~enfW~~G--GpcGPcsEi~~-~--g--------------lEiwnlVFmq~~~~~~~~~~~~~ 226 (902)
T TIGR03683 183 -----------------KESPWEGG--GNAGPCFEVIV-G--G--------------LELATLVFMQYEEDKEGEIEIKG 226 (902)
T ss_pred -----------------cCCccCCC--CCCCCceeeee-C--c--------------EeeeeeeeeeeccccccccccCC
Confidence 69999999 99999999999 2 2 999999999999998 8
Q ss_pred CccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCcccccc----
Q 001932 280 GSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDADKVD---- 344 (995)
Q Consensus 280 g~l~~Lp~~~IDTGmGlERl~~vlqg~~snydtDlf~pli~~i~~~~~~~-----------~y~g~~~~~~~~~~~---- 344 (995)
|+|+|||+||||||||||||+|||||+|||||| +|.|||++|++++|++ +|+|.++.++.+.++
T Consensus 227 g~~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~y~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 305 (902)
T TIGR03683 227 GRYSEMPLKIVDTGYGLERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDEEILAENARLAGMMDIEDEEDLRELRK 305 (902)
T ss_pred CeeeeCCCCceecCCCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhccccCccccchhhHHhh
Confidence 999999999999999999999999999999999 9999999999999975 467777654433222
Q ss_pred --------------------chhhhhhhhhhhheeeecCCCccCCCCcchHHHHHHHHHHHHhHhhhCCCcchhhhHHHH
Q 001932 345 --------------------MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNI 404 (995)
Q Consensus 345 --------------------~~~rviaDH~R~~~f~i~DG~~Psn~grgYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~ 404 (995)
.++|+||||+||++|||+||++|||+|||||||||||||+|++ +.||++.| |++||+.
T Consensus 306 ~~a~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~ 383 (902)
T TIGR03683 306 KVADKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARLVIRRTLRLM-RELGLDIP-LSDLVEM 383 (902)
T ss_pred hhhhhcccchhhhhhhccccceEEEEcchHHHHHHHHhcCCccCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHHHHH
Confidence 4679999999999999999999999999999999999999999 57999999 9999999
Q ss_pred HHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHhhccCCCChHHHHHHHHHcC
Q 001932 405 VVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERG 484 (995)
Q Consensus 405 v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~~l~g~~~f~Lydt~G~p~dl~~~~a~e~g 484 (995)
+++.|++.||||.++++.|++||+.||++|.+||++|+++|++.+++ ++.|||++||+||||||||+|||++||+|+|
T Consensus 384 ~~~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~Tl~~G~~~~~~~~~~--~~~i~g~~~f~LyDTyGfP~dl~~eia~e~g 461 (902)
T TIGR03683 384 QLEELKKIYPELKENKDYILDILDLEEEKYRETLERGRRIVERLLKT--KKEIPLDDLIELYDSHGIPPEIVKEIAAELG 461 (902)
T ss_pred HHHHHhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcCCHHHHHHHHHccCCCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999975 5689999999999999999999999999999
Q ss_pred ceeChh-hHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccccc--cceeeeEEEEEEEeCCeeeee
Q 001932 485 LLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEFIES 561 (995)
Q Consensus 485 ~~vd~~-~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~y~--y~~~~~a~Vl~i~~~~~~v~~ 561 (995)
++||++ +|+++|++|+++|+++.+. . .... ..+ .++|+|+ +.+|+ |..+++|+|+++..
T Consensus 462 ~~vd~~~~F~~~~~~~~~~~~~~~~~-~-----~~~~--~~~--~~~~~T~-~l~y~~~~~~e~~a~Vl~i~~------- 523 (902)
T TIGR03683 462 AEVEIPDNFYSIVAERHEKEEKEEEL-P-----KDYE--ERA--KDLPETR-RLFYEDPTMREFEAKVLGVFD------- 523 (902)
T ss_pred CcccCCccHHHHHHHHHHHHHhcccc-c-----cchh--HHH--hcCCCce-EeccccCccceEEEEEEEEEc-------
Confidence 999998 9999999999998764211 0 1111 112 2467886 77776 55899999999973
Q ss_pred ecCCCeEEEEecceEEEEeeCCeeeccceeecccceEEEEeEEEeCCEEEEEEeeccCCCcCCCCCeEehh-------hH
Q 001932 562 VVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICK-------LI 634 (995)
Q Consensus 562 ~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~ivH~~~~~~~~~~l~~G~~V~~~-------~~ 634 (995)
.+|+||+|+|||||||||+|+|+|..+++.++|.+|++.+|.|+|.+. . +.+++|++|.+. ++
T Consensus 524 ------~~vvLd~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~--~--~~l~~G~~V~~~VD~~rR~~~ 593 (902)
T TIGR03683 524 ------NYVVLDQTAFYPEGGGQPADTGYLITNGGKIRVVDVQKVGGVIVHKVD--G--EGIKEGDEVKGEIDWERRLRL 593 (902)
T ss_pred ------CEEEEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeC--C--CCCCCCCEEEEEECHHHHHHH
Confidence 269999999999999999999999887778999999999999999986 2 448899999998 99
Q ss_pred hhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhccc
Q 001932 635 APNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCIN 714 (995)
Q Consensus 635 m~~HTAtHLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~ 714 (995)
|++|||||||++|++++||.|++|+||+++++++||||+|++++|++++.+||+.||++|++|+||++.+++++||++..
T Consensus 594 m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~ 673 (902)
T TIGR03683 594 MRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKY 673 (902)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcC
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999986
Q ss_pred Cchhhc-CccCCCCEEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeeccCCeeEEEEEechH
Q 001932 715 GLRAVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGL 793 (995)
Q Consensus 715 g~~~~f-~e~y~d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~ 793 (995)
+++.+. +++|++.||||+|+ ++|.++||||||.|||+||.|+|++++++++|++||+|+||.+
T Consensus 674 ~~~l~~~~~~~~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeIG~~kI~~~~~i~~Gv~RIe~v~G~~ 737 (902)
T TIGR03683 674 GFRLYQGGVPPGREIRVVEIE----------------DWDVQACGGTHCRNTGEIGPIKILKTERIQDGVERIEFAAGEA 737 (902)
T ss_pred chhhhccCCCCCCeEEEEEEC----------------CeeeeCCCCCCccchhcCceEEEEEEEEecCCeEEEEEEEChH
Confidence 655444 34677999999998 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhhhcCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001932 794 AYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVA 873 (995)
Q Consensus 794 A~~~~~~~~~~~~~l~~~~~~~~~~i~k~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~e~k~l~kel~~l~~~~a~~~a 873 (995)
|++++++.++.++++++++++ ++.++.++++++++++++++|++.+++.+++...+
T Consensus 738 A~~~~~~~~~~l~~~a~~L~~------------------------~~~~l~~~v~~l~~e~k~l~k~l~~l~~~l~~~~~ 793 (902)
T TIGR03683 738 ALEYIQELEDLLRESSDILKV------------------------PPEQLPETVKRFFEEWKEQRKEIERLKKKLAELKI 793 (902)
T ss_pred HHHHHHHHHHHHHHHHHHhCC------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888887775 34578888999999999999999999999988888
Q ss_pred HHHHHHhh-cCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEeeCCCCeEEEEEecCCCcccccCCCHHHHHHH
Q 001932 874 TETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTA 952 (995)
Q Consensus 874 ~~l~~~~~-~~~~~~iv~~~~~~~d~~~L~~~a~~l~~~~~~~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~A~~l~k~ 952 (995)
+.+..... .++.++++..+ +.|++.|+.+++.+++. + .++++++. .++++.+++++++++ +++|++|+++
T Consensus 794 ~~l~~~~~~i~g~~vi~~~~--~~d~~~lr~la~~l~~~-~-~vvvl~~~-~~~k~~~v~~~~~~~----~~~A~~lvk~ 864 (902)
T TIGR03683 794 YELISEAERIGGVEVIVELV--DADMDELQEIAEKLAEK-G-LVVVLVSG-GGGNGRVVISSGEKA----GVDAGELVRE 864 (902)
T ss_pred HHHHhhheecCCEEEEEEEe--CCCHHHHHHHHHHHhcC-C-cEEEEEEc-cCCcEEEEEEEChhH----hhhHHHHHHH
Confidence 88765543 46777777665 46899999999999765 3 44455443 346666777766543 6899999999
Q ss_pred HhhccCCCCCCCCCCCcccccCCcCCHHHHHHHHHHHH
Q 001932 953 ALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFA 990 (995)
Q Consensus 953 v~~~lgGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~~~ 990 (995)
+++.+||||| |+|++|||+|++++++++|++.+.+++
T Consensus 865 l~~~lgGkGG-Gk~~~AQGgg~~~~~l~~al~~~~~~l 901 (902)
T TIGR03683 865 IAKELGGGGG-GKPDLAQGGGPDDLKIDEALEKIKSFL 901 (902)
T ss_pred HHHhcCCCcC-CchhheeecCCCHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999998876
No 7
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.9e-202 Score=1838.92 Aligned_cols=793 Identities=27% Similarity=0.453 Sum_probs=710.9
Q ss_pred CcCCCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccc-CCCCCCCccccccccccccccccc
Q 001932 53 PQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRA 131 (995)
Q Consensus 53 ~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~f~-G~~~p~~~~~~~~r~~~~QkCiR~ 131 (995)
+..++||++|||++||+||++|||++||||||||+||++||||||||+||||||+ |.++|+ ++|+|+||||||+
T Consensus 54 ~~~~~~~~~eiR~~Fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp-----~~~~~~sQ~CiR~ 128 (900)
T PRK13902 54 IFSKKYTLKEMREKFLSFFEKHGHTRIERYPVVARWRDDVYLTIASIYDFQPWVTSGLVPPP-----ANPLVISQPCIRL 128 (900)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCCCEEcCCcCcCCCCCCCeeeeecchhhhhHHhcCCCCCCC-----CCCceecccccch
Confidence 4456699999999999999999999999999999999999999999999999998 999886 4799999999999
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHH
Q 001932 132 GGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEAR 206 (995)
Q Consensus 132 gGkhnDl~~VG~t~rH~TfFEMlGn~Sfg-----dYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~ 206 (995)
|||||||+|+||||||||||||||| ||||+|||+|||||||++|||||+|| |+
T Consensus 129 ----nDldnVG~t~rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~e~lt~~lgi~~~~I--~~---------------- 186 (900)
T PRK13902 129 ----NDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEFFTKELGIDPEEI--TF---------------- 186 (900)
T ss_pred ----hhhhhccccCCchhhhhhccceeeCCCCcccccHHHHHHHHHHHHHhhcCCCHHHe--ee----------------
Confidence 8999999999999999999999999 99999999999999999999999998 32
Q ss_pred HHHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccccCCCCccccCC
Q 001932 207 DIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLP 286 (995)
Q Consensus 207 ~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~Lp 286 (995)
+||||+|| ||||||||||| + | |||||||||||+++ +|+|+|||
T Consensus 187 -----------------~enfW~~G--GpcGPcsEi~~-~--g--------------lEiwnlVFmqy~~~-~g~~~~Lp 229 (900)
T PRK13902 187 -----------------KESWWEGG--GNAGPCFEVLV-R--G--------------LELATLVFMQYKKD-GNRYVEMP 229 (900)
T ss_pred -----------------cccccCCC--CCCCCceeeee-C--C--------------EEeeeeeeeEEEcC-CCeeeeCC
Confidence 69999999 99999999999 2 2 99999999999998 89999999
Q ss_pred CCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCccccc------------
Q 001932 287 AKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDADKV------------ 343 (995)
Q Consensus 287 ~~~IDTGmGlERl~~vlqg~~snydtDlf~pli~~i~~~~~~~-----------~y~g~~~~~~~~~~------------ 343 (995)
+||||||||||||+||+||+|||||| +|.|||+.|++++|++ +|+|.++.++.+.+
T Consensus 230 ~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 308 (900)
T PRK13902 230 LKIVDTGYGLERIAWASQGTPTAYDA-IFGELVDKLKENAGVEEPDEEILAEAARLAGLMDIEEIEDLRSLRQKVAKKLG 308 (900)
T ss_pred CCeeeCCcCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhcccCCcccchhHHHHHHHHHhhcc
Confidence 99999999999999999999999999 9999999999999974 36666664332211
Q ss_pred ------------cchhhhhhhhhhhheeeecCCCccCCCCcchHHHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcc
Q 001932 344 ------------DMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGD 411 (995)
Q Consensus 344 ------------~~~~rviaDH~R~~~f~i~DG~~Psn~grgYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~ 411 (995)
..++|+||||+||++|||+||++|||+|||||||||||||+|++ +.||++.| |++||+.+++.|++
T Consensus 309 ~~~~~~~~~~~~~~~~~vIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~~~~~~~~ 386 (900)
T PRK13902 309 IDVEELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTLRLL-DELGLDVP-LSELVDMQIDELKE 386 (900)
T ss_pred cchhhhhhhccccceEEEEecHHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHHHHHHHHHHhh
Confidence 15789999999999999999999999999999999999999999 57999999 99999999999999
Q ss_pred cChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHhhccCCCChHHHHHHHHHcCceeCh-h
Q 001932 412 VFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDI-E 490 (995)
Q Consensus 412 ~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~~l~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~-~ 490 (995)
.||||.++++.|++||..||++|.+||++|.++|++.+++. +.|||++||+||||||||+|||++||+|+|++||+ +
T Consensus 387 ~ypel~~~~~~I~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~--~~l~g~~~f~LYDt~G~P~dl~~eia~e~g~~vd~p~ 464 (900)
T PRK13902 387 DYPELKENRDYILDIVDLEEEKYRETLERGKRIVERLAKKK--EEIPLDDLIELYDSHGIPPEIVKEIAKKKGVEVEVPD 464 (900)
T ss_pred hChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHhhhhhcCCCCHHHHHHHHHHcCCccCchh
Confidence 99999999999999999999999999999999999999875 67999999999999999999999999999999999 8
Q ss_pred hHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccccc--cceeeeEEEEEEEeCCeeeeeecCCCeE
Q 001932 491 GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEFIESVVPGNEV 568 (995)
Q Consensus 491 ~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~y~--y~~~~~a~Vl~i~~~~~~v~~~~~~~~~ 568 (995)
+|+++|++|+++|++..+. . .. .. ..+ .++|+|+ +.+|+ |..+++|+|+++.. .
T Consensus 465 ~F~~~~~~~~~~~~~~~~~-~-----~~-~~-~~~--~~~~~T~-~l~y~~~~~~~~~a~Vl~i~~-------------~ 520 (900)
T PRK13902 465 NFYSLVAERHEKAEEEEEE-P-----VV-EE-ERL--KDLPETE-KLFYEDPYMREFEAKVLGVID-------------N 520 (900)
T ss_pred hHHHHHHHHHHHHhhcccc-c-----cc-hh-hHh--hcCCCce-EeccccCccceEEEEEEEEEc-------------C
Confidence 9999999999998763111 0 00 00 111 2567886 77776 55899999999973 2
Q ss_pred EEEecceEEEEeeCCeeeccceeecccceEEEEeEEEeCCEEEEEEeeccCCCcCCCCCeEehh-------hHhhhchHH
Q 001932 569 GIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICK-------LIAPNHTCT 641 (995)
Q Consensus 569 ~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~ivH~~~~~~~~~~l~~G~~V~~~-------~~m~~HTAt 641 (995)
+|+||+|+|||||||||+|+|+|..++..++|++|++.+|.|+|.+.. +.+.+|++|.++ ++|++|||+
T Consensus 521 ~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~----~~~~~G~~V~~~VD~~rR~~~mr~HTAt 596 (900)
T PRK13902 521 YVVLDQTAFYPEGGGQPADTGVLIVDGKGYKVVDVQKVGGVIVHVLEG----EPPKKGDEVRGEIDWERRYRLMRHHTAT 596 (900)
T ss_pred EEEEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeCC----CCCCCCCEEEEEECHHHHHHHHHHHHHH
Confidence 799999999999999999999998777789999999999999999852 445569999998 999999999
Q ss_pred HHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhcccCchhhc-
Q 001932 642 HMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF- 720 (995)
Q Consensus 642 HLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~~~~f- 720 (995)
|||++|++++||.|++|+||+++++++||||+|++++|++++.+||+.||++|++|+||++.+++++||++..+++.++
T Consensus 597 HLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~ 676 (900)
T PRK13902 597 HIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKRITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYGFRLYQG 676 (900)
T ss_pred HHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCHHHHHhccchhhhcc
Confidence 9999999999999999999999999999999998899999999999999999999999999999999999986665554
Q ss_pred CccCCCCEEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeeccCCeeEEEEEechHHHHHHHH
Q 001932 721 GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEA 800 (995)
Q Consensus 721 ~e~y~d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~ 800 (995)
+++|++.||||+|+ ++|.++||||||.|||+||.|+|++++++++|++||+|+||.+|++++++
T Consensus 677 g~~~~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeIG~~kI~~~e~i~~Gv~RIe~v~G~~A~~~~~~ 740 (900)
T PRK13902 677 GVPPGKTIRVVEIG----------------DWDVEACGGTHVSNTGEIGPIKILKTERIQDGVERLEFAAGDAAVEYIQE 740 (900)
T ss_pred CCCCCCeEEEEEEC----------------CeeeeCCCCCCcCcHhhCeeEEEEEEEEecCCeEEEEEEEChHHHHHHHH
Confidence 35788999999998 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHhhhcCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001932 801 ACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAA 880 (995)
Q Consensus 801 ~~~~~~~l~~~~~~~~~~i~k~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~e~k~l~kel~~l~~~~a~~~a~~l~~~~ 880 (995)
.++.++++++++++ +++++.++++++++++++++|++.+++.+++...++.+..++
T Consensus 741 ~~~~l~~~a~~L~~------------------------~~~el~~~v~kl~ee~k~l~kei~~l~~~l~~~~~~~l~~~~ 796 (900)
T PRK13902 741 LEDLLKEAAEILGV------------------------PPEQLPKTVERFFEEWKEQKKEIEKLRKELAELLASELLSKA 796 (900)
T ss_pred HHHHHHHHHHHhCC------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 98888888887765 456788899999999999999999999999888888876654
Q ss_pred h-cCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEeeCCCCeEEEEEecCCCcccccCCCHHHHHHHHhhccCC
Q 001932 881 A-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKG 959 (995)
Q Consensus 881 ~-~~~~~~iv~~~~~~~d~~~L~~~a~~l~~~~~~~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~A~~l~k~v~~~lgG 959 (995)
. .++.++++..+ +.|++.|+.+++.+++... .+++++ . +++..+++++++++ .++|++|++++++.+||
T Consensus 797 ~~~~g~~~i~~~~--~~d~~~Lr~~a~~l~~~~~-~vvl~~-~--~~k~~~v~~~~~~~----~~~a~~lvk~l~~~~gG 866 (900)
T PRK13902 797 EEVGGVKVVVEEV--DADEDELRKIANELAKEGK-VALVVL-G--NGGGQIVVGVGEDV----GVNAGEIVRELAKVLGG 866 (900)
T ss_pred eEeCCEEEEEEEe--CCCHHHHHHHHHHHHhcCC-eEEEEE-c--CCcEEEEEEEChhh----hhhHHHHHHHHHHhcCC
Confidence 4 46777777666 4689999999999988643 344444 2 35666777777654 38999999999999999
Q ss_pred CCCCCCCCCcccccCCcCCHHHHHHHHHHHHHhh
Q 001932 960 RCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMK 993 (995)
Q Consensus 960 kGG~Gk~~~AQG~g~~~~~l~~al~~a~~~~~~~ 993 (995)
||| |+|++|||+|++++++++|++.+.+++++.
T Consensus 867 kGG-Gk~~~AQGgg~~~~~l~~al~~~~~~l~~~ 899 (900)
T PRK13902 867 KGG-GKPDLAQGGGPDPKKKEEALEAAKEVLKEA 899 (900)
T ss_pred CCC-CchHheeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 999 999999999999999999999999998764
No 8
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.4e-191 Score=1663.87 Aligned_cols=583 Identities=41% Similarity=0.731 Sum_probs=544.4
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCcccccccccccccccccCCCCCC
Q 001932 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (995)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~~~~~~~~r~~~~QkCiR~gGkhnD 137 (995)
||++|||++||+||++|||+++|||||||+||||||||||||+||||||+|.++|+ ++|+||||||||+ ||
T Consensus 1 ~~~~eiR~~fl~FF~~kgH~~~~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----~D 71 (594)
T PRK01584 1 MTLDELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPS-----GTRLVDVQKCLRT----GD 71 (594)
T ss_pred CCHHHHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cc
Confidence 78999999999999999999999999999999999999999999999999999886 4899999999999 79
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhc--cCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh-CC
Q 001932 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKV--YRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LP 214 (995)
Q Consensus 138 l~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~--l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~-~~ 214 (995)
||||| |+|||||||||||||||||||+|||+|||||||++ |||||+|||||||+||++ +|+|+||++||+++ ||
T Consensus 72 le~VG-~~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~~~l~l~~~rl~vTv~~~~~~--~~~D~Ea~~iW~~~g~~ 148 (594)
T PRK01584 72 IDEVG-DLSHLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNIPKDKLYVTVFEGDEE--IPRDEETASVWESLGIP 148 (594)
T ss_pred ccccC-CCcchhHHHhhccccHhhhhHHHHHHHHHHHhccchhcCCCHHHeEEEEeCCCCC--CCCCHHHHHHHHHcCCC
Confidence 99999 89999999999999999999999999999999998 999999999999999885 89999999999999 99
Q ss_pred CCCcccCCCCCCcc-cCCCCCCCcCceeeEeecCCCCCCC--CCCCCCCCCeeEEeeeeccccccCCCCccccCCCCccc
Q 001932 215 ASRVLPFGCKDNFW-EMGDTGPCGPCSEIHYDRTGNRDAA--SLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVD 291 (995)
Q Consensus 215 ~~~i~~~~~~dNfW-~mG~~GpcGPcsEi~yd~~~~~~~~--~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~Lp~~~ID 291 (995)
++||++++.+|||| +||++||||||||||||+|+. ++. +.++++|+|||||||||||||||++||+|+|||+||||
T Consensus 149 ~~rI~~~~~~dNfW~~~G~~GPCGPcsEI~~d~g~~-~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~ID 227 (594)
T PRK01584 149 KDRIFYLSREHNWWGPVGETGPCGPDTEIFVDTGKP-KCSVNCRPTCSCGKYFEIWNNVFMQYNKDEDGNYEELKRKCVD 227 (594)
T ss_pred HHHeeeCCCCCCcccccCCCcCCCCceEEEEecCCc-ccccccCCCCCCCceEEEeeeeeeeeeecCCCccccCCCCcee
Confidence 99999999999999 799999999999999999753 221 23456889999999999999999999999999999999
Q ss_pred cCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhheeeecC--CCccCC
Q 001932 292 TGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIAD--GSCPGN 369 (995)
Q Consensus 292 TGmGlERl~~vlqg~~snydtDlf~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~f~i~D--G~~Psn 369 (995)
||||||||+|||||++||||||+|.|||++|++++|+ +|.. . +..|.||||||||+||++|||+| |++|||
T Consensus 228 TGmGLERl~~vlqg~~s~ydtdlf~pii~~i~~~~~~-~y~~----~--~~~~~a~rvIaDH~R~~~f~i~D~~Gv~PsN 300 (594)
T PRK01584 228 TGMGIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGK-IYGQ----N--EEDDRSIRIIADHIRAACFILGDPFVVLPSN 300 (594)
T ss_pred CCcCHHHHHHHHcCCCCccchhhhHHHHHHHHHHhCC-CcCC----C--CCCceeEEEEecHHHHHHHHhhcccCCCCCC
Confidence 9999999999999999999999999999999999997 4731 1 23468999999999999999999 999999
Q ss_pred CCcchHHHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001932 370 EGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAA 449 (995)
Q Consensus 370 ~grgYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~ 449 (995)
+|||||||||||||+|+| ++||++.+||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++.+
T Consensus 301 ~grGYvlRrilRRa~r~~-~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~~i 379 (594)
T PRK01584 301 VGQGYVLRRLIRRSIRHA-KKLGIESHFLADLVDSVEEIYGSFYPELTEKKDFIKEELNKEEEKFFKTLRKGEQEFIKLI 379 (594)
T ss_pred CCCchHHHHHHHHHHHHH-HHhCCCchhHHHHHHHHHHHHhhhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc-CCCCChHHHHHhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhc
Q 001932 450 QDVQ-GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKR 528 (995)
Q Consensus 450 ~~~~-~~~l~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (995)
++++ +++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++ +
T Consensus 380 ~~~~~~~~~~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~~~~~-~-------------------- 438 (594)
T PRK01584 380 PNLGSSKIIPGDIAFKLYDTYGFPYEITEELASEYGFTVDREGFDEHFKKHQKVSKKG-A-------------------- 438 (594)
T ss_pred HHhccCCccCHHHHHhhhccCCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHhhc-c--------------------
Confidence 8875 56899999999999999999999999999999999999999999999887631 0
Q ss_pred CCCCcccccccccceeeeEEEEEEEeCCeeeeeecCCCeEEEEecceEEEEeeCCeeeccceeecccceEEEEeEEEeCC
Q 001932 529 GVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGG 608 (995)
Q Consensus 529 ~~~~t~~~~~y~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g 608 (995)
.. +|. ||++|+|+
T Consensus 439 ---~~-~f~---------------------------------------------g~~~d~g~------------------ 451 (594)
T PRK01584 439 ---DK-VFK---------------------------------------------GGLADHSY------------------ 451 (594)
T ss_pred ---cc-ccc---------------------------------------------CCcCcccc------------------
Confidence 00 011 24666654
Q ss_pred EEEEEEeeccCCCcCCCCCeEehhhHhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHH
Q 001932 609 FVIHIGSLTEGAGRFSVGEEVICKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIES 688 (995)
Q Consensus 609 ~ivH~~~~~~~~~~l~~G~~V~~~~~m~~HTAtHLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~ 688 (995)
.+|++|||+|||++|++++||.++.|+||++.++++||||++++++|++++++||+
T Consensus 452 ------------------------~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~it~edL~~IE~ 507 (594)
T PRK01584 452 ------------------------ETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDEIKKVED 507 (594)
T ss_pred ------------------------cHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCCCCCCHHHHHHHHH
Confidence 36999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHccCCeEEEEcCHHHHhcccCchhhcCccCCCCEEEEEeCCcccccccCCCCccccceeeeeccCCCccccccc
Q 001932 689 IVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREA 768 (995)
Q Consensus 689 ~~NeiI~~nlpV~~~~~~~eEA~~~~g~~~~f~e~y~d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeI 768 (995)
.||++|++|+||++.+++++||++. +.+++|+++|++.||||+|+ ++|.++||||||+|||+|
T Consensus 508 ~vNeiI~~n~pV~~~~~s~eEA~~~-~~~~lf~e~y~~~VRVV~Ig----------------d~d~elCGGTHV~nTgeI 570 (594)
T PRK01584 508 IVNLQIKNDLSVKKEVMSLEEAREK-GAMALFGEKYEDIVKVYEID----------------GFSKEVCGGPHVENTGEL 570 (594)
T ss_pred HHHHHHHhCCCeEEEEcCHHHHHhc-chhhhccccCCCcEEEEEEC----------------CeeeeCCCCCCCCCcccC
Confidence 9999999999999999999999996 67788888899999999998 689999999999999999
Q ss_pred ccEEEEeeeeccCCeeEEEEEe
Q 001932 769 EAFALLSEEGIAKGIRRITAVT 790 (995)
Q Consensus 769 g~fkI~~~~~~~~G~~RI~~vt 790 (995)
|.|+|++++++++|++||+++.
T Consensus 571 G~fkI~s~~s~g~GvrRI~av~ 592 (594)
T PRK01584 571 GTFKIQKEQSSSSGVRRIRAIL 592 (594)
T ss_pred ceEEEEecccccCCeEEEEEEe
Confidence 9999999999999999999984
No 9
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=100.00 E-value=1.7e-171 Score=1510.72 Aligned_cols=540 Identities=54% Similarity=0.925 Sum_probs=450.7
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCC-CCCCcccccccccccccccccCCCCCCCCC
Q 001932 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTA-DPNTQLSKLTRACNTQKCIRAGGKHNDLDD 140 (995)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~f~G~~-~p~~~~~~~~r~~~~QkCiR~gGkhnDl~~ 140 (995)
|||++||+||++|||++||||||||+||||||||||||+||||||+|.. +|+ ++|+|+||||||+|||||||||
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~~lvp~~d~~llf~~Agm~~fkp~f~g~~~~p~-----~~r~~~~Q~CiR~~GkhnDld~ 75 (552)
T PF01411_consen 1 EIREKFLDFFEKKGHTIVPSSSLVPRWDPTLLFTNAGMNQFKPYFLGGEVPPP-----ANRLVSSQKCIRTGGKHNDLDN 75 (552)
T ss_dssp HHHHHHHHHHHTTT-EEE----SS-TT-TTBSS--SGGGGGCCCCTTSSS--S-----SSCEEEEEEEE-EETTEECGGG
T ss_pred CHHHHHHHHHHHCCCEEeccCCcccCCCCCceeeHhhHHHHHHHhcCCCCCCC-----CCcccccceeeccCCCcchhhh
Confidence 7999999999999999999999999999999999999999999999998 554 5899999999999999999999
Q ss_pred CCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh--CCCCCc
Q 001932 141 VGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRV 218 (995)
Q Consensus 141 VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~--~~~~~i 218 (995)
||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||.+ |+||++||+++ +|++||
T Consensus 76 VG~t~rH~T~FEMlGn~sfgdYfK~eai~~awe~lt~~l~i~~~~l~vt~~~~--------d~ea~~~w~~~~g~~~~~i 147 (552)
T PF01411_consen 76 VGRTGRHHTFFEMLGNFSFGDYFKEEAIEYAWEFLTEVLGIPPDRLYVTVFEW--------DGEAGEIWEKIVGGPEERI 147 (552)
T ss_dssp TTTSSS--SEEEEEEEEEECSS-HHHHHHHHHHHHHCTTT--GGGEEEEEECC--------ECCCCCCCCECCTTECCCE
T ss_pred cCCCceEeeehhhccccccccccHHHHHHHHHHHHHhhcCCChHhEEEEEeCC--------chhHHHHHHHhcCCCHHHe
Confidence 99999999999999999999999999999999999999999999999999986 56999999999 999999
Q ss_pred ccCCCCCCcccCCCCCCCcCceeeEeecCCCCC---CCCCCCCCCCCeeEEeeeeccccccCCCCccccCCCCccccCch
Q 001932 219 LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRD---AASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (995)
Q Consensus 219 ~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~---~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDTGmG 295 (995)
++||.+||||+||++||||||||||||+|..+. ..+.++++++||+||||+|||||++++||+++|||+++||||||
T Consensus 148 ~~~~~~~nfw~~g~~gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~~~~eiwn~vf~q~~~~~~g~~~~L~~~~idtGmg 227 (552)
T PF01411_consen 148 LVFGKKDNFWEMGDTGPCGPCSEIFYDRGEERGCWDSQGTPTCDDDRFLEIWNLVFMQYNRDEDGSLEPLPKKNIDTGMG 227 (552)
T ss_dssp EEE-CCEEEEESSTSEEEEEEEEEEEEEECCCHHHHHHSTSSHHHHHECCCCCCCCCEEEETTTSHCCCCCCCCCCCCEE
T ss_pred EecCCCCceEECCCCCCCCCCEEEEECCCcccCccccccccccccccHHHHHHHHHHHhccccccccccccchhhhcCCC
Confidence 999999999999999999999999999976543 34667789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhheeeecCCCccCCCCcchH
Q 001932 296 FERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (995)
Q Consensus 296 lERl~~vlqg~~snydtDlf~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~f~i~DG~~Psn~grgYv 375 (995)
|||++++|||++||||||+|.|+++.|+++++. +|. +....++|+|+||||+||++|||+||++|||+|||||
T Consensus 228 ler~~~~lq~~~s~~~tdlf~~i~~~i~~~~~~-~y~------~~~~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~GrGYv 300 (552)
T PF01411_consen 228 LERLAAVLQGVRSNYDTDLFMPIIEAIEELSGV-PYK------DEEEIDVALRVIADHIRALTFAIADGVLPSNEGRGYV 300 (552)
T ss_dssp HHHHCHHHCCHCCHHHCHHTCHHHHHHHHHHC---TT------SSCCCHHHHHHHHHHHHHHHHHHHTT--SSSSHHHHH
T ss_pred cHHHHHHHhhhhhhhchhhhhhHHHHHHHHcCC-Ccc------cccccccEEEEEcchhhceeeEecCCeeecccCCcch
Confidence 999999999999999999999999999999998 672 2345688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C
Q 001932 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-G 454 (995)
Q Consensus 376 lRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~-~ 454 (995)
||||||||+|++ ++||++.+||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++.+++++ +
T Consensus 301 lRriiRRa~r~~-~~lg~~~~fl~~lv~~vi~~~~~~ypel~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~ 379 (552)
T PF01411_consen 301 LRRIIRRAVRFG-RKLGIEEPFLYELVPVVIESMGDFYPELKENKDYIKDIIKEEEERFLKTLERGLKLLEKLIKKLKKK 379 (552)
T ss_dssp HHHHHHHHHHHH-HHTT-SS--HHHHHHHHHHHHTTTGTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH-HHhCCCccchHHHHHHHHHHhhccChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999 68999999999999999999999999999999999999999999999999999999999999987 7
Q ss_pred CCCChHHHHHhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcc
Q 001932 455 KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATD 534 (995)
Q Consensus 455 ~~l~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~ 534 (995)
++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++.... ...+.. .+ ..++.++
T Consensus 380 ~~lsge~aF~LYDTyGfP~Dlt~eia~e~gl~vD~~~f~~~m~~qr~~sr~~~~~~~~--~~~~~~---~~--~~l~~~t 452 (552)
T PF01411_consen 380 KELSGEDAFKLYDTYGFPLDLTEEIAEEKGLSVDEEGFEYAMEEQRERSRAAKKKKSS--IEEDVS---AL--AELPKTT 452 (552)
T ss_dssp SEE-HHHHHHHHHHH---HHHHHHHHHTTT-EE-HHCCHHHHHHHCHHHCCHH----------SSS---TT--TTCHHHE
T ss_pred cCCChHHheeehhccCCCHHHHHHHHHHhceeecHHHHHHHHHHHHHHhhhccccccc--hhhhHH---HH--hhhhccc
Confidence 8999999999999999999999999999999999999999999999999877543320 011111 11 1345556
Q ss_pred cccccccceeeeEEEEEEEeCCeeeeeecCCCeEEEEecceEEEEeeCCeeeccceeecccceEEEEeEEEeCCEEEEEE
Q 001932 535 DSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIG 614 (995)
Q Consensus 535 ~~~~y~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~ivH~~ 614 (995)
+|.||+ ..+++|+|++++.+++++.++.+++..+||||+|+||||+|||++|+|+|..++..++|.+|++.+|+++|.+
T Consensus 453 eF~gYe-~~~~~akVlal~~~~~~~~~v~~~~~~~VVLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~ 531 (552)
T PF01411_consen 453 EFVGYE-YLECEAKVLALFKDGEFVAKVEEGEEGYVVLDKTPFYPEGGGQPGDTGTIIGDGGEFEVTDVQKVGGVILHIG 531 (552)
T ss_dssp ETCCCC-------TT---TT--EEEEEEEEEETTEEEESEE-S--SBTTB----EEECCTTEEEEEEEEEEETTEEEEEE
T ss_pred ccceee-cccccceEEEEEeCCEEEeeecCCceEEEEECCccccCCCCCCCCCeEEEeecceEEEEEEEEEECCEEEEEE
Confidence 799999 6689999999999888888888888889999999999999999999999999889999999999999999999
Q ss_pred eeccCCCcCCCCCeEehh
Q 001932 615 SLTEGAGRFSVGEEVICK 632 (995)
Q Consensus 615 ~~~~~~~~l~~G~~V~~~ 632 (995)
.... +.+++|+.|.++
T Consensus 532 ~~~~--g~l~~G~~V~~~ 547 (552)
T PF01411_consen 532 EVES--GSLKVGDEVTAE 547 (552)
T ss_dssp SSG---GG--TTSEEEEE
T ss_pred eccC--CCCCCCCEEEEE
Confidence 8765 789999999976
No 10
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=100.00 E-value=2.4e-108 Score=855.03 Aligned_cols=230 Identities=63% Similarity=1.115 Sum_probs=222.0
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCcccccccccccccccccCCCCCCCC
Q 001932 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLD 139 (995)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~~~~~~~~r~~~~QkCiR~gGkhnDl~ 139 (995)
++|||++||+||++|||+++|||||||++|||||||||||+||||||+|.++|+ ++|+|+||||||+ ||||
T Consensus 1 ~~eiR~~fl~FF~~kgH~~v~s~slvp~dDptllFtnAGM~~Fkp~f~G~~~p~-----~~r~~~~QkCiR~----~Die 71 (232)
T cd00673 1 ASEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPP-----ANRLVNSQKCIRA----GDID 71 (232)
T ss_pred ChHHHHHHHHHHHhCCCEEeCCCCcCCCCCCchheeccchhhhhHHhcCCCCCC-----CCceeeeeeceec----CChh
Confidence 479999999999999999999999999999999999999999999999999886 5899999999999 7999
Q ss_pred CCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh--CCCCC
Q 001932 140 DVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASR 217 (995)
Q Consensus 140 ~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~--~~~~~ 217 (995)
|||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||++ |+||++||.+. +|++|
T Consensus 72 nVG~t~rHhTfFEMLGNfSFgdYFK~eaI~~awe~LT~~l~l~~~rl~vTv~~~--------dde~~~~w~~~~g~~~~~ 143 (232)
T cd00673 72 NVGKTGRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVFEG--------DDEEEAIWWWKIGLPGIR 143 (232)
T ss_pred hccccccchhhhhhhcccchhhhhHHHHHHHHHHHHHhhcCCCccceEEEEeCC--------CHHHHHHHHHhhCCCHHH
Confidence 999999999999999999999999999999999999999999999999999974 89999999988 99999
Q ss_pred cccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccccCCCCccccCCCCccccCchHH
Q 001932 218 VLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (995)
Q Consensus 218 i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDTGmGlE 297 (995)
|++++.+||||+||++||||||||||||++++.++...+++||+|||||||||||||+|+++|+|.|||+||||||||||
T Consensus 144 i~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~r~lEIWNlVFmqy~r~~~g~l~pLp~k~IDTGmGlE 223 (232)
T cd00673 144 IERIGFKDNFWEMGGNGPCGPCSEIFYDRGEERDAASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLE 223 (232)
T ss_pred eeeCCccCCCCCCCCCcCCCCCEEEEEccCCCcCccccccCCCCCEEEEeeeeeeeeeccCCCCCccCCCCeeeCCcCHH
Confidence 99999999999999999999999999999877766667889999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q 001932 298 RLTSILQNK 306 (995)
Q Consensus 298 Rl~~vlqg~ 306 (995)
||+|||||+
T Consensus 224 Rla~vlQg~ 232 (232)
T cd00673 224 RLVWVLQGV 232 (232)
T ss_pred HHHHHHcCC
Confidence 999999996
No 11
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=100.00 E-value=2.6e-40 Score=351.16 Aligned_cols=220 Identities=28% Similarity=0.406 Sum_probs=200.4
Q ss_pred ccceeeeEEEEEEEeCCeeeeeecCCCeEEEEecceEEEEeeCCeeeccceeecccceEEEEeEEEeCCEEEEEEeeccC
Q 001932 540 IWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEG 619 (995)
Q Consensus 540 ~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~ivH~~~~~~~ 619 (995)
.|..+++|+|+.+..+ .|+||+|+|||++||||+|+|+|...++...|+++.+.++.|+|.+...
T Consensus 10 ~y~~e~~~~v~~v~~~-------------~i~ld~T~Fyp~~GGQp~D~G~l~~~~~~~~~~~~~~~~~~I~H~~~~~-- 74 (241)
T COG2872 10 SYLKEFEATVVDVEDN-------------EIVLDRTIFYPTGGGQPGDTGTLIWAGGEYVVEDVTKDGEEIVHVLAEH-- 74 (241)
T ss_pred cccccceEEEEEEeCC-------------eEEEEeccccCCCCCCcCCceEEEeCCceEEEEEEEecceEEEEEecCc--
Confidence 3788999999998742 6999999999999999999999999999999999999988999998632
Q ss_pred CCcCCCCCeEehh-------hHhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHH
Q 001932 620 AGRFSVGEEVICK-------LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNE 692 (995)
Q Consensus 620 ~~~l~~G~~V~~~-------~~m~~HTAtHLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~~Ne 692 (995)
..+.+|++|.++ +|||+|||+|||++++.+.++ .+..|+++++++.|+||+.+. +++.+.++++++|+
T Consensus 75 -~~~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~--~~~~g~~i~~d~~~iD~~~e~--~~~~~~~v~~~~ne 149 (241)
T COG2872 75 -AKLKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYG--ALTTGFEIGEDYARIDFDGED--TEDEIEEVEALANE 149 (241)
T ss_pred -ccCCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhcccc--ceeecceeccccccccccccc--chhhHHHHHHHHHH
Confidence 357899999998 999999999999999999998 467899999999999998653 89999999999999
Q ss_pred HHHccCCeEEEEcCHHHHhcccCchhhcCccCC---CCEEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccc
Q 001932 693 QIKAELDVFSKEATLAEAKCINGLRAVFGEVYP---DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAE 769 (995)
Q Consensus 693 iI~~nlpV~~~~~~~eEA~~~~g~~~~f~e~y~---d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg 769 (995)
+|.+|+||...+++++||.++|+++++-...++ ..+|+|+|+ ++|.++||||||+||+|||
T Consensus 150 ~v~~~~~v~~~~i~~EE~~~~p~~~~~~~~~~~~~~g~iRiV~I~----------------did~qpCgGtHVk~T~EIG 213 (241)
T COG2872 150 LVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIG----------------DIDVQPCGGTHVKNTGEIG 213 (241)
T ss_pred HHHcCCeeeeeecCHHHHhhCcChhhhcccCCccccceEEEEEEC----------------CeeccCCCCcccCCccceE
Confidence 999999999999999999999999887664333 479999999 6899999999999999999
Q ss_pred cEEEEeeeeccCCeeEEEEEechHHH
Q 001932 770 AFALLSEEGIAKGIRRITAVTTGLAY 795 (995)
Q Consensus 770 ~fkI~~~~~~~~G~~RI~~vtG~~A~ 795 (995)
.|+|++.++++++.+||+|.+|.++.
T Consensus 214 ~Iki~k~e~k~k~~~Rv~f~~~~~~~ 239 (241)
T COG2872 214 EIKILKTEKKGKGNRRVYFTLGERAS 239 (241)
T ss_pred EEEEEEEEEecCceEEEEEEeccccc
Confidence 99999999999999999999999875
No 12
>PLN02961 alanine-tRNA ligase
Probab=100.00 E-value=2.3e-39 Score=345.41 Aligned_cols=202 Identities=26% Similarity=0.367 Sum_probs=170.0
Q ss_pred eEEEEecceEEEEeeCCeeeccceeeccc--ceEEEEeEEEeCCEEEEEEeecc----CCCcCCCCCeEehh-------h
Q 001932 567 EVGIVLASSSFYAEQGGQIFDEGFIEGLF--GSFYVRNVQIYGGFVIHIGSLTE----GAGRFSVGEEVICK-------L 633 (995)
Q Consensus 567 ~~~vvLD~T~FYpegGGQ~~D~G~I~~~~--~~~~V~dv~~~~g~ivH~~~~~~----~~~~l~~G~~V~~~-------~ 633 (995)
.+.|+||+|+|||||||||+|+|+|...+ ..++|++|++.+|+++|.+.+.. +.+.|.+|++|.++ .
T Consensus 2 ~~~viLd~T~FYpegGGQp~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~rR~~ 81 (223)
T PLN02961 2 RIALVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESRRKL 81 (223)
T ss_pred CeEEEeCCceEcCCCCCCCCcEEEEEecCCCcEEEEEEEEEECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHHHhh
Confidence 36799999999999999999999997533 46999999999999999986431 01468899999998 9
Q ss_pred HhhhchHHHHHHHHHHHH-hCCccccccccccCCceEEEecCCCCCCHHHH----HHHHHHHHHHHHccCCeEEEEcCHH
Q 001932 634 IAPNHTCTHMLNFALREV-LGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHL----RRIESIVNEQIKAELDVFSKEATLA 708 (995)
Q Consensus 634 ~m~~HTAtHLL~aAlr~v-lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL----~~IE~~~NeiI~~nlpV~~~~~~~e 708 (995)
+|++|||+|||++|++++ +|.++.+.|+++ +++.++||. ..++.+++ .+||+++|++|++++||++.+++++
T Consensus 82 ~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~-~~~~~v~~~--~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~~~~~ 158 (223)
T PLN02961 82 HSRLHSAGHLLDVCMARVGLGPLEPGKGYHF-PDGPFVEYK--GKIPQGELDSKQDELEAEANELIAEGGKVSAAVLPYD 158 (223)
T ss_pred hhccCcHHHHHHHHHHHcCCCcccccccccc-CCccceeec--ccCCHHHHHhHHHHHHHHHHHHHHcCCceeEEEeCHH
Confidence 999999999999999998 787777888774 678888875 45776554 7999999999999999999999999
Q ss_pred HHhcccCchhhcCc-cCCCCEEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeeccCCeeEEE
Q 001932 709 EAKCINGLRAVFGE-VYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 787 (995)
Q Consensus 709 EA~~~~g~~~~f~e-~y~d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~ 787 (995)
||+++++ ++.+.. ...+.+|||+|+ +++.++||||||.||++||.|+|++.+. ++|.+||+
T Consensus 159 ea~~~~~-~~~~~~~~~~~~vRiV~I~----------------~~d~~~CgGTHv~nT~eig~i~I~~~~~-~kg~~Rv~ 220 (223)
T PLN02961 159 EAAELCG-GSLPDYIAKDSTPRIVKIG----------------DSPGCPCGGTHVADVSEITSVKVTQIRV-KKGVTRVS 220 (223)
T ss_pred HHHHhcC-CcCCCcCCCCCceEEEEEC----------------CCccCccCCcccCchhccccEEEEEEEe-cCCEEEEE
Confidence 9998743 222221 114789999998 5789999999999999999999999864 58999999
Q ss_pred EE
Q 001932 788 AV 789 (995)
Q Consensus 788 ~v 789 (995)
|.
T Consensus 221 ~~ 222 (223)
T PLN02961 221 YT 222 (223)
T ss_pred Ee
Confidence 85
No 13
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=325.15 Aligned_cols=359 Identities=21% Similarity=0.260 Sum_probs=281.6
Q ss_pred CeEEEEecceEEEEeeCCeeeccceeecccceEEEEeEEEeCCEEEEEEeeccCCCcCCCCCeEehh-------hHhhhc
Q 001932 566 NEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICK-------LIAPNH 638 (995)
Q Consensus 566 ~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~ivH~~~~~~~~~~l~~G~~V~~~-------~~m~~H 638 (995)
+.+.+.|.+|++||++||||+|.|++ ..++|..|.+.+-..-|.+. ..+.||.+|.+. +||++|
T Consensus 42 eg~~i~lqdtiLfpegggqp~d~gf~----~~v~V~~VsR~G~~A~H~~~-----~~iePGt~V~V~VD~qkR~D~MQQH 112 (415)
T KOG2105|consen 42 EGYEIELQDTILFPEGGGQPSDSGFL----KIVEVSHVSRFGLHAKHHVN-----DYIEPGTTVEVAVDEQKRMDYMQQH 112 (415)
T ss_pred ecceeeeeeeEeccCCCCCCCccccc----cceeEEEeeccccchhhccC-----CCCCCCCeEEEEecHHHHhHHHHHh
Confidence 46789999999999999999999999 35778888888766666654 679999999987 999999
Q ss_pred hHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHH--HhcccCc
Q 001932 639 TCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAE--AKCINGL 716 (995)
Q Consensus 639 TAtHLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~~NeiI~~nlpV~~~~~~~eE--A~~~~g~ 716 (995)
|++||+++++.++|.-. +..+.++.=..-++.+.+ ++|.|++..||+.+|+.|+.-+|+.+.+.+.++ ..+..|
T Consensus 113 sGQHLitAvad~~fKlk--TtSWelG~~~sa~e~~~~-~mTaeqvaaieqsvNe~I~d~~~~~v~E~sl~d~eVeqVS~- 188 (415)
T KOG2105|consen 113 SGQHLITAVADHLFKLK--TTSWELGRFRSAIELDTP-SMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVSG- 188 (415)
T ss_pred cchhHHHHHHHhhhccc--eeeeeccceeeccccCCC-CccHHHHHHHHHHHHHHHHhccchheeecccCCcchhhccC-
Confidence 99999999999998643 233333322233444443 799999999999999999999999999887754 344433
Q ss_pred hhhcCccCCCCEEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeeccCCeeEEEEEechHHHH
Q 001932 717 RAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYK 796 (995)
Q Consensus 717 ~~~f~e~y~d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~ 796 (995)
|.++. ...+++|+|.|+ ++|.++||||||+||++|+.|+|++.++..+|-+-+.|+.|.|++.
T Consensus 189 ~~~~D-~haG~iRvvnI~----------------~vDSN~CCGTHvs~~Sdl~vI~ILgtekg~k~rtN~~f~~GnRV~~ 251 (415)
T KOG2105|consen 189 RGLPD-DHAGPIRVVNIE----------------GVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLK 251 (415)
T ss_pred CCCcc-cccCceEEEeec----------------CccCCccccccccchhhcceEEEeeccccccCccceEEEeccHHHH
Confidence 22211 122589999999 6899999999999999999999999998888866788888999999
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHhhhcCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001932 797 AFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATET 876 (995)
Q Consensus 797 ~~~~~~~~~~~l~~~~~~~~~~i~k~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~e~k~l~kel~~l~~~~a~~~a~~l 876 (995)
+.+..+..++.+..+++| ..+++.+++.+++++.+.++|..+.+...+|.-.+.++
T Consensus 252 ~mersh~t~~a~taLLkC------------------------gaed~vEavkk~qnstk~LqKnn~~~lr~LA~~iahsL 307 (415)
T KOG2105|consen 252 WMERSHGTEKALTALLKC------------------------GAEDHVEAVKKLQNSTKILQKNNLNLLRDLAVHIAHSL 307 (415)
T ss_pred HHHHhcchHHHHHHHHhc------------------------chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 999999988888888887 34577889999999999999999999999998888888
Q ss_pred HHHhhcCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEeeCCC-CeEEEEEecCCCcccccCCCHHHHHHHHhh
Q 001932 877 AEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETT-NKAVVCAGVPEKSDQSKQLEVSEWLTAALQ 955 (995)
Q Consensus 877 ~~~~~~~~~~~iv~~~~~~~d~~~L~~~a~~l~~~~~~~v~ll~~~~~~-~k~~~~~~v~~~~~~~~~~~A~~l~k~v~~ 955 (995)
..+..-+|. ++.+.. ..+.+.+.-+++.+.. ..+++++...+++ |.++++++ |+ -....+...+++
T Consensus 308 ~Ns~d~gG~--vi~~~~-e~~sE~~N~ianei~s--~EtlL~~~~~dek~GgLflLa~-~~-------asvetLg~rvae 374 (415)
T KOG2105|consen 308 RNSPDWGGV--VILHRK-EGDSEFMNIIANEIGS--EETLLFLTVGDEKGGGLFLLAG-PP-------ASVETLGPRVAE 374 (415)
T ss_pred hcCcCcCce--EEeehh-hccHHHHHHHhhccCC--eeEEEEEEeeccCCceEEEecC-Cc-------hhhhhhhHHHHH
Confidence 765443442 333443 2478888877776643 2355555554433 44555444 22 235677889999
Q ss_pred ccCCCCCCCCCCCcccccCCcCCHHHHHHHHHHHHHh
Q 001932 956 PLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAM 992 (995)
Q Consensus 956 ~lgGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~~~~~ 992 (995)
.+.|||| |+....||+.++.++-.++.+++.+|+..
T Consensus 375 ~LeG~Ga-~K~Gr~QGKaTkmSrrmea~AlLqDYiS~ 410 (415)
T KOG2105|consen 375 VLEGKGA-GKKGRFQGKATKMSRRMEAQALLQDYIST 410 (415)
T ss_pred HhhcCCC-CcCcccccchhhhhHHHHHHHHHHHHhhc
Confidence 9999999 99999999999999999999999999864
No 14
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=2.2e-25 Score=271.73 Aligned_cols=235 Identities=19% Similarity=0.267 Sum_probs=197.4
Q ss_pred cceEEEEeeCCeeeccceeecccceEEEEeEEEeCCEEEEEEeeccCCCcCCCCCeEehhhHhhhchHHHHHHHHHHHHh
Q 001932 573 ASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKLIAPNHTCTHMLNFALREVL 652 (995)
Q Consensus 573 D~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~ivH~~~~~~~~~~l~~G~~V~~~~~m~~HTAtHLL~aAlr~vl 652 (995)
...+..+..+|++.|+.+.+.+++.+++++..+.+| ..+++||++|||.+|++++|
T Consensus 36 ~~~iv~a~vn~~l~dL~~~i~~d~~i~fv~~~~~~g------------------------~~iy~hS~~hlL~~A~~~~~ 91 (639)
T PRK12444 36 KKKAVAGKVNDKLYDLRRNLEEDAEVEIITIDSNEG------------------------VEIARHSAAHILAQAVKRLY 91 (639)
T ss_pred chheEEEEECCEEEEcCcccCCCCeEEEecCCChHH------------------------HHHHHHHHHHHHHHHHHHHc
Confidence 344556778999999999999999999999877664 68999999999999999999
Q ss_pred CCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhcccCch------hhcCccC-C
Q 001932 653 GDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLR------AVFGEVY-P 725 (995)
Q Consensus 653 g~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~~------~~f~e~y-~ 725 (995)
|......| +..++++||||+...++|++++.+||++||++|.+|+||+..+++++||.++..-. .++.... .
T Consensus 92 ~~~~~~i~-~~~~~g~y~d~~~~~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~F~~~~~~~K~~ll~~~~~~ 170 (639)
T PRK12444 92 GDVNLGVG-PVIENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLFQEMNDRLKLELLEAIPSG 170 (639)
T ss_pred CCcEEEeC-CcCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHhhcCCchHHHHHhcCCCC
Confidence 98655666 66799999999987789999999999999999999999999999999999862110 1111111 1
Q ss_pred CCEEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeec-------cCCeeEEEEEechHHHHHH
Q 001932 726 DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTTGLAYKAF 798 (995)
Q Consensus 726 d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G~~RI~~vtG~~A~~~~ 798 (995)
+.||+++++ + ..++|+||||+|||+|+.|+|+++++. +++++||+++| +...
T Consensus 171 ~~v~iy~~~----------------~-~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~~~~~l~Ri~g~a----~~~~ 229 (639)
T PRK12444 171 ESITLYKQG----------------E-FVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDSNNQVLQRIYGVA----FSSQ 229 (639)
T ss_pred CeEEEEEEC----------------C-EEEEcCCcCCCCCCCCceeEEEEEcceEEcCCCCCcceEEEEEEe----cCCH
Confidence 458898887 2 467899999999999999999998876 67999999995 5566
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHH--HHhhhcCCCccCCCChHHHHHHHHHHHHH
Q 001932 799 EAACSLEKEVDDASKIEGSLLEKTVA--SLKSKVDGAAIPAPKKADIRAKIALLQNQ 853 (995)
Q Consensus 799 ~~~~~~~~~l~~~~~~~~~~i~k~l~--~~~~~~~~~~~~~~~~~~l~~~l~~l~~e 853 (995)
++++++++.++++.+++|+++++++. .+.+.++|+.+|+|.+..+.+.|.++..+
T Consensus 230 ~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~ 286 (639)
T PRK12444 230 KELEEYLHFVEEAAKRNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAFLRE 286 (639)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHcCCcccccccCcceEEeeCHHHHHHHHHHHHHH
Confidence 67889999999999999999999977 56667899999999999999887777544
No 15
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.92 E-value=2.6e-24 Score=262.71 Aligned_cols=233 Identities=21% Similarity=0.282 Sum_probs=192.8
Q ss_pred eEEEEeeCCeeeccceeecccceEEEEeEEEeCCEEEEEEeeccCCCcCCCCCeEehhhHhhhchHHHHHHHHHHHHhCC
Q 001932 575 SSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKLIAPNHTCTHMLNFALREVLGD 654 (995)
Q Consensus 575 T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~ivH~~~~~~~~~~l~~G~~V~~~~~m~~HTAtHLL~aAlr~vlg~ 654 (995)
.+..+..+|++.|+.+.+.+++.+++++..+..| ..+++||++|||++|++++||.
T Consensus 34 ~~v~a~vng~l~dL~~~l~~d~~Vefi~~~~~~g------------------------~~~y~hS~~hll~~A~~~~~~~ 89 (638)
T PRK00413 34 AAVAGKVNGELVDLSTPIEEDASLEIITAKDEEG------------------------LEIIRHSAAHLLAQAVKRLYPD 89 (638)
T ss_pred heEEEEECCEEeeCCccccCCCceeeeeccchhh------------------------HHHHhhhHHHHHHHHHHHHcCC
Confidence 4456677999999999999899999998777654 6899999999999999999986
Q ss_pred ccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhcccCc------hhhcCccCC-CC
Q 001932 655 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL------RAVFGEVYP-DP 727 (995)
Q Consensus 655 ~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~------~~~f~e~y~-d~ 727 (995)
.....| ++.++++||||+.+.++|++++.+||++||++|++|+||+...++++||.++..- ..++..... +.
T Consensus 90 ~~~~~~-~~~~~g~y~d~~~~~~lt~e~l~~Ie~~m~~iI~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~ 168 (638)
T PRK00413 90 AKLTIG-PVIENGFYYDFDRERPFTPEDLEAIEKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEE 168 (638)
T ss_pred ceEEEC-CccCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCCCe
Confidence 544555 7778999999998778999999999999999999999999999999999986211 111111112 37
Q ss_pred EEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeec-------cCCeeEEEEEechHHHHHHHH
Q 001932 728 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTTGLAYKAFEA 800 (995)
Q Consensus 728 VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G~~RI~~vtG~~A~~~~~~ 800 (995)
||+++++ ++ .++||||||+|||+|+.|+|+++++. +++++||++++.+ ...+
T Consensus 169 v~iy~~~----------------~~-~d~c~G~hv~~Tg~i~~f~i~~~~~g~~l~~~~~~~l~Ri~g~~~~----~~~~ 227 (638)
T PRK00413 169 ISLYRQG----------------EF-VDLCRGPHVPSTGKIKAFKLLKVAGAYWRGDSKNKMLQRIYGTAFA----DKKE 227 (638)
T ss_pred EEEEEEC----------------CE-EEECCCCCCCcccCCceeEEEEEcceEEcCCCcchheEEEEeeecC----CHHH
Confidence 8998887 33 57999999999999999999999654 7899999999665 4456
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHH--HhhhcCCCccCCCChHHHHHHHHHHHHH
Q 001932 801 ACSLEKEVDDASKIEGSLLEKTVAS--LKSKVDGAAIPAPKKADIRAKIALLQNQ 853 (995)
Q Consensus 801 ~~~~~~~l~~~~~~~~~~i~k~l~~--~~~~~~~~~~~~~~~~~l~~~l~~l~~e 853 (995)
+.++++.++++..++|+.+++++.. |.+..+|...|+|.+..+.+.|.++..+
T Consensus 228 l~~~~~~~~e~~~~~h~~l~~~~~~~~~~~~~~G~~~~lp~~~~~~~~i~~~~~~ 282 (638)
T PRK00413 228 LDAYLHRLEEAKKRDHRKLGKELDLFHFQEEAPGLPFWHPKGWTIRRELERYIRR 282 (638)
T ss_pred HHHHHHHHHHhccccHHHHHHhcCEEEecCCCCcceEEcccHHHHHHHHHHHHHH
Confidence 7788888999999999999999874 5666799999999999999888777544
No 16
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.91 E-value=9.7e-24 Score=254.71 Aligned_cols=199 Identities=25% Similarity=0.325 Sum_probs=166.7
Q ss_pred hHhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhc
Q 001932 633 LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKC 712 (995)
Q Consensus 633 ~~m~~HTAtHLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~~NeiI~~nlpV~~~~~~~eEA~~ 712 (995)
..+++|||+|||++|++++||......| +..++++||||+.+.++|++++.+||+.||++|++|+||++..++++||.+
T Consensus 6 ~~~~~hS~~hlL~~A~~~~~~~~~~~~~-~~~~~g~~~d~~~~~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~~ 84 (575)
T PRK12305 6 LEVIRHSAAHVLAQAVQELFPDAKLGIG-PPIEDGFYYDFDVPEPFTPEDLKKIEKKMKKIIKRGLPFEREEVSREEARE 84 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEeC-CCcCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHH
Confidence 6789999999999999999987554555 677899999999877899999999999999999999999999999999998
Q ss_pred ccCc----hhhcCccCCCCEEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeec-------cC
Q 001932 713 INGL----RAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AK 781 (995)
Q Consensus 713 ~~g~----~~~f~e~y~d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~ 781 (995)
+..- ..++....++.|||++++ ++ .++||||||+|||+||.|+|+++++. ++
T Consensus 85 ~f~~~~~k~~l~~~~~~~~vri~~ig----------------~~-~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~ 147 (575)
T PRK12305 85 EFANEPYKLELIDDIPEEGITIYDNG----------------DF-EDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNP 147 (575)
T ss_pred hCCcChhHHHhhhhcCCCeEEEEEEC----------------CE-EEECCCCCCCCccCCceeEEEEEcceEECCCCCCc
Confidence 6321 112222233579999998 33 47899999999999999999999554 78
Q ss_pred CeeEEEEEechHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHh--h-hcCCCccCCCChHHHHHHHHHHHHH
Q 001932 782 GIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLK--S-KVDGAAIPAPKKADIRAKIALLQNQ 853 (995)
Q Consensus 782 G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~l~~~~--~-~~~~~~~~~~~~~~l~~~l~~l~~e 853 (995)
+++||++++.+ ..++++++++.++++.+++|+++++++..|. + ..+|.+.|+|.+..+.+.|.++..+
T Consensus 148 ~l~Ri~g~~~~----~~~~l~~~~~~~~e~~~~dh~~l~~~~~l~~~~~~~~~G~~~~~p~~~~~~~~l~~~~~~ 218 (575)
T PRK12305 148 QLQRIYGTAWE----TKEELKEYLKRLEEAKKRDHRKLGKELDLFSFPDEIGPGLPVWHPKGAIIRREIEDYLRK 218 (575)
T ss_pred ceEEEEEEecC----CHHHHHHHHHHHHHhhhccHHHHHHhcCccccccccCCcceEEeccHHHHHHHHHHHHHH
Confidence 99999999654 5567888999999999999999999987665 2 3589999999999999888777554
No 17
>PLN02837 threonine-tRNA ligase
Probab=99.90 E-value=3e-23 Score=250.95 Aligned_cols=199 Identities=21% Similarity=0.311 Sum_probs=166.1
Q ss_pred hHhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhc
Q 001932 633 LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKC 712 (995)
Q Consensus 633 ~~m~~HTAtHLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~~NeiI~~nlpV~~~~~~~eEA~~ 712 (995)
..+++||++|||++|++++||....+.| +..++++||||+. .++|++++.+||++||++|.+|+||+..+++++||.+
T Consensus 43 ~~~~~HSa~HLL~~Av~~l~~~~~~~ig-~~~~~g~y~D~~~-~~lt~edl~~IEk~m~~iI~~n~pI~~~~v~~eEA~~ 120 (614)
T PLN02837 43 LLKIRHTCAHVMAMAVQKLFPDAKVTIG-PWIENGFYYDFDM-EPLTDKDLKRIKKEMDRIISRNLPLVREEVSREEAQK 120 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEC-CccCCCEEEEecC-CCCCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHHHH
Confidence 7899999999999999999987666777 5567899999986 5899999999999999999999999999999999998
Q ss_pred ccCc------hhhcCccCCCCEEEEEeCCcccccccCCCCccccceeeeeccCCCccccccc--ccEEEEeeeec-----
Q 001932 713 INGL------RAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREA--EAFALLSEEGI----- 779 (995)
Q Consensus 713 ~~g~------~~~f~e~y~d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeI--g~fkI~~~~~~----- 779 (995)
+..- ..++.....+.||+++|+ +.+.++||||||+|||+| +.|+|.+..+.
T Consensus 121 ~f~~~~~~~k~~Ll~~~~~~~Iriy~ig----------------~~~~D~c~GpHv~sTg~I~~~~~kl~~~~g~ywrg~ 184 (614)
T PLN02837 121 RIMAINEPYKLEILEGIKEEPITIYHIG----------------EEWWDLCAGPHVERTGKINKKAVELESVAGAYWRGD 184 (614)
T ss_pred HHHHcCCchhHHHhccCCCCeEEEEEEC----------------CeEEEecCCCCcccccccccceEEEEEeehhhhccc
Confidence 6210 001111113569999998 345788999999999999 99999998874
Q ss_pred --cCCeeEEEEEechHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHH--hhh-cCCCccCCCChHHHHHHHHHHHHH
Q 001932 780 --AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASL--KSK-VDGAAIPAPKKADIRAKIALLQNQ 853 (995)
Q Consensus 780 --~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~l~~~--~~~-~~~~~~~~~~~~~l~~~l~~l~~e 853 (995)
+..++||++++. ...++++++++.++++.+++|++|+++++.| .+. -+|.++|+|.+..+..+|.++..+
T Consensus 185 ~~~~~l~ri~g~~~----~~~~~l~~~~~~~~e~~~rdH~~lg~~l~lf~~~~~~g~G~~~~~p~G~~l~~~L~~~~~~ 259 (614)
T PLN02837 185 EKNQMLQRIYGTAW----ESEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDDAGGGLVFWHPKGAIVRHIIEDSWKK 259 (614)
T ss_pred ccCcceEEEEEEec----CCHHHHHHHHHHHHHhhhCCHHHHHHHcCCcccCcCcCCcceEEechHHHHHHHHHHHHHH
Confidence 467999999955 4666788999999999999999999997755 333 368999999999999999888643
No 18
>PLN02908 threonyl-tRNA synthetase
Probab=99.89 E-value=2.7e-22 Score=245.75 Aligned_cols=235 Identities=20% Similarity=0.240 Sum_probs=191.8
Q ss_pred ecceEEEEeeCCeeeccceeecccceEEEEeEEEeCCEEEEEEeeccCCCcCCCCCeEehhhHhhhchHHHHHHHHHHHH
Q 001932 572 LASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKLIAPNHTCTHMLNFALREV 651 (995)
Q Consensus 572 LD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~ivH~~~~~~~~~~l~~G~~V~~~~~m~~HTAtHLL~aAlr~v 651 (995)
+.+.+..+..+|++.|+.+.+..++.+++++..+..| ..+++||++|||.+|++++
T Consensus 82 ~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~~eg------------------------~~~y~hS~ahlL~~A~~~~ 137 (686)
T PLN02908 82 LANSALIAQVDGVLWDMTRPLEGDCKLKLFKFDDDEG------------------------RDTFWHSSAHILGEALELE 137 (686)
T ss_pred chhhcEEEEECCEEeecCccccCCCeeEEeccccHHH------------------------HHHHHHHHHHHHHHHHHHH
Confidence 3445566788999999999999999999999877653 6899999999999999999
Q ss_pred hCCccccccccccC-CceEEEecCC-CCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhcccC---ch-hhcCccCC
Q 001932 652 LGDHVDQKGSVVLP-EKLRFDFSHG-KPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCING---LR-AVFGEVYP 725 (995)
Q Consensus 652 lg~~v~q~Gs~v~~-d~~r~Df~~~-~~lt~eeL~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g---~~-~~f~e~y~ 725 (995)
||.. ...|..+.+ +++||||..+ .++|++++.+||++|+++|.+++||+...++++||.++.. .. .++.. .+
T Consensus 138 ~~~~-l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~~-~~ 215 (686)
T PLN02908 138 YGCK-LCIGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIIND-LP 215 (686)
T ss_pred hCCe-EEecCccccCCcEEEEeecCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHhh-CC
Confidence 9754 456644433 8999998743 4799999999999999999999999999999999997621 10 11111 22
Q ss_pred --CCEEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeec-------cCCeeEEEEEechHHHH
Q 001932 726 --DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTTGLAYK 796 (995)
Q Consensus 726 --d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G~~RI~~vtG~~A~~ 796 (995)
+.++|.++++ .+++|+||||+|||+|+.|+|++.++. +..++||++++.+.
T Consensus 216 ~~~~v~vY~~g~-----------------~~D~c~Gphv~sTg~ik~f~l~~~~~~~~lg~~~~~~lqRi~G~sfp~--- 275 (686)
T PLN02908 216 EDATITVYRCGP-----------------LVDLCRGPHIPNTSFVKAFACLKASSAYWRGDVDRESLQRVYGISFPD--- 275 (686)
T ss_pred CCCeeEEEEECC-----------------EEEecCCCCCCCCCccceeEEEEecceEEcCCCcchhhEEEeeeccCC---
Confidence 3588888872 367899999999999999999998854 46899999997664
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHH--HHhhhcCCCccCCCChHHHHHHHHHHHHH
Q 001932 797 AFEAACSLEKEVDDASKIEGSLLEKTVA--SLKSKVDGAAIPAPKKADIRAKIALLQNQ 853 (995)
Q Consensus 797 ~~~~~~~~~~~l~~~~~~~~~~i~k~l~--~~~~~~~~~~~~~~~~~~l~~~l~~l~~e 853 (995)
..++.++++.++++.+++|+.|+++++ .|.+..+|.++|+|.+..+.+.|.++..+
T Consensus 276 -~~~l~~~~~~~~e~~~rdH~~lg~~~~lf~~~~~~~G~~~~lP~g~~i~~~l~~~~~~ 333 (686)
T PLN02908 276 -KKLLKEYKHRIEEAKKRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNKLMDFIRE 333 (686)
T ss_pred -hHHHHHHHhhhhhccccCHHHHHHhcCCeeecCCCCcceEEechHHHHHHHHHHHHHH
Confidence 456788889999999999999999866 45666799999999999999988887554
No 19
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.83 E-value=4.5e-20 Score=222.46 Aligned_cols=196 Identities=24% Similarity=0.277 Sum_probs=163.3
Q ss_pred hchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhcccCc
Q 001932 637 NHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL 716 (995)
Q Consensus 637 ~HTAtHLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~ 716 (995)
+||++|||++|+++++|....+.|+. .++++||||+...++|++++.+||++||++|.+++||....++++||.++...
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~-i~~g~~~df~~~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~~ 79 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPV-VEDGFYYDFELDRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFKV 79 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCC-cCCCceecccCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHhc
Confidence 69999999999999999877788844 47789999998778999999999999999999999999999999999986220
Q ss_pred -----hhhcCcc-CCCCEEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeec-------cCCe
Q 001932 717 -----RAVFGEV-YPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGI 783 (995)
Q Consensus 717 -----~~~f~e~-y~d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G~ 783 (995)
..++.+. +.+.|+++.++ +++.++|+||||+|||+|+.|+|+++.+. +..+
T Consensus 80 ~~~~k~~Ll~~~~~~~~v~vy~~g----------------~~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l 143 (563)
T TIGR00418 80 LEPYKLELLDEIPNGVKRTPYGWG----------------KAFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKML 143 (563)
T ss_pred cChhHHHHHhcCCCCCeEEEEEeC----------------CEEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCce
Confidence 1122221 34679999988 55789999999999999999999987764 4689
Q ss_pred eEEEEEechHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhhh---cCCCccCCCChHHHHHHHHHHHHH
Q 001932 784 RRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSK---VDGAAIPAPKKADIRAKIALLQNQ 853 (995)
Q Consensus 784 ~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~l~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~e 853 (995)
+||++++.+ ..+++.++++.++++..++|+++++++..|.-. .+|...|+|.+..+.+.|+++..+
T Consensus 144 ~Ri~g~~~~----~~~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~ 212 (563)
T TIGR00418 144 QRIYGTAWA----DKKQLAAYLLRLEEAKKRDHRKLGKELELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQ 212 (563)
T ss_pred EeeeeccCC----CHHHHHHHHHhhhhhhcCCHHHHHHhCCCcccCcccCCcceEEeccHHHHHHHHHHHHHH
Confidence 999999654 556778888889999999999999997755322 589999999999999888887554
No 20
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.6e-17 Score=196.93 Aligned_cols=189 Identities=26% Similarity=0.391 Sum_probs=159.9
Q ss_pred hHhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhc
Q 001932 633 LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKC 712 (995)
Q Consensus 633 ~~m~~HTAtHLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~~NeiI~~nlpV~~~~~~~eEA~~ 712 (995)
.-..+||++|||..|+.++++. ...| .+.++++|+||+...++|++++.+||+.|+++|.+++||....+++++|++
T Consensus 26 ~~~~rhs~ah~l~~av~~l~p~--~~~g-p~ie~gfyyd~~~~~~~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~ 102 (589)
T COG0441 26 LEIIRHSCAHVLAQAVKRLYPD--VTIG-PVIEEGFYYDFDVKEPITPEDLLKIEKEMKEIAKENLPIEREVVSREEARA 102 (589)
T ss_pred hhhhhhHHHHHHHHHHHHhCCC--cccc-CcccceeEEeeccCCCCCHHHHHHHHHHHHHHHHhcCceEEEEecHHHHHH
Confidence 4567899999999999999998 6788 888999999999888899999999999999999999999999999999998
Q ss_pred ccCchhhcCccC--------CCCEEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeec-----
Q 001932 713 INGLRAVFGEVY--------PDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI----- 779 (995)
Q Consensus 713 ~~g~~~~f~e~y--------~d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~----- 779 (995)
. |+ .| ++++-+.+- +...++|-|+||+|||.| .|++++..+.
T Consensus 103 ~------f~-~yK~~~i~~~~~~~s~y~~-----------------~~~~dlc~gph~~~t~~i-~fkl~~~~~ayw~g~ 157 (589)
T COG0441 103 P------FG-PYKAELIDCKGHPLSEYSQ-----------------GEFVDLCRGPHVPSTGKI-AFKLLKLAGAYWRGD 157 (589)
T ss_pred H------hh-hhHHHHHhcCCCCceeEec-----------------CccccccCCCCCCccceE-EEEEEEecchhhccC
Confidence 7 43 12 122333222 235899999999999999 9999988864
Q ss_pred --cCCeeEEEEEechHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhh---hcCCCccCCCChHHHHHHHHHHHHH
Q 001932 780 --AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKS---KVDGAAIPAPKKADIRAKIALLQNQ 853 (995)
Q Consensus 780 --~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~l~~~~~---~~~~~~~~~~~~~~l~~~l~~l~~e 853 (995)
++..+||++++ +....+++.+++.+++..++||++++++++.|.- .-+|+++|+|+++.+++.++++...
T Consensus 158 ~~~~~l~riygta----~~~~~~l~~~l~~~eea~krdHrklg~el~LF~~~~~~~~G~~~~~pkG~~ir~~le~y~~~ 232 (589)
T COG0441 158 ENNEMLQRIYGTA----FADKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATIRNLLEDYVRT 232 (589)
T ss_pred CCCcceeEEeccc----cCCHHHHHHHHhhhhhccCCchHhHHHhhcceeeccccCCcceEECCCcccHHHHHHHHHHH
Confidence 67799999994 5566778888999999999999999999886642 3589999999999999999988654
No 21
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=99.33 E-value=1.8e-12 Score=103.63 Aligned_cols=44 Identities=52% Similarity=0.869 Sum_probs=37.9
Q ss_pred EEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeeccCCeeEEE
Q 001932 728 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 787 (995)
Q Consensus 728 VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~ 787 (995)
||||+|+ +++.++||||||+|||+|+.|+|++.++.++|++|||
T Consensus 1 vRvv~i~----------------~~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIG----------------DFDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEET----------------TTEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred CEEEEEC----------------CeeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence 7999998 5799999999999999999999999999999999997
No 22
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=99.00 E-value=3.4e-10 Score=90.41 Aligned_cols=44 Identities=55% Similarity=0.857 Sum_probs=40.5
Q ss_pred EEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeeccCCeeEEE
Q 001932 728 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 787 (995)
Q Consensus 728 VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~ 787 (995)
+|+|.|+ +++.++||||||+||++||.|+|++.++...+++||+
T Consensus 1 vriv~i~----------------~~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIG----------------DFDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY 44 (44)
T ss_pred CEEEEEC----------------CEEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence 5899998 6789999999999999999999999999888888985
No 23
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=98.82 E-value=6.3e-09 Score=124.66 Aligned_cols=99 Identities=14% Similarity=0.185 Sum_probs=85.8
Q ss_pred ceeeeeccC-CCcccccccccEEEEeeeec----cCCeeEEEEEechHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Q 001932 751 SISAELCGG-THLSNTREAEAFALLSEEGI----AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVAS 825 (995)
Q Consensus 751 ~~d~e~CgG-THV~nTgeIg~fkI~~~~~~----~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~l~~ 825 (995)
+..+++|+| |||+|||.|+.|+|++.++. ++.++||++++. ...++++++++.++++.++||++|+++++.
T Consensus 74 ~~~~~~~~~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~f----~~~~~l~~~~~~~eea~~rdHr~lg~~l~l 149 (545)
T PRK14799 74 GNKVSIIEDKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVAF----ETEEQLKDYLTWLEKAEETDHRLIGEKLDL 149 (545)
T ss_pred cCceeecCCCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEeec----CCHHHHHHHHHHHHhcccCCHHHHHHHcCC
Confidence 456899999 99999999999999999986 468999999955 466678899999999999999999999875
Q ss_pred H--hhh-cCCCccCCCChHHHHHHHHHHHHH
Q 001932 826 L--KSK-VDGAAIPAPKKADIRAKIALLQNQ 853 (995)
Q Consensus 826 ~--~~~-~~~~~~~~~~~~~l~~~l~~l~~e 853 (995)
| .+. .+|.++|+|.+..+.+.|.++..+
T Consensus 150 f~~~~~~~~G~~~~lP~G~~i~~~L~~~~r~ 180 (545)
T PRK14799 150 FSFHEEAGSGLVLFHPKGQTIRNELIAFMRE 180 (545)
T ss_pred cccccccCCcceEEcChHHHHHHHHHHHHHH
Confidence 4 333 689999999999999998888654
No 24
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=9e-10 Score=124.35 Aligned_cols=173 Identities=18% Similarity=0.191 Sum_probs=128.0
Q ss_pred ecceEEEEeeCCeeeccceeecccceEEEEeEEEeCCEEEEEEeeccCCCcCCCCCeEehhhHhhhchHHHHHHHHHHHH
Q 001932 572 LASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKLIAPNHTCTHMLNFALREV 651 (995)
Q Consensus 572 LD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~ivH~~~~~~~~~~l~~G~~V~~~~~m~~HTAtHLL~aAlr~v 651 (995)
|+++..-+..+|++.|+......++ ++.++..+.+| +...+||.+|+|..|+.+.
T Consensus 30 la~~~~~~~vn~~~~Dl~rp~e~~~-lell~f~~~~~------------------------k~vfwhssahvlg~a~e~~ 84 (560)
T KOG1637|consen 30 LADDAVIAKVNGVLWDLDRPLEGDC-LELLKFDDDEG------------------------KDVFWHSSAHVLGEALEQE 84 (560)
T ss_pred hhhhhHHHhhcCceeccCCcchhhH-HHHccCCCccc------------------------ceeeeehhhhHhhHHHHHh
Confidence 4555566778999999999887777 77777666553 4578999999999999999
Q ss_pred hCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhcccCchhhcCccCCCCEEEE
Q 001932 652 LGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVV 731 (995)
Q Consensus 652 lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~~~~f~e~y~d~VRvV 731 (995)
||.+ ...| .-.++++|+|+ + ..++.++ +|
T Consensus 85 ~g~~-lc~G-pp~~~gf~yd~-~-~~i~~~d-----------------------------------------~~------ 113 (560)
T KOG1637|consen 85 YGAH-LCIG-PPIEEGFYYDM-L-DEISSND-----------------------------------------FP------ 113 (560)
T ss_pred cCee-EeeC-CCCcCceehhh-h-ccccccc-----------------------------------------cc------
Confidence 9976 4677 56788999986 3 2222111 11
Q ss_pred EeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeeccCCeeEEEEEechHHHHHHHHHHHHHHHHHHH
Q 001932 732 AIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDA 811 (995)
Q Consensus 732 ~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~ 811 (995)
+| + ++||++||.|+.|+|++-++. . -..-+++ ...+++++++-.+++
T Consensus 114 ~~---------------------e---~phi~~tg~ika~k~~~nss~---y--w~~~sfp----~~k~~k~~~~~~~Ea 160 (560)
T KOG1637|consen 114 SI---------------------E---APHIRHTGKIKAFKILKNSSA---Y--WEGDSFP----DPKQLKEWEKFQEEA 160 (560)
T ss_pred cc---------------------c---cccccccceeeeeeeeccchh---h--hccccCC----CHHHHHHHHhhchhh
Confidence 01 1 189999999999999987764 0 0111334 344667777788889
Q ss_pred hhcccchhHHHHH--HHhhhcCCCccCCCChHHHHHHHHHHHHH
Q 001932 812 SKIEGSLLEKTVA--SLKSKVDGAAIPAPKKADIRAKIALLQNQ 853 (995)
Q Consensus 812 ~~~~~~~i~k~l~--~~~~~~~~~~~~~~~~~~l~~~l~~l~~e 853 (995)
..++|++|+++-+ .|.+..||++||+|++..++++|-++.+.
T Consensus 161 ~~rdHRkig~~qeLfff~~lSPGS~FflP~G~~iyN~Lv~fir~ 204 (560)
T KOG1637|consen 161 KKRDHRKIGKEQELFFFHELSPGSCFFLPHGTRIYNTLVDFIRA 204 (560)
T ss_pred hhhhhhhhhhhhhheeeccCCCcceeeccCcchHHHHHHHHHHH
Confidence 9999999999855 55667799999999999999999888553
No 25
>PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain. DHHA1 is diagnostic of DHH subfamily 1 members []. This domain is also found in alanyl tRNA synthetase e.g. P00957 from SWISSPROT, suggesting that it may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.; GO: 0003676 nucleic acid binding; PDB: 1IR6_A 2ZVF_F 3G98_B 3DEV_A 2ZXR_A 2ZXO_A 2ZXP_A.
Probab=97.74 E-value=3.8e-05 Score=66.83 Aligned_cols=65 Identities=26% Similarity=0.360 Sum_probs=51.5
Q ss_pred cEEEEEeeCCCCeEEEEEecCCCcccccCCCHH-HHHHHHhhccCCCCCCCCCCCcccccCCcCCHHHHHHHHHH
Q 001932 915 PVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVS-EWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAE 988 (995)
Q Consensus 915 ~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~A~-~l~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~ 988 (995)
++++++. .++++.+.+.+++ +++.. +|++++++.++|+|| |.+.+|||++++..+++++++.+.+
T Consensus 3 ~~i~~~~--~~~~~~~s~rs~~------~~~~~~~~~~~~~~~~~G~GG-Gh~~aAg~~~~~~~~l~~~~~~~~e 68 (68)
T PF02272_consen 3 PVIVFSE--EDGKIKVSARSSK------GVDDKGEILKELAEKLGGKGG-GHPDAAGGSIPKPEKLEEFLKALEE 68 (68)
T ss_dssp EEEEEEE--ESSTEEEEEEESS------SSTHH-HHHHHCHHHGTCEEE-EESSEEEEEESCGGHHHHHHHHHHH
T ss_pred EEEEEEE--cCCEEEEEEEECC------chhhHHHHHHHHHHHcCCCCC-CCHHHhcccCCCchhHHHHHHHhcC
Confidence 4566663 3567777776544 35555 999999999999999 9999999999998889999887754
No 26
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=96.01 E-value=0.025 Score=59.09 Aligned_cols=181 Identities=21% Similarity=0.197 Sum_probs=102.3
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCC--------ccccc---ccccccccccc-CCCCC--CCcccccccccccc
Q 001932 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPT--------LLFAN---AGMNQYKPIFL-GTADP--NTQLSKLTRACNTQ 126 (995)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~t--------llftn---AGm~~fk~~f~-G~~~p--~~~~~~~~r~~~~Q 126 (995)
+.+.+.+-++|.+.|+..+-++++++..+-. +.+.| ..+..+.|-.+ +.... .|-.....|+.-.+
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfeig 82 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIG 82 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEEEc
Confidence 4678888999999999999999998742210 11111 01111222111 10000 00000124788899
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccccccccccc-----HHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCC
Q 001932 127 KCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYF-----KNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAP 201 (995)
Q Consensus 127 kCiR~gGkhnDl~~VG~t~rH~TfFEMlGn~SfgdYf-----K~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~ 201 (995)
+|.|.. -..-+ .+|..-|.|+|-..+|... -.+++..++++|. .+|++.+-.++. .
T Consensus 83 ~vfr~e-----~~~~~--~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~-~lg~~~~~~~~~--~--------- 143 (211)
T cd00768 83 PAFRNE-----GGRRG--LRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLR-ALGIKLDIVFVE--K--------- 143 (211)
T ss_pred ceeecC-----CCccc--cccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHH-HcCCCcceEEEe--c---------
Confidence 999962 11111 3677889999999999643 3678899999996 578743322210 1
Q ss_pred cHHHHHHHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccc------
Q 001932 202 DNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFN------ 275 (995)
Q Consensus 202 D~E~~~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~------ 275 (995)
....||. +.+|+|.+|+++...+ |..||+++-...-+
T Consensus 144 ---------------------~~~~~~~----~~~g~~~~i~~~~~~~------------~~~eig~~g~~~~~~~~~~~ 186 (211)
T cd00768 144 ---------------------TPGEFSP----GGAGPGFEIEVDHPEG------------RGLEIGSGGYRQDEQARAAD 186 (211)
T ss_pred ---------------------Cchhhcc----ccCCceEEEEEEccCC------------CeEEEeeceeecCchhHhhh
Confidence 0112332 4789999999975322 33566655443222
Q ss_pred ---cCCCCccccCCCCccccCchHHHH
Q 001932 276 ---RESDGSLKPLPAKHVDTGLGFERL 299 (995)
Q Consensus 276 ---~~~~g~l~~Lp~~~IDTGmGlERl 299 (995)
.++++.. ..| .+|=.|+|+||+
T Consensus 187 l~~~~~~~~~-~~p-~~~~~~~~~~R~ 211 (211)
T cd00768 187 LYFLDEALEY-RYP-PTIGFGLGLERL 211 (211)
T ss_pred hheecccccc-cCc-eeecCccCccCC
Confidence 1233433 244 466677999995
No 27
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=95.24 E-value=0.16 Score=55.08 Aligned_cols=172 Identities=22% Similarity=0.284 Sum_probs=101.5
Q ss_pred CCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-c---cCCCCCCCccccccccccccccccc
Q 001932 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-F---LGTADPNTQLSKLTRACNTQKCIRA 131 (995)
Q Consensus 56 ~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~-f---~G~~~p~~~~~~~~r~~~~QkCiR~ 131 (995)
..|+-.+|-.+--+|..++|..++-++.+= + |--.|-|. | ||.++ -+++-+|+|.|.
T Consensus 2 ~~~~fQ~iI~~Lq~fWa~~GC~i~qPyD~E---------v--GAGT~~P~Tflr~Lgpep--------w~vaYvqPsRRP 62 (283)
T PRK09348 2 KKMTFQDIILTLQDYWADQGCVILQPYDME---------V--GAGTFHPATFLRALGPEP--------WNAAYVQPSRRP 62 (283)
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEECCcccc---------c--ccccCCHHHHHHhcCCCc--------cccccccCCCCC
Confidence 468999999999999999999998877652 2 34477884 3 35432 367999999997
Q ss_pred CCCCCCC---CCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHH
Q 001932 132 GGKHNDL---DDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDI 208 (995)
Q Consensus 132 gGkhnDl---~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~i 208 (995)
. |= +|.-+ -.||.=|..+=-=|-.+ ..+.=.+-| +.+||+|.
T Consensus 63 ~----DGRYGeNPNR-Lq~y~QfQVilKPsP~n-----iQelYL~SL-~~lGid~~------------------------ 107 (283)
T PRK09348 63 T----DGRYGENPNR-LQHYYQFQVILKPSPDN-----IQELYLGSL-EALGIDPL------------------------ 107 (283)
T ss_pred C----CCCcCCCchh-hhhheeeEEEEcCCCcc-----HHHHHHHHH-HHhCCCcc------------------------
Confidence 2 31 12222 23444344432222221 111111112 23555554
Q ss_pred HHhhCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccccCCCCccccCCCC
Q 001932 209 WLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAK 288 (995)
Q Consensus 209 W~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~Lp~~ 288 (995)
+|=+|| .+|| ||-=.-|--|===|+--| | +||=-. +=|.+ ..| + ++...
T Consensus 108 -------~hDIRF-VEDn-WEsPTLGAwGlGWEVWld---G--------------MEITQF--TYFQQ-vGG-i-~~~pv 156 (283)
T PRK09348 108 -------EHDIRF-VEDN-WESPTLGAWGLGWEVWLD---G--------------MEVTQF--TYFQQ-VGG-I-ECKPV 156 (283)
T ss_pred -------ccceeE-eecC-CCCCcccccccceEEEEC---C--------------eeeeee--eeeee-eCC-e-ecccc
Confidence 333455 2455 543112555555566643 1 666533 32332 333 3 45556
Q ss_pred ccccCchHHHHHHHHhCCCCCccc
Q 001932 289 HVDTGLGFERLTSILQNKMSNYDT 312 (995)
Q Consensus 289 ~IDTGmGlERl~~vlqg~~snydt 312 (995)
.+.-=+||||||+.+||+.|+||.
T Consensus 157 ~~EITYGLERiamylQ~vd~v~dl 180 (283)
T PRK09348 157 TGEITYGLERLAMYLQGVDNVYDL 180 (283)
T ss_pred ceeeehhHHHHHHHHhCCCceeee
Confidence 777789999999999999999997
No 28
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=93.78 E-value=0.54 Score=51.34 Aligned_cols=173 Identities=20% Similarity=0.285 Sum_probs=98.2
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCCCCCCcccccccccccccccccCCCCC
Q 001932 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136 (995)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~-f~G~~~p~~~~~~~~r~~~~QkCiR~gGkhn 136 (995)
|+-.+|-.+--+|..++|..++-++.+= -|--.|-|. |+..--|. | -+++-+|+|.|..
T Consensus 1 m~fQ~iI~~Lq~fWa~~GC~i~QPyD~E-----------vGAGT~hPaTflralgpe-p----w~vAYVqPsRRP~---- 60 (293)
T TIGR00388 1 QTFQGLILKLQEYWANQGCLIVQPYDME-----------KGAGTMHPMTFLRSLGPE-P----WAVAYVEPSRRPT---- 60 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCcccc-----------cccccCCHHHHHHhcCCC-c----ceeccccCCCCCC----
Confidence 5678888999999999999998876652 234478884 43322221 1 3689999999972
Q ss_pred CC---CCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhhC
Q 001932 137 DL---DDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFL 213 (995)
Q Consensus 137 Dl---~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~~ 213 (995)
|= +|.-+- .||.=|..+=-=|-.+ ..+.=.+-| +.+||+|.
T Consensus 61 DGRYGeNPNRL-q~yyQfQVilKPsP~n-----iQelYL~SL-~~lGid~~----------------------------- 104 (293)
T TIGR00388 61 DGRYGENPNRL-QHYYQFQVVIKPSPDN-----IQELYLDSL-RALGIDPT----------------------------- 104 (293)
T ss_pred CCCCCCCchhh-hheeeeEEEECCCCcc-----HHHHHHHHH-HHhCCCcc-----------------------------
Confidence 31 233332 3444344432222222 111111111 23455553
Q ss_pred CCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccccCCCCccccCCCCccccC
Q 001932 214 PASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTG 293 (995)
Q Consensus 214 ~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDTG 293 (995)
+|=+|| .+|| ||-=.-|--|===|+--| | +||=- |+=|.+ ..| + ++..-.+.-=
T Consensus 105 --~hDIRF-VEDn-WEsPTLGAwGlGWEVWld---G--------------MEITQ--FTYFQQ-vGG-i-~~~pv~~EIT 158 (293)
T TIGR00388 105 --EHDIRF-VEDN-WENPTLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQ-VGG-L-ECKPVSVEIT 158 (293)
T ss_pred --ccCeeE-eecC-CCCCcccccccccEEEEC---C--------------eeeee--eeeeee-eCC-e-eccccceeee
Confidence 344555 3555 543112555555566543 1 66643 333333 333 3 3444457778
Q ss_pred chHHHHHHHHhCCCCCccc
Q 001932 294 LGFERLTSILQNKMSNYDT 312 (995)
Q Consensus 294 mGlERl~~vlqg~~snydt 312 (995)
+||||||+.|||+.|+||.
T Consensus 159 YGLERiaMylQ~vd~v~dl 177 (293)
T TIGR00388 159 YGLERLAMYIQGVENVYDL 177 (293)
T ss_pred hhHHHHHHHHhCCCeeeee
Confidence 9999999999999999996
No 29
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=92.27 E-value=0.89 Score=52.12 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=25.5
Q ss_pred ccCC-CCcCCCCChHHHHHHHHHhhhhCCCeeecCCCccc
Q 001932 48 MPGA-DPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVP 86 (995)
Q Consensus 48 ~~~~-~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp 86 (995)
+||+ ...-..=...++++.--++|.+-|.+.+....|..
T Consensus 97 ~p~~~~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes 136 (339)
T PRK00488 97 LPGRRIELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIET 136 (339)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCcccc
Confidence 4553 23333334667777777788888999988777753
No 30
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=91.75 E-value=0.93 Score=58.35 Aligned_cols=173 Identities=20% Similarity=0.317 Sum_probs=103.3
Q ss_pred CCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-c---cCCCCCCCcccccccccccccccccC
Q 001932 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-F---LGTADPNTQLSKLTRACNTQKCIRAG 132 (995)
Q Consensus 57 ~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~-f---~G~~~p~~~~~~~~r~~~~QkCiR~g 132 (995)
.||-.++-.+--+|..++|..++-++.+= -|--.|-|. | +|.++ -+++-+|+|.|..
T Consensus 4 ~~~~q~~i~~l~~~w~~~gc~~~qp~~~e-----------~gagt~~p~t~~~~l~~~~--------~~~ayv~p~~rp~ 64 (1000)
T PRK14908 4 PLTMQDMLLALLRYWSEQGCIIHQGYDLE-----------VGAGTFNPATFLRVLGPEP--------WRVAYVEPSRRPD 64 (1000)
T ss_pred cccHHHHHHHHHHHHHHCCCEEECCcccc-----------cccCcCCHHHHHhhcCCCC--------CcccccCCCCCCC
Confidence 47999999999999999999998877652 244477784 3 45443 3679999999972
Q ss_pred -CCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHh
Q 001932 133 -GKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 211 (995)
Q Consensus 133 -GkhnDl~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~ 211 (995)
|..- +|.-+ -.||+=|..+=-=|-++ ..+.=.+-| +.+||++..
T Consensus 65 d~ryg--~npnr-l~~~~q~qvi~kp~p~~-----~q~~yl~sl-~~~gi~~~~-------------------------- 109 (1000)
T PRK14908 65 DGRYG--QNPNR-LQTYTQFQVILKPVPGN-----PQELYLESL-KAIGIDLRD-------------------------- 109 (1000)
T ss_pred CCCcC--CCchh-hhhheeeEEEECCCCcc-----HHHHHHHHH-HHcCCCccc--------------------------
Confidence 1111 23332 24555555543333332 111111112 346666543
Q ss_pred hCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccccCCCCccccCCCCccc
Q 001932 212 FLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVD 291 (995)
Q Consensus 212 ~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~Lp~~~ID 291 (995)
|=+|| .+|| |+-=.-|--|===|+--| | +||=-. +=|.+ ..| + ++....+.
T Consensus 110 -----~dirf-ved~-we~p~lga~glgwevw~~---g--------------meitqf--tyfqq-~gg-~-~~~~~~~e 160 (1000)
T PRK14908 110 -----HDIRF-VHDD-WENPTIGAWGLGWEVWLD---G--------------MEITQF--TYFQQ-AGG-K-PLDPISGE 160 (1000)
T ss_pred -----cceeE-eecC-CCCCcccccccccEEEEC---C--------------eeeeee--eeehh-cCC-e-ecccccee
Confidence 22444 2555 543112555655566543 1 666533 22332 333 3 45666778
Q ss_pred cCchHHHHHHHHhCCCCCccc
Q 001932 292 TGLGFERLTSILQNKMSNYDT 312 (995)
Q Consensus 292 TGmGlERl~~vlqg~~snydt 312 (995)
-=+|||||++.|||+.+.||.
T Consensus 161 itygler~~m~~q~~~~~~~~ 181 (1000)
T PRK14908 161 ITYGIERIAMYLQKVNHFKDI 181 (1000)
T ss_pred eeccHHHHHHHHhCCCeeeee
Confidence 889999999999999999996
No 31
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=91.61 E-value=1.5 Score=47.73 Aligned_cols=173 Identities=21% Similarity=0.337 Sum_probs=96.0
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCCCCCCcccccccccccccccccC-CCCCC
Q 001932 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-GKHND 137 (995)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~-f~G~~~p~~~~~~~~r~~~~QkCiR~g-GkhnD 137 (995)
-.+|-.+--+|..++|..++-++.+= -|--.|-|. |+..--|. | -+++-+|+|.|.. |+.-
T Consensus 2 fQ~iI~~Lq~fW~~~GC~i~qPyD~E-----------vGAGT~hPaTflr~Lgpe-p----w~vAYVqPsrRP~DGRYG- 64 (279)
T cd00733 2 FQDLILKLQKFWASQGCLIIQPYDME-----------VGAGTFHPATFLRALGPE-P----WNVAYVEPSRRPTDGRYG- 64 (279)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcccc-----------cccccCCHHHHHHhcCCC-c----ceeccccCCCCCCCCCcC-
Confidence 35677788899999999998776652 234477884 33322221 1 3679999999972 1111
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhhCCCCC
Q 001932 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 217 (995)
Q Consensus 138 l~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~~~~~~ 217 (995)
+|.-+ -.||.=|..+=-=|-.+ ..+.=.+-| +.+||+|. +|
T Consensus 65 -eNPNR-Lq~y~QfQViiKPsP~n-----iQelYL~SL-~~lGid~~-------------------------------~h 105 (279)
T cd00733 65 -ENPNR-LQHYYQFQVIIKPSPDN-----IQELYLESL-EALGINPK-------------------------------EH 105 (279)
T ss_pred -CCchh-hhhheeeEEEECCCCcc-----HHHHHHHHH-HHhCCCcc-------------------------------cc
Confidence 22222 23444444432222221 111111112 23555553 33
Q ss_pred cccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccccCCCCccccCCCCccccCchHH
Q 001932 218 VLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (995)
Q Consensus 218 i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDTGmGlE 297 (995)
=+|| .+|| ||-=.-|--|===|+--| | +||=- |+=|.+ ..| + ++....+.-=+|||
T Consensus 106 DIRF-VEDn-WEsPTLGAwGLGWEVWld---G--------------MEITQ--FTYFQQ-vGG-i-~~~pv~~EiTYGLE 161 (279)
T cd00733 106 DIRF-VEDN-WESPTLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQ-VGG-I-PCKPISVEITYGLE 161 (279)
T ss_pred CeeE-eecC-CCCCcccccccccEEEEC---C--------------eeeee--eeeeee-eCC-e-eccccceeeehhHH
Confidence 3455 3455 543222555655566644 1 66653 332333 333 3 45555677789999
Q ss_pred HHHHHHhCCCCCccc
Q 001932 298 RLTSILQNKMSNYDT 312 (995)
Q Consensus 298 Rl~~vlqg~~snydt 312 (995)
|||+.+||+.++||.
T Consensus 162 RiamylQ~vd~v~dl 176 (279)
T cd00733 162 RIAMYLQGVDNVYDI 176 (279)
T ss_pred HHHHHHhCCCceecc
Confidence 999999999999996
No 32
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=88.62 E-value=6 Score=48.45 Aligned_cols=97 Identities=15% Similarity=0.197 Sum_probs=60.5
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEeeCCCCeEEEEEecCCCcccccCCCHHHHHHHHhhccCCCCCCCC
Q 001932 886 PFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGK 965 (995)
Q Consensus 886 ~~iv~~~~~~~d~~~L~~~a~~l~~~~~~~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~A~~l~k~v~~~lgGkGG~Gk 965 (995)
+++|.. .++.....+-.+|..+.+..+.++++++..++ +.+ -+...+ ..++|+.++++.+...++++|| |=
T Consensus 325 ~~~v~~-~~~~~~Gv~GivA~rl~~~~~kP~ivls~~~~-~~~---kgS~Rs---~~g~nl~~~l~~~~~~~l~~~G-GH 395 (539)
T TIGR00644 325 SVIVVA-GENWHPGVLGIVASRLAETFNKPVIVLAIDEG-KGA---KGSARS---ISGIDLYDLLSELREALFLKFG-GH 395 (539)
T ss_pred cEEEEE-eCCCCCchHHHHHHHHHHHHCCCEEEEEEcCC-ceE---EEeecc---CCCCcHHHHHHHHHHhhccccC-Ch
Confidence 444432 22444556777788888866778888876422 111 111121 2479999999998885677776 53
Q ss_pred CCCcccccCCcCCHHHHHHHHHHHHHh
Q 001932 966 GGLASGQGTDAAQVTPAMDLAAEFAAM 992 (995)
Q Consensus 966 ~~~AQG~g~~~~~l~~al~~a~~~~~~ 992 (995)
.+|=|-.-..++++++.+.+.+++.+
T Consensus 396 -~~AaG~~i~~~~~~~f~~~l~~~~~~ 421 (539)
T TIGR00644 396 -AMAAGLTLKRENLEEFREKLEEKFKK 421 (539)
T ss_pred -HHcCeeEEcHHHHHHHHHHHHHHHHh
Confidence 44544334667888888888777654
No 33
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=88.54 E-value=2.9 Score=45.28 Aligned_cols=169 Identities=21% Similarity=0.349 Sum_probs=96.8
Q ss_pred CCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCCCCCCcccccccccccccccccCCC
Q 001932 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAGGK 134 (995)
Q Consensus 56 ~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~-f~G~~~p~~~~~~~~r~~~~QkCiR~gGk 134 (995)
++|+-..|--+--+|..++|..++-++-+ -.|--.|-|+ ||..--|. | =.|+-+|+|-|.+
T Consensus 3 ~~~~fQ~~IltLq~yW~~qGC~i~QpyD~-----------evGAGT~hPaTfLralGpe-P----w~aAYVqPSRRP~-- 64 (298)
T COG0752 3 KKLTFQGLILTLQNYWAEQGCTILQPYDM-----------EVGAGTFHPATFLRALGPE-P----WNAAYVQPSRRPT-- 64 (298)
T ss_pred ccccHHHHHHHHHHHHHHcCCEEeccccc-----------ccccCcCChHHHHHhcCCC-c----cceeeeccCCCCC--
Confidence 46888899999999999999999876644 1344478896 44332221 1 2578899999973
Q ss_pred CCCC---CCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHh
Q 001932 135 HNDL---DDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 211 (995)
Q Consensus 135 hnDl---~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~ 211 (995)
|= +|.-+=.+||-| .. .++=+|+++ -++.++
T Consensus 65 --DGRYGenPNRlq~yyQf-QV------------------------ilKPsP~Ni-------------------QeLYL~ 98 (298)
T COG0752 65 --DGRYGENPNRLQHYYQF-QV------------------------IIKPSPDNI-------------------QELYLG 98 (298)
T ss_pred --CCCCCCCchhhhhheeE-EE------------------------EecCCCccH-------------------HHHHHH
Confidence 31 222222222322 22 122223322 111111
Q ss_pred ----h--CCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccccCCCCccccC
Q 001932 212 ----F--LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPL 285 (995)
Q Consensus 212 ----~--~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~L 285 (995)
+ =|.+|=+||= +|| ||-=.-|--|--=|+--| | +||=- |+=|.+ ..| +. +
T Consensus 99 SL~~lGid~~~HDIRFV-EDn-WE~PTlGawGlGWEVWld---G--------------MEvTQ--FTYFQQ-vGG-ie-c 154 (298)
T COG0752 99 SLEALGIDPLEHDIRFV-EDN-WENPTLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQ-VGG-LE-C 154 (298)
T ss_pred HHHHcCCChhhcceeee-ccC-CCCCcccccccceeEEEc---C--------------eeeee--eehhhh-hCC-ee-c
Confidence 1 2344556663 455 654223666655666644 1 56543 333333 333 32 3
Q ss_pred CCCccccCchHHHHHHHHhCCCCCccc
Q 001932 286 PAKHVDTGLGFERLTSILQNKMSNYDT 312 (995)
Q Consensus 286 p~~~IDTGmGlERl~~vlqg~~snydt 312 (995)
..-.+.--+||||||+.+||+.++||.
T Consensus 155 ~pV~~EITYGlERlAmYiQ~vdnVydl 181 (298)
T COG0752 155 KPVSGEITYGLERLAMYIQGVDNVYDL 181 (298)
T ss_pred cceeeeeehhHHHHHHHHhCccceeEE
Confidence 334566679999999999999999996
No 34
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=83.90 E-value=6 Score=47.11 Aligned_cols=99 Identities=15% Similarity=0.241 Sum_probs=57.5
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc------cccccCCCCCCC----ccccccccccccccccc
Q 001932 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADPNT----QLSKLTRACNTQKCIRA 131 (995)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~f------k~~f~G~~~p~~----~~~~~~r~~~~QkCiR~ 131 (995)
.|-+.+=+||.++|-..|..--|++. ++ -.|-..| ++.+|-+++--+ -.+.+.|+-...+|+|.
T Consensus 138 ~i~~~iR~ff~~~gf~EV~TP~L~~~-~~-----eg~~~~f~v~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~ 211 (428)
T TIGR00458 138 GVLESVREFLAEEGFIEVHTPKLVAS-AT-----EGGTELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRA 211 (428)
T ss_pred HHHHHHHHHHHHCCCEEEeCCceecC-CC-----CCCcceeeeEecCCcEEECcCHHHHHHHHHhcccCcEEEEeccccc
Confidence 45556778999999988864445431 10 0122222 334444332100 01235788888999997
Q ss_pred CCCCCCCCCCCCCCCccccccccccc-ccccccHHHHHHHHHHHch
Q 001932 132 GGKHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLT 176 (995)
Q Consensus 132 gGkhnDl~~VG~t~rH~TfFEMlGn~-SfgdYfK~eai~~awe~lt 176 (995)
. +.+ |.||.+=|-||--. +|.|| ++.++.+=+++.
T Consensus 212 E-------~~~-t~rHl~EFt~lE~e~a~~~~--~dlm~~~e~li~ 247 (428)
T TIGR00458 212 E-------EHN-THRHLNEATSIDIEMAFEDH--HDVMDILEELVV 247 (428)
T ss_pred C-------CCC-CccchheeeEeeeeeccCCH--HHHHHHHHHHHH
Confidence 3 333 56999888888544 77787 556655544443
No 35
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=83.60 E-value=4 Score=45.55 Aligned_cols=101 Identities=17% Similarity=0.274 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCccc-CCCC-Cccccccccccc---cccccCCCCCCC----ccccccccccccccccc
Q 001932 61 TKVRDTFFKFFEDKNHVNWKSSPVVP-VNDP-TLLFANAGMNQY---KPIFLGTADPNT----QLSKLTRACNTQKCIRA 131 (995)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp-~~d~-tllftnAGm~~f---k~~f~G~~~p~~----~~~~~~r~~~~QkCiR~ 131 (995)
++|-+.+-+||.++|-..|..--+.+ ..++ .-.|.-. .| ++++|-+++--. -.+.+.|+-...+|.|.
T Consensus 5 s~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~---~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~ 81 (269)
T cd00669 5 SKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVK---YNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFRN 81 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEee---ecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEecceeC
Confidence 56888899999999999885444432 1111 1112110 01 223333221000 00124677778899995
Q ss_pred CCCCCCCCCCCCCCCcccccccccc-cccccccHHHHHHHHHHHc
Q 001932 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELL 175 (995)
Q Consensus 132 gGkhnDl~~VG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awe~l 175 (995)
| +.|.||+.=|-||-- .+|.|| +|.++.+=+++
T Consensus 82 -----e----~~~~~hl~EF~~le~e~~~~~~--~dvm~~~e~lv 115 (269)
T cd00669 82 -----E----DLRARHQPEFTMMDLEMAFADY--EDVIELTERLV 115 (269)
T ss_pred -----C----CCCCCcccceeEEEEEEecCCH--HHHHHHHHHHH
Confidence 4 347799999999843 467775 34444444433
No 36
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=83.06 E-value=11 Score=45.04 Aligned_cols=104 Identities=16% Similarity=0.259 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCC-CCCc-cccc-ccc-----ccc-cccccCCCCC---CCcccccccccccccc
Q 001932 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVN-DPTL-LFAN-AGM-----NQY-KPIFLGTADP---NTQLSKLTRACNTQKC 128 (995)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~-d~tl-lftn-AGm-----~~f-k~~f~G~~~p---~~~~~~~~r~~~~QkC 128 (995)
++|-+.+=+||.++|...|..--+.+.. ++.. +|.- +-+ +-| ++++|-+++- .--.+.+.|+-..-+|
T Consensus 137 s~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~i~~~ 216 (450)
T PRK03932 137 NTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPT 216 (450)
T ss_pred HHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHHHhccCCeEEeeec
Confidence 4566778899999999988654444311 1110 1211 101 112 3344433321 0001235788888899
Q ss_pred cccCCCCCCCCCCCCCCCcccccccccc-cccccccHHHHHHHHHHH
Q 001932 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWEL 174 (995)
Q Consensus 129 iR~gGkhnDl~~VG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awe~ 174 (995)
.|.. + ..|.||..=|-||-- .+|.|| +|.++.+=++
T Consensus 217 FR~E-------~-~~t~rHl~EFt~lE~e~~~~~~--~~~m~~~e~l 253 (450)
T PRK03932 217 FRAE-------N-SNTRRHLAEFWMIEPEMAFADL--EDNMDLAEEM 253 (450)
T ss_pred cccC-------C-CCCccccccccccceEEeccCH--HHHHHHHHHH
Confidence 9973 2 236799888888754 477776 4444444333
No 37
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=82.33 E-value=8.9 Score=43.53 Aligned_cols=114 Identities=17% Similarity=0.256 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc-----------cccccCCCCC---C-Cccccccccccc
Q 001932 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY-----------KPIFLGTADP---N-TQLSKLTRACNT 125 (995)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~f-----------k~~f~G~~~p---~-~~~~~~~r~~~~ 125 (995)
+.|-+.+-+||.++|-..|..--+.+.. -+.+|..+| ++.+|-+++- . -=.+.+.|+-..
T Consensus 5 s~i~~~ir~~f~~~gF~EV~TP~l~~~~-----~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfei 79 (304)
T TIGR00462 5 ARLLAAIRAFFAERGVLEVETPLLSPAP-----VTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQI 79 (304)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEecCC-----CCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEE
Confidence 4677888899999999988665555421 112233333 3444444321 0 001236788888
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccccccc-cccccccHHHHHHHHHHHchhccC-CCCCceEEEE
Q 001932 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLTKVYR-LPADRLYATY 190 (995)
Q Consensus 126 QkCiR~gGkhnDl~~VG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awe~lt~~l~-l~~~rL~vT~ 190 (995)
-||.|+. .+ +.||.+=|-||-- ++|.|| ++.++..=+++..++. +.+.--.+||
T Consensus 80 gp~FRaE-------~~--~~rHl~EFtmLE~e~~~~d~--~d~m~~~e~li~~i~~~~~~~~~~it~ 135 (304)
T TIGR00462 80 CKVFRNG-------ER--GRRHNPEFTMLEWYRPGFDY--HDLMDEVEALLQELLGDPFAPWERLSY 135 (304)
T ss_pred cCceeCC-------CC--CCCcccHHHhHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCcEEEEH
Confidence 9999983 34 3699999999833 355565 4566666666655443 2222223576
No 38
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=81.43 E-value=7.8 Score=41.53 Aligned_cols=106 Identities=20% Similarity=0.237 Sum_probs=66.0
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccc--------ccccc----------------------ccccCCC
Q 001932 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAG--------MNQYK----------------------PIFLGTA 110 (995)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAG--------m~~fk----------------------~~f~G~~ 110 (995)
+.|.+.+.+.|++.|...|..-.+.|.+ +|...| |..|. .++....
T Consensus 6 ~~l~~~~~~~~~~~G~~ei~~P~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 6 RALERFLDDRMAEYGYQEILFPFLAPTV----LFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEcCHH----HHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 4688888999999999888776676632 111111 22221 1122211
Q ss_pred CC--CCcccccccccccccccccCCCCCCCCCC-CCCCCccccccccccccccc-----ccHHHHHHHHHHHchhccCCC
Q 001932 111 DP--NTQLSKLTRACNTQKCIRAGGKHNDLDDV-GKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLTKVYRLP 182 (995)
Q Consensus 111 ~p--~~~~~~~~r~~~~QkCiR~gGkhnDl~~V-G~t~rH~TfFEMlGn~Sfgd-----YfK~eai~~awe~lt~~l~l~ 182 (995)
.+ +-| -|.+-+.+|.|. ..... |. .|-+- |.|.|-+.||+ ..-.|.++.++++|.+ ||+|
T Consensus 82 ~~~~~lP----~r~~~~g~~fR~-----E~~~~~gl-~R~re-F~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~-lgl~ 149 (235)
T cd00670 82 LSYRALP----LRLDQIGPCFRH-----EPSGRRGL-MRVRE-FRQVEYVVFGEPEEAEEERREWLELAEEIARE-LGLP 149 (235)
T ss_pred ccchhcC----eeeeeecccccC-----CCCCCCCC-hhhee-eeeceEEEEcCHHHHHHHHHHHHHHHHHHHHH-cCCc
Confidence 11 112 378889999995 43332 22 24444 79999999984 4556889999999954 7885
No 39
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=80.77 E-value=0.33 Score=59.40 Aligned_cols=112 Identities=24% Similarity=0.239 Sum_probs=72.6
Q ss_pred CCCCCceEEEEEC--CCCcCCCCCcHHHHH-HHH---hh--CCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCC
Q 001932 180 RLPADRLYATYFG--GDEKAGLAPDNEARD-IWL---KF--LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRD 251 (995)
Q Consensus 180 ~l~~~rL~vT~~~--~~~~~~~~~D~E~~~-iW~---~~--~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~ 251 (995)
|.+.-.+ |+|+ |.-.-|-.--+||-. .|. +. +|++||.- ....|+ |.||+|=|.++ |+
T Consensus 77 G~t~rH~--T~FEMlGn~sfgdYfK~eai~~awe~lt~~l~i~~~~l~v---t~~~~d----~ea~~~w~~~~---g~-- 142 (552)
T PF01411_consen 77 GRTGRHH--TFFEMLGNFSFGDYFKEEAIEYAWEFLTEVLGIPPDRLYV---TVFEWD----GEAGEIWEKIV---GG-- 142 (552)
T ss_dssp TTSSS----SEEEEEEEEEECSS-HHHHHHHHHHHHHCTTT--GGGEEE---EEECCE----CCCCCCCCECC---TT--
T ss_pred CCCceEe--eehhhccccccccccHHHHHHHHHHHHHhhcCCChHhEEE---EEeCCc----hhHHHHHHHhc---CC--
Confidence 4444444 6665 221222234456555 343 12 89988875 333342 48999998873 22
Q ss_pred CCCCCCCCCCCeeEEeeeec---cccccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHH
Q 001932 252 AASLVNNDDPTCIEIWNIVF---IQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIF 319 (995)
Q Consensus 252 ~~~~~~~~~~~~lEiwNlVF---mq~~~~~~g~l~~Lp~~~IDTGmGlERl~~vlqg~~snydtDlf~pli 319 (995)
.|.-+++| |+|....++ ....|..-||+|+|+||..|..++.++.|+. .|..|.
T Consensus 143 ------------~~~~i~~~~~~~nfw~~g~~-gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~-~~~eiw 199 (552)
T PF01411_consen 143 ------------PEERILVFGKKDNFWEMGDT-GPCGPCSEIFYDRGEERGCWDSQGTPTCDDD-RFLEIW 199 (552)
T ss_dssp ------------ECCCEEEE-CCEEEEESSTS-EEEEEEEEEEEEEECCCHHHHHHSTSSHHHH-HECCCC
T ss_pred ------------CHHHeEecCCCCceEECCCC-CCCCCCEEEEECCCcccCccccccccccccc-cHHHHH
Confidence 67788899 999976554 5789999999999999999999999997775 555543
No 40
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=80.55 E-value=0.85 Score=49.85 Aligned_cols=172 Identities=23% Similarity=0.355 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCCCCCCcccccccccccccccccC-CCCCCC
Q 001932 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-GKHNDL 138 (995)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~-f~G~~~p~~~~~~~~r~~~~QkCiR~g-GkhnDl 138 (995)
.+|-.+--+|..++|..++.++.+= -|--.|-|. |+..--|. | -+++-+|+|.|.. |+.-
T Consensus 2 Q~iI~~Lq~fW~~~GC~i~qPyD~e-----------vGAGT~~P~Tflr~Lgpe-p----w~vaYVqPsrRP~DGRYG-- 63 (284)
T PF02091_consen 2 QDIILTLQKFWADQGCIILQPYDIE-----------VGAGTFHPATFLRALGPE-P----WNVAYVQPSRRPTDGRYG-- 63 (284)
T ss_dssp HHHHHHHHHHHHCTT-EE----SS-------------SSGGGSHHHHTTTSSSS------EEEEEEEEEE-GGG--TT--
T ss_pred HHHHHHHHHHHHHCCCEEECCcccc-----------cccccCCHHHHHHhcCCC-C----ccccccccCCCCCCCccC--
Confidence 3566677889999999998877652 244477774 44333331 1 4789999999972 1111
Q ss_pred CCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhhCCCCCc
Q 001932 139 DDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRV 218 (995)
Q Consensus 139 ~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~~~~~~i 218 (995)
+|.-+=- ||.=|..+=-=|-++ ..+.=.+-| +.+||++.. |=
T Consensus 64 eNPNRLq-~y~QfQVilKPsP~n-----iq~lYL~SL-~~lGId~~~-------------------------------hD 105 (284)
T PF02091_consen 64 ENPNRLQ-HYYQFQVILKPSPDN-----IQELYLESL-EALGIDPKE-------------------------------HD 105 (284)
T ss_dssp TSSS--S-EEEEEEEEEES--TT-----HHHHHHHHH-HHCT--CCC-------------------------------S-
T ss_pred CCchHhh-hhheeEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------------cc
Confidence 3333333 333344332222221 111111222 235555543 33
Q ss_pred ccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccccCCCCccccCCCCccccCchHHH
Q 001932 219 LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFER 298 (995)
Q Consensus 219 ~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDTGmGlER 298 (995)
+|| .+|| |+-=.-|--|-==|+--| | +||=-.-+ |.+ ..| + ++..-.+.-=+||||
T Consensus 106 IRF-VEDn-WEsPtLGAwGlGWEVWld---G--------------MEITQfTY--FQQ-vGG-i-~~~pv~~EITYGLER 161 (284)
T PF02091_consen 106 IRF-VEDN-WESPTLGAWGLGWEVWLD---G--------------MEITQFTY--FQQ-VGG-I-DCKPVSVEITYGLER 161 (284)
T ss_dssp EEE-EEE--EEETTTTEEEEEEEEEET---T--------------CEEEEEEE--EEE-ETT-E-E-SS--EEEEEEHHH
T ss_pred eeE-eecC-CCCCcccccccccEEEEC---C--------------EEEEEeee--eee-eCC-c-cccccceehhhhHHH
Confidence 444 2555 543112555544555543 1 67654332 332 333 3 466667788899999
Q ss_pred HHHHHhCCCCCccc
Q 001932 299 LTSILQNKMSNYDT 312 (995)
Q Consensus 299 l~~vlqg~~snydt 312 (995)
||+.+||+.+.||.
T Consensus 162 iamylQ~vdnv~dl 175 (284)
T PF02091_consen 162 IAMYLQGVDNVYDL 175 (284)
T ss_dssp HHHHHCT-SSGGGS
T ss_pred HHHHHhCCCeeEee
Confidence 99999999999997
No 41
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=76.64 E-value=2.7 Score=40.81 Aligned_cols=25 Identities=28% Similarity=0.520 Sum_probs=21.2
Q ss_pred HHHHHHHchhccCCCCCceEEEEEC
Q 001932 168 IEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 168 i~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
-+---++|+++||||++|+||.|+.
T Consensus 78 s~~i~~~l~~~LgIp~dRiYI~f~d 102 (113)
T PTZ00450 78 TPRITAAITKECGIPAERIYVFYYS 102 (113)
T ss_pred HHHHHHHHHHHcCCCcccEEEEEEc
Confidence 3455688999999999999999973
No 42
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=75.05 E-value=2.8 Score=50.76 Aligned_cols=101 Identities=16% Similarity=0.313 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc--------cccccCCCCCCC---c-ccccccccccccc
Q 001932 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY--------KPIFLGTADPNT---Q-LSKLTRACNTQKC 128 (995)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~f--------k~~f~G~~~p~~---~-~~~~~r~~~~QkC 128 (995)
+.|-+.+=+||.++|-..|..--|.+.. ..|..-+| ++.||-.++--+ - .+.+.|+-..-+|
T Consensus 176 s~i~~~iR~fl~~~gF~EVeTP~L~~~~------gga~a~pF~t~~~~~~~~~yLriSpELylKrlivgG~~rVfeIg~~ 249 (496)
T TIGR00499 176 SKIIKAIRRFLDDRGFIEVETPMLQVIP------GGANARPFITHHNALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRN 249 (496)
T ss_pred HHHHHHHHHHHHHCcCEEEeCCeeecCC------CCccceeEEeecccCCCceEEecCHHHHHHHHHhCCCCceEEEecc
Confidence 3566677789999999988554444421 11222223 334454432100 0 1235777788899
Q ss_pred cccCCCCCCCCCCCCCCCcccccccccc-cccccc-----cHHHHHHHHHHHch
Q 001932 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDY-----FKNEAIEWAWELLT 176 (995)
Q Consensus 129 iR~gGkhnDl~~VG~t~rH~TfFEMlGn-~SfgdY-----fK~eai~~awe~lt 176 (995)
+|.. .+ +.||..=|-||-- ++|.|| +-++-|..++.-+.
T Consensus 250 FRnE-------~~--~~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l~ 294 (496)
T TIGR00499 250 FRNE-------GV--DTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELL 294 (496)
T ss_pred eecC-------CC--CCcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 9973 33 4599999999865 577887 34555665555443
No 43
>KOG1759 consensus Macrophage migration inhibitory factor [Defense mechanisms]
Probab=69.85 E-value=4.7 Score=39.10 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.5
Q ss_pred HHHHHchhccCCCCCceEEEEEC
Q 001932 170 WAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 170 ~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
--.|+|.++|+|||+|+|++||.
T Consensus 79 ~l~~il~~~L~l~~~rv~I~f~d 101 (115)
T KOG1759|consen 79 ALTEILEKELSLDPDRVYIKFYD 101 (115)
T ss_pred HHHHHHHHHhCCCCCeEEEEEec
Confidence 45689999999999999999984
No 44
>PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a domain presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C where X can be any amino acid, and numbers in brackets indicate the number of residues. The two position can be either His or Cys. This domain is found in the human transcriptional repressor NK-X1, a repressor of HLA-DRA transcription; the Drosophila shuttle craft protein, which plays an essential role during the late stages of embryonic neurogenesis; and a yeast hypothetical protein YNL023C. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.96 E-value=3.4 Score=27.90 Aligned_cols=9 Identities=56% Similarity=1.678 Sum_probs=7.6
Q ss_pred CCCCcCcee
Q 001932 233 TGPCGPCSE 241 (995)
Q Consensus 233 ~GpcGPcsE 241 (995)
.|||+||++
T Consensus 12 ~G~C~pC~~ 20 (20)
T PF01422_consen 12 PGPCPPCPQ 20 (20)
T ss_pred CCcCCCCCC
Confidence 599999974
No 45
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=61.74 E-value=8.1 Score=37.29 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
|++-.+---++|.+.||+||+|+||.+++
T Consensus 74 k~~l~~~i~~~l~~~lgi~~~rv~I~f~~ 102 (116)
T PTZ00397 74 NSSIAAAITKILASHLKVKSERVYIEFKD 102 (116)
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55666667789999999999999999875
No 46
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=60.19 E-value=6.9 Score=45.92 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=54.6
Q ss_pred ccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhh----hhhhhhh---eeee
Q 001932 289 HVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVV----ADHIRTL---SFAI 361 (995)
Q Consensus 289 ~IDTGmGlERl~~vlqg~~snydtDlf~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rvi----aDH~R~~---~f~i 361 (995)
.|+||-||=-+-++-.|..+.|-..+|.|+.+...++....+.+.++..- ++-++-..++ ||-+-+- +=+|
T Consensus 72 digtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vI--nkrStev~vg~~~RadI~v~e~fdtEli 149 (636)
T KOG1501|consen 72 DIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVI--NKRSTEVKVGGSSRADIAVREDFDTELI 149 (636)
T ss_pred EccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeee--ccccceeeecCcchhhhhhHhhhhhhhh
Confidence 58899999999999999999999999999999999987665554333210 0111111222 3333333 3378
Q ss_pred cCCCccCCC
Q 001932 362 ADGSCPGNE 370 (995)
Q Consensus 362 ~DG~~Psn~ 370 (995)
..|++||=+
T Consensus 150 geGalps~q 158 (636)
T KOG1501|consen 150 GEGALPSLQ 158 (636)
T ss_pred ccccchhHH
Confidence 899998843
No 47
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=59.00 E-value=13 Score=44.45 Aligned_cols=19 Identities=42% Similarity=0.560 Sum_probs=15.8
Q ss_pred ccccCchHHHHHHHHhCCC
Q 001932 289 HVDTGLGFERLTSILQNKM 307 (995)
Q Consensus 289 ~IDTGmGlERl~~vlqg~~ 307 (995)
++==|||+||||++.-|.+
T Consensus 317 V~AFGIGVERlAMi~ygi~ 335 (533)
T TIGR00470 317 VMNLGLGVERLAMILYGYE 335 (533)
T ss_pred eEEEEecHHHHHHHHhCCc
Confidence 3667999999999998743
No 48
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=54.28 E-value=9.8 Score=36.73 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=18.3
Q ss_pred HHHHHHchhccCCCCCceEEEEEC
Q 001932 169 EWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 169 ~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
+---+||.++||||++|+||.|+.
T Consensus 77 ~~i~~~l~~~LgIp~~Riyi~f~d 100 (114)
T PF01187_consen 77 AAITEFLEEELGIPPDRIYINFHD 100 (114)
T ss_dssp HHHHHHHHHHHT--GGGEEEEEEE
T ss_pred HHHHHHHHHHhCCCcCceEEEEEE
Confidence 334578999999999999999974
No 49
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=52.92 E-value=30 Score=41.94 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=72.4
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccccccccccc-cccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCC
Q 001932 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAG 198 (995)
Q Consensus 120 ~r~~~~QkCiR~gGkhnDl~~VG~t~rH~TfFEMlGn~Sfg-dYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~ 198 (995)
-|..+..+|.| ||=.+ ..|+-.|.=++-+-+| +.=-.+-+..+-+|+.. +|+..=|..-+||.
T Consensus 358 ~k~fsigrVfR-----~d~~D----atH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~-lG~~~~RfrP~yfP------ 421 (494)
T PTZ00326 358 KKYFSIDRVFR-----NETLD----ATHLAEFHQVEGFVIDRNLTLGDLIGTIREFFRR-IGITKLRFKPAFNP------ 421 (494)
T ss_pred ceEEecCCEec-----CCCCC----CCcCceeEEEEEEEEeCCCCHHHHHHHHHHHHHh-cCCCceEEecCCCC------
Confidence 47788889999 46433 3444333322222222 11124678888888865 58865566556653
Q ss_pred CCCcHHHHHHHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeecccccc-C
Q 001932 199 LAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNR-E 277 (995)
Q Consensus 199 ~~~D~E~~~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~-~ 277 (995)
| | =|+-||+..+.+ +.+||||-|.=..+=+- .
T Consensus 422 ----------------------f-----------T---EPS~Ev~v~~~~-----------~gkWIEIgg~Gm~rpevL~ 454 (494)
T PTZ00326 422 ----------------------Y-----------T---EPSMEIFGYHPG-----------LKKWVEVGNSGIFRPEMLR 454 (494)
T ss_pred ----------------------C-----------C---CCeeEEEEEecC-----------CCcEEEEeCcCccCHHHHH
Confidence 1 2 357898865432 23589999875544111 1
Q ss_pred CCCccccCCCCccccCchHHHHHHHHhCCCC
Q 001932 278 SDGSLKPLPAKHVDTGLGFERLTSILQNKMS 308 (995)
Q Consensus 278 ~~g~l~~Lp~~~IDTGmGlERl~~vlqg~~s 308 (995)
.-| + |=+...+==||||||+|++.-|.+.
T Consensus 455 ~~G-i-~~~~~~~A~GlGleRlaMi~ygi~D 483 (494)
T PTZ00326 455 PMG-F-PEDVTVIAWGLSLERPTMIKYGIKN 483 (494)
T ss_pred hcC-C-CCcceEEEEEecHHHHHHHHhCCcH
Confidence 112 2 1122356779999999999987543
No 50
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=52.07 E-value=15 Score=42.32 Aligned_cols=175 Identities=21% Similarity=0.255 Sum_probs=92.9
Q ss_pred ChHHHHHHHHHhhhhCCCeeecCCCcc-----------c-----CCCCCccccccccccccccccCC------------C
Q 001932 59 PATKVRDTFFKFFEDKNHVNWKSSPVV-----------P-----VNDPTLLFANAGMNQYKPIFLGT------------A 110 (995)
Q Consensus 59 ~~~eiR~~Fl~fF~~~gH~~v~s~slv-----------p-----~~d~tllftnAGm~~fk~~f~G~------------~ 110 (995)
...++.+...++|.+-|.+.+...-+- | |+-.+.+|.+..-. | ..|-+ .
T Consensus 112 pl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~--~-~lLRTHTs~vq~R~l~~~ 188 (335)
T COG0016 112 PLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDRE--K-LLLRTHTSPVQARTLAEN 188 (335)
T ss_pred hHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEcCCCC--c-eeecccCcHhhHHHHHhC
Confidence 467788888888888999887655332 2 22223344443221 1 11110 0
Q ss_pred CCCCcccccccccccccccccCCCCCCCCCCCCCCCccccc-ccc-----cccccccccHHHHHHHHHHHchhccCCC-C
Q 001932 111 DPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFF-EML-----GNWSFGDYFKNEAIEWAWELLTKVYRLP-A 183 (995)
Q Consensus 111 ~p~~~~~~~~r~~~~QkCiR~gGkhnDl~~VG~t~rH~TfF-EMl-----Gn~SfgdYfK~eai~~awe~lt~~l~l~-~ 183 (995)
.| .| -|+.+..+|.| ||-. |..|.-.| .+= -|.||.| -...--+|+.+-+|.+ +
T Consensus 189 ~~-~P----~k~~~~grvyR-----~D~~----DaTHs~~FhQiEGlvvd~~~s~~~-----Lkg~L~~f~~~~fg~~~~ 249 (335)
T COG0016 189 AK-IP----IKIFSPGRVYR-----NDTV----DATHSPEFHQIEGLVVDKNISFAD-----LKGTLEEFAKKFFGEDVK 249 (335)
T ss_pred CC-CC----ceEecccceec-----CCCC----CcccchheeeeEEEEEeCCccHHH-----HHHHHHHHHHHhcCCCcc
Confidence 11 13 48899999999 5744 34554444 333 4666664 2223335555555555 4
Q ss_pred CceEEEEECCCCcCCCCCcHHHHHHHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCe
Q 001932 184 DRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTC 263 (995)
Q Consensus 184 ~rL~vT~~~~~~~~~~~~D~E~~~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~ 263 (995)
=|.--+||. | | =|+-|++..+.+ |..|
T Consensus 250 vRfrpsyFP-----------------------------------F----T---EPS~Evdv~~~~-----------~~~W 276 (335)
T COG0016 250 VRFRPSYFP-----------------------------------F----T---EPSAEVDVYCPG-----------CGGW 276 (335)
T ss_pred eEeecCCCC-----------------------------------C----C---CCeEEEEEEEcC-----------CCCE
Confidence 455545552 2 3 358888865422 1458
Q ss_pred eEEeeeeccccccCCCCccccCCCCccccCchHHHHHHHHhCCCC
Q 001932 264 IEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMS 308 (995)
Q Consensus 264 lEiwNlVFmq~~~~~~g~l~~Lp~~~IDTGmGlERl~~vlqg~~s 308 (995)
|||.+.=-..=|-.....+.|-+-...==|||+||||++.-|.+.
T Consensus 277 lEi~G~Gmv~P~VL~~~G~~~~~~~GfAfGlGlERlAMLkygI~D 321 (335)
T COG0016 277 LEILGCGMVHPNVLEAVGIDPEEYSGFAFGLGLERLAMLKYGIPD 321 (335)
T ss_pred EEEecccccCHHHHHhcCCCCCcceEEEEeecHHHHHHHHhCCcH
Confidence 898864111111000001212222222569999999999988653
No 51
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=46.33 E-value=5.1e+02 Score=32.37 Aligned_cols=95 Identities=13% Similarity=0.066 Sum_probs=54.9
Q ss_pred EEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEeeCCCCeEEEEEecCCCcccccCCCHHHHHHHHhh----ccCCCCC
Q 001932 887 FCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQ----PLKGRCG 962 (995)
Q Consensus 887 ~iv~~~~~~~d~~~L~~~a~~l~~~~~~~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~A~~l~k~v~~----~lgGkGG 962 (995)
++|..-+ +-..-.+--+|..+.+..+.++++++.. +++.. -+...+. .++|+.+.++.... .+-.-||
T Consensus 355 ~ivv~~~-~wh~GViGIVAsrl~e~y~rP~ivls~~-~~g~~---kGS~RSi---~g~~l~~aL~~~~~~~~~ll~~fGG 426 (575)
T PRK11070 355 GLAMYHP-EWHQGVVGILASRIKERFHRPVIAFAPA-GDGTL---KGSGRSI---QGLHMRDALERLDTLYPGLILKFGG 426 (575)
T ss_pred EEEEEeC-CCCccHHHHHHHHHHHHHCCCEEEEEEc-CCCeE---EEEEeCC---CCCcHHHHHHHhhhcccchhhccCC
Confidence 4443333 4556678888889998667788888753 22321 2222221 36899988887542 3432333
Q ss_pred CCCCCCcccccCCcCCHHHHHHHHHHHHHh
Q 001932 963 KGKGGLASGQGTDAAQVTPAMDLAAEFAAM 992 (995)
Q Consensus 963 ~Gk~~~AQG~g~~~~~l~~al~~a~~~~~~ 992 (995)
-.+|=|-.-..++++++.+.+.+++.+
T Consensus 427 ---H~~AaG~ti~~e~l~~f~~~l~~~~~~ 453 (575)
T PRK11070 427 ---HAMAAGLSLEEDKFELFQQRFGELVTE 453 (575)
T ss_pred ---hHHhCcceeCHHHHHHHHHHHHHHHHH
Confidence 334433333667888877777666543
No 52
>smart00438 ZnF_NFX Repressor of transcription.
Probab=41.12 E-value=12 Score=27.07 Aligned_cols=11 Identities=45% Similarity=1.304 Sum_probs=8.9
Q ss_pred CCCCcCceeeE
Q 001932 233 TGPCGPCSEIH 243 (995)
Q Consensus 233 ~GpcGPcsEi~ 243 (995)
.|||+||.+..
T Consensus 12 ~G~C~pC~~~~ 22 (26)
T smart00438 12 PGPCPPCKQXX 22 (26)
T ss_pred CCcCcCccccc
Confidence 49999999654
No 53
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=40.35 E-value=24 Score=42.61 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=27.4
Q ss_pred cccccCCCCcCCCCChHHHHHHHHHhhhhCCCeeecCCCc
Q 001932 45 VAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPV 84 (995)
Q Consensus 45 ~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~sl 84 (995)
+.|.|.+.+.-..=...++|+.+-++|.+-|.+.++..|.
T Consensus 208 ~~a~g~~~~~G~~HPl~~~~~ei~~if~~mGF~e~~~g~~ 247 (492)
T PLN02853 208 FNALGAPPEGGHLHPLLKVRQQFRKIFLQMGFEEMPTNNF 247 (492)
T ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCEEecCCCC
Confidence 3333333333344458899999999999999999964443
No 54
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=40.02 E-value=37 Score=41.84 Aligned_cols=98 Identities=19% Similarity=0.347 Sum_probs=59.4
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc------cccccCCCCC---CCcc-ccccccccccccccc
Q 001932 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADP---NTQL-SKLTRACNTQKCIRA 131 (995)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~f------k~~f~G~~~p---~~~~-~~~~r~~~~QkCiR~ 131 (995)
.|-+.|=+||.++|...|..-.|+... +..|-+.| ++++|-+++- .--. +.+.|+-...+|+|+
T Consensus 218 ~i~~~~R~fl~~~gFiEV~TP~L~~~~------~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRa 291 (550)
T PTZ00401 218 RVCQYFRQFLIDSDFCEIHSPKIINAP------SEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRS 291 (550)
T ss_pred HHHHHHHHHHHHCCCEEEeCCccccCC------CCccccccccccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeC
Confidence 566778899999999988654444311 12233334 3444544321 0001 246788888999997
Q ss_pred CCCCCCCCCCCCCCCcccccccccc-cccc-cccHHHHHHHHHHHc
Q 001932 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFG-DYFKNEAIEWAWELL 175 (995)
Q Consensus 132 gGkhnDl~~VG~t~rH~TfFEMlGn-~Sfg-dYfK~eai~~awe~l 175 (995)
|+.+ |.||++=|-||-- .+|+ +|. |.++.+=+++
T Consensus 292 -------E~s~-T~RHl~EFt~Le~E~~~~~~y~--evm~~~e~l~ 327 (550)
T PTZ00401 292 -------ENSN-THRHLTEFVGLDVEMRINEHYY--EVLDLAESLF 327 (550)
T ss_pred -------CCCC-CCCCccchhhhhhhhHhcCCHH--HHHHHHHHHH
Confidence 3443 7799999999977 7886 563 3444443333
No 55
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=37.91 E-value=16 Score=40.30 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=22.2
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcc
Q 001932 60 ATKVRDTFFKFFEDKNHVNWKSSPVV 85 (995)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slv 85 (995)
..++++.-.++|..-|...+..+++.
T Consensus 19 ~~~~~~~i~~~~~~~Gf~e~~~~~v~ 44 (247)
T PF01409_consen 19 ITKFIREIRDIFVGMGFQEVEGPEVE 44 (247)
T ss_dssp HHHHHHHHHHHHHCTTSEEESTTSEE
T ss_pred HHHHHHHHHHHHHHCCCeEeeCCeEE
Confidence 67788888889999999999987773
No 56
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=33.08 E-value=55 Score=37.48 Aligned_cols=100 Identities=23% Similarity=0.397 Sum_probs=60.3
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc------cccccCCCCC---CCcccccccccccccccc
Q 001932 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADP---NTQLSKLTRACNTQKCIR 130 (995)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~f------k~~f~G~~~p---~~~~~~~~r~~~~QkCiR 130 (995)
-+.|.+.+-+||.++|...|..-.+.+. +. .++..+| +|.||-+++- .--+..+.|+-...+|.|
T Consensus 27 rs~i~~~ir~~f~~~gf~eV~TP~l~~~-~~-----e~~~~~f~~~~~~~~~yL~~Spql~lk~l~~~~~~vf~i~~~FR 100 (322)
T cd00776 27 RSEVLRAFREFLRENGFTEVHTPKITST-DT-----EGGAELFKVSYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFR 100 (322)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceecC-CC-----CccCCccccccCCCcceecCCHHHHHHHHHHhhhhhEEeccccc
Confidence 4578889999999999999976666552 11 1344455 4455544321 000112577888899999
Q ss_pred cCCCCCCCCCCCCCCCccccccccccc-ccc-cccHHHHHHHHHHHc
Q 001932 131 AGGKHNDLDDVGKDTYHHTFFEMLGNW-SFG-DYFKNEAIEWAWELL 175 (995)
Q Consensus 131 ~gGkhnDl~~VG~t~rH~TfFEMlGn~-Sfg-dYfK~eai~~awe~l 175 (995)
.. + ..+.||+.=|-||.-. +|. || ++.++.+=++|
T Consensus 101 ~E-------~-~~~~rHl~EFtmlE~e~~~~~~~--~dlm~~~e~ll 137 (322)
T cd00776 101 AE-------K-SNTRRHLSEFWMLEAEMAFIEDY--NEVMDLIEELI 137 (322)
T ss_pred cC-------C-CCcCCCcceeeccceeeeccCCH--HHHHHHHHHHH
Confidence 73 1 2356999888888644 444 44 33444444333
No 57
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=32.56 E-value=51 Score=29.82 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHHhhcc
Q 001932 438 LLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (995)
Q Consensus 438 l~~g~~~~~~~~~~~~~~~l~g~~~f~Lydt 468 (995)
.+.++..|+++++++.++.+|-++++++|..
T Consensus 6 fEeal~~LE~IV~~LE~g~l~Leesl~lyee 36 (75)
T PRK14066 6 FETALKKLEEVVKKLEGGELSLDDSLKAFEE 36 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4566788888888898999999999999864
No 58
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.46 E-value=21 Score=41.37 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=23.9
Q ss_pred CCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHH
Q 001932 286 PAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQ 324 (995)
Q Consensus 286 p~~~IDTGmGlERl~~vlqg~~snydtDlf~pli~~i~~ 324 (995)
...-.=-||||||||+||=+-| |.-+|...=+..-+
T Consensus 293 ~~igwafglgLerLAMll~~Ip---DiRlfWs~DeRFlk 328 (436)
T KOG2783|consen 293 NYIGWAFGLGLERLAMLLFDIP---DIRLFWSFDERFLK 328 (436)
T ss_pred ceeeeeeeccHHHHHHHHhcCc---chheeeccchHHHH
Confidence 3344556999999999997765 34566655444433
No 59
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=32.08 E-value=53 Score=29.79 Aligned_cols=32 Identities=6% Similarity=0.187 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHhhcc
Q 001932 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (995)
Q Consensus 437 tl~~g~~~~~~~~~~~~~~~l~g~~~f~Lydt 468 (995)
|.+.++..|+++++++.++.+|-++++++|..
T Consensus 6 sfEeal~~LE~Iv~~LE~~~l~Leesl~lyee 37 (76)
T PRK14063 6 SFEEAISQLEHLVSKLEQGDVPLEEAISYFKE 37 (76)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45677888999999998999999999999854
No 60
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=31.30 E-value=56 Score=29.58 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHhhcc
Q 001932 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (995)
Q Consensus 437 tl~~g~~~~~~~~~~~~~~~l~g~~~f~Lydt 468 (995)
|.+.++..|+++++++.++.+|-++++++|..
T Consensus 7 sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~ 38 (75)
T PRK14064 7 TFEEAIAELETIVEALENGSASLEDSLDMYQK 38 (75)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 56677888999999998999999999999854
No 61
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=31.07 E-value=55 Score=30.03 Aligned_cols=32 Identities=9% Similarity=0.306 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHhhcc
Q 001932 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (995)
Q Consensus 437 tl~~g~~~~~~~~~~~~~~~l~g~~~f~Lydt 468 (995)
+.+.+++.|+++++++.++.+|-++++++|.-
T Consensus 8 sfEeal~~LEeIV~~LE~~~l~Lees~~lyee 39 (80)
T PRK14067 8 DFEQQLARLQEIVDALEGGDLPLEESVALYKE 39 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 55677888999999998899999999999854
No 62
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=30.62 E-value=71 Score=37.19 Aligned_cols=58 Identities=26% Similarity=0.332 Sum_probs=38.2
Q ss_pred cCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccccCCCCcccc-------CCCCccccCchHHHHHHHHhCCC
Q 001932 237 GPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP-------LPAKHVDTGLGFERLTSILQNKM 307 (995)
Q Consensus 237 GPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~-------Lp~~~IDTGmGlERl~~vlqg~~ 307 (995)
|--||+|--|.. -.++ ...-+|-|+||..- |-|+| +|.++..-|.|.||||+||.|.+
T Consensus 279 ~TQTEVyAyHPk-L~gs--~~kysdgWiEiATF----------GlYSP~ALaeY~Id~pVMNLGlGVERlaMIl~g~~ 343 (536)
T COG2024 279 GTQTEVYAYHPK-LVGS--IEKYSDGWIEIATF----------GLYSPIALAEYGIDYPVMNLGLGVERLAMILHGAD 343 (536)
T ss_pred CccceEEEeccc-cccc--ccccCCCcEEEEee----------cccChHHHHHcCCCCceeecchhHHHHHHHHhCch
Confidence 457999955521 0001 12345789999853 33444 56777778999999999998854
No 63
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=29.92 E-value=27 Score=39.21 Aligned_cols=104 Identities=14% Similarity=0.204 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCCc--cccccccccccc-cccCCCCCCC----cccccccccccccccccCC
Q 001932 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTL--LFANAGMNQYKP-IFLGTADPNT----QLSKLTRACNTQKCIRAGG 133 (995)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tl--lftnAGm~~fk~-~f~G~~~p~~----~~~~~~r~~~~QkCiR~gG 133 (995)
++|-+.+=+||.++|-..|..=-|++...+.. ..+..=- ..+. ++|-+++--+ -.+.+.|+-...+|.|.
T Consensus 5 s~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~f~~~~~~-~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~fR~-- 81 (280)
T cd00777 5 SRVIKAIRNFLDEQGFVEIETPILTKSTPEGARDFLVPSRL-HPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCFRD-- 81 (280)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCCceecccc-CCCceeecccCHHHHHHHHHhcCcCcEEEeccceeC--
Confidence 46777888999999999885444443222221 1111100 0011 1133221000 00235688888999996
Q ss_pred CCCCCCCCCCCCCccccccccccc-ccccccHHHHHHHHHHHch
Q 001932 134 KHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLT 176 (995)
Q Consensus 134 khnDl~~VG~t~rH~TfFEMlGn~-SfgdYfK~eai~~awe~lt 176 (995)
|+.+ ++||. =|-|++-- +|.|| ++.++..=+++.
T Consensus 82 -----e~~~-~~r~~-Ef~~~e~e~~~~~~--~dlm~~~e~li~ 116 (280)
T cd00777 82 -----EDLR-ADRQP-EFTQIDIEMSFVDQ--EDIMSLIEGLLK 116 (280)
T ss_pred -----CCCC-CCccc-eeEEeEeeeccCCH--HHHHHHHHHHHH
Confidence 3344 55665 78888543 77776 345554444443
No 64
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=28.91 E-value=66 Score=28.40 Aligned_cols=31 Identities=13% Similarity=0.313 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHHhhcc
Q 001932 438 LLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (995)
Q Consensus 438 l~~g~~~~~~~~~~~~~~~l~g~~~f~Lydt 468 (995)
.+.++..|+++++++.++.+|-++++.+|.-
T Consensus 3 fEe~l~~Le~Iv~~LE~~~l~Leesl~lyee 33 (67)
T TIGR01280 3 FEEALSELEQIVQKLESGDLALEEALNLFER 33 (67)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4567888999999998899999999999853
No 65
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=28.27 E-value=65 Score=29.46 Aligned_cols=32 Identities=3% Similarity=0.224 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHhhcc
Q 001932 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (995)
Q Consensus 437 tl~~g~~~~~~~~~~~~~~~l~g~~~f~Lydt 468 (995)
+.+.+++.|+++++++.++.+|-++++.||.-
T Consensus 11 sfEea~~~LEeIv~~LE~~~l~Lees~~lyee 42 (80)
T PRK00977 11 SFEEALAELEEIVTRLESGDLPLEESLAAFER 42 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 34567788888899998899999999999854
No 66
>PLN02850 aspartate-tRNA ligase
Probab=28.01 E-value=72 Score=39.23 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=53.8
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCC-CCCccccccccccc------cccccCCCCC---CC-cccccccccccccccc
Q 001932 62 KVRDTFFKFFEDKNHVNWKSSPVVPVN-DPTLLFANAGMNQY------KPIFLGTADP---NT-QLSKLTRACNTQKCIR 130 (995)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~-d~tllftnAGm~~f------k~~f~G~~~p---~~-~~~~~~r~~~~QkCiR 130 (995)
.|-+.|=+||.++|...|..--|++.. ++ |..+| ++++|-+++- .- -.+.+.|+-..-+|+|
T Consensus 230 ~i~~~~R~fl~~~gF~EV~TP~L~~~~~eg-------ga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FR 302 (530)
T PLN02850 230 QVCNLFREFLLSKGFVEIHTPKLIAGASEG-------GSAVFRLDYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFR 302 (530)
T ss_pred HHHHHHHHHHHHCCcEEEeCCccccCCCcc-------ccceeeeccCCcceecCCCHHHHHHHHHHhcCCceEEEecccc
Confidence 566778899999999888644443311 11 12233 4555654421 00 0124678888899999
Q ss_pred cCCCCCCCCCCCCCCCccccccccccc-ccc-cc
Q 001932 131 AGGKHNDLDDVGKDTYHHTFFEMLGNW-SFG-DY 162 (995)
Q Consensus 131 ~gGkhnDl~~VG~t~rH~TfFEMlGn~-Sfg-dY 162 (995)
+. + ..|.||.+=|-||--. +|+ ||
T Consensus 303 aE-------~-s~t~RHl~EFt~Le~Em~~~~~y 328 (530)
T PLN02850 303 AE-------D-SFTHRHLCEFTGLDLEMEIKEHY 328 (530)
T ss_pred cC-------C-CCCCccchhhccchhhhhhhcCH
Confidence 73 3 2578999999999655 777 35
No 67
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=27.28 E-value=76 Score=26.49 Aligned_cols=29 Identities=14% Similarity=0.397 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHhhcc
Q 001932 440 KGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (995)
Q Consensus 440 ~g~~~~~~~~~~~~~~~l~g~~~f~Lydt 468 (995)
.++..|+++++++.++.+|-++++++|..
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyee 31 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEE 31 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45677888888888889999999999854
No 68
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.96 E-value=78 Score=28.76 Aligned_cols=32 Identities=9% Similarity=0.287 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHhhcc
Q 001932 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (995)
Q Consensus 437 tl~~g~~~~~~~~~~~~~~~l~g~~~f~Lydt 468 (995)
+.+.+++.|+++++++.++.+|-++++++|..
T Consensus 7 sfEeal~~Le~IV~~LE~gdl~Leesl~lyee 38 (76)
T PRK14068 7 SFEEMMQELEQIVQKLDNETVSLEESLDLYQR 38 (76)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45667888889999998999999999999864
No 69
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=25.61 E-value=2.8e+02 Score=24.58 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=30.3
Q ss_pred ccCCCCcchHHHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhH
Q 001932 366 CPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELK 417 (995)
Q Consensus 366 ~Psn~grgYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~ 417 (995)
.|...|. ||+ ..|+... +.||++..-...++..+.+.++.-|+-+.
T Consensus 2 a~pk~~~----~R~-daA~dam-~~lG~~~~~v~~vl~~LL~lY~~nW~lIE 47 (65)
T PF10440_consen 2 APPKKGN----ERI-DAALDAM-RQLGFSKKQVRPVLKNLLKLYDGNWELIE 47 (65)
T ss_pred CCCCcCc----HHH-HHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCchhhh
Confidence 3555554 554 7888988 57999987666666666666666566554
No 70
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=25.51 E-value=36 Score=38.96 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=24.0
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 001932 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (995)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtDlf 315 (995)
+|==.|||+|||++++-|..+.=|+-+|
T Consensus 290 p~~G~giGidRL~m~~~g~~~Irdv~~F 317 (322)
T cd00776 290 PHGGFGLGLERLVMWLLGLDNIREAILF 317 (322)
T ss_pred CCceeeEhHHHHHHHHcCCCchheEeec
Confidence 5778899999999999999998777554
No 71
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=25.37 E-value=34 Score=41.06 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=58.0
Q ss_pred cccccccCCCCcCCCCChHHHHHHHHHhhhhCCCeeecCCCcccC-CCCCccccccccccccccccCCCCCCCccccccc
Q 001932 43 SAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPV-NDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTR 121 (995)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~-~d~tllftnAGm~~fk~~f~G~~~p~~~~~~~~r 121 (995)
|-..--||-+-.-.+.+++|--++|+++- |-......+|.|. +|++ .++| + +.+
T Consensus 226 s~~~~epGDvl~l~P~N~de~V~~Fie~~---gl~~~~~~~l~~~s~~~~---------~~~~---~----------~~~ 280 (574)
T KOG1159|consen 226 SYEEFEPGDVLSLLPSNSDETVQRFIEYL---GLDEDQLKPLKISSNDRS---------SPLP---L----------LPN 280 (574)
T ss_pred ccccccCCCEEEEecCCchHHHHHHHHHc---CCChhhccccccccCccc---------cccc---c----------cCC
Confidence 34445688888888889999999999886 5555556666552 3322 3444 1 122
Q ss_pred ccccccccccCCCCCCCCCCCCCCCccccccccccccccc
Q 001932 122 ACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD 161 (995)
Q Consensus 122 ~~~~QkCiR~gGkhnDl~~VG~t~rH~TfFEMlGn~Sfgd 161 (995)
-++.--|+-- |-|+..|= |-+|||||+.||-..
T Consensus 281 p~sl~~~lk~---~~D~~SvP----rrsFFe~l~~~s~~~ 313 (574)
T KOG1159|consen 281 PLSLLNLLKY---VLDFNSVP----RRSFFEMLAHFSTDE 313 (574)
T ss_pred chhHHHHHHH---hcccccCc----chHHHHHHHHHccCh
Confidence 2444556654 57888754 679999999999873
No 72
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=25.35 E-value=1.2e+02 Score=33.27 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=66.4
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCC--CCCc-cccccccccccc-----cccCCC-CC-------CCcc--ccccc
Q 001932 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVN--DPTL-LFANAGMNQYKP-----IFLGTA-DP-------NTQL--SKLTR 121 (995)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~~--d~tl-lftnAGm~~fk~-----~f~G~~-~p-------~~~~--~~~~r 121 (995)
-+.|++.+.+.|+++|...|....+.|.+ -.+. -....-|..|.+ +.|-.. .| .++. ....|
T Consensus 5 ~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~p~k 84 (261)
T cd00773 5 RRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLPLPLK 84 (261)
T ss_pred HHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCCCCeE
Confidence 46799999999999999999777776631 0000 001111333321 111000 00 0000 01247
Q ss_pred ccccccccccCCCCCCCCCCCCC-CCcccccccccccccccccHHHHHHHHHHHchhccCCCC
Q 001932 122 ACNTQKCIRAGGKHNDLDDVGKD-TYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPA 183 (995)
Q Consensus 122 ~~~~QkCiR~gGkhnDl~~VG~t-~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~ 183 (995)
...+++|.|.. . ..=|+. ..+..-||++|.-|.- --.|.|..+++.|. .+|++.
T Consensus 85 ~~y~g~vfR~e----~-~~~g~~re~~Q~g~Eiig~~~~~--~daE~i~l~~~~l~-~lg~~~ 139 (261)
T cd00773 85 LYYIGPVFRYE----R-PQKGRYREFYQVGVEIIGSDSPL--ADAEVIALAVEILE-ALGLKD 139 (261)
T ss_pred EEEEcCEEecC----C-CCCCCccceEEeceeeeCCCChH--HHHHHHHHHHHHHH-HcCCCc
Confidence 88999999962 1 112332 4457778999986552 13689999999985 478654
No 73
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.95 E-value=80 Score=29.94 Aligned_cols=32 Identities=6% Similarity=0.276 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHhhcc
Q 001932 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (995)
Q Consensus 437 tl~~g~~~~~~~~~~~~~~~l~g~~~f~Lydt 468 (995)
+.+.+++.|+++++++.++.+|-++++++|..
T Consensus 9 sFEeal~~LEeIV~~LEsgdl~LEesl~lyee 40 (95)
T PRK14069 9 SFEDALRELEQIAEKLERQDFSLEESLKAYER 40 (95)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45567888899999998999999999999864
No 74
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=23.26 E-value=65 Score=27.06 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
|++-++-.-+.+.+.||.|++++||.+.+
T Consensus 16 K~~l~~~it~~~~~~lg~~~~~i~V~i~E 44 (60)
T PF01361_consen 16 KRELAEAITDAVVEVLGIPPERISVVIEE 44 (60)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCCCeEEEEEEE
Confidence 56666667778888999999999998865
No 75
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=23.18 E-value=44 Score=38.25 Aligned_cols=96 Identities=18% Similarity=0.324 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCCC--ccccccc--cccc-cccccCCCCCCC---cc-ccccccccccccccc
Q 001932 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPT--LLFANAG--MNQY-KPIFLGTADPNT---QL-SKLTRACNTQKCIRA 131 (995)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~t--llftnAG--m~~f-k~~f~G~~~p~~---~~-~~~~r~~~~QkCiR~ 131 (995)
+.|-+.+-+||.++|...|..--+++...+. =.|..-. ..-| +|.||-+++--+ -+ +.+.|+-...+|.|.
T Consensus 26 s~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g~~~vf~i~~~FR~ 105 (335)
T PF00152_consen 26 SAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAGLERVFEIGPCFRN 105 (335)
T ss_dssp HHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTTHSEEEEEEEEE-B
T ss_pred HHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCcChHHHHhhhccccchhhhheecceec
Confidence 4577788899999999998665566533222 2333220 0011 344554432100 00 125666667999997
Q ss_pred CCCCCCCCCCCCCCCccccccccc-ccccccccH
Q 001932 132 GGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFK 164 (995)
Q Consensus 132 gGkhnDl~~VG~t~rH~TfFEMlG-n~SfgdYfK 164 (995)
. +. .|.||..=|-||- -.+|.||..
T Consensus 106 E-------~~-~~~rHl~EFtmLE~e~a~~~~~~ 131 (335)
T PF00152_consen 106 E-------ES-RTRRHLPEFTMLEWEMAFADYDD 131 (335)
T ss_dssp S-------SS-CBTTBSSEEEEEEEEEETSSHHH
T ss_pred c-------Cc-ccccchhhhhhhhhccccCcHHH
Confidence 3 22 5899998788873 446777644
No 76
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=22.63 E-value=5e+02 Score=29.90 Aligned_cols=198 Identities=15% Similarity=0.140 Sum_probs=110.6
Q ss_pred cCCCCccccCchHHHHHHHHhCCCCCccc------cccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhh---hhhhh
Q 001932 284 PLPAKHVDTGLGFERLTSILQNKMSNYDT------DVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRV---VADHI 354 (995)
Q Consensus 284 ~Lp~~~IDTGmGlERl~~vlqg~~snydt------Dlf~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rv---iaDH~ 354 (995)
..+-..+-++-+++|+..+.......+.. .-|.-....+.+..... .+. . . -..||- .-..+
T Consensus 33 ~~d~~~~~~~~~~~~l~~l~~a~~~il~~~~~~~r~~F~~~~~~l~~~~~l~-----~p~-~-~--a~~~~~d~~~f~~i 103 (335)
T PF11867_consen 33 GFDYSKFFEASPFERLELLDDAVDHILSLEDEERRKRFLKLVKELSKAYALC-----LPD-P-E--AEEYRDDIAFFQAI 103 (335)
T ss_pred CCChHHhcCCChHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH-----CCC-H-H--HHHHHHHHHHHHHH
Confidence 34444567788899999888777666642 23444444444432210 011 0 0 112221 33456
Q ss_pred hhheeeecCCCc-cCCCCcchHHHHHHHHHHHHhH-----hhhCCCcchhhhHHHHHHHHhcc-cChhhHhcHHHHHHHH
Q 001932 355 RTLSFAIADGSC-PGNEGREYVLRRILRRAVRYGS-----EVLKAQDGFFNGLVNIVVKVMGD-VFPELKQREAHIREII 427 (995)
Q Consensus 355 R~~~f~i~DG~~-Psn~grgYvlRrilRRa~~~~~-----~~l~~~~~~l~~lv~~v~~~~~~-~ypel~~~~~~i~~ii 427 (995)
|+...-+..+-- |+....+.=+|.||-.++..-. ...|.+.|=++-|-+...+.+.. -+|.+.. +.|+..|
T Consensus 104 r~~i~k~~~~~~~~~~~~~~~~i~~Lid~~I~s~~v~~i~~~~~~~~~disild~eFl~~v~~~~~k~~~~--e~L~~~l 181 (335)
T PF11867_consen 104 RAAIRKLYSDDDGPDIKEVEEKIRQLIDESIASEGVVDIFEAAGLKKPDISILDDEFLEEVKKMKSKNLKA--ELLEKLL 181 (335)
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCCChhhcCHHHHHHHHhccCchHHH--HHHHHHH
Confidence 666555544444 8888889999999999998531 11244444344444455444443 2676654 6777877
Q ss_pred HHHHHHHHHH-H---HHHHHHHHHHHHhhcCCCCChHHHHHhhccCCCChHHHHHHHHH------cCceeChhhHHHHHH
Q 001932 428 AAEEASFGKT-L---LKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEE------RGLLVDIEGFNNAMD 497 (995)
Q Consensus 428 ~~Ee~~F~~t-l---~~g~~~~~~~~~~~~~~~l~g~~~f~Lydt~G~p~dl~~~~a~e------~g~~vd~~~f~~~~~ 497 (995)
+.+-....+. . .+=.++|+++|++.+++.++-+++|.-. +++.++|.++ .|++-++-.|+.++.
T Consensus 182 ~~~I~~~~~~N~~~~~~fsErLe~iI~~Y~~~~i~~~e~~~eL------i~la~el~~~~~r~~~~gLseeE~AFyd~L~ 255 (335)
T PF11867_consen 182 RDEIKVRMKENPVRYKKFSERLEEIIEKYNNRSISSEEVIEEL------IKLAKELREEEERAEELGLSEEELAFYDALA 255 (335)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH------HHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 7776654332 1 1223467777777766778777776542 3445555544 355544445666664
Q ss_pred H
Q 001932 498 E 498 (995)
Q Consensus 498 ~ 498 (995)
+
T Consensus 256 ~ 256 (335)
T PF11867_consen 256 K 256 (335)
T ss_pred c
Confidence 3
No 77
>PLN02850 aspartate-tRNA ligase
Probab=21.56 E-value=45 Score=40.96 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=24.5
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 001932 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (995)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtDlf~ 316 (995)
+|==.|+|||||++++-|.++.=|+-+|.
T Consensus 494 PhgG~GiGlERLvM~l~g~~nIr~v~~FP 522 (530)
T PLN02850 494 PHGGFGVGLERVVMLFCGLNNIRKTSLFP 522 (530)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEeecC
Confidence 45678999999999999999988876664
No 78
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=21.42 E-value=47 Score=39.95 Aligned_cols=29 Identities=34% Similarity=0.433 Sum_probs=23.4
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 001932 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (995)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtDlf~ 316 (995)
++==-|||+|||++.+-|.++.=|+-+|.
T Consensus 417 PhgG~GiGieRlvm~l~g~~~Irdv~~FP 445 (453)
T TIGR00457 417 PHSGFGLGFERLLAYITGLENIRDAIPFP 445 (453)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhhccCc
Confidence 56667999999999999988877765553
No 79
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=21.26 E-value=1.9e+02 Score=33.95 Aligned_cols=116 Identities=14% Similarity=0.061 Sum_probs=69.2
Q ss_pred CCChHHHHHHHHHhhhhCCCeeecCCCcccCC---CCCccccccccccccccccCCC---CC-----------CCccccc
Q 001932 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVN---DPTLLFANAGMNQYKPIFLGTA---DP-----------NTQLSKL 119 (995)
Q Consensus 57 ~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~---d~tllftnAGm~~fk~~f~G~~---~p-----------~~~~~~~ 119 (995)
-+..++|++++.+-|+++|...|....+-|.+ +.+--.+..-|..|.+- .|.. .| .+.....
T Consensus 4 ~~~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpD~T~piaR~~~~~~~~~p 82 (373)
T PRK12295 4 LSASAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDE-NGEELCLRPDFTIPVCRRHIATAGGEP 82 (373)
T ss_pred chhHHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECC-CCCEEeeCCCCcHHHHHHHHHcCCCCC
Confidence 34578999999999999999999655554421 00000122234444321 1110 00 0001112
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCC
Q 001932 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLP 182 (995)
Q Consensus 120 ~r~~~~QkCiR~gGkhnDl~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~ 182 (995)
.|.+-+++|.|. + .-...-.|.+-||.+|.-+-= +--.|.|..+++.|.+ +|++
T Consensus 83 ~R~~Y~g~VfR~-----~--~gr~rEf~Q~GvEiiG~~~~~-~aDaEvi~l~~~~L~~-lgl~ 136 (373)
T PRK12295 83 ARYAYLGEVFRQ-----R--RDRASEFLQAGIESFGRADPA-AADAEVLALALEALAA-LGPG 136 (373)
T ss_pred eEEEEEccEEEC-----C--CCCCCcceEeeEEeeCCCCCc-cchHHHHHHHHHHHHH-cCCC
Confidence 478888999996 3 222345668899999965411 2357999999999864 7886
No 80
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=20.97 E-value=1e+02 Score=26.28 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
.|++-++-.-+.|.+.||+|++.++|.+-+
T Consensus 16 qk~~l~~~it~~l~~~lg~p~~~v~V~i~e 45 (64)
T PRK01964 16 KIKNLIREVTEAISATLDVPKERVRVIVNE 45 (64)
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 467777777888889999999999998854
No 81
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=20.47 E-value=50 Score=37.98 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=0.0
Q ss_pred CchHHHHHHHHhCCCCCcccccc
Q 001932 293 GLGFERLTSILQNKMSNYDTDVF 315 (995)
Q Consensus 293 GmGlERl~~vlqg~~snydtDlf 315 (995)
|+|||||++.+-|.++.=|+-.|
T Consensus 302 glGleRL~m~~~g~~~Irdv~~F 324 (329)
T cd00775 302 GIGIDRLVMLLTDSNSIRDVILF 324 (329)
T ss_pred EecHHHHHHHHcCCCcHHhcccC
No 82
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=20.46 E-value=1.3e+02 Score=24.78 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
|++-++-.-+.|.+.+|.|++.++|.+.+
T Consensus 16 k~~l~~~i~~~l~~~~g~~~~~v~V~i~e 44 (58)
T cd00491 16 KRELIERVTEAVSEILGAPEATIVVIIDE 44 (58)
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55666667778889999999999998864
No 83
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=20.36 E-value=2.5e+02 Score=31.86 Aligned_cols=117 Identities=14% Similarity=0.182 Sum_probs=72.4
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcc-----ccccccccccccccCCC---CCC-----------C--cccc
Q 001932 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLL-----FANAGMNQYKPIFLGTA---DPN-----------T--QLSK 118 (995)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tll-----ftnAGm~~fk~~f~G~~---~p~-----------~--~~~~ 118 (995)
-.+|++.+.+.|+++|...|.+..+-|. +++ ..+..|..|.+-= |.. .|. + ....
T Consensus 11 ~~~i~~~l~~~~~~~Gy~~i~tP~le~~---~~~~~~~~~~~~~~~~~~d~~-g~~l~LRpD~T~~iaR~~~~~~~~~~~ 86 (314)
T TIGR00443 11 KEEIERQLQDVFRSWGYQEIITPTLEYL---DTLSAGGGILNEDLFKLFDSL-GRVLGLRPDMTTPIARAVSTRLRDRPL 86 (314)
T ss_pred HHHHHHHHHHHHHHcCCeeccCcchhhH---HHhcccCCcchhceEEEECCC-CCEEeecCcCcHHHHHHHHHhcccCCC
Confidence 5689999999999999999966544442 111 1344456664421 221 010 0 0011
Q ss_pred cccccccccccccCCCCCCCCCCCCC-CCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEE
Q 001932 119 LTRACNTQKCIRAGGKHNDLDDVGKD-TYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATY 190 (995)
Q Consensus 119 ~~r~~~~QkCiR~gGkhnDl~~VG~t-~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~ 190 (995)
..|.+-+.+|.|.. =..-|+. ..+.+-||.+|.=|.- --.|.|.+|++.|.+ +|+. .+.+.+
T Consensus 87 p~r~~y~g~VfR~~-----~~~~gr~re~~Q~g~Eiig~~~~~--adaEvi~l~~~~l~~-lg~~--~~~i~l 149 (314)
T TIGR00443 87 PLRLCYAGNVFRTN-----ESGAGRSREFTQAGVELIGAGGPA--ADAEVIALLIEALKA-LGLK--DFKIEL 149 (314)
T ss_pred CeEEEEeceEeecC-----CCcCCCcccccccceEEeCCCCch--hHHHHHHHHHHHHHH-cCCC--CeEEEe
Confidence 24778889999962 2223332 4568889999977663 347999999999976 7875 444443
No 84
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=20.25 E-value=1.1e+02 Score=26.11 Aligned_cols=31 Identities=19% Similarity=0.048 Sum_probs=24.9
Q ss_pred ecceEEEEeeCCeeeccceeecccceEEEEe
Q 001932 572 LASSSFYAEQGGQIFDEGFIEGLFGSFYVRN 602 (995)
Q Consensus 572 LD~T~FYpegGGQ~~D~G~I~~~~~~~~V~d 602 (995)
|.+...++..+||+.|+.+.+.+++.++++.
T Consensus 30 l~~~~~~A~Vng~~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 30 LAKRAVAAKVNGQLVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp HHHCEEEEEETTEEEETTSBB-SSEEEEEEE
T ss_pred HHhheeEEEEcCEECCCCCCcCCCCEEEEEC
Confidence 4566778889999999999999988888763
No 85
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=20.17 E-value=51 Score=40.89 Aligned_cols=29 Identities=38% Similarity=0.465 Sum_probs=25.0
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 001932 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (995)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtDlf~ 316 (995)
+|==-|||||||++.+-|..+.=|+-+|.
T Consensus 550 PhgGfGLGiERLvm~ltGl~nIRDvi~FP 578 (586)
T PTZ00425 550 PHAGFGLGFERLIMLVTGVDNIKDTIPFP 578 (586)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEEECc
Confidence 67778999999999999999988885554
No 86
>PRK06462 asparagine synthetase A; Reviewed
Probab=20.15 E-value=53 Score=37.89 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=23.4
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 001932 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (995)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtDlf~ 316 (995)
+|==-|||+|||++.+-|..+.=|+-+|.
T Consensus 299 p~~G~glGidRLvm~~~g~~~Irdv~~FP 327 (335)
T PRK06462 299 PSAGFGIGVERLTRYICGLRHIREVQPFP 327 (335)
T ss_pred CCCeEEEcHHHHHHHHcCCCchheeeecc
Confidence 36667999999999999998887764443
Done!