Query 001932
Match_columns 995
No_of_seqs 352 out of 2254
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 05:12:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001932.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001932hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zze_A Alanyl-tRNA synthetase; 100.0 1E-191 4E-196 1705.7 45.8 629 53-792 52-752 (752)
2 2ztg_A Alanyl-tRNA synthetase; 100.0 2E-179 8E-184 1600.2 44.0 617 54-792 56-738 (739)
3 3hy0_A Alanyl-tRNA synthetase; 100.0 5E-174 2E-178 1450.8 30.0 424 58-506 2-438 (441)
4 1yfs_A Alanyl-tRNA synthetase; 100.0 9E-174 3E-178 1456.8 26.3 423 58-508 3-430 (465)
5 3kew_A DHHA1 domain protein; s 100.0 8E-49 2.7E-53 420.7 20.6 219 538-797 9-234 (241)
6 2e1b_A PH0108, 216AA long hypo 100.0 4.6E-44 1.6E-48 378.2 13.9 194 539-789 12-214 (216)
7 1nyr_A Threonyl-tRNA synthetas 100.0 1E-28 3.6E-33 299.6 11.0 233 574-853 35-283 (645)
8 1tke_A Threonyl-tRNA synthetas 99.9 7E-28 2.4E-32 256.1 12.9 175 575-791 34-223 (224)
9 1qf6_A THRRS, threonyl-tRNA sy 99.9 1.3E-27 4.5E-32 289.3 12.4 234 574-853 33-283 (642)
10 1v4p_A Alanyl-tRNA synthetase; 99.9 9.3E-26 3.2E-30 226.8 15.6 143 633-792 4-152 (157)
11 2zvf_A Alanyl-tRNA synthetase; 99.8 1.7E-19 6E-24 183.5 18.4 170 790-995 1-171 (171)
12 3g98_A Alanyl-tRNA synthetase; 99.6 2.7E-15 9.3E-20 142.3 11.1 105 882-991 6-110 (111)
13 3rf1_A Glycyl-tRNA synthetase 94.3 0.067 2.3E-06 56.9 6.9 180 53-312 20-201 (311)
14 1nnh_A Asparaginyl-tRNA synthe 91.9 0.65 2.2E-05 50.8 10.7 109 60-179 18-141 (294)
15 1j5w_A Glycyl-tRNA synthetase 82.6 0.44 1.5E-05 50.5 1.8 172 58-312 13-189 (298)
16 2zxr_A Single-stranded DNA spe 69.7 15 0.0005 44.6 10.3 84 895-993 338-421 (666)
17 4dh4_A MIF; trimer, isomerase; 68.8 2.6 8.8E-05 39.1 2.8 30 163-192 72-101 (114)
18 2dq3_A Seryl-tRNA synthetase; 64.2 11 0.00037 43.2 7.4 110 60-182 175-316 (425)
19 3fwu_A Macrophage migration in 64.0 3.9 0.00013 39.3 3.1 29 164-192 94-122 (133)
20 3pco_A Phenylalanyl-tRNA synth 63.6 20 0.0007 39.6 9.2 39 48-86 96-135 (327)
21 3djh_A Macrophage migration in 63.5 3.8 0.00013 38.0 2.8 30 163-192 71-100 (114)
22 3kan_A D-dopachrome tautomeras 62.5 4 0.00014 38.2 2.8 29 164-192 73-101 (117)
23 3b64_A Macrophage migration in 60.5 5.1 0.00017 36.8 3.1 30 163-192 72-101 (112)
24 2cja_A Seryl-tRNA synthetase; 60.5 29 0.001 40.8 10.2 52 121-182 346-407 (522)
25 3fwt_A Macrophage migration in 59.6 4.8 0.00016 38.6 2.8 30 163-192 93-122 (133)
26 3t5s_A Gilaa.00834.A, macropha 57.3 5.1 0.00017 38.6 2.6 29 164-192 94-122 (135)
27 2wkb_A Macrophage migration in 55.2 6.9 0.00024 36.8 3.1 30 163-192 72-101 (125)
28 1hfo_A Migration inhibitory fa 54.1 6.8 0.00023 35.9 2.8 29 164-192 72-100 (113)
29 2xcz_A Possible ATLS1-like lig 54.1 6.8 0.00023 36.1 2.8 29 164-192 73-101 (115)
30 2os5_A Acemif; macrophage migr 52.6 7.4 0.00025 36.2 2.8 29 164-192 73-101 (119)
31 1uiz_A MIF, macrophage migrati 52.6 7.5 0.00026 35.8 2.8 29 164-192 73-101 (115)
32 3twe_A Alpha4H; unknown functi 52.1 16 0.00054 24.6 3.4 22 840-861 3-24 (27)
33 3dsq_A Pyrrolysyl-tRNA synthet 51.8 90 0.0031 33.6 11.7 110 60-183 73-206 (288)
34 3n4h_A Putative tautomerase; C 43.7 12 0.00042 36.1 2.9 53 163-215 77-134 (148)
35 1otf_A 4-oxalocrotonate tautom 43.3 13 0.00046 29.7 2.6 30 163-192 15-44 (62)
36 2opa_A Probable tautomerase YW 43.2 13 0.00046 29.7 2.6 30 163-192 15-44 (61)
37 3abf_A 4-oxalocrotonate tautom 41.0 18 0.0006 29.3 3.0 29 164-192 17-45 (64)
38 3m20_A 4-oxalocrotonate tautom 39.7 26 0.00089 28.5 3.9 29 164-192 15-43 (62)
39 1eov_A ASPRS, aspartyl-tRNA sy 38.3 29 0.001 40.4 5.4 99 62-176 183-293 (487)
40 1gyx_A YDCE, B1461, hypothetic 38.1 38 0.0013 28.7 4.9 42 163-211 16-57 (76)
41 3m21_A Probable tautomerase HP 34.6 25 0.00087 29.0 3.1 29 164-192 19-47 (67)
42 3a5y_A GENX, putative lysyl-tR 33.9 34 0.0012 38.0 4.9 103 62-180 41-160 (345)
43 1wwt_A Threonyl-tRNA synthetas 33.4 4.8 0.00016 35.4 -1.8 35 574-608 44-78 (88)
44 2i7u_A Four-alpha-helix bundle 33.2 7.9 0.00027 30.7 -0.3 15 948-962 17-31 (62)
45 1eh2_A EPS15; calcium binding, 32.9 1.1E+02 0.0038 27.6 7.4 48 453-500 27-78 (106)
46 1mww_A Hypothetical protein HI 31.9 24 0.00083 33.0 2.8 29 164-192 75-103 (128)
47 1c07_A Protein (epidermal grow 29.9 97 0.0033 27.0 6.3 47 454-500 24-74 (95)
48 2aal_A Malonate semialdehyde d 28.9 29 0.001 32.6 2.8 29 164-192 81-109 (131)
49 1qjt_A EH1, epidermal growth f 28.4 86 0.0029 27.8 5.7 46 454-499 25-74 (99)
50 3mb2_A 4-oxalocrotonate tautom 28.1 34 0.0012 28.6 2.8 29 164-192 17-45 (72)
51 3fia_A Intersectin-1; EH 1 dom 27.9 90 0.0031 29.4 5.9 47 454-500 46-96 (121)
52 2x4k_A 4-oxalocrotonate tautom 27.3 35 0.0012 27.0 2.6 29 164-192 19-47 (63)
53 3a5y_A GENX, putative lysyl-tR 24.6 26 0.00091 38.9 1.9 28 288-315 313-340 (345)
54 1iq3_A Ralbp1-interacting prot 23.7 99 0.0034 28.0 5.3 46 454-499 36-85 (110)
55 1wyd_A Hypothetical aspartyl-t 22.3 32 0.0011 39.5 1.9 101 61-176 138-247 (429)
56 3ry0_A Putative tautomerase; o 22.3 49 0.0017 27.0 2.6 30 163-192 15-44 (65)
57 1vp7_A Exodeoxyribonuclease VI 22.1 59 0.002 29.8 3.3 31 438-468 32-62 (100)
58 3nem_A Aspartyl-tRNA synthetas 21.9 32 0.0011 39.5 1.8 102 62-175 142-258 (438)
59 3bju_A Lysyl-tRNA synthetase; 21.4 33 0.0011 40.3 1.9 100 62-176 181-298 (521)
60 1n9w_A Aspartyl-tRNA synthetas 21.3 34 0.0011 39.1 1.9 102 61-177 129-240 (422)
61 1fi6_A EH domain protein REPS1 21.0 1.2E+02 0.0041 26.1 5.1 46 454-499 23-72 (92)
62 4gyx_A Type III collagen fragm 20.9 34 0.0012 23.7 1.1 10 231-240 19-28 (31)
63 3m4p_A Ehasnrs, asparaginyl-tR 20.8 34 0.0012 39.5 1.8 101 62-174 161-274 (456)
64 4dzn_A Coiled-coil peptide CC- 20.8 1.8E+02 0.0062 20.5 4.7 24 847-870 4-27 (33)
65 1e1o_A Lysyl-tRNA synthetase, 20.4 36 0.0012 39.9 1.9 103 62-176 188-298 (504)
66 3i7f_A Aspartyl-tRNA synthetas 20.4 35 0.0012 40.3 1.8 100 62-175 249-365 (548)
67 3a74_A Lysyl-tRNA synthetase; 20.3 36 0.0012 39.7 1.9 105 61-177 178-290 (493)
68 4ex5_A Lysine--tRNA ligase; st 20.2 36 0.0012 40.1 1.9 100 62-176 209-326 (529)
69 1x54_A Asparaginyl-tRNA synthe 20.0 37 0.0013 38.9 1.9 102 62-177 140-249 (434)
No 1
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=1.3e-191 Score=1705.73 Aligned_cols=629 Identities=27% Similarity=0.443 Sum_probs=570.9
Q ss_pred CcCCCCChHHHHHHHHHhhhhCC---CeeecCCCcccCCCCCcccccccccccccccc-CCCCCCCcccccccccccccc
Q 001932 53 PQVVEWPATKVRDTFFKFFEDKN---HVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKC 128 (995)
Q Consensus 53 ~~~~~~~~~eiR~~Fl~fF~~~g---H~~v~s~slvp~~d~tllftnAGm~~fk~~f~-G~~~p~~~~~~~~r~~~~QkC 128 (995)
+..++||++|||++||+||++|| |++||||||||+|||||||||||||||||||+ |.++|+ ++|+||||||
T Consensus 52 ~~~~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp-----~~r~~~~QkC 126 (752)
T 2zze_A 52 GIPRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPP-----ANPLVISQPS 126 (752)
T ss_dssp SSSSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCS-----SSSEEEEEEE
T ss_pred cccccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCCCCCeeeeecchhhhhHhhcCCCcCCC-----CCCccccccc
Confidence 34578999999999999999999 99999999999999999999999999999997 999986 4899999999
Q ss_pred cccCCCCCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcH
Q 001932 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDN 203 (995)
Q Consensus 129 iR~gGkhnDl~~VG~t~rH~TfFEMlGn~Sfg-----dYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~ 203 (995)
||+ |||||||+|+||||||||||||||| ||||+|||+|||||||++||||++||+ +
T Consensus 127 iR~----~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl~~~ri~--~------------- 187 (752)
T 2zze_A 127 IRF----TDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPEDIT--F------------- 187 (752)
T ss_dssp ECC----TTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGGGEE--E-------------
T ss_pred eec----CcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhhhhhcchhhee--e-------------
Confidence 996 7999999999999999999999999 999999999999999999999999993 2
Q ss_pred HHHHHHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeecccc---------
Q 001932 204 EARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQF--------- 274 (995)
Q Consensus 204 E~~~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~--------- 274 (995)
+||||+|| |||||||||||| | |||||||||||
T Consensus 188 --------------------~dNfW~~G--GpcGPcsEI~~d---g--------------lEiwNlVFmq~~~~~~~~~~ 228 (752)
T 2zze_A 188 --------------------KENPWAGG--GNAGPAFEVLYR---G--------------LEVATLVFMQYXXAPENAPQ 228 (752)
T ss_dssp --------------------EECCEEET--TEEECEEEEEET---T--------------EEEEEEEEEEEEECCTTCCS
T ss_pred --------------------ccCcccCC--CCCCCceeEEEC---C--------------Eeeeeeeeeeeccccccccc
Confidence 69999999 999999999997 1 99999999999
Q ss_pred ----ccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCc
Q 001932 275 ----NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADD 339 (995)
Q Consensus 275 ----~~~~~g~l~~Lp~~~IDTGmGlERl~~vlqg~~snydtDlf~pli~~i~~~~~~~-----------~y~g~~~~~~ 339 (995)
|| ++|+|.|||+||||||||||||+|||||++||||| +|.|||++|++++|++ +|+|.++.++
T Consensus 229 ~~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~y~~~~~~~~~a~~~g~~~~~~ 306 (752)
T 2zze_A 229 DQVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIED 306 (752)
T ss_dssp CCEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCCCCCHHHHHHHHHHHHTCCSSS
T ss_pred cchhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCCccchhhhhhhhhccccCCccc
Confidence 88 69999999999999999999999999999999999 9999999999999985 2345444222
Q ss_pred cccc------------------------cchhhhhhhhhhhheeeecCCCccCCCCcchHHHHHHHHHHHHhHhhhCCCc
Q 001932 340 ADKV------------------------DMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQD 395 (995)
Q Consensus 340 ~~~~------------------------~~~~rviaDH~R~~~f~i~DG~~Psn~grgYvlRrilRRa~~~~~~~l~~~~ 395 (995)
.+.+ +.++||||||+||++|||+||++|||+|||||||||||||+|+|+ +||++.
T Consensus 307 ~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRrilRRa~r~~~-~lg~~~ 385 (752)
T 2zze_A 307 LGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLR-ELGLEV 385 (752)
T ss_dssp SSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHHH-HTTCCC
T ss_pred hhhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhHHHHHHHHHHHHHHH-HhCCCc
Confidence 1111 468899999999999999999999999999999999999999995 799999
Q ss_pred chhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCChHHHHHhhccCCCC
Q 001932 396 GFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTYGFP 472 (995)
Q Consensus 396 ~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~---~~~l~g~~~f~Lydt~G~p 472 (995)
| |++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++.+++++ +++|||++||+||||||||
T Consensus 386 ~-l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP 464 (752)
T 2zze_A 386 P-LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLT 464 (752)
T ss_dssp C-HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHCCC
T ss_pred c-hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHhccCCC
Confidence 9 99999999999999999999999999999999999999999999999999998874 3579999999999999999
Q ss_pred hHHHHHHHHHcCceeChh-hHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccccc--cceeeeEEE
Q 001932 473 LDLTQLMAEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVI 549 (995)
Q Consensus 473 ~dl~~~~a~e~g~~vd~~-~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~y~--y~~~~~a~V 549 (995)
+|||++||+|+|++||++ +|+++|++||+++|++.. ... .+ ...+. ..|+|+ +.+|+ |..+++|+|
T Consensus 465 ~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~--~~~---~~---~~~~~--~~~~T~-~l~Y~~~yl~~~~a~V 533 (752)
T 2zze_A 465 PEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKG--EEL---VD---FELLK--DLPDTR-RLYYEDPFMXEFDAXV 533 (752)
T ss_dssp HHHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC---------C---CC---SSSSS--SSCCCE-EHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhccc--ccc---hh---hHHhc--cCCCce-eecccCCccceEEEEE
Confidence 999999999999999999 899999999998875421 100 00 00111 346775 77787 458999999
Q ss_pred EEEEeCCeeeeeecCCCeEEEEecceEEEEeeCCeeeccceeecccceEEEEeEEEeCCEEEEEEeeccCCCcCCCCCeE
Q 001932 550 KAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEV 629 (995)
Q Consensus 550 l~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~ivH~~~~~~~~~~l~~G~~V 629 (995)
+++.. .+|+||+|+|||||||||+|+|+|..++..++|+||++.+|.++|.+.. . +.+++|++|
T Consensus 534 l~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~-~--~~l~vGd~V 597 (752)
T 2zze_A 534 LRVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVED-P--GAFXEGMIV 597 (752)
T ss_dssp EEEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTEEEEEEEEEEETTEEEEEESC-G--GGCCTTCEE
T ss_pred EEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCEEEEEEeeeecCcEEEEeccc-c--CccCcCCeE
Confidence 99974 3699999999999999999999998766789999999999999999874 3 678999999
Q ss_pred ehh-------hHhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEE
Q 001932 630 ICK-------LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFS 702 (995)
Q Consensus 630 ~~~-------~~m~~HTAtHLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~~NeiI~~nlpV~~ 702 (995)
.+. .+|++|||+|||++||+++||.+++|.|+++.++++||||+++.++|++++++||++||++|++|+||++
T Consensus 598 ~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlpV~~ 677 (752)
T 2zze_A 598 HGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTW 677 (752)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEE
T ss_pred EEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCccce
Confidence 999 8999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred EEcCHHHHhcccCchhhc--CccCCCCEEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeecc
Q 001932 703 KEATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIA 780 (995)
Q Consensus 703 ~~~~~eEA~~~~g~~~~f--~e~y~d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~ 780 (995)
.+++++||+++.++ ++| +++|++.||||+|+ ++|.++||||||+|||+||.|+|+++++++
T Consensus 678 ~~~s~eEA~~~~~~-~lf~~ge~ygd~VRVV~IG----------------d~svelCGGTHV~nTgeIG~fKIls~s~i~ 740 (752)
T 2zze_A 678 EWLPRTTAEQXYGF-RLYQGGVVPGREIRVVXIE----------------DWDVQACGGTHLPSTGLVGPIXILRTERIQ 740 (752)
T ss_dssp EEEEHHHHHHHHCG-GGCSSCCCCSSEEEEEEET----------------TTEEEECCSCCCSBGGGGCCEEEEEEEEEE
T ss_pred eecCHHHHhhcchh-hhhcCCCCCCCeEEEEEEC----------------CceeCCCCCCccCCHhHccEEEEEEEEEEc
Confidence 99999999997544 455 66788999999999 689999999999999999999999999999
Q ss_pred CCeeEEEEEech
Q 001932 781 KGIRRITAVTTG 792 (995)
Q Consensus 781 ~G~~RI~~vtG~ 792 (995)
+|++||+|+||.
T Consensus 741 ~GvrRIeavtG~ 752 (752)
T 2zze_A 741 DGVERIIFACGE 752 (752)
T ss_dssp TTEEEEEEEECC
T ss_pred CCEEEEEEEeCC
Confidence 999999999994
No 2
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.2e-179 Score=1600.24 Aligned_cols=617 Identities=27% Similarity=0.460 Sum_probs=562.0
Q ss_pred cCCCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccc-CCCCCCCcccccccccccccccccC
Q 001932 54 QVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAG 132 (995)
Q Consensus 54 ~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~f~-G~~~p~~~~~~~~r~~~~QkCiR~g 132 (995)
..++|+++|||++|++||++|||+++|||||||+||||||||||||+||||||+ |..+|+ ++|+|++|||||+
T Consensus 56 ~~~~~~~~eir~~f~~ff~~~gh~~~~s~~lvp~~dptllft~agm~~fkp~~~~g~~~p~-----~~~~~~~Q~ciR~- 129 (739)
T 2ztg_A 56 FKKPFELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPP-----ANPLTISQPCIRL- 129 (739)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTTTTTSSSCCS-----SSSEEEEEEEECG-
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCEEeCCcCcCCCCCCCceeeecChhhCcHhHhCCCCCCC-----CCCcccccccccC-
Confidence 446799999999999999999999999999999999999999999999999997 999886 4799999999997
Q ss_pred CCCCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHH
Q 001932 133 GKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARD 207 (995)
Q Consensus 133 GkhnDl~~VG~t~rH~TfFEMlGn~Sfg-----dYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~ 207 (995)
|||||||+|+||||||||||||||| ||||+|||+|||||| ++|||||+||. +
T Consensus 130 ---~D~envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~l-~~~g~~~~~i~--~----------------- 186 (739)
T 2ztg_A 130 ---DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELL-NELGVKKEDIV--Y----------------- 186 (739)
T ss_dssp ---GGGGGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHH-HHHTCCGGGCE--E-----------------
T ss_pred ---cccccCCCCCcchhhhhccCccccCCCccccchHHHHHHHHHHHH-HHhCCCHHHee--e-----------------
Confidence 7999999999999999999999999 999999999999999 88999999872 2
Q ss_pred HHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccccCCCCccc----
Q 001932 208 IWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLK---- 283 (995)
Q Consensus 208 iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~---- 283 (995)
+||||+|| |||||||||||| | |||||+|||||||+++|++.
T Consensus 187 ----------------~dnfW~~g--Gp~Gpc~Ei~~d---g--------------~EiwnlVfmq~~r~~~g~~~~~~~ 231 (739)
T 2ztg_A 187 ----------------KEEPWAGG--GNAGPCLEAIVG---G--------------LEVATLVFMNLEEHPEGDIEIKGA 231 (739)
T ss_dssp ----------------EEEEEEET--TEEEEEEEEEET---T--------------EEEEEEEEEEEEECTTCCEEETTE
T ss_pred ----------------ccCcccCC--CCCCCeeEEEEC---C--------------EEeeeeeeEEeeecCCCceeecCc
Confidence 69999999 999999999997 2 99999999999999999998
Q ss_pred ---cCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCC-----------------CCCCCCCccccc
Q 001932 284 ---PLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPY-----------------SGKVGADDADKV 343 (995)
Q Consensus 284 ---~Lp~~~IDTGmGlERl~~vlqg~~snydtDlf~pli~~i~~~~~~~~y-----------------~g~~~~~~~~~~ 343 (995)
|||+|+||||||||||+|+|||++||||| +|.|||++|++++|++ | +|+++.++.+.+
T Consensus 232 ~y~~l~~~~iDtG~GlER~~~~lqg~~s~yd~-~f~pii~~~~~~~g~~-y~~~~~~~~~~~~~~~~~~G~~~~~~~~~i 309 (739)
T 2ztg_A 232 RYRKMDNYIVDTGYGLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVS-FNREDERVRRIVAESSKLAGIMGELRGERL 309 (739)
T ss_dssp EEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HCHHHHHHHHHTSCCS-SCTTCHHHHHHHHHHHHHHHHHTTCCTHHH
T ss_pred cccCCCCCeEecCcCHHHHHHHHcCCCchHHh-hHHHHHHHHHHHhCCC-ccccccchhhhhhhhhhcccccCcccchhH
Confidence 99999999999999999999999999999 9999999999999985 4 333333321211
Q ss_pred c------------------------chhhhhhhhhhhheeeecCCCccCCCCcchHHHHHHHHHHHHhHhhhCCCcchhh
Q 001932 344 D------------------------MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFN 399 (995)
Q Consensus 344 ~------------------------~~~rviaDH~R~~~f~i~DG~~Psn~grgYvlRrilRRa~~~~~~~l~~~~~~l~ 399 (995)
+ .++||||||+||++|||+||++|||+|||||||||||||+|+| ++||++.| |+
T Consensus 310 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~ 387 (739)
T 2ztg_A 310 NQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLA-EELELGLD-LY 387 (739)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHH-HHTTCSSC-HH
T ss_pred HHHHHHhhhhcccchhhhhhhccccceEEEEecHHHHHHHHhccCcccCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HH
Confidence 1 4788999999999999999999999999999999999999999 57999999 99
Q ss_pred hHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHhhccCCCChHHHHHH
Q 001932 400 GLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLM 479 (995)
Q Consensus 400 ~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~~l~g~~~f~Lydt~G~p~dl~~~~ 479 (995)
+||++|++.|++ ||.++++.|++||+.||++|.+||++|+++|++.++++++ |||++||+||||||||+|||++|
T Consensus 388 ~lv~~~~~~m~~---el~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~--l~g~~af~LyDTyGfP~dlt~~i 462 (739)
T 2ztg_A 388 DLVEMHKKILGF---EFDVPLSTVQEILELEKERYRTTVSKGTRLVERLVERKKK--LEKDDLIELYDSHGIPVELAVGI 462 (739)
T ss_dssp HHHHHHHHHHCC---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSB--CCHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHhcCCCHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999988743 99999999999999999999999
Q ss_pred HHHcCceeChh-hHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccccc--cceeeeEEEEEEEeCC
Q 001932 480 AEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGS 556 (995)
Q Consensus 480 a~e~g~~vd~~-~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~y~--y~~~~~a~Vl~i~~~~ 556 (995)
|+|+|++||++ +|+++|++||++||++. . . + . .+. ...|+|+ +.+|+ |..+++|+|+++..
T Consensus 463 a~e~g~~vd~~~~F~~~m~~q~~~a~~~~--~-~-----~---~-~~~-~~~~~T~-~l~Y~~~y~~~~~a~Vl~i~~-- 526 (739)
T 2ztg_A 463 AAEKGAEVEMPKDIYAELAKRHSKAEKVQ--E-K-----K---I-TLQ-NEYPATE-KLYYDDPTLLEFEAEVIGVEG-- 526 (739)
T ss_dssp HHHTTCBCCCCTTHHHHHHHTTSBCCCCC--C-C-----C---C-CCS-SCCCCCE-ECTTTCTTCCEEEEEEEEEET--
T ss_pred HHHcCCeeCCcccHHHHHHHHHHHHhhcc--c-c-----c---h-hhh-ccCCCce-eecccCCcccEEEEEEEEEEc--
Confidence 99999999999 89999999998887531 1 0 1 0 111 1246675 77887 45899999999974
Q ss_pred eeeeeecCCCeEEEEecceEEEEeeCCeeeccceeecccceEEEEeEEEeCCEEEEEEeeccCCCcC-CCCCeEehh---
Q 001932 557 EFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRF-SVGEEVICK--- 632 (995)
Q Consensus 557 ~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~ivH~~~~~~~~~~l-~~G~~V~~~--- 632 (995)
.+|+||+|+|||||||||+|+|+|..++..++|++|++.+|.++|.+. +.+ ++|++|.+.
T Consensus 527 -----------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~-----~~~~~~Gd~V~~~VD~ 590 (739)
T 2ztg_A 527 -----------DFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVK-----GAKPEVGTKVKGVIDS 590 (739)
T ss_dssp -----------TEEEESEECCCCSBTTBCCCCEEEEETTEEEEECEEEEETTEEEEECC-----SSCCCTTCEEEEEECH
T ss_pred -----------CEEEEeCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEc-----ccCCCCCCEEEEEEcH
Confidence 369999999999999999999999876678999999999999999986 445 699999998
Q ss_pred ----hHhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHH
Q 001932 633 ----LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLA 708 (995)
Q Consensus 633 ----~~m~~HTAtHLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~~NeiI~~nlpV~~~~~~~e 708 (995)
.+|++|||+|||++|++++||.+++|.||++.++++||||+++.++|++++++||++||++|++|+||++.+++++
T Consensus 591 ~rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~~~~lT~edL~~IE~~vNeiI~~nlpV~~~~~s~e 670 (739)
T 2ztg_A 591 DVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRI 670 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSSCCCHHHHHHHHHHHHHHHHTTCBEEEEEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHH
Confidence 8999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HHhcccCchhhc-CccCCCCEEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeeccCCeeEEE
Q 001932 709 EAKCINGLRAVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 787 (995)
Q Consensus 709 EA~~~~g~~~~f-~e~y~d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~ 787 (995)
||+++.+++.+. ++++++.||||+|+ + +.++||||||+|||+||.|+|++++++++|++||+
T Consensus 671 EA~~~~~l~L~~~~~~~~d~VRVV~IG----------------d-~~elCGGTHV~nTgeIg~fkIls~s~i~~GvrRIe 733 (739)
T 2ztg_A 671 EAERKFGFRLYQGGVPPGRKIRVVQVG----------------D-DVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFE 733 (739)
T ss_dssp HHHHHHCGGGGTTCCCCSSEEEEEEET----------------T-EEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEE
T ss_pred HHHHhCCHhhhcCCCCCCCeEEEEEEC----------------C-eeeCcCCcCcccHhHcCcEEEEEEeEEcCCEEEEE
Confidence 999985554433 45677899999998 4 89999999999999999999999999999999999
Q ss_pred EEech
Q 001932 788 AVTTG 792 (995)
Q Consensus 788 ~vtG~ 792 (995)
|+||.
T Consensus 734 avtG~ 738 (739)
T 2ztg_A 734 FAAGE 738 (739)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 99996
No 3
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00 E-value=5.1e-174 Score=1450.85 Aligned_cols=424 Identities=50% Similarity=0.895 Sum_probs=405.1
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCcccccccccccccccccCCCCCC
Q 001932 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (995)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~~~~~~~~r~~~~QkCiR~gGkhnD 137 (995)
+|++|||++||+||++|||++||||||||+||||||||||||+||||||+|+++|+ ++|||||||||||||||||
T Consensus 2 ~~~~eiR~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~~~sQkCiR~gGKHnD 76 (441)
T 3hy0_A 2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRN-----YSRATTSQRCVRAGGKHND 76 (441)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCS-----CSEEEEEEEEECEETTEEC
T ss_pred CCHHHHHHHHHHHHHhCCCeEcCCCCccCCCCCCceeecccchhhhhhhcCCCCCC-----CCCccccccceecCCCCCC
Confidence 57999999999999999999999999999999999999999999999999999885 5899999999999999999
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHch--hccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh--C
Q 001932 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLT--KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--L 213 (995)
Q Consensus 138 l~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt--~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~--~ 213 (995)
|||||+|+|||||||||||||||||||+|||+||||||| ++|||||+|||||||++ |+||++||++. |
T Consensus 77 lenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~Awe~LT~~~~lgl~~erL~vTvf~~--------D~Ea~~iW~~~~Gv 148 (441)
T 3hy0_A 77 LENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYES--------DDEAYEIWEKEVGI 148 (441)
T ss_dssp GGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETT--------CHHHHHHHHHTTCC
T ss_pred HHhhCCCCccccceeeccccccchhhHHHHHHHHHHHhCCCCccCCCHHHeEEEEeCC--------CHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999 67999999999999974 89999999995 9
Q ss_pred CCCCcccCC-------CCCCcccCCCCCCCcCceeeEeecCCCC--CCCCCCCCCCCCeeEEeeeeccccccCCCCcccc
Q 001932 214 PASRVLPFG-------CKDNFWEMGDTGPCGPCSEIHYDRTGNR--DAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP 284 (995)
Q Consensus 214 ~~~~i~~~~-------~~dNfW~mG~~GpcGPcsEi~yd~~~~~--~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~ 284 (995)
|++||+++| .+||||+||+||||||||||||||++.. +..+.+++||||||||||||||||||+++|+|.|
T Consensus 149 p~~rI~~~g~~~~~~y~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~r~~~g~l~p 228 (441)
T 3hy0_A 149 PRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEP 228 (441)
T ss_dssp CGGGEEEECSTTSBTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEE
T ss_pred CHHHeeecCccccccccccCchhcCCCcCCcCCeeEEEecCcccCCCCCCCCCCCCCCeEEEeeeeeeeeeecCCCcccc
Confidence 999999999 8999999999999999999999997422 1223578999999999999999999999999999
Q ss_pred CCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhheeeecCC
Q 001932 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADG 364 (995)
Q Consensus 285 Lp~~~IDTGmGlERl~~vlqg~~snydtDlf~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~f~i~DG 364 (995)
||+||||||||||||+|||||++||||||+|.|||++|++++|.. | ..++||||||||+||++|||+||
T Consensus 229 Lp~k~IDTGmGLERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-~----------~~~~s~rvIADH~R~~~f~iaDG 297 (441)
T 3hy0_A 229 LPKPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGAT-D----------LSNKSLRVIADHIRSCAFLIADG 297 (441)
T ss_dssp EEEEEEEEEEEHHHHHHHHTTCSSGGGSHHHHHHHHHHHHHHTCC-C----------TTCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCceecCCCHHHHHHHHcCCCccccchhHHHHHHHHHHHhCCC-c----------cccceeEEecchHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999974 3 13689999999999999999999
Q ss_pred CccCCCCcchHHHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001932 365 SCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEK 444 (995)
Q Consensus 365 ~~Psn~grgYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~ 444 (995)
|+|||+|||||||||||||+|+|+ +||++.|||++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++
T Consensus 298 v~PsNeGrGYVLRRilRRAvr~g~-~Lg~~~~fl~~Lv~~v~~~m~~~yPeL~~~~~~I~~vi~~EE~~F~~TL~~G~~~ 376 (441)
T 3hy0_A 298 VMPSNENRGYVLRRIIRRAVRHGN-MLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLAL 376 (441)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHH-HHTCCSCCGGGGHHHHHHHHGGGGHHHHHTHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred cccCCCCcchhHHHHHHHHHHHHH-HhCCCCccHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999995 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCChHHHHHhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhh
Q 001932 445 FKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSA 506 (995)
Q Consensus 445 ~~~~~~~~~~~~l~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~ 506 (995)
|++.++++++++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++
T Consensus 377 l~~~~~~~~~~~l~g~~af~LyDTyGfP~dLt~eia~e~g~~vD~~~F~~~m~~qr~rar~~ 438 (441)
T 3hy0_A 377 LDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438 (441)
T ss_dssp HHHHHHSCCSSEECHHHHHHHHHHHCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHhhhhcCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHhc
Confidence 99999877556899999999999999999999999999999999999999999999999975
No 4
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=8.8e-174 Score=1456.81 Aligned_cols=423 Identities=48% Similarity=0.895 Sum_probs=405.2
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCcccccccccccccccccCCCCCC
Q 001932 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (995)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~~~~~~~~r~~~~QkCiR~gGkhnD 137 (995)
|+++|||++||+||++|||++||||||||+|||||||||||||||||||+|+++|+ ++||||||||||+||||||
T Consensus 3 ~~~~eiR~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~t~sQkCiRag~~hND 77 (465)
T 1yfs_A 3 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRP-----YKRATSCQKCLRVSGKHND 77 (465)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCS-----CSEEEEEEEEECEETTEEC
T ss_pred CCHHHHHHHHHHHHHhCCCEEecCCCcccCCCCCcceeccchhhhhHHhcCCCCCC-----CCceeccccccccCCCccc
Confidence 89999999999999999999999999999999999999999999999999999886 5899999999999999999
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh--CCC
Q 001932 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPA 215 (995)
Q Consensus 138 l~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~--~~~ 215 (995)
|||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||++ |+||++||++. ||+
T Consensus 78 lenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~~lgl~~~rL~vTv~~~--------D~Ea~~iW~~~~G~p~ 149 (465)
T 1yfs_A 78 LEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKD--------DEEAYRIWNEHIGIPS 149 (465)
T ss_dssp GGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETT--------CHHHHHHHHTTTCCCG
T ss_pred HhhcCCCCCccchheeccccchhhhhHHHHHHHHHHHHHhhcCCCHHHeEEEEeCC--------CHHHHHHHHHhcCCCH
Confidence 99999999999999999999999999999999999999999999999999999974 89999999996 999
Q ss_pred CCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccccCCCCccccCCCCccccCch
Q 001932 216 SRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (995)
Q Consensus 216 ~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDTGmG 295 (995)
+||+++|.+||||+||+|||||||||||||++++++ +|||||||||||||||||++||+|.|||+||||||||
T Consensus 150 ~rI~~~g~~dNFW~mG~tGPCGPCsEI~yD~g~~~~-------~~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmG 222 (465)
T 1yfs_A 150 ERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYE-------GDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMG 222 (465)
T ss_dssp GGEEEECHHHHEEESSSSEEEEEEEEEEEECCTTSC-------HHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred HHeeeCCCcCCcccCCCCcCCCCCeEEEEccCCCCC-------CCCCEEEeeeeeeeEEEecCCCccccCCCCceecCcC
Confidence 999999999999999999999999999999987654 2789999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhheeeecCCCccCCCCcchH
Q 001932 296 FERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (995)
Q Consensus 296 lERl~~vlqg~~snydtDlf~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~f~i~DG~~Psn~grgYv 375 (995)
||||+|||||++||||||+|.|||++|++++|++ |.. + +..|+||||||||+||++|||+||++|||+|||||
T Consensus 223 LERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-Y~~----~--~~~d~s~rvIADH~R~~~f~I~DGv~PsN~GrGYV 295 (465)
T 1yfs_A 223 LERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGE----K--FETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295 (465)
T ss_dssp HHHHHHHHTTCSSGGGSTTTHHHHHHHHHHHCCC-TTS----C--HHHHHHHHHHHHHHHHHHHHHHTTCCCCSBHHHHH
T ss_pred HHHHHHHHcCCCccchhhhHHHHHHHHHHHhCCC-CCC----C--cccceeEEEEcchhhhhhhhhccccccCCCCcchH
Confidence 9999999999999999999999999999999985 741 1 45678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q 001932 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-- 453 (995)
Q Consensus 376 lRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~-- 453 (995)
||||||||+|+|+ +||++.|||++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++|++.+++++
T Consensus 296 LRRilRRavr~g~-~Lg~~~~fl~~Lv~~v~~~m~~~yPel~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~ 374 (465)
T 1yfs_A 296 IRRILRRAMRFGY-KLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEE 374 (465)
T ss_dssp HHHHHHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999995 6999999999999999999999999999999999999999999999999999999999998874
Q ss_pred -CCCCChHHHHHhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhh
Q 001932 454 -GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQN 508 (995)
Q Consensus 454 -~~~l~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~ 508 (995)
+++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++
T Consensus 375 ~~~~l~G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~rar~~~~ 430 (465)
T 1yfs_A 375 GRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHFK 430 (465)
T ss_dssp TCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHTTTTC--
T ss_pred CCCcCCHHHHHhhhhccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHHHHHHhhhh
Confidence 2369999999999999999999999999999999999999999999999998754
No 5
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=8e-49 Score=420.72 Aligned_cols=219 Identities=22% Similarity=0.252 Sum_probs=199.3
Q ss_pred ccccceeeeEEEEEEEeCCeeeeeecCCCeEEEEecceEEEEeeCCeeeccceeecccceEEEEeEEEeCCEEEEEEeec
Q 001932 538 KFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLT 617 (995)
Q Consensus 538 ~y~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~ivH~~~~~ 617 (995)
...|..+++|+|+++..+ ++.++|+||+|+|||+|||||+|+|+|. .++|.+|++.+|.++|.+.
T Consensus 9 ~d~y~~~~~a~V~~~~~~---------~~~~~vvLd~T~FYpegGGQ~~D~G~i~----~~~V~~v~~~~g~i~H~~~-- 73 (241)
T 3kew_A 9 EDQYIKEFKGEIIEVKEI---------DGKFHVLLDQTAFFPGGGGQMGDLGLID----GIKVLDVYEEEGKVYHVLE-- 73 (241)
T ss_dssp TCTTCCEEEECEEEEEEE---------TTEEEEEESEECCCCCBTTBCCCCEEET----TEEEEEEEEETTEEEEEES--
T ss_pred hCcccceeEEEEEEEEec---------CCeEEEEEeCCcccCCCCCCCCCEEEEe----eEEEEEEEEeCCEEEEEEC--
Confidence 345789999999999864 3568899999999999999999999994 5899999999999999986
Q ss_pred cCCCcCCCCCeEehh-------hHhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHH
Q 001932 618 EGAGRFSVGEEVICK-------LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIV 690 (995)
Q Consensus 618 ~~~~~l~~G~~V~~~-------~~m~~HTAtHLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~~ 690 (995)
+++++|+.|.+. ++|++|||+|||++|++++||.+ +.|+++.++++||||+ .++|++++++||++|
T Consensus 74 ---~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~--~~lt~e~l~~IE~~v 146 (241)
T 3kew_A 74 ---KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV--GFLDEKTIREAEKEA 146 (241)
T ss_dssp ---SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE--SCCCHHHHHHHHHHH
T ss_pred ---CcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCC--eEeccccCCeEEEEEC--CCCCHHHHHHHHHHH
Confidence 678899999998 89999999999999999999986 6999999999999999 689999999999999
Q ss_pred HHHHHccCCeEEEEcCHHHHhcccCchhhcCccCCCCEEEEEeCCcccccccCCCCccccceeeeeccCCCccccccccc
Q 001932 691 NEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEA 770 (995)
Q Consensus 691 NeiI~~nlpV~~~~~~~eEA~~~~g~~~~f~e~y~d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~ 770 (995)
|++|++|+||++.+++++||+++ +++++ .++|++.||||+|+ ++|.++||||||+|||+||.
T Consensus 147 n~~I~~~~pV~~~~~~~~eA~~~-~~~~~-~e~~~~~VRvv~ig----------------~~~~~~CgGtHV~~TgeIg~ 208 (241)
T 3kew_A 147 NRLIFENLEVKSYAPSKKELKKV-KTRRA-LPKTDEEIRIVEIV----------------GLDLNACCGVHPRNTRDLQV 208 (241)
T ss_dssp HHHHHHTCBEEEECCCTTTTTTC-CCSSC-CCCCSSCCCEEEET----------------TTEEEECCSCCCSBSGGGCC
T ss_pred HHHHHcCCCEEEEEcCHHHHHhc-Chhhc-CCccCCcEEEEEEC----------------CeEEEcCCCCCcCCHhhcCC
Confidence 99999999999999999999997 57775 56688999999998 68999999999999999999
Q ss_pred EEEEeeeeccCCeeEEEEEechHHHHH
Q 001932 771 FALLSEEGIAKGIRRITAVTTGLAYKA 797 (995)
Q Consensus 771 fkI~~~~~~~~G~~RI~~vtG~~A~~~ 797 (995)
|+|++.++++ |.+||+|+||.+|++.
T Consensus 209 fkI~~~~~~~-~~~RI~~~~G~~a~~~ 234 (241)
T 3kew_A 209 IKIRRWEKHK-NATRIEYVAGNRAVSE 234 (241)
T ss_dssp EEEEEEEEET-TEEEEEEEEGGGGC--
T ss_pred EEEEEEeccC-CcEEEEEEECHHHHhc
Confidence 9999999975 5569999999999864
No 6
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00 E-value=4.6e-44 Score=378.21 Aligned_cols=194 Identities=29% Similarity=0.370 Sum_probs=176.3
Q ss_pred cccceeeeEEEEEEEeCCeeeeeecCCCeEEEEecceEEEEeeCCeeeccceeecccceEEEEeEEEe-CCEEEEEEeec
Q 001932 539 FIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIY-GGFVIHIGSLT 617 (995)
Q Consensus 539 y~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~-~g~ivH~~~~~ 617 (995)
..|..+++|+|+++.. + +|+||+||||||+||||+|+|+|. + ++|.+|++. +|.++|.+..
T Consensus 12 d~y~~~~~a~V~~~~~-----------~--~vvld~T~Fype~GGQ~~D~G~i~---~-~~V~~v~~~~~~~i~H~~~~- 73 (216)
T 2e1b_A 12 DAYLKEAKGRVLEIRD-----------N--AILLDQTIFYPTGGGQPHDRGTIN---G-VEVLDVYKDEEGNVWHVVKE- 73 (216)
T ss_dssp CTTCCEEEECBCCCCS-----------S--CCCBSCCCSCCCCTTCCCCCEEET---T-EEEEEEECCTTCCCEEEESC-
T ss_pred CcccceeeEEEEEEeC-----------C--EEEEeCCCccCCCCCCCCCEEEEc---c-EEEEEEEECcCCEEEEEEcc-
Confidence 3478899999998831 1 599999999999999999999995 3 999999997 8999999874
Q ss_pred cCCCcCCCCCeEehh-------hHhhhchHHHHHHHHHHHHhCCc-cccccccccCCceEEEecCCCCCCHHHHHHHHHH
Q 001932 618 EGAGRFSVGEEVICK-------LIAPNHTCTHMLNFALREVLGDH-VDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESI 689 (995)
Q Consensus 618 ~~~~~l~~G~~V~~~-------~~m~~HTAtHLL~aAlr~vlg~~-v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~ 689 (995)
. +.+++|++|.+. ++|++|||+|||++|++++||.+ +.+.|+++.++++||||++++++|++ +++||++
T Consensus 74 ~--~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~lt~e-l~~IE~~ 150 (216)
T 2e1b_A 74 P--EKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKY-KEQIISL 150 (216)
T ss_dssp G--GGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGG-HHHHHHH
T ss_pred C--CCcCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCCCCHH-HHHHHHH
Confidence 3 578999999998 89999999999999999999973 45679999999999999998889987 9999999
Q ss_pred HHHHHHccCCeEEEEcCHHHHhcccCchhhcCccCCCCEEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccc
Q 001932 690 VNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAE 769 (995)
Q Consensus 690 ~NeiI~~nlpV~~~~~~~eEA~~~~g~~~~f~e~y~d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg 769 (995)
||++|++|+||++.++++ ||+|+|+ ++|.++||||||+|||+||
T Consensus 151 vn~~I~~~~pv~~~~~~~--------------------vRvv~ig----------------~~~~~~CgGtHV~~TgeIg 194 (216)
T 2e1b_A 151 FNKYVDEGGEVKIWWEGD--------------------RRYTQIR----------------DFEVIPCGGTHVKDIKEIG 194 (216)
T ss_dssp HHHHHHHCCBEEEEESSS--------------------CEEEEET----------------TSCEECCCSCCCSBGGGTC
T ss_pred HHHHHhcCCCEEEEEcCC--------------------EEEEEEC----------------CEEEECCCCCCcccHhhCc
Confidence 999999999999888764 8999998 6899999999999999999
Q ss_pred cEEEEeeeeccCCeeEEEEE
Q 001932 770 AFALLSEEGIAKGIRRITAV 789 (995)
Q Consensus 770 ~fkI~~~~~~~~G~~RI~~v 789 (995)
.|+|++++++++|++||+++
T Consensus 195 ~fkI~~~~~~~~g~rRi~~~ 214 (216)
T 2e1b_A 195 HIKKLKRSSIGRGKQRLEMW 214 (216)
T ss_dssp CEEEEEEEEEETTEEEEEEE
T ss_pred eEEEEEEeEEcCCEEEEEEE
Confidence 99999999999999999986
No 7
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.95 E-value=1e-28 Score=299.64 Aligned_cols=233 Identities=18% Similarity=0.257 Sum_probs=194.2
Q ss_pred ceEEEEeeCCeeeccceeecccceEEEEeEEEeCCEEEEEEeeccCCCcCCCCCeEehhhHhhhchHHHHHHHHHHHHhC
Q 001932 574 SSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKLIAPNHTCTHMLNFALREVLG 653 (995)
Q Consensus 574 ~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~ivH~~~~~~~~~~l~~G~~V~~~~~m~~HTAtHLL~aAlr~vlg 653 (995)
+.+..+..+|++.|+.+.+..++.+++++..+.. + .++++|||+|||++|++++||
T Consensus 35 ~~~v~~~vng~~~dl~~~l~~d~~v~~~~~~~~~-------------g-----------~~~~~HSa~HlL~~A~~~~~~ 90 (645)
T 1nyr_A 35 KKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEE-------------A-----------LEVLRHSTAHLMAHAIKRLYG 90 (645)
T ss_dssp HHCCEEEETTEEECTTSCCCSCBCCCEECTTSHH-------------H-----------HHHHHHHHHHHHHHHHHHHSS
T ss_pred cCeEEEEECCEEEeCCcccCCCCeEEEeeccchh-------------H-----------HHHHHHHHHHHHHHHHHHHcC
Confidence 4445566799999999998888888877655433 2 799999999999999999999
Q ss_pred CccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhcccCc----hhhcCccCC--CC
Q 001932 654 DHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL----RAVFGEVYP--DP 727 (995)
Q Consensus 654 ~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~----~~~f~e~y~--d~ 727 (995)
.+..+.|+.+ ++++||||+++.++|++++.+||++||++|++|+||++.+++++||.++.+- ..++.. .+ +.
T Consensus 91 ~~~~~~g~~~-~~g~~~Df~~~~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~-~~~~~~ 168 (645)
T 1nyr_A 91 NVKFGVGPVI-EGGFYYDFDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDA-IPEDEN 168 (645)
T ss_dssp SCEECCCCEE-TTEEEEEEECSSCCCSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCC-CSSSCC
T ss_pred CcEEEECCcc-CCceEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhc-CCCCCe
Confidence 8889999766 9999999998889999999999999999999999999999999999987321 011111 12 58
Q ss_pred EEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeee-------ccCCeeEEEEEechHHHHHHHH
Q 001932 728 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEG-------IAKGIRRITAVTTGLAYKAFEA 800 (995)
Q Consensus 728 VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~-------~~~G~~RI~~vtG~~A~~~~~~ 800 (995)
|||++++ ++ .++||||||+|||+||.|+|+++++ .++.++||++++.... .+
T Consensus 169 vrv~~~g----------------~~-~dlC~G~Hv~~Tg~i~~fkl~~~~~a~~~~~~~~~~l~ri~g~~~~~~----~~ 227 (645)
T 1nyr_A 169 VTLYSQG----------------DF-TDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDK----KE 227 (645)
T ss_dssp CEEEEET----------------TE-EEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEEESSH----HH
T ss_pred eEEEEEC----------------CE-EEecCCcccCCCCCCceEEEeeeCchHHHHHhHHHHHHHHHHHhcCCH----HH
Confidence 9999998 45 7899999999999999999999974 3678999999988754 35
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHH--hhh-cCCCccCCCChHHHHHHHHHHHHH
Q 001932 801 ACSLEKEVDDASKIEGSLLEKTVASL--KSK-VDGAAIPAPKKADIRAKIALLQNQ 853 (995)
Q Consensus 801 ~~~~~~~l~~~~~~~~~~i~k~l~~~--~~~-~~~~~~~~~~~~~l~~~l~~l~~e 853 (995)
+.++++.++++..++|+++++++..| .+. .+|...|+|.+..+.+.|+++..+
T Consensus 228 l~~~~~~l~ea~~rdhr~lg~~l~l~~~~~~~~~G~~~~lP~g~~~~~~l~~~ir~ 283 (645)
T 1nyr_A 228 LKAHLQMLEERKERDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVD 283 (645)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHTTCEEEETTTEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhHHHHhhhcceEEecccCCCceeEECCCHHHHHHHHHHHHHH
Confidence 66777888899999999999998754 444 578999999999999988887554
No 8
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.95 E-value=7e-28 Score=256.06 Aligned_cols=175 Identities=19% Similarity=0.298 Sum_probs=144.6
Q ss_pred eEEEEeeCCeeeccceeecccceEEEEeEEEeCCEEEEEEeeccCCCcCCCCCeEehhhHhhhchHHHHHHHHHHHHhCC
Q 001932 575 SSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKLIAPNHTCTHMLNFALREVLGD 654 (995)
Q Consensus 575 T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~ivH~~~~~~~~~~l~~G~~V~~~~~m~~HTAtHLL~aAlr~vlg~ 654 (995)
.+..+..+|++.|+.+.+.+++.+++++..+.. + ..|++|||+|||++|++++||.
T Consensus 34 ~~vaakvNg~l~dL~~~l~~~~~ve~it~~~~~-------------g-----------~~~~~HS~~HlL~~A~~~~~~~ 89 (224)
T 1tke_A 34 ACIAGRVNGELVDACDLIENDAQLSIITAKDEE-------------G-----------LEIIRHSCAHLLGHAIKQLWPH 89 (224)
T ss_dssp HCCEEEETTEEEETTCCBCSCEEEEEECTTSHH-------------H-----------HHHHHHHHHHHHHHHHHHHSTT
T ss_pred ceEEEEECCEEeccceEcCCCCeEEEEecCchh-------------H-----------HHHHHHHHHHHHHHHHHHHCCC
Confidence 344566789999998888777777777654433 2 7899999999999999999985
Q ss_pred ccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhcccCc------hhhcCc-c-CCC
Q 001932 655 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL------RAVFGE-V-YPD 726 (995)
Q Consensus 655 ~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~------~~~f~e-~-y~d 726 (995)
.....| ++.++++||||+++.++|+++|.+||++||++|++|+||++.+++++||.++... ..++++ . +.+
T Consensus 90 ~~~~~g-~~~~~g~y~d~~~~~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~ 168 (224)
T 1tke_A 90 TKMAIG-PVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDD 168 (224)
T ss_dssp CEECCC-CEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred cEEEEC-CccCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCC
Confidence 333456 6779999999998889999999999999999999999999999999999986321 234433 3 457
Q ss_pred CEEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeec-------cCCeeEEEEEec
Q 001932 727 PVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTT 791 (995)
Q Consensus 727 ~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G~~RI~~vtG 791 (995)
.||+++++ ++ .++||||||+|||+||.|+|+++++. +++++|||+++.
T Consensus 169 ~v~vy~~g----------------~~-~dlC~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a~ 223 (224)
T 1tke_A 169 KPGLYFHE----------------EY-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAW 223 (224)
T ss_dssp CCEEEEET----------------TE-EEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEEC
T ss_pred eeEEEEeC----------------CE-EEECCCcCCCcCcccceEEEEEecceeEcCCCCCceeEEEEEecc
Confidence 89999998 44 79999999999999999999999874 678999999975
No 9
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.94 E-value=1.3e-27 Score=289.29 Aligned_cols=234 Identities=16% Similarity=0.246 Sum_probs=190.9
Q ss_pred ceEEEEeeCCeeeccceeecccceEEEEeEEEeCCEEEEEEeeccCCCcCCCCCeEehhhHhhhchHHHHHHHHHHHHhC
Q 001932 574 SSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKLIAPNHTCTHMLNFALREVLG 653 (995)
Q Consensus 574 ~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~ivH~~~~~~~~~~l~~G~~V~~~~~m~~HTAtHLL~aAlr~vlg 653 (995)
+.+..+..+|++.|+.+.+..++.+++++..+.+ + ..|++|||+|||++|++++||
T Consensus 33 ~~~~~~~vng~~~dl~~~l~~d~~~~~~~~~~~~-------------~-----------~~~~~HSa~HlL~~Al~~~~~ 88 (642)
T 1qf6_A 33 KACIAGRVNGELVDACDLIENDAQLSIITAKDEE-------------G-----------LEIIRHSCAHLLGHAIKQLWP 88 (642)
T ss_dssp HHCSEEEETTEEEETTSCBCSCEECCEECTTSHH-------------H-----------HHHHHHHHHHHHHHHHHHHCT
T ss_pred hheEEEEECCEEeccccccCCCceEEEeecCcHH-------------H-----------HHHHHHHHHHHHHHHHHHhCC
Confidence 3444566799999999988877777766654333 2 789999999999999999998
Q ss_pred CccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhcccCc------hhhc-CccCC-
Q 001932 654 DHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL------RAVF-GEVYP- 725 (995)
Q Consensus 654 ~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~------~~~f-~e~y~- 725 (995)
....+.|+++ ++++||||+++.++|++++.+||++||++|++|+||++.+++++||.++... ..++ ++.++
T Consensus 89 ~~~~~~G~~i-~~gfy~Df~~~~~~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~ 167 (642)
T 1qf6_A 89 HTKMAIGPVI-DNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHD 167 (642)
T ss_dssp TCEECCCCEE-TTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTT
T ss_pred CcEEEECCcc-CCeeEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCC
Confidence 7545889655 5889999998889999999999999999999999999999999999987221 1122 22222
Q ss_pred CCEEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeec-------cCCeeEEEEEechHHHHHH
Q 001932 726 DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTTGLAYKAF 798 (995)
Q Consensus 726 d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G~~RI~~vtG~~A~~~~ 798 (995)
+.||+++++ ++ .++||||||+|||+||.|+|++.++. +..++||++++.+. .
T Consensus 168 ~~v~vy~~g----------------~~-~dlC~GpHv~~Tg~I~~fkl~~~~~~yw~g~~~~~~l~r~~g~~~~~----~ 226 (642)
T 1qf6_A 168 DKPGLYFHE----------------EY-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWAD----K 226 (642)
T ss_dssp CCCEEEEET----------------TE-EECCSSCCCSBGGGCCSEEEEEEEEEEGGGCTTSCEEEEEEEEECSS----H
T ss_pred CceEEEEEC----------------CE-EEecCCCccCCCCcceeEEEeeeccccccCccCCceeEeeeccccCc----h
Confidence 579999998 44 79999999999999999999999983 55788999997663 3
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHH--HhhhcCCCccCCCChHHHHHHHHHHHHH
Q 001932 799 EAACSLEKEVDDASKIEGSLLEKTVAS--LKSKVDGAAIPAPKKADIRAKIALLQNQ 853 (995)
Q Consensus 799 ~~~~~~~~~l~~~~~~~~~~i~k~l~~--~~~~~~~~~~~~~~~~~l~~~l~~l~~e 853 (995)
+++.++++.++++..++|++++++++. +.+..+|...|+|.+..+.+.|+++..+
T Consensus 227 ~~l~~~~~~~eea~~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~r~ 283 (642)
T 1qf6_A 227 KALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRS 283 (642)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhhhccccCCHHHHHHhcCccccccCCCCcEEECCcHHHHHHHHHHHHHH
Confidence 455667788888899999999998764 3455789999999999999998888654
No 10
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.93 E-value=9.3e-26 Score=226.80 Aligned_cols=143 Identities=22% Similarity=0.234 Sum_probs=118.3
Q ss_pred hHhhhchHHHHHHHHHHHHhCCccccccc-cccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHh
Q 001932 633 LIAPNHTCTHMLNFALREVLGDHVDQKGS-VVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAK 711 (995)
Q Consensus 633 ~~m~~HTAtHLL~aAlr~vlg~~v~q~Gs-~v~~d~~r~Df~~~~~lt~eeL~~IE~~~NeiI~~nlpV~~~~~~~eEA~ 711 (995)
.+|++|||+|||++|++++||.++.+.++ .+.+++.|+||+.+.++|++++.+||++||++|++|+||++.+++++||.
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA~ 83 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAE 83 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 78999999999999999999954445544 45555788888877789999999999999999999999999999999999
Q ss_pred cccCchhhcC-ccCC---CCEEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeee-ccCCeeEE
Q 001932 712 CINGLRAVFG-EVYP---DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEG-IAKGIRRI 786 (995)
Q Consensus 712 ~~~g~~~~f~-e~y~---d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~-~~~G~~RI 786 (995)
++.+.. ++. ..+| +.||+|+|+ ++|.++||||||+|||+||.|+|+++++ .+++..||
T Consensus 84 ~~f~~~-~~~~~~~~~~~~~vrv~~ig----------------~~~~~~C~GtHv~~Tg~I~~fki~~~~~~~~~~~l~v 146 (157)
T 1v4p_A 84 KMFGED-MYDLFPVPEDVRILKVVVIE----------------DWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEI 146 (157)
T ss_dssp HHHGGG-GSCSSCCCTTCCEEEEEEET----------------TTEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEE
T ss_pred HhhCcc-ccccccCCCCCCeEEEEEEC----------------CeeEeCCCCCccCChhhcceEEEEEEEecCCCcEEEE
Confidence 975442 222 1123 469999998 6789999999999999999999999886 34556689
Q ss_pred EEEech
Q 001932 787 TAVTTG 792 (995)
Q Consensus 787 ~~vtG~ 792 (995)
.+..++
T Consensus 147 ~~~v~~ 152 (157)
T 1v4p_A 147 HFELLE 152 (157)
T ss_dssp EEEEC-
T ss_pred EEEEee
Confidence 988764
No 11
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=99.82 E-value=1.7e-19 Score=183.51 Aligned_cols=170 Identities=16% Similarity=0.159 Sum_probs=140.4
Q ss_pred echHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhhhcCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001932 790 TTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKA 869 (995)
Q Consensus 790 tG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~e~k~l~kel~~l~~~~a 869 (995)
.|.+|++++.+.++.+++++.++++ ++.++.++++++++++++++|++.+++.+++
T Consensus 1 ~G~~A~~~~~~~~~~l~~~a~~Lk~------------------------~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 1 MGEAAIEAVEEMERLLREASSILRV------------------------EPAKLPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp -CGGGTHHHHHHHHHHHHHHHTTTC------------------------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCC------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999988888888887765 3358889999999999999999999999999
Q ss_pred HHHHHHHHHHhh-cCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEeeCCCCeEEEEEecCCCcccccCCCHHH
Q 001932 870 VKVATETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSE 948 (995)
Q Consensus 870 ~~~a~~l~~~~~-~~~~~~iv~~~~~~~d~~~L~~~a~~l~~~~~~~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~A~~ 948 (995)
...+.++..+.. .++.++++..+ +.|++.|+.+++.+++. +..+++++. . ++ +.++++++++ +++|++
T Consensus 57 ~~~~~~l~~~~~~i~g~~~~~~~~--~~d~~~lr~~~~~l~~~-~~vv~l~~~-~-~~-~~~v~~~~~~-----~~~a~~ 125 (171)
T 2zvf_A 57 DLWADILMERAEEFDSMKVVAEVV--DADMQALQKLAERLAEK-GAVGCLMAK-G-EG-KVFVVTFSGQ-----KYDARE 125 (171)
T ss_dssp HHHHHHHHTTCEESSSCEEEEEEC--SCCHHHHHHHHHHHHHT-TEEEEEEEE-C-SS-SEEEEEEESS-----SSCHHH
T ss_pred HHHHHHHHhhcEEeCCEEEEEEEe--CCCHHHHHHHHHHHhcC-CCEEEEEEc-C-CC-eEEEEEECCC-----CCCHHH
Confidence 888788766543 57888887766 57999999999999887 434444443 2 45 6666776542 599999
Q ss_pred HHHHHhhccCCCCCCCCCCCcccccCCcCCHHHHHHHHHHHHHhhhC
Q 001932 949 WLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKLR 995 (995)
Q Consensus 949 l~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~~~~~~l~ 995 (995)
|++++++.+||||| |+|+||||+|++++++++|++.++++++++++
T Consensus 126 lvk~~~~~~gGkGG-Gkp~~AQggg~~~~~l~~al~~~~~~~~~~~~ 171 (171)
T 2zvf_A 126 LLREIGRVAKGSGG-GRKDVAQGAVQQLLDREEMLDVIFRFLSEHEG 171 (171)
T ss_dssp HHHHHHHHHTEECC-BCSSEEEEEESSCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCC-CcHHHcccCCCChhHHHHHHHHHHHHHHhhcC
Confidence 99999999999999 99999999999999999999999999987653
No 12
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus}
Probab=99.60 E-value=2.7e-15 Score=142.28 Aligned_cols=105 Identities=19% Similarity=0.278 Sum_probs=91.9
Q ss_pred cCCccEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEeeCCCCeEEEEEecCCCcccccCCCHHHHHHHHhhccCCCC
Q 001932 882 SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRC 961 (995)
Q Consensus 882 ~~~~~~iv~~~~~~~d~~~L~~~a~~l~~~~~~~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~A~~l~k~v~~~lgGkG 961 (995)
.++.++++.+++ +.|++.||.+++.++++....+++|++. .++++.+++++++++ ..+ ++|++|++++++.+||||
T Consensus 6 i~g~~~~~~~~~-~~d~~~Lr~~~~~l~~~~~~~vvvl~~~-~~~kv~~v~~v~~~~-~~~-~~A~~lvk~v~~~~gGkG 81 (111)
T 3g98_A 6 VGDFTLHYGVFE-EVEPEELRNLADMLRQRTKKDVVFIASR-KGDKINFVIGVSKEI-SDK-VNAKEVIREVGKVLKGGG 81 (111)
T ss_dssp ETTEEEEEEEEE-SCCHHHHHHHHHHHTTSSSSEEEEEEEE-ETTEEEEEEEECGGG-TTT-SCHHHHHHHHHHHTTBCC
T ss_pred ECCEEEEEEEeC-CCCHHHHHHHHHHHHhhcCCcEEEEEEe-cCCcEEEEEEECHHH-hcc-CCHHHHHHHHHHHcCCCc
Confidence 578888888887 7899999999999998544566666653 357999999999987 655 999999999999999999
Q ss_pred CCCCCCCcccccCCcCCHHHHHHHHHHHHH
Q 001932 962 GKGKGGLASGQGTDAAQVTPAMDLAAEFAA 991 (995)
Q Consensus 962 G~Gk~~~AQG~g~~~~~l~~al~~a~~~~~ 991 (995)
| |||+||||+|++++++++|++.++++++
T Consensus 82 G-Gkp~~AQggg~~~~~l~~al~~~~~~l~ 110 (111)
T 3g98_A 82 G-GRADLAQGGGKAPDKFPEAVKLLKEILS 110 (111)
T ss_dssp E-ECSSEEEEEESCGGGHHHHHHHHHHHHH
T ss_pred C-CcHHHeeecCCCHHHHHHHHHHHHHHhc
Confidence 9 9999999999999999999999999875
No 13
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=94.26 E-value=0.067 Score=56.91 Aligned_cols=180 Identities=20% Similarity=0.275 Sum_probs=102.4
Q ss_pred CcCCCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCCCCCCccccccccccccccccc
Q 001932 53 PQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRA 131 (995)
Q Consensus 53 ~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~-f~G~~~p~~~~~~~~r~~~~QkCiR~ 131 (995)
-.+..|+-.+|--+--+|..++|..++-++.+= .|--.|-|. ||..--|. | -+++-+|+|-|.
T Consensus 20 ~~~~~~~fQ~iIl~Lq~fWa~qGC~i~QPyD~E-----------vGAGT~hPaTfLRalGpe-P----w~~AYVqPsRRP 83 (311)
T 3rf1_A 20 FQSNAMTFSQMILNLQNYWQEQGCAIMQPYDMP-----------AGAGTFHPATFLRSLGKK-P----WAAAYVAPSRRP 83 (311)
T ss_dssp CGGGSCCHHHHHHHHHHHHHTTTCEECCCCSSC-----------CSSGGGSHHHHTTTSSSS-C----EEEEEEEEEECG
T ss_pred eccCcCcHHHHHHHHHHHHHHCCCEEECCcccc-----------ccCCCCCHHHHHHhcCCC-c----ceeeeeccCCCC
Confidence 345678999999999999999999998876542 234478885 54333331 1 378999999997
Q ss_pred C-CCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHH
Q 001932 132 G-GKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWL 210 (995)
Q Consensus 132 g-GkhnDl~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~ 210 (995)
. |+.- ||.-+ -.||.=|..+=-=|-.+ ..+.=.+-| +.+||+|.
T Consensus 84 ~DGRYG--eNPNR-Lq~yyQfQVilKPsP~n-----iQeLYL~SL-~alGId~~-------------------------- 128 (311)
T 3rf1_A 84 TDGRYG--ENPNR-LGAYYQFQVLIKPSPDN-----IQELYLKSL-ENLGFDLK-------------------------- 128 (311)
T ss_dssp GGCCTT--CCSSC-CSEEEEEEEEEESCCTT-----HHHHHHHHH-HHTTCCGG--------------------------
T ss_pred CCCCcC--CCchh-hhhheeeEEEEcCCCcc-----HHHHHHHHH-HHhCCCcc--------------------------
Confidence 2 1111 22222 23444444432222221 111111111 23555553
Q ss_pred hhCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccccCCCCccccCCCCcc
Q 001932 211 KFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHV 290 (995)
Q Consensus 211 ~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~Lp~~~I 290 (995)
+|=+|| .+|| |+-=.-|--|-==|+--| | +||=- |+=|.+ ..| + ++..-.+
T Consensus 129 -----~HDIRF-VEDn-WEsPTLGAWGLGWEVWld---G--------------MEVTQ--FTYFQQ-vGG-i-~c~pv~~ 179 (311)
T 3rf1_A 129 -----SHDIRF-VEDN-WESPSLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQ-VGG-I-AVDLVSA 179 (311)
T ss_dssp -----GSCEEE-EECC-EEETTTTEEEEEEEEEET---T--------------EEEEE--EEEEEE-ETT-E-ECSSCCE
T ss_pred -----ccCeeE-eccC-CCCCcccccccceEEEEc---C--------------eeEee--eeeeee-eCC-c-cccccce
Confidence 333455 3555 542112444544455433 1 55542 333333 334 3 3455567
Q ss_pred ccCchHHHHHHHHhCCCCCccc
Q 001932 291 DTGLGFERLTSILQNKMSNYDT 312 (995)
Q Consensus 291 DTGmGlERl~~vlqg~~snydt 312 (995)
.-=+||||||+.+||+.|+||.
T Consensus 180 EITYGLERlamylQ~vd~vyDl 201 (311)
T 3rf1_A 180 EITYGLERIAMYLQNVDNVYDI 201 (311)
T ss_dssp EEEEEHHHHHHHHTTCSSGGGS
T ss_pred eeehhHHHHHHHHhCCCeeeec
Confidence 7789999999999999999996
No 14
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=91.93 E-value=0.65 Score=50.79 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=63.4
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccc-----cccccc----cccccCCCCCCC-----ccccccccccc
Q 001932 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFAN-----AGMNQY----KPIFLGTADPNT-----QLSKLTRACNT 125 (995)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftn-----AGm~~f----k~~f~G~~~p~~-----~~~~~~r~~~~ 125 (995)
-+.|.+.+-+||.++|...|..--+.+.+| ++-.. |=|.++ ++++|-++ |.- -.++..|+-..
T Consensus 18 rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~--~~~~~~~~e~a~~f~~~~~~~~~~L~~S-pe~~~~~l~~~g~~rvf~i 94 (294)
T 1nnh_A 18 QTKILEYMTDFFVKEGFKWLLPVIISPITD--PLWPDPAGEGMEPAEVEIYGVKMRLTHS-MILHKQLAIAMGLKKIFVL 94 (294)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCCEESCCC--CCCSCTTCCCCCCCEEEETTEEEEECSC-SHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEEccc--hhccCCCCCcceeEEEEcCCCCEEeccC-hHHHHHHHhhcCccceEEE
Confidence 346778888999999999887544444311 11111 112111 12334221 100 01124688888
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHchhcc
Q 001932 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTKVY 179 (995)
Q Consensus 126 QkCiR~gGkhnDl~~VG~t~rH~TfFEMlG-n~SfgdYfK~eai~~awe~lt~~l 179 (995)
-+|.|. +=+.. .|+||..=|-|++ -.+|.|| .|.+..+.+++...+
T Consensus 95 g~~FR~-----E~pq~-~~~RH~~EFtqle~e~~~~~~--~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 95 SPNIRL-----ESRQK-DDGRHAYEFTQLDFEVERAKM--EDIMRLIERLVYGLF 141 (294)
T ss_dssp EEEECC-----CCGGG-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHH
T ss_pred EccEeC-----CCCCC-CCCccccceeEEEEEecCCCH--HHHHHHHHHHHHHHH
Confidence 999995 42213 2579998888885 4455564 588888888877543
No 15
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=82.57 E-value=0.44 Score=50.47 Aligned_cols=172 Identities=20% Similarity=0.289 Sum_probs=98.8
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccc-cc---CCCCCCCcccccccccccccccccC-
Q 001932 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FL---GTADPNTQLSKLTRACNTQKCIRAG- 132 (995)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~-f~---G~~~p~~~~~~~~r~~~~QkCiR~g- 132 (995)
|--.+|--+--+|..++|..++-++.+= .|--.|-|. || |.++ -+++-+|+|.|..
T Consensus 13 ~~fQ~iIl~Lq~fWa~~GC~i~QpyD~E-----------vGAGT~~PaTfLRaLGpep--------w~~AYVqPsRRP~D 73 (298)
T 1j5w_A 13 MYLQDVIMKLNDFWASKGCLLEQPYDME-----------VGAGTFHPATFFGSLRKGP--------WKVAYVQPSRRPTD 73 (298)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCSSC-----------CSSGGGSHHHHTGGGCSSC--------EEEEEEEEEECCC-
T ss_pred HHHHHHHHHHHHHHHHCCCEEEcCcccc-----------cccccCCHHHHHHhcCCCc--------ceeeeeccCCCCCC
Confidence 4567888899999999999998876542 244578884 43 5432 3689999999972
Q ss_pred CCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh
Q 001932 133 GKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF 212 (995)
Q Consensus 133 GkhnDl~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~ 212 (995)
|+.- ||.-+ -.||.=|..+=-=|-.+ ..+.=.+-| +.+||+|.
T Consensus 74 GRYG--eNPNR-Lq~y~QfQVilKPsP~n-----iQeLYL~SL-~alGid~~---------------------------- 116 (298)
T 1j5w_A 74 GRYG--ENPNR-LQRYFQYQVIIKPSPEN-----SQELYLESL-EYLGINLK---------------------------- 116 (298)
T ss_dssp ------CCTTC-CSEEEEEEEEEESCCSS-----HHHHHHHHH-HHTTCCTT----------------------------
T ss_pred CCcC--CCchh-hhhheeeEEEECCCCcc-----HHHHHHHHH-HHhCCCcc----------------------------
Confidence 1111 22222 23444444432223322 111111111 23455554
Q ss_pred CCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccccCCCCccccCCCCcccc
Q 001932 213 LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDT 292 (995)
Q Consensus 213 ~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDT 292 (995)
+|=+|| .+|| ||-=.-|.-|-==|+--| | +||=- |+=|.+ ..| + ++..-.+.-
T Consensus 117 ---~HDIRF-VEDn-WEsPTLGAwGLGWEVWld---G--------------MEITQ--FTYFQQ-vGG-i-~c~pv~~EI 169 (298)
T 1j5w_A 117 ---EHDIRF-VEDN-WESPTLGAWGVGWEVWLD---G--------------MEITQ--FTYFQQ-IGG-I-SLKDIPLEI 169 (298)
T ss_dssp ---TSCEEE-EEEC-CEEGGGTEEEEEEEEEET---T--------------EEEEE--EEEEEE-BTT-B-CCSSCCEEE
T ss_pred ---cCCcee-eccC-CCCCccccccccceeeEc---c--------------eeeeh--hhhhhh-cCC-c-ccCccceee
Confidence 344555 3566 442112555545566543 1 66653 333333 333 3 455557778
Q ss_pred CchHHHHHHHHhCCCCCccc
Q 001932 293 GLGFERLTSILQNKMSNYDT 312 (995)
Q Consensus 293 GmGlERl~~vlqg~~snydt 312 (995)
=+||||||+.+||+.|+||.
T Consensus 170 TYGLERiamylQ~vd~vydl 189 (298)
T 1j5w_A 170 TYGLERIAMYLQGVDNVYEV 189 (298)
T ss_dssp EEEHHHHHHHHHTCSSGGGC
T ss_pred cccHHHHHHHHhCCCceecc
Confidence 89999999999999999996
No 16
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=69.69 E-value=15 Score=44.58 Aligned_cols=84 Identities=19% Similarity=0.145 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHhccCCcEEEEEeeCCCCeEEEEEecCCCcccccCCCHHHHHHHHhhccCCCCCCCCCCCcccccC
Q 001932 895 GLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGT 974 (995)
Q Consensus 895 ~~d~~~L~~~a~~l~~~~~~~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~A~~l~k~v~~~lgGkGG~Gk~~~AQG~g~ 974 (995)
+--...+-.+|..+.+..+.++++++. ++.. +.+ ..++|+.+++..+...++| || | -.+|=|-.-
T Consensus 338 ~wh~GViGIVAsrl~e~~~rP~iv~a~----~kgS---aRS-----i~g~nl~~~L~~~~~ll~~-gG-G-H~~AAG~si 402 (666)
T 2zxr_A 338 EGHPGVMGIVASRILEATLRPVFLVAQ----GKGT---VRS-----LAPISAVEALRSAEDLLLR-YG-G-HKEAAGFAM 402 (666)
T ss_dssp TCCHHHHHHHHHHHHHHHCSCEEEEET----TEEE---EEC-----CTTCCHHHHHHHTGGGCSE-EE-E-CSSEEEEEC
T ss_pred CcCcccHHHHHHHHHHHhCCCEEEEEC----CEEE---EEC-----CCCccHHHHHHHHHhhCcc-cC-C-ChHHccccc
Confidence 445667777888888865667777763 2422 222 1379999999998876654 44 3 446655555
Q ss_pred CcCCHHHHHHHHHHHHHhh
Q 001932 975 DAAQVTPAMDLAAEFAAMK 993 (995)
Q Consensus 975 ~~~~l~~al~~a~~~~~~~ 993 (995)
..++++++.+.+.+.+.+.
T Consensus 403 ~~~~l~~f~~~l~~~~~~~ 421 (666)
T 2zxr_A 403 DEALFPAFKARVEAYAARF 421 (666)
T ss_dssp CGGGHHHHHHHHHHHHHTS
T ss_pred CcccHHHHHHHHHHHHHHh
Confidence 6789999999988888654
No 17
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=68.75 E-value=2.6 Score=39.08 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
-|++-++-..++|.++||+||+|+||.|++
T Consensus 72 ~~~~l~~~i~~~l~~~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 72 TNCKIAAALSAACERHLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEe
Confidence 467778888899999999999999999975
No 18
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=64.20 E-value=11 Score=43.25 Aligned_cols=110 Identities=17% Similarity=0.211 Sum_probs=63.9
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccc--------ccccc--cccc-CCC------------CCCCcc
Q 001932 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAG--------MNQYK--PIFL-GTA------------DPNTQL 116 (995)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAG--------m~~fk--~~f~-G~~------------~p~~~~ 116 (995)
-..|.+.+.++|.++|+..|-.-.+++.. +|..+| |..|. +++| .+. ....++
T Consensus 175 ~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~----l~~~sG~~~~f~~emy~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~L 250 (425)
T 2dq3_A 175 ERALINFMLDLHTKKGYKEICPPHLVKPE----ILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLTNLYREEILKEENL 250 (425)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHH----HHHHHSCTTTTGGGSCBCTTTCCEECSSTHHHHHGGGTTEEEETTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHH----HHHhcCCCCcChhhheEecCCeEEEcCCCcHHHHHHHHhhccccccC
Confidence 34677788888999999999776666521 222222 21221 1222 111 000100
Q ss_pred cccccccccccccccCCCCCCCCCCCCCC----Ccccccccccccccccc-----cHHHHHHHHHHHchhccCCC
Q 001932 117 SKLTRACNTQKCIRAGGKHNDLDDVGKDT----YHHTFFEMLGNWSFGDY-----FKNEAIEWAWELLTKVYRLP 182 (995)
Q Consensus 117 ~~~~r~~~~QkCiR~gGkhnDl~~VG~t~----rH~TfFEMlGn~SfgdY-----fK~eai~~awe~lt~~l~l~ 182 (995)
.-|.+-.++|.|- ....-|++. |=|. |.|..-++|+.= .-+|.+.+++++|.. ||||
T Consensus 251 --Plrl~~~g~~FR~-----E~~~~Gr~~~Gl~R~re-F~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~-LGL~ 316 (425)
T 2dq3_A 251 --PIYLTAYTPCYRR-----EAGAYGKDIRGIIRQHQ-FDKVELVKIVHPDTSYDELEKLVKDAEEVLQL-LGLP 316 (425)
T ss_dssp --CEEEEEEEEEECC-----CCSCCSSSCSSSSSCSE-EEEEEEEEEECGGGHHHHHHHHHHHHHHHHHH-HTCC
T ss_pred --CeEEEEecCEecC-----CCCcccccccCcccccc-eEEeeEEEECCHHHHHHHHHHHHHHHHHHHHH-CCCc
Confidence 1478888999994 443333321 3344 456677888731 236789999999964 9998
No 19
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=64.04 E-value=3.9 Score=39.28 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
|++-.+-.-++|.+.|||||+|+||.|++
T Consensus 94 n~~~s~~i~~~l~~~LgI~~~riyI~f~d 122 (133)
T 3fwu_A 94 PEKVTSIVTAAITKECGIVADRIFVLYFS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 66667777899999999999999999975
No 20
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=63.64 E-value=20 Score=39.58 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=27.4
Q ss_pred ccCCCCcCCCCC-hHHHHHHHHHhhhhCCCeeecCCCccc
Q 001932 48 MPGADPQVVEWP-ATKVRDTFFKFFEDKNHVNWKSSPVVP 86 (995)
Q Consensus 48 ~~~~~~~~~~~~-~~eiR~~Fl~fF~~~gH~~v~s~slvp 86 (995)
+|+.....-..+ ...+++..-++|...|...+-++++.+
T Consensus 96 LP~~~~~~G~~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~ 135 (327)
T 3pco_A 96 LPGRRIENGGLHPVTRTIDRIESFFGELGFTVATGPEIED 135 (327)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHHTTTCBCCCCCSEEC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCeEEECCCccC
Confidence 455433333333 678899999999999999988876644
No 21
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=63.46 E-value=3.8 Score=38.02 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
-|++-.+---++|.+.||+||+|+||.|++
T Consensus 71 ~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 100 (114)
T 3djh_A 71 QNRSYSKLLCGLLAERLRISPDRVYINYYD 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 355666677789999999999999999985
No 22
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=62.53 E-value=4 Score=38.18 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
+++-.+--.++|.++||+|++|+||.|++
T Consensus 73 n~~~s~~i~~~l~~~Lgi~~~RiyI~f~d 101 (117)
T 3kan_A 73 NRSHSAHFFEFLTKELALGQDRILIRFFP 101 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 45556666788999999999999999985
No 23
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=60.54 E-value=5.1 Score=36.84 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
-|++-++-..++|.+.||+||+|+||++.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (112)
T 3b64_A 72 EPEKVTSIVTAAITKECGIVADRIFVLYFS 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 477788888999999999999999999975
No 24
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=60.52 E-value=29 Score=40.77 Aligned_cols=52 Identities=10% Similarity=0.093 Sum_probs=35.5
Q ss_pred cccc-cccccccCCCCCCCCCCC--CC-CCcccccccccccccccc-----cHHHHH-HHHHHHchhccCCC
Q 001932 121 RACN-TQKCIRAGGKHNDLDDVG--KD-TYHHTFFEMLGNWSFGDY-----FKNEAI-EWAWELLTKVYRLP 182 (995)
Q Consensus 121 r~~~-~QkCiR~gGkhnDl~~VG--~t-~rH~TfFEMlGn~SfgdY-----fK~eai-~~awe~lt~~l~l~ 182 (995)
|++. .++|.|- . .| +- .|=|- |+|..-++|++- +=++.+ .++++|+.. ||||
T Consensus 346 rl~q~ig~~FR~-----E---pgs~~GL~R~RE-F~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~~-LGLp 407 (522)
T 2cja_A 346 KVFDRSGTSHRY-----E---SGGIHGIERVDE-FHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDI-LDIE 407 (522)
T ss_dssp EEEECSSEEECC-----C---SSSCCCTTSCSE-EEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHT-SCCC
T ss_pred eEEEEcCceEeC-----C---CCCCCCCeEeEE-EEEeeEEEEeChHHHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 6677 8899994 4 44 21 23344 678888999841 224567 888888854 9999
No 25
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=59.59 E-value=4.8 Score=38.64 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
-|++-.+-.-++|.+.|||||+|+||.|++
T Consensus 93 ~n~~~s~~i~~~l~~~LgI~~~rvyI~f~d 122 (133)
T 3fwt_A 93 KPKMMTPRIAAAITKECGIPAERIYVFYYS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 356666777899999999999999999975
No 26
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=57.35 E-value=5.1 Score=38.58 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
|++-.+---++|.+.||+||+|+||.|++
T Consensus 94 n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 122 (135)
T 3t5s_A 94 NPSISAAITGCLTQHFKVKPERVYISFNE 122 (135)
T ss_dssp CHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred CchHHHHHHHHHHHhcccCccEEEEEecc
Confidence 55666667799999999999999999975
No 27
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=55.16 E-value=6.9 Score=36.78 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
-|++-++-..++|.+.||+||+++||++.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (125)
T 2wkb_A 72 NNSLLADKITKILSNHLSVKPRRVYIEFRD 101 (125)
T ss_dssp THHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 478888889999999999999999999976
No 28
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=54.12 E-value=6.8 Score=35.91 Aligned_cols=29 Identities=14% Similarity=0.401 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
|++-++-..++|.+.||+||+|+||++.+
T Consensus 72 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 72 NRDHSAKLFDHLNTKLGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 67778888899999999999999999986
No 29
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=54.10 E-value=6.8 Score=36.08 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
|++-++-..++|.+.||+||+|+||++.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 73 TQEVSELVCGHIEQNLGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 77788888999999999999999999986
No 30
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=52.59 E-value=7.4 Score=36.16 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
|++-++-..++|.+.||+||+|+||++.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (119)
T 2os5_A 73 NIRHTQKITQFCQDTLKLPKDKVIITYFD 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 67778888899999999999999999986
No 31
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=52.56 E-value=7.5 Score=35.81 Aligned_cols=29 Identities=28% Similarity=0.613 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
|++-++-..++|.+.||+||+|+||++.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 73 NKSYTKLLCDILTKQLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 67778888899999999999999999986
No 32
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=52.09 E-value=16 Score=24.64 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 001932 840 KADIRAKIALLQNQVRKAQKKV 861 (995)
Q Consensus 840 ~~~l~~~l~~l~~e~k~l~kel 861 (995)
.++++..++.+++.++++.|++
T Consensus 3 adelykeledlqerlrklrkkl 24 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888888888877765
No 33
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=51.80 E-value=90 Score=33.63 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=64.7
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCcccCC--CCCcccccccccccc-----ccccCCC-------------C-CCCcccc
Q 001932 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVN--DPTLLFANAGMNQYK-----PIFLGTA-------------D-PNTQLSK 118 (995)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~s~slvp~~--d~tllftnAGm~~fk-----~~f~G~~-------------~-p~~~~~~ 118 (995)
...+.+...++|.+.|...|-..++.+.+ +.+..+....|..+. .+.|-.. . ..-|
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~P--- 149 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKP--- 149 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSC---
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCC---
Confidence 46788889999999999999999998632 111111100233222 1222110 0 0111
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCccccccccccccccc---ccHHHHHHHHHHHchhccCCCC
Q 001932 119 LTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD---YFKNEAIEWAWELLTKVYRLPA 183 (995)
Q Consensus 119 ~~r~~~~QkCiR~gGkhnDl~~VG~t~rH~TfFEMlGn~Sfgd---YfK~eai~~awe~lt~~l~l~~ 183 (995)
-|+....+|.|- |-. |. .|.--|.|++-+.||. .-=.|.+..+.+++. .|||+.
T Consensus 150 -lrlfeiG~vFR~-----E~~--~~--~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~-~LGl~~ 206 (288)
T 3dsq_A 150 -IRIFEIGTCYRK-----ESQ--GA--QHLNEFTMLNLTELGTPLEERHQRLEDMARWVLE-AAGIRE 206 (288)
T ss_dssp -EEEEEEEEEECS-----CCS--SS--CCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHH-HHTCCC
T ss_pred -EEEEEEeeEEec-----CCC--CC--CcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHH-HcCCCC
Confidence 377888899994 333 32 2444788999888884 112367777777775 479853
No 34
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=43.69 E-value=12 Score=36.11 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEECCCCcC-----CCCCcHHHHHHHHhhCCC
Q 001932 163 FKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKA-----GLAPDNEARDIWLKFLPA 215 (995)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~-----~~~~D~E~~~iW~~~~~~ 215 (995)
-|++-++-..+.|.+.+|+|++++||++.+-+... -+.+|....+.|.+.+|+
T Consensus 77 qk~~l~~~l~~~l~~~lgi~~~~v~V~i~E~~~~~wg~gG~~~~~~g~e~~W~~~~~~ 134 (148)
T 3n4h_A 77 QKEELLLRLTQEIALILGIPNEEVWVYITEIPGSNMTEYGRLLMEPGEEEKWFNSLPE 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGCCCSSCC----------------
T ss_pred HHHHHHHHHHHHHHHHhCcCcCcEEEEEEEcCHHHeeECCEECCCCcchHHHHHhCcH
Confidence 37778888899999999999999999998632211 233455555566655554
No 35
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=43.32 E-value=13 Score=29.75 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
-|++-++-..+.|.+.||+|++++||.+.+
T Consensus 15 ~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e 44 (62)
T 1otf_A 15 QKETLIRQVSEAMANSLDAPLERVRVLITE 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 466777778889999999999999999875
No 36
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=43.20 E-value=13 Score=29.67 Aligned_cols=30 Identities=10% Similarity=0.023 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
-|++-++-..+.|.+.||+|++++||.+.+
T Consensus 15 qk~~l~~~i~~~l~~~lg~~~~~v~V~i~e 44 (61)
T 2opa_A 15 QKRNLVEKVTEAVKETTGASEEKIVVFIEE 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 366677778888999999999999999975
No 37
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=41.02 E-value=18 Score=29.27 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
|++-++-.-+.|.+.||+|++++||.+.+
T Consensus 17 k~~l~~~lt~~l~~~lg~~~~~v~V~i~e 45 (64)
T 3abf_A 17 KRELVRRLTEMASRLLGEPYEEVRVILYE 45 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 55667777788889999999999999876
No 38
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=39.71 E-value=26 Score=28.53 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
|++-++-.-+.+.+.||+|++.++|.+.+
T Consensus 15 K~~L~~~it~~~~~~lg~~~~~v~V~i~E 43 (62)
T 3m20_A 15 KREFVERLTSVAAEIYGMDRSAITILIHE 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 66677777788889999999999999876
No 39
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=38.25 E-value=29 Score=40.41 Aligned_cols=99 Identities=17% Similarity=0.318 Sum_probs=58.9
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccc------ccccCCCCC---CCc-cccccccccccccccc
Q 001932 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK------PIFLGTADP---NTQ-LSKLTRACNTQKCIRA 131 (995)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk------~~f~G~~~p---~~~-~~~~~r~~~~QkCiR~ 131 (995)
.|-+.+-+||.++|...|..--+.+.. +.+|-..|+ +++|-+++- .-- .+.+.|+-..-+|.|.
T Consensus 183 ~i~~~ir~~~~~~gF~EV~TPil~~~~------~~~ga~~f~~~~~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~ 256 (487)
T 1eov_A 183 GVCELFREYLATKKFTEVHTPKLLGAP------SEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRA 256 (487)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC------SSSSSCCCEEEETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEEEec------CCCCcccceeccCCccEEcccChHHHHHHHHhcCCCceEEEeccEec
Confidence 455566789999999888765555421 222222222 334432210 000 0235677788899996
Q ss_pred CCCCCCCCCCCCCCCcccccccccc-cccc-cccHHHHHHHHHHHch
Q 001932 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFG-DYFKNEAIEWAWELLT 176 (995)
Q Consensus 132 gGkhnDl~~VG~t~rH~TfFEMlGn-~Sfg-dYfK~eai~~awe~lt 176 (995)
|+. .|+||..=|-||+- .||| || +|.++.+-+++.
T Consensus 257 -------E~~-~~~Rh~pEFt~le~e~af~~~~--~dlm~l~E~ll~ 293 (487)
T 1eov_A 257 -------ENS-NTHRHMTEFTGLDMEMAFEEHY--HEVLDTLSELFV 293 (487)
T ss_dssp -------CCC-CCTTCCSEEEEEEEEEECSSCT--HHHHHHHHHHHH
T ss_pred -------CCC-CCCccchhhhhhhhhhhhhcCH--HHHHHHHHHHHH
Confidence 333 36899988999986 7898 57 555555555543
No 40
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=38.15 E-value=38 Score=28.71 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHh
Q 001932 163 FKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 211 (995)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~ 211 (995)
-|++-++-.-+.|.+.||+|++++||.+.+ .++++=+. +|..
T Consensus 16 qk~~L~~~l~~~l~~~lgip~~~v~V~i~e------~~~~~w~~-v~~~ 57 (76)
T 1gyx_A 16 QKAALAADITDVIIRHLNSKDSSISIALQQ------IQPESWQA-IWDA 57 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEE------CCGGGHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCceEEEEEEE------eChHHEEE-EEch
Confidence 366667777888999999999999999986 34455555 6643
No 41
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=34.60 E-value=25 Score=28.97 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
|++-++-..+.+.+.||+|++.+||.+.+
T Consensus 19 K~~l~~~lt~~l~~~lg~p~~~v~V~i~e 47 (67)
T 3m21_A 19 KQQLIEGVSDLMVKVLNKNKASIVVIIDE 47 (67)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCcCcccEEEEEEE
Confidence 66777778888889999999999999875
No 42
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=33.90 E-value=34 Score=38.00 Aligned_cols=103 Identities=16% Similarity=0.251 Sum_probs=61.2
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccc------------cccCCCCC---C-Cccccccccccc
Q 001932 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKP------------IFLGTADP---N-TQLSKLTRACNT 125 (995)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~------------~f~G~~~p---~-~~~~~~~r~~~~ 125 (995)
+|-+.+=+||.++|-..|..=-|.+.. +. .|+..+|+= .||-+++- . -=.+.+.|+-..
T Consensus 41 ~i~~~iR~ff~~~gF~EVeTPiL~~~~-~~----~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~~rvyqI 115 (345)
T 3a5y_A 41 AIMAEIRRFFADRGVLEVETPCMSQAT-VT----DIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQL 115 (345)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC-CC----CTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEecC-CC----CCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCCCcEEEE
Confidence 455566679999999988765555422 11 233444443 22222110 0 001235778888
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHchhccC
Q 001932 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTKVYR 180 (995)
Q Consensus 126 QkCiR~gGkhnDl~~VG~t~rH~TfFEMlG-n~SfgdYfK~eai~~awe~lt~~l~ 180 (995)
-||.|. |+. |.||..=|-||- -.+|.|| ++.++.+=+++..+++
T Consensus 116 g~~FR~-------E~~--~~rH~pEFt~lE~e~af~d~--~d~m~~~E~li~~v~~ 160 (345)
T 3a5y_A 116 CRSFRN-------EEM--GRYHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQQVLD 160 (345)
T ss_dssp EEEECC-------CCC--BTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHHC
T ss_pred EcceeC-------CCC--cccccchhheeeeeeeCCCH--HHHHHHHHHHHHHHHc
Confidence 999997 334 789999898884 5577776 4566666566555544
No 43
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=33.38 E-value=4.8 Score=35.44 Aligned_cols=35 Identities=6% Similarity=-0.093 Sum_probs=27.7
Q ss_pred ceEEEEeeCCeeeccceeecccceEEEEeEEEeCC
Q 001932 574 SSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGG 608 (995)
Q Consensus 574 ~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g 608 (995)
+.+..+..+|++.|+.+.+.+++.+++++..+.+|
T Consensus 44 ~~~vaakvNg~l~dL~~~l~~d~~ve~vt~~~~eg 78 (88)
T 1wwt_A 44 DNTVIAKVNNVVWDLDRPLEEDCTLELLKFEDEEA 78 (88)
T ss_dssp GGCCCEEESSSEECSSSCCCSSEEEEECSSCCSCC
T ss_pred cceEEEEECCEEECCCcCcCCCCEEEEEeCCCHHH
Confidence 44455677999999999998888899888776654
No 44
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=33.18 E-value=7.9 Score=30.71 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=10.0
Q ss_pred HHHHHHhhccCCCCC
Q 001932 948 EWLTAALQPLKGRCG 962 (995)
Q Consensus 948 ~l~k~v~~~lgGkGG 962 (995)
++..+.++.+.|+||
T Consensus 17 klaeeaakllegggg 31 (62)
T 2i7u_A 17 KLAEEAAKLLEGGGG 31 (62)
T ss_dssp HHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhcCCC
Confidence 455667777776666
No 45
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=32.87 E-value=1.1e+02 Score=27.60 Aligned_cols=48 Identities=21% Similarity=0.195 Sum_probs=39.7
Q ss_pred cCCCCChHHHHHhhccCCCChHHHHHHHHHcCc----eeChhhHHHHHHHHH
Q 001932 453 QGKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEAR 500 (995)
Q Consensus 453 ~~~~l~g~~~f~Lydt~G~p~dl~~~~a~e~g~----~vd~~~f~~~~~~~~ 500 (995)
..+.|+++++-.++-+.|+|.+.+.+|-++... .+|.++|..+|..-.
T Consensus 27 ~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~~ 78 (106)
T 1eh2_A 27 VNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVY 78 (106)
T ss_dssp SSSCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHHH
T ss_pred CCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHH
Confidence 368999999999999999999988888876543 388889999987543
No 46
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=31.91 E-value=24 Score=32.96 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
|++-++-..+.|.+.||+|++++||++.+
T Consensus 75 K~~l~~~l~~~l~~~lg~~~~~v~V~i~e 103 (128)
T 1mww_A 75 KKRLIKMLFSELEYKLGIRAHDVEITIKE 103 (128)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 66778888889999999999999999976
No 47
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=29.95 E-value=97 Score=26.96 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=38.1
Q ss_pred CCCCChHHHHHhhccCCCChHHHHHHHHHcCc----eeChhhHHHHHHHHH
Q 001932 454 GKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEAR 500 (995)
Q Consensus 454 ~~~l~g~~~f~Lydt~G~p~dl~~~~a~e~g~----~vd~~~f~~~~~~~~ 500 (995)
.+.|+.+++-.++.+.|+|.+-+.+|.++... .||.++|..+|....
T Consensus 24 dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~ 74 (95)
T 1c07_A 24 DGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLIS 74 (95)
T ss_dssp SSEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHHHHHH
T ss_pred CCcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHH
Confidence 67899999999999999998888888776433 378889999886543
No 48
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=28.88 E-value=29 Score=32.57 Aligned_cols=29 Identities=10% Similarity=0.003 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
|++-++-.-+.|.+.||+|++++||++.+
T Consensus 81 K~~l~~~l~~~l~~~lg~~~~~v~I~i~e 109 (131)
T 2aal_A 81 KVCFYKLLTGALERDCGISPDDVIVALVE 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 77888888999999999999999999976
No 49
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=28.42 E-value=86 Score=27.78 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=38.3
Q ss_pred CCCCChHHHHHhhccCCCChHHHHHHHHHcCc----eeChhhHHHHHHHH
Q 001932 454 GKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEA 499 (995)
Q Consensus 454 ~~~l~g~~~f~Lydt~G~p~dl~~~~a~e~g~----~vd~~~f~~~~~~~ 499 (995)
.+.|+.+++-.+..+.|+|-+.+.+|.++... .||.++|..+|...
T Consensus 25 dG~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~ 74 (99)
T 1qjt_A 25 TGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLV 74 (99)
T ss_dssp SSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999888888877543 38888999988654
No 50
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=28.06 E-value=34 Score=28.63 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
|++-++-..+.+.+.||+|++.+||.+.+
T Consensus 17 K~~L~~~it~~l~~~lg~p~~~v~V~i~e 45 (72)
T 3mb2_A 17 KAELARALSAAAAAAFDVPLAEVRLIIQE 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 66777778888889999999999999865
No 51
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=27.85 E-value=90 Score=29.41 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=39.0
Q ss_pred CCCCChHHHHHhhccCCCChHHHHHHHHHcCc----eeChhhHHHHHHHHH
Q 001932 454 GKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEAR 500 (995)
Q Consensus 454 ~~~l~g~~~f~Lydt~G~p~dl~~~~a~e~g~----~vd~~~f~~~~~~~~ 500 (995)
.+.|+|+++-.++-..|+|.+....|-+.-.. .+|.++|..+|.--.
T Consensus 46 dG~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li~ 96 (121)
T 3fia_A 46 SGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIK 96 (121)
T ss_dssp TTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHH
T ss_pred CCeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 78999999999999999999998888776543 478889999887543
No 52
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=27.33 E-value=35 Score=27.04 Aligned_cols=29 Identities=3% Similarity=-0.107 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
|++-++-..+.|.+.||+|++++||.+.+
T Consensus 19 k~~l~~~l~~~l~~~lg~p~~~v~v~i~e 47 (63)
T 2x4k_A 19 LKNLVSEVTDAVEKTTGANRQAIHVVIEE 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55667777788889999999999999875
No 53
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=24.64 E-value=26 Score=38.91 Aligned_cols=28 Identities=18% Similarity=0.238 Sum_probs=23.2
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 001932 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (995)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtDlf 315 (995)
+|=--|+|+|||++++-|.+|.=|+=+|
T Consensus 313 PhgG~glGiDRLvmll~g~~~IRdVi~F 340 (345)
T 3a5y_A 313 DCSGVALGVDRLVMLALGAETLAEVIAF 340 (345)
T ss_dssp SEEEEEEEHHHHHHHHHTCSSGGGGSSS
T ss_pred CCcEEEEcHHHHHHHHcCCCcHheEecC
Confidence 4556699999999999999998776444
No 54
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=23.74 E-value=99 Score=28.04 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=38.1
Q ss_pred CCCCChHHHHHhhccCCCChHHHHHHHHHcCc----eeChhhHHHHHHHH
Q 001932 454 GKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEA 499 (995)
Q Consensus 454 ~~~l~g~~~f~Lydt~G~p~dl~~~~a~e~g~----~vd~~~f~~~~~~~ 499 (995)
.+.|+.+++-.++-+.|++-+.+.+|.++... .||.++|..+|...
T Consensus 36 dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~I~~~EF~~~m~~~ 85 (110)
T 1iq3_A 36 SSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLI 85 (110)
T ss_dssp SSEEEHHHHHHHCCSSSCSSCCHHHHHHHHCSSSCSEEEHHHHHHHHHHH
T ss_pred CCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence 57899999999999999998888888776543 48888999988754
No 55
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=22.33 E-value=32 Score=39.46 Aligned_cols=101 Identities=16% Similarity=0.300 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCC-CC--Cccccccccccc-cccccCCCCCCCc----ccccccccccccccccC
Q 001932 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVN-DP--TLLFANAGMNQY-KPIFLGTADPNTQ----LSKLTRACNTQKCIRAG 132 (995)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~-d~--tllftnAGm~~f-k~~f~G~~~p~~~----~~~~~r~~~~QkCiR~g 132 (995)
+.|-+.+-+||.++|...|..--+.+.. ++ .++-|+. | ++++|-++ |.-. .+.+.|+-..-+|.|.
T Consensus 138 s~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~~----~~~~~~L~~S-pql~~~~~~~g~~rvf~ig~~FR~- 211 (429)
T 1wyd_A 138 SLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIY----FGKEAFLAQS-PQLYKELMAGVVERVFEVAPAWRA- 211 (429)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEE----TTEEEEECSC-CHHHHHHHHHHHSEEEEEEEEECC-
T ss_pred HHHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEec----CCceEEecCC-cHHHHHHHHhCcCceEEEcccccc-
Confidence 3566678899999999888665554421 11 1111211 1 23444222 2100 0123577788899996
Q ss_pred CCCCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHch
Q 001932 133 GKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLT 176 (995)
Q Consensus 133 GkhnDl~~VG~t~rH~TfFEMlG-n~SfgdYfK~eai~~awe~lt 176 (995)
+ +. .++||..=|-|+. -.+|.|| .|.+..+.+++.
T Consensus 212 ----E--~~-~~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~ 247 (429)
T 1wyd_A 212 ----E--ES-DTPFHLAEFISMDVEMAFADY--NDVMQLLEKILH 247 (429)
T ss_dssp ----C--CC-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHH
T ss_pred ----c--CC-ccccccceeeEeeeeecCCCH--HHHHHHHHHHHH
Confidence 2 22 2569998888875 4555675 455555555544
No 56
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=22.29 E-value=49 Score=26.96 Aligned_cols=30 Identities=7% Similarity=-0.181 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 001932 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (995)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rL~vT~~~ 192 (995)
-|++-++-.-+.+.+.||+|++.+||.+.+
T Consensus 15 qk~~L~~~it~~~~~~lg~p~~~v~V~i~e 44 (65)
T 3ry0_A 15 EVAALGEALTAAAHETLGTPVEAVRVIVEE 44 (65)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 367777778888889999999999999865
No 57
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=22.09 E-value=59 Score=29.79 Aligned_cols=31 Identities=3% Similarity=0.161 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHHhhcc
Q 001932 438 LLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (995)
Q Consensus 438 l~~g~~~~~~~~~~~~~~~l~g~~~f~Lydt 468 (995)
.+.++..|+++++++.++.+|-++++++|.-
T Consensus 32 FEeal~eLEeIV~~LE~gel~LEesl~lyee 62 (100)
T 1vp7_A 32 FETALAELESLVSAMENGTLPLEQSLSAYRR 62 (100)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456677888888888899999999999853
No 58
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=21.86 E-value=32 Score=39.55 Aligned_cols=102 Identities=15% Similarity=0.205 Sum_probs=56.5
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc----cccccCCCCC---CCcc-cccccccccccccccCC
Q 001932 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY----KPIFLGTADP---NTQL-SKLTRACNTQKCIRAGG 133 (995)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~f----k~~f~G~~~p---~~~~-~~~~r~~~~QkCiR~gG 133 (995)
+|-+.+=+||.++|...|..--+.+. ++.- .|-+.+| ++++|-+++- .--+ +.+.|+-..-+|+|..
T Consensus 142 ~i~~~iR~f~~~~gF~EVeTPiL~~~-~~eg---~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E- 216 (438)
T 3nem_A 142 SVFKAVRDFFHENGFIEIHTPKIIAT-ATEG---GTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAE- 216 (438)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESS-CSSC---SSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCC-
T ss_pred HHHHHHHHHHHHCCcEEEeCCEEecC-CCCC---CccceeEeeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECC-
Confidence 45566778999999888865444432 1110 0111111 2344433221 0001 2467888889999973
Q ss_pred CCCCCCCCCCCCCccccccccc-cccccc-c-----cHHHHHHHHHHHc
Q 001932 134 KHNDLDDVGKDTYHHTFFEMLG-NWSFGD-Y-----FKNEAIEWAWELL 175 (995)
Q Consensus 134 khnDl~~VG~t~rH~TfFEMlG-n~Sfgd-Y-----fK~eai~~awe~l 175 (995)
+.. |.||..=|-||- -.+|.| | .-++-|.+.+.-+
T Consensus 217 ------~~~-t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v 258 (438)
T 3nem_A 217 ------EHN-TTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYV 258 (438)
T ss_dssp ------SSC-CTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCC-CcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHH
Confidence 222 679987777874 557777 6 2345566666544
No 59
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=21.44 E-value=33 Score=40.30 Aligned_cols=100 Identities=11% Similarity=0.206 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccc--------ccccCCCCCCC----ccccccccccccccc
Q 001932 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK--------PIFLGTADPNT----QLSKLTRACNTQKCI 129 (995)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk--------~~f~G~~~p~~----~~~~~~r~~~~QkCi 129 (995)
+|-+.+=+||.++|-..|..--|.|.. ..|+--+|. +++|-+++--+ -.+.+.|+-..-+|+
T Consensus 181 ~i~~~iR~f~~~~gF~EVeTPiL~~~~------gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~F 254 (521)
T 3bju_A 181 KIITYIRSFLDELGFLEIETPMMNIIP------GGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQF 254 (521)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC------CSSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEeCceeeccC------CCccccceeeecccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcce
Confidence 344556689999999888665554421 122222332 34444332100 012367788889999
Q ss_pred ccCCCCCCCCCCCCCCCccccccccc-cccccccc-----HHHHHHHHHHHch
Q 001932 130 RAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYF-----KNEAIEWAWELLT 176 (995)
Q Consensus 130 R~gGkhnDl~~VG~t~rH~TfFEMlG-n~SfgdYf-----K~eai~~awe~lt 176 (995)
|. |+++ .||..=|-||- -++|.||- -++-|.++|.-+.
T Consensus 255 R~-------E~~~--trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~ 298 (521)
T 3bju_A 255 RN-------EGID--LTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHIT 298 (521)
T ss_dssp CC-------SCCB--TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eC-------CCCC--CccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 96 3343 49998888884 67888873 4555666666554
No 60
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=21.33 E-value=34 Score=39.15 Aligned_cols=102 Identities=15% Similarity=0.258 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCC-CC--Cccccccccccc-cccccCCCCCCCc----ccccccccccccccccC
Q 001932 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVN-DP--TLLFANAGMNQY-KPIFLGTADPNTQ----LSKLTRACNTQKCIRAG 132 (995)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~-d~--tllftnAGm~~f-k~~f~G~~~p~~~----~~~~~r~~~~QkCiR~g 132 (995)
++|.+.+-+||.++|...|..--+.+.. .+ +++-|+. | ++++|-++ |.-. .+.+.|+-..-+|.|.
T Consensus 129 s~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~~~----~g~~~~L~~S-pel~~~~l~~g~~rvf~ig~~FR~- 202 (422)
T 1n9w_A 129 AALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDY----FEKRAYLAQS-PQLYKQIMVGVFERVYEVAPVWRM- 202 (422)
T ss_dssp HHHHHHHHHHHHHTTCEECCCC---------------------------------CHHHHHHHHHHHSEEEEEEEC----
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEEee----CCCcEEeeeC-HHHHHHHHhhCCCceeEEeCceEC-
Confidence 4566778899999999988754443321 11 1222211 1 22344211 1000 0124678888999996
Q ss_pred CCCCCCCCCCCCCCccccccccc-ccccc-cccHHHHHHHHHHHchh
Q 001932 133 GKHNDLDDVGKDTYHHTFFEMLG-NWSFG-DYFKNEAIEWAWELLTK 177 (995)
Q Consensus 133 GkhnDl~~VG~t~rH~TfFEMlG-n~Sfg-dYfK~eai~~awe~lt~ 177 (995)
+ +. .++||..=|-|++ -.+|. || +|.++.+.+++..
T Consensus 203 ----E--~~-~~~RH~pEFtqle~e~~~~~d~--~dlm~l~e~ll~~ 240 (422)
T 1n9w_A 203 ----E--EH-HTSRHLNEYLSLDVEMGFIADE--EDLMRLEEALLAE 240 (422)
T ss_dssp -----------------CCEEEEEEEESCSSH--HHHHHHHHHHHHH
T ss_pred ----C--CC-CCCcccceeEEeeeeeeCCCCH--HHHHHHHHHHHHH
Confidence 2 22 2569998888885 45555 65 6666666666543
No 61
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=21.03 E-value=1.2e+02 Score=26.14 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=36.9
Q ss_pred CCCCChHHHHHhhccCCCChHHHHHHHHHcCc----eeChhhHHHHHHHH
Q 001932 454 GKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEA 499 (995)
Q Consensus 454 ~~~l~g~~~f~Lydt~G~p~dl~~~~a~e~g~----~vd~~~f~~~~~~~ 499 (995)
.+.|+.+++-.++.+.|+|.+-+.+|.++... .||.++|..+|...
T Consensus 23 dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~ 72 (92)
T 1fi6_A 23 NGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLV 72 (92)
T ss_dssp TCEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Confidence 57899999999998899998888888776433 47888999988654
No 62
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=20.93 E-value=34 Score=23.74 Aligned_cols=10 Identities=60% Similarity=1.427 Sum_probs=7.1
Q ss_pred CCCCCCcCce
Q 001932 231 GDTGPCGPCS 240 (995)
Q Consensus 231 G~~GpcGPcs 240 (995)
|++||=|||-
T Consensus 19 gppgppgpcc 28 (31)
T 4gyx_A 19 GPPGPPGPCC 28 (31)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCCCCc
Confidence 5677888883
No 63
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=20.84 E-value=34 Score=39.50 Aligned_cols=101 Identities=15% Similarity=0.288 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccC---CCCCccccccccccc-cccccCCCCC---CCcccccccccccccccccCCC
Q 001932 62 KVRDTFFKFFEDKNHVNWKSSPVVPV---NDPTLLFANAGMNQY-KPIFLGTADP---NTQLSKLTRACNTQKCIRAGGK 134 (995)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~---~d~tllftnAGm~~f-k~~f~G~~~p---~~~~~~~~r~~~~QkCiR~gGk 134 (995)
+|-+.+=+||.++|...|..=-+.+. .--+ +|. .+-| ++++|-+++- .--++.+.|+-..-+|+|..
T Consensus 161 ~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~-~f~---~~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E-- 234 (456)
T 3m4p_A 161 EIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGST-LFK---LQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAE-- 234 (456)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEC------CC-CCE---EEETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCC--
T ss_pred HHHHHHHHHHHhCCCEEEeCCeeecCCCCCccc-ccc---ccccCCCcccccCHHHHHHHHHhccCcEEEEEhheecC--
Confidence 34455668999999888865333321 1111 121 1122 2344443321 00112357788888999962
Q ss_pred CCCCCCCCCCCCccccccccc-cccccccc-----HHHHHHHHHHH
Q 001932 135 HNDLDDVGKDTYHHTFFEMLG-NWSFGDYF-----KNEAIEWAWEL 174 (995)
Q Consensus 135 hnDl~~VG~t~rH~TfFEMlG-n~SfgdYf-----K~eai~~awe~ 174 (995)
+. .|.||..=|-||- -.+|.||- -++-|.+++.-
T Consensus 235 -----~~-~t~rH~pEFtmlE~e~af~d~~d~m~~~E~li~~~~~~ 274 (456)
T 3m4p_A 235 -----QS-RTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDN 274 (456)
T ss_dssp -----SC-CCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred -----CC-CCCcchHHHHHhHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 22 3689987788874 45777762 23445555543
No 64
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=20.82 E-value=1.8e+02 Score=20.46 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001932 847 IALLQNQVRKAQKKVAEENLQKAV 870 (995)
Q Consensus 847 l~~l~~e~k~l~kel~~l~~~~a~ 870 (995)
+..+++++..++|++..++.+++.
T Consensus 4 iaalkqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777666553
No 65
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=20.40 E-value=36 Score=39.86 Aligned_cols=103 Identities=16% Similarity=0.277 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCC-C-Cccccccccccc-cccccCCCCCCC----cccccccccccccccccCCC
Q 001932 62 KVRDTFFKFFEDKNHVNWKSSPVVPVND-P-TLLFANAGMNQY-KPIFLGTADPNT----QLSKLTRACNTQKCIRAGGK 134 (995)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~d-~-tllftnAGm~~f-k~~f~G~~~p~~----~~~~~~r~~~~QkCiR~gGk 134 (995)
.|-+.+=+||.++|...|..=-|.+..- . .=.|+.- .+.| ++++|-+++--+ -.+.+.|+-..-+|+|.
T Consensus 188 ~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~-~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~--- 263 (504)
T 1e1o_A 188 KILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH-HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRN--- 263 (504)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEE-ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECC---
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEec-cCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccC---
Confidence 4455666899999988886544443210 0 0012110 0111 223443321100 00235677788999996
Q ss_pred CCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHch
Q 001932 135 HNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLT 176 (995)
Q Consensus 135 hnDl~~VG~t~rH~TfFEMlG-n~SfgdYfK~eai~~awe~lt 176 (995)
|+.+ .||..=|-||. -.+|.|| ++.++.+-+++.
T Consensus 264 ----E~~~--~rH~pEFt~lE~e~af~d~--~dlm~l~E~li~ 298 (504)
T 1e1o_A 264 ----EGIS--VRHNPEFTMMELYMAYADY--HDLIELTESLFR 298 (504)
T ss_dssp ----CCCC--C-CCSEEEEEEEEEESCCH--HHHHHHHHHHHH
T ss_pred ----CCCC--ccccCceeeeeeeecCCCH--HHHHHHHHHHHH
Confidence 3343 59999999986 5677787 344444444443
No 66
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=20.37 E-value=35 Score=40.30 Aligned_cols=100 Identities=14% Similarity=0.255 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccc------ccccCCCCCCC----ccccccccccccccccc
Q 001932 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK------PIFLGTADPNT----QLSKLTRACNTQKCIRA 131 (995)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk------~~f~G~~~p~~----~~~~~~r~~~~QkCiR~ 131 (995)
+|-+.+=+||.++|...|..--|++. ++ .+|-.+|+ +++|-+++--+ -.+.+.|+-..-+|+|.
T Consensus 249 ~i~~~iR~ff~~~gF~EVeTPiL~~~-~~-----egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~ 322 (548)
T 3i7f_A 249 ACCGLFREFLTSQKFVEIHTPKLIGC-SS-----EGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRA 322 (548)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSBC-------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCC
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEecc-cC-----CCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEec
Confidence 45555678999999988876555542 11 23344443 34443332100 01236777778999997
Q ss_pred CCCCCCCCCCCCCCCccccccccccc-ccc-ccc-----HHHHHHHHHHHc
Q 001932 132 GGKHNDLDDVGKDTYHHTFFEMLGNW-SFG-DYF-----KNEAIEWAWELL 175 (995)
Q Consensus 132 gGkhnDl~~VG~t~rH~TfFEMlGn~-Sfg-dYf-----K~eai~~awe~l 175 (995)
. +. .|.||.+=|-||--. +|+ ||. -++-|.+.+.-+
T Consensus 323 E-------~~-~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~ 365 (548)
T 3i7f_A 323 E-------NS-NTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEI 365 (548)
T ss_dssp S-------CC-CSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHH
T ss_pred C-------CC-CCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 3 22 378999889999764 887 563 344455544433
No 67
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=20.32 E-value=36 Score=39.72 Aligned_cols=105 Identities=12% Similarity=0.258 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCcccCCCC--Cccccccccccc-cccccCCCCCCC----cccccccccccccccccCC
Q 001932 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDP--TLLFANAGMNQY-KPIFLGTADPNT----QLSKLTRACNTQKCIRAGG 133 (995)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~--tllftnAGm~~f-k~~f~G~~~p~~----~~~~~~r~~~~QkCiR~gG 133 (995)
+.|-+.+-+||.++|...|..--+.+..-- .-.|+.- .+.| ++++|-+++--+ -.+.+.|+-..-+|.|.
T Consensus 178 s~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~-~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~-- 254 (493)
T 3a74_A 178 SLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITH-HNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRN-- 254 (493)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEE-ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECC--
T ss_pred HHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEec-ccCCCceeEEecCHHHHHHHHhhcccCceEEECccccC--
Confidence 355566778999999988866444442110 0112110 0011 123443321100 00235677888999996
Q ss_pred CCCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHchh
Q 001932 134 KHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTK 177 (995)
Q Consensus 134 khnDl~~VG~t~rH~TfFEMlG-n~SfgdYfK~eai~~awe~lt~ 177 (995)
|+.+ .||..=|-||. -.+|.|| ++.++.+-+++..
T Consensus 255 -----E~~~--~rH~pEFT~lE~e~af~d~--~dlm~l~E~ll~~ 290 (493)
T 3a74_A 255 -----EGIS--TRHNPEFTMLELYEAYADF--RDIMKLTENLIAH 290 (493)
T ss_dssp -----CCCB--TTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred -----CCCC--cccCCceeEEEEEecCCCH--HHHHHHHHHHHHH
Confidence 3333 59999999986 6777786 4455555555443
No 68
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=20.22 E-value=36 Score=40.07 Aligned_cols=100 Identities=20% Similarity=0.291 Sum_probs=59.0
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccc--------cccccCCCCCCC----ccccccccccccccc
Q 001932 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY--------KPIFLGTADPNT----QLSKLTRACNTQKCI 129 (995)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~f--------k~~f~G~~~p~~----~~~~~~r~~~~QkCi 129 (995)
.|-+.+=+||.++|-..|..=-|.+. | -.|..-+| ++.||-+++--+ -.+.+.|+-..-+|+
T Consensus 209 ~i~~~iR~ff~~~gFlEVeTPiL~~~--~----gGA~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~F 282 (529)
T 4ex5_A 209 KAIASIRKFMGDADFMEVETPMLHPI--P----GGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNF 282 (529)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESS--C----CSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeecc--C----CCCcccccccccccCCcceecccCHHHHHHHHHhcCCCcEEEeehhe
Confidence 45556668999999988865444432 1 12222333 233443322100 012467888889999
Q ss_pred ccCCCCCCCCCCCCCCCccccccccc-cccccccc-----HHHHHHHHHHHch
Q 001932 130 RAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYF-----KNEAIEWAWELLT 176 (995)
Q Consensus 130 R~gGkhnDl~~VG~t~rH~TfFEMlG-n~SfgdYf-----K~eai~~awe~lt 176 (995)
|. |+++ .||..=|-||- -.+|.||- -++-|.++|.-+.
T Consensus 283 R~-------E~~~--~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~ 326 (529)
T 4ex5_A 283 RN-------EGVS--PRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDAL 326 (529)
T ss_dssp CC-------SCCB--TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ec-------CCCC--CCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 96 3333 69999898883 56788873 3555666666544
No 69
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=20.01 E-value=37 Score=38.93 Aligned_cols=102 Identities=15% Similarity=0.125 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhhCCCeeecCCCcccCC-CC--Cccccccccccc-cccccCCCCC---CCcccccccccccccccccCCC
Q 001932 62 KVRDTFFKFFEDKNHVNWKSSPVVPVN-DP--TLLFANAGMNQY-KPIFLGTADP---NTQLSKLTRACNTQKCIRAGGK 134 (995)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~s~slvp~~-d~--tllftnAGm~~f-k~~f~G~~~p---~~~~~~~~r~~~~QkCiR~gGk 134 (995)
.|-+.+-+||.++|...|..--+.+.. .+ .++=|+. | ++++|-+++- ..-.+.+.|+-..-+|.|.
T Consensus 140 ~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~~~----~~~~~~Lr~Spel~~~~~~~g~~rvf~ig~~FR~--- 212 (434)
T 1x54_A 140 TLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKY----FDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRA--- 212 (434)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEEEE----TTEEEEECSCSHHHHHHHHHHHSEEEEEEEEECC---
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEEee----cCCcEEeccChHHHHHHHhcCccceEEEecceec---
Confidence 455677889999999988765554421 22 1111111 1 1233432210 0000124688888999996
Q ss_pred CCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHchh
Q 001932 135 HNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTK 177 (995)
Q Consensus 135 hnDl~~VG~t~rH~TfFEMlG-n~SfgdYfK~eai~~awe~lt~ 177 (995)
+ +. .++||..=|-|++ -.+|.|| .|.+..+.+++..
T Consensus 213 --E--~~-~~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~~ 249 (434)
T 1x54_A 213 --E--KS-RTRRHLTEFWHLELEAAWMDL--WDIMKVEEELVSY 249 (434)
T ss_dssp --C--CC-CCSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred --C--CC-CCcccccEEEEeeEEEcCCCH--HHHHHHHHHHHHH
Confidence 3 22 2569998888875 4555575 5666666666543
Done!