Query 001935
Match_columns 994
No_of_seqs 363 out of 2272
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 12:45:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2109 WD40 repeat protein [G 100.0 1.3E-60 2.8E-65 543.9 20.6 629 12-765 1-650 (788)
2 PF12490 BCAS3: Breast carcino 100.0 3.1E-53 6.6E-58 456.1 15.8 239 505-750 1-251 (251)
3 KOG2110 Uncharacterized conser 100.0 7.1E-47 1.5E-51 410.8 32.6 325 53-596 2-341 (391)
4 KOG2111 Uncharacterized conser 100.0 6.1E-36 1.3E-40 321.0 32.6 316 57-594 6-331 (346)
5 KOG0263 Transcription initiati 99.9 1.9E-22 4.1E-27 236.4 22.0 230 73-464 388-652 (707)
6 KOG0271 Notchless-like WD40 re 99.9 3.8E-22 8.3E-27 218.5 22.8 308 51-473 110-451 (480)
7 KOG0315 G-protein beta subunit 99.9 3.4E-21 7.4E-26 202.3 23.9 266 77-472 13-299 (311)
8 KOG0271 Notchless-like WD40 re 99.9 7.6E-21 1.7E-25 208.4 21.7 291 72-459 166-479 (480)
9 KOG0272 U4/U6 small nuclear ri 99.9 5.2E-21 1.1E-25 212.0 20.3 256 53-476 172-433 (459)
10 cd00200 WD40 WD40 domain, foun 99.9 7.3E-19 1.6E-23 179.1 34.0 276 52-459 5-289 (289)
11 KOG0272 U4/U6 small nuclear ri 99.8 1.4E-20 3E-25 208.6 16.9 240 52-459 213-458 (459)
12 KOG0273 Beta-transducin family 99.8 1E-18 2.3E-23 195.8 27.6 280 57-461 236-523 (524)
13 KOG0319 WD40-repeat-containing 99.8 5.3E-19 1.1E-23 206.1 20.9 326 74-474 116-548 (775)
14 KOG0318 WD40 repeat stress pro 99.8 1.9E-17 4E-22 187.7 30.7 340 52-491 186-583 (603)
15 KOG0291 WD40-repeat-containing 99.8 1.7E-17 3.6E-22 193.8 28.7 267 74-466 276-555 (893)
16 KOG0279 G protein beta subunit 99.8 2.2E-17 4.7E-22 176.2 26.7 246 52-466 11-267 (315)
17 KOG0295 WD40 repeat-containing 99.8 5.7E-18 1.2E-22 185.4 21.6 254 52-459 146-404 (406)
18 KOG0286 G-protein beta subunit 99.8 6.3E-17 1.4E-21 173.5 28.0 255 52-473 51-315 (343)
19 PLN00181 protein SPA1-RELATED; 99.8 1.1E-16 2.5E-21 197.8 33.2 227 75-460 545-792 (793)
20 KOG0295 WD40 repeat-containing 99.8 9.2E-18 2E-22 183.8 18.9 251 53-473 105-376 (406)
21 KOG0292 Vesicle coat complex C 99.8 2E-17 4.3E-22 195.1 22.2 301 52-462 5-322 (1202)
22 KOG0265 U5 snRNP-specific prot 99.8 5.9E-17 1.3E-21 174.2 23.1 258 52-473 43-308 (338)
23 KOG0315 G-protein beta subunit 99.8 9.6E-17 2.1E-21 169.1 23.0 228 171-473 18-258 (311)
24 KOG0266 WD40 repeat-containing 99.8 6E-16 1.3E-20 180.5 31.2 238 73-472 169-420 (456)
25 KOG0291 WD40-repeat-containing 99.7 6.9E-16 1.5E-20 180.4 30.2 325 53-467 142-514 (893)
26 KOG0273 Beta-transducin family 99.7 7.7E-17 1.7E-21 181.0 21.2 215 172-465 256-486 (524)
27 KOG0266 WD40 repeat-containing 99.7 2E-16 4.3E-21 184.5 24.6 189 172-473 180-376 (456)
28 PLN00181 protein SPA1-RELATED; 99.7 2E-15 4.3E-20 186.9 34.4 247 53-462 480-739 (793)
29 KOG0279 G protein beta subunit 99.7 7.9E-16 1.7E-20 164.4 25.7 227 73-462 73-314 (315)
30 KOG0281 Beta-TrCP (transducin 99.7 2.7E-17 5.9E-22 178.8 11.8 229 55-463 196-430 (499)
31 cd00200 WD40 WD40 domain, foun 99.7 4.2E-15 9.1E-20 151.5 26.1 243 99-465 3-253 (289)
32 KOG0285 Pleiotropic regulator 99.7 7.3E-16 1.6E-20 168.6 21.3 238 53-462 148-390 (460)
33 KOG0263 Transcription initiati 99.7 1E-15 2.2E-20 180.5 23.4 243 54-449 449-703 (707)
34 KOG0284 Polyadenylation factor 99.7 1.1E-16 2.5E-21 177.2 13.3 246 74-465 107-384 (464)
35 KOG0319 WD40-repeat-containing 99.7 2.3E-15 5E-20 176.0 23.3 114 342-475 478-591 (775)
36 KOG0278 Serine/threonine kinas 99.7 5.7E-16 1.2E-20 163.3 16.0 199 52-401 96-298 (334)
37 KOG0286 G-protein beta subunit 99.7 1.2E-14 2.7E-19 156.1 25.8 225 72-459 106-343 (343)
38 KOG0274 Cdc4 and related F-box 99.7 5.1E-15 1.1E-19 175.5 25.2 241 50-466 243-487 (537)
39 KOG0306 WD40-repeat-containing 99.7 1.6E-15 3.5E-20 177.3 20.0 226 74-462 423-665 (888)
40 KOG0310 Conserved WD40 repeat- 99.7 6.7E-15 1.5E-19 166.3 24.1 235 53-459 65-307 (487)
41 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1.4E-13 2.9E-18 146.2 32.2 263 77-465 3-283 (300)
42 KOG0282 mRNA splicing factor [ 99.7 4.1E-16 8.9E-21 175.7 13.1 261 51-475 209-476 (503)
43 PTZ00421 coronin; Provisional 99.7 6.6E-14 1.4E-18 165.0 31.5 221 84-463 51-292 (493)
44 KOG0276 Vesicle coat complex C 99.7 6.7E-15 1.5E-19 169.4 22.2 223 74-457 66-295 (794)
45 KOG0288 WD40 repeat protein Ti 99.7 2.6E-15 5.6E-20 166.8 18.0 235 57-459 220-459 (459)
46 KOG0643 Translation initiation 99.7 3.9E-14 8.4E-19 150.8 26.0 258 53-462 7-318 (327)
47 KOG1407 WD40 repeat protein [F 99.6 1.2E-14 2.6E-19 154.3 21.2 242 52-462 16-262 (313)
48 KOG0274 Cdc4 and related F-box 99.6 8.5E-15 1.8E-19 173.6 22.3 228 77-471 220-451 (537)
49 KOG0268 Sof1-like rRNA process 99.6 2.3E-15 5E-20 165.1 15.5 275 52-463 62-347 (433)
50 KOG0285 Pleiotropic regulator 99.6 7.6E-15 1.6E-19 160.7 17.9 216 95-473 141-360 (460)
51 PTZ00421 coronin; Provisional 99.6 2.7E-13 5.8E-18 159.9 31.1 250 52-463 71-333 (493)
52 KOG0310 Conserved WD40 repeat- 99.6 1.5E-14 3.2E-19 163.6 19.3 245 52-465 22-272 (487)
53 KOG0645 WD40 repeat protein [G 99.6 2.7E-13 5.9E-18 144.7 27.7 260 52-461 10-311 (312)
54 PTZ00420 coronin; Provisional 99.6 3.5E-13 7.6E-18 160.6 31.1 218 86-462 56-294 (568)
55 KOG0276 Vesicle coat complex C 99.6 4.6E-14 1E-18 162.7 21.9 247 54-469 11-265 (794)
56 KOG0305 Anaphase promoting com 99.6 8.6E-14 1.9E-18 161.4 24.0 240 56-463 217-463 (484)
57 KOG1446 Histone H3 (Lys4) meth 99.6 8.1E-13 1.7E-17 143.6 29.7 245 53-464 11-265 (311)
58 KOG0281 Beta-TrCP (transducin 99.6 1.2E-14 2.6E-19 158.4 14.0 240 52-462 233-478 (499)
59 PTZ00420 coronin; Provisional 99.6 9.7E-13 2.1E-17 156.9 31.3 252 52-462 70-335 (568)
60 KOG0647 mRNA export protein (c 99.6 2E-13 4.4E-18 147.4 21.2 254 30-449 45-311 (347)
61 KOG0316 Conserved WD40 repeat- 99.6 2E-13 4.3E-18 143.4 20.4 240 53-464 14-260 (307)
62 KOG0296 Angio-associated migra 99.6 3.3E-12 7.2E-17 140.8 30.5 315 52-461 60-398 (399)
63 KOG0318 WD40 repeat stress pro 99.6 1.8E-12 4E-17 147.7 29.3 131 342-475 205-365 (603)
64 KOG0283 WD40 repeat-containing 99.6 1.5E-13 3.2E-18 163.4 21.0 195 151-464 367-579 (712)
65 KOG0292 Vesicle coat complex C 99.6 8.3E-14 1.8E-18 165.0 18.2 212 173-483 31-260 (1202)
66 KOG0265 U5 snRNP-specific prot 99.6 4.2E-13 9.1E-18 144.9 22.0 242 55-458 68-335 (338)
67 KOG2055 WD40 repeat protein [G 99.5 2.8E-13 6E-18 152.5 20.8 281 55-463 212-514 (514)
68 KOG0973 Histone transcription 99.5 7.5E-13 1.6E-17 160.8 25.8 252 53-462 66-356 (942)
69 KOG0308 Conserved WD40 repeat- 99.5 1.1E-13 2.4E-18 160.4 17.4 240 73-465 35-289 (735)
70 KOG1036 Mitotic spindle checkp 99.5 8.4E-13 1.8E-17 143.0 22.1 229 54-451 52-294 (323)
71 KOG0293 WD40 repeat-containing 99.5 3.8E-13 8.1E-18 149.7 19.3 277 52-463 220-515 (519)
72 KOG0316 Conserved WD40 repeat- 99.5 5.5E-13 1.2E-17 140.2 19.3 209 98-472 10-224 (307)
73 KOG0645 WD40 repeat protein [G 99.5 3.8E-12 8.2E-17 136.1 25.6 207 97-461 6-225 (312)
74 KOG1539 WD repeat protein [Gen 99.5 3.4E-12 7.3E-17 151.4 26.7 96 343-459 550-646 (910)
75 KOG1539 WD repeat protein [Gen 99.5 7.6E-12 1.7E-16 148.5 29.6 120 345-467 466-612 (910)
76 KOG0288 WD40 repeat protein Ti 99.5 1.2E-13 2.7E-18 153.6 13.3 230 77-469 189-425 (459)
77 KOG0772 Uncharacterized conser 99.5 2.7E-12 5.9E-17 145.9 21.7 111 342-468 284-401 (641)
78 KOG0264 Nucleosome remodeling 99.5 7E-12 1.5E-16 141.2 22.8 111 342-461 288-404 (422)
79 KOG0313 Microtubule binding pr 99.4 1.3E-11 2.8E-16 136.6 24.2 102 342-463 315-420 (423)
80 KOG0277 Peroxisomal targeting 99.4 2.7E-12 5.8E-17 136.3 17.4 229 86-473 40-278 (311)
81 KOG0278 Serine/threonine kinas 99.4 1.2E-12 2.6E-17 138.6 13.9 279 53-464 11-300 (334)
82 KOG2445 Nuclear pore complex c 99.4 7.3E-11 1.6E-15 128.2 27.5 277 52-461 9-318 (361)
83 KOG1332 Vesicle coat complex C 99.4 4.7E-12 1E-16 133.9 17.6 262 53-464 8-289 (299)
84 KOG1407 WD40 repeat protein [F 99.4 2.6E-11 5.7E-16 129.2 23.3 222 75-461 78-311 (313)
85 KOG0306 WD40-repeat-containing 99.4 2.3E-11 5.1E-16 143.1 24.5 300 56-473 320-634 (888)
86 KOG0772 Uncharacterized conser 99.4 7.3E-12 1.6E-16 142.5 19.1 105 344-465 334-449 (641)
87 KOG2096 WD40 repeat protein [G 99.4 2.2E-11 4.7E-16 132.5 21.2 190 197-459 194-400 (420)
88 KOG0301 Phospholipase A2-activ 99.4 3.5E-11 7.5E-16 140.9 24.4 200 172-461 34-249 (745)
89 KOG0275 Conserved WD40 repeat- 99.4 1.8E-12 3.8E-17 140.7 12.4 108 343-470 279-387 (508)
90 KOG0289 mRNA splicing factor [ 99.4 4.6E-11 1E-15 134.0 24.0 241 52-460 257-505 (506)
91 KOG0289 mRNA splicing factor [ 99.4 2.5E-11 5.4E-16 136.1 21.7 224 76-459 232-460 (506)
92 KOG0277 Peroxisomal targeting 99.4 1.4E-11 3.1E-16 130.8 18.4 248 53-459 46-307 (311)
93 KOG1408 WD40 repeat protein [F 99.4 1.2E-11 2.6E-16 144.3 19.2 218 173-462 481-714 (1080)
94 KOG1274 WD40 repeat protein [G 99.4 8.9E-11 1.9E-15 140.9 26.4 241 53-462 10-263 (933)
95 KOG0305 Anaphase promoting com 99.4 3.7E-11 8.1E-16 139.7 22.3 238 74-474 187-432 (484)
96 KOG0269 WD40 repeat-containing 99.4 2.8E-12 6.1E-17 151.2 12.8 110 345-473 195-309 (839)
97 KOG0643 Translation initiation 99.4 5.5E-11 1.2E-15 127.2 20.7 213 100-471 5-230 (327)
98 KOG0308 Conserved WD40 repeat- 99.4 2.7E-12 5.8E-17 149.1 11.6 111 343-473 134-255 (735)
99 KOG0640 mRNA cleavage stimulat 99.3 9.7E-12 2.1E-16 134.7 14.7 100 347-464 236-338 (430)
100 KOG0641 WD40 repeat protein [G 99.3 8.8E-10 1.9E-14 115.6 27.4 256 53-462 86-350 (350)
101 KOG0282 mRNA splicing factor [ 99.3 3.9E-12 8.6E-17 144.0 10.8 206 97-462 206-416 (503)
102 KOG1273 WD40 repeat protein [G 99.3 6E-11 1.3E-15 129.0 19.2 241 74-462 34-281 (405)
103 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 6.1E-10 1.3E-14 118.3 25.2 176 172-464 10-190 (300)
104 KOG0268 Sof1-like rRNA process 99.3 1.3E-11 2.8E-16 136.0 12.1 215 172-463 88-304 (433)
105 KOG0639 Transducin-like enhanc 99.3 1.3E-10 2.9E-15 131.8 19.9 259 74-461 430-704 (705)
106 KOG0267 Microtubule severing p 99.3 6.3E-12 1.4E-16 147.4 9.6 215 75-452 40-259 (825)
107 KOG0294 WD40 repeat-containing 99.3 3.3E-10 7.1E-15 123.5 21.5 221 74-401 52-282 (362)
108 KOG1446 Histone H3 (Lys4) meth 99.3 2E-09 4.2E-14 117.6 27.4 244 55-464 55-306 (311)
109 KOG0264 Nucleosome remodeling 99.3 1.2E-10 2.6E-15 131.4 18.3 107 342-467 243-353 (422)
110 KOG0301 Phospholipase A2-activ 99.3 3.2E-10 6.8E-15 133.0 22.1 212 78-463 74-290 (745)
111 KOG0296 Angio-associated migra 99.3 4.2E-10 9.1E-15 124.5 21.8 238 55-399 147-397 (399)
112 KOG4378 Nuclear protein COP1 [ 99.3 1.4E-10 3.1E-15 131.5 18.3 109 344-473 182-293 (673)
113 KOG0299 U3 snoRNP-associated p 99.3 2.1E-10 4.6E-15 129.7 19.5 219 72-452 211-446 (479)
114 KOG0293 WD40 repeat-containing 99.3 1.1E-10 2.3E-15 130.5 16.8 240 51-401 264-514 (519)
115 KOG0275 Conserved WD40 repeat- 99.3 1.1E-10 2.3E-15 127.0 16.2 255 55-478 212-484 (508)
116 KOG0267 Microtubule severing p 99.3 8.8E-12 1.9E-16 146.2 8.3 121 343-483 86-206 (825)
117 KOG2106 Uncharacterized conser 99.2 3.4E-09 7.4E-14 121.0 27.9 96 344-458 423-518 (626)
118 KOG0270 WD40 repeat-containing 99.2 2.4E-10 5.3E-15 128.7 18.6 179 171-463 264-451 (463)
119 KOG0284 Polyadenylation factor 99.2 3.2E-11 6.8E-16 134.6 11.4 123 342-484 195-317 (464)
120 KOG0307 Vesicle coat complex C 99.2 4.1E-11 8.8E-16 146.5 13.2 246 63-463 66-329 (1049)
121 KOG2919 Guanine nucleotide-bin 99.2 3.1E-10 6.7E-15 123.9 18.5 122 346-484 227-351 (406)
122 KOG0647 mRNA export protein (c 99.2 2.9E-09 6.3E-14 115.7 25.3 251 55-472 26-292 (347)
123 PRK11028 6-phosphogluconolacto 99.2 9E-09 2E-13 114.4 30.1 104 346-465 194-308 (330)
124 KOG0640 mRNA cleavage stimulat 99.2 3.6E-10 7.9E-15 122.7 17.7 200 55-401 111-336 (430)
125 KOG2109 WD40 repeat protein [G 99.2 1.4E-11 3.1E-16 143.6 6.7 316 74-473 251-588 (788)
126 KOG2096 WD40 repeat protein [G 99.2 4.6E-10 1E-14 122.4 17.4 107 343-462 203-309 (420)
127 KOG0641 WD40 repeat protein [G 99.2 1.1E-08 2.4E-13 107.5 26.3 100 342-461 197-303 (350)
128 KOG1063 RNA polymerase II elon 99.2 2.3E-09 5E-14 125.9 23.6 100 348-463 551-650 (764)
129 KOG4283 Transcription-coupled 99.2 2.4E-09 5.2E-14 115.9 21.8 133 172-400 123-276 (397)
130 KOG0300 WD40 repeat-containing 99.2 2.6E-10 5.6E-15 123.9 14.3 104 343-466 288-391 (481)
131 KOG0283 WD40 repeat-containing 99.2 1.1E-09 2.3E-14 131.1 20.5 107 342-470 383-490 (712)
132 KOG0650 WD40 repeat nucleolar 99.2 3.1E-09 6.6E-14 123.2 22.4 316 53-459 397-733 (733)
133 KOG0299 U3 snoRNP-associated p 99.1 2.5E-09 5.4E-14 121.2 20.3 176 172-463 223-412 (479)
134 KOG1274 WD40 repeat protein [G 99.1 4.4E-09 9.6E-14 126.7 23.6 223 77-458 68-297 (933)
135 KOG2106 Uncharacterized conser 99.1 2.8E-08 6.2E-13 113.6 28.5 297 56-496 200-506 (626)
136 KOG4283 Transcription-coupled 99.1 1.5E-09 3.4E-14 117.4 17.3 111 345-462 164-277 (397)
137 KOG0313 Microtubule binding pr 99.1 3.3E-09 7.2E-14 117.9 19.6 240 52-400 140-418 (423)
138 KOG0294 WD40 repeat-containing 99.1 1.3E-08 2.8E-13 111.3 23.4 209 172-464 62-284 (362)
139 KOG1036 Mitotic spindle checkp 99.1 9.9E-09 2.1E-13 111.9 21.6 245 54-465 11-266 (323)
140 KOG0973 Histone transcription 99.1 6.4E-10 1.4E-14 135.8 12.7 139 343-484 29-182 (942)
141 KOG2048 WD40 repeat protein [G 99.1 3.4E-08 7.3E-13 116.2 26.3 246 53-462 69-320 (691)
142 KOG1408 WD40 repeat protein [F 99.1 3.3E-09 7.1E-14 124.4 17.8 133 332-469 468-634 (1080)
143 KOG0646 WD40 repeat protein [G 99.1 5.7E-09 1.2E-13 118.5 18.6 221 72-442 90-330 (476)
144 PRK01742 tolB translocation pr 99.0 3.2E-08 7E-13 114.9 24.9 89 348-462 313-402 (429)
145 COG2319 FOG: WD40 repeat [Gene 99.0 8E-07 1.7E-11 94.3 32.2 178 172-464 133-317 (466)
146 KOG1034 Transcriptional repres 99.0 2.3E-08 5E-13 109.8 19.7 101 76-222 107-214 (385)
147 KOG0650 WD40 repeat nucleolar 99.0 3.7E-09 8E-14 122.5 13.5 99 346-463 584-682 (733)
148 KOG0646 WD40 repeat protein [G 99.0 2.4E-08 5.3E-13 113.4 19.1 118 343-469 192-315 (476)
149 KOG0639 Transducin-like enhanc 99.0 3.4E-09 7.4E-14 120.7 11.9 201 185-459 412-620 (705)
150 KOG0321 WD40 repeat-containing 98.9 1.2E-08 2.5E-13 119.3 15.5 109 347-473 238-360 (720)
151 KOG4328 WD40 protein [Function 98.9 2.6E-08 5.7E-13 113.0 17.6 106 343-459 339-448 (498)
152 KOG1272 WD40-repeat-containing 98.9 9.5E-10 2.1E-14 124.5 6.2 208 173-461 151-362 (545)
153 KOG2055 WD40 repeat protein [G 98.9 1.1E-07 2.3E-12 108.2 22.1 96 345-462 321-418 (514)
154 KOG2048 WD40 repeat protein [G 98.9 4.3E-07 9.3E-12 107.2 27.2 230 74-465 36-279 (691)
155 PRK03629 tolB translocation pr 98.9 5.9E-07 1.3E-11 104.7 28.5 83 351-455 313-397 (429)
156 KOG0269 WD40 repeat-containing 98.9 9.4E-09 2E-13 122.1 13.6 102 342-462 149-251 (839)
157 KOG0302 Ribosome Assembly prot 98.9 6E-09 1.3E-13 115.9 11.2 106 342-465 273-382 (440)
158 KOG4328 WD40 protein [Function 98.9 3.6E-08 7.8E-13 111.9 17.0 100 346-461 298-399 (498)
159 PRK05137 tolB translocation pr 98.9 1.2E-06 2.5E-11 102.0 29.5 95 350-466 315-415 (435)
160 KOG4378 Nuclear protein COP1 [ 98.9 4.6E-08 1E-12 111.6 16.5 207 75-443 91-305 (673)
161 KOG1063 RNA polymerase II elon 98.9 1.1E-07 2.5E-12 112.0 19.9 250 75-463 25-299 (764)
162 KOG0307 Vesicle coat complex C 98.9 7.6E-09 1.7E-13 127.1 10.7 103 342-462 177-285 (1049)
163 COG2319 FOG: WD40 repeat [Gene 98.9 3.6E-06 7.9E-11 89.3 29.7 223 81-464 130-362 (466)
164 PRK11028 6-phosphogluconolacto 98.8 1.1E-06 2.4E-11 97.8 25.1 109 344-466 143-263 (330)
165 KOG0270 WD40 repeat-containing 98.8 1.3E-07 2.9E-12 107.0 17.5 129 52-232 239-374 (463)
166 KOG1034 Transcriptional repres 98.8 1.9E-08 4.2E-13 110.4 10.2 101 343-462 109-212 (385)
167 KOG1963 WD40 repeat protein [G 98.8 6.1E-07 1.3E-11 108.4 22.8 286 73-465 26-326 (792)
168 KOG1273 WD40 repeat protein [G 98.7 3.3E-08 7.2E-13 108.1 10.2 59 342-401 38-96 (405)
169 KOG0644 Uncharacterized conser 98.7 3.5E-08 7.6E-13 117.8 11.0 280 51-461 185-468 (1113)
170 KOG1188 WD40 repeat protein [G 98.7 1.4E-07 2.9E-12 104.3 14.6 103 347-466 141-247 (376)
171 KOG1332 Vesicle coat complex C 98.7 1.9E-07 4.1E-12 99.6 14.4 114 342-473 26-149 (299)
172 KOG1445 Tumor-specific antigen 98.7 1.6E-07 3.5E-12 109.5 14.9 94 343-454 694-787 (1012)
173 KOG0322 G-protein beta subunit 98.7 3E-07 6.5E-12 98.9 15.9 98 343-460 221-322 (323)
174 KOG2111 Uncharacterized conser 98.7 1.5E-05 3.3E-10 87.9 28.9 119 343-465 197-326 (346)
175 KOG1188 WD40 repeat protein [G 98.7 2E-07 4.3E-12 103.0 14.2 245 75-461 40-346 (376)
176 KOG1009 Chromatin assembly com 98.7 6.3E-08 1.4E-12 108.7 10.4 138 342-483 29-175 (434)
177 KOG2110 Uncharacterized conser 98.7 1.3E-05 2.8E-10 89.9 28.3 195 174-466 107-336 (391)
178 KOG0290 Conserved WD40 repeat- 98.7 1.1E-06 2.4E-11 95.7 19.2 176 172-453 172-358 (364)
179 PRK04922 tolB translocation pr 98.7 5.3E-06 1.1E-10 96.7 26.3 95 350-466 317-414 (433)
180 PRK02889 tolB translocation pr 98.7 1.1E-05 2.3E-10 94.0 28.3 73 372-465 330-405 (427)
181 KOG0771 Prolactin regulatory e 98.6 4.4E-07 9.5E-12 102.5 15.5 74 370-462 282-355 (398)
182 KOG1963 WD40 repeat protein [G 98.6 2.2E-06 4.7E-11 103.8 22.2 231 173-464 37-284 (792)
183 PF08662 eIF2A: Eukaryotic tra 98.6 2.1E-06 4.6E-11 90.0 19.6 52 347-400 123-179 (194)
184 KOG1587 Cytoplasmic dynein int 98.6 1.6E-06 3.4E-11 103.8 20.7 97 348-462 419-517 (555)
185 KOG0303 Actin-binding protein 98.6 7.9E-07 1.7E-11 99.8 14.3 107 343-469 148-257 (472)
186 KOG0302 Ribosome Assembly prot 98.5 1.8E-07 3.9E-12 104.4 8.6 122 343-490 228-356 (440)
187 PF08662 eIF2A: Eukaryotic tra 98.5 8.1E-07 1.8E-11 93.1 12.9 93 345-461 79-179 (194)
188 KOG1009 Chromatin assembly com 98.5 1.9E-05 4.1E-10 89.3 23.8 93 351-463 263-374 (434)
189 PF10282 Lactonase: Lactonase, 98.5 0.00026 5.7E-09 80.2 33.5 82 371-467 246-328 (345)
190 KOG1007 WD repeat protein TSSC 98.5 9.4E-06 2E-10 88.5 20.3 242 74-462 75-362 (370)
191 KOG0303 Actin-binding protein 98.5 4.3E-06 9.3E-11 94.1 18.0 128 52-230 77-214 (472)
192 KOG1517 Guanine nucleotide bin 98.5 4.3E-06 9.3E-11 102.6 18.9 101 343-463 1273-1383(1387)
193 PRK00178 tolB translocation pr 98.5 0.00012 2.5E-09 85.0 29.9 95 350-466 312-409 (430)
194 KOG1517 Guanine nucleotide bin 98.5 1.3E-05 2.7E-10 98.6 22.1 101 345-461 1227-1333(1387)
195 KOG1524 WD40 repeat-containing 98.5 4E-06 8.7E-11 96.9 16.7 208 75-461 75-287 (737)
196 KOG2394 WD40 protein DMR-N9 [G 98.5 1.6E-07 3.5E-12 108.3 5.5 101 361-483 282-384 (636)
197 PRK01742 tolB translocation pr 98.4 6.2E-06 1.3E-10 96.0 18.6 89 351-462 274-362 (429)
198 KOG2445 Nuclear pore complex c 98.4 5.5E-06 1.2E-10 91.0 16.4 39 360-399 279-317 (361)
199 KOG2394 WD40 protein DMR-N9 [G 98.4 1.6E-06 3.5E-11 100.3 12.9 89 329-441 296-384 (636)
200 KOG0290 Conserved WD40 repeat- 98.4 6.5E-06 1.4E-10 89.8 16.7 105 343-465 213-322 (364)
201 KOG0642 Cell-cycle nuclear pro 98.4 7E-07 1.5E-11 103.8 9.4 110 342-461 309-426 (577)
202 KOG3881 Uncharacterized conser 98.4 1.9E-05 4.1E-10 89.0 20.1 105 342-465 219-324 (412)
203 KOG1445 Tumor-specific antigen 98.4 5E-07 1.1E-11 105.5 7.4 98 343-460 644-749 (1012)
204 KOG2139 WD40 repeat protein [G 98.4 1.1E-05 2.4E-10 90.2 17.4 100 347-467 216-315 (445)
205 TIGR02800 propeller_TolB tol-p 98.4 0.00013 2.9E-09 83.4 26.8 90 350-461 303-394 (417)
206 KOG1007 WD repeat protein TSSC 98.4 2E-05 4.4E-10 86.0 18.2 101 346-465 190-293 (370)
207 PRK05137 tolB translocation pr 98.3 6.9E-05 1.5E-09 87.4 23.4 96 349-465 270-368 (435)
208 PRK03629 tolB translocation pr 98.3 6.7E-05 1.4E-09 87.7 22.9 93 350-461 268-363 (429)
209 PRK04922 tolB translocation pr 98.3 5.6E-05 1.2E-09 88.1 21.7 95 349-462 272-369 (433)
210 KOG0771 Prolactin regulatory e 98.3 3E-06 6.5E-11 95.9 9.5 130 342-473 159-324 (398)
211 PRK04792 tolB translocation pr 98.2 0.00066 1.4E-08 80.0 29.0 95 350-465 331-427 (448)
212 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.0019 4.2E-08 74.0 31.6 99 346-464 212-333 (352)
213 PRK02889 tolB translocation pr 98.2 7E-05 1.5E-09 87.3 20.4 93 351-462 266-361 (427)
214 KOG0321 WD40 repeat-containing 98.2 3.2E-05 7E-10 91.3 15.9 97 362-467 207-307 (720)
215 PF00400 WD40: WD domain, G-be 98.2 3.7E-06 7.9E-11 64.6 5.5 38 360-398 2-39 (39)
216 KOG4227 WD40 repeat protein [G 98.1 0.00037 8.1E-09 78.6 22.8 300 53-460 53-386 (609)
217 KOG0300 WD40 repeat-containing 98.1 8.3E-06 1.8E-10 89.6 9.0 128 343-473 164-314 (481)
218 PRK01029 tolB translocation pr 98.1 0.00081 1.8E-08 78.8 25.6 85 362-466 319-406 (428)
219 KOG0644 Uncharacterized conser 98.1 1.1E-06 2.4E-11 105.5 1.7 96 342-461 205-300 (1113)
220 COG2706 3-carboxymuconate cycl 98.1 0.0062 1.3E-07 68.8 30.7 105 348-468 212-328 (346)
221 KOG1310 WD40 repeat protein [G 98.1 0.00012 2.5E-09 85.4 17.4 122 344-468 165-310 (758)
222 KOG2919 Guanine nucleotide-bin 98.1 7.4E-05 1.6E-09 82.7 15.0 187 72-400 167-367 (406)
223 KOG0322 G-protein beta subunit 98.1 3.9E-05 8.4E-10 83.1 12.5 57 342-399 266-322 (323)
224 KOG0642 Cell-cycle nuclear pro 98.0 6.5E-05 1.4E-09 87.8 15.0 56 344-400 506-561 (577)
225 KOG1538 Uncharacterized conser 98.0 3.2E-05 6.9E-10 91.3 12.5 109 347-459 31-160 (1081)
226 PRK04792 tolB translocation pr 98.0 0.00044 9.5E-09 81.4 22.0 97 350-466 287-385 (448)
227 KOG1538 Uncharacterized conser 98.0 0.00022 4.8E-09 84.5 18.9 100 73-220 22-123 (1081)
228 TIGR02800 propeller_TolB tol-p 98.0 0.00068 1.5E-08 77.6 22.8 93 349-462 258-355 (417)
229 KOG1272 WD40-repeat-containing 98.0 1.5E-05 3.2E-10 91.4 8.4 182 173-470 231-416 (545)
230 KOG0649 WD40 repeat protein [G 98.0 0.0002 4.4E-09 76.9 15.9 99 345-465 132-239 (325)
231 KOG0649 WD40 repeat protein [G 97.9 0.0026 5.7E-08 68.6 22.9 65 172-236 135-203 (325)
232 PRK00178 tolB translocation pr 97.9 0.0016 3.6E-08 75.5 23.0 96 349-465 267-365 (430)
233 KOG2139 WD40 repeat protein [G 97.9 0.00015 3.2E-09 81.4 13.2 78 365-462 192-269 (445)
234 KOG1587 Cytoplasmic dynein int 97.9 0.0004 8.7E-09 83.6 17.5 101 344-463 365-474 (555)
235 PRK04043 tolB translocation pr 97.8 0.021 4.6E-07 67.1 30.4 49 174-222 214-268 (419)
236 KOG2315 Predicted translation 97.8 0.002 4.2E-08 75.9 21.2 53 346-400 333-390 (566)
237 PF02239 Cytochrom_D1: Cytochr 97.8 0.0047 1E-07 71.3 23.6 177 173-463 16-204 (369)
238 PF02239 Cytochrom_D1: Cytochr 97.8 0.0003 6.5E-09 81.0 13.8 100 346-466 13-113 (369)
239 KOG2321 WD40 repeat protein [G 97.7 0.0022 4.7E-08 75.7 20.5 206 189-465 130-347 (703)
240 KOG1310 WD40 repeat protein [G 97.7 7E-05 1.5E-09 87.2 8.3 82 362-462 43-126 (758)
241 KOG0974 WD-repeat protein WDR6 97.7 0.00011 2.4E-09 90.8 10.4 97 343-460 149-245 (967)
242 KOG4227 WD40 repeat protein [G 97.7 0.00075 1.6E-08 76.2 15.7 220 172-463 77-324 (609)
243 KOG4547 WD40 repeat-containing 97.7 0.0026 5.7E-08 75.2 20.1 53 348-400 163-220 (541)
244 KOG3881 Uncharacterized conser 97.7 0.0017 3.6E-08 73.8 17.5 81 344-445 264-345 (412)
245 KOG0974 WD-repeat protein WDR6 97.7 0.00073 1.6E-08 83.8 15.7 103 343-467 191-294 (967)
246 KOG1524 WD40 repeat-containing 97.6 0.00076 1.6E-08 78.8 14.2 85 349-456 166-250 (737)
247 PLN02919 haloacid dehalogenase 97.6 0.02 4.4E-07 74.4 28.6 72 373-463 807-890 (1057)
248 PF00400 WD40: WD domain, G-be 97.5 0.00029 6.2E-09 54.0 6.8 37 421-459 3-39 (39)
249 PF10282 Lactonase: Lactonase, 97.5 0.063 1.4E-06 61.1 28.5 55 347-401 265-323 (345)
250 KOG1523 Actin-related protein 97.5 0.0034 7.4E-08 69.9 17.4 88 367-459 144-234 (361)
251 KOG4497 Uncharacterized conser 97.5 0.0011 2.3E-08 74.0 13.1 93 346-459 111-238 (447)
252 PRK01029 tolB translocation pr 97.5 0.0071 1.5E-07 71.0 20.9 75 371-461 282-359 (428)
253 KOG2321 WD40 repeat protein [G 97.5 0.0022 4.9E-08 75.6 16.3 122 349-492 155-282 (703)
254 PF04762 IKI3: IKI3 family; I 97.5 0.14 2.9E-06 66.0 33.3 98 348-463 236-335 (928)
255 KOG1240 Protein kinase contain 97.5 0.018 3.9E-07 73.1 24.3 103 345-464 1213-1337(1431)
256 KOG1240 Protein kinase contain 97.4 0.0017 3.7E-08 81.7 15.1 92 359-463 1038-1130(1431)
257 KOG1334 WD40 repeat protein [G 97.4 0.0032 6.9E-08 73.2 15.8 121 51-222 137-266 (559)
258 KOG4547 WD40 repeat-containing 97.4 0.012 2.6E-07 69.8 20.5 98 344-463 119-222 (541)
259 KOG1354 Serine/threonine prote 97.3 0.042 9.2E-07 62.0 21.9 79 369-463 272-361 (433)
260 KOG2314 Translation initiation 97.2 0.039 8.5E-07 65.3 21.9 288 72-462 219-526 (698)
261 KOG1409 Uncharacterized conser 97.2 0.0076 1.7E-07 67.8 14.7 219 172-464 45-273 (404)
262 KOG1523 Actin-related protein 97.2 0.0071 1.5E-07 67.5 14.3 127 343-490 26-155 (361)
263 KOG2315 Predicted translation 97.1 0.13 2.9E-06 61.1 25.1 98 350-470 252-353 (566)
264 KOG4497 Uncharacterized conser 97.1 0.0028 6.2E-08 70.7 10.5 88 346-453 68-155 (447)
265 KOG1064 RAVE (regulator of V-A 97.1 0.0016 3.5E-08 84.4 9.8 88 347-466 2313-2403(2439)
266 KOG1912 WD40 repeat protein [G 96.9 0.13 2.7E-06 63.2 22.7 124 52-218 51-185 (1062)
267 COG5354 Uncharacterized protei 96.9 0.087 1.9E-06 62.1 20.7 284 72-461 41-348 (561)
268 smart00320 WD40 WD40 repeats. 96.9 0.0026 5.6E-08 44.8 5.4 38 360-398 3-40 (40)
269 KOG3914 WD repeat protein WDR4 96.9 0.0027 5.8E-08 72.4 8.1 100 346-466 129-228 (390)
270 COG2706 3-carboxymuconate cycl 96.8 0.47 1E-05 54.2 25.3 30 373-402 294-323 (346)
271 PRK04043 tolB translocation pr 96.8 0.08 1.7E-06 62.3 20.1 98 348-466 256-360 (419)
272 TIGR02658 TTQ_MADH_Hv methylam 96.7 0.018 3.9E-07 66.2 13.5 97 349-464 27-139 (352)
273 KOG1912 WD40 repeat protein [G 96.7 0.025 5.4E-07 69.0 14.3 101 343-462 441-552 (1062)
274 PF11768 DUF3312: Protein of u 96.5 0.018 3.9E-07 68.7 11.5 91 351-463 238-331 (545)
275 PF13360 PQQ_2: PQQ-like domai 96.5 1.5 3.2E-05 46.0 27.0 94 345-463 128-232 (238)
276 COG4946 Uncharacterized protei 96.3 1.5 3.3E-05 51.8 24.9 114 54-223 357-481 (668)
277 TIGR03300 assembly_YfgL outer 96.2 3.2 6.9E-05 47.4 27.7 57 173-229 115-173 (377)
278 KOG1275 PAB-dependent poly(A) 96.2 0.14 2.9E-06 63.9 16.8 182 173-460 157-341 (1118)
279 PF03178 CPSF_A: CPSF A subuni 96.1 0.33 7.2E-06 54.5 18.7 97 349-463 107-204 (321)
280 COG5170 CDC55 Serine/threonine 96.0 0.077 1.7E-06 59.3 12.7 80 365-462 276-368 (460)
281 COG4946 Uncharacterized protei 96.0 0.068 1.5E-06 62.4 12.5 98 344-462 376-478 (668)
282 PF15492 Nbas_N: Neuroblastoma 96.0 2.7 5.8E-05 47.0 24.0 95 368-464 146-262 (282)
283 KOG1645 RING-finger-containing 95.9 0.02 4.4E-07 65.6 7.6 96 351-467 175-272 (463)
284 KOG1334 WD40 repeat protein [G 95.8 0.028 6.1E-07 65.7 8.7 56 343-399 410-465 (559)
285 TIGR03300 assembly_YfgL outer 95.8 4.9 0.00011 45.9 28.6 92 345-459 285-377 (377)
286 PF07433 DUF1513: Protein of u 95.6 3.3 7.2E-05 47.1 23.5 93 349-463 138-249 (305)
287 KOG1275 PAB-dependent poly(A) 95.4 0.28 6.1E-06 61.3 15.2 52 173-224 197-259 (1118)
288 PF15492 Nbas_N: Neuroblastoma 95.3 4 8.7E-05 45.7 22.3 32 367-399 227-258 (282)
289 smart00320 WD40 WD40 repeats. 95.2 0.063 1.4E-06 37.5 5.8 29 431-459 12-40 (40)
290 COG5354 Uncharacterized protei 95.2 1.3 2.8E-05 52.7 19.2 78 347-453 338-421 (561)
291 PF03178 CPSF_A: CPSF A subuni 94.7 9.2 0.0002 43.0 26.1 50 173-222 62-118 (321)
292 KOG0280 Uncharacterized conser 94.7 0.18 3.9E-06 56.2 10.0 104 344-466 138-246 (339)
293 KOG4532 WD40-like repeat conta 94.6 0.39 8.4E-06 53.2 12.2 100 347-465 138-237 (344)
294 KOG0309 Conserved WD40 repeat- 94.3 0.23 4.9E-06 60.8 10.3 106 73-222 34-148 (1081)
295 KOG4190 Uncharacterized conser 94.2 0.045 9.8E-07 64.5 4.3 88 361-465 727-814 (1034)
296 KOG4415 Uncharacterized conser 93.9 0.044 9.6E-07 57.1 3.1 38 682-720 20-58 (247)
297 PF04762 IKI3: IKI3 family; I 93.8 16 0.00035 47.6 26.2 76 367-460 302-378 (928)
298 KOG4190 Uncharacterized conser 93.6 0.12 2.6E-06 61.1 6.2 118 343-463 751-908 (1034)
299 KOG3621 WD40 repeat-containing 93.0 0.26 5.7E-06 60.2 8.0 103 344-462 50-155 (726)
300 PF08553 VID27: VID27 cytoplas 92.8 11 0.00024 48.1 21.8 56 343-400 592-647 (794)
301 KOG2314 Translation initiation 92.1 1.2 2.5E-05 53.5 11.5 81 349-450 282-365 (698)
302 KOG0280 Uncharacterized conser 91.5 0.58 1.3E-05 52.4 7.8 102 343-465 182-288 (339)
303 KOG2695 WD40 repeat protein [G 91.5 0.47 1E-05 54.0 7.2 104 344-463 269-378 (425)
304 KOG1064 RAVE (regulator of V-A 91.1 0.78 1.7E-05 61.1 9.5 118 343-465 2224-2370(2439)
305 KOG1832 HIV-1 Vpr-binding prot 91.0 0.19 4.2E-06 62.3 3.8 107 74-228 1112-1223(1516)
306 PF08450 SGL: SMP-30/Gluconola 90.9 26 0.00056 37.6 25.3 98 349-460 115-212 (246)
307 KOG1354 Serine/threonine prote 90.8 0.65 1.4E-05 52.9 7.4 80 370-466 26-121 (433)
308 PF12894 Apc4_WD40: Anaphase-p 90.8 0.55 1.2E-05 38.9 5.2 31 431-461 11-41 (47)
309 PF00930 DPPIV_N: Dipeptidyl p 90.6 0.67 1.4E-05 53.0 7.6 105 348-465 22-135 (353)
310 COG0823 TolB Periplasmic compo 90.6 0.88 1.9E-05 53.9 8.8 98 349-467 218-318 (425)
311 PRK02888 nitrous-oxide reducta 90.2 2.3 4.9E-05 52.5 11.9 116 345-464 211-354 (635)
312 PLN02919 haloacid dehalogenase 90.1 3.2 7E-05 54.6 14.1 112 345-462 701-834 (1057)
313 PF07433 DUF1513: Protein of u 90.1 40 0.00087 38.6 27.4 71 369-464 216-286 (305)
314 PF13360 PQQ_2: PQQ-like domai 89.9 28 0.0006 36.5 24.2 57 173-229 86-150 (238)
315 KOG4714 Nucleoporin [Nuclear s 89.8 0.9 1.9E-05 50.2 7.3 115 343-459 196-316 (319)
316 KOG4640 Anaphase-promoting com 89.8 1.2 2.6E-05 54.1 9.0 75 371-467 22-98 (665)
317 KOG3617 WD40 and TPR repeat-co 89.5 0.79 1.7E-05 57.0 7.2 99 343-465 35-135 (1416)
318 KOG0309 Conserved WD40 repeat- 89.3 1.8 3.9E-05 53.5 9.9 101 342-462 130-233 (1081)
319 PF11768 DUF3312: Protein of u 89.2 0.91 2E-05 54.8 7.4 55 344-401 276-330 (545)
320 KOG2066 Vacuolar assembly/sort 89.1 1.3 2.9E-05 54.9 8.8 91 343-463 53-148 (846)
321 KOG4532 WD40-like repeat conta 87.9 32 0.00068 38.8 17.4 79 372-465 206-286 (344)
322 KOG1920 IkappaB kinase complex 87.8 1.1E+02 0.0024 40.7 24.5 52 348-400 265-322 (1265)
323 PF12894 Apc4_WD40: Anaphase-p 87.8 1.3 2.7E-05 36.8 5.2 30 369-399 11-40 (47)
324 KOG4640 Anaphase-promoting com 87.6 1.6 3.5E-05 53.1 8.1 58 342-401 35-93 (665)
325 PF00780 CNH: CNH domain; Int 87.5 11 0.00024 40.9 14.0 56 168-223 109-169 (275)
326 KOG2066 Vacuolar assembly/sort 87.4 16 0.00034 46.1 16.2 46 172-217 92-144 (846)
327 KOG1920 IkappaB kinase complex 86.6 51 0.0011 43.5 20.5 98 349-463 222-324 (1265)
328 KOG2695 WD40 repeat protein [G 85.7 1.6 3.6E-05 49.8 6.4 110 345-472 230-343 (425)
329 KOG2041 WD40 repeat protein [G 85.6 1.4 3E-05 54.2 6.0 99 343-459 30-143 (1189)
330 PF14783 BBS2_Mid: Ciliary BBS 85.5 8.3 0.00018 37.8 10.3 65 372-460 2-70 (111)
331 COG0823 TolB Periplasmic compo 85.0 7.5 0.00016 46.2 11.8 102 329-452 243-346 (425)
332 PF08450 SGL: SMP-30/Gluconola 84.9 59 0.0013 34.8 29.2 59 372-451 186-245 (246)
333 PF10168 Nup88: Nuclear pore c 83.9 38 0.00083 43.1 17.8 88 370-462 85-180 (717)
334 PRK11138 outer membrane biogen 83.4 95 0.0021 36.0 26.3 86 347-460 302-393 (394)
335 KOG3914 WD repeat protein WDR4 82.6 1.8 3.8E-05 50.2 5.1 74 73-193 161-235 (390)
336 PF00780 CNH: CNH domain; Int 82.1 29 0.00062 37.7 14.2 43 187-229 223-265 (275)
337 KOG4714 Nucleoporin [Nuclear s 80.9 1.6 3.6E-05 48.3 3.9 94 349-461 159-254 (319)
338 PF08553 VID27: VID27 cytoplas 79.9 13 0.00027 47.6 11.6 93 347-461 550-647 (794)
339 KOG0882 Cyclophilin-related pe 79.8 6.3 0.00014 46.6 8.2 112 346-463 119-233 (558)
340 KOG2395 Protein involved in va 79.7 78 0.0017 38.7 17.1 55 343-399 445-499 (644)
341 PF04053 Coatomer_WDAD: Coatom 79.6 94 0.002 37.4 18.2 58 381-462 117-174 (443)
342 KOG1645 RING-finger-containing 79.4 5.7 0.00012 46.4 7.7 52 172-223 215-270 (463)
343 PRK13616 lipoprotein LpqB; Pro 78.6 11 0.00023 46.8 10.3 97 349-466 379-482 (591)
344 KOG2114 Vacuolar assembly/sort 78.4 2.2E+02 0.0047 36.9 22.0 84 348-454 192-276 (933)
345 PRK11138 outer membrane biogen 77.9 55 0.0012 37.9 15.5 51 345-398 341-392 (394)
346 COG5170 CDC55 Serine/threonine 77.5 4.7 0.0001 45.7 6.1 77 370-463 27-119 (460)
347 KOG2114 Vacuolar assembly/sort 77.4 11 0.00024 47.7 9.8 106 342-459 38-153 (933)
348 PF02897 Peptidase_S9_N: Proly 77.1 21 0.00045 41.4 11.7 114 333-464 133-261 (414)
349 PF04841 Vps16_N: Vps16, N-ter 76.2 1.7E+02 0.0037 34.6 25.0 48 172-220 60-110 (410)
350 COG3386 Gluconolactonase [Carb 76.0 19 0.00041 41.1 10.7 77 370-465 111-197 (307)
351 KOG2079 Vacuolar assembly/sort 74.9 3.5 7.5E-05 53.0 4.8 72 375-466 93-165 (1206)
352 KOG1409 Uncharacterized conser 74.9 13 0.00029 42.8 8.8 111 358-474 103-241 (404)
353 PF00930 DPPIV_N: Dipeptidyl p 74.1 1.1E+02 0.0024 35.0 16.5 50 173-222 23-74 (353)
354 COG3391 Uncharacterized conser 74.0 45 0.00098 38.9 13.4 94 347-461 94-190 (381)
355 KOG3617 WD40 and TPR repeat-co 74.0 5.1 0.00011 50.4 5.7 59 341-400 73-131 (1416)
356 KOG2079 Vacuolar assembly/sort 73.9 7.8 0.00017 50.1 7.4 100 344-462 104-204 (1206)
357 PF05694 SBP56: 56kDa selenium 73.8 36 0.00078 40.8 12.3 45 172-216 221-274 (461)
358 KOG1832 HIV-1 Vpr-binding prot 72.6 2.2 4.7E-05 53.7 2.2 99 343-463 1117-1216(1516)
359 COG3386 Gluconolactonase [Carb 71.7 1.9E+02 0.0042 33.1 21.2 101 348-461 142-243 (307)
360 PRK02888 nitrous-oxide reducta 71.3 30 0.00064 43.2 11.3 106 348-462 295-405 (635)
361 PF07676 PD40: WD40-like Beta 70.6 8.6 0.00019 29.7 4.5 27 432-458 9-38 (39)
362 PRK13616 lipoprotein LpqB; Pro 69.2 22 0.00048 44.1 9.8 101 348-465 429-529 (591)
363 PF07676 PD40: WD40-like Beta 69.0 14 0.00031 28.4 5.4 30 368-397 7-38 (39)
364 PF06433 Me-amine-dh_H: Methyl 68.7 11 0.00023 43.7 6.5 57 173-229 269-330 (342)
365 PF12429 DUF3676: Protein of u 68.0 6.1 0.00013 41.7 4.0 109 871-987 28-138 (230)
366 PF10313 DUF2415: Uncharacteri 66.7 12 0.00026 30.8 4.6 29 434-462 3-34 (43)
367 PF02897 Peptidase_S9_N: Proly 66.6 25 0.00053 40.8 9.2 63 371-453 125-191 (414)
368 KOG1897 Damage-specific DNA bi 66.2 4.3E+02 0.0092 35.0 24.1 97 347-461 846-942 (1096)
369 KOG2444 WD40 repeat protein [G 65.7 14 0.00029 40.6 6.2 105 344-468 75-184 (238)
370 PF08596 Lgl_C: Lethal giant l 65.4 42 0.00092 39.6 10.8 83 361-462 78-174 (395)
371 KOG2041 WD40 repeat protein [G 64.8 7.2 0.00016 48.3 4.3 94 344-460 88-185 (1189)
372 PF12234 Rav1p_C: RAVE protein 62.6 73 0.0016 40.0 12.4 100 348-459 50-154 (631)
373 PF14870 PSII_BNR: Photosynthe 62.4 35 0.00076 39.0 9.0 69 370-459 145-213 (302)
374 COG3391 Uncharacterized conser 62.3 1E+02 0.0023 35.9 13.2 93 347-461 138-239 (381)
375 PF10647 Gmad1: Lipoprotein Lp 62.1 88 0.0019 34.4 11.9 77 371-463 67-146 (253)
376 cd00216 PQQ_DH Dehydrogenases 61.8 3.6E+02 0.0077 32.6 20.6 57 173-229 71-138 (488)
377 PF10313 DUF2415: Uncharacteri 59.7 20 0.00044 29.5 4.7 30 371-401 2-34 (43)
378 PF10647 Gmad1: Lipoprotein Lp 57.0 1.8E+02 0.0038 32.1 13.2 85 371-466 113-200 (253)
379 PF08728 CRT10: CRT10; InterP 57.0 2.6E+02 0.0057 35.8 15.8 74 371-461 165-246 (717)
380 PF14655 RAB3GAP2_N: Rab3 GTPa 56.7 66 0.0014 38.4 10.3 40 361-401 299-338 (415)
381 PF14783 BBS2_Mid: Ciliary BBS 54.9 2.1E+02 0.0045 28.3 11.6 87 343-456 19-109 (111)
382 PF14781 BBS2_N: Ciliary BBSom 54.0 66 0.0014 32.8 8.3 53 173-225 20-87 (136)
383 cd00216 PQQ_DH Dehydrogenases 53.7 4.8E+02 0.01 31.5 22.3 57 173-229 120-193 (488)
384 KOG1916 Nuclear protein, conta 49.8 13 0.00029 47.3 3.2 107 346-467 202-329 (1283)
385 PF14583 Pectate_lyase22: Olig 49.6 1.6E+02 0.0036 34.9 11.8 100 346-462 261-382 (386)
386 PF05787 DUF839: Bacterial pro 48.5 36 0.00079 41.7 6.7 76 374-449 440-519 (524)
387 PF14781 BBS2_N: Ciliary BBSom 47.7 2.6E+02 0.0056 28.7 11.3 58 171-228 71-134 (136)
388 PF01731 Arylesterase: Arylest 45.4 88 0.0019 29.4 7.2 50 348-400 35-84 (86)
389 KOG2395 Protein involved in va 44.9 82 0.0018 38.6 8.5 102 344-460 351-458 (644)
390 PF03022 MRJP: Major royal jel 44.8 3.9E+02 0.0084 30.2 13.6 109 349-462 34-160 (287)
391 PF12657 TFIIIC_delta: Transcr 43.7 1.8E+02 0.004 30.0 10.1 29 433-461 87-121 (173)
392 PF05694 SBP56: 56kDa selenium 43.2 3.1E+02 0.0068 33.2 12.8 108 346-466 219-347 (461)
393 COG3490 Uncharacterized protei 43.0 1.2E+02 0.0027 34.7 9.0 82 344-450 85-180 (366)
394 PF04841 Vps16_N: Vps16, N-ter 42.7 1.4E+02 0.003 35.4 10.2 39 420-461 71-109 (410)
395 PF06977 SdiA-regulated: SdiA- 42.1 2.7E+02 0.0059 31.0 11.7 83 364-466 16-99 (248)
396 PF12234 Rav1p_C: RAVE protein 40.4 2.6E+02 0.0055 35.4 12.1 80 364-462 24-105 (631)
397 PF04053 Coatomer_WDAD: Coatom 36.9 59 0.0013 39.1 5.9 44 173-217 126-171 (443)
398 TIGR02276 beta_rpt_yvtn 40-res 36.3 1.8E+02 0.0038 22.2 6.7 22 379-400 1-22 (42)
399 COG3490 Uncharacterized protei 35.3 3.3E+02 0.0072 31.4 10.8 48 347-397 138-186 (366)
400 smart00036 CNH Domain found in 34.7 5.6E+02 0.012 29.0 13.0 43 187-229 238-280 (302)
401 PF05096 Glu_cyclase_2: Glutam 34.1 2.1E+02 0.0045 32.4 9.1 56 173-228 110-166 (264)
402 COG3204 Uncharacterized protei 32.8 4.2E+02 0.0091 30.6 11.2 40 431-472 180-219 (316)
403 PF08596 Lgl_C: Lethal giant l 32.1 95 0.0021 36.8 6.5 95 347-460 233-334 (395)
404 KOG1898 Splicing factor 3b, su 31.9 1.4E+03 0.031 30.7 19.3 94 349-462 954-1049(1205)
405 KOG3621 WD40 repeat-containing 31.2 86 0.0019 39.4 6.0 80 368-467 32-111 (726)
406 PF06433 Me-amine-dh_H: Methyl 31.1 1.5E+02 0.0033 34.5 7.7 51 350-401 270-321 (342)
407 COG3211 PhoX Predicted phospha 31.1 1.1E+02 0.0023 38.0 6.7 63 374-449 504-571 (616)
408 KOG1008 Uncharacterized conser 30.1 82 0.0018 39.3 5.5 56 346-401 214-276 (783)
409 TIGR02604 Piru_Ver_Nterm putat 30.0 1.2E+02 0.0025 35.2 6.8 63 370-450 124-202 (367)
410 KOG2444 WD40 repeat protein [G 28.8 57 0.0012 36.0 3.6 57 344-401 119-178 (238)
411 PF03022 MRJP: Major royal jel 28.7 2.5E+02 0.0054 31.7 8.9 59 172-230 33-107 (287)
412 PF03088 Str_synth: Strictosid 28.6 2.1E+02 0.0045 27.1 6.9 35 421-458 48-82 (89)
413 PF07250 Glyoxal_oxid_N: Glyox 28.1 1.6E+02 0.0034 32.8 6.9 89 351-452 48-138 (243)
414 PRK13684 Ycf48-like protein; P 27.9 2.3E+02 0.005 32.5 8.6 66 370-456 173-238 (334)
415 COG2133 Glucose/sorbosone dehy 27.8 1.9E+02 0.0042 34.5 8.0 30 361-390 167-197 (399)
416 PF11715 Nup160: Nucleoporin N 27.5 2.9E+02 0.0063 33.6 9.9 71 74-190 157-257 (547)
417 smart00036 CNH Domain found in 27.5 4.7E+02 0.01 29.6 10.9 39 76-116 14-53 (302)
418 KOG4460 Nuclear pore complex, 26.8 2.2E+02 0.0048 35.1 8.2 84 371-462 105-199 (741)
419 KOG4649 PQQ (pyrrolo-quinoline 25.1 2.3E+02 0.0049 32.3 7.3 56 345-401 69-124 (354)
420 PRK10115 protease 2; Provision 24.7 2.9E+02 0.0064 35.1 9.4 62 370-452 127-192 (686)
421 PF10395 Utp8: Utp8 family; I 24.5 7.1E+02 0.015 31.8 12.2 49 171-219 249-305 (670)
422 PF12657 TFIIIC_delta: Transcr 24.4 7.9E+02 0.017 25.3 11.0 16 569-584 105-120 (173)
423 TIGR02608 delta_60_rpt delta-6 23.8 3.4E+02 0.0073 23.5 6.7 31 371-401 2-36 (55)
424 PRK10115 protease 2; Provision 23.7 6.6E+02 0.014 32.0 12.2 100 345-462 149-256 (686)
425 TIGR03606 non_repeat_PQQ dehyd 23.1 2.1E+02 0.0045 34.8 7.2 55 374-448 150-246 (454)
426 PF14761 HPS3_N: Hermansky-Pud 22.6 2.7E+02 0.0058 30.6 7.3 58 375-452 23-80 (215)
427 PF01731 Arylesterase: Arylest 22.5 2.2E+02 0.0047 26.8 5.8 28 435-462 57-85 (86)
428 KOG1008 Uncharacterized conser 22.5 33 0.00071 42.6 0.5 93 346-460 126-224 (783)
429 PF07569 Hira: TUP1-like enhan 22.2 2.4E+02 0.0053 30.6 7.0 52 346-399 29-94 (219)
430 PF12341 DUF3639: Protein of u 22.2 1.6E+02 0.0034 22.2 3.7 25 433-459 3-27 (27)
431 PF03088 Str_synth: Strictosid 21.3 2.3E+02 0.0049 26.8 5.6 45 344-389 32-76 (89)
432 PF13449 Phytase-like: Esteras 21.2 4.5E+02 0.0097 30.0 9.2 23 431-453 146-168 (326)
433 KOG1900 Nuclear pore complex, 21.0 4.9E+02 0.011 35.4 10.3 139 169-409 95-275 (1311)
434 PF07569 Hira: TUP1-like enhan 20.5 1.2E+02 0.0026 32.9 4.3 26 439-464 18-43 (219)
435 KOG2377 Uncharacterized conser 20.2 2.9E+02 0.0063 33.6 7.3 80 369-466 66-145 (657)
436 TIGR03074 PQQ_membr_DH membran 20.0 2E+03 0.043 28.4 19.1 58 172-229 269-354 (764)
No 1
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-60 Score=543.86 Aligned_cols=629 Identities=30% Similarity=0.364 Sum_probs=474.7
Q ss_pred CCchhhHhhcceeeeccCCcceeehhhhhcccccccccCCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEc
Q 001935 12 LPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDV 91 (994)
Q Consensus 12 ~~~s~~~~s~~~~~~s~~a~~~~~~~~s~~~s~a~~i~~~~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv 91 (994)
+|+|||+||.|+|+.|+|+.+++ .|++++.+.+.+.++|||+|++||+ .++..+.||+++|.+|||+||.
T Consensus 1 ~p~s~~~vs~c~k~~ssg~~~~~-------~s~~~~~ss~~~e~~dqvlw~~fD~---~~~~~~~Vlll~~~~gfqv~d~ 70 (788)
T KOG2109|consen 1 MPPSANSVSGCKKKNSSGHQRPQ-------QSHQQTQSSPLPEEEDQVLWIKFDP---KPEVLEEVLLLNREEGFQVVDE 70 (788)
T ss_pred CCcccchhccchhhcccccccHH-------HHHHhhcCCCChhhhccccccccCC---chhHHHHHHHHhhccCceEEee
Confidence 59999999999999998777665 4566777777899999999999994 2344688999999999999999
Q ss_pred cCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCC-cCCCCCCCCC
Q 001935 92 EDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGM-MDSQSGNCVN 170 (994)
Q Consensus 92 ~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~-~d~~~~~~~~ 170 (994)
++...+++..+.|++++.|++|++.|+.+...++|++++|++|+|..+. ++. .+..-++|. .+ .
T Consensus 71 ~Dsp~vh~~vs~~dd~~~f~sm~~~pl~sg~~~gf~ss~avpavv~~t~---S~p-----~I~~S~~Gse~d-------~ 135 (788)
T KOG2109|consen 71 TDSPTVHKEVSISDDLLDFSSMDKSPLSSGPDSGFESSDAVPAVVRTTT---SPP-----TIPPSQTGSEQD-------S 135 (788)
T ss_pred ccCCccceeeeecCCcceecccCCCCccCCCCCccccCCceeeeccccc---CCC-----cCCCCCCcceec-------c
Confidence 9999999999999999999999999999988899999999999875221 110 011113343 22 1
Q ss_pred CCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccce
Q 001935 171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM 250 (994)
Q Consensus 171 sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gpl 250 (994)
.+....++|+++..++|+|+|+ +|+|||+.+++..+.+..++.|.+ ..+++|+|+
T Consensus 136 t~an~~v~dl~S~~yah~l~fR-------------------qi~CfDa~tle~d~~~~~n~~p~l------~l~VGYGpl 190 (788)
T KOG2109|consen 136 TQANEMVVDLMSLDYAHALPFR-------------------QIHCFDAPTLEIDSMNTINTKPRL------LLSVGYGPL 190 (788)
T ss_pred cccccceeccccccchhccccc-------------------ccccccCcccCCchhhcccccccc------ceeeccccc
Confidence 2456778999999999999997 899999999999888888877632 245789999
Q ss_pred EEcccEEEEccCCeeeccCCccCCCcCCC-CCCCCCcCCCCCceEEEeehhhhhhhhcccc-------eeeccccccccC
Q 001935 251 AVGPRWLAYASNTLLLSNSGRLSPQNLTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLS-------KTLSKYCQELLP 322 (994)
Q Consensus 251 AlgpRwLAyas~~~~iwd~G~~s~qsltp-~~~S~stSp~~gsLVa~~A~dssk~la~Gi~-------ktlS~y~~~l~p 322 (994)
+++.||+||+++.+. .++.+.++. ..+++.+|+..+..+|.+|++++|++|.|+. +++++||++.++
T Consensus 191 aVg~rWaaya~~~a~-----~vss~~Vt~~~~VspttSs~~~~~va~~A~essk~lA~gl~nlgDkGy~~isglc~g~~~ 265 (788)
T KOG2109|consen 191 AVGRRWAAYAQTLAN-----QVSSHLVTMGMSVSPTTSSQITAEVAEWAQESSKELAGGLVNLGDKGYVLISGLCRGSYQ 265 (788)
T ss_pred cceeeeeeeccCcch-----hhhhccccccccccCCCCCchhHHHHHhhhhhhHHHhhhhcccccchHHHHHHHhhcccC
Confidence 999999999987432 112245566 7788899998888999999999999999965 688999999877
Q ss_pred CCCCCCccCCCccccccccccccCC-CCe--EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeC
Q 001935 323 DGSSSPVSPNSVWKVGRHAGADMDN-AGI--VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (994)
Q Consensus 323 ~~s~s~~s~s~~~k~g~~~~as~s~-dG~--V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (994)
.+...-..-....+.+....+++.. -|+ +.+-|+.+...+.+|++|++||++|||+++|.+|++++..|+.|++|++
T Consensus 266 ~g~gpglgg~~~~~vGrvg~vsaesV~g~~~vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRi 345 (788)
T KOG2109|consen 266 IGTGPGLGGFEEVLVGRVGPVSAESVLGNNLVIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRI 345 (788)
T ss_pred CCCCCCCCCcCceeccccccccceeecccceEEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEe
Confidence 7643222222222233332333332 455 8999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcccccccCCCCCC
Q 001935 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDP 479 (994)
Q Consensus 400 ~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~s~~~~~ 479 (994)
++.....+.+..++.|. .||++.+.|++|+|+-+.+|++.+|.+|+- |
T Consensus 346 met~~t~~~~~qs~~~s---------~ra~t~aviqdicfs~~s~~r~~gsc~Ge~-----------------------P 393 (788)
T KOG2109|consen 346 METVCTVNVSDQSLVVS---------PRANTAAVIQDICFSEVSTIRTAGSCEGEP-----------------------P 393 (788)
T ss_pred ccccccccccccccccc---------hhcchHHHHHHHhhhhhcceEeecccCCCC-----------------------c
Confidence 98654444343222222 489999999999999999999999966653 3
Q ss_pred ccCCccCCCcccCCCCCccCcccCCCCceeeeeeeeeeecCCccccccccccccccCccccccceeeeecccCccccccc
Q 001935 480 YLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQH 559 (994)
Q Consensus 480 ~~~p~~~lpw~~~ss~~~~q~~~p~p~~~~l~~vsrIk~~~~~w~~~v~~a~~~at~~~~~ps~~va~~F~~~~~~~~~~ 559 (994)
.+.+-..||||..+++...-+..+.+.+..|...++++-.+. | ++++-.+++-.|...-..+|+.......
T Consensus 394 ~ls~t~~lp~~A~~Sl~~gl~s~g~~aa~gla~~sag~~a~s----~---~asSv~s~s~~pd~ks~gv~~gsv~k~~-- 464 (788)
T KOG2109|consen 394 ALSLTCQLPAYADTSLDLGLQSSGGLAAEGLATSSAGYTAHS----Y---TASSVFSRSVKPDSKSVGVGSGSVTKAN-- 464 (788)
T ss_pred ccccccccchhhchhhhccccccCcccceeeeeccccccccc----c---ccceeeccccccchhhccceeeeccccC--
Confidence 455566789999999988777777777888888777765332 1 2223334445566666777777654321
Q ss_pred cccccCccccEEEEcCCc-cEEEEecccCCCCCCCCC-CCccccccccccCCCc-eeEeecccccceecccCCCcccccc
Q 001935 560 VNSRTNSLEHLLVYTPSG-YVVQHELLPSIGMGPSDD-GSRIRAASLMCLQEDD-LQVRVEPVQWWDVCRRSDWPEREEF 636 (994)
Q Consensus 560 ~~s~~~~~~~LlV~s~~G-~l~~Y~L~p~~g~e~~~~-~~~~~~~~~~~~~~~~-~~~~vep~~~W~v~r~~~~~e~~~~ 636 (994)
...+..+..|||+.|.| +++||-|.+.+++.-.+. ....+-.+ +...+++ .++.|+|.+.|+.|++-+|+|++++
T Consensus 465 -q~~~~~l~~llv~~psGd~vvqh~vahs~~gv~~Ef~~~~~l~lS-ad~~e~ef~~f~V~Ph~~wsslaav~hly~l~r 542 (788)
T KOG2109|consen 465 -QGVITVLNLLLVGEPSGDGVVQHYVAHSDPGVYIEFSPDQRLVLS-ADANENEFNIFLVMPHATWSSLAAVQHLYKLNR 542 (788)
T ss_pred -ccchhhhhheeeecCCCCceeEEEeeccCccceeeecccccceec-ccccccccceEEeecccccHHHhhhhhhhhccC
Confidence 13445678999999999 999999999988765443 22221111 3334567 9999999999999999999999997
Q ss_pred ccccccCCCCceeeeeccCCcccCCCcccccCCcceeccccccccCCCccccceeEeeeeeEeeccCCccccccceeEEE
Q 001935 637 ISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFF 716 (994)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ls~aEvq~~~~~~piW~~~~i~F~ 716 (994)
+.|.. +.+...... +..-.. ++. ....+.-+.+|-|+-+||+++|.. +|||+|.+ .||
T Consensus 543 --G~Tsa-----Kv~~~afs~-dsrw~A-------~~t-----~~~TthVfk~hpYgg~aeqrth~~-lp~vnk~s-rFh 600 (788)
T KOG2109|consen 543 --GSTSA-----KVVSTAFSE-DSRWLA-------ITT-----NHATTHVFKVHPYGGKAEQRTHGD-LPFVNKES-RFH 600 (788)
T ss_pred --CCccc-----eeeeeEeec-chhhhh-------hhh-----cCCceeeeeeccccccccceecCC-chhccchh-hhc
Confidence 44433 222111111 110000 100 113456778999999999999999 99999999 999
Q ss_pred EcCCccc------ccCCCcceEEeeeeceeEEEeccccccccccccccccccccc
Q 001935 717 KMDSPRA------NTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNR 765 (994)
Q Consensus 717 ~m~~~~~------~~~~~~e~eie~~~~~~~~~r~k~l~p~~~~~~~~~~~~~~~ 765 (994)
-|..+.. +...++|.||+++.++++|+|+||||||++ +...+.|
T Consensus 601 rsagl~~d~~~~~s~ggg~e~ei~~~~~~t~e~r~~dllPvy~-----~tS~rsr 650 (788)
T KOG2109|consen 601 RSAGLTDDADVTASIGGGKEREIADSCSYTKEHRIADLLPVYA-----KTSGRSR 650 (788)
T ss_pred cccCCCccccccccCCCCccceecccccccccccccccCCccc-----ccCcccc
Confidence 9998654 233467999999999999999999999999 5555556
No 2
>PF12490 BCAS3: Breast carcinoma amplified sequence 3 ; InterPro: IPR022175 This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length. The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer.
Probab=100.00 E-value=3.1e-53 Score=456.13 Aligned_cols=239 Identities=47% Similarity=0.747 Sum_probs=203.2
Q ss_pred CCceeeeeeeeeeecC-CccccccccccccccC-ccccccceeeeecccCccccccccccc-cCccccEEEEcCCccEEE
Q 001935 505 PPPVTLSVVSRIKYSS-FGWLNTVSNASASSMG-KVFVPSGAVAAVFHNSIAHSSQHVNSR-TNSLEHLLVYTPSGYVVQ 581 (994)
Q Consensus 505 p~~~~l~~vsrIk~~~-~~w~~~v~~a~~~at~-~~~~ps~~va~~F~~~~~~~~~~~~s~-~~~~~~LlV~s~~G~l~~ 581 (994)
|+|++|+||+|||+++ +||+|+++++++++++ +...+++++|+.||++..........+ .+.+++|||++|+|+|+|
T Consensus 1 P~Pv~l~~vsrIK~~~~~g~~~tv~~aassa~g~~~~~~sga~a~~f~~~~~~~~~~~~~~~~~~~~~LlV~spsG~Liq 80 (251)
T PF12490_consen 1 PPPVTLSVVSRIKQGNTLGWLNTVSNAASSATGGKPSSVSGAFASSFHNSKGSSSEPSDSSSSKAVESLLVFSPSGHLIQ 80 (251)
T ss_pred CCCEEechHHhhcCCccccccccccccccchhcCCcccceeEEccccccCCCCcccccccccccccceEEEECCCCcEEE
Confidence 6799999999999998 8999999999999998 889999999999999866555554444 788999999999999999
Q ss_pred EecccCCCCCCCCCCCccccccccccCCCceeEeecccccceecccCCCccccc-cccccccCCCCceeeeeccCCcccC
Q 001935 582 HELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREE-FISEATCDGHGAVEIFQNKSDCEDN 660 (994)
Q Consensus 582 Y~L~p~~g~e~~~~~~~~~~~~~~~~~~~~~~~~vep~~~W~v~r~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (994)
|+|+|+.+++...++++.+++....++|++|||+|||+|||||||+.+|+||++ .+.++...++....++.....+ .
T Consensus 81 y~L~p~~~~~~~~~~~~~~~~~~~~~~~~~l~l~vep~~~Wdl~R~~~w~e~~~d~~~~~~~~~~~~~~~~~~~~~~--~ 158 (251)
T PF12490_consen 81 YELRPSPGSDPTEGGSGNGPPSESQMDDTELRLVVEPVQQWDLCRRPNWPEREEDCVPPLPENNPLDSASKIDPSDC--R 158 (251)
T ss_pred EEEeeccccCcccccccccCccccccccCcceEEeeeccceeEeccccCCccchhccCCCCCCCHhhhhhhcccccc--c
Confidence 999999999988888888887777778899999999999999999999999999 5555555555543332232222 3
Q ss_pred CCcccccCCcceeccccccccCCCccccceeEeeeeeEeeccCC-ccccccceeEEEEcCCccc-----ccCCC--cceE
Q 001935 661 YGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGR-LPIWQSSKISFFKMDSPRA-----NTHAS--GEFE 732 (994)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ls~aEvq~~~~~-~piW~~~~i~F~~m~~~~~-----~~~~~--~e~e 732 (994)
++.+..+++...+.+. +++++|++||||||||||||+++ +||||||||+||+|.++.. ++..+ ||||
T Consensus 159 ~~~~~~~~~~~~~~~~-----~~~~~e~~~~wlS~vEi~th~~phrpLW~gpQf~F~~~~~~~~~~~~~s~~~~~~~e~E 233 (251)
T PF12490_consen 159 KGNSVNPSNDSYVSKE-----SDSPEERDHWWLSNVEIQTHSGPHRPLWMGPQFSFKTMSSPSSSELNISSSSGEAGEIE 233 (251)
T ss_pred ccCCcccccccccccc-----CCCcccccCcEEeeeeeEeccCCccccccCCcEEEEEecCCCCccccccccccccCcee
Confidence 3666777766555555 77899999999999999999999 8999999999999998763 34556 9999
Q ss_pred EeeeeceeEEEecccccc
Q 001935 733 IEKVSVHEVEIKRKELLP 750 (994)
Q Consensus 733 ie~~~~~~~~~r~k~l~p 750 (994)
|||||+|+||+|||||||
T Consensus 234 IE~~~~~~ve~r~k~l~p 251 (251)
T PF12490_consen 234 IEKIPTREVEIRRKDLLP 251 (251)
T ss_pred eccccccceeeeccccCC
Confidence 999999999999999998
No 3
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=7.1e-47 Score=410.83 Aligned_cols=325 Identities=27% Similarity=0.445 Sum_probs=276.9
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcE
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpL 132 (994)
++.+..+...+|+| +..+|.+|..+|+++|.+++.++ ..+...+.+..++|| |+++ |
T Consensus 2 ~~~~~ti~~~~~Nq-------d~~~lsvGs~~Gyk~~~~~~~~k---~~~~~~~~~~IvEmL-----------FSSS--L 58 (391)
T KOG2110|consen 2 NGKKPTINFIGFNQ-------DSTLLSVGSKDGYKIFSCSPFEK---CFSKDTEGVSIVEML-----------FSSS--L 58 (391)
T ss_pred CCCCcceeeeeecc-------ceeEEEccCCCceeEEecCchHH---hhcccCCCeEEEEee-----------cccc--e
Confidence 35677888999987 67899999999999999987443 555556789999999 8888 9
Q ss_pred EEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEeCCe
Q 001935 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQ 212 (994)
Q Consensus 133 LAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~~iLAVgl~~~ 212 (994)
||+|..+ -|++++++++|.+..||.+.|+++|++|++|+++|+|++.++
T Consensus 59 vaiV~~~-------------------------------qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~ 107 (391)
T KOG2110|consen 59 VAIVSIK-------------------------------QPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEES 107 (391)
T ss_pred eEEEecC-------------------------------CCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEccc
Confidence 9998531 148999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceeEEEeec-CCccccCCCccccccCccceEEcc----cEEEEccCCeeeccCCccCCCcCCCCCCCCCcC
Q 001935 213 IYCFDALTLENKFSVLTY-PVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (994)
Q Consensus 213 I~IwDa~Tle~l~tL~t~-p~p~~~~~g~~~vnv~~gplAlgp----RwLAyas~~~~iwd~G~~s~qsltp~~~S~stS 287 (994)
|||||+.+|+.+++|.+. |+| .+.+|+++ .||||+++
T Consensus 108 IyIydI~~MklLhTI~t~~~n~-------------~gl~AlS~n~~n~ylAyp~s------------------------- 149 (391)
T KOG2110|consen 108 IYIYDIKDMKLLHTIETTPPNP-------------KGLCALSPNNANCYLAYPGS------------------------- 149 (391)
T ss_pred EEEEecccceeehhhhccCCCc-------------cceEeeccCCCCceEEecCC-------------------------
Confidence 999999999999999986 553 46788876 47777652
Q ss_pred CCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 001935 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (994)
Q Consensus 288 p~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a 367 (994)
...|.|+|||+.+.+.+..|.+
T Consensus 150 ----------------------------------------------------------~t~GdV~l~d~~nl~~v~~I~a 171 (391)
T KOG2110|consen 150 ----------------------------------------------------------TTSGDVVLFDTINLQPVNTINA 171 (391)
T ss_pred ----------------------------------------------------------CCCceEEEEEcccceeeeEEEe
Confidence 1357899999999999999999
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 001935 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (994)
Q Consensus 368 HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LA 447 (994)
|.++|.||+|+|+|++|||||++|++||||.+.. | +++|+||||...+.|++|+|+||+++|+
T Consensus 172 H~~~lAalafs~~G~llATASeKGTVIRVf~v~~-------G----------~kl~eFRRG~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 172 HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-------G----------QKLYEFRRGTYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred cCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-------c----------cEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence 9999999999999999999999999999999942 5 6999999999988999999999999999
Q ss_pred EEeCCCeEEEEecCCCCCCcccccccCCCCCCccCCccCCCcccCCCCCccCcccCCCCceeeeeeeeeeecCCcccccc
Q 001935 448 IVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTV 527 (994)
Q Consensus 448 sgS~dGTVhIw~I~~~gg~~~~~~H~s~~~~~~~~p~~~lpw~~~ss~~~~q~~~p~p~~~~l~~vsrIk~~~~~w~~~v 527 (994)
++|+.+|||||+|+...-+ + + -.|. ...+|.+.+
T Consensus 235 ~sS~TeTVHiFKL~~~~~~----------------~---------------~---~~p~------------~~~~~~~~~ 268 (391)
T KOG2110|consen 235 ASSNTETVHIFKLEKVSNN----------------P---------------P---ESPT------------AGTSWFGKV 268 (391)
T ss_pred EecCCCeEEEEEecccccC----------------C---------------C---CCCC------------CCCcccchh
Confidence 9999999999999874210 0 0 0111 135788888
Q ss_pred ccccccccCccccccceeeeecccCcc--ccccc--------cccccCccccEEEEcCCccEEEEecccCCCCCCCCCC
Q 001935 528 SNASASSMGKVFVPSGAVAAVFHNSIA--HSSQH--------VNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDG 596 (994)
Q Consensus 528 ~~a~~~at~~~~~ps~~va~~F~~~~~--~~~~~--------~~s~~~~~~~LlV~s~~G~l~~Y~L~p~~g~e~~~~~ 596 (994)
++++.+ |+|++ |+.++++.|. +.+++ .+..+++.++++|++.|||+|.|+|+|++||||.++.
T Consensus 269 sk~~~s-----ylps~-V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik 341 (391)
T KOG2110|consen 269 SKAATS-----YLPSQ-VSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIK 341 (391)
T ss_pred hhhhhh-----hcchh-hhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEE
Confidence 887666 99999 9999999986 34444 4567899999999999999999999999999998864
No 4
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=6.1e-36 Score=321.03 Aligned_cols=316 Identities=25% Similarity=0.330 Sum_probs=250.3
Q ss_pred CcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeee--eccCCEEEEEEecCCCCCCCCCCccccCcEEE
Q 001935 57 DQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL 134 (994)
Q Consensus 57 d~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~ells--~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLA 134 (994)
-+.+-+.|+| +..++++|.++||+||++++ +.|..+ .+++.+..++|| |+.+ +||
T Consensus 6 ~~~lsvs~NQ-------D~ScFava~~~Gfriyn~~P---~ke~~~r~~~~~G~~~veML-----------fR~N--~la 62 (346)
T KOG2111|consen 6 PKTLSVSFNQ-------DHSCFAVATDTGFRIYNCDP---FKESASRQFIDGGFKIVEML-----------FRSN--YLA 62 (346)
T ss_pred CceeEEEEcc-------CCceEEEEecCceEEEecCc---hhhhhhhccccCchhhhhHh-----------hhhc--eEE
Confidence 3455588998 66899999999999999987 444333 345668899999 8887 999
Q ss_pred EEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEeCCeEE
Q 001935 135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIY 214 (994)
Q Consensus 135 vVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~~iLAVgl~~~I~ 214 (994)
+|.|++ +.-++|++|.|||.....++.++.|.++|.+|.+.++.|||.++++|+
T Consensus 63 LVGGg~--------------------------~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~ 116 (346)
T KOG2111|consen 63 LVGGGS--------------------------RPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIY 116 (346)
T ss_pred EecCCC--------------------------CCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEE
Confidence 986432 123468999999999999999999999999999999999999999999
Q ss_pred EEECC-CCceeEEEeecCCccccCCCccccccCccceEEcc----cEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCC
Q 001935 215 CFDAL-TLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (994)
Q Consensus 215 IwDa~-Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp----RwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~ 289 (994)
+|... +++.++.+.+..+| .|.|++.+ .+|||++.
T Consensus 117 VytF~~n~k~l~~~et~~NP-------------kGlC~~~~~~~k~~LafPg~--------------------------- 156 (346)
T KOG2111|consen 117 VYTFPDNPKLLHVIETRSNP-------------KGLCSLCPTSNKSLLAFPGF--------------------------- 156 (346)
T ss_pred EEEcCCChhheeeeecccCC-------------CceEeecCCCCceEEEcCCC---------------------------
Confidence 99987 78889999987775 35677664 34444431
Q ss_pred CCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE--EEEecc
Q 001935 290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI--ISQFKA 367 (994)
Q Consensus 290 ~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~--i~~~~a 367 (994)
..|.|+|-|+...+. ...+.|
T Consensus 157 ---------------------------------------------------------k~GqvQi~dL~~~~~~~p~~I~A 179 (346)
T KOG2111|consen 157 ---------------------------------------------------------KTGQVQIVDLASTKPNAPSIINA 179 (346)
T ss_pred ---------------------------------------------------------ccceEEEEEhhhcCcCCceEEEc
Confidence 346788888876554 478899
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 001935 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (994)
Q Consensus 368 HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LA 447 (994)
|.++|++|+++-+|++|||||.+||.|||||... | .++++||||...|.|++|+||||++|||
T Consensus 180 H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-------g----------~~l~E~RRG~d~A~iy~iaFSp~~s~La 242 (346)
T KOG2111|consen 180 HDSDIACVALNLQGTLVATASTKGTLIRIFDTED-------G----------TLLQELRRGVDRADIYCIAFSPNSSWLA 242 (346)
T ss_pred ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-------C----------cEeeeeecCCchheEEEEEeCCCccEEE
Confidence 9999999999999999999999999999999864 4 5899999999999999999999999999
Q ss_pred EEeCCCeEEEEecCCCCCCcccccccCCCCCCccCCc-cCCCcccCCCCCccCcccCCCCceeeeeeeeeeecCCccccc
Q 001935 448 IVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV-LSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNT 526 (994)
Q Consensus 448 sgS~dGTVhIw~I~~~gg~~~~~~H~s~~~~~~~~p~-~~lpw~~~ss~~~~q~~~p~p~~~~l~~vsrIk~~~~~w~~~ 526 (994)
++|++||+|||.|.... .+.+.|+ .+... ..||.|+.|.|+..|+.+|..+
T Consensus 243 vsSdKgTlHiF~l~~~~--~~~~~~S------Sl~~~~~~lpky~~S~wS~~~f~l~~~~-------------------- 294 (346)
T KOG2111|consen 243 VSSDKGTLHIFSLRDTE--NTEDESS------SLSFKRLVLPKYFSSEWSFAKFQLPQGT-------------------- 294 (346)
T ss_pred EEcCCCeEEEEEeecCC--CCccccc------cccccccccchhcccceeEEEEEccCCC--------------------
Confidence 99999999999997642 1222232 12222 3689999999999887765221
Q ss_pred cccccccccCccccccceeeeecccCccccccccccccCccccEEEEcCCccEEEEecccCCCCCCCC
Q 001935 527 VSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSD 594 (994)
Q Consensus 527 v~~a~~~at~~~~~ps~~va~~F~~~~~~~~~~~~s~~~~~~~LlV~s~~G~l~~Y~L~p~~g~e~~~ 594 (994)
.++++ |.+.. ..+++...||.-|.|.++|.+||+|..
T Consensus 295 ----------------~~~~~-fg~~~--------------nsvi~i~~Dgsy~k~~f~~~~~g~~~~ 331 (346)
T KOG2111|consen 295 ----------------QCIIA-FGSET--------------NTVIAICADGSYYKFKFDPKNGGESSR 331 (346)
T ss_pred ----------------cEEEE-ecCCC--------------CeEEEEEeCCcEEEEEeccccccchhh
Confidence 21232 32211 258889999999999999999999963
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.89 E-value=1.9e-22 Score=236.38 Aligned_cols=230 Identities=20% Similarity=0.254 Sum_probs=172.4
Q ss_pred CCCeEEEEEecCc-EEEEEccC--------C----------------------CcceEeeeeccCCEEEEEEecCCCCCC
Q 001935 73 VFKQVLLLGYQNG-FQVLDVED--------A----------------------SNFNELVSKRDGPVSFLQMQPFPVKDD 121 (994)
Q Consensus 73 ~~~~vL~lGy~~G-~qVWDv~~--------~----------------------g~v~ells~hdGpV~~v~~lP~p~~s~ 121 (994)
.+...||.|+.+. ++||.+.+ . +...+.+-+|.|||..+.|.|+-
T Consensus 388 ddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~---- 463 (707)
T KOG0263|consen 388 DDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDR---- 463 (707)
T ss_pred CCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccc----
Confidence 3567999999876 89999973 1 11234466789999999988764
Q ss_pred CCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEe
Q 001935 122 GCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRC 200 (994)
Q Consensus 122 ~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~ 200 (994)
.+|+.++. +.+||+|++.+..++-.++.+ .+|++|+|
T Consensus 464 ---------rfLlScSE---------------------------------D~svRLWsl~t~s~~V~y~GH~~PVwdV~F 501 (707)
T KOG0263|consen 464 ---------RFLLSCSE---------------------------------DSSVRLWSLDTWSCLVIYKGHLAPVWDVQF 501 (707)
T ss_pred ---------cceeeccC---------------------------------CcceeeeecccceeEEEecCCCcceeeEEe
Confidence 46665332 368999999999999988866 59999999
Q ss_pred cCC--eEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcC
Q 001935 201 SPR--IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNL 277 (994)
Q Consensus 201 S~~--iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsl 277 (994)
+|+ +.|.+. |.+.++|.....+.++.+.+|-+ + .+.++ |.+|
T Consensus 502 ~P~GyYFatas~D~tArLWs~d~~~PlRifaghls---------D----V~cv~-------FHPN--------------- 546 (707)
T KOG0263|consen 502 APRGYYFATASHDQTARLWSTDHNKPLRIFAGHLS---------D----VDCVS-------FHPN--------------- 546 (707)
T ss_pred cCCceEEEecCCCceeeeeecccCCchhhhccccc---------c----cceEE-------ECCc---------------
Confidence 994 555544 55689998665444444333322 0 01112 2221
Q ss_pred CCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECC
Q 001935 278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV 357 (994)
Q Consensus 278 tp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~ 357 (994)
..+ +++++.|.+||+||..
T Consensus 547 ---------------------------------------------------------s~Y----~aTGSsD~tVRlWDv~ 565 (707)
T KOG0263|consen 547 ---------------------------------------------------------SNY----VATGSSDRTVRLWDVS 565 (707)
T ss_pred ---------------------------------------------------------ccc----cccCCCCceEEEEEcC
Confidence 111 2356789999999999
Q ss_pred CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEE
Q 001935 358 TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDI 437 (994)
Q Consensus 358 s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sI 437 (994)
++..+..|.+|+.||.+|+|||+|++||+|+++|. |+|||+.. | ..+.+| +|+ .+.|++|
T Consensus 566 ~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iWDl~~-------~----------~~v~~l-~~H-t~ti~Sl 625 (707)
T KOG0263|consen 566 TGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIWDLAN-------G----------SLVKQL-KGH-TGTIYSL 625 (707)
T ss_pred CCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEEEcCC-------C----------cchhhh-hcc-cCceeEE
Confidence 99999999999999999999999999999999765 99999953 3 234444 676 5689999
Q ss_pred EEccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 438 CFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 438 aFSpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
.||.||..||+++.|.+|++|++...-
T Consensus 626 sFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 626 SFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EEecCCCEEEecCCCCeEEEEEchhhc
Confidence 999999999999999999999987643
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.8e-22 Score=218.51 Aligned_cols=308 Identities=15% Similarity=0.156 Sum_probs=213.9
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 51 ~~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~-G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
..++|-+.|+.+.|- +++..|++|..+ .+|+||++ +..-..++.+|..+|-+|.+.|++.
T Consensus 110 S~~GH~e~Vl~~~fs-------p~g~~l~tGsGD~TvR~WD~~-TeTp~~t~KgH~~WVlcvawsPDgk----------- 170 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFS-------PTGSRLVTGSGDTTVRLWDLD-TETPLFTCKGHKNWVLCVAWSPDGK----------- 170 (480)
T ss_pred ccCCCCCcEEEEEec-------CCCceEEecCCCceEEeeccC-CCCcceeecCCccEEEEEEECCCcc-----------
Confidence 467899999999995 466788888654 69999995 4555678889999999999999872
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeE-EEEEeCC-CcEEEEEecC-----
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-EHVLRFR-SSVCMVRCSP----- 202 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~-V~tL~f~-S~V~sV~~S~----- 202 (994)
.||. |. .+++|+|||-++|++ ...|+-| -.|.++++.|
T Consensus 171 --~iAS--G~-------------------------------~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p 215 (480)
T KOG0271|consen 171 --KIAS--GS-------------------------------KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP 215 (480)
T ss_pred --hhhc--cc-------------------------------cCCeEEEecCCCCCcccccccCcccceeEEeecccccCC
Confidence 3452 10 247899999999875 4566554 5899999976
Q ss_pred --CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccC---CeeeccC--Ccc--
Q 001935 203 --RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN---TLLLSNS--GRL-- 272 (994)
Q Consensus 203 --~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~---~~~iwd~--G~~-- 272 (994)
++||.+. |+.|+|||+....+++++..|..+ ...+-+|..=|-|+++ ++.+|+. |.+
T Consensus 216 ~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~-------------VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r 282 (480)
T KOG0271|consen 216 PCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS-------------VTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCR 282 (480)
T ss_pred CccceecccCCCCEEEEEccCceEEEEeccCccc-------------eEEEEEcCCceEEecCCCceEEEEEccchhHHH
Confidence 5777755 568999999999999999988774 2345555533334443 4667863 222
Q ss_pred CCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccc---------------eeeccccccccCCCCCCCccCCCcccc
Q 001935 273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS---------------KTLSKYCQELLPDGSSSPVSPNSVWKV 337 (994)
Q Consensus 273 s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~---------------ktlS~y~~~l~p~~s~s~~s~s~~~k~ 337 (994)
..+.+..++..++-|. .|+ |-.|.. +.+.+|-.- ..+.
T Consensus 283 ~lkGHahwvN~lalsT-------dy~------LRtgaf~~t~~~~~~~se~~~~Al~rY~~~-~~~~------------- 335 (480)
T KOG0271|consen 283 ELKGHAHWVNHLALST-------DYV------LRTGAFDHTGRKPKSFSEEQKKALERYEAV-LKDS------------- 335 (480)
T ss_pred hhcccchheeeeeccc-------hhh------hhccccccccccCCChHHHHHHHHHHHHHh-hccC-------------
Confidence 0111111111111100 000 000100 122233110 0000
Q ss_pred ccccccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccC
Q 001935 338 GRHAGADMDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 416 (994)
Q Consensus 338 g~~~~as~s~dG~V~VwDl~s-~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~ 416 (994)
.-.+.+++.|+++.+|+-.. .+.+..+.+|..-|+.+.|||||+++|+||. +..||+|+-.. |
T Consensus 336 -~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF-DkSVkLW~g~t-------G------- 399 (480)
T KOG0271|consen 336 -GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF-DKSVKLWDGRT-------G------- 399 (480)
T ss_pred -cceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec-ccceeeeeCCC-------c-------
Confidence 01245788999999999764 4588899999999999999999999999999 56699999753 4
Q ss_pred CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccccccc
Q 001935 417 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (994)
Q Consensus 417 ~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~ 473 (994)
+.+-.| ||| -+.|+.|+||.|++.|++||.|.|++||++...+-...+-.|.
T Consensus 400 ---k~lasf-RGH-v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~ 451 (480)
T KOG0271|consen 400 ---KFLASF-RGH-VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHA 451 (480)
T ss_pred ---chhhhh-hhc-cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCC
Confidence 466667 675 4679999999999999999999999999998876665555564
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.88 E-value=3.4e-21 Score=202.30 Aligned_cols=266 Identities=18% Similarity=0.227 Sum_probs=182.9
Q ss_pred EEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCC-CCC-CC-----ccccC--cEEEEEecCCCCCCCCC
Q 001935 77 VLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD-DGC-EG-----FRKLH--PFLLVVAGEDTNTLAPG 147 (994)
Q Consensus 77 vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s-~~~-D~-----F~~sr--pLLAvVsgd~~~~~~~~ 147 (994)
++.+||+..||+|.. .+|.|..++...|+.|+.+++.|+...- .++ .. .++.. |+.-+.+
T Consensus 13 LvsA~YDhTIRfWqa-~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~---------- 81 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQA-LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEG---------- 81 (311)
T ss_pred EEeccCcceeeeeeh-hcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEec----------
Confidence 445678899999998 5799999999999999999999986431 111 11 11111 2211110
Q ss_pred CCCCCcccc---ccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCC--eEEEEe-CCeEEEEECCCC
Q 001935 148 QNRSHLGGV---RDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR--IVAVGL-ATQIYCFDALTL 221 (994)
Q Consensus 148 q~~~~~~~v---r~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~~--iLAVgl-~~~I~IwDa~Tl 221 (994)
+ ...+.+| .+|+|....+. +++|||||++.-++-+.++|.++|..|-.+|+ -|+++. .+.|++||+.+-
T Consensus 82 h-~kNVtaVgF~~dgrWMyTgse----Dgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 82 H-TKNVTAVGFQCDGRWMYTGSE----DGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred c-CCceEEEEEeecCeEEEecCC----CceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 1 0222233 78888765443 79999999999999999999999999999983 566655 457999998865
Q ss_pred ceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhh
Q 001935 222 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH 301 (994)
Q Consensus 222 e~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~ds 301 (994)
.+-..+ .|+ .......+++. |++..+
T Consensus 157 ~c~~~l----iPe--------~~~~i~sl~v~----------------------------------~dgsml-------- 182 (311)
T KOG0315|consen 157 SCTHEL----IPE--------DDTSIQSLTVM----------------------------------PDGSML-------- 182 (311)
T ss_pred cccccc----CCC--------CCcceeeEEEc----------------------------------CCCcEE--------
Confidence 432222 111 00000001110 111111
Q ss_pred hhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC------cEEEEeccCCCCeEEE
Q 001935 302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------AIISQFKAHTSPISAL 375 (994)
Q Consensus 302 sk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~------~~i~~~~aHtspIsaL 375 (994)
+.+.+.|...+|++-+. ..+.+|++|..-|..+
T Consensus 183 -----------------------------------------~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C 221 (311)
T KOG0315|consen 183 -----------------------------------------AAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRC 221 (311)
T ss_pred -----------------------------------------EEecCCccEEEEEccCCCccccceEhhheecccceEEEE
Confidence 12356788999998764 4678899999999999
Q ss_pred EECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeE
Q 001935 376 CFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTC 455 (994)
Q Consensus 376 aFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTV 455 (994)
.||||+++|||+|. +++++||++...+ ..-..+ .| ++..+|+++||.||+||++++.|+++
T Consensus 222 ~lSPd~k~lat~ss-dktv~iwn~~~~~----------------kle~~l-~g-h~rWvWdc~FS~dg~YlvTassd~~~ 282 (311)
T KOG0315|consen 222 LLSPDVKYLATCSS-DKTVKIWNTDDFF----------------KLELVL-TG-HQRWVWDCAFSADGEYLVTASSDHTA 282 (311)
T ss_pred EECCCCcEEEeecC-CceEEEEecCCce----------------eeEEEe-ec-CCceEEeeeeccCccEEEecCCCCce
Confidence 99999999999999 5669999985310 111122 23 34589999999999999999999999
Q ss_pred EEEecCCCCCCcccccc
Q 001935 456 HVFVLSPFGGDSGFQTL 472 (994)
Q Consensus 456 hIw~I~~~gg~~~~~~H 472 (994)
|+|++...+.......|
T Consensus 283 rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 283 RLWDLSAGKEVRQYQGH 299 (311)
T ss_pred eecccccCceeeecCCc
Confidence 99999887655555555
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=7.6e-21 Score=208.42 Aligned_cols=291 Identities=15% Similarity=0.152 Sum_probs=200.2
Q ss_pred CCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCC
Q 001935 72 SVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR 150 (994)
Q Consensus 72 ~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~ 150 (994)
+|++..|+.|..+| |++||-...+..-..|.+|..+|..+++.|--... ..| +||..+
T Consensus 166 sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p-------~~r-~las~s------------- 224 (480)
T KOG0271|consen 166 SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP-------PCR-RLASSS------------- 224 (480)
T ss_pred CCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCC-------Ccc-ceeccc-------------
Confidence 47899999999887 99999876667778999999999999999854321 222 455321
Q ss_pred CCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC-CeEEEEe-CCeEEEEECCCCceeEEE
Q 001935 151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-RIVAVGL-ATQIYCFDALTLENKFSV 227 (994)
Q Consensus 151 ~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~-~iLAVgl-~~~I~IwDa~Tle~l~tL 227 (994)
.++.|+|||++.++++..+..| .+|.+|++-. .+|..+. |.+|++|++.++++..++
T Consensus 225 --------------------kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~l 284 (480)
T KOG0271|consen 225 --------------------KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCREL 284 (480)
T ss_pred --------------------CCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhh
Confidence 2478999999999999999765 5899999986 6777765 557999999999998888
Q ss_pred eecCCccccCCCccccccCccceEEcccE----EEEccCCeeeccCCccCCCcC-----------C---C-CCCCCCcCC
Q 001935 228 LTYPVPQLAGQGAVGINVGYGPMAVGPRW----LAYASNTLLLSNSGRLSPQNL-----------T---P-SGVSPSTSP 288 (994)
Q Consensus 228 ~t~p~p~~~~~g~~~vnv~~gplAlgpRw----LAyas~~~~iwd~G~~s~qsl-----------t---p-~~~S~stSp 288 (994)
.+|..+ .|.+|++..| =||-.. |+. +.++ . . .+-.+.+-.
T Consensus 285 kGHahw-------------vN~lalsTdy~LRtgaf~~t-------~~~-~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 285 KGHAHW-------------VNHLALSTDYVLRTGAFDHT-------GRK-PKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cccchh-------------eeeeeccchhhhhccccccc-------ccc-CCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 887663 3556766422 122111 000 0000 0 0 000000001
Q ss_pred CCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 001935 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH 368 (994)
Q Consensus 289 ~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aH 368 (994)
++..+...--.+..+-+ ..++++-.. +...+++|+.++. ++++.|..|++||..+|+-++.|++|
T Consensus 344 Dd~tlflW~p~~~kkpi-----~rmtgHq~l------Vn~V~fSPd~r~I----ASaSFDkSVkLW~g~tGk~lasfRGH 408 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPI-----TRMTGHQAL------VNHVSFSPDGRYI----ASASFDKSVKLWDGRTGKFLASFRGH 408 (480)
T ss_pred CCceEEEecccccccch-----hhhhchhhh------eeeEEECCCccEE----EEeecccceeeeeCCCcchhhhhhhc
Confidence 11111111000000000 112222111 1234566777654 58899999999999999999999999
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 001935 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (994)
Q Consensus 369 tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs 448 (994)
-.+|..++++.|.+||+++|. +++++||++... ...+.| -|+ ...|+++.|||||+.+|+
T Consensus 409 v~~VYqvawsaDsRLlVS~Sk-DsTLKvw~V~tk-----------------Kl~~DL-pGh-~DEVf~vDwspDG~rV~s 468 (480)
T KOG0271|consen 409 VAAVYQVAWSADSRLLVSGSK-DSTLKVWDVRTK-----------------KLKQDL-PGH-ADEVFAVDWSPDGQRVAS 468 (480)
T ss_pred cceeEEEEeccCccEEEEcCC-CceEEEEEeeee-----------------eecccC-CCC-CceEEEEEecCCCceeec
Confidence 999999999999999999999 566999999641 233444 453 468999999999999999
Q ss_pred EeCCCeEEEEe
Q 001935 449 VSSKGTCHVFV 459 (994)
Q Consensus 449 gS~dGTVhIw~ 459 (994)
|+.|..++||.
T Consensus 469 ggkdkv~~lw~ 479 (480)
T KOG0271|consen 469 GGKDKVLRLWR 479 (480)
T ss_pred CCCceEEEeec
Confidence 99999999995
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=5.2e-21 Score=211.98 Aligned_cols=256 Identities=16% Similarity=0.173 Sum_probs=198.9
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
-++.-.|..+.|-. +...|++|..+| ++||+++. .+...+|-+|.+.|.++.|-|.- +.-
T Consensus 172 ~gd~rPis~~~fS~-------ds~~laT~swsG~~kvW~~~~-~~~~~~l~gH~~~v~~~~fhP~~-----------~~~ 232 (459)
T KOG0272|consen 172 VGDTRPISGCSFSR-------DSKHLATGSWSGLVKVWSVPQ-CNLLQTLRGHTSRVGAAVFHPVD-----------SDL 232 (459)
T ss_pred ccCCCcceeeEeec-------CCCeEEEeecCCceeEeecCC-cceeEEEeccccceeeEEEccCC-----------Ccc
Confidence 34556677777764 667899999888 79999964 57888999999999999999852 111
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEE-
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV- 207 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--~iLAV- 207 (994)
-||.++ .+++|++|++.+.+.+..|+.| ..|-.|+|+| ++|+.
T Consensus 233 ~lat~s---------------------------------~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Ta 279 (459)
T KOG0272|consen 233 NLATAS---------------------------------ADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTA 279 (459)
T ss_pred ceeeec---------------------------------cCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeec
Confidence 245432 3578999999998999999866 5899999998 67776
Q ss_pred EeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcC
Q 001935 208 GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (994)
Q Consensus 208 gl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stS 287 (994)
+.|.+-++||+.|.+.+.-..+|... .-. |||-.
T Consensus 280 sfD~tWRlWD~~tk~ElL~QEGHs~~-------------v~~-------iaf~~-------------------------- 313 (459)
T KOG0272|consen 280 SFDSTWRLWDLETKSELLLQEGHSKG-------------VFS-------IAFQP-------------------------- 313 (459)
T ss_pred ccccchhhcccccchhhHhhcccccc-------------cce-------eEecC--------------------------
Confidence 55678999999998877655565441 111 22221
Q ss_pred CCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 001935 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (994)
Q Consensus 288 p~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a 367 (994)
+ |+|+ ++++.|..-+|||+.+++++..|.+
T Consensus 314 -D-GSL~------------------------------------------------~tGGlD~~~RvWDlRtgr~im~L~g 343 (459)
T KOG0272|consen 314 -D-GSLA------------------------------------------------ATGGLDSLGRVWDLRTGRCIMFLAG 343 (459)
T ss_pred -C-Ccee------------------------------------------------eccCccchhheeecccCcEEEEecc
Confidence 1 2332 2456788889999999999999999
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEE
Q 001935 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWI 446 (994)
Q Consensus 368 HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSp-Dg~~L 446 (994)
|..+|..++|||+|-.|||+|.|++ +||||+.-. ..+|..- + |...|..+.|+| -|++|
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r-----------------~~ly~ip-A-H~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMR-----------------SELYTIP-A-HSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred cccceeeEeECCCceEEeecCCCCc-EEEeeeccc-----------------ccceecc-c-ccchhhheEecccCCeEE
Confidence 9999999999999999999999766 999999631 3566653 3 345799999999 78999
Q ss_pred EEEeCCCeEEEEecCCCCCCcccccccCCC
Q 001935 447 AIVSSKGTCHVFVLSPFGGDSGFQTLSSQG 476 (994)
Q Consensus 447 AsgS~dGTVhIw~I~~~gg~~~~~~H~s~~ 476 (994)
+++|-|+|++||.-..+.....+..|..++
T Consensus 404 ~TasyD~t~kiWs~~~~~~~ksLaGHe~kV 433 (459)
T KOG0272|consen 404 VTASYDNTVKIWSTRTWSPLKSLAGHEGKV 433 (459)
T ss_pred EEcccCcceeeecCCCcccchhhcCCccce
Confidence 999999999999988888888888887554
No 10
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.86 E-value=7.3e-19 Score=179.10 Aligned_cols=276 Identities=21% Similarity=0.264 Sum_probs=193.7
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~-G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
..+|++.|..+.|.. ++++|++|..+ .+++|++.. +.....+..|..++..+.+.|+.
T Consensus 5 ~~~h~~~i~~~~~~~-------~~~~l~~~~~~g~i~i~~~~~-~~~~~~~~~~~~~i~~~~~~~~~------------- 63 (289)
T cd00200 5 LKGHTGGVTCVAFSP-------DGKLLATGSGDGTIKVWDLET-GELLRTLKGHTGPVRDVAASADG------------- 63 (289)
T ss_pred hcccCCCEEEEEEcC-------CCCEEEEeecCcEEEEEEeeC-CCcEEEEecCCcceeEEEECCCC-------------
Confidence 346889999999974 45677777755 499999964 55666777788889888888653
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEE
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV 207 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--~iLAV 207 (994)
.+|++++ .++.|++||+.+++.+..+..+ ..|.++.+++ +++++
T Consensus 64 ~~l~~~~---------------------------------~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 110 (289)
T cd00200 64 TYLASGS---------------------------------SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSS 110 (289)
T ss_pred CEEEEEc---------------------------------CCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEE
Confidence 2555422 1368999999998888888654 4899999988 67777
Q ss_pred Ee-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEcc--CCeeeccCCccCCCcCCCCCC
Q 001935 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS--NTLLLSNSGRLSPQNLTPSGV 282 (994)
Q Consensus 208 gl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas--~~~~iwd~G~~s~qsltp~~~ 282 (994)
+. ++.|++||+.+.+....+..+..+ ...+++.+ ++|+... ..+.+|+....
T Consensus 111 ~~~~~~i~~~~~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---------- 167 (289)
T cd00200 111 SSRDKTIKVWDVETGKCLTTLRGHTDW-------------VNSVAFSPDGTFVASSSQDGTIKLWDLRTG---------- 167 (289)
T ss_pred ecCCCeEEEEECCCcEEEEEeccCCCc-------------EEEEEEcCcCCEEEEEcCCCcEEEEEcccc----------
Confidence 77 789999999988877777644331 23456665 5666554 34566763100
Q ss_pred CCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE
Q 001935 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (994)
Q Consensus 283 S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i 362 (994)
..+. .+..+ ......+.+++..+ .++.+..+|.|++||+..++.+
T Consensus 168 ---------~~~~----------------~~~~~------~~~i~~~~~~~~~~----~l~~~~~~~~i~i~d~~~~~~~ 212 (289)
T cd00200 168 ---------KCVA----------------TLTGH------TGEVNSVAFSPDGE----KLLSSSSDGTIKLWDLSTGKCL 212 (289)
T ss_pred ---------ccce----------------eEecC------ccccceEEECCCcC----EEEEecCCCcEEEEECCCCcee
Confidence 0000 00000 00001111122221 1234456999999999999999
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 001935 363 SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (994)
Q Consensus 363 ~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpD 442 (994)
..+..|..+|.+++|+|++.++++++.+|+ |++|++.. + ..+..+. + +...|.+++|+|+
T Consensus 213 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~-------~----------~~~~~~~-~-~~~~i~~~~~~~~ 272 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRT-------G----------ECVQTLS-G-HTNSVTSLAWSPD 272 (289)
T ss_pred cchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCC-------c----------eeEEEcc-c-cCCcEEEEEECCC
Confidence 999999999999999999999999987666 99999853 2 3455554 3 3457999999999
Q ss_pred CCEEEEEeCCCeEEEEe
Q 001935 443 SQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 443 g~~LAsgS~dGTVhIw~ 459 (994)
+++|++++.||+++||+
T Consensus 273 ~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 273 GKRLASGSADGTIRIWD 289 (289)
T ss_pred CCEEEEecCCCeEEecC
Confidence 99999999999999995
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=1.4e-20 Score=208.58 Aligned_cols=240 Identities=19% Similarity=0.145 Sum_probs=185.7
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~-G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
+.+|+++|..+.|.-.. ....|++|..+ .+++|+++. .....-|.+|...|..|+|-|++
T Consensus 213 l~gH~~~v~~~~fhP~~-----~~~~lat~s~Dgtvklw~~~~-e~~l~~l~gH~~RVs~VafHPsG------------- 273 (459)
T KOG0272|consen 213 LRGHTSRVGAAVFHPVD-----SDLNLATASADGTVKLWKLSQ-ETPLQDLEGHLARVSRVAFHPSG------------- 273 (459)
T ss_pred EeccccceeeEEEccCC-----CccceeeeccCCceeeeccCC-CcchhhhhcchhhheeeeecCCC-------------
Confidence 57899999999997422 23456666555 599999954 44556677888899999988776
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecCC--eEEE
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSPR--IVAV 207 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S-~V~sV~~S~~--iLAV 207 (994)
.+|+..+ .+.+-|+||+.+++.+...+.|+ .|++|+|+++ +++.
T Consensus 274 ~~L~Tas---------------------------------fD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~t 320 (459)
T KOG0272|consen 274 KFLGTAS---------------------------------FDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAAT 320 (459)
T ss_pred ceeeecc---------------------------------cccchhhcccccchhhHhhcccccccceeEecCCCceeec
Confidence 3566421 35789999999999888777665 8999999884 5555
Q ss_pred -EeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCc
Q 001935 208 -GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (994)
Q Consensus 208 -gl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~st 286 (994)
|+|..-+|||+++++++..|..|..+. -.++| .
T Consensus 321 GGlD~~~RvWDlRtgr~im~L~gH~k~I-------------~~V~f-------s-------------------------- 354 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFLAGHIKEI-------------LSVAF-------S-------------------------- 354 (459)
T ss_pred cCccchhheeecccCcEEEEecccccce-------------eeEeE-------C--------------------------
Confidence 445668999999999998888775530 01111 1
Q ss_pred CCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 001935 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (994)
Q Consensus 287 Sp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~ 366 (994)
| +++.+++++.|++++|||+...+.+.+|.
T Consensus 355 -P-------------------------------------------------NGy~lATgs~Dnt~kVWDLR~r~~ly~ip 384 (459)
T KOG0272|consen 355 -P-------------------------------------------------NGYHLATGSSDNTCKVWDLRMRSELYTIP 384 (459)
T ss_pred -C-------------------------------------------------CceEEeecCCCCcEEEeeecccccceecc
Confidence 1 11234567889999999999999999999
Q ss_pred cCCCCeEEEEECC-CCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 001935 367 AHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (994)
Q Consensus 367 aHtspIsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~ 445 (994)
||++-|+.++|+| .|.+|||||.|++ ++||.... + .++..| .||. .+|.++..|+||++
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~-------~----------~~~ksL-aGHe-~kV~s~Dis~d~~~ 444 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRT-------W----------SPLKSL-AGHE-GKVISLDISPDSQA 444 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCcc-eeeecCCC-------c----------ccchhh-cCCc-cceEEEEeccCCce
Confidence 9999999999999 8999999999665 99999642 2 455566 5754 67999999999999
Q ss_pred EEEEeCCCeEEEEe
Q 001935 446 IAIVSSKGTCHVFV 459 (994)
Q Consensus 446 LAsgS~dGTVhIw~ 459 (994)
|++++.|.|+++|.
T Consensus 445 i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 445 IATSSFDRTIKLWR 458 (459)
T ss_pred EEEeccCceeeecc
Confidence 99999999999995
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.83 E-value=1e-18 Score=195.78 Aligned_cols=280 Identities=19% Similarity=0.263 Sum_probs=204.0
Q ss_pred CcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEE
Q 001935 57 DQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLV 135 (994)
Q Consensus 57 d~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAv 135 (994)
-+|+-..++. ++.+|++|..+| ++||+. .|++..+|..|-|||..|++...+ .+|+.
T Consensus 236 kdVT~L~Wn~-------~G~~LatG~~~G~~riw~~--~G~l~~tl~~HkgPI~slKWnk~G-------------~yilS 293 (524)
T KOG0273|consen 236 KDVTSLDWNN-------DGTLLATGSEDGEARIWNK--DGNLISTLGQHKGPIFSLKWNKKG-------------TYILS 293 (524)
T ss_pred CCcceEEecC-------CCCeEEEeecCcEEEEEec--CchhhhhhhccCCceEEEEEcCCC-------------CEEEe
Confidence 4466555542 578999999999 699997 578889999999999999977443 46663
Q ss_pred EecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcE-EEEEecC--CeEEEEeCCe
Q 001935 136 VAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSV-CMVRCSP--RIVAVGLATQ 212 (994)
Q Consensus 136 Vsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V-~sV~~S~--~iLAVgl~~~ 212 (994)
++ .++++.+||..+|++-..+.|++.+ ++|.+-. .+...+.++.
T Consensus 294 --~~-------------------------------vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~ 340 (524)
T KOG0273|consen 294 --GG-------------------------------VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGC 340 (524)
T ss_pred --cc-------------------------------CCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCce
Confidence 11 3578999999999999999999876 8888855 3444566778
Q ss_pred EEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCC
Q 001935 213 IYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSP 288 (994)
Q Consensus 213 I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp 288 (994)
|+++.+..-.+..++..|..+ .+.+-+.+ ..||.+++ ++.||+.|...-++
T Consensus 341 i~V~kv~~~~P~~t~~GH~g~-------------V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~------------ 395 (524)
T KOG0273|consen 341 IHVCKVGEDRPVKTFIGHHGE-------------VNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH------------ 395 (524)
T ss_pred EEEEEecCCCcceeeecccCc-------------eEEEEECCCCceEEEecCCCeeEeeecCCCcchh------------
Confidence 999998888888888887663 24566665 68888775 57899854321000
Q ss_pred CCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 001935 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH 368 (994)
Q Consensus 289 ~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aH 368 (994)
.| .+..|.+ |...-.|.+.. ..++. -...++++..|++|++||+..+.+++.|..|
T Consensus 396 ---~l-------------~~Hskei--~t~~wsp~g~v---~~n~~---~~~~l~sas~dstV~lwdv~~gv~i~~f~kH 451 (524)
T KOG0273|consen 396 ---DL-------------QAHSKEI--YTIKWSPTGPV---TSNPN---MNLMLASASFDSTVKLWDVESGVPIHTLMKH 451 (524)
T ss_pred ---hh-------------hhhccce--eeEeecCCCCc---cCCCc---CCceEEEeecCCeEEEEEccCCceeEeeccC
Confidence 00 0000000 11011122211 11110 1124567889999999999999999999999
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 001935 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (994)
Q Consensus 369 tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs 448 (994)
+.||.+|+|+|+|++||+++.+|. |+||+++. | .+|+-.+| +..|..++|+-+|.+|++
T Consensus 452 ~~pVysvafS~~g~ylAsGs~dg~-V~iws~~~-------~-----------~l~~s~~~--~~~Ifel~Wn~~G~kl~~ 510 (524)
T KOG0273|consen 452 QEPVYSVAFSPNGRYLASGSLDGC-VHIWSTKT-------G-----------KLVKSYQG--TGGIFELCWNAAGDKLGA 510 (524)
T ss_pred CCceEEEEecCCCcEEEecCCCCe-eEeccccc-------h-----------heeEeecC--CCeEEEEEEcCCCCEEEE
Confidence 999999999999999999999776 99999864 3 45555565 356999999999999999
Q ss_pred EeCCCeEEEEecC
Q 001935 449 VSSKGTCHVFVLS 461 (994)
Q Consensus 449 gS~dGTVhIw~I~ 461 (994)
+-.||.+.|-++.
T Consensus 511 ~~sd~~vcvldlr 523 (524)
T KOG0273|consen 511 CASDGSVCVLDLR 523 (524)
T ss_pred EecCCCceEEEec
Confidence 9999999987763
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.81 E-value=5.3e-19 Score=206.06 Aligned_cols=326 Identities=21% Similarity=0.241 Sum_probs=198.7
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCC
Q 001935 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (994)
Q Consensus 74 ~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~ 152 (994)
.+.+|++|..+| ++|||+. .+.+...|.+|.|+|..+.|-|... +-+|+ +++
T Consensus 116 ~g~LlAtggaD~~v~VWdi~-~~~~th~fkG~gGvVssl~F~~~~~-----------~~lL~--sg~------------- 168 (775)
T KOG0319|consen 116 TGTLLATGGADGRVKVWDIK-NGYCTHSFKGHGGVVSSLLFHPHWN-----------RWLLA--SGA------------- 168 (775)
T ss_pred CCceEEeccccceEEEEEee-CCEEEEEecCCCceEEEEEeCCccc-----------hhhee--ecC-------------
Confidence 357889988877 8999995 5788889999999999999988752 22333 221
Q ss_pred ccccccCCcCCCCCCCCCCCCEEEEEECCCC-eEEEEEe-CCCcEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEE
Q 001935 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-CYEHVLR-FRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSV 227 (994)
Q Consensus 153 ~~~vr~g~~d~~~~~~~~sp~tVrLWDlktg-e~V~tL~-f~S~V~sV~~S~---~iLAVgl~~~I~IwDa~Tle~l~tL 227 (994)
.+.+|++||+.+. .|+++++ +.+.|.++++.. .+|.+|-++-|.+||+.+-+.+.++
T Consensus 169 ------------------~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~l 230 (775)
T KOG0319|consen 169 ------------------TDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTL 230 (775)
T ss_pred ------------------CCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhee
Confidence 2479999999854 4677775 458999999876 4777788889999999876665555
Q ss_pred eecCCcc--------ccCCC-ccccccCcc--------------------------ceE---------------------
Q 001935 228 LTYPVPQ--------LAGQG-AVGINVGYG--------------------------PMA--------------------- 251 (994)
Q Consensus 228 ~t~p~p~--------~~~~g-~~~vnv~~g--------------------------plA--------------------- 251 (994)
..+..-+ +...+ .....++.+ .++
T Consensus 231 p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 231 PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEc
Confidence 4332210 00000 000000000 000
Q ss_pred ---------------------Ecc--cEEEEccCCe--eeccCCccC---CCcCCCCCCCCCcCCCCCceEEEeehhhhh
Q 001935 252 ---------------------VGP--RWLAYASNTL--LLSNSGRLS---PQNLTPSGVSPSTSPGGSSLVARYAMEHSK 303 (994)
Q Consensus 252 ---------------------lgp--RwLAyas~~~--~iwd~G~~s---~qsltp~~~S~stSp~~gsLVa~~A~dssk 303 (994)
+|+ ++||.+.|.+ ++.+.-... ...++..+.|++... .|.+.+...+|.+.
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~-~g~llat~sKD~sv 389 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWS-SGDLLATGSKDKSV 389 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecc-cCcEEEEecCCceE
Confidence 111 2222222211 111100000 001111222332111 12344433333332
Q ss_pred hhh---cccc-----eeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc-----EE----EEec
Q 001935 304 QFA---AGLS-----KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-----II----SQFK 366 (994)
Q Consensus 304 ~la---~Gi~-----ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~-----~i----~~~~ 366 (994)
.+. .+.. +..+++.+.+. .... .+.++..+++++.|+++++|++...+ .+ .+-+
T Consensus 390 ilWr~~~~~~~~~~~a~~~gH~~svg------ava~---~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~ 460 (775)
T KOG0319|consen 390 ILWRLNNNCSKSLCVAQANGHTNSVG------AVAG---SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER 460 (775)
T ss_pred EEEEecCCcchhhhhhhhcccccccc------eeee---cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence 211 1110 11111111111 1111 11222235688999999999998621 11 2446
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 001935 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (994)
Q Consensus 367 aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (994)
+|...|++++++|+-+++||||. +++.+||++.. + +++..| +||++ .|||+.|+|..+.|
T Consensus 461 aHdKdIN~Vaia~ndkLiAT~Sq-DktaKiW~le~-------~----------~l~~vL-sGH~R-Gvw~V~Fs~~dq~l 520 (775)
T KOG0319|consen 461 AHDKDINCVAIAPNDKLIATGSQ-DKTAKIWDLEQ-------L----------RLLGVL-SGHTR-GVWCVSFSKNDQLL 520 (775)
T ss_pred hhcccccceEecCCCceEEeccc-ccceeeecccC-------c----------eEEEEe-eCCcc-ceEEEEecccccee
Confidence 89999999999999999999999 56699999953 2 577777 57665 59999999999999
Q ss_pred EEEeCCCeEEEEecCCCCCCcccccccC
Q 001935 447 AIVSSKGTCHVFVLSPFGGDSGFQTLSS 474 (994)
Q Consensus 447 AsgS~dGTVhIw~I~~~gg~~~~~~H~s 474 (994)
|++|.|+||+||+|+.+.+..+|..|.+
T Consensus 521 aT~SgD~TvKIW~is~fSClkT~eGH~~ 548 (775)
T KOG0319|consen 521 ATCSGDKTVKIWSISTFSCLKTFEGHTS 548 (775)
T ss_pred EeccCCceEEEEEeccceeeeeecCccc
Confidence 9999999999999999999999999964
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.81 E-value=1.9e-17 Score=187.67 Aligned_cols=340 Identities=14% Similarity=0.131 Sum_probs=211.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCC-eEEEEEecCcEEEEEccCCCcceEeee---eccCCEEEEEEecCCCCCCCCCCcc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFK-QVLLLGYQNGFQVLDVEDASNFNELVS---KRDGPVSFLQMQPFPVKDDGCEGFR 127 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~-~vL~lGy~~G~qVWDv~~~g~v~ells---~hdGpV~~v~~lP~p~~s~~~D~F~ 127 (994)
..+|.-=|..++|. |++ ++..+|.++.+.|||-- +|+..-.|+ .|.|.|..|.++|+..
T Consensus 186 ~r~HskFV~~VRys-------PDG~~Fat~gsDgki~iyDGk-tge~vg~l~~~~aHkGsIfalsWsPDs~--------- 248 (603)
T KOG0318|consen 186 FREHSKFVNCVRYS-------PDGSRFATAGSDGKIYIYDGK-TGEKVGELEDSDAHKGSIFALSWSPDST--------- 248 (603)
T ss_pred ccccccceeeEEEC-------CCCCeEEEecCCccEEEEcCC-CccEEEEecCCCCccccEEEEEECCCCc---------
Confidence 34456667888885 344 45555666669999974 455555555 6889999999999862
Q ss_pred ccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEE----EEEe-cC
Q 001935 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVC----MVRC-SP 202 (994)
Q Consensus 128 ~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~----sV~~-S~ 202 (994)
-+|.+++ +.++||||+.+++++.++.+.+.|. .+-+ +.
T Consensus 249 ----~~~T~Sa---------------------------------Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd 291 (603)
T KOG0318|consen 249 ----QFLTVSA---------------------------------DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD 291 (603)
T ss_pred ----eEEEecC---------------------------------CceEEEEEeeccceEEEeecCCchhceEEEEEEeCC
Confidence 3565543 4689999999999999999877652 2233 45
Q ss_pred CeEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccCC--eeeccCCc-----cC
Q 001935 203 RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNT--LLLSNSGR-----LS 273 (994)
Q Consensus 203 ~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~~--~~iwd~G~-----~s 273 (994)
.++.|++.+.|-++++.+++.++++.+|... ...+++++ .+|-.++.. +.-|+.|. +.
T Consensus 292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~-------------ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~ 358 (603)
T KOG0318|consen 292 HLITVSLSGTINYLNPSDPSVLKVISGHNKS-------------ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA 358 (603)
T ss_pred eEEEEEcCcEEEEecccCCChhheecccccc-------------eeEEEEcCCCCEEEeeccCceEEEEecCCccccccc
Confidence 6888999999999999999988888887542 23455544 344333322 33465422 11
Q ss_pred CCcCCCCCCCCCcCCCCCceEEEeehhhhhhh---------------h----------cc-c-----ce---eeccc--c
Q 001935 274 PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF---------------A----------AG-L-----SK---TLSKY--C 317 (994)
Q Consensus 274 ~qsltp~~~S~stSp~~gsLVa~~A~dssk~l---------------a----------~G-i-----~k---tlS~y--~ 317 (994)
++.++..+..+..+.. +.+...-..|..+.+ . .| + ++ -|+.. +
T Consensus 359 g~~h~nqI~~~~~~~~-~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~ 437 (603)
T KOG0318|consen 359 GKGHTNQIKGMAASES-GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV 437 (603)
T ss_pred cccccceEEEEeecCC-CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc
Confidence 1222222211111110 111110000000000 0 00 0 00 00000 0
Q ss_pred ccccCCCC-CCCccCCCccccccccccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeE
Q 001935 318 QELLPDGS-SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDPSGTLLVTASVYGNNI 394 (994)
Q Consensus 318 ~~l~p~~s-~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~--~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~I 394 (994)
.. .+.+. .+....+++.. ..+-++.||.|+||.+.... ....+..|..+|++++|||||++||.++..+. +
T Consensus 438 ~~-~~~~y~~s~vAv~~~~~----~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk-v 511 (603)
T KOG0318|consen 438 SS-IPIGYESSAVAVSPDGS----EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK-V 511 (603)
T ss_pred ee-eccccccceEEEcCCCC----EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCc-E
Confidence 00 01110 11122233332 23467899999999998755 34567789999999999999999999999554 8
Q ss_pred EEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccc-cccc
Q 001935 395 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF-QTLS 473 (994)
Q Consensus 395 rVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~-~~H~ 473 (994)
-+|++... ....-+.++|.++|.+|+||||++.||+||.|.+|+||.++.......+ .+|
T Consensus 512 v~yd~~s~------------------~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH- 572 (603)
T KOG0318|consen 512 VLYDVASR------------------EVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH- 572 (603)
T ss_pred EEEEcccC------------------ceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccc-
Confidence 89998642 2233446778899999999999999999999999999999887766544 355
Q ss_pred CCCCCCccCCccCCCccc
Q 001935 474 SQGGDPYLFPVLSLPWWC 491 (994)
Q Consensus 474 s~~~~~~~~p~~~lpw~~ 491 (994)
.+ .++.|.|.-
T Consensus 573 ------~~-gVn~v~wld 583 (603)
T KOG0318|consen 573 ------LG-GVNSVAWLD 583 (603)
T ss_pred ------cc-CceeEEEec
Confidence 22 266666643
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=1.7e-17 Score=193.75 Aligned_cols=267 Identities=20% Similarity=0.286 Sum_probs=177.5
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC-cEEEEEecCCCCCCC-CCCCC
Q 001935 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH-PFLLVVAGEDTNTLA-PGQNR 150 (994)
Q Consensus 74 ~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr-pLLAvVsgd~~~~~~-~~q~~ 150 (994)
.-.+|++|..+| |.++.+. .=++...|+-.+-+|..+.+.-.+-- =.|...+ -.|+|+--. ..+- +.|.
T Consensus 276 ~t~~lvvgFssG~f~LyelP-~f~lih~LSis~~~I~t~~~N~tGDW----iA~g~~klgQLlVweWq--sEsYVlKQQ- 347 (893)
T KOG0291|consen 276 GTNLLVVGFSSGEFGLYELP-DFNLIHSLSISDQKILTVSFNSTGDW----IAFGCSKLGQLLVWEWQ--SESYVLKQQ- 347 (893)
T ss_pred CceEEEEEecCCeeEEEecC-CceEEEEeecccceeeEEEecccCCE----EEEcCCccceEEEEEee--ccceeeecc-
Confidence 457999999999 6899994 44566777777778888887633300 0122222 012332110 0000 1222
Q ss_pred CCcccc------ccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecC--C-eEEEEeCCeEEEEECCC
Q 001935 151 SHLGGV------RDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--R-IVAVGLATQIYCFDALT 220 (994)
Q Consensus 151 ~~~~~v------r~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~-f~S~V~sV~~S~--~-iLAVgl~~~I~IwDa~T 220 (994)
+|...+ +||+.-...+ .+++|+|||..+|-|+.|+. +.+.|.+|.|.. + +|..++|++|+.||+..
T Consensus 348 gH~~~i~~l~YSpDgq~iaTG~----eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 348 GHSDRITSLAYSPDGQLIATGA----EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred ccccceeeEEECCCCcEEEecc----CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 222222 4544322211 36999999999999999995 557899998876 4 45568899999999988
Q ss_pred CceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehh
Q 001935 221 LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME 300 (994)
Q Consensus 221 le~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~d 300 (994)
.++.+++.. |.|. .+..+|+.+ + |.+|.
T Consensus 424 YrNfRTft~-P~p~-----------QfscvavD~----------------------------------s-GelV~----- 451 (893)
T KOG0291|consen 424 YRNFRTFTS-PEPI-----------QFSCVAVDP----------------------------------S-GELVC----- 451 (893)
T ss_pred cceeeeecC-CCce-----------eeeEEEEcC----------------------------------C-CCEEE-----
Confidence 777766643 3320 122223221 1 11211
Q ss_pred hhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCC
Q 001935 301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS 380 (994)
Q Consensus 301 ssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPd 380 (994)
+-+...-.|.||++++|+.+-.|.+|.+||++|+|+|+
T Consensus 452 ------------------------------------------AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 452 ------------------------------------------AGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred ------------------------------------------eeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence 00112336999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 001935 381 GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 381 GtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I 460 (994)
|.+|||+|. +++||+|++-.. .| ..-++. .+..+..++|+|||+-||+++.||.|.+|++
T Consensus 490 ~~~LaS~SW-DkTVRiW~if~s-----~~-----------~vEtl~---i~sdvl~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 490 GSLLASGSW-DKTVRIWDIFSS-----SG-----------TVETLE---IRSDVLAVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred cCeEEeccc-cceEEEEEeecc-----Cc-----------eeeeEe---eccceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence 999999999 566999999531 12 223332 1245899999999999999999999999999
Q ss_pred CCCCCC
Q 001935 461 SPFGGD 466 (994)
Q Consensus 461 ~~~gg~ 466 (994)
......
T Consensus 550 ~~~~q~ 555 (893)
T KOG0291|consen 550 KEAVQV 555 (893)
T ss_pred hhceee
Confidence 875443
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.80 E-value=2.2e-17 Score=176.18 Aligned_cols=246 Identities=15% Similarity=0.187 Sum_probs=182.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCC----CcceEeeeeccCCEEEEEEecCCCCCCCCCCc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDA----SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGF 126 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~-G~qVWDv~~~----g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F 126 (994)
.++|+|.|+-..... ..+.+|+.+..+ .+-+|++... |...+.+.+|...|..+.+.+++.
T Consensus 11 l~gh~d~Vt~la~~~------~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~-------- 76 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKI------KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN-------- 76 (315)
T ss_pred ecCCCceEEEEEeec------CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc--------
Confidence 478999998877654 135677777665 4899999532 445677777888888888887662
Q ss_pred cccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--C
Q 001935 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--R 203 (994)
Q Consensus 127 ~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--~ 203 (994)
+ |+ + ++| ++++|+||+.+|+..+.|..| .-|++|++++ +
T Consensus 77 -----~-al-S---------------------~sw----------D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~ 118 (315)
T KOG0279|consen 77 -----F-AL-S---------------------ASW----------DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR 118 (315)
T ss_pred -----e-EE-e---------------------ccc----------cceEEEEEecCCcEEEEEEecCCceEEEEecCCCc
Confidence 2 33 1 122 589999999999988888766 4789999988 4
Q ss_pred eEEEEe-CCeEEEEECCCCceeEEEeecC-C-ccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCC
Q 001935 204 IVAVGL-ATQIYCFDALTLENKFSVLTYP-V-PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (994)
Q Consensus 204 iLAVgl-~~~I~IwDa~Tle~l~tL~t~p-~-p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~ 280 (994)
.++.|. |.+|.+||+. +++.+++.... . + .. .+-|.++.
T Consensus 119 qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~W-------------Vs-------cvrfsP~~----------------- 160 (315)
T KOG0279|consen 119 QIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREW-------------VS-------CVRFSPNE----------------- 160 (315)
T ss_pred eeecCCCcceeeeeeec-ccEEEEEecCCCcCc-------------EE-------EEEEcCCC-----------------
Confidence 566555 6689999976 45666665431 1 1 01 11122210
Q ss_pred CCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 001935 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (994)
Q Consensus 281 ~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~ 360 (994)
. + ..+++++.|++|+|||+.+.+
T Consensus 161 ----------~----------------------------------------~-------p~Ivs~s~DktvKvWnl~~~~ 183 (315)
T KOG0279|consen 161 ----------S----------------------------------------N-------PIIVSASWDKTVKVWNLRNCQ 183 (315)
T ss_pred ----------C----------------------------------------C-------cEEEEccCCceEEEEccCCcc
Confidence 0 0 023466889999999999999
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 001935 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (994)
Q Consensus 361 ~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFS 440 (994)
....+.+|++-|++++|||||.++|+++.+|. +.+||+.. + +++|.|.. ...|.+++|+
T Consensus 184 l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~-------~----------k~lysl~a---~~~v~sl~fs 242 (315)
T KOG0279|consen 184 LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNE-------G----------KNLYSLEA---FDIVNSLCFS 242 (315)
T ss_pred hhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccC-------C----------ceeEeccC---CCeEeeEEec
Confidence 99999999999999999999999999999776 89999964 3 68998853 4689999999
Q ss_pred cCCCEEEEEeCCCeEEEEecCCCCCC
Q 001935 441 HYSQWIAIVSSKGTCHVFVLSPFGGD 466 (994)
Q Consensus 441 pDg~~LAsgS~dGTVhIw~I~~~gg~ 466 (994)
|.--||+.+...+ |+||++++....
T Consensus 243 pnrywL~~at~~s-IkIwdl~~~~~v 267 (315)
T KOG0279|consen 243 PNRYWLCAATATS-IKIWDLESKAVV 267 (315)
T ss_pred CCceeEeeccCCc-eEEEeccchhhh
Confidence 9999999887765 999999886543
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=5.7e-18 Score=185.42 Aligned_cols=254 Identities=15% Similarity=0.148 Sum_probs=191.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
..+|.+-|.-+.|+- .+++|+.+..+- +++||.+..-.+++.+.+|+-.|.++.++|.+
T Consensus 146 LrGHt~sv~di~~~a-------~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g------------- 205 (406)
T KOG0295|consen 146 LRGHTDSVFDISFDA-------SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG------------- 205 (406)
T ss_pred hhccccceeEEEEec-------CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-------------
Confidence 456777788888873 457899988886 99999976667788889999999999999875
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEE
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV 207 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--~iLAV 207 (994)
..++.++ .+++|+.|++.+|.++.++.-+ ..|..|+.+. .++|+
T Consensus 206 d~ilS~s---------------------------------rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As 252 (406)
T KOG0295|consen 206 DHILSCS---------------------------------RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIAS 252 (406)
T ss_pred Ceeeecc---------------------------------cccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEe
Confidence 2455322 2478999999999999999765 4899999988 46666
Q ss_pred Ee-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCc
Q 001935 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (994)
Q Consensus 208 gl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~st 286 (994)
+. +.+|++|-+.+++++..++.|..|. ..+++.|- .+|+. +. -++
T Consensus 253 ~s~dqtl~vW~~~t~~~k~~lR~hEh~v-------------Eci~wap~-~~~~~----i~----------------~at 298 (406)
T KOG0295|consen 253 CSNDQTLRVWVVATKQCKAELREHEHPV-------------ECIAWAPE-SSYPS----IS----------------EAT 298 (406)
T ss_pred cCCCceEEEEEeccchhhhhhhccccce-------------EEEEeccc-ccCcc----hh----------------hcc
Confidence 55 4479999999998888887766531 12232210 01111 00 000
Q ss_pred CCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 001935 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (994)
Q Consensus 287 Sp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~ 366 (994)
... + ++. .+.+++.|++|++||+.++.++-+|.
T Consensus 299 ~~~------------------------------------------~-~~~----~l~s~SrDktIk~wdv~tg~cL~tL~ 331 (406)
T KOG0295|consen 299 GST------------------------------------------N-GGQ----VLGSGSRDKTIKIWDVSTGMCLFTLV 331 (406)
T ss_pred CCC------------------------------------------C-Ccc----EEEeecccceEEEEeccCCeEEEEEe
Confidence 000 0 011 12367899999999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 001935 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (994)
Q Consensus 367 aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (994)
+|.+.|..++|+|-|++|+++..|++ +||||+.. + +++..+. .+..-|.++.|..+.-++
T Consensus 332 ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~-------~----------~cmk~~~--ah~hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 332 GHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKN-------L----------QCMKTLE--AHEHFVTSLDFHKTAPYV 391 (406)
T ss_pred cccceeeeeEEcCCCeEEEEEecCCc-EEEEEecc-------c----------eeeeccC--CCcceeEEEecCCCCceE
Confidence 99999999999999999999998665 99999964 2 5666664 244568999999999999
Q ss_pred EEEeCCCeEEEEe
Q 001935 447 AIVSSKGTCHVFV 459 (994)
Q Consensus 447 AsgS~dGTVhIw~ 459 (994)
.+|+-|.|++||.
T Consensus 392 vTGsVdqt~KvwE 404 (406)
T KOG0295|consen 392 VTGSVDQTVKVWE 404 (406)
T ss_pred Eeccccceeeeee
Confidence 9999999999995
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.79 E-value=6.3e-17 Score=173.53 Aligned_cols=255 Identities=13% Similarity=0.090 Sum_probs=186.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
..+|..+|....|- .+++.|+.+..+| +-|||.-. .+-...+..+..+|-..++.|.+
T Consensus 51 LkGH~~Ki~~~~ws-------~Dsr~ivSaSqDGklIvWDs~T-tnK~haipl~s~WVMtCA~sPSg------------- 109 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWS-------TDSRRIVSASQDGKLIVWDSFT-TNKVHAIPLPSSWVMTCAYSPSG------------- 109 (343)
T ss_pred ecccccceeeeEec-------CCcCeEEeeccCCeEEEEEccc-ccceeEEecCceeEEEEEECCCC-------------
Confidence 35677777766664 3677888888888 79999854 44556677778899999988865
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCC------eEEEEEeC-CCcEEEEEecC-
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH------CYEHVLRF-RSSVCMVRCSP- 202 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktg------e~V~tL~f-~S~V~sV~~S~- 202 (994)
.++| +| | .++...||++++. ...+.|.- .+.+-+.+|-.
T Consensus 110 ~~VA--cG------G-------------------------LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD 156 (343)
T KOG0286|consen 110 NFVA--CG------G-------------------------LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD 156 (343)
T ss_pred CeEE--ec------C-------------------------cCceeEEEecccccccccceeeeeecCccceeEEEEEcCC
Confidence 4555 22 1 2478999999865 23344543 45777777755
Q ss_pred -CeEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCC
Q 001935 203 -RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG 281 (994)
Q Consensus 203 -~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~ 281 (994)
++|..+.|.++.+||+.+++....+.+|.. -.|+++ .++
T Consensus 157 ~~ilT~SGD~TCalWDie~g~~~~~f~GH~g---------------DV~sls-----l~p-------------------- 196 (343)
T KOG0286|consen 157 NHILTGSGDMTCALWDIETGQQTQVFHGHTG---------------DVMSLS-----LSP-------------------- 196 (343)
T ss_pred CceEecCCCceEEEEEcccceEEEEecCCcc---------------cEEEEe-----cCC--------------------
Confidence 566667788999999999998888877643 123332 111
Q ss_pred CCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 001935 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (994)
Q Consensus 282 ~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~ 361 (994)
.++ -++++++-|+..+|||+..+.+
T Consensus 197 -------~~~------------------------------------------------ntFvSg~cD~~aklWD~R~~~c 221 (343)
T KOG0286|consen 197 -------SDG------------------------------------------------NTFVSGGCDKSAKLWDVRSGQC 221 (343)
T ss_pred -------CCC------------------------------------------------CeEEecccccceeeeeccCcce
Confidence 000 0234567899999999999999
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 001935 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (994)
Q Consensus 362 i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSp 441 (994)
+.+|.+|.+.|++++|-|+|.-+||+|.|++ +|+||+... +.+..+..-.....|.+++||-
T Consensus 222 ~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD-----------------~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 222 VQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRAD-----------------QELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred eEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCC-----------------cEEeeeccCcccCCceeEEEcc
Confidence 9999999999999999999999999999776 999999742 3444444333456899999999
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCCCccccccc
Q 001935 442 YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (994)
Q Consensus 442 Dg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~ 473 (994)
.|++|.+|-.|.+++||+.-...-.-.+..|-
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHe 315 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHE 315 (343)
T ss_pred cccEEEeeecCCceeEeeccccceEEEeeccC
Confidence 99999999999999999964433333445664
No 19
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.78 E-value=1.1e-16 Score=197.84 Aligned_cols=227 Identities=15% Similarity=0.227 Sum_probs=160.9
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCc
Q 001935 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (994)
Q Consensus 75 ~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~ 153 (994)
+..|++|..+| ++|||+. .++....+..|.+.|..+++.|.. ..+|+..+
T Consensus 545 ~~~las~~~Dg~v~lWd~~-~~~~~~~~~~H~~~V~~l~~~p~~------------~~~L~Sgs---------------- 595 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVA-RSQLVTEMKEHEKRVWSIDYSSAD------------PTLLASGS---------------- 595 (793)
T ss_pred CCEEEEEeCCCeEEEEECC-CCeEEEEecCCCCCEEEEEEcCCC------------CCEEEEEc----------------
Confidence 34566665554 9999995 466667778899999999998621 13555421
Q ss_pred cccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEEEe-CCeEEEEECCCCce-eEEEe
Q 001935 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLEN-KFSVL 228 (994)
Q Consensus 154 ~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~---~iLAVgl-~~~I~IwDa~Tle~-l~tL~ 228 (994)
.+++|++||+++++++.++..+..|.++.+++ ..|++|. ++.|++||+.+.+. +.++.
T Consensus 596 -----------------~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~ 658 (793)
T PLN00181 596 -----------------DDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658 (793)
T ss_pred -----------------CCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec
Confidence 14789999999999999998888999999853 5677665 56899999987542 33333
Q ss_pred ecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcc
Q 001935 229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (994)
Q Consensus 229 t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~G 308 (994)
.|..+ ..+++|... .
T Consensus 659 ~h~~~--------------------V~~v~f~~~----------------------------~----------------- 673 (793)
T PLN00181 659 GHSKT--------------------VSYVRFVDS----------------------------S----------------- 673 (793)
T ss_pred CCCCC--------------------EEEEEEeCC----------------------------C-----------------
Confidence 33221 012222110 0
Q ss_pred cceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCC------CcEEEEeccCCCCeEEEEECCCCC
Q 001935 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT------RAIISQFKAHTSPISALCFDPSGT 382 (994)
Q Consensus 309 i~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s------~~~i~~~~aHtspIsaLaFSPdGt 382 (994)
.+++++.||.|+|||+.. ...+..|.+|...+.+++|+|+|.
T Consensus 674 --------------------------------~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~ 721 (793)
T PLN00181 674 --------------------------------TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG 721 (793)
T ss_pred --------------------------------EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC
Confidence 112456799999999974 357889999999999999999999
Q ss_pred EEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---------cccccccEEEEEEccCCCEEEEEeCCC
Q 001935 383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---------RGITSATIQDICFSHYSQWIAIVSSKG 453 (994)
Q Consensus 383 lLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~---------RG~t~a~I~sIaFSpDg~~LAsgS~dG 453 (994)
+||+++.+|+ |+||+.... . ....+.+. -..+...|.+++|+||++.|++++.+|
T Consensus 722 ~lasgs~D~~-v~iw~~~~~-------~--------~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG 785 (793)
T PLN00181 722 YIATGSETNE-VFVYHKAFP-------M--------PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTG 785 (793)
T ss_pred EEEEEeCCCE-EEEEECCCC-------C--------ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence 9999999765 999997421 0 00111110 011234699999999999999999999
Q ss_pred eEEEEec
Q 001935 454 TCHVFVL 460 (994)
Q Consensus 454 TVhIw~I 460 (994)
+|+||++
T Consensus 786 ~I~i~~~ 792 (793)
T PLN00181 786 NIKILEM 792 (793)
T ss_pred cEEEEec
Confidence 9999986
No 20
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=9.2e-18 Score=183.82 Aligned_cols=251 Identities=16% Similarity=0.198 Sum_probs=189.5
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
++++-.|..+.|.. ..-+++++.+++ +++||.. ++++.+.|.+|...|..|.+.. .+.
T Consensus 105 ~g~r~~vt~v~~hp-------~~~~v~~as~d~tikv~D~~-tg~~e~~LrGHt~sv~di~~~a-------------~Gk 163 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHP-------SEALVVSASEDATIKVFDTE-TGELERSLRGHTDSVFDISFDA-------------SGK 163 (406)
T ss_pred hccccceeeeeecc-------CceEEEEecCCceEEEEEcc-chhhhhhhhccccceeEEEEec-------------Ccc
Confidence 45677788888853 455777776665 9999995 6889899999988899988763 223
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCC-CeEEEEEeCC-CcEEEEEecC--CeEEE
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS-HCYEHVLRFR-SSVCMVRCSP--RIVAV 207 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlkt-ge~V~tL~f~-S~V~sV~~S~--~iLAV 207 (994)
+||.++ ++-.+++||+.+ .++++.+.-+ ..|-+|.+-| +.|+.
T Consensus 164 ~l~tcS---------------------------------sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS 210 (406)
T KOG0295|consen 164 YLATCS---------------------------------SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILS 210 (406)
T ss_pred EEEecC---------------------------------CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeee
Confidence 555432 123499999987 5677776544 4677888766 55555
Q ss_pred -EeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCc
Q 001935 208 -GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (994)
Q Consensus 208 -gl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~st 286 (994)
+-|+.|+.|++.++.+++++..|+-+ .|.++...
T Consensus 211 ~srD~tik~We~~tg~cv~t~~~h~ew--------------------vr~v~v~~------------------------- 245 (406)
T KOG0295|consen 211 CSRDNTIKAWECDTGYCVKTFPGHSEW--------------------VRMVRVNQ------------------------- 245 (406)
T ss_pred cccccceeEEecccceeEEeccCchHh--------------------EEEEEecC-------------------------
Confidence 55678999999999998888765442 01111111
Q ss_pred CCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 001935 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (994)
Q Consensus 287 Sp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~ 366 (994)
+|. .+++++.|.+|++|=+.++++.+.|+
T Consensus 246 ---DGt------------------------------------------------i~As~s~dqtl~vW~~~t~~~k~~lR 274 (406)
T KOG0295|consen 246 ---DGT------------------------------------------------IIASCSNDQTLRVWVVATKQCKAELR 274 (406)
T ss_pred ---Cee------------------------------------------------EEEecCCCceEEEEEeccchhhhhhh
Confidence 011 23467889999999999999999999
Q ss_pred cCCCCeEEEEECCC---------------CCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 001935 367 AHTSPISALCFDPS---------------GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS 431 (994)
Q Consensus 367 aHtspIsaLaFSPd---------------GtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~ 431 (994)
.|..||-+++|-|. |.+|+++|.|+ +||+||+.. | .+|++|. |+ .
T Consensus 275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk-tIk~wdv~t-------g----------~cL~tL~-gh-d 334 (406)
T KOG0295|consen 275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK-TIKIWDVST-------G----------MCLFTLV-GH-D 334 (406)
T ss_pred ccccceEEEEecccccCcchhhccCCCCCccEEEeecccc-eEEEEeccC-------C----------eEEEEEe-cc-c
Confidence 99999999999764 25899999955 599999954 4 6999994 54 4
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccccccc
Q 001935 432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (994)
Q Consensus 432 a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~ 473 (994)
..|.+++|+|-|+||+++.+|+|+|||++....+..++.+|.
T Consensus 335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc
Confidence 579999999999999999999999999999998888777663
No 21
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2e-17 Score=195.07 Aligned_cols=301 Identities=17% Similarity=0.220 Sum_probs=197.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecC-CCCCCCCCCc---
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPF-PVKDDGCEGF--- 126 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~-p~~s~~~D~F--- 126 (994)
+|....+|.-..|. |.+-.++++..+| ||+||.- -+.+.+-+..|||||+.|.|-|. |.+..++|++
T Consensus 5 fEskSsRvKglsFH-------P~rPwILtslHsG~IQlWDYR-M~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIk 76 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFH-------PKRPWILTSLHSGVIQLWDYR-MGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIK 76 (1202)
T ss_pred hhcccccccceecC-------CCCCEEEEeecCceeeeehhh-hhhHHhhhhccCCccceeeecCCCCeEEecCCccEEE
Confidence 45566677777785 4678999999988 8999984 46778888899999999999886 5665555543
Q ss_pred ----cccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCC--CCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEE
Q 001935 127 ----RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGN--CVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVR 199 (994)
Q Consensus 127 ----~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~--~~~sp~tVrLWDlktge~V~tL~f~S-~V~sV~ 199 (994)
...|.|.-+ .||+..+|+--+-..-.. .++-+.|||||++++++||++|..|+ .|.+.+
T Consensus 77 VWnYk~rrclftL--------------~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 77 VWNYKTRRCLFTL--------------LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred EEecccceehhhh--------------ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 222322211 155666666544111001 01225899999999999999998765 899999
Q ss_pred ecC--CeEEE-EeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCc
Q 001935 200 CSP--RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQN 276 (994)
Q Consensus 200 ~S~--~iLAV-gl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qs 276 (994)
|.| +++|+ ++|++|++||+..++....-.. ..+ ..|.-.. .+.- + .|.
T Consensus 143 FhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg-~~e--------------~~~~~~~------~~~d-L--fg~----- 193 (1202)
T KOG0292|consen 143 FHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG-SLE--------------DQMRGQQ------GNSD-L--FGQ----- 193 (1202)
T ss_pred cCCccceEEEecccceEEEEeecchhccCCCCC-Cch--------------hhhhccc------cchh-h--cCC-----
Confidence 999 45554 6788999999998764321111 000 0000000 0000 0 000
Q ss_pred CCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEEC
Q 001935 277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 356 (994)
Q Consensus 277 ltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl 356 (994)
...|+ |++..|.-+.+ .-.+|+|.- ..+.+++.|..|++|-.
T Consensus 194 --------------~DaVV-------K~VLEGHDRGV-------------NwaAfhpTl----pliVSG~DDRqVKlWrm 235 (1202)
T KOG0292|consen 194 --------------TDAVV-------KHVLEGHDRGV-------------NWAAFHPTL----PLIVSGADDRQVKLWRM 235 (1202)
T ss_pred --------------cCeee-------eeeeccccccc-------------ceEEecCCc----ceEEecCCcceeeEEEe
Confidence 01111 22222221000 001111110 02457889999999998
Q ss_pred CCCc--EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccE
Q 001935 357 VTRA--IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI 434 (994)
Q Consensus 357 ~s~~--~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I 434 (994)
..-+ .+-+.++|.++|+++-|+|.-.++.+.|+|+ .|||||... ...+++|+|- +..-
T Consensus 236 netKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDk-sirVwDm~k-----------------Rt~v~tfrre--ndRF 295 (1202)
T KOG0292|consen 236 NETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDK-SIRVWDMTK-----------------RTSVQTFRRE--NDRF 295 (1202)
T ss_pred ccccceeehhhhcccCCcceEEecCccceeEecCCCc-cEEEEeccc-----------------ccceeeeecc--CCeE
Confidence 7654 5678899999999999999999999999965 599999853 1467888884 4567
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 435 QDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 435 ~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
|.|+-.|..+.+|+|.+.|.+ ||+++.
T Consensus 296 W~laahP~lNLfAAgHDsGm~-VFkleR 322 (1202)
T KOG0292|consen 296 WILAAHPELNLFAAGHDSGMI-VFKLER 322 (1202)
T ss_pred EEEEecCCcceeeeecCCceE-EEEEcc
Confidence 999999999999999888875 999874
No 22
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.76 E-value=5.9e-17 Score=174.23 Aligned_cols=258 Identities=15% Similarity=0.094 Sum_probs=186.8
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEe-cCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGY-QNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy-~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
..+|+..|.-+.|+- ++.+|++|. +.-|-+|++...-+-.-++.+|.|.|-.|.+.++.
T Consensus 43 l~gh~geI~~~~F~P-------~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~------------- 102 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHP-------DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG------------- 102 (338)
T ss_pred cCCCcceEEEEEECC-------CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC-------------
Confidence 678999999999983 566777765 55699999743222235677899999999988765
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcE-EEEEecC---CeEE
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSV-CMVRCSP---RIVA 206 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V-~sV~~S~---~iLA 206 (994)
..|+. ++ .+++|+.||.++|+++..++.+..+ .++..++ .+|.
T Consensus 103 s~i~S-~g--------------------------------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~ 149 (338)
T KOG0265|consen 103 SHILS-CG--------------------------------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVC 149 (338)
T ss_pred CEEEE-ec--------------------------------CCceEEEEecccceeeehhccccceeeecCccccCCeEEE
Confidence 23332 21 2589999999999999988877654 4444333 4666
Q ss_pred EEeC-CeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCC
Q 001935 207 VGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (994)
Q Consensus 207 Vgl~-~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~s 285 (994)
.+.+ .++++||+++.+.++++. .+ |...|++ |...
T Consensus 150 SgsdD~t~kl~D~R~k~~~~t~~---~k-------------yqltAv~-----f~d~----------------------- 185 (338)
T KOG0265|consen 150 SGSDDGTLKLWDIRKKEAIKTFE---NK-------------YQLTAVG-----FKDT----------------------- 185 (338)
T ss_pred ecCCCceEEEEeecccchhhccc---cc-------------eeEEEEE-----eccc-----------------------
Confidence 6655 479999999776655442 11 2233332 1110
Q ss_pred cCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 001935 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (994)
Q Consensus 286 tSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~ 365 (994)
+. ...++.-|+.|++||+..+..+.++
T Consensus 186 -----s~------------------------------------------------qv~sggIdn~ikvWd~r~~d~~~~l 212 (338)
T KOG0265|consen 186 -----SD------------------------------------------------QVISGGIDNDIKVWDLRKNDGLYTL 212 (338)
T ss_pred -----cc------------------------------------------------ceeeccccCceeeeccccCcceEEe
Confidence 00 0114567899999999999999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccccc--EEEEEEccCC
Q 001935 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT--IQDICFSHYS 443 (994)
Q Consensus 366 ~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~--I~sIaFSpDg 443 (994)
.+|..+|..|..+|+|.+|.+-+-| .++||||++|. .+..+++..+..+.++.. ...++|||++
T Consensus 213 sGh~DtIt~lsls~~gs~llsnsMd-~tvrvwd~rp~-------------~p~~R~v~if~g~~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 213 SGHADTITGLSLSRYGSFLLSNSMD-NTVRVWDVRPF-------------APSQRCVKIFQGHIHNFEKNLLKCSWSPNG 278 (338)
T ss_pred ecccCceeeEEeccCCCcccccccc-ceEEEEEeccc-------------CCCCceEEEeecchhhhhhhcceeeccCCC
Confidence 9999999999999999999999995 45999999873 233466777766666553 4578999999
Q ss_pred CEEEEEeCCCeEEEEecCCCCCCccccccc
Q 001935 444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (994)
Q Consensus 444 ~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~ 473 (994)
+++.++|.|..++||+....+....+-.|.
T Consensus 279 ~~i~ags~dr~vyvwd~~~r~~lyklpGh~ 308 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTSRRILYKLPGHY 308 (338)
T ss_pred CccccccccceEEEeecccccEEEEcCCcc
Confidence 999999999999999987655444444554
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.76 E-value=9.6e-17 Score=169.12 Aligned_cols=228 Identities=19% Similarity=0.227 Sum_probs=161.6
Q ss_pred CCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEeCCeEEEEECCCCce--eEEEeecCCccccCCCcccccc
Q 001935 171 SPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINV 245 (994)
Q Consensus 171 sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--~iLAVgl~~~I~IwDa~Tle~--l~tL~t~p~p~~~~~g~~~vnv 245 (994)
++.|||||.+.+|.|..+++++ +.|..+.+.+ +.||++....|++||+.+... +.++..+..
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k------------- 84 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK------------- 84 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC-------------
Confidence 4689999999999999999997 6898777766 789999999999999998653 455544422
Q ss_pred CccceEEc----ccEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeecccccc
Q 001935 246 GYGPMAVG----PRWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 319 (994)
Q Consensus 246 ~~gplAlg----pRwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~ 319 (994)
+.+++| .||+..++. .+.||+.-..+-|.. ...
T Consensus 85 --NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~---------------------------------------~~~ 123 (311)
T KOG0315|consen 85 --NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN---------------------------------------YQH 123 (311)
T ss_pred --ceEEEEEeecCeEEEecCCCceEEEEeccCcccchh---------------------------------------ccC
Confidence 344443 399988876 478898411110000 000
Q ss_pred ccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCeEEEEe
Q 001935 320 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFR 398 (994)
Q Consensus 320 l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a-HtspIsaLaFSPdGtlLATAS~dGt~IrVwd 398 (994)
..|.+... +..++. -+.+++++|.|+|||+....+...+.. -..+|.+|+..|||++|+.+-.+|+ ..||+
T Consensus 124 ~spVn~vv-lhpnQt------eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~ 195 (311)
T KOG0315|consen 124 NSPVNTVV-LHPNQT------ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWR 195 (311)
T ss_pred CCCcceEE-ecCCcc------eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEE
Confidence 01111100 011111 234778999999999998876665554 4579999999999999999999888 89999
Q ss_pred CCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC-CCCccccccc
Q 001935 399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF-GGDSGFQTLS 473 (994)
Q Consensus 399 i~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~-gg~~~~~~H~ 473 (994)
+... .. ....+.+.+|+. ++.-|..+-||||+++||++|.|.|++||.++.+ +++..+..|.
T Consensus 196 l~~~-------~~----~s~l~P~~k~~a--h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~ 258 (311)
T KOG0315|consen 196 LLNH-------QT----ASELEPVHKFQA--HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ 258 (311)
T ss_pred ccCC-------Cc----cccceEhhheec--ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence 8642 10 112245555542 3456899999999999999999999999999988 7777777774
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.75 E-value=6e-16 Score=180.51 Aligned_cols=238 Identities=18% Similarity=0.222 Sum_probs=176.3
Q ss_pred CCCeEEEEEecCc-EEEEEccCCCc--ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCC
Q 001935 73 VFKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQN 149 (994)
Q Consensus 73 ~~~~vL~lGy~~G-~qVWDv~~~g~--v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~ 149 (994)
++++.|+.+..++ +++|+... .. +...+..|.-.|+.++|.|++. +|+ ++.
T Consensus 169 ~~g~~l~~~~~~~~i~~~~~~~-~~~~~~~~l~~h~~~v~~~~fs~d~~-------------~l~--s~s---------- 222 (456)
T KOG0266|consen 169 PDGRALAAASSDGLIRIWKLEG-IKSNLLRELSGHTRGVSDVAFSPDGS-------------YLL--SGS---------- 222 (456)
T ss_pred CCCCeEEEccCCCcEEEeeccc-ccchhhccccccccceeeeEECCCCc-------------EEE--Eec----------
Confidence 3566777776665 89999943 44 5555578999999999998871 333 221
Q ss_pred CCCccccccCCcCCCCCCCCCCCCEEEEEEC-CCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCcee
Q 001935 150 RSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-QSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENK 224 (994)
Q Consensus 150 ~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDl-ktge~V~tL~f~-S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~l 224 (994)
.+.+|+|||+ ..+.++++++-| ..|++++|++ ++|++|. |+.|+|||+.+++++
T Consensus 223 ---------------------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~ 281 (456)
T KOG0266|consen 223 ---------------------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECV 281 (456)
T ss_pred ---------------------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEE
Confidence 2479999999 566899999755 6899999998 4666655 568999999999999
Q ss_pred EEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhh
Q 001935 225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ 304 (994)
Q Consensus 225 ~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~ 304 (994)
..+..|..+ ...+ +|.. ++..+
T Consensus 282 ~~l~~hs~~-------------is~~-------~f~~---------------------------d~~~l----------- 303 (456)
T KOG0266|consen 282 RKLKGHSDG-------------ISGL-------AFSP---------------------------DGNLL----------- 303 (456)
T ss_pred EeeeccCCc-------------eEEE-------EECC---------------------------CCCEE-----------
Confidence 998887552 1112 2222 11111
Q ss_pred hhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc--EEEEeccCCCC--eEEEEECCC
Q 001935 305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSP--ISALCFDPS 380 (994)
Q Consensus 305 la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~--~i~~~~aHtsp--IsaLaFSPd 380 (994)
++++.||.|+|||+.++. ++..+..|..+ ++.++|+|+
T Consensus 304 --------------------------------------~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~ 345 (456)
T KOG0266|consen 304 --------------------------------------VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPN 345 (456)
T ss_pred --------------------------------------EEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCC
Confidence 234679999999999998 67888888766 999999999
Q ss_pred CCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc--cEEEEEEccCCCEEEEEeCCCeEEEE
Q 001935 381 GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA--TIQDICFSHYSQWIAIVSSKGTCHVF 458 (994)
Q Consensus 381 GtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a--~I~sIaFSpDg~~LAsgS~dGTVhIw 458 (994)
|.+|+++..++ .+++|++.. + ..+..+ +|+... .+.+..++++++|+.+|+.|++|++|
T Consensus 346 ~~~ll~~~~d~-~~~~w~l~~-------~----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~ 406 (456)
T KOG0266|consen 346 GKYLLSASLDR-TLKLWDLRS-------G----------KSVGTY-TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVW 406 (456)
T ss_pred CcEEEEecCCC-eEEEEEccC-------C----------cceeee-cccCCcceeEecccccCCCCeEEEEeCCceEEEE
Confidence 99999999954 599999963 2 122222 444443 56777789999999999999999999
Q ss_pred ecCCCCCCcccccc
Q 001935 459 VLSPFGGDSGFQTL 472 (994)
Q Consensus 459 ~I~~~gg~~~~~~H 472 (994)
++........+..|
T Consensus 407 ~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 407 DSSSGGILQRLEGH 420 (456)
T ss_pred eCCccchhhhhcCC
Confidence 99986665666667
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=6.9e-16 Score=180.40 Aligned_cols=325 Identities=16% Similarity=0.163 Sum_probs=194.1
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcc-eEeeeeccCCEEEEEEecCCCCCCCCCCccc-c
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF-NELVSKRDGPVSFLQMQPFPVKDDGCEGFRK-L 129 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v-~ells~hdGpV~~v~~lP~p~~s~~~D~F~~-s 129 (994)
-+|-|.|.|..|-. +.++|++|..+- .+||+++...++ ...+.+|.++|-...|-.+... -|-- +
T Consensus 142 ~g~fddi~si~Ws~-------DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~-----l~tvsk 209 (893)
T KOG0291|consen 142 LGHFDDITSIDWSD-------DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLD-----LYTVSK 209 (893)
T ss_pred cCCccceeEEEecc-------CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcce-----EEEEec
Confidence 45667788877753 678999988875 899999776553 4567788777766555433210 0000 0
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcC---CCCCCCCCCCCEEEEEECCCCeEEEEEeCC---CcEEEEEecC-
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMD---SQSGNCVNSPTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP- 202 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d---~~~~~~~~sp~tVrLWDlktge~V~tL~f~---S~V~sV~~S~- 202 (994)
.-+|.++.++..+.. +... .--.+|.-| ..++.- .-.++ +|-. .+.+-|. +.|.+.+|++
T Consensus 210 dG~l~~W~~~~~P~~---~~~~--~kd~eg~~d~~~~~~~Ee--k~~~~-~~~k-----~~k~~ln~~~~kvtaa~fH~~ 276 (893)
T KOG0291|consen 210 DGALFVWTCDLRPPE---LDKA--EKDEEGSDDEEMDEDGEE--KTHKI-FWYK-----TKKHYLNQNSSKVTAAAFHKG 276 (893)
T ss_pred CceEEEEEecCCCcc---cccc--cccccccccccccccchh--hhcce-EEEE-----EEeeeecccccceeeeeccCC
Confidence 113444444311000 0000 000001000 000000 00111 1211 1111122 6889999998
Q ss_pred -CeEEEEeCCe-EEEEECCCCceeEEEeecCCccccCCCccccccCccceEEc--ccEEEEccCC---eeeccCC----c
Q 001935 203 -RIVAVGLATQ-IYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG--PRWLAYASNT---LLLSNSG----R 271 (994)
Q Consensus 203 -~iLAVgl~~~-I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlg--pRwLAyas~~---~~iwd~G----~ 271 (994)
++|||+.... +++|.+..+.+++.+.-...+ ...+++. ..|||++... +.+|..- .
T Consensus 277 t~~lvvgFssG~f~LyelP~f~lih~LSis~~~-------------I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV 343 (893)
T KOG0291|consen 277 TNLLVVGFSSGEFGLYELPDFNLIHSLSISDQK-------------ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV 343 (893)
T ss_pred ceEEEEEecCCeeEEEecCCceEEEEeecccce-------------eeEEEecccCCEEEEcCCccceEEEEEeecccee
Confidence 6899998765 669999999999988743332 2346666 4899999864 5667520 0
Q ss_pred cCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeE
Q 001935 272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351 (994)
Q Consensus 272 ~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V 351 (994)
+-.|.+-+...++.+| |+++ .++++..||.|
T Consensus 344 lKQQgH~~~i~~l~YS---------------------------------------------pDgq----~iaTG~eDgKV 374 (893)
T KOG0291|consen 344 LKQQGHSDRITSLAYS---------------------------------------------PDGQ----LIATGAEDGKV 374 (893)
T ss_pred eeccccccceeeEEEC---------------------------------------------CCCc----EEEeccCCCcE
Confidence 0111111111122222 2222 23577899999
Q ss_pred EEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCc-----ccCCCC---CCccc---------
Q 001935 352 VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC-----MRSGSG---NHKYD--------- 414 (994)
Q Consensus 352 ~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~-----~~~~sG---~~~~~--------- 414 (994)
+|||..++-++.+|..|++.|++++|+..|+.|+++|-||+ +|.||+...- .....- +...|
T Consensus 375 KvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGt-VRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG 453 (893)
T KOG0291|consen 375 KVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT-VRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAG 453 (893)
T ss_pred EEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCe-EEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEee
Confidence 99999999999999999999999999999999999999988 8999997541 000000 00001
Q ss_pred ---------cCC-cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCc
Q 001935 415 ---------WNS-SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 467 (994)
Q Consensus 415 ---------~~~-s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~ 467 (994)
|+- +++.|-.| .|| .++|.+++|+|++..||++|-|.||++|++-...+.+
T Consensus 454 ~~d~F~IfvWS~qTGqllDiL-sGH-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v 514 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQLLDIL-SGH-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV 514 (893)
T ss_pred ccceEEEEEEEeecCeeeehh-cCC-CCcceeeEEccccCeEEeccccceEEEEEeeccCcee
Confidence 111 11122222 353 4789999999999999999999999999996654443
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.74 E-value=7.7e-17 Score=180.97 Aligned_cols=215 Identities=17% Similarity=0.234 Sum_probs=149.7
Q ss_pred CCEEEEEECCCCeEEEEEeC-CCcEEEEEecCC--eEE-EEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCc
Q 001935 172 PTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR--IVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f-~S~V~sV~~S~~--iLA-Vgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~ 247 (994)
++.+|||+. .|..+.+|.+ +.+|.++++|.+ .|+ .+-++++.+||+.+++..+.+.-+..|
T Consensus 256 ~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~-------------- 320 (524)
T KOG0273|consen 256 DGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP-------------- 320 (524)
T ss_pred CcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC--------------
Confidence 478999997 5667788865 579999999983 455 455778999999988877666555442
Q ss_pred cceEEcccEEE---EccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCC
Q 001935 248 GPMAVGPRWLA---YASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (994)
Q Consensus 248 gplAlgpRwLA---yas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~ 324 (994)
++...|.. |+.. ++++.-.|.+... .+=.+++.++-.
T Consensus 321 ---~lDVdW~~~~~F~ts------------------------~td~~i~V~kv~~-------~~P~~t~~GH~g------ 360 (524)
T KOG0273|consen 321 ---ALDVDWQSNDEFATS------------------------STDGCIHVCKVGE-------DRPVKTFIGHHG------ 360 (524)
T ss_pred ---ccceEEecCceEeec------------------------CCCceEEEEEecC-------CCcceeeecccC------
Confidence 11122221 1110 0010011111100 000133333321
Q ss_pred CCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC---------CEEEEEEcCCCeEE
Q 001935 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG---------TLLVTASVYGNNIN 395 (994)
Q Consensus 325 s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdG---------tlLATAS~dGt~Ir 395 (994)
.++.+-+++.++ .+++++.|++++||..........|.+|...|..+.++|+| ..||+++.+++ ++
T Consensus 361 ~V~alk~n~tg~----LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~ 435 (524)
T KOG0273|consen 361 EVNALKWNPTGS----LLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VK 435 (524)
T ss_pred ceEEEEECCCCc----eEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EE
Confidence 122233333333 45689999999999999999999999999999999999987 67999999665 99
Q ss_pred EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 396 Vwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
+||+.. | ++++.|.+ |+.+|++++|||||+|||+|+.||-||||++..++-
T Consensus 436 lwdv~~-------g----------v~i~~f~k--H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 436 LWDVES-------G----------VPIHTLMK--HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred EEEccC-------C----------ceeEeecc--CCCceEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence 999964 4 68999976 467899999999999999999999999999887654
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.74 E-value=2e-16 Score=184.54 Aligned_cols=189 Identities=22% Similarity=0.294 Sum_probs=144.7
Q ss_pred CCEEEEEECCCCe--EEEEE-eCCCcEEEEEecC--CeEEEEe-CCeEEEEEC-CCCceeEEEeecCCccccCCCccccc
Q 001935 172 PTAVRFYSFQSHC--YEHVL-RFRSSVCMVRCSP--RIVAVGL-ATQIYCFDA-LTLENKFSVLTYPVPQLAGQGAVGIN 244 (994)
Q Consensus 172 p~tVrLWDlktge--~V~tL-~f~S~V~sV~~S~--~iLAVgl-~~~I~IwDa-~Tle~l~tL~t~p~p~~~~~g~~~vn 244 (994)
++++++|++.+.+ ..+++ .+...|.+++|++ ++|+.+. |.+|+|||+ ....+++++.+|+.+
T Consensus 180 ~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~----------- 248 (456)
T KOG0266|consen 180 DGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY----------- 248 (456)
T ss_pred CCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc-----------
Confidence 4789999998777 66666 3456899999988 4666655 458999999 455788888888763
Q ss_pred cCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCC
Q 001935 245 VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (994)
Q Consensus 245 v~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~ 324 (994)
...++| . |.+ .+
T Consensus 249 --v~~~~f-------~---------------------------p~g-~~------------------------------- 260 (456)
T KOG0266|consen 249 --VTSVAF-------S---------------------------PDG-NL------------------------------- 260 (456)
T ss_pred --eEEEEe-------c---------------------------CCC-CE-------------------------------
Confidence 111222 1 221 11
Q ss_pred CCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcc
Q 001935 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 404 (994)
Q Consensus 325 s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~ 404 (994)
+++++.|++|+|||+.+++++..|.+|..+|++++|+++|.+|+++|.||. |+|||+..
T Consensus 261 -----------------i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~-i~vwd~~~--- 319 (456)
T KOG0266|consen 261 -----------------LVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT-IRVWDLET--- 319 (456)
T ss_pred -----------------EEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc-EEEEECCC---
Confidence 235678999999999999999999999999999999999999999988555 99999863
Q ss_pred cCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccccccc
Q 001935 405 RSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (994)
Q Consensus 405 ~~~sG~~~~~~~~s~~~l~~L~RG~t~a-~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~ 473 (994)
|. .+++..+. +.... .++++.|+|++++|++++.|+++++|++...........|.
T Consensus 320 ----~~--------~~~~~~~~-~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~ 376 (456)
T KOG0266|consen 320 ----GS--------KLCLKLLS-GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHS 376 (456)
T ss_pred ----Cc--------eeeeeccc-CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccC
Confidence 20 00334444 33444 79999999999999999999999999998776666666664
No 28
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.74 E-value=2e-15 Score=186.86 Aligned_cols=247 Identities=14% Similarity=0.099 Sum_probs=167.2
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC---Ccce--Eee-eeccCCEEEEEEecCCCCCCCCCC
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA---SNFN--ELV-SKRDGPVSFLQMQPFPVKDDGCEG 125 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~---g~v~--ell-s~hdGpV~~v~~lP~p~~s~~~D~ 125 (994)
..|.+.|.-+.|+. ++++|++|..+| ++|||++.. +... .++ -.+...|..+.+.|..
T Consensus 480 ~~~~~~V~~i~fs~-------dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-------- 544 (793)
T PLN00181 480 LNSSNLVCAIGFDR-------DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYI-------- 544 (793)
T ss_pred cCCCCcEEEEEECC-------CCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCC--------
Confidence 34777888888874 456777777665 999997431 1000 001 1123456666665421
Q ss_pred ccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--
Q 001935 126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-- 202 (994)
Q Consensus 126 F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~-- 202 (994)
..+||..+ .+++|+|||+.+++.+..++.+ ..|++|++++
T Consensus 545 ----~~~las~~---------------------------------~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~ 587 (793)
T PLN00181 545 ----KSQVASSN---------------------------------FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSAD 587 (793)
T ss_pred ----CCEEEEEe---------------------------------CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCC
Confidence 13555421 2478999999999999988654 6899999985
Q ss_pred -CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCC
Q 001935 203 -RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (994)
Q Consensus 203 -~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~ 280 (994)
.+|+++. ++.|++||+.+.+.+.++..+.. .+ .++|..
T Consensus 588 ~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~----------------v~-----~v~~~~------------------- 627 (793)
T PLN00181 588 PTLLASGSDDGSVKLWSINQGVSIGTIKTKAN----------------IC-----CVQFPS------------------- 627 (793)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEEEEEecCCC----------------eE-----EEEEeC-------------------
Confidence 4666655 56899999998877666543211 01 111211
Q ss_pred CCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 001935 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (994)
Q Consensus 281 ~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~ 360 (994)
.++. .++.++.||.|++||+.+.+
T Consensus 628 --------~~g~------------------------------------------------~latgs~dg~I~iwD~~~~~ 651 (793)
T PLN00181 628 --------ESGR------------------------------------------------SLAFGSADHKVYYYDLRNPK 651 (793)
T ss_pred --------CCCC------------------------------------------------EEEEEeCCCeEEEEECCCCC
Confidence 0011 12245689999999998765
Q ss_pred -EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 001935 361 -IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (994)
Q Consensus 361 -~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaF 439 (994)
.+..+.+|..+|.+++|. +|.+|+|++.||+ |+|||+..... + .....++.+ .|+ ...|.+++|
T Consensus 652 ~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~----~-------~~~~~l~~~-~gh-~~~i~~v~~ 716 (793)
T PLN00181 652 LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSIS----G-------INETPLHSF-MGH-TNVKNFVGL 716 (793)
T ss_pred ccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCcc----c-------cCCcceEEE-cCC-CCCeeEEEE
Confidence 567889999999999997 7889999999765 99999853100 0 001245555 354 456899999
Q ss_pred ccCCCEEEEEeCCCeEEEEecCC
Q 001935 440 SHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 440 SpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
+|++++||+|+.||+|+||+...
T Consensus 717 s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 717 SVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred cCCCCEEEEEeCCCEEEEEECCC
Confidence 99999999999999999999653
No 29
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.73 E-value=7.9e-16 Score=164.38 Aligned_cols=227 Identities=15% Similarity=0.202 Sum_probs=161.9
Q ss_pred CCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCC
Q 001935 73 VFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (994)
Q Consensus 73 ~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~ 151 (994)
++++..+.|..++ +++||+. +++....|.+|.--|-.++|.|+. | . +|++.
T Consensus 73 ~dg~~alS~swD~~lrlWDl~-~g~~t~~f~GH~~dVlsva~s~dn------------~-q--ivSGS------------ 124 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLA-TGESTRRFVGHTKDVLSVAFSTDN------------R-Q--IVSGS------------ 124 (315)
T ss_pred cCCceEEeccccceEEEEEec-CCcEEEEEEecCCceEEEEecCCC------------c-e--eecCC------------
Confidence 3667777776666 8999995 578889999999999999999864 1 2 23321
Q ss_pred CccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC--CCcEEEEEecCC----eEEE-EeCCeEEEEECCCCcee
Q 001935 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSPR----IVAV-GLATQIYCFDALTLENK 224 (994)
Q Consensus 152 ~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f--~S~V~sV~~S~~----iLAV-gl~~~I~IwDa~Tle~l 224 (994)
-++++++||...+......+. +..|.+|+|+|+ +|+. +.|+.+++||+.+.+..
T Consensus 125 -------------------rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~ 185 (315)
T KOG0279|consen 125 -------------------RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR 185 (315)
T ss_pred -------------------CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh
Confidence 258999999987665544444 568999999995 4554 55668999999998877
Q ss_pred EEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhh
Q 001935 225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ 304 (994)
Q Consensus 225 ~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~ 304 (994)
.++..|..- .+.++++ |+ |++
T Consensus 186 ~~~~gh~~~-------------v~t~~vS----------------------------------pD-Gsl----------- 206 (315)
T KOG0279|consen 186 TTFIGHSGY-------------VNTVTVS----------------------------------PD-GSL----------- 206 (315)
T ss_pred hcccccccc-------------EEEEEEC----------------------------------CC-CCE-----------
Confidence 666554320 1122222 12 111
Q ss_pred hhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEE
Q 001935 305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLL 384 (994)
Q Consensus 305 la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlL 384 (994)
.++++.||.+.+||+..++.+-.| .|..+|.+|+|+|+--.|
T Consensus 207 -------------------------------------casGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL 248 (315)
T KOG0279|consen 207 -------------------------------------CASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWL 248 (315)
T ss_pred -------------------------------------EecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeE
Confidence 124678999999999999886555 467899999999997777
Q ss_pred EEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---ccc----ccccEEEEEEccCCCEEEEEeCCCeEEE
Q 001935 385 VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGI----TSATIQDICFSHYSQWIAIVSSKGTCHV 457 (994)
Q Consensus 385 ATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~---RG~----t~a~I~sIaFSpDg~~LAsgS~dGTVhI 457 (994)
+.|- ++.|+||++.+. ..+.+|+ -|. ....-.++|||+||+.|.+|-.|+.|++
T Consensus 249 ~~at--~~sIkIwdl~~~-----------------~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv 309 (315)
T KOG0279|consen 249 CAAT--ATSIKIWDLESK-----------------AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRV 309 (315)
T ss_pred eecc--CCceEEEeccch-----------------hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEE
Confidence 6555 577999999652 1222221 111 0123467999999999999999999999
Q ss_pred EecCC
Q 001935 458 FVLSP 462 (994)
Q Consensus 458 w~I~~ 462 (994)
|.+..
T Consensus 310 ~qv~~ 314 (315)
T KOG0279|consen 310 WQVAK 314 (315)
T ss_pred EEeec
Confidence 99854
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.71 E-value=2.7e-17 Score=178.83 Aligned_cols=229 Identities=18% Similarity=0.223 Sum_probs=167.6
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEec-CcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEE
Q 001935 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (994)
Q Consensus 55 ~kd~V~wa~Fd~le~~~~~~~~vL~lGy~-~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLL 133 (994)
..+.|....+|. ..++.|.. +.++|||.++ -.+..+|.+|.|.|-|+++- .| |
T Consensus 196 ~skgVYClQYDD---------~kiVSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd--------------~r--v 249 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---------EKIVSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYD--------------ER--V 249 (499)
T ss_pred cCCceEEEEecc---------hhhhcccccCceEEecccc-HHHHHhhhcCCCcEEeeecc--------------ce--E
Confidence 445677777762 35666665 5799999954 56778999999999999865 11 3
Q ss_pred EEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEeCC-
Q 001935 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLAT- 211 (994)
Q Consensus 134 AvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~~iLAVgl~~- 211 (994)
+ ++|. ++.||++||+.+|+++++|-++ ..|+.++|+..+++.+..+
T Consensus 250 i-isGS-------------------------------SDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDr 297 (499)
T KOG0281|consen 250 I-VSGS-------------------------------SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDR 297 (499)
T ss_pred E-EecC-------------------------------CCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCc
Confidence 3 3431 3579999999999999998665 6899999999988887755
Q ss_pred eEEEEECCCCcee---EEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCC
Q 001935 212 QIYCFDALTLENK---FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (994)
Q Consensus 212 ~I~IwDa~Tle~l---~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp 288 (994)
.|.+||+.....+ +.|.+|-. .+ +.+.+.
T Consensus 298 siaVWdm~sps~it~rrVLvGHrA---------aV----NvVdfd----------------------------------- 329 (499)
T KOG0281|consen 298 SIAVWDMASPTDITLRRVLVGHRA---------AV----NVVDFD----------------------------------- 329 (499)
T ss_pred eeEEEeccCchHHHHHHHHhhhhh---------he----eeeccc-----------------------------------
Confidence 7999997643210 11111100 00 000000
Q ss_pred CCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 001935 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH 368 (994)
Q Consensus 289 ~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aH 368 (994)
.| .+.+++.|.+|++|++.+++.+.++.+|
T Consensus 330 ----------------------------------------------~k----yIVsASgDRTikvW~~st~efvRtl~gH 359 (499)
T KOG0281|consen 330 ----------------------------------------------DK----YIVSASGDRTIKVWSTSTCEFVRTLNGH 359 (499)
T ss_pred ----------------------------------------------cc----eEEEecCCceEEEEeccceeeehhhhcc
Confidence 01 1235678999999999999999999999
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 001935 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (994)
Q Consensus 369 tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs 448 (994)
...|.|+.+ .|++++++|.| .+||+||+.. | .+|..| .|+ ..-|.+|-|. .+.|++
T Consensus 360 kRGIAClQY--r~rlvVSGSSD-ntIRlwdi~~-------G----------~cLRvL-eGH-EeLvRciRFd--~krIVS 415 (499)
T KOG0281|consen 360 KRGIACLQY--RDRLVVSGSSD-NTIRLWDIEC-------G----------ACLRVL-EGH-EELVRCIRFD--NKRIVS 415 (499)
T ss_pred cccceehhc--cCeEEEecCCC-ceEEEEeccc-------c----------HHHHHH-hch-HHhhhheeec--Cceeee
Confidence 999999887 68999999994 5699999963 4 466666 454 3568999995 689999
Q ss_pred EeCCCeEEEEecCCC
Q 001935 449 VSSKGTCHVFVLSPF 463 (994)
Q Consensus 449 gS~dGTVhIw~I~~~ 463 (994)
|.-||+|+||++...
T Consensus 416 GaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 416 GAYDGKIKVWDLQAA 430 (499)
T ss_pred ccccceEEEEecccc
Confidence 999999999999764
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.71 E-value=4.2e-15 Score=151.51 Aligned_cols=243 Identities=20% Similarity=0.229 Sum_probs=163.1
Q ss_pred EeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEE
Q 001935 99 ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFY 178 (994)
Q Consensus 99 ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLW 178 (994)
..+..|.++|.++.+.|++ .+|++.. .++.|++|
T Consensus 3 ~~~~~h~~~i~~~~~~~~~-------------~~l~~~~---------------------------------~~g~i~i~ 36 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDG-------------KLLATGS---------------------------------GDGTIKVW 36 (289)
T ss_pred hHhcccCCCEEEEEEcCCC-------------CEEEEee---------------------------------cCcEEEEE
Confidence 3455788999999998764 3556422 13689999
Q ss_pred ECCCCeEEEEEeCC-CcEEEEEecCC--eEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc
Q 001935 179 SFQSHCYEHVLRFR-SSVCMVRCSPR--IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP 254 (994)
Q Consensus 179 Dlktge~V~tL~f~-S~V~sV~~S~~--iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp 254 (994)
++.+++.+..+..+ ..|..+.+.+. .|+++. ++.|++||+.+.+.+..+..+..+ ...+++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-------------i~~~~~~~ 103 (289)
T cd00200 37 DLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY-------------VSSVAFSP 103 (289)
T ss_pred EeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCc-------------EEEEEEcC
Confidence 99999877777654 57778888873 566655 778999999987766666654321 12345555
Q ss_pred --cEEEEcc--CCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCcc
Q 001935 255 --RWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS 330 (994)
Q Consensus 255 --RwLAyas--~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s 330 (994)
++++.++ ..+.+|+... +.... .+..+ ......+.
T Consensus 104 ~~~~~~~~~~~~~i~~~~~~~-------------------~~~~~----------------~~~~~------~~~i~~~~ 142 (289)
T cd00200 104 DGRILSSSSRDKTIKVWDVET-------------------GKCLT----------------TLRGH------TDWVNSVA 142 (289)
T ss_pred CCCEEEEecCCCeEEEEECCC-------------------cEEEE----------------EeccC------CCcEEEEE
Confidence 5665554 2355665310 00000 00000 00000111
Q ss_pred CCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCC
Q 001935 331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410 (994)
Q Consensus 331 ~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~ 410 (994)
+++... .++.+..+|.|.+||+.+++.+..+..|..+|.+++|+|+|+.|++++.+|. |++|++.. +
T Consensus 143 ~~~~~~----~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~-------~- 209 (289)
T cd00200 143 FSPDGT----FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLST-------G- 209 (289)
T ss_pred EcCcCC----EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCC-------C-
Confidence 112111 1234456999999999999999999999999999999999999999998665 99999853 2
Q ss_pred CccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 411 ~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
..+..+. + +...|.+++|+||+.++++++.+|++++|++.....
T Consensus 210 ---------~~~~~~~-~-~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~ 253 (289)
T cd00200 210 ---------KCLGTLR-G-HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC 253 (289)
T ss_pred ---------ceecchh-h-cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee
Confidence 2333332 2 334799999999999999999899999999976443
No 32
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.70 E-value=7.3e-16 Score=168.59 Aligned_cols=238 Identities=16% Similarity=0.232 Sum_probs=185.1
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
.+|...|..+.|| |..+.+++|..++ ++|||+ .+|.+.-+|.+|-..|+.|++++ .+|
T Consensus 148 ~gHlgWVr~vavd-------P~n~wf~tgs~DrtikIwDl-atg~LkltltGhi~~vr~vavS~-------------rHp 206 (460)
T KOG0285|consen 148 SGHLGWVRSVAVD-------PGNEWFATGSADRTIKIWDL-ATGQLKLTLTGHIETVRGVAVSK-------------RHP 206 (460)
T ss_pred hhccceEEEEeeC-------CCceeEEecCCCceeEEEEc-ccCeEEEeecchhheeeeeeecc-------------cCc
Confidence 3455666666666 3468999998876 899999 47889999999999999999774 468
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEE
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG 208 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--~iLAVg 208 (994)
+|..+ ++ ++.|+-|||...+.|+.+-.+ +.|++++..| ++|+.+
T Consensus 207 YlFs~-ge--------------------------------dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~ 253 (460)
T KOG0285|consen 207 YLFSA-GE--------------------------------DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTG 253 (460)
T ss_pred eEEEe-cC--------------------------------CCeeEEEechhhhhHHHhccccceeEEEeccccceeEEec
Confidence 87743 22 368999999999998877544 8999999998 567765
Q ss_pred e-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcC
Q 001935 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (994)
Q Consensus 209 l-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stS 287 (994)
. |..|++||++|...++++.+|.+|.+ .+.+. +
T Consensus 254 grDst~RvWDiRtr~~V~~l~GH~~~V~-------------~V~~~------~--------------------------- 287 (460)
T KOG0285|consen 254 GRDSTIRVWDIRTRASVHVLSGHTNPVA-------------SVMCQ------P--------------------------- 287 (460)
T ss_pred CCcceEEEeeecccceEEEecCCCCcce-------------eEEee------c---------------------------
Confidence 4 55899999999999999988876410 00000 0
Q ss_pred CCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 001935 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (994)
Q Consensus 288 p~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a 367 (994)
.+| ++.+++.|++|++||+..++...++..
T Consensus 288 -------------------------------------------~dp-------qvit~S~D~tvrlWDl~agkt~~tlt~ 317 (460)
T KOG0285|consen 288 -------------------------------------------TDP-------QVITGSHDSTVRLWDLRAGKTMITLTH 317 (460)
T ss_pred -------------------------------------------CCC-------ceEEecCCceEEEeeeccCceeEeeec
Confidence 000 123567899999999999999999999
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 001935 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (994)
Q Consensus 368 HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LA 447 (994)
|...|.||+.+|.-.++|+||.| +|+-|++ |. | ..+..|. | +++.|..++-..|+ +++
T Consensus 318 hkksvral~lhP~e~~fASas~d--nik~w~~-p~------g----------~f~~nls-g-h~~iintl~~nsD~-v~~ 375 (460)
T KOG0285|consen 318 HKKSVRALCLHPKENLFASASPD--NIKQWKL-PE------G----------EFLQNLS-G-HNAIINTLSVNSDG-VLV 375 (460)
T ss_pred ccceeeEEecCCchhhhhccCCc--cceeccC-Cc------c----------chhhccc-c-ccceeeeeeeccCc-eEE
Confidence 99999999999999999999983 5999998 42 3 3444543 4 46789999998775 778
Q ss_pred EEeCCCeEEEEecCC
Q 001935 448 IVSSKGTCHVFVLSP 462 (994)
Q Consensus 448 sgS~dGTVhIw~I~~ 462 (994)
+|+++|++..|+-..
T Consensus 376 ~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 376 SGGDNGSIMFWDWKS 390 (460)
T ss_pred EcCCceEEEEEecCc
Confidence 999999999999765
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.70 E-value=1e-15 Score=180.47 Aligned_cols=243 Identities=17% Similarity=0.224 Sum_probs=170.4
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcE
Q 001935 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (994)
Q Consensus 54 ~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpL 132 (994)
+|.+.|.-+.|. |++++|+.+..++ +|+|+++. -.+.-+.++|..||.+|+|.|.+ -+
T Consensus 449 GH~GPVyg~sFs-------Pd~rfLlScSED~svRLWsl~t-~s~~V~y~GH~~PVwdV~F~P~G-------------yY 507 (707)
T KOG0263|consen 449 GHSGPVYGCSFS-------PDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKGHLAPVWDVQFAPRG-------------YY 507 (707)
T ss_pred cCCCceeeeeec-------ccccceeeccCCcceeeeeccc-ceeEEEecCCCcceeeEEecCCc-------------eE
Confidence 466677777774 5789999999865 89999964 55666778999999999999865 23
Q ss_pred EEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe
Q 001935 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL 209 (994)
Q Consensus 133 LAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--~iLAVgl 209 (994)
.|..+ .+++.++|+.......+.+..+ +-|-+++|.| .+++.|.
T Consensus 508 Fatas---------------------------------~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGS 554 (707)
T KOG0263|consen 508 FATAS---------------------------------HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGS 554 (707)
T ss_pred EEecC---------------------------------CCceeeeeecccCCchhhhcccccccceEEECCcccccccCC
Confidence 45321 1478899999887777777554 6888899988 5788866
Q ss_pred CC-eEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCC
Q 001935 210 AT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (994)
Q Consensus 210 ~~-~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp 288 (994)
.+ ++++||+.++..++.+.+|..| ...++ |+.
T Consensus 555 sD~tVRlWDv~~G~~VRiF~GH~~~-------------V~al~-------~Sp--------------------------- 587 (707)
T KOG0263|consen 555 SDRTVRLWDVSTGNSVRIFTGHKGP-------------VTALA-------FSP--------------------------- 587 (707)
T ss_pred CCceEEEEEcCCCcEEEEecCCCCc-------------eEEEE-------EcC---------------------------
Confidence 54 6999999999888877776553 11222 222
Q ss_pred CCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 001935 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH 368 (994)
Q Consensus 289 ~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aH 368 (994)
.+. .+++++.||.|.|||+.+++.+.++++|
T Consensus 588 ~Gr-------------------------------------------------~LaSg~ed~~I~iWDl~~~~~v~~l~~H 618 (707)
T KOG0263|consen 588 CGR-------------------------------------------------YLASGDEDGLIKIWDLANGSLVKQLKGH 618 (707)
T ss_pred CCc-------------------------------------------------eEeecccCCcEEEEEcCCCcchhhhhcc
Confidence 111 1235678999999999999999999999
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCc-------cccCCcceEEEEEecccccccEEEEEEcc
Q 001935 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK-------YDWNSSHVHLYKLHRGITSATIQDICFSH 441 (994)
Q Consensus 369 tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~-------~~~~~s~~~l~~L~RG~t~a~I~sIaFSp 441 (994)
++.|.+|.||+||..||+++. |+.|++||+.........+..+ ....++..++-.+.. +..+|..|.|.-
T Consensus 619 t~ti~SlsFS~dg~vLasgg~-DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~t--K~tpv~~l~Ftr 695 (707)
T KOG0263|consen 619 TGTIYSLSFSRDGNVLASGGA-DNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYT--KNTPVVGLHFTR 695 (707)
T ss_pred cCceeEEEEecCCCEEEecCC-CCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeee--cCceEEEEEEec
Confidence 999999999999999999999 6779999986432110000000 001112234444432 233688888887
Q ss_pred CCCEEEEE
Q 001935 442 YSQWIAIV 449 (994)
Q Consensus 442 Dg~~LAsg 449 (994)
-.-.||+|
T Consensus 696 rNl~L~~g 703 (707)
T KOG0263|consen 696 RNLLLAVG 703 (707)
T ss_pred cceeEEec
Confidence 65455544
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.69 E-value=1.1e-16 Score=177.21 Aligned_cols=246 Identities=16% Similarity=0.227 Sum_probs=165.4
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCC
Q 001935 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (994)
Q Consensus 74 ~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~ 152 (994)
.++-|++|.+.| |-+|+.. .=++..++..||.+|+++++++++ ..+| ++|.
T Consensus 107 eGRRLltgs~SGEFtLWNg~-~fnFEtilQaHDs~Vr~m~ws~~g--------------~wmi-SgD~------------ 158 (464)
T KOG0284|consen 107 EGRRLLTGSQSGEFTLWNGT-SFNFETILQAHDSPVRTMKWSHNG--------------TWMI-SGDK------------ 158 (464)
T ss_pred CCceeEeecccccEEEecCc-eeeHHHHhhhhcccceeEEEccCC--------------CEEE-EcCC------------
Confidence 455566666666 9999983 445677889999999999999765 2343 4432
Q ss_pred ccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE-eCC-CcEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEE
Q 001935 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL-RFR-SSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSV 227 (994)
Q Consensus 153 ~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL-~f~-S~V~sV~~S~---~iLAVgl~~~I~IwDa~Tle~l~tL 227 (994)
++.|++|+..-.. |+.+ .++ ..|++++|++ +++.++.|+.|+|||..-.+....|
T Consensus 159 -------------------gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL 218 (464)
T KOG0284|consen 159 -------------------GGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL 218 (464)
T ss_pred -------------------CceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee
Confidence 3689999885433 3444 344 6899999998 4666777789999998766655545
Q ss_pred eecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhc
Q 001935 228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (994)
Q Consensus 228 ~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~ 307 (994)
.+|-- - ++.++ |+ |. ..
T Consensus 219 ~GHgw---------------d-----Vksvd--------WH-------------------P~-kg--------------- 235 (464)
T KOG0284|consen 219 RGHGW---------------D-----VKSVD--------WH-------------------PT-KG--------------- 235 (464)
T ss_pred ccCCC---------------C-----cceec--------cC-------------------Cc-cc---------------
Confidence 43311 0 01011 11 00 00
Q ss_pred ccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEE
Q 001935 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTA 387 (994)
Q Consensus 308 Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATA 387 (994)
.+++++.|..|++||..++++++++.+|+..|.++.|+|+|.+|+|+
T Consensus 236 ---------------------------------LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~ 282 (464)
T KOG0284|consen 236 ---------------------------------LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTG 282 (464)
T ss_pred ---------------------------------eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEc
Confidence 12355677799999999999999999999999999999999999999
Q ss_pred EcCCCeEEEEeCCCCc----ccC-----CCCC---------CccccCCcceE--EE------EEecccccccEEEEEEcc
Q 001935 388 SVYGNNINIFRIMPSC----MRS-----GSGN---------HKYDWNSSHVH--LY------KLHRGITSATIQDICFSH 441 (994)
Q Consensus 388 S~dGt~IrVwdi~p~~----~~~-----~sG~---------~~~~~~~s~~~--l~------~L~RG~t~a~I~sIaFSp 441 (994)
|. ++.++|||+..-. ..+ ...+ ++..+.++..+ +. ..--+ +...||+++|.|
T Consensus 283 sk-D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~A-Hd~~iwsl~~hP 360 (464)
T KOG0284|consen 283 SK-DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPA-HDGEIWSLAYHP 360 (464)
T ss_pred cC-CceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcc-cccceeeeeccc
Confidence 99 6789999996210 000 0000 00011121111 11 01112 223599999999
Q ss_pred CCCEEEEEeCCCeEEEEecCCCCC
Q 001935 442 YSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 442 Dg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
=|..||+|+.|.|++.|.-...+.
T Consensus 361 lGhil~tgsnd~t~rfw~r~rp~d 384 (464)
T KOG0284|consen 361 LGHILATGSNDRTVRFWTRNRPGD 384 (464)
T ss_pred cceeEeecCCCcceeeeccCCCCC
Confidence 999999999999999998765544
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=2.3e-15 Score=176.03 Aligned_cols=114 Identities=14% Similarity=0.177 Sum_probs=102.5
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceE
Q 001935 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~ 421 (994)
++++++|.+++||++..+..+.+|.+|+..|.++.|+|..++|||+|.|.| |+||.|.. . .+
T Consensus 478 iAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~-------f----------SC 539 (775)
T KOG0319|consen 478 IATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSIST-------F----------SC 539 (775)
T ss_pred EEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEecc-------c----------ee
Confidence 457889999999999999999999999999999999999999999999655 99999964 2 48
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcccccccCC
Q 001935 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ 475 (994)
Q Consensus 422 l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~s~ 475 (994)
+.+|. |++ +.|..++|-.+++.|.+++.||-++||++....+..++..|+..
T Consensus 540 lkT~e-GH~-~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr 591 (775)
T KOG0319|consen 540 LKTFE-GHT-SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR 591 (775)
T ss_pred eeeec-Ccc-ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccce
Confidence 88884 655 55999999999999999999999999999999999999999753
No 36
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.68 E-value=5.7e-16 Score=163.30 Aligned_cols=199 Identities=23% Similarity=0.296 Sum_probs=150.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
.-.||--|..+.|++ +...|++|.... +||||++....-.+-+++|.+.|+.+.+.-. .+
T Consensus 96 sf~hkhivk~~af~~-------ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e------------D~ 156 (334)
T KOG0278|consen 96 SFEHKHIVKAVAFSQ-------DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE------------DK 156 (334)
T ss_pred hhhhhheeeeEEecc-------cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc------------Cc
Confidence 345788899999997 455677776655 7999997655555667889999999887621 11
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEE
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG 208 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVg 208 (994)
.++. +. .+++||+||.++|+.+++|.|+++|.++..++ ++|.++
T Consensus 157 -~iLS-Sa--------------------------------dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia 202 (334)
T KOG0278|consen 157 -CILS-SA--------------------------------DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA 202 (334)
T ss_pred -eEEe-ec--------------------------------cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe
Confidence 2232 11 24799999999999999999999998888876 788899
Q ss_pred eCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCC
Q 001935 209 LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (994)
Q Consensus 209 l~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp 288 (994)
....|.+||+.+++.+.... .| .| + +. .+-+|
T Consensus 203 ~gssV~Fwdaksf~~lKs~k---~P---------~n-------V-----~S------------------------ASL~P 234 (334)
T KOG0278|consen 203 YGSSVKFWDAKSFGLLKSYK---MP---------CN-------V-----ES------------------------ASLHP 234 (334)
T ss_pred cCceeEEeccccccceeecc---Cc---------cc-------c-----cc------------------------ccccC
Confidence 99999999999988766543 22 00 0 00 00111
Q ss_pred CCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe-cc
Q 001935 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-KA 367 (994)
Q Consensus 289 ~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~-~a 367 (994)
..+.+ ..++.|+.+..||+.++..+..+ ++
T Consensus 235 ~k~~f-------------------------------------------------VaGged~~~~kfDy~TgeEi~~~nkg 265 (334)
T KOG0278|consen 235 KKEFF-------------------------------------------------VAGGEDFKVYKFDYNTGEEIGSYNKG 265 (334)
T ss_pred CCceE-------------------------------------------------EecCcceEEEEEeccCCceeeecccC
Confidence 11111 23578999999999999988776 99
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCC
Q 001935 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 368 HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (994)
|-+||-|+.|+|||.+-|++|+||+ ||+|+..+
T Consensus 266 h~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~ 298 (334)
T KOG0278|consen 266 HFGPVHCVRFSPDGELYASGSEDGT-IRLWQTTP 298 (334)
T ss_pred CCCceEEEEECCCCceeeccCCCce-EEEEEecC
Confidence 9999999999999999999999887 99999865
No 37
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.68 E-value=1.2e-14 Score=156.13 Aligned_cols=225 Identities=15% Similarity=0.145 Sum_probs=170.2
Q ss_pred CCCCeEEEEEec-CcEEEEEccCC--C---cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCC
Q 001935 72 SVFKQVLLLGYQ-NGFQVLDVEDA--S---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLA 145 (994)
Q Consensus 72 ~~~~~vL~lGy~-~G~qVWDv~~~--g---~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~ 145 (994)
.|.++.++.|.- |-.-||++... . .+...|.+|.|-+++.+|+++. .|+.-+ |
T Consensus 106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--------------~ilT~S-------G 164 (343)
T KOG0286|consen 106 SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--------------HILTGS-------G 164 (343)
T ss_pred CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--------------ceEecC-------C
Confidence 356777777765 55799999633 1 3445678899999999999754 334311 1
Q ss_pred CCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC---CeEEE-EeCCeEEEEECCC
Q 001935 146 PGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAV-GLATQIYCFDALT 220 (994)
Q Consensus 146 ~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~---~iLAV-gl~~~I~IwDa~T 220 (994)
+.+..+||+.+|+.+..+..| .-|.++++.| +.++. +.|...+|||++.
T Consensus 165 --------------------------D~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~ 218 (343)
T KOG0286|consen 165 --------------------------DMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS 218 (343)
T ss_pred --------------------------CceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC
Confidence 368999999999999998755 5899999887 55665 5677899999999
Q ss_pred CceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehh
Q 001935 221 LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME 300 (994)
Q Consensus 221 le~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~d 300 (994)
..+.+++.+|.. +|| .+.| .|++.
T Consensus 219 ~~c~qtF~ghes---------DIN----sv~f----------------------------------fP~G~--------- 242 (343)
T KOG0286|consen 219 GQCVQTFEGHES---------DIN----SVRF----------------------------------FPSGD--------- 242 (343)
T ss_pred cceeEeeccccc---------ccc----eEEE----------------------------------ccCCC---------
Confidence 999999888755 122 1111 11111
Q ss_pred hhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC--CCCeEEEEEC
Q 001935 301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH--TSPISALCFD 378 (994)
Q Consensus 301 ssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aH--tspIsaLaFS 378 (994)
.+++++.|++.++||+...+.++.+... ..+|++++||
T Consensus 243 ----------------------------------------afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS 282 (343)
T KOG0286|consen 243 ----------------------------------------AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS 282 (343)
T ss_pred ----------------------------------------eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence 1346789999999999999999888742 3589999999
Q ss_pred CCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEE
Q 001935 379 PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458 (994)
Q Consensus 379 PdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw 458 (994)
.+|+||..+-. +.+++|||.+. | .++-.|. ||. ..|.+|..+|||.-||+||-|.+++||
T Consensus 283 ~SGRlLfagy~-d~~c~vWDtlk-------~----------e~vg~L~-GHe-NRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 283 KSGRLLFAGYD-DFTCNVWDTLK-------G----------ERVGVLA-GHE-NRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred ccccEEEeeec-CCceeEeeccc-------c----------ceEEEee-ccC-CeeEEEEECCCCcEEEecchhHheeec
Confidence 99999998866 45599999864 2 3555553 654 579999999999999999999999999
Q ss_pred e
Q 001935 459 V 459 (994)
Q Consensus 459 ~ 459 (994)
.
T Consensus 343 ~ 343 (343)
T KOG0286|consen 343 A 343 (343)
T ss_pred C
Confidence 5
No 38
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.67 E-value=5.1e-15 Score=175.46 Aligned_cols=241 Identities=19% Similarity=0.186 Sum_probs=184.1
Q ss_pred CCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEe-cCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccc
Q 001935 50 NASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGY-QNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRK 128 (994)
Q Consensus 50 ~~~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy-~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~ 128 (994)
...++|++.|--..|.+ ...+|+.|. +..++|||+ ..|.+..++.+|...|+++.+.+
T Consensus 243 ~~l~GH~g~V~~l~~~~-------~~~~lvsgS~D~t~rvWd~-~sg~C~~~l~gh~stv~~~~~~~------------- 301 (537)
T KOG0274|consen 243 TRLVGHFGGVWGLAFPS-------GGDKLVSGSTDKTERVWDC-STGECTHSLQGHTSSVRCLTIDP------------- 301 (537)
T ss_pred eeccCCCCCceeEEEec-------CCCEEEEEecCCcEEeEec-CCCcEEEEecCCCceEEEEEccC-------------
Confidence 34788888888777764 124677776 556999997 57999999999999999998763
Q ss_pred cCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecCCeEEE
Q 001935 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPRIVAV 207 (994)
Q Consensus 129 srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~-f~S~V~sV~~S~~iLAV 207 (994)
.+.+ +| + .|++|++|++.++.+++++. +..+|++|.++..+|++
T Consensus 302 ---~~~~-sg---------------------s----------~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvs 346 (537)
T KOG0274|consen 302 ---FLLV-SG---------------------S----------RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVS 346 (537)
T ss_pred ---ceEe-ec---------------------c----------CCceEEEEeccCcceEEEeccccccEEEEEecCCEEEE
Confidence 2232 21 1 25899999999999999999 77899999999887776
Q ss_pred Ee-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCc
Q 001935 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (994)
Q Consensus 208 gl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~st 286 (994)
|. ++.|.+||+.++++++++..|..+. -.+ ++.++.
T Consensus 347 gs~d~~v~VW~~~~~~cl~sl~gH~~~V-------------~sl-------~~~~~~----------------------- 383 (537)
T KOG0274|consen 347 GSYDGTVKVWDPRTGKCLKSLSGHTGRV-------------YSL-------IVDSEN----------------------- 383 (537)
T ss_pred EecCceEEEEEhhhceeeeeecCCcceE-------------EEE-------EecCcc-----------------------
Confidence 55 5579999999999999998775420 011 111100
Q ss_pred CCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEEEEe
Q 001935 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQF 365 (994)
Q Consensus 287 Sp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~-~~i~~~ 365 (994)
...+++.|+.|++||+.++ +++.++
T Consensus 384 ------------------------------------------------------~~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 384 ------------------------------------------------------RLLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred ------------------------------------------------------eEEeeeeccceEeecCCchhhhhhhh
Confidence 0113467899999999999 999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 001935 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (994)
Q Consensus 366 ~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~ 445 (994)
..|++-+..|.+ .+++|++++.||+ |++||+.. + .+++++... +...|..+++. ...
T Consensus 410 ~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~-------~----------~~~~~~~~~-~~~~v~~l~~~--~~~ 466 (537)
T KOG0274|consen 410 QGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEE-------G----------ECLRTLEGR-HVGGVSALALG--KEE 466 (537)
T ss_pred cCCccccccccc--ccceeEecccccc-EEEeeccc-------C----------ceeeeeccC-CcccEEEeecC--cce
Confidence 999998866555 6789999999875 99999864 3 466666532 33568888887 568
Q ss_pred EEEEeCCCeEEEEecCCCCCC
Q 001935 446 IAIVSSKGTCHVFVLSPFGGD 466 (994)
Q Consensus 446 LAsgS~dGTVhIw~I~~~gg~ 466 (994)
+++++.+|++++|++......
T Consensus 467 il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 467 ILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred EEEEecCCeeEEEecccCchh
Confidence 899999999999999876543
No 39
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.67 E-value=1.6e-15 Score=177.29 Aligned_cols=226 Identities=19% Similarity=0.267 Sum_probs=177.5
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCC
Q 001935 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (994)
Q Consensus 74 ~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~ 152 (994)
..+++++|+++| +||||+. ...+.|+...|+|.+..++.+|+... ++..+
T Consensus 423 gd~~Iv~G~k~Gel~vfdla-S~~l~Eti~AHdgaIWsi~~~pD~~g-------------~vT~s--------------- 473 (888)
T KOG0306|consen 423 GDRYIVLGTKNGELQVFDLA-SASLVETIRAHDGAIWSISLSPDNKG-------------FVTGS--------------- 473 (888)
T ss_pred CCceEEEeccCCceEEEEee-hhhhhhhhhccccceeeeeecCCCCc-------------eEEec---------------
Confidence 567899999998 9999995 46677888899999999999987621 22211
Q ss_pred ccccccCCcCCCCCCCCCCCCEEEEEECCC-----CeE--------EEEEeCCCcEEEEEecC--CeEEEEe-CCeEEEE
Q 001935 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQS-----HCY--------EHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCF 216 (994)
Q Consensus 153 ~~~vr~g~~d~~~~~~~~sp~tVrLWDlkt-----ge~--------V~tL~f~S~V~sV~~S~--~iLAVgl-~~~I~Iw 216 (994)
.+++|+|||++- |.. -++|++...|++|+++| ++|||++ +.++++|
T Consensus 474 ------------------aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 474 ------------------ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred ------------------CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 258999999851 222 24677888999999997 7999977 6689999
Q ss_pred ECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEE
Q 001935 217 DALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVAR 296 (994)
Q Consensus 217 Da~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~ 296 (994)
-+.|++-..+|.+|..|. -.|.++ |++.
T Consensus 536 flDtlKFflsLYGHkLPV-------------~smDIS----------------------------------~DSk----- 563 (888)
T KOG0306|consen 536 FLDTLKFFLSLYGHKLPV-------------LSMDIS----------------------------------PDSK----- 563 (888)
T ss_pred Eecceeeeeeecccccce-------------eEEecc----------------------------------CCcC-----
Confidence 999999888888887751 112221 1111
Q ss_pred eehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEE
Q 001935 297 YAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALC 376 (994)
Q Consensus 297 ~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLa 376 (994)
.+++++.|..|+||-+.=|.+-..|-||...|.++.
T Consensus 564 --------------------------------------------livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 564 --------------------------------------------LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred --------------------------------------------eEEeccCCCceEEeccccchhhhhhhcccCceeEEE
Confidence 123567899999999999999999999999999999
Q ss_pred ECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEE
Q 001935 377 FDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCH 456 (994)
Q Consensus 377 FSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVh 456 (994)
|=|+-.++.|++.||. |+-||-.. ..++.+|. |++ ..||+++-+|+|.+++++|.|.+|+
T Consensus 600 F~P~~~~FFt~gKD~k-vKqWDg~k-----------------Fe~iq~L~-~H~-~ev~cLav~~~G~~vvs~shD~sIR 659 (888)
T KOG0306|consen 600 FLPKTHLFFTCGKDGK-VKQWDGEK-----------------FEEIQKLD-GHH-SEVWCLAVSPNGSFVVSSSHDKSIR 659 (888)
T ss_pred EcccceeEEEecCcce-EEeechhh-----------------hhhheeec-cch-heeeeeEEcCCCCeEEeccCCceeE
Confidence 9999999999999665 99999532 25677774 544 5799999999999999999999999
Q ss_pred EEecCC
Q 001935 457 VFVLSP 462 (994)
Q Consensus 457 Iw~I~~ 462 (994)
+|.-..
T Consensus 660 lwE~td 665 (888)
T KOG0306|consen 660 LWERTD 665 (888)
T ss_pred eeeccC
Confidence 998654
No 40
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=6.7e-15 Score=166.27 Aligned_cols=235 Identities=20% Similarity=0.265 Sum_probs=167.8
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
.--++.|..+.|-+ ++++|++|...| +||||. ..-.....+..|+.||..++|.|.. .
T Consensus 65 srFk~~v~s~~fR~-------DG~LlaaGD~sG~V~vfD~-k~r~iLR~~~ah~apv~~~~f~~~d-------------~ 123 (487)
T KOG0310|consen 65 SRFKDVVYSVDFRS-------DGRLLAAGDESGHVKVFDM-KSRVILRQLYAHQAPVHVTKFSPQD-------------N 123 (487)
T ss_pred HhhccceeEEEeec-------CCeEEEccCCcCcEEEecc-ccHHHHHHHhhccCceeEEEecccC-------------C
Confidence 44678889999975 678999999988 899996 4444566778899999999998754 2
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCC---eEEE
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR---IVAV 207 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~~---iLAV 207 (994)
.+++ ++++ +.++++||+.+...+..|.-+ ..|++.++++. +++.
T Consensus 124 t~l~-s~sD-------------------------------d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvt 171 (487)
T KOG0310|consen 124 TMLV-SGSD-------------------------------DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVT 171 (487)
T ss_pred eEEE-ecCC-------------------------------CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEe
Confidence 3443 3321 378999999999875566544 58999999883 6666
Q ss_pred -EeCCeEEEEECCCC-ceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCC
Q 001935 208 -GLATQIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (994)
Q Consensus 208 -gl~~~I~IwDa~Tl-e~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~s 285 (994)
+.|+.|++||+++. ....++. |..|. -..+++. +
T Consensus 172 GsYDg~vrl~DtR~~~~~v~eln-hg~pV------------e~vl~lp-------s------------------------ 207 (487)
T KOG0310|consen 172 GSYDGKVRLWDTRSLTSRVVELN-HGCPV------------ESVLALP-------S------------------------ 207 (487)
T ss_pred cCCCceEEEEEeccCCceeEEec-CCCce------------eeEEEcC-------C------------------------
Confidence 45778999999876 4444443 22210 0112221 1
Q ss_pred cCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc-EEEE
Q 001935 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA-IISQ 364 (994)
Q Consensus 286 tSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~-~i~~ 364 (994)
|++++ ++ .-..|+|||+.+|. .+..
T Consensus 208 -----gs~ia------------------------------------------------sA-gGn~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 208 -----GSLIA------------------------------------------------SA-GGNSVKVWDLTTGGQLLTS 233 (487)
T ss_pred -----CCEEE------------------------------------------------Ec-CCCeEEEEEecCCceehhh
Confidence 11111 11 12369999999654 4455
Q ss_pred eccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 001935 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ 444 (994)
Q Consensus 365 ~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~ 444 (994)
+..|...|+||+|..+|+.|.|||-||+ ++||++... +.++.+. -+++|.+|+.|||++
T Consensus 234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~~-VKVfd~t~~-----------------Kvv~s~~---~~~pvLsiavs~dd~ 292 (487)
T KOG0310|consen 234 MFNHNKTVTCLRLASDSTRLLSGSLDRH-VKVFDTTNY-----------------KVVHSWK---YPGPVLSIAVSPDDQ 292 (487)
T ss_pred hhcccceEEEEEeecCCceEeecccccc-eEEEEccce-----------------EEEEeee---cccceeeEEecCCCc
Confidence 5559999999999999999999999887 899997421 3444432 246899999999999
Q ss_pred EEEEEeCCCeEEEEe
Q 001935 445 WIAIVSSKGTCHVFV 459 (994)
Q Consensus 445 ~LAsgS~dGTVhIw~ 459 (994)
.+++|-.+|.+-+=.
T Consensus 293 t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 293 TVVIGMSNGLVSIRR 307 (487)
T ss_pred eEEEecccceeeeeh
Confidence 999999999987653
No 41
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.66 E-value=1.4e-13 Score=146.20 Aligned_cols=263 Identities=13% Similarity=0.090 Sum_probs=157.8
Q ss_pred EEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccc
Q 001935 77 VLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG 155 (994)
Q Consensus 77 vL~lGy~~-G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~ 155 (994)
+++++..+ .+.+||+. ++++...+..+.+ +..+.+.|++ ..|+++..
T Consensus 3 ~~~s~~~d~~v~~~d~~-t~~~~~~~~~~~~-~~~l~~~~dg-------------~~l~~~~~----------------- 50 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTA-TLEVTRTFPVGQR-PRGITLSKDG-------------KLLYVCAS----------------- 50 (300)
T ss_pred EEEEecCCCEEEEEECC-CCceEEEEECCCC-CCceEECCCC-------------CEEEEEEC-----------------
Confidence 55555554 59999985 4666666665544 5667877654 24443321
Q ss_pred cccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEE--eCCeEEEEECCCCceeEEEeecC
Q 001935 156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG--LATQIYCFDALTLENKFSVLTYP 231 (994)
Q Consensus 156 vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVg--l~~~I~IwDa~Tle~l~tL~t~p 231 (994)
.+++|++||+++++.+..+.....+..+.+++ +.|+++ .++.|++||+.+.+.+..+....
T Consensus 51 ---------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 115 (300)
T TIGR03866 51 ---------------DSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV 115 (300)
T ss_pred ---------------CCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC
Confidence 13689999999999988876655566777876 455543 35689999999877665554211
Q ss_pred CccccCCCccccccCccceEEcc--cEEEEccCC---eeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhh
Q 001935 232 VPQLAGQGAVGINVGYGPMAVGP--RWLAYASNT---LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (994)
Q Consensus 232 ~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~~---~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la 306 (994)
. ...+++.+ ++|++.... ...|+.. .+.++...
T Consensus 116 ~--------------~~~~~~~~dg~~l~~~~~~~~~~~~~d~~-------------------~~~~~~~~--------- 153 (300)
T TIGR03866 116 E--------------PEGMAVSPDGKIVVNTSETTNMAHFIDTK-------------------TYEIVDNV--------- 153 (300)
T ss_pred C--------------cceEEECCCCCEEEEEecCCCeEEEEeCC-------------------CCeEEEEE---------
Confidence 1 12355555 556554431 1222210 00000000
Q ss_pred cccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCC-----C--CeEEEEECC
Q 001935 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-----S--PISALCFDP 379 (994)
Q Consensus 307 ~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHt-----s--pIsaLaFSP 379 (994)
..........++++++.. .+.+..+|.|.+||+.+++.+..+..+. . ....++|+|
T Consensus 154 --------------~~~~~~~~~~~s~dg~~l---~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 216 (300)
T TIGR03866 154 --------------LVDQRPRFAEFTADGKEL---WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK 216 (300)
T ss_pred --------------EcCCCccEEEECCCCCEE---EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC
Confidence 000000011122222211 1244568999999999998877665332 1 123689999
Q ss_pred CCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE-eCCCeEEEE
Q 001935 380 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVF 458 (994)
Q Consensus 380 dGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsg-S~dGTVhIw 458 (994)
+|++++.+......|.|||+.. + +.+..+..+ ..+.+++|+||+++|+++ ..+|+|+||
T Consensus 217 dg~~~~~~~~~~~~i~v~d~~~-------~----------~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 217 DGKTAFVALGPANRVAVVDAKT-------Y----------EVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCC-------C----------cEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEE
Confidence 9998666544344599999853 2 233333222 358899999999999886 468999999
Q ss_pred ecCCCCC
Q 001935 459 VLSPFGG 465 (994)
Q Consensus 459 ~I~~~gg 465 (994)
++.....
T Consensus 277 d~~~~~~ 283 (300)
T TIGR03866 277 DVAALKV 283 (300)
T ss_pred ECCCCcE
Confidence 9987543
No 42
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.66 E-value=4.1e-16 Score=175.73 Aligned_cols=261 Identities=15% Similarity=0.115 Sum_probs=186.0
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 51 ~~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
...+|++.|..+.|-.+ ...+|+.|.-++ ++||++=+.+.+..++.+|..+|+.+.+.+.+.
T Consensus 209 ~~~gH~kgvsai~~fp~------~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~----------- 271 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPK------KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT----------- 271 (503)
T ss_pred eccCCccccchhhhccc------eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC-----------
Confidence 36788888988887642 245666666665 999999777899999999999999999887652
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEE
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVA 206 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~---~iLA 206 (994)
-++.+ +.++.|++||+.||+++..+.....+++|.++| ++++
T Consensus 272 --~fLS~---------------------------------sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl 316 (503)
T KOG0282|consen 272 --SFLSA---------------------------------SFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFL 316 (503)
T ss_pred --eeeee---------------------------------ecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEE
Confidence 12321 146899999999999999988888999999987 3444
Q ss_pred E-EeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCC
Q 001935 207 V-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (994)
Q Consensus 207 V-gl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~s 285 (994)
| +++++|+.||+++.+.++....|-.+ ++ .+. |-.
T Consensus 317 ~G~sd~ki~~wDiRs~kvvqeYd~hLg~---------i~----~i~-------F~~------------------------ 352 (503)
T KOG0282|consen 317 VGGSDKKIRQWDIRSGKVVQEYDRHLGA---------IL----DIT-------FVD------------------------ 352 (503)
T ss_pred EecCCCcEEEEeccchHHHHHHHhhhhh---------ee----eeE-------Ecc------------------------
Confidence 4 56778999999998866544332110 00 000 000
Q ss_pred cCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 001935 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (994)
Q Consensus 286 tSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~ 365 (994)
.+. .+++++.|+.|+||+...+-.+..+
T Consensus 353 ---~g~-------------------------------------------------rFissSDdks~riWe~~~~v~ik~i 380 (503)
T KOG0282|consen 353 ---EGR-------------------------------------------------RFISSSDDKSVRIWENRIPVPIKNI 380 (503)
T ss_pred ---CCc-------------------------------------------------eEeeeccCccEEEEEcCCCccchhh
Confidence 000 1224467889999999987655444
Q ss_pred c-cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCC
Q 001935 366 K-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYS 443 (994)
Q Consensus 366 ~-aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a-~I~sIaFSpDg 443 (994)
. .+.....+|+..|+|..++.=|. |..|-||.+.+.+.. ..++-.+|+..+ --..+.|||||
T Consensus 381 ~~~~~hsmP~~~~~P~~~~~~aQs~-dN~i~ifs~~~~~r~---------------nkkK~feGh~vaGys~~v~fSpDG 444 (503)
T KOG0282|consen 381 ADPEMHTMPCLTLHPNGKWFAAQSM-DNYIAIFSTVPPFRL---------------NKKKRFEGHSVAGYSCQVDFSPDG 444 (503)
T ss_pred cchhhccCcceecCCCCCeehhhcc-CceEEEEeccccccc---------------CHhhhhcceeccCceeeEEEcCCC
Confidence 3 23334558999999999998888 666999998653211 122222454333 23569999999
Q ss_pred CEEEEEeCCCeEEEEecCCCCCCcccccccCC
Q 001935 444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQ 475 (994)
Q Consensus 444 ~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~s~ 475 (994)
++|++|..+|.+.+|+-.+-+....+.+|+..
T Consensus 445 ~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ 476 (503)
T KOG0282|consen 445 RTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQP 476 (503)
T ss_pred CeEEeecCCccEEEeechhhhhhhccccCCcc
Confidence 99999999999999999988877788888643
No 43
>PTZ00421 coronin; Provisional
Probab=99.66 E-value=6.6e-14 Score=164.98 Aligned_cols=221 Identities=15% Similarity=0.130 Sum_probs=150.4
Q ss_pred CcEEEEEccCCCcceE---eeeeccCCEEEEEEec-CCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccC
Q 001935 84 NGFQVLDVEDASNFNE---LVSKRDGPVSFLQMQP-FPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDG 159 (994)
Q Consensus 84 ~G~qVWDv~~~g~v~e---lls~hdGpV~~v~~lP-~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g 159 (994)
+|+.|+.++..|.+.. ++.+|.++|..++|.| ++ .+||..+
T Consensus 51 gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~-------------~~LaSgS---------------------- 95 (493)
T PTZ00421 51 GSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDP-------------QKLFTAS---------------------- 95 (493)
T ss_pred CceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCC-------------CEEEEEe----------------------
Confidence 3444444444454443 5778999999999997 33 2556422
Q ss_pred CcCCCCCCCCCCCCEEEEEECCCC-------eEEEEEeCC-CcEEEEEecC---CeEEEEe-CCeEEEEECCCCceeEEE
Q 001935 160 MMDSQSGNCVNSPTAVRFYSFQSH-------CYEHVLRFR-SSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSV 227 (994)
Q Consensus 160 ~~d~~~~~~~~sp~tVrLWDlktg-------e~V~tL~f~-S~V~sV~~S~---~iLAVgl-~~~I~IwDa~Tle~l~tL 227 (994)
.+++|++||+.++ +.+.+|..+ ..|..|+|++ ++|+++. ++.|+|||+.+.+.+.++
T Consensus 96 -----------~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l 164 (493)
T PTZ00421 96 -----------EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI 164 (493)
T ss_pred -----------CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE
Confidence 1478999999765 345666544 6899999987 3677644 668999999998877766
Q ss_pred eecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhc
Q 001935 228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (994)
Q Consensus 228 ~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~ 307 (994)
..|..+ ... |++.. ++.
T Consensus 165 ~~h~~~-------------V~s-------la~sp---------------------------dG~---------------- 181 (493)
T PTZ00421 165 KCHSDQ-------------ITS-------LEWNL---------------------------DGS---------------- 181 (493)
T ss_pred cCCCCc-------------eEE-------EEEEC---------------------------CCC----------------
Confidence 555431 011 22211 111
Q ss_pred ccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCe-EEEEECCCCCEEEE
Q 001935 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPI-SALCFDPSGTLLVT 386 (994)
Q Consensus 308 Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspI-saLaFSPdGtlLAT 386 (994)
.+++++.||.|+|||+.+++.+..+.+|...+ ..+.|.+++.+|+|
T Consensus 182 ---------------------------------lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 182 ---------------------------------LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred ---------------------------------EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 12245689999999999999999999998764 56889999888887
Q ss_pred EEc---CCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEecCC
Q 001935 387 ASV---YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSP 462 (994)
Q Consensus 387 AS~---dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS-~dGTVhIw~I~~ 462 (994)
++. .++.|+|||+... . ..+... .......+....|++|+++|++++ .||+|++|++..
T Consensus 229 ~G~s~s~Dr~VklWDlr~~------~----------~p~~~~-~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKM------A----------SPYSTV-DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred EecCCCCCCeEEEEeCCCC------C----------CceeEe-ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 653 2456999998531 1 122222 112234567788999999999988 599999999975
Q ss_pred C
Q 001935 463 F 463 (994)
Q Consensus 463 ~ 463 (994)
.
T Consensus 292 ~ 292 (493)
T PTZ00421 292 E 292 (493)
T ss_pred C
Confidence 3
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=6.7e-15 Score=169.42 Aligned_cols=223 Identities=16% Similarity=0.264 Sum_probs=171.6
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCC
Q 001935 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (994)
Q Consensus 74 ~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~ 152 (994)
.++.+++|.++. ++||+.+ +++-...+..|..-++++++-|.- |+++.. .|
T Consensus 66 RknWiv~GsDD~~IrVfnyn-t~ekV~~FeAH~DyIR~iavHPt~-------------P~vLts-SD------------- 117 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYN-TGEKVKTFEAHSDYIRSIAVHPTL-------------PYVLTS-SD------------- 117 (794)
T ss_pred ccceEEEecCCceEEEEecc-cceeeEEeeccccceeeeeecCCC-------------CeEEec-CC-------------
Confidence 357899999987 8999995 455567788899999999998763 776641 11
Q ss_pred ccccccCCcCCCCCCCCCCCCEEEEEECCCC-eEEEEEeCCC-cEEEEEecCC----eEEEEeCCeEEEEECCCCceeEE
Q 001935 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-CYEHVLRFRS-SVCMVRCSPR----IVAVGLATQIYCFDALTLENKFS 226 (994)
Q Consensus 153 ~~~vr~g~~d~~~~~~~~sp~tVrLWDlktg-e~V~tL~f~S-~V~sV~~S~~----iLAVgl~~~I~IwDa~Tle~l~t 226 (994)
+-+|++||.+.+ .|..+++.|+ -|..|+|||+ +...++|.+|++|.+....+.+|
T Consensus 118 -------------------Dm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT 178 (794)
T KOG0276|consen 118 -------------------DMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT 178 (794)
T ss_pred -------------------ccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee
Confidence 358999999865 5777887665 7999999993 45568899999999999999999
Q ss_pred EeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhh
Q 001935 227 VLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (994)
Q Consensus 227 L~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la 306 (994)
+..|.. ++| ++-|-+. | +
T Consensus 179 l~gHek---------GVN-----------~Vdyy~~-------g------------------d----------------- 196 (794)
T KOG0276|consen 179 LEGHEK---------GVN-----------CVDYYTG-------G------------------D----------------- 196 (794)
T ss_pred eecccc---------Ccc-----------eEEeccC-------C------------------C-----------------
Confidence 988765 222 2222110 0 0
Q ss_pred cccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 001935 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT 386 (994)
Q Consensus 307 ~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLAT 386 (994)
| .-+.++..|.+|+|||.+++.++.+|.+|++.|++++|.|.=.+++|
T Consensus 197 -----------------------------k---pylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 197 -----------------------------K---PYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred -----------------------------c---ceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE
Confidence 0 01235678999999999999999999999999999999999999999
Q ss_pred EEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 001935 387 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (994)
Q Consensus 387 AS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhI 457 (994)
+|+||+ +|||+..+. ++...|--|. ..||||+-.++++.+|+|.+.|.|.|
T Consensus 245 gsEDGT-vriWhs~Ty-----------------~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 245 GSEDGT-VRIWNSKTY-----------------KLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ecCCcc-EEEecCcce-----------------ehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999888 899997432 2222333333 35899999999999999999998754
No 45
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.65 E-value=2.6e-15 Score=166.83 Aligned_cols=235 Identities=16% Similarity=0.224 Sum_probs=172.4
Q ss_pred CcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEE
Q 001935 57 DQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVV 136 (994)
Q Consensus 57 d~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvV 136 (994)
..|+-..||. +.+.+|+.++++..++|+++ ...++.+|++|.+.|.++.+.-. . ..+|
T Consensus 220 g~it~~d~d~------~~~~~iAas~d~~~r~Wnvd-~~r~~~TLsGHtdkVt~ak~~~~------------~---~~vV 277 (459)
T KOG0288|consen 220 GNITSIDFDS------DNKHVIAASNDKNLRLWNVD-SLRLRHTLSGHTDKVTAAKFKLS------------H---SRVV 277 (459)
T ss_pred CCcceeeecC------CCceEEeecCCCceeeeecc-chhhhhhhcccccceeeehhhcc------------c---ccee
Confidence 3455556652 35788999988999999995 57788999999999999987621 1 2244
Q ss_pred ecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEe-CCeEEE
Q 001935 137 AGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYC 215 (994)
Q Consensus 137 sgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~~iLAVgl-~~~I~I 215 (994)
++. .++++++||+.++.|.+++-+-+.+.+|.++...++.+- +++|++
T Consensus 278 sgs-------------------------------~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRf 326 (459)
T KOG0288|consen 278 SGS-------------------------------ADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRF 326 (459)
T ss_pred ecc-------------------------------ccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEE
Confidence 431 368999999999999999988899999999976666544 668999
Q ss_pred EECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEE
Q 001935 216 FDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVA 295 (994)
Q Consensus 216 wDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa 295 (994)
||+++..+.+++..... ...+.++ +++-
T Consensus 327 wD~Rs~~~~~sv~~gg~--------------vtSl~ls----------------------------------~~g~---- 354 (459)
T KOG0288|consen 327 WDIRSADKTRSVPLGGR--------------VTSLDLS----------------------------------MDGL---- 354 (459)
T ss_pred EeccCCceeeEeecCcc--------------eeeEeec----------------------------------cCCe----
Confidence 99998776665532110 0011111 0000
Q ss_pred EeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC----CCC
Q 001935 296 RYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH----TSP 371 (994)
Q Consensus 296 ~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aH----tsp 371 (994)
.+.+...|.++.+.|+.+.++...|.|- .+.
T Consensus 355 ---------------------------------------------~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 355 ---------------------------------------------ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred ---------------------------------------------EEeeecCCCceeeeecccccEEEEeeccccccccc
Confidence 0112246778889999988888888763 345
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 001935 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS 451 (994)
Q Consensus 372 IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~ 451 (994)
.+.+.|||+|.|+|+||.+|. |.||++.. | .+...|.--..++.|.+++|+|-|..|++++.
T Consensus 390 wtrvvfSpd~~YvaAGS~dgs-v~iW~v~t-------g----------KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGS-VYIWSVFT-------G----------KLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred cceeEECCCCceeeeccCCCc-EEEEEccC-------c----------eEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 889999999999999999887 89999963 3 45555544334447999999999999999999
Q ss_pred CCeEEEEe
Q 001935 452 KGTCHVFV 459 (994)
Q Consensus 452 dGTVhIw~ 459 (994)
++.+.+|.
T Consensus 452 ~~~v~lW~ 459 (459)
T KOG0288|consen 452 QKAVTLWT 459 (459)
T ss_pred CcceEecC
Confidence 99999994
No 46
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.65 E-value=3.9e-14 Score=150.84 Aligned_cols=258 Identities=14% Similarity=0.110 Sum_probs=171.9
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~-G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
.+|--.++.++|++ .+-+|.++..+ ..-||-. .+|+..-++.+|.|.|.++.+.-+ ++
T Consensus 7 ~GHERplTqiKyN~-------eGDLlFscaKD~~~~vw~s-~nGerlGty~GHtGavW~~Did~~-----------s~-- 65 (327)
T KOG0643|consen 7 QGHERPLTQIKYNR-------EGDLLFSCAKDSTPTVWYS-LNGERLGTYDGHTGAVWCCDIDWD-----------SK-- 65 (327)
T ss_pred ccCccccceEEecC-------CCcEEEEecCCCCceEEEe-cCCceeeeecCCCceEEEEEecCC-----------cc--
Confidence 45666688888886 34466666555 5899986 468888889999999999988732 22
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL 209 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVgl 209 (994)
.|+ +|. .+.+++|||.++|+++.+++++++|+.+.|+. .+++++.
T Consensus 66 ~li--TGS-------------------------------AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~t 112 (327)
T KOG0643|consen 66 HLI--TGS-------------------------------ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILAST 112 (327)
T ss_pred eee--ecc-------------------------------ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEe
Confidence 223 221 25789999999999999999999999999987 5666666
Q ss_pred CC------eEEEEECCCCc-------eeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCc
Q 001935 210 AT------QIYCFDALTLE-------NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQN 276 (994)
Q Consensus 210 ~~------~I~IwDa~Tle-------~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qs 276 (994)
++ .|.+||++... +.+.|.++... -+..+|.
T Consensus 113 D~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk----------------------------it~a~Wg-------- 156 (327)
T KOG0643|consen 113 DKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK----------------------------ITSALWG-------- 156 (327)
T ss_pred hhhcCcceEEEEEEccCChhhhcccCceEEecCCccc----------------------------eeeeeec--------
Confidence 65 38888887432 11111111100 0011121
Q ss_pred CCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEEC
Q 001935 277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 356 (994)
Q Consensus 277 ltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl 356 (994)
+..-.+..+..+|.|.+||+
T Consensus 157 ------------------------------------------------------------~l~~~ii~Ghe~G~is~~da 176 (327)
T KOG0643|consen 157 ------------------------------------------------------------PLGETIIAGHEDGSISIYDA 176 (327)
T ss_pred ------------------------------------------------------------ccCCEEEEecCCCcEEEEEc
Confidence 11112345778999999999
Q ss_pred CCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCc---------ccC-------------CCCCCcc
Q 001935 357 VTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC---------MRS-------------GSGNHKY 413 (994)
Q Consensus 357 ~s~~-~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~---------~~~-------------~sG~~~~ 413 (994)
.++. .+...+-|.+.|+.|+|+||.++++|+|. +++-++||..... ..| +.|+..+
T Consensus 177 ~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~-Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 177 RTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK-DTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAM 255 (327)
T ss_pred ccCceeeechhhhccccccccccCCcceEEeccc-CccceeeeccceeeEEEeeecccccceecccccceEEecCCceee
Confidence 9974 55666889999999999999999999999 5668999975320 000 0011111
Q ss_pred ccCCcceEEEE-------------Ee--cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 414 DWNSSHVHLYK-------------LH--RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 414 ~~~~s~~~l~~-------------L~--RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
+...+....-+ +. .| |-.+|.+|||+|||+-.++|+.||+|+|...+.
T Consensus 256 dVTTT~~r~GKFEArFyh~i~eEEigrvkG-HFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 256 DVTTTSTRAGKFEARFYHLIFEEEIGRVKG-HFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eeeeecccccchhhhHHHHHHHHHhccccc-cccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 11111000000 11 13 345899999999999999999999999876543
No 47
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.65 E-value=1.2e-14 Score=154.28 Aligned_cols=242 Identities=17% Similarity=0.188 Sum_probs=169.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEe-eeeccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNEL-VSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~el-ls~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
..++..+|.-+.|+- ++.-|+.|.-++ +.||+++....+.++ ..+|.+-|.-+.+.|.-
T Consensus 16 ~~~~~~~v~Sv~wn~-------~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~------------ 76 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNC-------DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH------------ 76 (313)
T ss_pred hhhhhhcceEEEEcc-------cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC------------
Confidence 456778888888873 456777776655 899999754322222 34566678877776532
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEE
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAV 207 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAV 207 (994)
-++++++++ +.+|++||++++++++.+.-...=..+.++| ..+++
T Consensus 77 ~d~~atas~---------------------------------dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~ 123 (313)
T KOG1407|consen 77 PDLFATASG---------------------------------DKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAV 123 (313)
T ss_pred CcceEEecC---------------------------------CceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEE
Confidence 257776543 3689999999999999998776556677877 45555
Q ss_pred -EeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCc
Q 001935 208 -GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (994)
Q Consensus 208 -gl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~st 286 (994)
.-++.|.++|+++.+....-. .+ --+ +-+ .|..
T Consensus 124 ~~kdD~it~id~r~~~~~~~~~---~~-------~e~----ne~---------------~w~~----------------- 157 (313)
T KOG1407|consen 124 GNKDDRITFIDARTYKIVNEEQ---FK-------FEV----NEI---------------SWNN----------------- 157 (313)
T ss_pred ecCcccEEEEEecccceeehhc---cc-------cee----eee---------------eecC-----------------
Confidence 446789999998866443211 10 000 001 1110
Q ss_pred CCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 001935 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (994)
Q Consensus 287 Sp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~ 366 (994)
++..+ .-...-|.|.|......+.+..|+
T Consensus 158 --~nd~F-------------------------------------------------flt~GlG~v~ILsypsLkpv~si~ 186 (313)
T KOG1407|consen 158 --SNDLF-------------------------------------------------FLTNGLGCVEILSYPSLKPVQSIK 186 (313)
T ss_pred --CCCEE-------------------------------------------------EEecCCceEEEEeccccccccccc
Confidence 00000 011345889999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 001935 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (994)
Q Consensus 367 aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (994)
||.+...|+.|+|+|++||++|. +..+-+||+..- .++..+.| ...+|.-|+||.||++|
T Consensus 187 AH~snCicI~f~p~GryfA~GsA-DAlvSLWD~~EL-----------------iC~R~isR--ldwpVRTlSFS~dg~~l 246 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRYFATGSA-DALVSLWDVDEL-----------------ICERCISR--LDWPVRTLSFSHDGRML 246 (313)
T ss_pred cCCcceEEEEECCCCceEeeccc-cceeeccChhHh-----------------hhheeecc--ccCceEEEEeccCccee
Confidence 99999999999999999999999 566999998531 35555555 23589999999999999
Q ss_pred EEEeCCCeEEEEecCC
Q 001935 447 AIVSSKGTCHVFVLSP 462 (994)
Q Consensus 447 AsgS~dGTVhIw~I~~ 462 (994)
|++|.|-.|-|=.+++
T Consensus 247 ASaSEDh~IDIA~vet 262 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVET 262 (313)
T ss_pred eccCccceEEeEeccc
Confidence 9999998887655544
No 48
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.64 E-value=8.5e-15 Score=173.56 Aligned_cols=228 Identities=14% Similarity=0.132 Sum_probs=169.4
Q ss_pred EEEEEec-CcEEEEEccCCCcceEe-eeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCcc
Q 001935 77 VLLLGYQ-NGFQVLDVEDASNFNEL-VSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (994)
Q Consensus 77 vL~lGy~-~G~qVWDv~~~g~v~el-ls~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~ 154 (994)
.+..|.. ..+++||.. .+.+... +.+|.|.|..++|.- -.++|...+
T Consensus 220 ~~~~~s~~~tl~~~~~~-~~~~i~~~l~GH~g~V~~l~~~~-------------~~~~lvsgS----------------- 268 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLN-NGYLILTRLVGHFGGVWGLAFPS-------------GGDKLVSGS----------------- 268 (537)
T ss_pred eEEecCCCceeEEeecc-cceEEEeeccCCCCCceeEEEec-------------CCCEEEEEe-----------------
Confidence 4445544 557899995 5666666 889999999999762 123544321
Q ss_pred ccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEE-EeCCeEEEEECCCCceeEEEeecCC
Q 001935 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAV-GLATQIYCFDALTLENKFSVLTYPV 232 (994)
Q Consensus 155 ~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~~iLAV-gl~~~I~IwDa~Tle~l~tL~t~p~ 232 (994)
.+.++++||..+|+|+++|..+ +.|+.+...+..++. +.|.+|++||+.++.++.++..|..
T Consensus 269 ----------------~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~ 332 (537)
T KOG0274|consen 269 ----------------TDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG 332 (537)
T ss_pred ----------------cCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccc
Confidence 2579999999999999999854 688888888876666 4677999999999998888776433
Q ss_pred ccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhccccee
Q 001935 233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 312 (994)
Q Consensus 233 p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~kt 312 (994)
+ | +-+.+.. .
T Consensus 333 ~---------V-----------~~v~~~~-----------------------------~--------------------- 342 (537)
T KOG0274|consen 333 P---------V-----------NCVQLDE-----------------------------P--------------------- 342 (537)
T ss_pred c---------E-----------EEEEecC-----------------------------C---------------------
Confidence 2 0 1111110 0
Q ss_pred eccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 001935 313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN 392 (994)
Q Consensus 313 lS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt 392 (994)
.+.++.+||+|.|||+.++++++.+.+|+..|.+|.|++. .++.++|.|+
T Consensus 343 ----------------------------~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~- 392 (537)
T KOG0274|consen 343 ----------------------------LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT- 392 (537)
T ss_pred ----------------------------EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeecc-
Confidence 1124578999999999999999999999999999999887 8999999974
Q ss_pred eEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccccc
Q 001935 393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471 (994)
Q Consensus 393 ~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~ 471 (994)
.|++||+.. . .++++.|. | +.+.+.++.+ .+++|.+++.|++|++|+++.++....+.+
T Consensus 393 ~IkvWdl~~-------~---------~~c~~tl~-~-h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 393 TIKVWDLRT-------K---------RKCIHTLQ-G-HTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred ceEeecCCc-------h---------hhhhhhhc-C-Cccccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence 599999853 1 03666663 4 3455666555 568999999999999999998877655444
No 49
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.64 E-value=2.3e-15 Score=165.11 Aligned_cols=275 Identities=15% Similarity=0.183 Sum_probs=180.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEe-cCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCC----c
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGY-QNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEG----F 126 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy-~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~----F 126 (994)
..+|+|.|....-+ +... ..+++|. ++.++|||+. .-++..++..|+|.|+.+.+.-+..+.-+.|. +
T Consensus 62 L~gHrdGV~~lakh-----p~~l-s~~aSGs~DG~VkiWnls-qR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKH-----PNKL-STVASGSCDGEVKIWNLS-QRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcC-----cchh-hhhhccccCceEEEEehh-hhhhhheeecccCceeeEEecccceEEecCCcceeee
Confidence 57889988765543 2211 3455554 4559999995 56788899999999999988753333322222 2
Q ss_pred cccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC---
Q 001935 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--- 202 (994)
Q Consensus 127 ~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--- 202 (994)
.-..|.+-+..++.. - .++...+..... +.....|-|||..-...+..+... ..|.+|++|+
T Consensus 135 k~~~~p~~tilg~s~---~-----~gIdh~~~~~~F------aTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET 200 (433)
T KOG0268|consen 135 KIDGPPLHTILGKSV---Y-----LGIDHHRKNSVF------ATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVET 200 (433)
T ss_pred eccCCcceeeecccc---c-----cccccccccccc------cccCceeeecccccCCccceeecCCCceeEEecCCCcc
Confidence 211121111111100 0 001111211111 112356999999988899998875 4799999999
Q ss_pred CeEEEE-eCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCC
Q 001935 203 RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG 281 (994)
Q Consensus 203 ~iLAVg-l~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~ 281 (994)
.+|+++ .+..|.|||+++...++.+..--. .+.+++.|
T Consensus 201 sILas~~sDrsIvLyD~R~~~Pl~KVi~~mR--------------TN~IswnP--------------------------- 239 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQASPLKKVILTMR--------------TNTICWNP--------------------------- 239 (433)
T ss_pred hheeeeccCCceEEEecccCCccceeeeecc--------------ccceecCc---------------------------
Confidence 588876 567899999998777665542111 11122211
Q ss_pred CCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc-
Q 001935 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA- 360 (994)
Q Consensus 282 ~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~- 360 (994)
.++.+..++.|..+..||+....
T Consensus 240 --------------------------------------------------------eafnF~~a~ED~nlY~~DmR~l~~ 263 (433)
T KOG0268|consen 240 --------------------------------------------------------EAFNFVAANEDHNLYTYDMRNLSR 263 (433)
T ss_pred --------------------------------------------------------cccceeeccccccceehhhhhhcc
Confidence 11122345678888889988754
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 001935 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (994)
Q Consensus 361 ~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFS 440 (994)
.+...++|.+.|..+.|||.|+-+||||- +++||||.+.. | .-+-+|--+|- ..|.++.||
T Consensus 264 p~~v~~dhvsAV~dVdfsptG~Efvsgsy-DksIRIf~~~~-------~--------~SRdiYhtkRM---q~V~~Vk~S 324 (433)
T KOG0268|consen 264 PLNVHKDHVSAVMDVDFSPTGQEFVSGSY-DKSIRIFPVNH-------G--------HSRDIYHTKRM---QHVFCVKYS 324 (433)
T ss_pred cchhhcccceeEEEeccCCCcchhccccc-cceEEEeecCC-------C--------cchhhhhHhhh---heeeEEEEe
Confidence 67788999999999999999999999999 56799999854 1 11344544442 358999999
Q ss_pred cCCCEEEEEeCCCeEEEEecCCC
Q 001935 441 HYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 441 pDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
.|++||.+||+|+.|++|+-...
T Consensus 325 ~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 325 MDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred ccccEEEecCCCcceeeeecchh
Confidence 99999999999999999986543
No 50
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.63 E-value=7.6e-15 Score=160.73 Aligned_cols=216 Identities=16% Similarity=0.211 Sum_probs=158.3
Q ss_pred CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCE
Q 001935 95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA 174 (994)
Q Consensus 95 g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~t 174 (994)
-++..++++|-|+|++|++-|.. ..++ ++ + .+++
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n-------------~wf~--tg---------------------s----------~Drt 174 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGN-------------EWFA--TG---------------------S----------ADRT 174 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCc-------------eeEE--ec---------------------C----------CCce
Confidence 44567889999999999998743 1333 21 1 2589
Q ss_pred EEEEECCCCeEEEEEe-CCCcEEEEEecCC---eEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccce
Q 001935 175 VRFYSFQSHCYEHVLR-FRSSVCMVRCSPR---IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM 250 (994)
Q Consensus 175 VrLWDlktge~V~tL~-f~S~V~sV~~S~~---iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gpl 250 (994)
++|||+.+|+...+|. +-+.|..|+++++ ++.++.+++|+|||+...+.++...+|-+ +..
T Consensus 175 ikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS---------------~V~ 239 (460)
T KOG0285|consen 175 IKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS---------------GVY 239 (460)
T ss_pred eEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccc---------------eeE
Confidence 9999999999999997 5589999999874 45556677899999988776554443322 001
Q ss_pred EEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCcc
Q 001935 251 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS 330 (994)
Q Consensus 251 AlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s 330 (994)
+ -.++|.-.
T Consensus 240 ~------------------------------------------------------------------L~lhPTld----- 248 (460)
T KOG0285|consen 240 C------------------------------------------------------------------LDLHPTLD----- 248 (460)
T ss_pred E------------------------------------------------------------------Eeccccce-----
Confidence 1 11111100
Q ss_pred CCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCC
Q 001935 331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410 (994)
Q Consensus 331 ~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~ 410 (994)
.+++++.|.+++|||+.++..+..|.+|+.||..+.|.|-.-.++|+|.|++ ||+||+.. |
T Consensus 249 ----------vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t-vrlWDl~a-------g- 309 (460)
T KOG0285|consen 249 ----------VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST-VRLWDLRA-------G- 309 (460)
T ss_pred ----------eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce-EEEeeecc-------C-
Confidence 1235678999999999999999999999999999999998888999999665 99999964 3
Q ss_pred CccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccccccc
Q 001935 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (994)
Q Consensus 411 ~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~ 473 (994)
+.+..|. ++...|.+++..|.-..+|++|.|. ++-|++....--.++..|+
T Consensus 310 ---------kt~~tlt--~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~ 360 (460)
T KOG0285|consen 310 ---------KTMITLT--HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHN 360 (460)
T ss_pred ---------ceeEeee--cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccccc
Confidence 3444442 2445799999999998899888774 6889987654444555554
No 51
>PTZ00421 coronin; Provisional
Probab=99.62 E-value=2.7e-13 Score=159.86 Aligned_cols=250 Identities=12% Similarity=0.105 Sum_probs=164.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC------cceEeeeeccCCEEEEEEecCCCCCCCCC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS------NFNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g------~v~ells~hdGpV~~v~~lP~p~~s~~~D 124 (994)
..+|++.|..+.|... +.++|++|..+| ++|||+...+ .....+..|...|.+++|.|..
T Consensus 71 l~GH~~~V~~v~fsP~------d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~------- 137 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPF------DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA------- 137 (493)
T ss_pred EeCCCCCEEEEEEcCC------CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-------
Confidence 3568899999999731 245677776665 9999996432 2345677899999999998753
Q ss_pred CccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC-
Q 001935 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP- 202 (994)
Q Consensus 125 ~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~S~V~sV~~S~- 202 (994)
..+|+..+ .+++|+|||+++++.+..+.. ...|.+|+|++
T Consensus 138 -----~~iLaSgs---------------------------------~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd 179 (493)
T PTZ00421 138 -----MNVLASAG---------------------------------ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD 179 (493)
T ss_pred -----CCEEEEEe---------------------------------CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence 12555422 247899999999999988874 46899999987
Q ss_pred -CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCC
Q 001935 203 -RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (994)
Q Consensus 203 -~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~ 280 (994)
++|+++. ++.|+|||+++.+.+.++..|.... ...+. |.
T Consensus 180 G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~------------~~~~~---------------w~------------ 220 (493)
T PTZ00421 180 GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK------------SQRCL---------------WA------------ 220 (493)
T ss_pred CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc------------ceEEE---------------Ec------------
Confidence 4666654 6689999999988877776553210 00001 10
Q ss_pred CCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 001935 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (994)
Q Consensus 281 ~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~ 360 (994)
++++.+++ ...+...|+.|+|||+.+..
T Consensus 221 -------~~~~~ivt---------------------------------------------~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 221 -------KRKDLIIT---------------------------------------------LGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred -------CCCCeEEE---------------------------------------------EecCCCCCCeEEEEeCCCCC
Confidence 01111110 00123468999999998754
Q ss_pred -EEEEeccCC-CCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 001935 361 -IISQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC 438 (994)
Q Consensus 361 -~i~~~~aHt-spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIa 438 (994)
.+..+..|. ..+....|+++|.+|++++..+..||+|++.. + ..++.+. ......+..++
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~-------~----------~~~~~~~-~~s~~~~~g~~ 310 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN-------E----------RLTFCSS-YSSVEPHKGLC 310 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC-------C----------ceEEEee-ccCCCCCcceE
Confidence 444444443 45667789999999999986445699999964 2 2233222 22334678899
Q ss_pred EccCCCEEEEEeCCCeEEEEecCCC
Q 001935 439 FSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 439 FSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
|.| ++-+-...-.-.++|++...
T Consensus 311 ~~p--k~~~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 311 MMP--KWSLDTRKCEIARFYALTYH 333 (493)
T ss_pred ecc--cccccccceeeeEEEEecCC
Confidence 998 45555555566788888653
No 52
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=1.5e-14 Score=163.57 Aligned_cols=245 Identities=16% Similarity=0.174 Sum_probs=174.8
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
..++.+.|....|.. ..+.=+++...-++|||+.. +-...+++++=...|+.+.| ++.+.
T Consensus 22 ~~ke~~~vssl~fsp------~~P~d~aVt~S~rvqly~~~-~~~~~k~~srFk~~v~s~~f-------------R~DG~ 81 (487)
T KOG0310|consen 22 VHKEHNSVSSLCFSP------KHPYDFAVTSSVRVQLYSSV-TRSVRKTFSRFKDVVYSVDF-------------RSDGR 81 (487)
T ss_pred cccccCcceeEecCC------CCCCceEEecccEEEEEecc-hhhhhhhHHhhccceeEEEe-------------ecCCe
Confidence 455566677777753 12345777778889999974 44566777766677888874 44445
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC---CeEEE
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP---RIVAV 207 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~S~V~sV~~S~---~iLAV 207 (994)
|||. ||. -+.|+++|.++...+..+.- ..+|..+.|++ .+|+.
T Consensus 82 Llaa--GD~-------------------------------sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s 128 (487)
T KOG0310|consen 82 LLAA--GDE-------------------------------SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVS 128 (487)
T ss_pred EEEc--cCC-------------------------------cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEe
Confidence 7773 442 15799999888777777754 46999999988 36667
Q ss_pred EeCCe-EEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCc
Q 001935 208 GLATQ-IYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (994)
Q Consensus 208 gl~~~-I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~st 286 (994)
|.|+. +++||+.+......+.+|... .|..++.
T Consensus 129 ~sDd~v~k~~d~s~a~v~~~l~~htDY--------------------VR~g~~~-------------------------- 162 (487)
T KOG0310|consen 129 GSDDKVVKYWDLSTAYVQAELSGHTDY--------------------VRCGDIS-------------------------- 162 (487)
T ss_pred cCCCceEEEEEcCCcEEEEEecCCcce--------------------eEeeccc--------------------------
Confidence 77764 889999887654455554331 0111111
Q ss_pred CCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEEEEe
Q 001935 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQF 365 (994)
Q Consensus 287 Sp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~-~~i~~~ 365 (994)
|.++. .+.+|++||.|++||+... ..+..|
T Consensus 163 -~~~~h------------------------------------------------ivvtGsYDg~vrl~DtR~~~~~v~el 193 (487)
T KOG0310|consen 163 -PANDH------------------------------------------------IVVTGSYDGKVRLWDTRSLTSRVVEL 193 (487)
T ss_pred -cCCCe------------------------------------------------EEEecCCCceEEEEEeccCCceeEEe
Confidence 11111 1236789999999999987 444444
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 001935 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (994)
Q Consensus 366 ~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~ 445 (994)
.|..||..+.|=|+|.++|||+ |..|+|||+.. |. +.++.+ +.|+..|+|+.+.-|++.
T Consensus 194 -nhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~-------G~---------qll~~~--~~H~KtVTcL~l~s~~~r 252 (487)
T KOG0310|consen 194 -NHGCPVESVLALPSGSLIASAG--GNSVKVWDLTT-------GG---------QLLTSM--FNHNKTVTCLRLASDSTR 252 (487)
T ss_pred -cCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecC-------Cc---------eehhhh--hcccceEEEEEeecCCce
Confidence 4889999999999999999998 88999999853 31 455443 335678999999999999
Q ss_pred EEEEeCCCeEEEEecCCCCC
Q 001935 446 IAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 446 LAsgS~dGTVhIw~I~~~gg 465 (994)
|.++|.|+-|+||++..++-
T Consensus 253 LlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 253 LLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred EeecccccceEEEEccceEE
Confidence 99999999999999887753
No 53
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.7e-13 Score=144.73 Aligned_cols=260 Identities=14% Similarity=0.145 Sum_probs=172.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCC--cceEeee-eccCCEEEEEEecCCCCCCCCCCcc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDAS--NFNELVS-KRDGPVSFLQMQPFPVKDDGCEGFR 127 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~-G~qVWDv~~~g--~v~ells-~hdGpV~~v~~lP~p~~s~~~D~F~ 127 (994)
.++|+++|-.+.|.. + .+.+|++|..+ .++||++...+ .++.++. .|.-.|+.+++.|.+
T Consensus 10 ~~gh~~r~W~~awhp-----~-~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g---------- 73 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHP-----G-KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG---------- 73 (312)
T ss_pred ecCCCCcEEEEEecc-----C-CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC----------
Confidence 578999988888874 1 15688888765 59999986322 3444443 466789999999865
Q ss_pred ccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCC--eEEEEEeCC-CcEEEEEecC--
Q 001935 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--CYEHVLRFR-SSVCMVRCSP-- 202 (994)
Q Consensus 128 ~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktg--e~V~tL~f~-S~V~sV~~S~-- 202 (994)
.+||.. + .+.++.||.-..+ +++.+|+.| +.|.+|++++
T Consensus 74 ---~~La~a-----------------------S----------FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG 117 (312)
T KOG0645|consen 74 ---RYLASA-----------------------S----------FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG 117 (312)
T ss_pred ---cEEEEe-----------------------e----------ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC
Confidence 366741 1 3578999976654 688899866 6999999987
Q ss_pred CeEEEEeC-CeEEEEECCCCc---eeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCC
Q 001935 203 RIVAVGLA-TQIYCFDALTLE---NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT 278 (994)
Q Consensus 203 ~iLAVgl~-~~I~IwDa~Tle---~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qslt 278 (994)
++||.+.- ..|.||.+.... +.-.|..|..- .+- .+|+
T Consensus 118 ~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD--------------------VK~--------V~WH---------- 159 (312)
T KOG0645|consen 118 NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD--------------------VKH--------VIWH---------- 159 (312)
T ss_pred CEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc--------------------ccE--------EEEc----------
Confidence 79998764 569999876332 22223222210 000 1121
Q ss_pred CCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCC
Q 001935 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (994)
Q Consensus 279 p~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s 358 (994)
|..+ .++++++|.+|++|+...
T Consensus 160 ---------Pt~d-------------------------------------------------lL~S~SYDnTIk~~~~~~ 181 (312)
T KOG0645|consen 160 ---------PTED-------------------------------------------------LLFSCSYDNTIKVYRDED 181 (312)
T ss_pred ---------CCcc-------------------------------------------------eeEEeccCCeEEEEeecC
Confidence 0000 234678999999998873
Q ss_pred C---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCc-cccC------------------
Q 001935 359 R---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK-YDWN------------------ 416 (994)
Q Consensus 359 ~---~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~-~~~~------------------ 416 (994)
+ .++++|.+|+..|.+++|+|.|..|++++.+++ ++||........--++..- .+|.
T Consensus 182 dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 182 DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKE 260 (312)
T ss_pred CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEe
Confidence 2 488999999999999999999999999999766 8999843211000000000 0111
Q ss_pred ------CcceEEEEEecccccccEEEEEEccC-CCEEEEEeCCCeEEEEecC
Q 001935 417 ------SSHVHLYKLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 417 ------~s~~~l~~L~RG~t~a~I~sIaFSpD-g~~LAsgS~dGTVhIw~I~ 461 (994)
+...++++. .+.|.-.|++++|.|. +..|+++++||+|++|.+.
T Consensus 261 s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 261 SDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCCCchHHHHHhh-hcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 111112211 1233447999999995 7899999999999999874
No 54
>PTZ00420 coronin; Provisional
Probab=99.61 E-value=3.5e-13 Score=160.64 Aligned_cols=218 Identities=12% Similarity=0.148 Sum_probs=146.8
Q ss_pred EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCC
Q 001935 86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS 165 (994)
Q Consensus 86 ~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~ 165 (994)
++||+... ......+..|.++|..+++.|.. ..+||..+
T Consensus 56 I~L~~~~r-~~~v~~L~gH~~~V~~lafsP~~------------~~lLASgS---------------------------- 94 (568)
T PTZ00420 56 IRLENQMR-KPPVIKLKGHTSSILDLQFNPCF------------SEILASGS---------------------------- 94 (568)
T ss_pred EEeeecCC-CceEEEEcCCCCCEEEEEEcCCC------------CCEEEEEe----------------------------
Confidence 68998754 33455677899999999998752 12566422
Q ss_pred CCCCCCCCEEEEEECCCCe--------EEEEEe-CCCcEEEEEecCC---eEEE-EeCCeEEEEECCCCceeEEEeecCC
Q 001935 166 GNCVNSPTAVRFYSFQSHC--------YEHVLR-FRSSVCMVRCSPR---IVAV-GLATQIYCFDALTLENKFSVLTYPV 232 (994)
Q Consensus 166 ~~~~~sp~tVrLWDlktge--------~V~tL~-f~S~V~sV~~S~~---iLAV-gl~~~I~IwDa~Tle~l~tL~t~p~ 232 (994)
.+++|+|||+.++. .+.++. +...|.+|+|+|. +|++ +.++.|+|||+.+.+....+. ++.
T Consensus 95 -----~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~ 168 (568)
T PTZ00420 95 -----EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPK 168 (568)
T ss_pred -----CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCC
Confidence 14789999998642 234554 4468999999982 4555 557789999999887665553 211
Q ss_pred ccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhccccee
Q 001935 233 PQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKT 312 (994)
Q Consensus 233 p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~kt 312 (994)
. . ..++|. |++..
T Consensus 169 ~-------------V-------~Slsws---------------------------pdG~l-------------------- 181 (568)
T PTZ00420 169 K-------------L-------SSLKWN---------------------------IKGNL-------------------- 181 (568)
T ss_pred c-------------E-------EEEEEC---------------------------CCCCE--------------------
Confidence 0 0 011111 11111
Q ss_pred eccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEE-----EEECCCCCEEEEE
Q 001935 313 LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISA-----LCFDPSGTLLVTA 387 (994)
Q Consensus 313 lS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsa-----LaFSPdGtlLATA 387 (994)
++.+..|+.|+|||+.+++.+..+.+|...+.+ ..|++++.+|+|+
T Consensus 182 -----------------------------Lat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTt 232 (568)
T PTZ00420 182 -----------------------------LSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILST 232 (568)
T ss_pred -----------------------------EEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEE
Confidence 123457899999999999999999999887544 3467999999998
Q ss_pred EcCC---CeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 388 SVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 388 S~dG---t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
+.++ +.|+|||+... + ..+..+.-......+....+.+++.++++|+.|++|++|++..
T Consensus 233 G~d~~~~R~VkLWDlr~~------~----------~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 233 GFSKNNMREMKLWDLKNT------T----------SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EcCCCCccEEEEEECCCC------C----------CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 8765 36999998631 1 1333321111223445555677799999999999999999965
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=4.6e-14 Score=162.67 Aligned_cols=247 Identities=13% Similarity=0.151 Sum_probs=178.8
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEE-ecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcE
Q 001935 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLG-YQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (994)
Q Consensus 54 ~~kd~V~wa~Fd~le~~~~~~~~vL~lG-y~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpL 132 (994)
.+.|+|..+.|.- ..-.++.+ |.+.++|||.+. ....+-+.-.+-||+..+|++- .-
T Consensus 11 ~rSdRVKsVd~HP-------tePw~la~LynG~V~IWnyet-qtmVksfeV~~~PvRa~kfiaR--------------kn 68 (794)
T KOG0276|consen 11 SRSDRVKSVDFHP-------TEPWILAALYNGDVQIWNYET-QTMVKSFEVSEVPVRAAKFIAR--------------KN 68 (794)
T ss_pred ccCCceeeeecCC-------CCceEEEeeecCeeEEEeccc-ceeeeeeeecccchhhheeeec--------------cc
Confidence 3678888888762 23355555 555599999964 3344555566789998888731 12
Q ss_pred EEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCC--eEEEEe
Q 001935 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAVGL 209 (994)
Q Consensus 133 LAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~~--iLAVgl 209 (994)
++++..| +..||+|+..|++.|++++-| .-|++|+.+|. .+..+.
T Consensus 69 Wiv~GsD--------------------------------D~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsS 116 (794)
T KOG0276|consen 69 WIVTGSD--------------------------------DMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSS 116 (794)
T ss_pred eEEEecC--------------------------------CceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecC
Confidence 4443322 357999999999999999865 58999999984 455555
Q ss_pred CC-eEEEEECCC-CceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcC
Q 001935 210 AT-QIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (994)
Q Consensus 210 ~~-~I~IwDa~T-le~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stS 287 (994)
|+ .|++||-.. ..+.+++.+|..- .|. +||-+..
T Consensus 117 DDm~iKlW~we~~wa~~qtfeGH~Hy---------------VMq-----v~fnPkD------------------------ 152 (794)
T KOG0276|consen 117 DDMTIKLWDWENEWACEQTFEGHEHY---------------VMQ-----VAFNPKD------------------------ 152 (794)
T ss_pred CccEEEEeeccCceeeeeEEcCcceE---------------EEE-----EEecCCC------------------------
Confidence 55 799998553 2445555554331 111 1121110
Q ss_pred CCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 001935 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (994)
Q Consensus 288 p~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a 367 (994)
.-++++++-|++|+||.+.+..+.-+|.+
T Consensus 153 ---------------------------------------------------~ntFaS~sLDrTVKVWslgs~~~nfTl~g 181 (794)
T KOG0276|consen 153 ---------------------------------------------------PNTFASASLDRTVKVWSLGSPHPNFTLEG 181 (794)
T ss_pred ---------------------------------------------------ccceeeeeccccEEEEEcCCCCCceeeec
Confidence 00235677899999999999999999999
Q ss_pred CCCCeEEEEECCCC--CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 001935 368 HTSPISALCFDPSG--TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (994)
Q Consensus 368 HtspIsaLaFSPdG--tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~ 445 (994)
|...|+++.|=+-| -+|+||+. +++|+|||.++. .|+.+| .||++ .|..+.|.|.=-.
T Consensus 182 HekGVN~Vdyy~~gdkpylIsgaD-D~tiKvWDyQtk-----------------~CV~TL-eGHt~-Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 182 HEKGVNCVDYYTGGDKPYLISGAD-DLTIKVWDYQTK-----------------SCVQTL-EGHTN-NVSFVFFHPELPI 241 (794)
T ss_pred cccCcceEEeccCCCcceEEecCC-CceEEEeecchH-----------------HHHHHh-hcccc-cceEEEecCCCcE
Confidence 99999999998777 48999987 678999998642 467777 46554 5999999999999
Q ss_pred EEEEeCCCeEEEEecCCCCCCccc
Q 001935 446 IAIVSSKGTCHVFVLSPFGGDSGF 469 (994)
Q Consensus 446 LAsgS~dGTVhIw~I~~~gg~~~~ 469 (994)
+++||.|||++||.-.+|..+.++
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred EEEecCCccEEEecCcceehhhhh
Confidence 999999999999998888776544
No 56
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=8.6e-14 Score=161.40 Aligned_cols=240 Identities=19% Similarity=0.215 Sum_probs=173.4
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEE
Q 001935 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL 134 (994)
Q Consensus 56 kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLA 134 (994)
.+.|+-+.+.. .++.|++|+.+| ++|||+......+.+...|.+.|.++++.. .++
T Consensus 217 ~~~vtSv~ws~-------~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~----------------~~l 273 (484)
T KOG0305|consen 217 EELVTSVKWSP-------DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS----------------SVL 273 (484)
T ss_pred CCceEEEEECC-------CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC----------------ceE
Confidence 56666666653 678999999998 799999776666665555889999998761 233
Q ss_pred EEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEE-Ee-CCCcEEEEEecC--CeEEEEe-
Q 001935 135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHV-LR-FRSSVCMVRCSP--RIVAVGL- 209 (994)
Q Consensus 135 vVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~t-L~-f~S~V~sV~~S~--~iLAVgl- 209 (994)
. +|. -++.|.++|++..+.+.. +. +...|+.+++++ +.||+|.
T Consensus 274 s-sGs-------------------------------r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn 321 (484)
T KOG0305|consen 274 S-SGS-------------------------------RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN 321 (484)
T ss_pred E-Eec-------------------------------CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC
Confidence 3 221 136799999998875444 65 446899999988 6888855
Q ss_pred CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCC
Q 001935 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (994)
Q Consensus 210 ~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~ 289 (994)
|+.++|||..+.+.++++..|... .-.+|++| |.
T Consensus 322 DN~~~Iwd~~~~~p~~~~~~H~aA-------------VKA~awcP------------~q--------------------- 355 (484)
T KOG0305|consen 322 DNVVFIWDGLSPEPKFTFTEHTAA-------------VKALAWCP------------WQ--------------------- 355 (484)
T ss_pred ccceEeccCCCccccEEEecccee-------------eeEeeeCC------------Cc---------------------
Confidence 568999999888888888887552 12344443 10
Q ss_pred CCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCC
Q 001935 290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT 369 (994)
Q Consensus 290 ~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHt 369 (994)
..++| .| -|..|+.|++||..+++.+..+...
T Consensus 356 -~~lLA-----------sG-----------------------------------GGs~D~~i~fwn~~~g~~i~~vdtg- 387 (484)
T KOG0305|consen 356 -SGLLA-----------TG-----------------------------------GGSADRCIKFWNTNTGARIDSVDTG- 387 (484)
T ss_pred -cCceE-----------Ec-----------------------------------CCCcccEEEEEEcCCCcEecccccC-
Confidence 01111 00 1357999999999999888776654
Q ss_pred CCeEEEEECCCCCEEEEEE-cCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 001935 370 SPISALCFDPSGTLLVTAS-VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (994)
Q Consensus 370 spIsaLaFSPdGtlLATAS-~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs 448 (994)
+.|..|.|++..+-|+++- .-...|.||+... ...+..| -|| ...|..+++||||..|++
T Consensus 388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-----------------~~~~~~l-~gH-~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 388 SQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-----------------MKLVAEL-LGH-TSRVLYLALSPDGETIVT 448 (484)
T ss_pred CceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-----------------cceeeee-cCC-cceeEEEEECCCCCEEEE
Confidence 6899999999997666553 3234699999732 1244444 354 467999999999999999
Q ss_pred EeCCCeEEEEecCCC
Q 001935 449 VSSKGTCHVFVLSPF 463 (994)
Q Consensus 449 gS~dGTVhIw~I~~~ 463 (994)
++.|+|+++|++-+.
T Consensus 449 ~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 449 GAADETLRFWNLFDE 463 (484)
T ss_pred ecccCcEEeccccCC
Confidence 999999999999765
No 57
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=8.1e-13 Score=143.59 Aligned_cols=245 Identities=13% Similarity=0.168 Sum_probs=158.7
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEec-CcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~-~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
.+....|.-..|+. ++.+|+++.+ +.+||||+.. +....++..+.=.|..+.|.-. .. .
T Consensus 11 ~~~~~~i~sl~fs~-------~G~~litss~dDsl~LYd~~~-g~~~~ti~skkyG~~~~~Fth~-----------~~-~ 70 (311)
T KOG1446|consen 11 RETNGKINSLDFSD-------DGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKYGVDLACFTHH-----------SN-T 70 (311)
T ss_pred ccCCCceeEEEecC-------CCCEEEEecCCCeEEEEEcCC-CceeeEeecccccccEEEEecC-----------Cc-e
Confidence 33678888888874 5667777655 5899999965 4444555444334666665511 11 1
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC---CeEEE
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAV 207 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~---~iLAV 207 (994)
++. +. + . -+.+||.-++.+.++++.+..| ..|.+|..+| .+|.+
T Consensus 71 ~i~--sS--t------------------k----------~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~ 118 (311)
T KOG1446|consen 71 VIH--SS--T------------------K----------EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSS 118 (311)
T ss_pred EEE--cc--C------------------C----------CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEec
Confidence 222 10 0 0 1368999999999999999765 5899999999 47778
Q ss_pred EeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcC
Q 001935 208 GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (994)
Q Consensus 208 gl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stS 287 (994)
++|++|++||++..++...+.-... ..+ ||-+.
T Consensus 119 S~D~tvrLWDlR~~~cqg~l~~~~~---------------pi~-------AfDp~------------------------- 151 (311)
T KOG1446|consen 119 SLDKTVRLWDLRVKKCQGLLNLSGR---------------PIA-------AFDPE------------------------- 151 (311)
T ss_pred ccCCeEEeeEecCCCCceEEecCCC---------------cce-------eECCC-------------------------
Confidence 8899999999997776544432111 112 22221
Q ss_pred CCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC--cEEEEe
Q 001935 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--AIISQF 365 (994)
Q Consensus 288 p~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~--~~i~~~ 365 (994)
|-.+ |.+...+.|++||+..- ..-.+|
T Consensus 152 --GLif-------------------------------------------------A~~~~~~~IkLyD~Rs~dkgPF~tf 180 (311)
T KOG1446|consen 152 --GLIF-------------------------------------------------ALANGSELIKLYDLRSFDKGPFTTF 180 (311)
T ss_pred --CcEE-------------------------------------------------EEecCCCeEEEEEecccCCCCceeE
Confidence 1111 11122337889988753 233344
Q ss_pred c---cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 001935 366 K---AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (994)
Q Consensus 366 ~---aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpD 442 (994)
. +-....+.|.|||||++|.-... +..|.|.|.-. |+ ..+-+.+.+...+- --+.+|+||
T Consensus 181 ~i~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~-------G~--------~~~tfs~~~~~~~~-~~~a~ftPd 243 (311)
T KOG1446|consen 181 SITDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFD-------GT--------VKSTFSGYPNAGNL-PLSATFTPD 243 (311)
T ss_pred ccCCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccC-------Cc--------EeeeEeeccCCCCc-ceeEEECCC
Confidence 3 33678899999999999887777 44589998743 41 12333333322111 257899999
Q ss_pred CCEEEEEeCCCeEEEEecCCCC
Q 001935 443 SQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 443 g~~LAsgS~dGTVhIw~I~~~g 464 (994)
|++|.+|+.||+||||.++...
T Consensus 244 s~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred CcEEEEecCCCcEEEEEcCCCc
Confidence 9999999999999999996543
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.58 E-value=1.2e-14 Score=158.45 Aligned_cols=240 Identities=15% Similarity=0.173 Sum_probs=174.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~-G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
.-+|++-|+...|| .++|+.|..+ .++|||++ +++..+++-+|-..|-.+.|..
T Consensus 233 L~GHtGSVLCLqyd---------~rviisGSSDsTvrvWDv~-tge~l~tlihHceaVLhlrf~n--------------- 287 (499)
T KOG0281|consen 233 LTGHTGSVLCLQYD---------ERVIVSGSSDSTVRVWDVN-TGEPLNTLIHHCEAVLHLRFSN--------------- 287 (499)
T ss_pred hhcCCCcEEeeecc---------ceEEEecCCCceEEEEecc-CCchhhHHhhhcceeEEEEEeC---------------
Confidence 34567777777776 3688888775 59999995 6888888888888899888762
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEE---EEE-eCCCcEEEEEecCCeEE
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE---HVL-RFRSSVCMVRCSPRIVA 206 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V---~tL-~f~S~V~sV~~S~~iLA 206 (994)
.++..++ .++++.+||+.+-..+ ++| .+...|..|.|+.++++
T Consensus 288 g~mvtcS---------------------------------kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIV 334 (499)
T KOG0281|consen 288 GYMVTCS---------------------------------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV 334 (499)
T ss_pred CEEEEec---------------------------------CCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEE
Confidence 1444432 2478999999876532 233 35578999999999888
Q ss_pred EEeC-CeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCC
Q 001935 207 VGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (994)
Q Consensus 207 Vgl~-~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~s 285 (994)
.+.. .+|++|++.|.+.+.+|.+|..- +|...+
T Consensus 335 sASgDRTikvW~~st~efvRtl~gHkRG-----------------------IAClQY----------------------- 368 (499)
T KOG0281|consen 335 SASGDRTIKVWSTSTCEFVRTLNGHKRG-----------------------IACLQY----------------------- 368 (499)
T ss_pred EecCCceEEEEeccceeeehhhhccccc-----------------------ceehhc-----------------------
Confidence 7654 57999999999999888876441 111110
Q ss_pred cCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 001935 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (994)
Q Consensus 286 tSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~ 365 (994)
.+.+ +.+++.|.+|++||+..|.++..+
T Consensus 369 ----r~rl------------------------------------------------vVSGSSDntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 369 ----RDRL------------------------------------------------VVSGSSDNTIRLWDIECGACLRVL 396 (499)
T ss_pred ----cCeE------------------------------------------------EEecCCCceEEEEeccccHHHHHH
Confidence 0111 124577899999999999999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 001935 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (994)
Q Consensus 366 ~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~ 445 (994)
++|..-|.++.|+ .+.++++.-||+ |+|||+...... . ..+.--++..+-+ +...|..+.|. ...
T Consensus 397 eGHEeLvRciRFd--~krIVSGaYDGk-ikvWdl~aaldp---r-----a~~~~~Cl~~lv~--hsgRVFrLQFD--~fq 461 (499)
T KOG0281|consen 397 EGHEELVRCIRFD--NKRIVSGAYDGK-IKVWDLQAALDP---R-----APASTLCLRTLVE--HSGRVFRLQFD--EFQ 461 (499)
T ss_pred hchHHhhhheeec--Cceeeeccccce-EEEEecccccCC---c-----ccccchHHHhhhh--ccceeEEEeec--ceE
Confidence 9999999999995 468999999887 999998642100 0 0111124445544 34578999995 578
Q ss_pred EEEEeCCCeEEEEecCC
Q 001935 446 IAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 446 LAsgS~dGTVhIw~I~~ 462 (994)
|+++|.|.||-||+...
T Consensus 462 IvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 462 IISSSHDDTILIWDFLN 478 (499)
T ss_pred EEeccCCCeEEEEEcCC
Confidence 99999999999999765
No 59
>PTZ00420 coronin; Provisional
Probab=99.58 E-value=9.7e-13 Score=156.91 Aligned_cols=252 Identities=10% Similarity=0.116 Sum_probs=160.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc-------ceEeeeeccCCEEEEEEecCCCCCCCC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN-------FNELVSKRDGPVSFLQMQPFPVKDDGC 123 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~-------v~ells~hdGpV~~v~~lP~p~~s~~~ 123 (994)
..+|++.|..+.|.. ....+|++|..+| ++|||+...+. ....+..|.+.|.++++.|+..
T Consensus 70 L~gH~~~V~~lafsP------~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~----- 138 (568)
T PTZ00420 70 LKGHTSSILDLQFNP------CFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNY----- 138 (568)
T ss_pred EcCCCCCEEEEEEcC------CCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCC-----
Confidence 456888999999863 1245787777766 89999964332 1235677899999999998641
Q ss_pred CCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC-
Q 001935 124 EGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP- 202 (994)
Q Consensus 124 D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~- 202 (994)
.+||..+ .+++|+|||+++++.+..+.++..|.++.|++
T Consensus 139 -------~iLaSgS---------------------------------~DgtIrIWDl~tg~~~~~i~~~~~V~Slswspd 178 (568)
T PTZ00420 139 -------YIMCSSG---------------------------------FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIK 178 (568)
T ss_pred -------eEEEEEe---------------------------------CCCeEEEEECCCCcEEEEEecCCcEEEEEECCC
Confidence 1334321 14789999999999988888888999999987
Q ss_pred -CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCC
Q 001935 203 -RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (994)
Q Consensus 203 -~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~ 280 (994)
++|+++. +++|+|||+++++.+.++..|... ....++. ...++
T Consensus 179 G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~-------------~~s~~v~--~~~fs-------------------- 223 (568)
T PTZ00420 179 GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGG-------------KNTKNIW--IDGLG-------------------- 223 (568)
T ss_pred CCEEEEEecCCEEEEEECCCCcEEEEEecccCC-------------ceeEEEE--eeeEc--------------------
Confidence 5777655 668999999999888877765431 0001110 00111
Q ss_pred CCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCC-C
Q 001935 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-R 359 (994)
Q Consensus 281 ~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s-~ 359 (994)
++++.+++ ...+...++.|+|||+.+ .
T Consensus 224 -------~d~~~IlT---------------------------------------------tG~d~~~~R~VkLWDlr~~~ 251 (568)
T PTZ00420 224 -------GDDNYILS---------------------------------------------TGFSKNNMREMKLWDLKNTT 251 (568)
T ss_pred -------CCCCEEEE---------------------------------------------EEcCCCCccEEEEEECCCCC
Confidence 11111111 000112346899999995 4
Q ss_pred cEEEEecc--CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEE
Q 001935 360 AIISQFKA--HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDI 437 (994)
Q Consensus 360 ~~i~~~~a--HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sI 437 (994)
+.+..+.. +...+...-+.++|.+|++|+.|+ +||+|++.. + .++.|....+...+..+
T Consensus 252 ~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~-tIr~~e~~~-------~-----------~~~~l~~~~s~~p~~g~ 312 (568)
T PTZ00420 252 SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG-NCRYYQHSL-------G-----------SIRKVNEYKSCSPFRSF 312 (568)
T ss_pred CceEEEEecCCccceEEeeeCCCCCEEEEEECCC-eEEEEEccC-------C-----------cEEeecccccCCCccce
Confidence 55555443 344454555567799999998855 599999853 2 23444444345678899
Q ss_pred EEccCCCEEEEEeCCCeEEEEecCC
Q 001935 438 CFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 438 aFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
+|.|+- .+=...-.-.++|.+..
T Consensus 313 ~f~Pkr--~~dv~~cEi~R~~kl~~ 335 (568)
T PTZ00420 313 GFLPKQ--ICDVYKCEIGRVYKNEN 335 (568)
T ss_pred EEcccc--ccCchhhhHhHHhhhcC
Confidence 999962 22223333455666543
No 60
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.57 E-value=2e-13 Score=147.40 Aligned_cols=254 Identities=18% Similarity=0.178 Sum_probs=170.6
Q ss_pred CcceeehhhhhcccccccccC-CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCE
Q 001935 30 ASTVASTVRSAGASVAASISN-ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPV 108 (994)
Q Consensus 30 a~~~~~~~~s~~~s~a~~i~~-~~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV 108 (994)
|++=..|||---...+|...+ ....+...|+-+.|.. + ..++++.|.++.+++||+.. +++ ..+.-|++||
T Consensus 45 A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd----d--gskVf~g~~Dk~~k~wDL~S-~Q~-~~v~~Hd~pv 116 (347)
T KOG0647|consen 45 AGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD----D--GSKVFSGGCDKQAKLWDLAS-GQV-SQVAAHDAPV 116 (347)
T ss_pred ecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc----C--CceEEeeccCCceEEEEccC-CCe-eeeeecccce
Confidence 445556666654444333333 2244677788888864 2 24566666677799999954 544 5678899999
Q ss_pred EEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEE
Q 001935 109 SFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHV 188 (994)
Q Consensus 109 ~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~t 188 (994)
+.+.+.+.+.. ++|+ +|+|| .+||+||.++...+.+
T Consensus 117 kt~~wv~~~~~-----------~cl~-----------------------TGSWD----------KTlKfWD~R~~~pv~t 152 (347)
T KOG0647|consen 117 KTCHWVPGMNY-----------QCLV-----------------------TGSWD----------KTLKFWDTRSSNPVAT 152 (347)
T ss_pred eEEEEecCCCc-----------ceeE-----------------------ecccc----------cceeecccCCCCeeee
Confidence 99999976521 2444 25675 7899999999999999
Q ss_pred EeCCCcEEEEEecCCeEEEEeCC-eEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeec
Q 001935 189 LRFRSSVCMVRCSPRIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLS 267 (994)
Q Consensus 189 L~f~S~V~sV~~S~~iLAVgl~~-~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iw 267 (994)
+.++.+||++.+-..++||++++ .|.+|++.+....+.....| +-+..|.||...+.-
T Consensus 153 ~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~Sp------------------Lk~Q~R~va~f~d~~--- 211 (347)
T KOG0647|consen 153 LQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESP------------------LKWQTRCVACFQDKD--- 211 (347)
T ss_pred eeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCc------------------ccceeeEEEEEecCC---
Confidence 99999999999998999999887 59999987655433322222 223345554332210
Q ss_pred cCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCC
Q 001935 268 NSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDN 347 (994)
Q Consensus 268 d~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~ 347 (994)
+ .+-++.
T Consensus 212 -----------------------~--------------------------------------------------~alGsi 218 (347)
T KOG0647|consen 212 -----------------------G--------------------------------------------------FALGSI 218 (347)
T ss_pred -----------------------c--------------------------------------------------eEeeee
Confidence 0 001234
Q ss_pred CCeEEEEECCCC--cEEEEeccCCC---------CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccC
Q 001935 348 AGIVVVKDFVTR--AIISQFKAHTS---------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 416 (994)
Q Consensus 348 dG~V~VwDl~s~--~~i~~~~aHts---------pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~ 416 (994)
.|.|-|..+..+ +.--.|+.|.. .|+.|+|+|.-..|||++.||+ +..||-..
T Consensus 219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGt-f~FWDkda--------------- 282 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGT-FSFWDKDA--------------- 282 (347)
T ss_pred cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCce-EEEecchh---------------
Confidence 555555555544 33345566652 5788999999999999999887 99999632
Q ss_pred CcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 001935 417 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (994)
Q Consensus 417 ~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsg 449 (994)
+..|.... .+..+|.+.+|+.+|.++|-+
T Consensus 283 --r~kLk~s~--~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 283 --RTKLKTSE--THPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred --hhhhhccC--cCCCccceeEecCCCCEEEEE
Confidence 12333332 245789999999999888765
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.56 E-value=2e-13 Score=143.42 Aligned_cols=240 Identities=15% Similarity=0.153 Sum_probs=170.9
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcE
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpL 132 (994)
..+++-|..++|+. + ..-+|+.|.+..+++|+. ..|.+.++.++|.-.|..++..-+. + -
T Consensus 14 ~~~qgaV~avryN~----d--GnY~ltcGsdrtvrLWNp-~rg~liktYsghG~EVlD~~~s~Dn-----------s--k 73 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNV----D--GNYCLTCGSDRTVRLWNP-LRGALIKTYSGHGHEVLDAALSSDN-----------S--K 73 (307)
T ss_pred cccccceEEEEEcc----C--CCEEEEcCCCceEEeecc-cccceeeeecCCCceeeeccccccc-----------c--c
Confidence 55788899999984 1 235777788888999998 5688999999999889888766332 1 2
Q ss_pred EEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCC--eEEE-E
Q 001935 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAV-G 208 (994)
Q Consensus 133 LAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~~--iLAV-g 208 (994)
++.+.+ ++.|.+||+.+|+.++.++-| ..|..|+||.. +++. +
T Consensus 74 f~s~Gg---------------------------------Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs 120 (307)
T KOG0316|consen 74 FASCGG---------------------------------DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGS 120 (307)
T ss_pred cccCCC---------------------------------CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEecc
Confidence 343211 368999999999999999765 68999999983 5555 4
Q ss_pred eCCeEEEEECCC--CceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCc
Q 001935 209 LATQIYCFDALT--LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (994)
Q Consensus 209 l~~~I~IwDa~T--le~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~st 286 (994)
.+..+++||-+. .++++.+.+... +.+++-
T Consensus 121 fD~s~r~wDCRS~s~ePiQildea~D---------------~V~Si~--------------------------------- 152 (307)
T KOG0316|consen 121 FDSSVRLWDCRSRSFEPIQILDEAKD---------------GVSSID--------------------------------- 152 (307)
T ss_pred ccceeEEEEcccCCCCccchhhhhcC---------------ceeEEE---------------------------------
Confidence 466899999764 333333332111 000000
Q ss_pred CCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 001935 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (994)
Q Consensus 287 Sp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~ 366 (994)
++++ -+..++.||+++.||+..++......
T Consensus 153 --------------------------v~~h------------------------eIvaGS~DGtvRtydiR~G~l~sDy~ 182 (307)
T KOG0316|consen 153 --------------------------VAEH------------------------EIVAGSVDGTVRTYDIRKGTLSSDYF 182 (307)
T ss_pred --------------------------eccc------------------------EEEeeccCCcEEEEEeecceeehhhc
Confidence 0000 12246789999999999998877666
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCCE
Q 001935 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQW 445 (994)
Q Consensus 367 aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a-~I~sIaFSpDg~~ 445 (994)
+| ||++++|++||+.+..++-+ .++|+-|-.+ | +.|..+ .|+.+. -=.+.+|+.-...
T Consensus 183 g~--pit~vs~s~d~nc~La~~l~-stlrLlDk~t-------G----------klL~sY-kGhkn~eykldc~l~qsdth 241 (307)
T KOG0316|consen 183 GH--PITSVSFSKDGNCSLASSLD-STLRLLDKET-------G----------KLLKSY-KGHKNMEYKLDCCLNQSDTH 241 (307)
T ss_pred CC--cceeEEecCCCCEEEEeecc-ceeeecccch-------h----------HHHHHh-cccccceeeeeeeeccccee
Confidence 66 99999999999998888884 4599988643 4 233332 455443 2346788888899
Q ss_pred EEEEeCCCeEEEEecCCCC
Q 001935 446 IAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 446 LAsgS~dGTVhIw~I~~~g 464 (994)
+++||.||.|.+|++....
T Consensus 242 V~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 242 VFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred EEeccCCceEEEEEeccce
Confidence 9999999999999997643
No 62
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.56 E-value=3.3e-12 Score=140.79 Aligned_cols=315 Identities=16% Similarity=0.193 Sum_probs=192.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEec-CcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~-~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
+..|++.|..+..+ |..+++++|.. +-.-||++. ++++.-.+-+|...|.++.|+- ..
T Consensus 60 F~~H~~svFavsl~-------P~~~l~aTGGgDD~AflW~~~-~ge~~~eltgHKDSVt~~~Fsh-------------dg 118 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLH-------PNNNLVATGGGDDLAFLWDIS-TGEFAGELTGHKDSVTCCSFSH-------------DG 118 (399)
T ss_pred hhhcCCceEEEEeC-------CCCceEEecCCCceEEEEEcc-CCcceeEecCCCCceEEEEEcc-------------Cc
Confidence 44567777666654 24567777765 457899995 5667777778888999998763 33
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEE
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV 207 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--~iLAV 207 (994)
.|||. || .+++|+||...++.....|... +.|.=+.++| .+|+.
T Consensus 119 tlLAT--Gd-------------------------------msG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illA 165 (399)
T KOG0296|consen 119 TLLAT--GD-------------------------------MSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLA 165 (399)
T ss_pred eEEEe--cC-------------------------------CCccEEEEEcccCceEEEeecccCceEEEEecccccEEEe
Confidence 57773 32 2478999999999988887533 3555567777 46666
Q ss_pred Ee-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEE-cccEE-EEccCCeeeccC--Ccc-----CCCcC
Q 001935 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAV-GPRWL-AYASNTLLLSNS--GRL-----SPQNL 277 (994)
Q Consensus 208 gl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAl-gpRwL-Ayas~~~~iwd~--G~~-----s~qsl 277 (994)
|. ++.|++|.+......+.+.+|..|- . .|.+.= |-|.+ +|...++++|+- |.. +.+++
T Consensus 166 G~~DGsvWmw~ip~~~~~kv~~Gh~~~c-t----------~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~ 234 (399)
T KOG0296|consen 166 GSTDGSVWMWQIPSQALCKVMSGHNSPC-T----------CGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGL 234 (399)
T ss_pred ecCCCcEEEEECCCcceeeEecCCCCCc-c----------cccccCCCceEEEEecCceEEEEecCCCceeEEecccccC
Confidence 65 4579999998876666666665431 0 011100 22333 466667888873 311 01111
Q ss_pred CCCCCCCCcCCCCCceEEEeehhhhhhh---hcccceeecc-ccccccCCC-----CCCCccCCCccccccccc-cccCC
Q 001935 278 TPSGVSPSTSPGGSSLVARYAMEHSKQF---AAGLSKTLSK-YCQELLPDG-----SSSPVSPNSVWKVGRHAG-ADMDN 347 (994)
Q Consensus 278 tp~~~S~stSp~~gsLVa~~A~dssk~l---a~Gi~ktlS~-y~~~l~p~~-----s~s~~s~s~~~k~g~~~~-as~s~ 347 (994)
..+.++. + ..+.++.....++...+ +.|.+....+ -...+.+.. +.....++.. +++ |-+.-
T Consensus 235 ~~~~~~~--~-~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~-----lpL~A~G~v 306 (399)
T KOG0296|consen 235 ELPCISL--N-LAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSK-----LPLAACGSV 306 (399)
T ss_pred cCCcccc--c-cccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccc-----cchhhcccc
Confidence 1111111 1 11222221111111111 1111111111 001111110 1111111111 122 46778
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
||+|.|||+...+. +++-.|..+|..|.|-+ -.+|+||..+|. ||.||.+. | ++++++ +
T Consensus 307 dG~i~iyD~a~~~~-R~~c~he~~V~~l~w~~-t~~l~t~c~~g~-v~~wDaRt-------G----------~l~~~y-~ 365 (399)
T KOG0296|consen 307 DGTIAIYDLAASTL-RHICEHEDGVTKLKWLN-TDYLLTACANGK-VRQWDART-------G----------QLKFTY-T 365 (399)
T ss_pred cceEEEEecccchh-heeccCCCceEEEEEcC-cchheeeccCce-EEeeeccc-------c----------ceEEEE-e
Confidence 99999999997654 55667999999999999 578888888776 99999864 5 577777 5
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
|| +..|++++.+||.++++++|.|+|.+||.+.
T Consensus 366 GH-~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 366 GH-QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cC-chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 64 5789999999999999999999999999875
No 63
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.56 E-value=1.8e-12 Score=147.68 Aligned_cols=131 Identities=21% Similarity=0.235 Sum_probs=94.1
Q ss_pred ccccCCCCeEEEEECCCCcEEEEec---cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCc-----ccCCC-CC--
Q 001935 342 GADMDNAGIVVVKDFVTRAIISQFK---AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC-----MRSGS-GN-- 410 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~~~i~~~~---aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~-----~~~~s-G~-- 410 (994)
+++++.||+|.|||=.+++.+..|. ||++.|.+|+|+||++.++|+|. +.++||||+.... ....+ ..
T Consensus 205 Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa-Dkt~KIWdVs~~slv~t~~~~~~v~dqq 283 (603)
T KOG0318|consen 205 FATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA-DKTIKIWDVSTNSLVSTWPMGSTVEDQQ 283 (603)
T ss_pred EEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC-CceEEEEEeeccceEEEeecCCchhceE
Confidence 5678899999999999999999998 99999999999999999999999 5679999996531 00000 00
Q ss_pred CccccCCcc------------------eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccc-cc
Q 001935 411 HKYDWNSSH------------------VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF-QT 471 (994)
Q Consensus 411 ~~~~~~~s~------------------~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~-~~ 471 (994)
..-=|...+ ..+ ....| |+..|++++-+||+++|.++|.||.|.=|++.......-. +.
T Consensus 284 vG~lWqkd~lItVSl~G~in~ln~~d~~~~-~~i~G-HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~ 361 (603)
T KOG0318|consen 284 VGCLWQKDHLITVSLSGTINYLNPSDPSVL-KVISG-HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKG 361 (603)
T ss_pred EEEEEeCCeEEEEEcCcEEEEecccCCChh-heecc-cccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccccc
Confidence 000011000 011 12235 3556999999999999999999999999998764333222 55
Q ss_pred ccCC
Q 001935 472 LSSQ 475 (994)
Q Consensus 472 H~s~ 475 (994)
|+.+
T Consensus 362 h~nq 365 (603)
T KOG0318|consen 362 HTNQ 365 (603)
T ss_pred ccce
Confidence 6543
No 64
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.56 E-value=1.5e-13 Score=163.41 Aligned_cols=195 Identities=17% Similarity=0.147 Sum_probs=128.3
Q ss_pred CCccccccCCcCCCCCCC--CCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEE-EEeCCeEEEEECCCCcee
Q 001935 151 SHLGGVRDGMMDSQSGNC--VNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVA-VGLATQIYCFDALTLENK 224 (994)
Q Consensus 151 ~~~~~vr~g~~d~~~~~~--~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~---~iLA-Vgl~~~I~IwDa~Tle~l 224 (994)
||+..|-|-+|... ++- ...++|||||++...+|++++.|..-|.+|+|+| ++++ -++|++|+||++.+-+..
T Consensus 367 GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv 445 (712)
T KOG0283|consen 367 GHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV 445 (712)
T ss_pred ccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE
Confidence 44455555566321 222 2347999999999999999999999999999999 4444 577999999998865432
Q ss_pred EEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhh
Q 001935 225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ 304 (994)
Q Consensus 225 ~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~ 304 (994)
. ..... .-+.+..++|+|...+
T Consensus 446 ~---W~Dl~---------------------------------------------~lITAvcy~PdGk~av---------- 467 (712)
T KOG0283|consen 446 D---WNDLR---------------------------------------------DLITAVCYSPDGKGAV---------- 467 (712)
T ss_pred e---ehhhh---------------------------------------------hhheeEEeccCCceEE----------
Confidence 1 11110 0011112233322111
Q ss_pred hhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec--c-------CCCCeEEE
Q 001935 305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK--A-------HTSPISAL 375 (994)
Q Consensus 305 la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~--a-------HtspIsaL 375 (994)
-|..+|.+++|+....+....+. - |. .|+.|
T Consensus 468 ---------------------------------------IGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~ 507 (712)
T KOG0283|consen 468 ---------------------------------------IGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGL 507 (712)
T ss_pred ---------------------------------------EEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeee
Confidence 23567888888888776554432 1 33 79999
Q ss_pred EECCCCC--EEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCCEEEEEeCC
Q 001935 376 CFDPSGT--LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSK 452 (994)
Q Consensus 376 aFSPdGt--lLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a-~I~sIaFSpDg~~LAsgS~d 452 (994)
.|.|.-. +|+|. . +..|||||.... ..+.+| .|+.+. .=...+|+.||++|+++|+|
T Consensus 508 Q~~p~~~~~vLVTS-n-DSrIRI~d~~~~-----------------~lv~Kf-KG~~n~~SQ~~Asfs~Dgk~IVs~seD 567 (712)
T KOG0283|consen 508 QFFPGDPDEVLVTS-N-DSRIRIYDGRDK-----------------DLVHKF-KGFRNTSSQISASFSSDGKHIVSASED 567 (712)
T ss_pred EecCCCCCeEEEec-C-CCceEEEeccch-----------------hhhhhh-cccccCCcceeeeEccCCCEEEEeecC
Confidence 9987654 66654 4 345999998431 244455 344443 23457999999999999999
Q ss_pred CeEEEEecCCCC
Q 001935 453 GTCHVFVLSPFG 464 (994)
Q Consensus 453 GTVhIw~I~~~g 464 (994)
.-|+||++....
T Consensus 568 s~VYiW~~~~~~ 579 (712)
T KOG0283|consen 568 SWVYIWKNDSFN 579 (712)
T ss_pred ceEEEEeCCCCc
Confidence 999999986543
No 65
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=8.3e-14 Score=165.00 Aligned_cols=212 Identities=13% Similarity=0.172 Sum_probs=151.2
Q ss_pred CEEEEEECCCCeEEEEEe-CCCcEEEEEecCC--eEEEEeCC-eEEEEECCCCceeEEEeecCCccccCCCccccccCcc
Q 001935 173 TAVRFYSFQSHCYEHVLR-FRSSVCMVRCSPR--IVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~-f~S~V~sV~~S~~--iLAVgl~~-~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~g 248 (994)
+.|++||-+=|.+++.+. +.++|++|.|+++ ++|+|.|+ +|++|+..+.+++++|.+|-.-
T Consensus 31 G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY--------------- 95 (1202)
T KOG0292|consen 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY--------------- 95 (1202)
T ss_pred ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce---------------
Confidence 689999999999999884 5689999999984 67776666 7999999999999999876431
Q ss_pred ceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCC
Q 001935 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (994)
Q Consensus 249 plAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~ 328 (994)
.|-+.|....+
T Consensus 96 -----VRt~~FHheyP---------------------------------------------------------------- 106 (1202)
T KOG0292|consen 96 -----VRTVFFHHEYP---------------------------------------------------------------- 106 (1202)
T ss_pred -----eEEeeccCCCc----------------------------------------------------------------
Confidence 12122221100
Q ss_pred ccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCC
Q 001935 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (994)
Q Consensus 329 ~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~s 408 (994)
| +.+++.|.+|+||+-.++++++.+.+|.+-|.|-+|.|...++++||- +.+|||||+.---..+..
T Consensus 107 ------W------IlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-DQTVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 107 ------W------ILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-DQTVRVWDISGLRKKNKA 173 (1202)
T ss_pred ------e------EEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc-cceEEEEeecchhccCCC
Confidence 1 125678999999999999999999999999999999999999999999 456999999521100000
Q ss_pred -C--------C-CccccCC--cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCC--cccccccC
Q 001935 409 -G--------N-HKYDWNS--SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD--SGFQTLSS 474 (994)
Q Consensus 409 -G--------~-~~~~~~~--s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~--~~~~~H~s 474 (994)
| . ...+.-+ .....+.| .||++. |.-+||.|.--.|++|++|..|++|.++..+-= .+-+.|..
T Consensus 174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VL-EGHDRG-VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n 251 (1202)
T KOG0292|consen 174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVL-EGHDRG-VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN 251 (1202)
T ss_pred CCCchhhhhccccchhhcCCcCeeeeeee-cccccc-cceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC
Confidence 1 0 0001111 11122333 576654 788999999999999999999999999875431 24467765
Q ss_pred CCCCCccCC
Q 001935 475 QGGDPYLFP 483 (994)
Q Consensus 475 ~~~~~~~~p 483 (994)
.+.....+|
T Consensus 252 nVssvlfhp 260 (1202)
T KOG0292|consen 252 NVSSVLFHP 260 (1202)
T ss_pred CcceEEecC
Confidence 544433333
No 66
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.55 E-value=4.2e-13 Score=144.92 Aligned_cols=242 Identities=16% Similarity=0.194 Sum_probs=173.6
Q ss_pred CCCcEEEEEEeeccC------CCC--------CC-CeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCC
Q 001935 55 LKDQVTWAGFDRLEY------GPS--------VF-KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVK 119 (994)
Q Consensus 55 ~kd~V~wa~Fd~le~------~~~--------~~-~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~ 119 (994)
++.-++|--|+.||. |-+ .+ ..+|.+|.+..+++||++ +|++..-+..|..-|+.+. |.-
T Consensus 68 Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~-tG~~~rk~k~h~~~vNs~~--p~r-- 142 (338)
T KOG0265|consen 68 DRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE-TGKRIRKHKGHTSFVNSLD--PSR-- 142 (338)
T ss_pred cceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc-cceeeehhccccceeeecC--ccc--
Confidence 455577876765443 211 23 456667777789999995 5777777777777777765 321
Q ss_pred CCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEE
Q 001935 120 DDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVR 199 (994)
Q Consensus 120 s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~ 199 (994)
|.+.+|+++. -++++||||+++.+++++++-+-++.+|.
T Consensus 143 ----------rg~~lv~Sgs-------------------------------dD~t~kl~D~R~k~~~~t~~~kyqltAv~ 181 (338)
T KOG0265|consen 143 ----------RGPQLVCSGS-------------------------------DDGTLKLWDIRKKEAIKTFENKYQLTAVG 181 (338)
T ss_pred ----------cCCeEEEecC-------------------------------CCceEEEEeecccchhhccccceeEEEEE
Confidence 1233444431 15899999999999999998888999999
Q ss_pred ecC---CeEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCc
Q 001935 200 CSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQN 276 (994)
Q Consensus 200 ~S~---~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qs 276 (994)
|+. +.+..+.++.|++||++..+.++++.+|..+ ...++++
T Consensus 182 f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt-------------It~lsls----------------------- 225 (338)
T KOG0265|consen 182 FKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT-------------ITGLSLS----------------------- 225 (338)
T ss_pred ecccccceeeccccCceeeeccccCcceEEeecccCc-------------eeeEEec-----------------------
Confidence 976 5666677889999999999999998887553 0112221
Q ss_pred CCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEEC
Q 001935 277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 356 (994)
Q Consensus 277 ltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl 356 (994)
+.+..+ .+-.-|.+|++||+
T Consensus 226 -----------~~gs~l-------------------------------------------------lsnsMd~tvrvwd~ 245 (338)
T KOG0265|consen 226 -----------RYGSFL-------------------------------------------------LSNSMDNTVRVWDV 245 (338)
T ss_pred -----------cCCCcc-------------------------------------------------ccccccceEEEEEe
Confidence 010000 01235779999998
Q ss_pred CC----CcEEEEeccCCC----CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 001935 357 VT----RAIISQFKAHTS----PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (994)
Q Consensus 357 ~s----~~~i~~~~aHts----pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG 428 (994)
.. .+++..|.+|.. ....++++|+++.+..+|. ++.+.|||... ...+|+|- |
T Consensus 246 rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~-dr~vyvwd~~~-----------------r~~lyklp-G 306 (338)
T KOG0265|consen 246 RPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSA-DRFVYVWDTTS-----------------RRILYKLP-G 306 (338)
T ss_pred cccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccc-cceEEEeeccc-----------------ccEEEEcC-C
Confidence 74 346888888754 4567899999999998888 67799999742 15889884 6
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEE
Q 001935 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVF 458 (994)
Q Consensus 429 ~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw 458 (994)
+ ...|.+++|.|.-..|.+++.|.||.+=
T Consensus 307 h-~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 307 H-YGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred c-ceeEEEeeecCCCcEEEEeccCceeEee
Confidence 4 4679999999999999999999999763
No 67
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.8e-13 Score=152.49 Aligned_cols=281 Identities=16% Similarity=0.225 Sum_probs=179.5
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEee---eeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELV---SKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 55 ~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~ell---s~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
....|.-+.|.. ....+|+.|+++.++||.++ |+....+ -...-|+.++.|.|++... --++..|+
T Consensus 212 s~~~I~sv~FHp------~~plllvaG~d~~lrifqvD--Gk~N~~lqS~~l~~fPi~~a~f~p~G~~~---i~~s~rrk 280 (514)
T KOG2055|consen 212 SHGGITSVQFHP------TAPLLLVAGLDGTLRIFQVD--GKVNPKLQSIHLEKFPIQKAEFAPNGHSV---IFTSGRRK 280 (514)
T ss_pred CcCCceEEEecC------CCceEEEecCCCcEEEEEec--CccChhheeeeeccCccceeeecCCCceE---EEecccce
Confidence 345677777864 13456666677779999994 4444333 2346899999999987410 00233344
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCC---cC-CCCCCCCC---CCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGM---MD-SQSGNCVN---SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-- 202 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~---~d-~~~~~~~~---sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~-- 202 (994)
++-+.--...+- +....+.++...+ ++ .+.++.+. --+.|.|...+|++.+.+++..+.|.++.|+.
T Consensus 281 y~ysyDle~ak~----~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSds 356 (514)
T KOG2055|consen 281 YLYSYDLETAKV----TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS 356 (514)
T ss_pred EEEEeecccccc----ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCC
Confidence 544432211110 0001111110000 00 00011111 12789999999999999999999999999976
Q ss_pred -CeEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEE--cccEEEEccCCeeeccCCccCCCcCCC
Q 001935 203 -RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAV--GPRWLAYASNTLLLSNSGRLSPQNLTP 279 (994)
Q Consensus 203 -~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAl--gpRwLAyas~~~~iwd~G~~s~qsltp 279 (994)
.+++++..++|++||+.+..+++....... +. ...+++ .++||
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~----------v~--gts~~~S~ng~yl---------------------- 402 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSCLHRFVDDGS----------VH--GTSLCISLNGSYL---------------------- 402 (514)
T ss_pred cEEEEEcCCceEEEEecCCcceEEEEeecCc----------cc--eeeeeecCCCceE----------------------
Confidence 477788889999999999988777654211 00 011111 11222
Q ss_pred CCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCC-
Q 001935 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT- 358 (994)
Q Consensus 280 ~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s- 358 (994)
|.|+..|.|.|||..+
T Consensus 403 ---------------------------------------------------------------A~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 403 ---------------------------------------------------------------ATGSDSGIVNIYDGNSC 419 (514)
T ss_pred ---------------------------------------------------------------EeccCcceEEEeccchh
Confidence 3456677888888653
Q ss_pred -----CcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-CCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 001935 359 -----RAIISQFKAHTSPISALCFDPSGTLLVTASVY-GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 432 (994)
Q Consensus 359 -----~~~i~~~~aHtspIsaLaFSPdGtlLATAS~d-Gt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a 432 (994)
.+.+..+.--+..|+.|+|+||+.+||.||.. ...+|+-.+ |. .+..++|+.... +-.
T Consensus 420 ~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv-PS------~TVFsNfP~~n~---------~vg 483 (514)
T KOG2055|consen 420 FASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV-PS------CTVFSNFPTSNT---------KVG 483 (514)
T ss_pred hccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec-cc------eeeeccCCCCCC---------ccc
Confidence 46777777778899999999999999999963 234788887 43 334455654332 223
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 433 ~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
.|+|++|||.|.+||+|...|.+|||+|..|
T Consensus 484 ~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 484 HVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred ceEEEEecCCCceEEeecCCCceeeEeeccC
Confidence 5899999999999999999999999999764
No 68
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.54 E-value=7.5e-13 Score=160.77 Aligned_cols=252 Identities=17% Similarity=0.207 Sum_probs=174.9
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC------CCc-----------ceEeeeeccCCEEEEEEe
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED------ASN-----------FNELVSKRDGPVSFLQMQ 114 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~------~g~-----------v~ells~hdGpV~~v~~l 114 (994)
.+|...|..++|- +++++|+.|.++. ++||.-.. -|. +..++.+|++-|..+.++
T Consensus 66 ~~h~~sv~CVR~S-------~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 66 DDHDGSVNCVRFS-------PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred ccccCceeEEEEC-------CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 4566778888885 3789999999998 69999862 111 456677899999999999
Q ss_pred cCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-C
Q 001935 115 PFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-S 193 (994)
Q Consensus 115 P~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S 193 (994)
|+. -+|+.|+ .+++|.|||.++.+.+++++-| +
T Consensus 139 p~~-------------~~lvS~s---------------------------------~DnsViiwn~~tF~~~~vl~~H~s 172 (942)
T KOG0973|consen 139 PDD-------------SLLVSVS---------------------------------LDNSVIIWNAKTFELLKVLRGHQS 172 (942)
T ss_pred CCc-------------cEEEEec---------------------------------ccceEEEEccccceeeeeeecccc
Confidence 875 2666543 2579999999999999999754 7
Q ss_pred cEEEEEecC--CeEEEEeC-CeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCC
Q 001935 194 SVCMVRCSP--RIVAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSG 270 (994)
Q Consensus 194 ~V~sV~~S~--~iLAVgl~-~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G 270 (994)
.|..|.|+| +++|+-.+ ..|++|++.+....+++..+-.. +-..+.++
T Consensus 173 ~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~----------------~~~~T~f~------------- 223 (942)
T KOG0973|consen 173 LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE----------------SPLTTFFL------------- 223 (942)
T ss_pred cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh----------------CCCcceee-------------
Confidence 999999999 89998554 57999998887766666542110 00000000
Q ss_pred ccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCe
Q 001935 271 RLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI 350 (994)
Q Consensus 271 ~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~ 350 (994)
| ++=||++..+++ +.+.-+..-.
T Consensus 224 R------------lSWSPDG~~las---------------------------------------------~nA~n~~~~~ 246 (942)
T KOG0973|consen 224 R------------LSWSPDGHHLAS---------------------------------------------PNAVNGGKST 246 (942)
T ss_pred e------------cccCCCcCeecc---------------------------------------------hhhccCCcce
Confidence 0 111344333322 1111112235
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCC--------C-----C----EEEEEEcCCCeEEEEeCCCCcccCCCCCCcc
Q 001935 351 VVVKDFVTRAIISQFKAHTSPISALCFDPS--------G-----T----LLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (994)
Q Consensus 351 V~VwDl~s~~~i~~~~aHtspIsaLaFSPd--------G-----t----lLATAS~dGt~IrVwdi~p~~~~~~sG~~~~ 413 (994)
+.|.+-.+-+.-..|.+|..|+.+++|+|. | + .+|+||.|+ .|-||.....
T Consensus 247 ~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr-SlSVW~T~~~----------- 314 (942)
T KOG0973|consen 247 IAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR-SLSVWNTALP----------- 314 (942)
T ss_pred eEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc-cEEEEecCCC-----------
Confidence 667777666777889999999999999983 2 2 577888855 5999997421
Q ss_pred ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 414 ~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
+.++..+- ..+..|.|++|||||.-|.++|.||||.++.++.
T Consensus 315 ------RPl~vi~~-lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 315 ------RPLFVIHN-LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred ------Cchhhhhh-hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 33333221 2345799999999999999999999999998864
No 69
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.54 E-value=1.1e-13 Score=160.38 Aligned_cols=240 Identities=18% Similarity=0.162 Sum_probs=163.4
Q ss_pred CCCeEEEEEecCc-EEEEEccCCCc-----ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCC
Q 001935 73 VFKQVLLLGYQNG-FQVLDVEDASN-----FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAP 146 (994)
Q Consensus 73 ~~~~vL~lGy~~G-~qVWDv~~~g~-----v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~ 146 (994)
+.++.|.+|..+| +++|++....+ ....++.|..+|+.+.+--++ ..|..+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~-------------~tlIS~---------- 91 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG-------------KTLISA---------- 91 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC-------------CceEEe----------
Confidence 3456888888887 79999965433 244566777888877654222 122322
Q ss_pred CCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCC--eEEEEEe-CCCcEEEEEe---cCCeEEE-EeCCeEEEEECC
Q 001935 147 GQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--CYEHVLR-FRSSVCMVRC---SPRIVAV-GLATQIYCFDAL 219 (994)
Q Consensus 147 ~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktg--e~V~tL~-f~S~V~sV~~---S~~iLAV-gl~~~I~IwDa~ 219 (994)
+++++|++|+...+ -|..+|+ +...|.+++. +..++|. |++.+|.+||+.
T Consensus 92 -----------------------SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin 148 (735)
T KOG0308|consen 92 -----------------------SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN 148 (735)
T ss_pred -----------------------cCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence 23689999999877 5777775 4568887776 2234444 678899999998
Q ss_pred CCce--eEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEe
Q 001935 220 TLEN--KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY 297 (994)
Q Consensus 220 Tle~--l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~ 297 (994)
++-. +.+...-+. +.+..|++ . +
T Consensus 149 ~~~~~l~~s~n~~t~---------------~sl~sG~k--------------------------~--------s------ 173 (735)
T KOG0308|consen 149 TGTATLVASFNNVTV---------------NSLGSGPK--------------------------D--------S------ 173 (735)
T ss_pred Ccchhhhhhcccccc---------------ccCCCCCc--------------------------c--------c------
Confidence 7632 211111000 00000110 0 0
Q ss_pred ehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE
Q 001935 298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF 377 (994)
Q Consensus 298 A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaF 377 (994)
.|. +..|+.+ ..+++|+..+.+++||..+++.+..|++|+..|.+|-.
T Consensus 174 -----------------iYS-----------LA~N~t~----t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~ 221 (735)
T KOG0308|consen 174 -----------------IYS-----------LAMNQTG----TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLV 221 (735)
T ss_pred -----------------eee-----------eecCCcc----eEEEecCcccceEEeccccccceeeeeccccceEEEEE
Confidence 010 0000100 12456788999999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 001935 378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (994)
Q Consensus 378 SPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhI 457 (994)
++||+.+.|||.||+ |||||+.. .+++.++.- |...||++.-+|+=+.+.+|+.||.|..
T Consensus 222 ~dDGt~~ls~sSDgt-IrlWdLgq-----------------QrCl~T~~v--H~e~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 222 NDDGTRLLSASSDGT-IRLWDLGQ-----------------QRCLATYIV--HKEGVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred cCCCCeEeecCCCce-EEeeeccc-----------------cceeeeEEe--ccCceEEEeeCCCcceEEecCCCCcEEe
Confidence 999999999999887 99999942 157777643 3345999999999999999999999988
Q ss_pred EecCCCCC
Q 001935 458 FVLSPFGG 465 (994)
Q Consensus 458 w~I~~~gg 465 (994)
=+|..+..
T Consensus 282 Tdl~n~~~ 289 (735)
T KOG0308|consen 282 TDLRNPAK 289 (735)
T ss_pred cccCCchh
Confidence 88877533
No 70
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=8.4e-13 Score=143.04 Aligned_cols=229 Identities=18% Similarity=0.254 Sum_probs=154.4
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEE
Q 001935 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (994)
Q Consensus 54 ~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLL 133 (994)
.+...|+-..|.- ..+++..|.++.++++|++ ++ -...+..|+++|++|...+.- ..+
T Consensus 52 ~~~~plL~c~F~d-------~~~~~~G~~dg~vr~~Dln-~~-~~~~igth~~~i~ci~~~~~~-------------~~v 109 (323)
T KOG1036|consen 52 KHGAPLLDCAFAD-------ESTIVTGGLDGQVRRYDLN-TG-NEDQIGTHDEGIRCIEYSYEV-------------GCV 109 (323)
T ss_pred ecCCceeeeeccC-------CceEEEeccCceEEEEEec-CC-cceeeccCCCceEEEEeeccC-------------CeE
Confidence 3566677777752 3467777777779999995 34 356788899999999988421 122
Q ss_pred EEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEeC-Ce
Q 001935 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLA-TQ 212 (994)
Q Consensus 134 AvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~~iLAVgl~-~~ 212 (994)
+ + |+|| ++|+|||.+....+.++.-...|+++..+.++|+||.. .+
T Consensus 110 I--s---------------------gsWD----------~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~ 156 (323)
T KOG1036|consen 110 I--S---------------------GSWD----------KTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRK 156 (323)
T ss_pred E--E---------------------cccC----------ccEEEEeccccccccccccCceEEEEeccCCEEEEeecCce
Confidence 2 2 4564 78999999987777777667799999999999999654 57
Q ss_pred EEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCc
Q 001935 213 IYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSS 292 (994)
Q Consensus 213 I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gs 292 (994)
+.+||+++++..+...+.+. -.-.|.++.-++.- |.
T Consensus 157 v~iyDLRn~~~~~q~reS~l------------------kyqtR~v~~~pn~e--------------------------Gy 192 (323)
T KOG1036|consen 157 VLIYDLRNLDEPFQRRESSL------------------KYQTRCVALVPNGE--------------------------GY 192 (323)
T ss_pred EEEEEcccccchhhhccccc------------------eeEEEEEEEecCCC--------------------------ce
Confidence 99999999887665443322 12234444332210 00
Q ss_pred eEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC----cEEEEeccC
Q 001935 293 LVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR----AIISQFKAH 368 (994)
Q Consensus 293 LVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~----~~i~~~~aH 368 (994)
+.++.+|.|.|=++... +..-.|+.|
T Consensus 193 --------------------------------------------------~~sSieGRVavE~~d~s~~~~skkyaFkCH 222 (323)
T KOG1036|consen 193 --------------------------------------------------VVSSIEGRVAVEYFDDSEEAQSKKYAFKCH 222 (323)
T ss_pred --------------------------------------------------EEEeecceEEEEccCCchHHhhhceeEEee
Confidence 01122333333333322 122334444
Q ss_pred C---------CCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 001935 369 T---------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (994)
Q Consensus 369 t---------spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaF 439 (994)
. -||++|+|+|--..||||+.||- |.+||+.+- +.|++|.+= ...|-+++|
T Consensus 223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~-V~~Wd~~~r-----------------Krl~q~~~~--~~SI~slsf 282 (323)
T KOG1036|consen 223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI-VNIWDLFNR-----------------KRLKQLAKY--ETSISSLSF 282 (323)
T ss_pred ecccCCceEEEEeceeEeccccceEEecCCCce-EEEccCcch-----------------hhhhhccCC--CCceEEEEe
Confidence 2 29999999999889999999876 899998641 466777542 235999999
Q ss_pred ccCCCEEEEEeC
Q 001935 440 SHYSQWIAIVSS 451 (994)
Q Consensus 440 SpDg~~LAsgS~ 451 (994)
+.||..||++++
T Consensus 283 s~dG~~LAia~s 294 (323)
T KOG1036|consen 283 SMDGSLLAIASS 294 (323)
T ss_pred ccCCCeEEEEec
Confidence 999999999974
No 71
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=3.8e-13 Score=149.65 Aligned_cols=277 Identities=16% Similarity=0.174 Sum_probs=176.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc--ceEeeeeccCCEEEEEEecCCCCCCCCCCccc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRK 128 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~--v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~ 128 (994)
.++|+|.|=+..|- +.++.||++..+. .-||++..... +..++.+|..+|..+.++|+.
T Consensus 220 l~~htdEVWfl~FS-------~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd----------- 281 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFS-------HNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD----------- 281 (519)
T ss_pred HhhCCCcEEEEEEc-------CCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-----------
Confidence 46799999988885 3688999999875 78999865544 346677889999999999975
Q ss_pred cCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CcEEEEEecC--Ce
Q 001935 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP--RI 204 (994)
Q Consensus 129 srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~--S~V~sV~~S~--~i 204 (994)
| +|+.|.. +..+++||..+|++.+.++.. -.+.+.++.| ..
T Consensus 282 -r-yLlaCg~---------------------------------~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~ 326 (519)
T KOG0293|consen 282 -R-YLLACGF---------------------------------DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR 326 (519)
T ss_pred -C-eEEecCc---------------------------------hHheeeccCCcchhhhhcccCcCCCcceeEEccCCce
Confidence 2 3443321 235999999999999888654 3667777777 35
Q ss_pred EEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEE-EEccCC-eeeccCCccCCCcCCC
Q 001935 205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWL-AYASNT-LLLSNSGRLSPQNLTP 279 (994)
Q Consensus 205 LAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwL-Ayas~~-~~iwd~G~~s~qsltp 279 (994)
+++|. +.+|+-||+.... +.....-..| . ...+|+.+ +|+ +...+. ..+.+
T Consensus 327 ~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~--------~----v~dlait~Dgk~vl~v~~d~~i~l~~----------- 382 (519)
T KOG0293|consen 327 FVTGSPDRTIIMWDLDGNI-LGNWEGVRDP--------K----VHDLAITYDGKYVLLVTVDKKIRLYN----------- 382 (519)
T ss_pred eEecCCCCcEEEecCCcch-hhcccccccc--------e----eEEEEEcCCCcEEEEEecccceeeec-----------
Confidence 55554 5679999976422 2222111001 0 12244433 232 221111 11111
Q ss_pred CCCCCCcCCCCCceEEEeehhhhhhhhcccc---eeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEEC
Q 001935 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLS---KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 356 (994)
Q Consensus 280 ~~~S~stSp~~gsLVa~~A~dssk~la~Gi~---ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl 356 (994)
++.- +-.|++ ..++ .++.+.++++.- ..-.+..+++||+
T Consensus 383 -------------------~e~~--~dr~lise~~~it-------------s~~iS~d~k~~L----vnL~~qei~LWDl 424 (519)
T KOG0293|consen 383 -------------------REAR--VDRGLISEEQPIT-------------SFSISKDGKLAL----VNLQDQEIHLWDL 424 (519)
T ss_pred -------------------hhhh--hhhccccccCcee-------------EEEEcCCCcEEE----EEcccCeeEEeec
Confidence 0000 000110 0001 111111222111 1235778999999
Q ss_pred CCCcEEEEeccCCC--CeEEEEEC-CCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccccc
Q 001935 357 VTRAIISQFKAHTS--PISALCFD-PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT 433 (994)
Q Consensus 357 ~s~~~i~~~~aHts--pIsaLaFS-PdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~ 433 (994)
.....+..+.+|+. -|-.-||- .+.+++|++|+|+. |+||+... | ..+-+| -|+. ..
T Consensus 425 ~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~s-------g----------kll~~L-sGHs-~~ 484 (519)
T KOG0293|consen 425 EENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRIS-------G----------KLLAVL-SGHS-KT 484 (519)
T ss_pred chhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccC-------C----------ceeEee-cCCc-ce
Confidence 99999999999975 35555775 45589999999665 99999753 4 467777 4654 46
Q ss_pred EEEEEEccCC-CEEEEEeCCCeEEEEecCCC
Q 001935 434 IQDICFSHYS-QWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 434 I~sIaFSpDg-~~LAsgS~dGTVhIw~I~~~ 463 (994)
|.+++|+|.. ..+|++|+||||+||.+.+.
T Consensus 485 vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 485 VNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred eeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999999954 78999999999999998764
No 72
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=5.5e-13 Score=140.17 Aligned_cols=209 Identities=15% Similarity=0.112 Sum_probs=152.3
Q ss_pred eEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEE
Q 001935 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (994)
Q Consensus 98 ~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrL 177 (994)
..++..++|+|+.+++--++ .+.+. +| ++++||+
T Consensus 10 ~~~l~~~qgaV~avryN~dG-------------nY~lt-cG--------------------------------sdrtvrL 43 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDG-------------NYCLT-CG--------------------------------SDRTVRL 43 (307)
T ss_pred ceeecccccceEEEEEccCC-------------CEEEE-cC--------------------------------CCceEEe
Confidence 35678899999999987544 35443 22 2589999
Q ss_pred EECCCCeEEEEEeCCC-cEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEc
Q 001935 178 YSFQSHCYEHVLRFRS-SVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG 253 (994)
Q Consensus 178 WDlktge~V~tL~f~S-~V~sV~~S~---~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlg 253 (994)
|+...|.+++++.-++ .|++++.+. ++...|.+..|++||+.|++..+.+.+|... +| .
T Consensus 44 WNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq---------VN----t---- 106 (307)
T KOG0316|consen 44 WNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQ---------VN----T---- 106 (307)
T ss_pred ecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccce---------ee----E----
Confidence 9999999999998775 899887754 4555677778999999999999888887441 11 1
Q ss_pred ccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCC
Q 001935 254 PRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS 333 (994)
Q Consensus 254 pRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~ 333 (994)
++|... .+
T Consensus 107 ---V~fNee----------------------------sS----------------------------------------- 114 (307)
T KOG0316|consen 107 ---VRFNEE----------------------------SS----------------------------------------- 114 (307)
T ss_pred ---EEecCc----------------------------ce-----------------------------------------
Confidence 222221 01
Q ss_pred ccccccccccccCCCCeEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCC
Q 001935 334 VWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411 (994)
Q Consensus 334 ~~k~g~~~~as~s~dG~V~VwDl~s~--~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~ 411 (994)
.+++++.|..|++||..+. +++..|..-+..|+++.. .+..++++|.||+ +|.||+.. |+
T Consensus 115 -------Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~DGt-vRtydiR~-------G~- 176 (307)
T KOG0316|consen 115 -------VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVDGT-VRTYDIRK-------GT- 176 (307)
T ss_pred -------EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccCCc-EEEEEeec-------ce-
Confidence 1235678999999999875 577788777888888776 5678999999888 89999964 31
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcccccc
Q 001935 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (994)
Q Consensus 412 ~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H 472 (994)
..-.+ - ..+|++++||+|++.+.+++.++|+|+-+-++.+--.....|
T Consensus 177 ---------l~sDy-~---g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 177 ---------LSSDY-F---GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred ---------eehhh-c---CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence 11111 1 247999999999999999999999999886554333333444
No 73
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=3.8e-12 Score=136.13 Aligned_cols=207 Identities=20% Similarity=0.249 Sum_probs=150.7
Q ss_pred ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEE
Q 001935 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (994)
Q Consensus 97 v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVr 176 (994)
....+++|-+.|..+++-|.- +.+||.+++ +++||
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~------------g~ilAscg~---------------------------------Dk~vr 40 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGK------------GVILASCGT---------------------------------DKAVR 40 (312)
T ss_pred eEEeecCCCCcEEEEEeccCC------------ceEEEeecC---------------------------------CceEE
Confidence 346678888899999988641 236775321 47999
Q ss_pred EEECCC---CeEEEEEe--CCCcEEEEEecC--CeEEEE-eCCeEEEEECC--CCceeEEEeecCCccccCCCccccccC
Q 001935 177 FYSFQS---HCYEHVLR--FRSSVCMVRCSP--RIVAVG-LATQIYCFDAL--TLENKFSVLTYPVPQLAGQGAVGINVG 246 (994)
Q Consensus 177 LWDlkt---ge~V~tL~--f~S~V~sV~~S~--~iLAVg-l~~~I~IwDa~--Tle~l~tL~t~p~p~~~~~g~~~vnv~ 246 (994)
+|++.. -.+..+|. +.-.|++|+++| ++||++ .+.++.||.-. +++++.+|.+|.+.
T Consensus 41 iw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE------------- 107 (312)
T KOG0645|consen 41 IWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE------------- 107 (312)
T ss_pred EEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc-------------
Confidence 999984 44555663 345899999988 788875 46689999644 46778888877662
Q ss_pred ccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCC
Q 001935 247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (994)
Q Consensus 247 ~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~ 326 (994)
.+.+|++.+ +..
T Consensus 108 -------VK~Vaws~s---------------------------G~~---------------------------------- 119 (312)
T KOG0645|consen 108 -------VKCVAWSAS---------------------------GNY---------------------------------- 119 (312)
T ss_pred -------eeEEEEcCC---------------------------CCE----------------------------------
Confidence 112222221 111
Q ss_pred CCccCCCccccccccccccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCc
Q 001935 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 403 (994)
Q Consensus 327 s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~---~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~ 403 (994)
+|+++.|..|=||.+... .+++.|..|+..|--+.|+|.-.+|+|+|-|. +|++|+-.+.
T Consensus 120 ---------------LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn-TIk~~~~~~d- 182 (312)
T KOG0645|consen 120 ---------------LATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN-TIKVYRDEDD- 182 (312)
T ss_pred ---------------EEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC-eEEEEeecCC-
Confidence 124456677778877643 58899999999999999999999999999955 5999996531
Q ss_pred ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 404 ~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
.+ ..++.+|. |++ ..||+++|.+.|..|+++++|+|++||.+-
T Consensus 183 ---------dd----W~c~~tl~-g~~-~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 183 ---------DD----WECVQTLD-GHE-NTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ---------CC----eeEEEEec-Ccc-ceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 12 35777774 544 379999999999999999999999999954
No 74
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.51 E-value=3.4e-12 Score=151.43 Aligned_cols=96 Identities=23% Similarity=0.353 Sum_probs=81.5
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
+.+..|-.|+|+|..+.+++..|.+|+..|++++|||||++|++|+-|++ ||+||+.. | .++
T Consensus 550 a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~t-Ir~wDlpt-------~----------~lI 611 (910)
T KOG1539|consen 550 AIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDST-IRTWDLPT-------G----------TLI 611 (910)
T ss_pred hhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCc-EEEEeccC-------c----------cee
Confidence 34557788999999999999999999999999999999999999999776 99999943 3 244
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCC-CeEEEEe
Q 001935 423 YKLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFV 459 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~LAsgS~d-GTVhIw~ 459 (994)
--+. ...+..+++|||.|.+||++..| .-|.+|.
T Consensus 612 D~~~---vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 612 DGLL---VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eeEe---cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 4442 24578999999999999999999 4589997
No 75
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.51 E-value=7.6e-12 Score=148.49 Aligned_cols=120 Identities=18% Similarity=0.247 Sum_probs=86.6
Q ss_pred cCCCCeEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCccc--CCCCCC--------
Q 001935 345 MDNAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR--SGSGNH-------- 411 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~---~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~--~~sG~~-------- 411 (994)
|...|.|.+|++++|-....| .+|..+|..|+.+--+++++||+.+|. +..|+.....-. -..|..
T Consensus 466 G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~hr 544 (910)
T KOG1539|consen 466 GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYHR 544 (910)
T ss_pred eccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce-EEEEecCCcceeeeeccCCCcceeeeee
Confidence 345799999999999888888 699999999999999999999999886 899997542100 000100
Q ss_pred --------ccccC------CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCc
Q 001935 412 --------KYDWN------SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 467 (994)
Q Consensus 412 --------~~~~~------~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~ 467 (994)
-.+.. .+++-+.+| +|+ ...|++++|||||+||++++.|+||++|+|......-
T Consensus 545 ~s~l~a~~~ddf~I~vvD~~t~kvvR~f-~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 545 VSDLLAIALDDFSIRVVDVVTRKVVREF-WGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID 612 (910)
T ss_pred hhhhhhhhcCceeEEEEEchhhhhhHHh-hcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee
Confidence 00000 000001112 464 4679999999999999999999999999998765443
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.50 E-value=1.2e-13 Score=153.63 Aligned_cols=230 Identities=12% Similarity=0.088 Sum_probs=160.1
Q ss_pred EEEEEe-cCcEEEEEccCCCc--ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCc
Q 001935 77 VLLLGY-QNGFQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (994)
Q Consensus 77 vL~lGy-~~G~qVWDv~~~g~--v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~ 153 (994)
.|+.|. +.-|++|++. .+. +..+|.+..|++..+.+-++. +..||. +
T Consensus 189 tlatgg~Dr~Ik~W~v~-~~k~~~~~tLaGs~g~it~~d~d~~~------------~~~iAa-s---------------- 238 (459)
T KOG0288|consen 189 TLATGGSDRIIKLWNVL-GEKSELISTLAGSLGNITSIDFDSDN------------KHVIAA-S---------------- 238 (459)
T ss_pred hhhhcchhhhhhhhhcc-cchhhhhhhhhccCCCcceeeecCCC------------ceEEee-c----------------
Confidence 455554 4559999994 333 566777788899999987543 224442 1
Q ss_pred cccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCC--eEEEEeC-CeEEEEECCCCceeEEEee
Q 001935 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR--IVAVGLA-TQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 154 ~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~~--iLAVgl~-~~I~IwDa~Tle~l~tL~t 229 (994)
.++.+++|++.+.+..++|..| ..|.++.|... .++.+.. -+|++||+....+..++.-
T Consensus 239 -----------------~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~ 301 (459)
T KOG0288|consen 239 -----------------NDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP 301 (459)
T ss_pred -----------------CCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc
Confidence 2467999999999999999766 58999998763 2444443 4799999887555433220
Q ss_pred cCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhccc
Q 001935 230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (994)
Q Consensus 230 ~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi 309 (994)
-.. .+-+.++
T Consensus 302 ~S~--------------cnDI~~~-------------------------------------------------------- 311 (459)
T KOG0288|consen 302 GSQ--------------CNDIVCS-------------------------------------------------------- 311 (459)
T ss_pred ccc--------------ccceEec--------------------------------------------------------
Confidence 000 0000000
Q ss_pred ceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 001935 310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 389 (994)
Q Consensus 310 ~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~ 389 (994)
...+.++..|++|+.||+.+...+....+|. .|++|..+++|..|.+.+.
T Consensus 312 -----------------------------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR 361 (459)
T KOG0288|consen 312 -----------------------------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR 361 (459)
T ss_pred -----------------------------ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC
Confidence 0012345689999999999999999999986 9999999999999999988
Q ss_pred CCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccc
Q 001935 390 YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 469 (994)
Q Consensus 390 dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~ 469 (994)
|++ +.|+|+... + .++.|.-..-.+......+.||||+.|+|+||.||.|+||.+...+.+..+
T Consensus 362 Ddt-l~viDlRt~------e---------I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 362 DDT-LKVIDLRTK------E---------IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred CCc-eeeeecccc------c---------EEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEe
Confidence 665 999998642 1 133343221112235788999999999999999999999999887665443
No 77
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.48 E-value=2.7e-12 Score=145.90 Aligned_cols=111 Identities=16% Similarity=0.227 Sum_probs=84.8
Q ss_pred ccccCCCCeEEEEECCCCc-EEEEec-----cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCcccc
Q 001935 342 GADMDNAGIVVVKDFVTRA-IISQFK-----AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~~-~i~~~~-----aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~ 415 (994)
+.++++||+++|||+.+-+ .+..|+ +-.-+++.++|+|||+++|+|-.+|. |.+|+...-
T Consensus 284 FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~------------- 349 (641)
T KOG0772|consen 284 FLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSR------------- 349 (641)
T ss_pred eEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCc-------------
Confidence 4578899999999998643 233332 23458899999999999999999876 999997311
Q ss_pred CCcceEEEEEeccccc-ccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcc
Q 001935 416 NSSHVHLYKLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 468 (994)
Q Consensus 416 ~~s~~~l~~L~RG~t~-a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~ 468 (994)
..+..+..+..|.. ..|.||+||+||++|++=+.|+|++||+|..+..+..
T Consensus 350 --~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 350 --TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLN 401 (641)
T ss_pred --ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchh
Confidence 11334445444443 2799999999999999999999999999998876543
No 78
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.45 E-value=7e-12 Score=141.21 Aligned_cols=111 Identities=19% Similarity=0.356 Sum_probs=84.4
Q ss_pred ccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCCCCcccCCCCCCcc--c-cC
Q 001935 342 GADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKY--D-WN 416 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~-~~i~~~~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~--~-~~ 416 (994)
+|+++.|++|.+||+.+. +.+.+|.+|...|..|.|||.- +.|||++.|++ ++|||+..- |.... + -.
T Consensus 288 lAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~i------g~eq~~eda~d 360 (422)
T KOG0264|consen 288 LATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRI------GEEQSPEDAED 360 (422)
T ss_pred EEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEecccc------ccccChhhhcc
Confidence 456788999999999985 4789999999999999999976 68999998776 899999642 21100 0 00
Q ss_pred CcceEEEEEecccccccEEEEEEccCCCE-EEEEeCCCeEEEEecC
Q 001935 417 SSHVHLYKLHRGITSATIQDICFSHYSQW-IAIVSSKGTCHVFVLS 461 (994)
Q Consensus 417 ~s~~~l~~L~RG~t~a~I~sIaFSpDg~~-LAsgS~dGTVhIw~I~ 461 (994)
.....|+ .++||+ +.|.+++|.|.--| ||++++|+.+|||+..
T Consensus 361 gppEllF-~HgGH~-~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLF-IHGGHT-AKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCcceeE-EecCcc-cccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 1113344 457765 77999999998876 4678999999999976
No 79
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.45 E-value=1.3e-11 Score=136.64 Aligned_cols=102 Identities=15% Similarity=0.220 Sum_probs=84.9
Q ss_pred ccccCCCCeEEEEECCCCc---EEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCC
Q 001935 342 GADMDNAGIVVVKDFVTRA---IISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~~---~i~~~~aHtspIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~ 417 (994)
++.++.|..+++||-.++. +..+|.+|++-|+++.++|... +|+++|.|++ +++||+...
T Consensus 315 l~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-~klWDvRS~--------------- 378 (423)
T KOG0313|consen 315 LASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-VKLWDVRST--------------- 378 (423)
T ss_pred eeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe-EEEEEeccC---------------
Confidence 4678899999999998764 5688999999999999999886 5778888665 999999631
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 418 s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
...||.+.+ ++.+|.++.|. ++..|++|+.|.+++||.-.+.
T Consensus 379 -k~plydI~~--h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~~ 420 (423)
T KOG0313|consen 379 -KAPLYDIAG--HNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSPI 420 (423)
T ss_pred -CCcceeecc--CCceEEEEecc-CCceEEeccCcceEEEeccccc
Confidence 127899876 46789999998 7889999999999999986543
No 80
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.7e-12 Score=136.28 Aligned_cols=229 Identities=15% Similarity=0.152 Sum_probs=155.0
Q ss_pred EEEEEccCCCcceEeeeec-cCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCC
Q 001935 86 FQVLDVEDASNFNELVSKR-DGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQ 164 (994)
Q Consensus 86 ~qVWDv~~~g~v~ells~h-dGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~ 164 (994)
+-|.+++....+.+..+.. ...+..|++.++- . ..+++++||
T Consensus 40 L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~----------e--~~~~~a~GD------------------------- 82 (311)
T KOG0277|consen 40 LFILEVTDPKGIQECQSYDTEDGLFDVAWSENH----------E--NQVIAASGD------------------------- 82 (311)
T ss_pred EEEEecCCCCCeEEEEeeecccceeEeeecCCC----------c--ceEEEEecC-------------------------
Confidence 5666765455566665543 3468888888643 1 245554443
Q ss_pred CCCCCCCCCEEEEEECC-CCeEEEEEe-CCCcEEEEEecC----CeEEEEeCCeEEEEECCCCceeEEEeecCCccccCC
Q 001935 165 SGNCVNSPTAVRFYSFQ-SHCYEHVLR-FRSSVCMVRCSP----RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQ 238 (994)
Q Consensus 165 ~~~~~~sp~tVrLWDlk-tge~V~tL~-f~S~V~sV~~S~----~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~ 238 (994)
+.+||||+. ....|+.++ +...|++|.++. .+|..+-|++|++||..-.+.+.|..+|..
T Consensus 83 --------GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~------ 148 (311)
T KOG0277|consen 83 --------GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS------ 148 (311)
T ss_pred --------ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCcc------
Confidence 579999974 334677775 446999999987 356667789999999765555555443321
Q ss_pred CccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccc
Q 001935 239 GAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQ 318 (994)
Q Consensus 239 g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~ 318 (994)
+.|.. .+||....
T Consensus 149 ------------------~Iy~a-----------------------~~sp~~~n-------------------------- 161 (311)
T KOG0277|consen 149 ------------------CIYQA-----------------------AFSPHIPN-------------------------- 161 (311)
T ss_pred ------------------EEEEE-----------------------ecCCCCCC--------------------------
Confidence 11111 11111111
Q ss_pred cccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCeEEEE
Q 001935 319 ELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIF 397 (994)
Q Consensus 319 ~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSP-dGtlLATAS~dGt~IrVw 397 (994)
.+++++.||..++||+........|.+|...|.++.|+. +-.+|||++.|+ .||+|
T Consensus 162 ----------------------lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~-~vr~w 218 (311)
T KOG0277|consen 162 ----------------------LFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDN-LVRGW 218 (311)
T ss_pred ----------------------eEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCc-eEEEE
Confidence 124567899999999987655556999999999999986 456899999955 59999
Q ss_pred eCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEecCCC-CCCccccccc
Q 001935 398 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPF-GGDSGFQTLS 473 (994)
Q Consensus 398 di~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg-~~LAsgS~dGTVhIw~I~~~-gg~~~~~~H~ 473 (994)
|+... ..++.+| -|+. -.|..|.|||-. ..||++|-|-|++||+.... +...+...|+
T Consensus 219 Dir~~----------------r~pl~eL-~gh~-~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht 278 (311)
T KOG0277|consen 219 DIRNL----------------RTPLFEL-NGHG-LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT 278 (311)
T ss_pred ehhhc----------------cccceee-cCCc-eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc
Confidence 99642 1478888 4544 459999999964 68899999999999998743 3333444553
No 81
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.43 E-value=1.2e-12 Score=138.58 Aligned_cols=279 Identities=14% Similarity=0.107 Sum_probs=184.0
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcE-EEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGF-QVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~-qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
.+|+-.|.-..|.-+. +++-+|+.+..+|- .+-+ .++|...-++.+|.|.|....+..+.
T Consensus 11 ~ghtrpvvdl~~s~it----p~g~flisa~kd~~pmlr~-g~tgdwigtfeghkgavw~~~l~~na-------------- 71 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPIT----PDGYFLISASKDGKPMLRN-GDTGDWIGTFEGHKGAVWSATLNKNA-------------- 71 (334)
T ss_pred cCCCcceeEEeccCCC----CCceEEEEeccCCCchhcc-CCCCCcEEeeeccCcceeeeecCchh--------------
Confidence 4677778777776432 45678888888884 4444 35788999999999999987765332
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEE-
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG- 208 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVg- 208 (994)
+.|. + .+.+-+-++||.-+|..++++++..-|.+++|+. +.|+.|
T Consensus 72 ~~aa-s-------------------------------aaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg 119 (334)
T KOG0278|consen 72 TRAA-S-------------------------------AAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGG 119 (334)
T ss_pred hhhh-h-------------------------------hcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccc
Confidence 2231 0 1134678999999999999999999999999987 355554
Q ss_pred eCCeEEEEECCCCce-eEEEeecCCccccCCCccccccCccceEEcc-cEEEEcc-CCeeeccC--CccCCCcC--CCCC
Q 001935 209 LATQIYCFDALTLEN-KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYAS-NTLLLSNS--GRLSPQNL--TPSG 281 (994)
Q Consensus 209 l~~~I~IwDa~Tle~-l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp-RwLAyas-~~~~iwd~--G~~s~qsl--tp~~ 281 (994)
.+.-++|||+...+- ...+..|+. ++. .-.+..+- .+|..+. .++++||. |.. .|++ ..++
T Consensus 120 ~ekllrvfdln~p~App~E~~ghtg---------~Ir--~v~wc~eD~~iLSSadd~tVRLWD~rTgt~-v~sL~~~s~V 187 (334)
T KOG0278|consen 120 QEKLLRVFDLNRPKAPPKEISGHTG---------GIR--TVLWCHEDKCILSSADDKTVRLWDHRTGTE-VQSLEFNSPV 187 (334)
T ss_pred hHHHhhhhhccCCCCCchhhcCCCC---------cce--eEEEeccCceEEeeccCCceEEEEeccCcE-EEEEecCCCC
Confidence 455689999876552 222333332 110 11112222 3343332 25788884 221 1111 1111
Q ss_pred CCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 001935 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (994)
Q Consensus 282 ~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~ 361 (994)
.|+-.+ +++.+. +..+.+.|..||..+..+
T Consensus 188 tSlEvs---------------------------------------------~dG~il-----Tia~gssV~Fwdaksf~~ 217 (334)
T KOG0278|consen 188 TSLEVS---------------------------------------------QDGRIL-----TIAYGSSVKFWDAKSFGL 217 (334)
T ss_pred cceeec---------------------------------------------cCCCEE-----EEecCceeEEeccccccc
Confidence 111111 222221 234567899999999998
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 001935 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (994)
Q Consensus 362 i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSp 441 (994)
+..++.. -.|.+-+++|+-..++.+++++. ++.||..+ | ..+-.+-.|+. .+|.|+.|||
T Consensus 218 lKs~k~P-~nV~SASL~P~k~~fVaGged~~-~~kfDy~T-------g----------eEi~~~nkgh~-gpVhcVrFSP 277 (334)
T KOG0278|consen 218 LKSYKMP-CNVESASLHPKKEFFVAGGEDFK-VYKFDYNT-------G----------EEIGSYNKGHF-GPVHCVRFSP 277 (334)
T ss_pred eeeccCc-cccccccccCCCceEEecCcceE-EEEEeccC-------C----------ceeeecccCCC-CceEEEEECC
Confidence 8887765 36889999999999998988765 78888754 3 23333335654 6799999999
Q ss_pred CCCEEEEEeCCCeEEEEecCCCC
Q 001935 442 YSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 442 Dg~~LAsgS~dGTVhIw~I~~~g 464 (994)
||..-|+||.||||+||...+..
T Consensus 278 dGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 278 DGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CCceeeccCCCceEEEEEecCCC
Confidence 99999999999999999988754
No 82
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=7.3e-11 Score=128.16 Aligned_cols=277 Identities=15% Similarity=0.172 Sum_probs=163.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEec-CcEEEEEc-cCCCcceEee--eeccCCEEEEEEecCCCCCCCCCCcc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ-NGFQVLDV-EDASNFNELV--SKRDGPVSFLQMQPFPVKDDGCEGFR 127 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~-~G~qVWDv-~~~g~v~ell--s~hdGpV~~v~~lP~p~~s~~~D~F~ 127 (994)
..+|+|-|.-+.||. -++-+++|.. ..++|||. .+.++..-+- ..|+|.|-.|.+.+.- |
T Consensus 9 ~s~h~DlihdVs~D~-------~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPE--------f- 72 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDF-------YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPE--------F- 72 (361)
T ss_pred ccCCcceeeeeeecc-------cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcc--------c-
Confidence 467999999999996 2344555555 55999995 4445554443 3478888888887421 3
Q ss_pred ccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEEC-----CC-C-e--EEEEEe-CCCcEEE
Q 001935 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-----QS-H-C--YEHVLR-FRSSVCM 197 (994)
Q Consensus 128 ~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDl-----kt-g-e--~V~tL~-f~S~V~s 197 (994)
+..||.|+ .+++|+||.= +. + + ..++|. -++.|++
T Consensus 73 --GqvvA~cS---------------------------------~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~D 117 (361)
T KOG2445|consen 73 --GQVVATCS---------------------------------YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTD 117 (361)
T ss_pred --cceEEEEe---------------------------------cCCceeeeeecccccccccceeEEEEEeecCCcceeE
Confidence 34678765 2578999954 22 1 2 233443 3579999
Q ss_pred EEecCC----eEE-EEeCCeEEEEECCCCceeEEEe-ecCCccccCCCcc--ccccCccceEEcccEEEEccCCeeeccC
Q 001935 198 VRCSPR----IVA-VGLATQIYCFDALTLENKFSVL-TYPVPQLAGQGAV--GINVGYGPMAVGPRWLAYASNTLLLSNS 269 (994)
Q Consensus 198 V~~S~~----iLA-Vgl~~~I~IwDa~Tle~l~tL~-t~p~p~~~~~g~~--~vnv~~gplAlgpRwLAyas~~~~iwd~ 269 (994)
|.|.|+ .|| ++.++.++||++.+.-.+.... .|.. +..+ ..+ ....+++. -|+.
T Consensus 118 V~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei-----~~~~~pp~~--~~~~~~Cv-----------sWn~ 179 (361)
T KOG2445|consen 118 VKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI-----QNVIDPPGK--NKQPCFCV-----------SWNP 179 (361)
T ss_pred EEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh-----hhccCCccc--ccCcceEE-----------eecc
Confidence 999984 344 4556789999877643332111 1111 0000 000 00011111 1221
Q ss_pred CccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCC
Q 001935 270 GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG 349 (994)
Q Consensus 270 G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG 349 (994)
++...+ .+++ |. + .++..-+
T Consensus 180 sr~~~p----------------~iAv------------gs-------------~-------------------e~a~~~~ 199 (361)
T KOG2445|consen 180 SRMHEP----------------LIAV------------GS-------------D-------------------EDAPHLN 199 (361)
T ss_pred ccccCc----------------eEEE------------Ec-------------c-------------------cCCcccc
Confidence 221110 0100 00 0 0122345
Q ss_pred eEEEEECCCCc----EEEEeccCCCCeEEEEECCCC----CEEEEEEcCCCeEEEEeCCCCcccCC-CCCCccccC--Cc
Q 001935 350 IVVVKDFVTRA----IISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRSG-SGNHKYDWN--SS 418 (994)
Q Consensus 350 ~V~VwDl~s~~----~i~~~~aHtspIsaLaFSPdG----tlLATAS~dGt~IrVwdi~p~~~~~~-sG~~~~~~~--~s 418 (994)
.+.||...... .++.+..|+.||.+|+|.|+- .+||+|+.|| ||||.+......-. -+....+.. -.
T Consensus 200 ~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~ 277 (361)
T KOG2445|consen 200 KVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLP 277 (361)
T ss_pred ceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccccc
Confidence 78888876543 678889999999999999975 5899999987 99999974210000 000000000 11
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 419 ~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
...+-+| +.|++.||.+.|.-.|..|+++++||+|++|+-+
T Consensus 278 v~~vs~~--~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 278 VEKVSEL--DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eEEeeec--cCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 1222233 4477899999999999999999999999999864
No 83
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4.7e-12 Score=133.89 Aligned_cols=262 Identities=15% Similarity=0.203 Sum_probs=170.0
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCC--cceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDAS--NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~-G~qVWDv~~~g--~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
..|+|.|.-+..|. -++.|+++..+ .++|+.+.+.+ ++...|.+|.|||.-+.+. .|. |
T Consensus 8 t~H~D~IHda~lDy-------ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa-hPk-------~--- 69 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDY-------YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA-HPK-------F--- 69 (299)
T ss_pred hhhhhhhhHhhhhh-------hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec-ccc-------c---
Confidence 45777777666653 23455655555 59999998777 5667788999999999986 221 2
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe---CCCcEEEEEecCC---
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSPR--- 203 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~---f~S~V~sV~~S~~--- 203 (994)
+.+||.++ ++++|.||.-.+|+.-+... +.+.|.+|++-|.
T Consensus 70 G~iLAScs---------------------------------YDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheyg 116 (299)
T KOG1332|consen 70 GTILASCS---------------------------------YDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYG 116 (299)
T ss_pred CcEeeEee---------------------------------cCceEEEEecCCCchhhhhhhhhhcccceeecccccccc
Confidence 34788643 46899999999886544443 3468999999883
Q ss_pred -eEEEE-eCCeEEEEECCCC-ce-e-EEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCC
Q 001935 204 -IVAVG-LATQIYCFDALTL-EN-K-FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT 278 (994)
Q Consensus 204 -iLAVg-l~~~I~IwDa~Tl-e~-l-~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qslt 278 (994)
+|+++ .|+.|.|++..+- .. - .....|+. +.+.++.. +..
T Consensus 117 l~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-------------GvnsVswa-------pa~--------------- 161 (299)
T KOG1332|consen 117 LLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-------------GVNSVSWA-------PAS--------------- 161 (299)
T ss_pred eEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-------------ccceeeec-------CcC---------------
Confidence 56664 4668999876643 11 0 00111211 11222221 110
Q ss_pred CCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCC
Q 001935 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (994)
Q Consensus 279 p~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s 358 (994)
-| |.++.+- .+++. .-+++++.|..|+||++.+
T Consensus 162 --------~~--g~~~~~~-------~~~~~------------------------------krlvSgGcDn~VkiW~~~~ 194 (299)
T KOG1332|consen 162 --------AP--GSLVDQG-------PAAKV------------------------------KRLVSGGCDNLVKIWKFDS 194 (299)
T ss_pred --------CC--ccccccC-------ccccc------------------------------ceeeccCCccceeeeecCC
Confidence 00 1111000 00000 0134678899999999998
Q ss_pred Cc--EEEEeccCCCCeEEEEECCCC----CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 001935 359 RA--IISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 432 (994)
Q Consensus 359 ~~--~i~~~~aHtspIsaLaFSPdG----tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a 432 (994)
++ .-.+|++|+.-|..+|+.|.- ..||++|.||+ +.||..... ..+|..+ .|.+| ..
T Consensus 195 ~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-viIwt~~~e---------~e~wk~t--ll~~f-----~~ 257 (299)
T KOG1332|consen 195 DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-VIIWTKDEE---------YEPWKKT--LLEEF-----PD 257 (299)
T ss_pred cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-EEEEEecCc---------cCccccc--ccccC-----Cc
Confidence 64 335699999999999999986 46999999888 679987421 1233332 23332 35
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 433 ~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
.++.++||..|..||++..|..|.+|+=+..|
T Consensus 258 ~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 258 VVWRVSWSLSGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred ceEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence 79999999999999999999999999966544
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.42 E-value=2.6e-11 Score=129.25 Aligned_cols=222 Identities=14% Similarity=0.187 Sum_probs=157.6
Q ss_pred CeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCcc
Q 001935 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (994)
Q Consensus 75 ~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~ 154 (994)
.++.++..+..+++||+- .+++...+....+.+. +.+.|++ .+++++.
T Consensus 78 d~~atas~dk~ir~wd~r-~~k~~~~i~~~~eni~-i~wsp~g-------------~~~~~~~----------------- 125 (313)
T KOG1407|consen 78 DLFATASGDKTIRIWDIR-SGKCTARIETKGENIN-ITWSPDG-------------EYIAVGN----------------- 125 (313)
T ss_pred cceEEecCCceEEEEEec-cCcEEEEeeccCcceE-EEEcCCC-------------CEEEEec-----------------
Confidence 344444455679999984 4556555554444443 4666655 3556521
Q ss_pred ccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--C-eEEEEeCCeEEEEECCCCceeEEEeecC
Q 001935 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--R-IVAVGLATQIYCFDALTLENKFSVLTYP 231 (994)
Q Consensus 155 ~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~-iLAVgl~~~I~IwDa~Tle~l~tL~t~p 231 (994)
.+..|.+.|.++.+.++..+|.-.+..+.++- + +++....+.|.|..-..+|.+++|..||
T Consensus 126 ----------------kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~ 189 (313)
T KOG1407|consen 126 ----------------KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP 189 (313)
T ss_pred ----------------CcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC
Confidence 13579999999999999999988888888764 3 3344445678888777888888888887
Q ss_pred CccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccce
Q 001935 232 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK 311 (994)
Q Consensus 232 ~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~k 311 (994)
. +.+++. ++|+|..+
T Consensus 190 s---------------nCicI~--------------------------------f~p~Gryf------------------ 204 (313)
T KOG1407|consen 190 S---------------NCICIE--------------------------------FDPDGRYF------------------ 204 (313)
T ss_pred c---------------ceEEEE--------------------------------ECCCCceE------------------
Confidence 5 122211 11222111
Q ss_pred eeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC
Q 001935 312 TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG 391 (994)
Q Consensus 312 tlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dG 391 (994)
+.|+.|..|.+||+...-++..|.-|.-||..|+||.||+|||+||+ +
T Consensus 205 -------------------------------A~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSE-D 252 (313)
T KOG1407|consen 205 -------------------------------ATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASE-D 252 (313)
T ss_pred -------------------------------eeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCc-c
Confidence 23556778999999999999999999999999999999999999999 6
Q ss_pred CeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC---------CeEEEEecC
Q 001935 392 NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK---------GTCHVFVLS 461 (994)
Q Consensus 392 t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~d---------GTVhIw~I~ 461 (994)
+.|-|=++.+ | ..+.+.. +.+.-..+||.|..-.||-+.+| |+++||-+.
T Consensus 253 h~IDIA~vet-------G----------d~~~eI~---~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 253 HFIDIAEVET-------G----------DRVWEIP---CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ceEEeEeccc-------C----------CeEEEee---ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 7787766653 4 3556553 34567889999999999988776 577887654
No 85
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.42 E-value=2.3e-11 Score=143.09 Aligned_cols=300 Identities=15% Similarity=0.164 Sum_probs=197.9
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcce--------EeeeeccCCEEEEEEecCCCCCCCCCCcc
Q 001935 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFN--------ELVSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (994)
Q Consensus 56 kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~--------ells~hdGpV~~v~~lP~p~~s~~~D~F~ 127 (994)
+.+|.|+..- ..... .+.|++=.+|.+.+|.++..+.-. -.+.+|..-|+.+.++-+.
T Consensus 320 ~~kiks~dv~--~~~~~--~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~---------- 385 (888)
T KOG0306|consen 320 SAKIKSFDVT--PSGGT--ENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS---------- 385 (888)
T ss_pred hhheeEEEEE--ecCCc--ceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc----------
Confidence 4566665543 22222 245555456779999987633220 1133466678888876332
Q ss_pred ccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeE
Q 001935 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV 205 (994)
Q Consensus 128 ~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iL 205 (994)
-+++ ++ +...++||+.++++|++++... .+++..|-| +.+
T Consensus 386 ---~~~~--Sg--------------------------------a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 386 ---ILLA--SG--------------------------------AGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYI 427 (888)
T ss_pred ---eeee--ec--------------------------------CCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceE
Confidence 1222 21 1147999999999999999765 677777766 566
Q ss_pred EEEeC-CeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--c-EE-EEccCCeeeccCCccCCCcCCCC
Q 001935 206 AVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--R-WL-AYASNTLLLSNSGRLSPQNLTPS 280 (994)
Q Consensus 206 AVgl~-~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--R-wL-Ayas~~~~iwd~G~~s~qsltp~ 280 (994)
++|.. +.+.+||+....++-++..|.. ...+++++| + ++ +.+..++.+|+.--+.. .
T Consensus 428 v~G~k~Gel~vfdlaS~~l~Eti~AHdg-------------aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~--~--- 489 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASASLVETIRAHDG-------------AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS--V--- 489 (888)
T ss_pred EEeccCCceEEEEeehhhhhhhhhcccc-------------ceeeeeecCCCCceEEecCCcEEEEEeEEEEec--c---
Confidence 66765 5799999998887777776543 235678877 3 33 34445688897411100 0
Q ss_pred CCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 001935 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (994)
Q Consensus 281 ~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~ 360 (994)
|+...-+.... ..++| + +++ .......+|+++++++ +--|.+|+||-+.+.+
T Consensus 490 -------~gt~~k~lsl~----------~~rtL-----e-l~d-dvL~v~~Spdgk~LaV----sLLdnTVkVyflDtlK 541 (888)
T KOG0306|consen 490 -------PGTQKKVLSLK----------HTRTL-----E-LED-DVLCVSVSPDGKLLAV----SLLDNTVKVYFLDTLK 541 (888)
T ss_pred -------Ccccceeeeec----------cceEE-----e-ccc-cEEEEEEcCCCcEEEE----EeccCeEEEEEeccee
Confidence 00000000000 00111 0 111 1223445677776654 3458899999999999
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 001935 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (994)
Q Consensus 361 ~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFS 440 (994)
....+-+|.-||.+|.+|||+++++|+|. +++|+||-+.- | .|-..|. + |...|.++.|-
T Consensus 542 FflsLYGHkLPV~smDIS~DSklivTgSA-DKnVKiWGLdF-------G----------DCHKS~f-A-HdDSvm~V~F~ 601 (888)
T KOG0306|consen 542 FFLSLYGHKLPVLSMDISPDSKLIVTGSA-DKNVKIWGLDF-------G----------DCHKSFF-A-HDDSVMSVQFL 601 (888)
T ss_pred eeeeecccccceeEEeccCCcCeEEeccC-CCceEEecccc-------c----------hhhhhhh-c-ccCceeEEEEc
Confidence 99999999999999999999999999999 56799999853 3 2323332 2 34679999999
Q ss_pred cCCCEEEEEeCCCeEEEEecCCCCCCccccccc
Q 001935 441 HYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (994)
Q Consensus 441 pDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~ 473 (994)
|+...+.+++.|+.|+-|+-..+.....+..|.
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~ 634 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHH 634 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheeeccch
Confidence 999999999999999999988888877777774
No 86
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.41 E-value=7.3e-12 Score=142.50 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=77.1
Q ss_pred ccCCCCeEEEEECCCCc---EEEEeccCCC--CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCc
Q 001935 344 DMDNAGIVVVKDFVTRA---IISQFKAHTS--PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~---~i~~~~aHts--pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s 418 (994)
.+..||.|++||..+.. ....=.||.. .|++|+||+||++|+|-+.|++ ++|||+... .
T Consensus 334 agc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKvWDLrq~------k--------- 397 (641)
T KOG0772|consen 334 AGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKVWDLRQF------K--------- 397 (641)
T ss_pred hcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eeeeecccc------c---------
Confidence 45579999999986543 2333458988 9999999999999999999776 899999642 1
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCC------CeEEEEecCCCCC
Q 001935 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK------GTCHVFVLSPFGG 465 (994)
Q Consensus 419 ~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~d------GTVhIw~I~~~gg 465 (994)
++|.....-.+...-.+++||||.+.|++|+.- |++.+|+-..+..
T Consensus 398 -kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 398 -KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT 449 (641)
T ss_pred -cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee
Confidence 344443222233456789999999999998753 5677777655543
No 87
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=2.2e-11 Score=132.51 Aligned_cols=190 Identities=19% Similarity=0.211 Sum_probs=115.8
Q ss_pred EEEecCCeEEE-EeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccCC--eeeccCCc
Q 001935 197 MVRCSPRIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNT--LLLSNSGR 271 (994)
Q Consensus 197 sV~~S~~iLAV-gl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~~--~~iwd~G~ 271 (994)
.|+-+..+|+. +++..|.|||+. ++++.++.+.... ..-.|++| |+||.++-+ +.+|..
T Consensus 194 GiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~-------------n~~aavSP~GRFia~~gFTpDVkVwE~-- 257 (420)
T KOG2096|consen 194 GIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS-------------NYDAAVSPDGRFIAVSGFTPDVKVWEP-- 257 (420)
T ss_pred eecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc-------------ccceeeCCCCcEEEEecCCCCceEEEE--
Confidence 44445567776 456689999998 8899999876541 23467888 999988754 345641
Q ss_pred cCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeE
Q 001935 272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351 (994)
Q Consensus 272 ~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V 351 (994)
.|.+|...+=+... -.|.++-..++ .+.|++... ..++.+.||..
T Consensus 258 ------------------------~f~kdG~fqev~rv-f~LkGH~saV~------~~aFsn~S~----r~vtvSkDG~w 302 (420)
T KOG2096|consen 258 ------------------------IFTKDGTFQEVKRV-FSLKGHQSAVL------AAAFSNSST----RAVTVSKDGKW 302 (420)
T ss_pred ------------------------EeccCcchhhhhhh-heeccchhhee------eeeeCCCcc----eeEEEecCCcE
Confidence 01111110000000 01122211111 112222111 23467899999
Q ss_pred EEEECCC-------CcEEEEec-----cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcc
Q 001935 352 VVKDFVT-------RAIISQFK-----AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (994)
Q Consensus 352 ~VwDl~s-------~~~i~~~~-----aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~ 419 (994)
+|||..- .+.+..+. +-..|+ .|+++|+|..||.+. |+.|++|.... |
T Consensus 303 riwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~--gs~l~~~~se~-------g---------- 362 (420)
T KOG2096|consen 303 RIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSF--GSDLKVFASED-------G---------- 362 (420)
T ss_pred EEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeec--CCceEEEEccc-------C----------
Confidence 9999863 23333332 234566 899999999999766 78899999764 3
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 001935 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
..+-+|.+- +...|.+|+|++||+++|+++++ -++|+.
T Consensus 363 ~~~~~~e~~-h~~~Is~is~~~~g~~~atcGdr-~vrv~~ 400 (420)
T KOG2096|consen 363 KDYPELEDI-HSTTISSISYSSDGKYIATCGDR-YVRVIR 400 (420)
T ss_pred ccchhHHHh-hcCceeeEEecCCCcEEeeecce-eeeeec
Confidence 233344443 44569999999999999999866 567765
No 88
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.40 E-value=3.5e-11 Score=140.86 Aligned_cols=200 Identities=17% Similarity=0.201 Sum_probs=136.6
Q ss_pred CCEEEEEECCCCeEEEEEeCCC---cEE-EEEe---cCCeEEEE-eCCeEEEEECCCCceeEEEeecCCccccCCCcccc
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRS---SVC-MVRC---SPRIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 243 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S---~V~-sV~~---S~~iLAVg-l~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~v 243 (994)
+++++||+-+.++++.+..|.. -|- .+.+ .+.+|+++ .|..|.+|...+.+++++|..|..
T Consensus 34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~s----------- 102 (745)
T KOG0301|consen 34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKS----------- 102 (745)
T ss_pred CCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcccc-----------
Confidence 4689999999888877554432 221 1322 33446664 466799999999999999999876
Q ss_pred ccCccceEEcc----cEEEEc--cCCeeeccCCccC--CCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeecc
Q 001935 244 NVGYGPMAVGP----RWLAYA--SNTLLLSNSGRLS--PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSK 315 (994)
Q Consensus 244 nv~~gplAlgp----RwLAya--s~~~~iwd~G~~s--~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~ 315 (994)
+.|+++. . |-.+ ..++.+|..|.+. .+.++.++.+.. .
T Consensus 103 ----nVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~--------------------------~--- 148 (745)
T KOG0301|consen 103 ----NVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVA--------------------------S--- 148 (745)
T ss_pred ----ceeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeee--------------------------e---
Confidence 2344442 2 1111 1355667544321 111111100000 0
Q ss_pred ccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEE
Q 001935 316 YCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNIN 395 (994)
Q Consensus 316 y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~Ir 395 (994)
+|. . ...+++.|.+|++|.- ++.+.+|.+|+.-|..|++=+++. ++++|.||. ||
T Consensus 149 -----l~e-----------~-----~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir 203 (745)
T KOG0301|consen 149 -----LPE-----------N-----TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IR 203 (745)
T ss_pred -----cCC-----------C-----cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCce-EE
Confidence 010 0 2346789999999976 678999999999999999998876 558999776 99
Q ss_pred EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 396 Vwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
.|++. | ..|++++ |++ .-|++|+-.++++.+++++.|+|++||+..
T Consensus 204 ~w~~~--------g----------e~l~~~~-ght-n~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 204 LWDLD--------G----------EVLLEMH-GHT-NFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEecc--------C----------ceeeeee-ccc-eEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 99984 3 4777764 544 569999988999999999999999999976
No 89
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=1.8e-12 Score=140.66 Aligned_cols=108 Identities=24% Similarity=0.344 Sum_probs=95.1
Q ss_pred cccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceE
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~-aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~ 421 (994)
++++.||.|+||.+.+|.++..|. ||+..|.||.||.|+..+.++|. ++++||--++. | .+
T Consensus 279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf-D~tvRiHGlKS-------G----------K~ 340 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASF-DQTVRIHGLKS-------G----------KC 340 (508)
T ss_pred hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccc-cceEEEecccc-------c----------hh
Confidence 467899999999999999999997 99999999999999999999999 56799988753 4 57
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcccc
Q 001935 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 470 (994)
Q Consensus 422 l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~ 470 (994)
|.+| ||++ .-|....|++||.++.++|.||||+||......+..+++
T Consensus 341 LKEf-rGHs-Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk 387 (508)
T KOG0275|consen 341 LKEF-RGHS-SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFK 387 (508)
T ss_pred HHHh-cCcc-ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhcc
Confidence 7777 6765 569999999999999999999999999998877766654
No 90
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.39 E-value=4.6e-11 Score=134.01 Aligned_cols=241 Identities=17% Similarity=0.203 Sum_probs=164.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~-G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
..+|.-.|+|+.|.+ +...++.+..+ -|+||.+.. .....++..|+++|..+..-|++
T Consensus 257 ~~Gh~kki~~v~~~~-------~~~~v~~aSad~~i~vws~~~-~s~~~~~~~h~~~V~~ls~h~tg------------- 315 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHK-------DLDTVITASADEIIRVWSVPL-SSEPTSSRPHEEPVTGLSLHPTG------------- 315 (506)
T ss_pred ccCcceEEEEEEecc-------chhheeecCCcceEEeecccc-ccCccccccccccceeeeeccCC-------------
Confidence 567777889999875 22344555554 599999954 44667777899999999988776
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-C--cEEEEEecCC--eE
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-S--SVCMVRCSPR--IV 205 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S--~V~sV~~S~~--iL 205 (994)
-+|+..+ .+++..|.|.++|.++...... + .+.+..|+|+ ++
T Consensus 316 eYllsAs---------------------------------~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLif 362 (506)
T KOG0289|consen 316 EYLLSAS---------------------------------NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIF 362 (506)
T ss_pred cEEEEec---------------------------------CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEE
Confidence 2444211 1368899999999988877664 3 3579999996 34
Q ss_pred EEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCC
Q 001935 206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (994)
Q Consensus 206 AVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~ 284 (994)
+.+. ++.|+|||+......-.+..|..| .+-|+|+.|
T Consensus 363 gtgt~d~~vkiwdlks~~~~a~Fpght~~--------------------vk~i~FsEN---------------------- 400 (506)
T KOG0289|consen 363 GTGTPDGVVKIWDLKSQTNVAKFPGHTGP--------------------VKAISFSEN---------------------- 400 (506)
T ss_pred eccCCCceEEEEEcCCccccccCCCCCCc--------------------eeEEEeccC----------------------
Confidence 4444 457999998876544333333221 022333322
Q ss_pred CcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE
Q 001935 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ 364 (994)
Q Consensus 285 stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~ 364 (994)
|+. ++.+..|+.|++||+...+...+
T Consensus 401 ------GY~------------------------------------------------Lat~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 401 ------GYW------------------------------------------------LATAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred ------ceE------------------------------------------------EEEEecCCeEEEEEehhhcccce
Confidence 221 12345788899999999887777
Q ss_pred eccC-CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 001935 365 FKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (994)
Q Consensus 365 ~~aH-tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg 443 (994)
|.-. ..+|.+++|+++|++|+.++ ..++||..... ...+.++.++. .+.+....+.|-.+.
T Consensus 427 ~~l~~~~~v~s~~fD~SGt~L~~~g---~~l~Vy~~~k~-------------~k~W~~~~~~~--~~sg~st~v~Fg~~a 488 (506)
T KOG0289|consen 427 IQLDEKKEVNSLSFDQSGTYLGIAG---SDLQVYICKKK-------------TKSWTEIKELA--DHSGLSTGVRFGEHA 488 (506)
T ss_pred eeccccccceeEEEcCCCCeEEeec---ceeEEEEEecc-------------cccceeeehhh--hcccccceeeecccc
Confidence 7643 34899999999999999984 45777775421 11223444442 133456889999999
Q ss_pred CEEEEEeCCCeEEEEec
Q 001935 444 QWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 444 ~~LAsgS~dGTVhIw~I 460 (994)
++|+++|.|...+|+++
T Consensus 489 q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 489 QYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeeccchhheEEeec
Confidence 99999999999999876
No 91
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.39 E-value=2.5e-11 Score=136.14 Aligned_cols=224 Identities=15% Similarity=0.214 Sum_probs=156.0
Q ss_pred eEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCcc
Q 001935 76 QVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (994)
Q Consensus 76 ~vL~lGy~~-G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~ 154 (994)
..+++|..+ ..-++|.+ .+.+..++.+|.-.|..+.+.|+- .+++. .
T Consensus 232 ~~ilTGG~d~~av~~d~~-s~q~l~~~~Gh~kki~~v~~~~~~-------------~~v~~--a---------------- 279 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKP-SNQILATLKGHTKKITSVKFHKDL-------------DTVIT--A---------------- 279 (506)
T ss_pred CcceecCCCCceEEEecc-hhhhhhhccCcceEEEEEEeccch-------------hheee--c----------------
Confidence 345555555 79999984 577888999999889988887653 11221 1
Q ss_pred ccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEeec
Q 001935 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTY 230 (994)
Q Consensus 155 ~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~-f~S~V~sV~~S~--~iLAVgl~~-~I~IwDa~Tle~l~tL~t~ 230 (994)
.++..+++|+.-..++...+. +.++|..+..++ ++|+.+.++ .+.+.|+.++.++.....-
T Consensus 280 ---------------Sad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~ 344 (506)
T KOG0289|consen 280 ---------------SADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE 344 (506)
T ss_pred ---------------CCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence 124689999998777666554 457999888877 566665555 5666678877765443321
Q ss_pred CCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccc
Q 001935 231 PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS 310 (994)
Q Consensus 231 p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ 310 (994)
.+ ++ .+...+ +
T Consensus 345 ~s---------~v--~~ts~~----------------------------------f------------------------ 355 (506)
T KOG0289|consen 345 TS---------DV--EYTSAA----------------------------------F------------------------ 355 (506)
T ss_pred cc---------cc--eeEEee----------------------------------E------------------------
Confidence 11 00 011111 1
Q ss_pred eeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC
Q 001935 311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY 390 (994)
Q Consensus 311 ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~d 390 (994)
.|++ ..+..+..||.|+|||+.++..++.|.+|++||.+|+|+-+|-+|||+..|
T Consensus 356 ----------HpDg---------------Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add 410 (506)
T KOG0289|consen 356 ----------HPDG---------------LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD 410 (506)
T ss_pred ----------cCCc---------------eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecC
Confidence 1211 122356689999999999999999999999999999999999999999997
Q ss_pred CCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 001935 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 391 Gt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
|. |++||++.. .....+.+. +...|.++.|.+.|++|++++.|=+|++++
T Consensus 411 ~~-V~lwDLRKl---------------~n~kt~~l~---~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 411 GS-VKLWDLRKL---------------KNFKTIQLD---EKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred Ce-EEEEEehhh---------------cccceeecc---ccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 76 999999632 001223332 223589999999999999998888888877
No 92
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.4e-11 Score=130.81 Aligned_cols=248 Identities=13% Similarity=0.107 Sum_probs=167.2
Q ss_pred CCCCCcEEEEEEeeccC------CCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCc
Q 001935 53 EDLKDQVTWAGFDRLEY------GPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGF 126 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~------~~~~~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F 126 (994)
.+.+.-.....||.-++ ..+...++++...++.+||||+.....-...+..|...|..+.+.+.-
T Consensus 46 ~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~--------- 116 (311)
T KOG0277|consen 46 TDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVR--------- 116 (311)
T ss_pred CCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEecccccc---------
Confidence 35566666677775222 122235666666677799999877666667777888888888765421
Q ss_pred cccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC---
Q 001935 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--- 202 (994)
Q Consensus 127 ~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--- 202 (994)
|..+++ ++| +++|+||+...++-++|++.+ +.||...++|
T Consensus 117 ---r~~~lt-----------------------sSW----------D~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~ 160 (311)
T KOG0277|consen 117 ---RRIFLT-----------------------SSW----------DGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIP 160 (311)
T ss_pred ---ceeEEe-----------------------ecc----------CCceEeecCCCCcceEeecCCccEEEEEecCCCCC
Confidence 222232 134 479999999999999998654 6899999998
Q ss_pred CeEEE-EeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCC
Q 001935 203 RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSG 281 (994)
Q Consensus 203 ~iLAV-gl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~ 281 (994)
++++. +.++.++|||++..-....|..|... +++..|
T Consensus 161 nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~E-----------------il~cdw------------------------- 198 (311)
T KOG0277|consen 161 NLFASASGDGTLRLWDVRSPGKFMSIEAHNSE-----------------ILCCDW------------------------- 198 (311)
T ss_pred CeEEEccCCceEEEEEecCCCceeEEEeccce-----------------eEeecc-------------------------
Confidence 56665 55678999998754333334333210 111111
Q ss_pred CCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc-
Q 001935 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA- 360 (994)
Q Consensus 282 ~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~- 360 (994)
++| ....+++++.|+.|++||+.+.+
T Consensus 199 --------------------------------~ky---------------------~~~vl~Tg~vd~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 199 --------------------------------SKY---------------------NHNVLATGGVDNLVRGWDIRNLRT 225 (311)
T ss_pred --------------------------------ccc---------------------CCcEEEecCCCceEEEEehhhccc
Confidence 111 11123467889999999999854
Q ss_pred EEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 001935 361 IISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (994)
Q Consensus 361 ~i~~~~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaF 439 (994)
.+..|.+|.-.|..++|||.- .+|||||-| -++|||+.+..- + ....++ +|.--|..+.|
T Consensus 226 pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD-mT~riw~~~~~d-----s---------~~e~~~----~HtEFv~g~Dw 286 (311)
T KOG0277|consen 226 PLFELNGHGLAVRKVKFSPHHASLLASASYD-MTVRIWDPERQD-----S---------AIETVD----HHTEFVCGLDW 286 (311)
T ss_pred cceeecCCceEEEEEecCcchhhHhhhcccc-ceEEecccccch-----h---------hhhhhh----ccceEEecccc
Confidence 678899999999999999976 589999984 559999986310 1 011121 12234667778
Q ss_pred cc-CCCEEEEEeCCCeEEEEe
Q 001935 440 SH-YSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 440 Sp-Dg~~LAsgS~dGTVhIw~ 459 (994)
|+ +..++|+++-|+++.||+
T Consensus 287 s~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 287 SLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ccccCceeeecccccceeeec
Confidence 86 778999999999999997
No 93
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.38 E-value=1.2e-11 Score=144.34 Aligned_cols=218 Identities=17% Similarity=0.252 Sum_probs=141.9
Q ss_pred CEEEEEECCCCeEEEEEeCC-CcEEEEEecC-----CeEEEEeCC-eEEEEECC-CCceeEEEeecCCccccCCCccccc
Q 001935 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-----RIVAVGLAT-QIYCFDAL-TLENKFSVLTYPVPQLAGQGAVGIN 244 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~-S~V~sV~~S~-----~iLAVgl~~-~I~IwDa~-Tle~l~tL~t~p~p~~~~~g~~~vn 244 (994)
+++|+|||..-++.+.++-| +.|+++.++. ++||.+..+ -|++||+. +..++++|..|...
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss----------- 549 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS----------- 549 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc-----------
Confidence 68999999999988888754 7999999875 588887766 49999976 45567777776541
Q ss_pred cCccce--EEcc---cEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeecccccc
Q 001935 245 VGYGPM--AVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 319 (994)
Q Consensus 245 v~~gpl--Algp---RwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~ 319 (994)
...+ |-.. +.|..+.+..+.....+- + +.|.+--+ + -+++++..
T Consensus 550 --ITsvKFa~~gln~~MiscGADksimFr~~qk--------------~-~~g~~f~r-----------~-t~t~~ktT-- 598 (1080)
T KOG1408|consen 550 --ITSVKFACNGLNRKMISCGADKSIMFRVNQK--------------A-SSGRLFPR-----------H-TQTLSKTT-- 598 (1080)
T ss_pred --eeEEEEeecCCceEEEeccCchhhheehhcc--------------c-cCceeccc-----------c-ccccccce--
Confidence 0111 1110 222222211111100000 0 00110000 0 01111110
Q ss_pred ccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc---CCCCeEEEEECCCCCEEEEEEcCCCeEEE
Q 001935 320 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA---HTSPISALCFDPSGTLLVTASVYGNNINI 396 (994)
Q Consensus 320 l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a---HtspIsaLaFSPdGtlLATAS~dGt~IrV 396 (994)
+| -+...|.|++. +.+.+|..|+|||+.+++.+..|++ |.+.+-.+..+|+|-||||.-. ++++.+
T Consensus 599 lY------Dm~Vdp~~k~v----~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs-dktl~~ 667 (1080)
T KOG1408|consen 599 LY------DMAVDPTSKLV----VTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS-DKTLCF 667 (1080)
T ss_pred EE------EeeeCCCcceE----EEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec-CCceEE
Confidence 01 11223445533 4678999999999999999999986 6677889999999999999888 566999
Q ss_pred EeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 397 wdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
||.-. | .++.+. -|| .-.|+.+-|++|++.|.+.+.||-|.||.+..
T Consensus 668 ~Df~s-------g----------EcvA~m-~GH-sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 668 VDFVS-------G----------ECVAQM-TGH-SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEecc-------c----------hhhhhh-cCc-chheeeeeecccchhheeecCCceEEEEECch
Confidence 99743 3 455444 354 34699999999999999999999999999976
No 94
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=8.9e-11 Score=140.88 Aligned_cols=241 Identities=16% Similarity=0.209 Sum_probs=161.1
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
..|++.-+-+.||. ++..|.++..+| +++|+.....+.-+++..+...|.+++.- . .
T Consensus 10 yaht~G~t~i~~d~-------~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~-------------s--~ 67 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP-------DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY-------------S--N 67 (933)
T ss_pred hhccCceEEEEEcC-------CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec-------------c--c
Confidence 45777766666763 344666665655 99999865435556666566677776643 1 1
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE-eCCCcEEEEEe--cCCeEEEE
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL-RFRSSVCMVRC--SPRIVAVG 208 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL-~f~S~V~sV~~--S~~iLAVg 208 (994)
.+++.+ .+++|.+|.+.+++.-..| +|.-++..+++ ++..+|.|
T Consensus 68 ~f~~~s---------------------------------~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaag 114 (933)
T KOG1274|consen 68 HFLTGS---------------------------------EQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAG 114 (933)
T ss_pred ceEEee---------------------------------ccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEee
Confidence 334321 1368999999887753222 44445555555 55688887
Q ss_pred eCC-eEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcC
Q 001935 209 LAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (994)
Q Consensus 209 l~~-~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stS 287 (994)
.++ .|+|-+..+......+..|..|. ++ |-|.
T Consensus 115 sdD~~vK~~~~~D~s~~~~lrgh~apV---------------l~-----l~~~--------------------------- 147 (933)
T KOG1274|consen 115 SDDTAVKLLNLDDSSQEKVLRGHDAPV---------------LQ-----LSYD--------------------------- 147 (933)
T ss_pred cCceeEEEEeccccchheeecccCCce---------------ee-----eeEc---------------------------
Confidence 776 59999888877777777665431 11 1111
Q ss_pred CCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 001935 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (994)
Q Consensus 288 p~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a 367 (994)
|. +.+ ++....||.|+|||+.++.+..++..
T Consensus 148 p~-~~f------------------------------------------------LAvss~dG~v~iw~~~~~~~~~tl~~ 178 (933)
T KOG1274|consen 148 PK-GNF------------------------------------------------LAVSSCDGKVQIWDLQDGILSKTLTG 178 (933)
T ss_pred CC-CCE------------------------------------------------EEEEecCceEEEEEcccchhhhhccc
Confidence 11 111 12345789999999998876555543
Q ss_pred -------C-CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 001935 368 -------H-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (994)
Q Consensus 368 -------H-tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaF 439 (994)
- ...+..++|+|+|..||....++. |.||+... +.++++|+--.....+.+++|
T Consensus 179 v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~-----------------we~~f~Lr~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 179 VDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKG-----------------WELQFKLRDKLSSSKFSDLQW 240 (933)
T ss_pred CCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCC-----------------ceeheeecccccccceEEEEE
Confidence 2 457788999999666666666454 89999752 257888865555556999999
Q ss_pred ccCCCEEEEEeCCCeEEEEecCC
Q 001935 440 SHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 440 SpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
||.|+|||+++.+|.|-||+++.
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCCcEEeeeccCCcEEEEeccc
Confidence 99999999999999999999983
No 95
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.7e-11 Score=139.74 Aligned_cols=238 Identities=16% Similarity=0.158 Sum_probs=179.3
Q ss_pred CCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCc
Q 001935 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (994)
Q Consensus 74 ~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~ 153 (994)
..++|++|....+-+|+- ..+.+.++...+...|..|.+.|++ ..|||-.
T Consensus 187 s~n~laValg~~vylW~~-~s~~v~~l~~~~~~~vtSv~ws~~G-------------~~LavG~---------------- 236 (484)
T KOG0305|consen 187 SANVLAVALGQSVYLWSA-SSGSVTELCSFGEELVTSVKWSPDG-------------SHLAVGT---------------- 236 (484)
T ss_pred cCCeEEEEecceEEEEec-CCCceEEeEecCCCceEEEEECCCC-------------CEEEEee----------------
Confidence 456999999999999997 4688888888878899999998776 3677621
Q ss_pred cccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC--CCcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEE-Eee
Q 001935 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFS-VLT 229 (994)
Q Consensus 154 ~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f--~S~V~sV~~S~~iLAVgl-~~~I~IwDa~Tle~l~t-L~t 229 (994)
..+.|.|||.++.+.+.++.. ...|-+++++..+|.+|. +..|..||++..+.... +..
T Consensus 237 -----------------~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~ 299 (484)
T KOG0305|consen 237 -----------------SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQG 299 (484)
T ss_pred -----------------cCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhc
Confidence 136899999999999999977 468999999998888866 45799999887664333 222
Q ss_pred cCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhccc
Q 001935 230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (994)
Q Consensus 230 ~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi 309 (994)
|... .|. |++..
T Consensus 300 H~qe---------------VCg-----Lkws~------------------------------------------------ 311 (484)
T KOG0305|consen 300 HRQE---------------VCG-----LKWSP------------------------------------------------ 311 (484)
T ss_pred ccce---------------eee-----eEECC------------------------------------------------
Confidence 2210 011 11110
Q ss_pred ceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCC-CCEEEEEE
Q 001935 310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-GTLLVTAS 388 (994)
Q Consensus 310 ~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPd-GtlLATAS 388 (994)
+. ..+++++.|..|.|||......+.+|..|+..|-+|+|+|- ..+||||+
T Consensus 312 ------------------------d~----~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 312 ------------------------DG----NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred ------------------------CC----CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcC
Confidence 01 12356789999999999888899999999999999999984 56899875
Q ss_pred -cCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE--eCCCeEEEEecCCCCC
Q 001935 389 -VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV--SSKGTCHVFVLSPFGG 465 (994)
Q Consensus 389 -~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsg--S~dGTVhIw~I~~~gg 465 (994)
..++.|++|++.. | .++.... +...|.+|.||+..+-|+++ -.++-|.||+......
T Consensus 364 Gs~D~~i~fwn~~~-------g----------~~i~~vd---tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 364 GSADRCIKFWNTNT-------G----------ARIDSVD---TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred CCcccEEEEEEcCC-------C----------cEecccc---cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence 3356799999853 3 3444433 55789999999999777764 4456799999999888
Q ss_pred CcccccccC
Q 001935 466 DSGFQTLSS 474 (994)
Q Consensus 466 ~~~~~~H~s 474 (994)
...+..|+.
T Consensus 424 ~~~l~gH~~ 432 (484)
T KOG0305|consen 424 VAELLGHTS 432 (484)
T ss_pred eeeecCCcc
Confidence 888888864
No 96
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=2.8e-12 Score=151.21 Aligned_cols=110 Identities=16% Similarity=0.258 Sum_probs=81.9
Q ss_pred cCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 001935 345 MDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~-~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~ 423 (994)
+...|.+++||+... +...+|.||.+||.+|.++|++.+|||++.| ..|+||+.... ....+.
T Consensus 195 ~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD-K~vkiWd~t~~---------------~~~~~~ 258 (839)
T KOG0269|consen 195 IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD-KMVKIWDMTDS---------------RAKPKH 258 (839)
T ss_pred ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCC-ccEEEEeccCC---------------Ccccee
Confidence 346788999999864 4668899999999999999999999999975 55999998521 012333
Q ss_pred EEecccccccEEEEEEccCCCE-EEEEeC--CCeEEEEecCC-CCCCccccccc
Q 001935 424 KLHRGITSATIQDICFSHYSQW-IAIVSS--KGTCHVFVLSP-FGGDSGFQTLS 473 (994)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~-LAsgS~--dGTVhIw~I~~-~gg~~~~~~H~ 473 (994)
+.. |.++|..+.|-|+.++ ||+++. |-.||||+|.. |=...++..|.
T Consensus 259 tIn---Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~ 309 (839)
T KOG0269|consen 259 TIN---TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT 309 (839)
T ss_pred EEe---ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence 332 5689999999999875 455543 45699999964 43345667775
No 97
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.36 E-value=5.5e-11 Score=127.18 Aligned_cols=213 Identities=15% Similarity=0.143 Sum_probs=152.9
Q ss_pred eeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEE
Q 001935 100 LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYS 179 (994)
Q Consensus 100 lls~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWD 179 (994)
++.+|+-|+..|++--++ .||..|+- +.++.+|-
T Consensus 5 ~l~GHERplTqiKyN~eG-------------DLlFscaK---------------------------------D~~~~vw~ 38 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREG-------------DLLFSCAK---------------------------------DSTPTVWY 38 (327)
T ss_pred ccccCccccceEEecCCC-------------cEEEEecC---------------------------------CCCceEEE
Confidence 456788899998866443 57776432 35788999
Q ss_pred CCCCeEEEEEeCC-CcEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEeecCCccccCCCccccccCccceEE--c
Q 001935 180 FQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAV--G 253 (994)
Q Consensus 180 lktge~V~tL~f~-S~V~sV~~S~--~iLAVgl~~-~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAl--g 253 (994)
..+|+.+-+++.| +.|++++.+. +.|+.+.++ .++|||+.+++.+.++.+... .-.+.| +
T Consensus 39 s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~--------------Vk~~~F~~~ 104 (327)
T KOG0643|consen 39 SLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSP--------------VKRVDFSFG 104 (327)
T ss_pred ecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCe--------------eEEEeeccC
Confidence 9999999999765 6898777765 677776655 699999999999988875211 001111 1
Q ss_pred ccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCC
Q 001935 254 PRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS 333 (994)
Q Consensus 254 pRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~ 333 (994)
..++.+..+.
T Consensus 105 gn~~l~~tD~---------------------------------------------------------------------- 114 (327)
T KOG0643|consen 105 GNLILASTDK---------------------------------------------------------------------- 114 (327)
T ss_pred CcEEEEEehh----------------------------------------------------------------------
Confidence 1111111100
Q ss_pred ccccccccccccCCCCeEEEEECC-------CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccC
Q 001935 334 VWKVGRHAGADMDNAGIVVVKDFV-------TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 406 (994)
Q Consensus 334 ~~k~g~~~~as~s~dG~V~VwDl~-------s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~ 406 (994)
..++.+.|.++|+. +.+++..+..|.+.|+.+-|+|-|..|+++.++|. |++||+..
T Consensus 115 ----------~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~-is~~da~~----- 178 (327)
T KOG0643|consen 115 ----------QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS-ISIYDART----- 178 (327)
T ss_pred ----------hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc-EEEEEccc-----
Confidence 11345667777776 45567888889999999999999999999999887 99999964
Q ss_pred CCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccccc
Q 001935 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471 (994)
Q Consensus 407 ~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~ 471 (994)
| ..+.+-.+ .|...|.+|.||+|..++.++|.|.|.++|++.......++.+
T Consensus 179 --g----------~~~v~s~~-~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 179 --G----------KELVDSDE-EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred --C----------ceeeechh-hhccccccccccCCcceEEecccCccceeeeccceeeEEEeee
Confidence 3 23333222 2456899999999999999999999999999988776665544
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.36 E-value=2.7e-12 Score=149.11 Aligned_cols=111 Identities=15% Similarity=0.223 Sum_probs=93.2
Q ss_pred cccCCCCeEEEEECCCCc--E--------EEEec-cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCC
Q 001935 343 ADMDNAGIVVVKDFVTRA--I--------ISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~--~--------i~~~~-aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~ 411 (994)
++++-|+.|.|||+.++. . ...+. +|..+|.+|+.++.|+++|+|+.. ..||+||-.. +
T Consensus 134 aSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte-k~lr~wDprt-------~-- 203 (735)
T KOG0308|consen 134 ASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE-KDLRLWDPRT-------C-- 203 (735)
T ss_pred EecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc-cceEEecccc-------c--
Confidence 356789999999999762 2 22333 899999999999999999999985 4699999653 2
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccccccc
Q 001935 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (994)
Q Consensus 412 ~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~ 473 (994)
..+.+|+ ||+ ..|.+|-.++||+.+.++|+||||+||+|....+..++..|.
T Consensus 204 --------~kimkLr-GHT-dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~ 255 (735)
T KOG0308|consen 204 --------KKIMKLR-GHT-DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK 255 (735)
T ss_pred --------cceeeee-ccc-cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc
Confidence 5788885 765 569999999999999999999999999999999988888884
No 99
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.35 E-value=9.7e-12 Score=134.71 Aligned_cols=100 Identities=18% Similarity=0.250 Sum_probs=84.8
Q ss_pred CCCeEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 001935 347 NAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~---~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~ 423 (994)
.--++++||+.+-++...- ..|+..|.++.+|+.|++-+|||.||. |++||=- +.+++.
T Consensus 236 dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGV-----------------S~rCv~ 297 (430)
T KOG0640|consen 236 DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGV-----------------SNRCVR 297 (430)
T ss_pred CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeeccc-----------------cHHHHH
Confidence 3447899999988765333 259999999999999999999999887 9999932 126788
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
++.+.+..+.|.+..|..+|+||.+++.|.+|++|.|....
T Consensus 298 t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 298 TIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred HHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 88888888899999999999999999999999999998753
No 100
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=8.8e-10 Score=115.55 Aligned_cols=256 Identities=15% Similarity=0.129 Sum_probs=172.5
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcc----eE-eeeeccCCEEEEEEecCCCCCCCCCCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF----NE-LVSKRDGPVSFLQMQPFPVKDDGCEGF 126 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v----~e-lls~hdGpV~~v~~lP~p~~s~~~D~F 126 (994)
--||..|..+.|. +.+.+|++|..+. +++.-.+. +.+ .+ -++-|||.|+.++|+-+|.
T Consensus 86 khhkgsiyc~~ws-------~~geliatgsndk~ik~l~fn~-dt~~~~g~dle~nmhdgtirdl~fld~~~-------- 149 (350)
T KOG0641|consen 86 KHHKGSIYCTAWS-------PCGELIATGSNDKTIKVLPFNA-DTCNATGHDLEFNMHDGTIRDLAFLDDPE-------- 149 (350)
T ss_pred cccCccEEEEEec-------CccCeEEecCCCceEEEEeccc-ccccccCcceeeeecCCceeeeEEecCCC--------
Confidence 3466667766664 4678999998875 67765421 111 12 2567999999999997662
Q ss_pred cccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEE-EecCCe
Q 001935 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMV-RCSPRI 204 (994)
Q Consensus 127 ~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV-~~S~~i 204 (994)
+...+|+. .+ . -+++|.+-|-.+|+-.+.+..+ +.|+++ .++.-+
T Consensus 150 -s~~~il~s-~g-----a--------------------------gdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m 196 (350)
T KOG0641|consen 150 -SGGAILAS-AG-----A--------------------------GDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAM 196 (350)
T ss_pred -cCceEEEe-cC-----C--------------------------CcceEEEeecCCCCcceeecCCcccEEEEEEecCcE
Confidence 22345553 11 0 1478888899999999998755 578876 567778
Q ss_pred EEEEeC-CeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCC
Q 001935 205 VAVGLA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS 283 (994)
Q Consensus 205 LAVgl~-~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S 283 (994)
+|.+.. .+|++||++-..++.++.+.-.- . +...-|
T Consensus 197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~---------~--glessa-------------------------------- 233 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHD---------G--GLESSA-------------------------------- 233 (350)
T ss_pred EEccCCCceEEEEeeeccceeeeccCcccC---------C--Ccccce--------------------------------
Confidence 887664 57999998876666665532110 0 000000
Q ss_pred CCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEE
Q 001935 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS 363 (994)
Q Consensus 284 ~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~ 363 (994)
|+-++ .+|.++ .++++..|....+||+..++.+.
T Consensus 234 ----------vaav~--------------------------------vdpsgr----ll~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 234 ----------VAAVA--------------------------------VDPSGR----LLASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred ----------eEEEE--------------------------------ECCCcc----eeeeccCCCceEEEEeeCCceee
Confidence 10000 011111 23356678889999999999999
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 001935 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (994)
Q Consensus 364 ~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg 443 (994)
.|..|+..|.++.|||...+|.|+|- +..|++=|++ |. +. ..|-..--+.+..++..+.|.|..
T Consensus 268 ~f~phsadir~vrfsp~a~yllt~sy-d~~ikltdlq--------gd----la---~el~~~vv~ehkdk~i~~rwh~~d 331 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSPGAHYLLTCSY-DMKIKLTDLQ--------GD----LA---HELPIMVVAEHKDKAIQCRWHPQD 331 (350)
T ss_pred eeCCCccceeEEEeCCCceEEEEecc-cceEEEeecc--------cc----hh---hcCceEEEEeccCceEEEEecCcc
Confidence 99999999999999999999999999 5569999985 21 00 111112223345555668999999
Q ss_pred CEEEEEeCCCeEEEEecCC
Q 001935 444 QWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 444 ~~LAsgS~dGTVhIw~I~~ 462 (994)
--+.++|.|.|+.+|.+++
T Consensus 332 ~sfisssadkt~tlwa~~~ 350 (350)
T KOG0641|consen 332 FSFISSSADKTATLWALNG 350 (350)
T ss_pred ceeeeccCcceEEEeccCC
Confidence 9999999999999999763
No 101
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.33 E-value=3.9e-12 Score=144.01 Aligned_cols=206 Identities=14% Similarity=0.146 Sum_probs=154.7
Q ss_pred ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEE
Q 001935 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (994)
Q Consensus 97 v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVr 176 (994)
..-++++|...|.++++.|. +..||+. + + .+++|+
T Consensus 206 ~~~~~~gH~kgvsai~~fp~------------~~hLlLS--~------g-------------------------mD~~vk 240 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPK------------KGHLLLS--G------G-------------------------MDGLVK 240 (503)
T ss_pred heeeccCCccccchhhhccc------------eeeEEEe--c------C-------------------------CCceEE
Confidence 44566778888999998863 2246553 1 1 258999
Q ss_pred EEECCC-CeEEEEEeCCC-cEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceE
Q 001935 177 FYSFQS-HCYEHVLRFRS-SVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMA 251 (994)
Q Consensus 177 LWDlkt-ge~V~tL~f~S-~V~sV~~S~---~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplA 251 (994)
||++.. +.+++++..++ +|.+++|+. ++|.++.|..|++||+.|++++.++.+.-.| ..
T Consensus 241 lW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~----------------~c 304 (503)
T KOG0282|consen 241 LWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVP----------------TC 304 (503)
T ss_pred EEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCc----------------ee
Confidence 999986 89999998765 899999997 6899999999999999999998877653221 00
Q ss_pred EcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccC
Q 001935 252 VGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSP 331 (994)
Q Consensus 252 lgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~ 331 (994)
+ -| .|++-.
T Consensus 305 v-----kf---------------------------~pd~~n--------------------------------------- 313 (503)
T KOG0282|consen 305 V-----KF---------------------------HPDNQN--------------------------------------- 313 (503)
T ss_pred e-----ec---------------------------CCCCCc---------------------------------------
Confidence 0 00 111100
Q ss_pred CCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCC
Q 001935 332 NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411 (994)
Q Consensus 332 s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~ 411 (994)
.+..|..|+.|+.||+.+++++.....|-.+|..+.|=++|+.++|+|.++ .+|||+....
T Consensus 314 ---------~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk-s~riWe~~~~--------- 374 (503)
T KOG0282|consen 314 ---------IFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK-SVRIWENRIP--------- 374 (503)
T ss_pred ---------EEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc-cEEEEEcCCC---------
Confidence 112456899999999999999999999999999999999999999999966 5999997531
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 412 ~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
+.+-+...-..+ .+-+|+-+|.+.|+++=|.|.-|-||.+.+
T Consensus 375 -------v~ik~i~~~~~h--smP~~~~~P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 375 -------VPIKNIADPEMH--TMPCLTLHPNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred -------ccchhhcchhhc--cCcceecCCCCCeehhhccCceEEEEeccc
Confidence 012222322222 457899999999999999999999999755
No 102
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=6e-11 Score=129.04 Aligned_cols=241 Identities=19% Similarity=0.219 Sum_probs=159.9
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCC
Q 001935 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (994)
Q Consensus 74 ~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~ 152 (994)
-+.+|++|..+| +.|||... -..-.+++.|--||.++.+++++ .+|+..+
T Consensus 34 ~G~~lAvGc~nG~vvI~D~~T-~~iar~lsaH~~pi~sl~WS~dg-------------r~LltsS--------------- 84 (405)
T KOG1273|consen 34 WGDYLAVGCANGRVVIYDFDT-FRIARMLSAHVRPITSLCWSRDG-------------RKLLTSS--------------- 84 (405)
T ss_pred CcceeeeeccCCcEEEEEccc-cchhhhhhccccceeEEEecCCC-------------CEeeeec---------------
Confidence 356999999998 89999965 44778999999999999999876 2344311
Q ss_pred ccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCC----eEEEEeCCeEEEEECCCCceeEEEe
Q 001935 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR----IVAVGLATQIYCFDALTLENKFSVL 228 (994)
Q Consensus 153 ~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~~----iLAVgl~~~I~IwDa~Tle~l~tL~ 228 (994)
.+..|++||+..|.+++.++|+++|+...+.|+ .+|.-.+..-++-++.+ ..+++.
T Consensus 85 ------------------~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~L 144 (405)
T KOG1273|consen 85 ------------------RDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVL 144 (405)
T ss_pred ------------------CCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC--Cceeec
Confidence 246899999999999999999999999999882 33333344433433333 122221
Q ss_pred ecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcc
Q 001935 229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (994)
Q Consensus 229 t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~G 308 (994)
. -... |.. ..+++
T Consensus 145 p-----------------------------~d~d-------~dl------------n~sas------------------- 157 (405)
T KOG1273|consen 145 P-----------------------------KDDD-------GDL------------NSSAS------------------- 157 (405)
T ss_pred c-----------------------------CCCc-------ccc------------ccccc-------------------
Confidence 1 0000 000 00000
Q ss_pred cceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCC-CCeEEEEECCCCCEEEEE
Q 001935 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-SPISALCFDPSGTLLVTA 387 (994)
Q Consensus 309 i~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHt-spIsaLaFSPdGtlLATA 387 (994)
-..++..+++ +.+|...|.+.|+|+.+.++++.|+--+ ..|-.|-|+..|+.|++-
T Consensus 158 -------------------~~~fdr~g~y----IitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiN 214 (405)
T KOG1273|consen 158 -------------------HGVFDRRGKY----IITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIIN 214 (405)
T ss_pred -------------------cccccCCCCE----EEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEe
Confidence 0011122222 2356778999999999999999999876 889999999999999998
Q ss_pred EcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC-eEEEEecCC
Q 001935 388 SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG-TCHVFVLSP 462 (994)
Q Consensus 388 S~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dG-TVhIw~I~~ 462 (994)
.. +++||+|++..--.-+..| .....++|+--.....-.+++||.||.|++++|.+. .+.||.-..
T Consensus 215 ts-DRvIR~ye~~di~~~~r~~--------e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 215 TS-DRVIRTYEISDIDDEGRDG--------EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred cC-CceEEEEehhhhcccCccC--------CcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence 88 7899999986321101101 112233443222222345799999999999998664 488997443
No 103
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.30 E-value=6.1e-10 Score=118.33 Aligned_cols=176 Identities=14% Similarity=0.122 Sum_probs=120.9
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeE-EEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCc
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV-AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iL-AVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~ 247 (994)
+++|++||+.+++.+.++.....+..+.+++ +.| +++. ++.|++||+.+++....+..+..
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--------------- 74 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD--------------- 74 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC---------------
Confidence 4789999999999999998777777888877 345 4443 46899999998776554432111
Q ss_pred cceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCC
Q 001935 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (994)
Q Consensus 248 gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s 327 (994)
+..+++.+ ++..+.
T Consensus 75 ------~~~~~~~~---------------------------~g~~l~--------------------------------- 88 (300)
T TIGR03866 75 ------PELFALHP---------------------------NGKILY--------------------------------- 88 (300)
T ss_pred ------ccEEEECC---------------------------CCCEEE---------------------------------
Confidence 01122221 111110
Q ss_pred CccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCC
Q 001935 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG 407 (994)
Q Consensus 328 ~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~ 407 (994)
+.+..++.|++||+.+.+.+..+..+ ..+..++|+|+|.+|++++.++..+.+|+...
T Consensus 89 ---------------~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~------ 146 (300)
T TIGR03866 89 ---------------IANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT------ 146 (300)
T ss_pred ---------------EEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCC------
Confidence 11235789999999998888887644 34678999999999999998777788888742
Q ss_pred CCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEecCCCC
Q 001935 408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG 464 (994)
Q Consensus 408 sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS-~dGTVhIw~I~~~g 464 (994)
+ ..+..+..+ ..+..++|+||+++|++++ .+++|++|++....
T Consensus 147 -~----------~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 147 -Y----------EIVDNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK 190 (300)
T ss_pred -C----------eEEEEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence 2 233332222 2356799999999996655 58999999997643
No 104
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.30 E-value=1.3e-11 Score=136.05 Aligned_cols=215 Identities=18% Similarity=0.177 Sum_probs=140.7
Q ss_pred CCEEEEEECCCCeEEEEEeCC-CcEEEEEecC-CeEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccc
Q 001935 172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP-RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 249 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~-S~V~sV~~S~-~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gp 249 (994)
++.|+|||+.+.+++.+++.+ +.|.+|.+.. .++.||.+.+|+.|-+.- ..++++.+... +.++. -
T Consensus 88 DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~-------~~gId----h 155 (433)
T KOG0268|consen 88 DGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKSV-------YLGID----H 155 (433)
T ss_pred CceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeecccc-------ccccc----c
Confidence 578999999999999999876 5899999877 677788888999997654 35666654221 00000 0
Q ss_pred eEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCc
Q 001935 250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV 329 (994)
Q Consensus 250 lAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~ 329 (994)
+ -...-.|..|..+.|||.-+..| +.+... |. .+....
T Consensus 156 ~-~~~~~FaTcGe~i~IWD~~R~~P------v~smsw---------------------G~--------------Dti~sv 193 (433)
T KOG0268|consen 156 H-RKNSVFATCGEQIDIWDEQRDNP------VSSMSW---------------------GA--------------DSISSV 193 (433)
T ss_pred c-cccccccccCceeeecccccCCc------cceeec---------------------CC--------------CceeEE
Confidence 0 00123456677788998533211 111100 00 000111
Q ss_pred cCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCC
Q 001935 330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG 409 (994)
Q Consensus 330 s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG 409 (994)
.+||.- ...++++..|+.|.|||+.....+..+.- +..-+.|||+|.+--+++|++ ++++..||+... -
T Consensus 194 kfNpvE---TsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~E-D~nlY~~DmR~l------~ 262 (433)
T KOG0268|consen 194 KFNPVE---TSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANE-DHNLYTYDMRNL------S 262 (433)
T ss_pred ecCCCc---chheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccc-cccceehhhhhh------c
Confidence 222211 12345778899999999998876544332 223467999997777777777 788999998531 0
Q ss_pred CCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 410 NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 410 ~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
..+ ..++|+..| |.++.|||.|+-+++||-|.||+||.++..
T Consensus 263 ----------~p~-~v~~dhvsA-V~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 263 ----------RPL-NVHKDHVSA-VMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred ----------ccc-hhhccccee-EEEeccCCCcchhccccccceEEEeecCCC
Confidence 122 233676655 999999999999999999999999998764
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.29 E-value=1.3e-10 Score=131.82 Aligned_cols=259 Identities=17% Similarity=0.226 Sum_probs=162.7
Q ss_pred CCeEEEEEecCcEEEEEccCCCcceE---eee-eccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCC
Q 001935 74 FKQVLLLGYQNGFQVLDVEDASNFNE---LVS-KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQN 149 (994)
Q Consensus 74 ~~~vL~lGy~~G~qVWDv~~~g~v~e---lls-~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~ 149 (994)
.-+-+-+|..++++|||+...++-.- +-. .++.-++.++++|++ |.| ++ .|+
T Consensus 430 ~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg------------rtL-iv-GGe---------- 485 (705)
T KOG0639|consen 430 PTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG------------RTL-IV-GGE---------- 485 (705)
T ss_pred CcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCC------------ceE-Ee-ccc----------
Confidence 34556777799999999965443211 111 246678888888876 233 32 321
Q ss_pred CCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC---cEEEEEecCC--e-EEEEeCCeEEEEECCCCce
Q 001935 150 RSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS---SVCMVRCSPR--I-VAVGLATQIYCFDALTLEN 223 (994)
Q Consensus 150 ~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S---~V~sV~~S~~--i-LAVgl~~~I~IwDa~Tle~ 223 (994)
..+|.||||.+-+.--..+..+ ..++++.+++ + ++++.++.|.|||+.+...
T Consensus 486 ----------------------astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 486 ----------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred ----------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 2589999998766433334443 4578888883 3 4456678899999999888
Q ss_pred eEEEeecCCccccCCCccccccCccceEEcc---c-EEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeeh
Q 001935 224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---R-WLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 299 (994)
Q Consensus 224 l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp---R-wLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~ 299 (994)
+..+.+|+. +...+.++. + |--=..+.++-||
T Consensus 544 VrqfqGhtD-------------GascIdis~dGtklWTGGlDntvRcWD------------------------------- 579 (705)
T KOG0639|consen 544 VRQFQGHTD-------------GASCIDISKDGTKLWTGGLDNTVRCWD------------------------------- 579 (705)
T ss_pred eecccCCCC-------------CceeEEecCCCceeecCCCccceeehh-------------------------------
Confidence 888888865 122334432 1 1111112333444
Q ss_pred hhhhhhhcccceeeccc--cccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE
Q 001935 300 EHSKQFAAGLSKTLSKY--CQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF 377 (994)
Q Consensus 300 dssk~la~Gi~ktlS~y--~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaF 377 (994)
+..|. .+..| ...+..-+. ..+.+|- +-+...+.|-|..... ....++.-|.+=|.+|.|
T Consensus 580 -----lregr--qlqqhdF~SQIfSLg~----cP~~dWl------avGMens~vevlh~sk-p~kyqlhlheScVLSlKF 641 (705)
T KOG0639|consen 580 -----LREGR--QLQQHDFSSQIFSLGY----CPTGDWL------AVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKF 641 (705)
T ss_pred -----hhhhh--hhhhhhhhhhheeccc----CCCccce------eeecccCcEEEEecCC-ccceeecccccEEEEEEe
Confidence 22221 00000 001110000 0112232 2345667777776554 345678889999999999
Q ss_pred CCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 001935 378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (994)
Q Consensus 378 SPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhI 457 (994)
.+.|+++++.+. +..+++|+. |. | ..+++... ...|.++..|-|.++|++||.|....|
T Consensus 642 a~cGkwfvStGk-DnlLnawrt-Py------G----------asiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 642 AYCGKWFVSTGK-DNLLNAWRT-PY------G----------ASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred cccCceeeecCc-hhhhhhccC-cc------c----------cceeeccc---cCcceeeeeccCceEEEecCCCcceEE
Confidence 999999999998 566999997 53 4 35666542 457999999999999999999999999
Q ss_pred EecC
Q 001935 458 FVLS 461 (994)
Q Consensus 458 w~I~ 461 (994)
|.|.
T Consensus 701 YeV~ 704 (705)
T KOG0639|consen 701 YEVI 704 (705)
T ss_pred EEEe
Confidence 9863
No 106
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=6.3e-12 Score=147.38 Aligned_cols=215 Identities=12% Similarity=0.171 Sum_probs=153.2
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCc
Q 001935 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (994)
Q Consensus 75 ~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~ 153 (994)
.++++.|..+. +-+|.+.... ..--|-+|+++|.+|.+.+.- -||+. +
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~-~i~S~~~hespIeSl~f~~~E-------------~Llaa--g--------------- 88 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPN-AITSLTGHESPIESLTFDTSE-------------RLLAA--G--------------- 88 (825)
T ss_pred ceeeccCCCceeeccccccCCc-hhheeeccCCcceeeecCcch-------------hhhcc--c---------------
Confidence 46777777765 5699885433 222356899999999977421 24442 1
Q ss_pred cccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEE-EeCCeEEEEECCCCceeEEEee
Q 001935 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV-GLATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 154 ~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--~iLAV-gl~~~I~IwDa~Tle~l~tL~t 229 (994)
..+++|+||||..+..+++|..+ ..+..|.|+| .+.|. +++..+.+||++.+-+.++...
T Consensus 89 ----------------sasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s 152 (825)
T KOG0267|consen 89 ----------------SASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS 152 (825)
T ss_pred ----------------ccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC
Confidence 02479999999999999999654 6899999999 35555 4455799999997777776665
Q ss_pred cCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhccc
Q 001935 230 YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (994)
Q Consensus 230 ~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi 309 (994)
|+.- .+.|++.+ + |.+
T Consensus 153 ~~~v--------------------v~~l~lsP---------------------------~-Gr~---------------- 168 (825)
T KOG0267|consen 153 HTRV--------------------VDVLRLSP---------------------------D-GRW---------------- 168 (825)
T ss_pred Ccce--------------------eEEEeecC---------------------------C-Cce----------------
Confidence 4320 12222222 1 101
Q ss_pred ceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 001935 310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 389 (994)
Q Consensus 310 ~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~ 389 (994)
.++++.|.+|+|||+..|+.+..|+.|..+|.+|-|+|..-+|+++|.
T Consensus 169 --------------------------------v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~ 216 (825)
T KOG0267|consen 169 --------------------------------VASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS 216 (825)
T ss_pred --------------------------------eeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC
Confidence 113456889999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 001935 390 YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (994)
Q Consensus 390 dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~d 452 (994)
|++ +++||+... ..+-. .+.....|.+++|+||++.+++|-..
T Consensus 217 d~t-v~f~dletf-----------------e~I~s--~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 217 DRT-VRFWDLETF-----------------EVISS--GKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred Cce-eeeecccee-----------------EEeec--cCCccCCceeeeecCCceeeecCchh
Confidence 655 999998631 11111 12223579999999999998887554
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.28 E-value=3.3e-10 Score=123.53 Aligned_cols=221 Identities=15% Similarity=0.208 Sum_probs=142.3
Q ss_pred CCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCC
Q 001935 74 FKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (994)
Q Consensus 74 ~~~vL~lGy~~-G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~ 152 (994)
.+..++.|..+ .|.|||+...-++ ..|..|.|.|++++|.|.. ..+ .||. +.
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~ql-g~ll~HagsitaL~F~~~~---------S~s-hLlS--~s-------------- 104 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQL-GILLSHAGSITALKFYPPL---------SKS-HLLS--GS-------------- 104 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhhh-cceeccccceEEEEecCCc---------chh-heee--ec--------------
Confidence 46788888765 6999999655444 4455579999999998753 222 2433 11
Q ss_pred ccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--C-eEEEEeCCeEEEEECCCCceeEEEe
Q 001935 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--R-IVAVGLATQIYCFDALTLENKFSVL 228 (994)
Q Consensus 153 ~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--~-iLAVgl~~~I~IwDa~Tle~l~tL~ 228 (994)
-++.|.+|+...-+++++++-+ ..|..|++.| + -|.|+.|+.++.||+.+++.-+.+.
T Consensus 105 ------------------dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~ 166 (362)
T KOG0294|consen 105 ------------------DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN 166 (362)
T ss_pred ------------------CCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec
Confidence 1368999999999999999865 5899999988 3 3557888899999999988766554
Q ss_pred ecCCccccCCCccccccCccceEEcc---cEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhh
Q 001935 229 TYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (994)
Q Consensus 229 t~p~p~~~~~g~~~vnv~~gplAlgp---RwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~l 305 (994)
--..+ ..+.+.+ +|.....+.+.+|-.+..+ + . +.+
T Consensus 167 L~~~a--------------t~v~w~~~Gd~F~v~~~~~i~i~q~d~A~-------------------v----~----~~i 205 (362)
T KOG0294|consen 167 LKNKA--------------TLVSWSPQGDHFVVSGRNKIDIYQLDNAS-------------------V----F----REI 205 (362)
T ss_pred cCCcc--------------eeeEEcCCCCEEEEEeccEEEEEecccHh-------------------H----h----hhh
Confidence 21111 0122222 2222222222233211000 0 0 000
Q ss_pred hcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE--CCCCCE
Q 001935 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCF--DPSGTL 383 (994)
Q Consensus 306 a~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaF--SPdGtl 383 (994)
..-. +. .|. ++. . . -.+..+..++.|.+||..++.+...|.||...|-.+.| +|++.+
T Consensus 206 ~~~~-r~---l~~---------~~l--~----~-~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~ 265 (362)
T KOG0294|consen 206 ENPK-RI---LCA---------TFL--D----G-SELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEY 265 (362)
T ss_pred hccc-cc---eee---------eec--C----C-ceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceE
Confidence 0000 00 000 000 0 0 01335678899999999999999999999999999984 789999
Q ss_pred EEEEEcCCCeEEEEeCCC
Q 001935 384 LVTASVYGNNINIFRIMP 401 (994)
Q Consensus 384 LATAS~dGt~IrVwdi~p 401 (994)
|+|||.||. |+|||+..
T Consensus 266 lvTaSSDG~-I~vWd~~~ 282 (362)
T KOG0294|consen 266 LVTASSDGF-IKVWDIDM 282 (362)
T ss_pred EEEeccCce-EEEEEccc
Confidence 999999886 99999853
No 108
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2e-09 Score=117.60 Aligned_cols=244 Identities=16% Similarity=0.231 Sum_probs=161.6
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEe--cCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcE
Q 001935 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGY--QNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (994)
Q Consensus 55 ~kd~V~wa~Fd~le~~~~~~~~vL~lGy--~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpL 132 (994)
+|=.|.-++|-. ....++.... ++.+|..++.+ ......+.+|...|..+.+.|.. ..
T Consensus 55 kkyG~~~~~Fth------~~~~~i~sStk~d~tIryLsl~d-NkylRYF~GH~~~V~sL~~sP~~-------------d~ 114 (311)
T KOG1446|consen 55 KKYGVDLACFTH------HSNTVIHSSTKEDDTIRYLSLHD-NKYLRYFPGHKKRVNSLSVSPKD-------------DT 114 (311)
T ss_pred ccccccEEEEec------CCceEEEccCCCCCceEEEEeec-CceEEEcCCCCceEEEEEecCCC-------------Ce
Confidence 455566677753 1234554444 45799999964 67888999999999999999853 12
Q ss_pred EEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-cEEEEEecCCeEEEEeCC
Q 001935 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-SVCMVRCSPRIVAVGLAT 211 (994)
Q Consensus 133 LAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S-~V~sV~~S~~iLAVgl~~ 211 (994)
.+..+ .+++||+||++..+|...+...+ +|.+.....-++|++...
T Consensus 115 FlS~S---------------------------------~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 115 FLSSS---------------------------------LDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEecc---------------------------------cCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCC
Confidence 23211 25799999999999888887664 555544445677777766
Q ss_pred -eEEEEECCCCc-eeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCC
Q 001935 212 -QIYCFDALTLE-NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (994)
Q Consensus 212 -~I~IwDa~Tle-~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~ 289 (994)
.|++||++.+. -.++.-..+.+. . .+ |. -+.|||+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~---------~---------~e-----------w~--------------~l~FS~d 198 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDND---------E---------AE-----------WT--------------DLEFSPD 198 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCC---------c---------cc-----------ee--------------eeEEcCC
Confidence 89999998763 111111100000 0 01 10 1123444
Q ss_pred CCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCC
Q 001935 290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT 369 (994)
Q Consensus 290 ~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHt 369 (994)
|..++. ....+.+.+.|.-+|.++..|..|.
T Consensus 199 GK~iLl-------------------------------------------------sT~~s~~~~lDAf~G~~~~tfs~~~ 229 (311)
T KOG1446|consen 199 GKSILL-------------------------------------------------STNASFIYLLDAFDGTVKSTFSGYP 229 (311)
T ss_pred CCEEEE-------------------------------------------------EeCCCcEEEEEccCCcEeeeEeecc
Confidence 333211 2356788999999999999998886
Q ss_pred CCe---EEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 001935 370 SPI---SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (994)
Q Consensus 370 spI---saLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (994)
..- ...+|+|||+++.+++.||+ |+||++.. | .++..+ +|.....+.++.|.|---.+
T Consensus 230 ~~~~~~~~a~ftPds~Fvl~gs~dg~-i~vw~~~t-------g----------~~v~~~-~~~~~~~~~~~~fnP~~~mf 290 (311)
T KOG1446|consen 230 NAGNLPLSATFTPDSKFVLSGSDDGT-IHVWNLET-------G----------KKVAVL-RGPNGGPVSCVRFNPRYAMF 290 (311)
T ss_pred CCCCcceeEEECCCCcEEEEecCCCc-EEEEEcCC-------C----------cEeeEe-cCCCCCCccccccCCceeee
Confidence 543 45689999999999999887 99999964 4 456666 56555678999999965555
Q ss_pred EEEeCCCeEEEEecCCCC
Q 001935 447 AIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 447 AsgS~dGTVhIw~I~~~g 464 (994)
|+ .+..+-+|-....+
T Consensus 291 ~s--a~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 291 VS--ASSNLVFWLPDEDA 306 (311)
T ss_pred ee--cCceEEEEeccccc
Confidence 54 45667788765443
No 109
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.27 E-value=1.2e-10 Score=131.44 Aligned_cols=107 Identities=18% Similarity=0.266 Sum_probs=88.1
Q ss_pred ccccCCCCeEEEEECC--CCcEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCc
Q 001935 342 GADMDNAGIVVVKDFV--TRAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~--s~~~i~~~~aHtspIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s 418 (994)
+++++.|+.+.|||+. +.+......||+.+|.|++|+|- +.+|||||.|++ +++||++.- .
T Consensus 243 F~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL------~--------- 306 (422)
T KOG0264|consen 243 FGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLRNL------N--------- 306 (422)
T ss_pred heeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeechhc------c---------
Confidence 3467889999999999 56677888999999999999985 468999999776 899999642 1
Q ss_pred ceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEecCCCCCCc
Q 001935 419 HVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDS 467 (994)
Q Consensus 419 ~~~l~~L~RG~t~a~I~sIaFSpDg-~~LAsgS~dGTVhIw~I~~~gg~~ 467 (994)
.+++.|. | +...|..|.|||.- ..||+++.|+.++||++..-|.+.
T Consensus 307 -~~lh~~e-~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 307 -KPLHTFE-G-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred -cCceecc-C-CCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 3677774 4 44679999999964 688999999999999998877764
No 110
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.27 E-value=3.2e-10 Score=133.02 Aligned_cols=212 Identities=15% Similarity=0.133 Sum_probs=150.7
Q ss_pred EEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCcccc
Q 001935 78 LLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV 156 (994)
Q Consensus 78 L~lGy~~-G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~v 156 (994)
|++|..+ .+.||.+. ..+-..+|.+|...|.++...-++ . +++
T Consensus 74 l~~g~~D~~i~v~~~~-~~~P~~~LkgH~snVC~ls~~~~~--------------~--~iS------------------- 117 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLS-QAEPLYTLKGHKSNVCSLSIGEDG--------------T--LIS------------------- 117 (745)
T ss_pred eEeecccceEEEEecC-CCCchhhhhccccceeeeecCCcC--------------c--eEe-------------------
Confidence 4445554 57899985 455567888999999999855322 2 222
Q ss_pred ccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC-CeEEEEe-CCeEEEEECCCCceeEEEeecCCc
Q 001935 157 RDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP-RIVAVGL-ATQIYCFDALTLENKFSVLTYPVP 233 (994)
Q Consensus 157 r~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~S~V~sV~~S~-~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p 233 (994)
|+|| +|+++|-. +++..+++- .+.|++|..-+ +.++.|. |..|++|.. .+.+.++..|..-
T Consensus 118 --gSWD----------~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~ 181 (745)
T KOG0301|consen 118 --GSWD----------STAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDC 181 (745)
T ss_pred --cccc----------cceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccchhh
Confidence 4564 78999964 566666764 46899998766 5555554 557999986 4455666555330
Q ss_pred cccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceee
Q 001935 234 QLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTL 313 (994)
Q Consensus 234 ~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktl 313 (994)
.|-||.-+.
T Consensus 182 --------------------VRgL~vl~~--------------------------------------------------- 190 (745)
T KOG0301|consen 182 --------------------VRGLAVLDD--------------------------------------------------- 190 (745)
T ss_pred --------------------eeeeEEecC---------------------------------------------------
Confidence 122222110
Q ss_pred ccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCe
Q 001935 314 SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN 393 (994)
Q Consensus 314 S~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~ 393 (994)
+ .+.++++||.|+.||+ +++++....+|++-|.+++..+++.+++|+++|++
T Consensus 191 ----------~----------------~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt- 242 (745)
T KOG0301|consen 191 ----------S----------------HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT- 242 (745)
T ss_pred ----------C----------------CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCce-
Confidence 0 1236789999999999 78899999999999999998899999999999765
Q ss_pred EEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc-cEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 394 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 394 IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a-~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
+|||+.. .+...+. .++ .||++.+=++|. |++|++||-|+||...+.
T Consensus 243 lriW~~~-------------------e~~q~I~---lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 243 LRIWKKD-------------------ECVQVIT---LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEEeecC-------------------ceEEEEe---cCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 9999973 2444442 223 699999887775 778889999999998754
No 111
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.27 E-value=4.2e-10 Score=124.47 Aligned_cols=238 Identities=13% Similarity=0.129 Sum_probs=145.8
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEE
Q 001935 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (994)
Q Consensus 55 ~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLL 133 (994)
+-+.|.|..+. +...+|+.|..+| +-+|.+.. +...+++++|..++.+=+|+|++. .+
T Consensus 147 e~~dieWl~WH-------p~a~illAG~~DGsvWmw~ip~-~~~~kv~~Gh~~~ct~G~f~pdGK-------------r~ 205 (399)
T KOG0296|consen 147 EVEDIEWLKWH-------PRAHILLAGSTDGSVWMWQIPS-QALCKVMSGHNSPCTCGEFIPDGK-------------RI 205 (399)
T ss_pred ccCceEEEEec-------ccccEEEeecCCCcEEEEECCC-cceeeEecCCCCCcccccccCCCc-------------eE
Confidence 34455566554 3678999999988 89999954 467899999999999999999862 23
Q ss_pred EEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC----CcEEEEEecCCeEEEEe
Q 001935 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR----SSVCMVRCSPRIVAVGL 209 (994)
Q Consensus 134 AvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~----S~V~sV~~S~~iLAVgl 209 (994)
+... .+++|++||+++|+.++.+.-. .+..++...+..++.|.
T Consensus 206 ~tgy---------------------------------~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~ 252 (399)
T KOG0296|consen 206 LTGY---------------------------------DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN 252 (399)
T ss_pred EEEe---------------------------------cCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence 3211 2479999999999999998621 23333334445555555
Q ss_pred CC-eEEEEECCCCceeEEEee-cCC--ccccCCCccccccCccceEEcc--cEEE--EccCCeeeccCCccCCCcCCCCC
Q 001935 210 AT-QIYCFDALTLENKFSVLT-YPV--PQLAGQGAVGINVGYGPMAVGP--RWLA--YASNTLLLSNSGRLSPQNLTPSG 281 (994)
Q Consensus 210 ~~-~I~IwDa~Tle~l~tL~t-~p~--p~~~~~g~~~vnv~~gplAlgp--RwLA--yas~~~~iwd~G~~s~qsltp~~ 281 (994)
.+ .+++-+..+++.+..... .|. ++.. ..++ ..-.++++. .+.| +-...+.|||.....+.+.-
T Consensus 253 ~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e----~~~e-sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c--- 324 (399)
T KOG0296|consen 253 SEGVACGVNNGSGKVVNCNNGTVPELKPSQE----ELDE-SVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC--- 324 (399)
T ss_pred CCccEEEEccccceEEEecCCCCccccccch----hhhh-hhhhcccccccchhhcccccceEEEEecccchhheec---
Confidence 43 577777777777666552 121 1000 0000 000011111 1111 22234455553111000000
Q ss_pred CCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 001935 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (994)
Q Consensus 282 ~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~ 361 (994)
+...|+++ . - |.. .-.+.++..+|+|++||..+|++
T Consensus 325 ----------------------~he~~V~~----l-------------~----w~~-t~~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 325 ----------------------EHEDGVTK----L-------------K----WLN-TDYLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred ----------------------cCCCceEE----E-------------E----EcC-cchheeeccCceEEeeeccccce
Confidence 00001100 0 0 000 00233567899999999999999
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeC
Q 001935 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (994)
Q Consensus 362 i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (994)
+.+..+|+.+|.+++++|++++++|+|.++ +.+||++
T Consensus 361 ~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~-~a~VF~v 397 (399)
T KOG0296|consen 361 KFTYTGHQMGILDFALSPQKRLVVTVSDDN-TALVFEV 397 (399)
T ss_pred EEEEecCchheeEEEEcCCCcEEEEecCCC-eEEEEec
Confidence 999999999999999999999999999954 5899987
No 112
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.26 E-value=1.4e-10 Score=131.53 Aligned_cols=109 Identities=23% Similarity=0.368 Sum_probs=84.7
Q ss_pred ccCCCCeEEEEECCCCcEEEEe-ccCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceE
Q 001935 344 DMDNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~~i~~~-~aHtspIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~ 421 (994)
.++.+|.|.+||......+.++ .+|..|...+||+|... +|||.+- +..|.+||+... +.
T Consensus 182 ~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~-Dkki~~yD~~s~-----------------~s 243 (673)
T KOG4378|consen 182 IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY-DKKINIYDIRSQ-----------------AS 243 (673)
T ss_pred eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc-cceEEEeecccc-----------------cc
Confidence 4678999999999988776544 68999999999999875 6777777 566999998421 11
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccc-cccc
Q 001935 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF-QTLS 473 (994)
Q Consensus 422 l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~-~~H~ 473 (994)
.-.|. -.++...++|+++|.+|++|+.+|.|.-|++.-.+.++.. ..|.
T Consensus 244 ~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~ 293 (673)
T KOG4378|consen 244 TDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD 293 (673)
T ss_pred cceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc
Confidence 11111 1246789999999999999999999999999887777654 4564
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.26 E-value=2.1e-10 Score=129.65 Aligned_cols=219 Identities=17% Similarity=0.216 Sum_probs=151.1
Q ss_pred CCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCC
Q 001935 72 SVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR 150 (994)
Q Consensus 72 ~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~ 150 (994)
++++++|++|..+. |+||+++ +.+-.+.+.+|-+.|..+.|--.+ + .| .+.+
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~-t~ehv~~~~ghr~~V~~L~fr~gt-----------~-~l-ys~s------------- 263 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCD-TLEHVKVFKGHRGAVSSLAFRKGT-----------S-EL-YSAS------------- 263 (479)
T ss_pred cCCCcEEEecCCCceEEEecCc-ccchhhcccccccceeeeeeecCc-----------c-ce-eeee-------------
Confidence 35788999987765 8999996 466677889999999999976332 1 12 2211
Q ss_pred CCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE-eCCCcEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEE
Q 001935 151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL-RFRSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFS 226 (994)
Q Consensus 151 ~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL-~f~S~V~sV~~S~--~iLAVg-l~~~I~IwDa~Tle~l~t 226 (994)
.+++|++|++..-.++.++ .+++.|.+|.... +.+.|+ -|.++++|++..-.. ..
T Consensus 264 --------------------~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-li 322 (479)
T KOG0299|consen 264 --------------------ADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LI 322 (479)
T ss_pred --------------------cCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce-ee
Confidence 3589999999999988887 5678999998765 456666 567899999832111 11
Q ss_pred EeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhh
Q 001935 227 VLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (994)
Q Consensus 227 L~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la 306 (994)
...+. + ++..+||-.+.
T Consensus 323 frg~~-------~-------------sidcv~~In~~------------------------------------------- 339 (479)
T KOG0299|consen 323 FRGGE-------G-------------SIDCVAFINDE------------------------------------------- 339 (479)
T ss_pred eeCCC-------C-------------CeeeEEEeccc-------------------------------------------
Confidence 11110 0 00111221110
Q ss_pred cccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec-cCC-----------CCeEE
Q 001935 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHT-----------SPISA 374 (994)
Q Consensus 307 ~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~-aHt-----------spIsa 374 (994)
.+++++.+|.|.+|++..++++.+.+ ||. ..|++
T Consensus 340 ----------------------------------HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wits 385 (479)
T KOG0299|consen 340 ----------------------------------HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITS 385 (479)
T ss_pred ----------------------------------ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceee
Confidence 12356789999999999888775554 441 26899
Q ss_pred EEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 001935 375 LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (994)
Q Consensus 375 LaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~d 452 (994)
|+.-|...|+||+|.+|. +|+|.+.+.. .....++.+. -...|++|+|+++|++|.+|-..
T Consensus 386 la~i~~sdL~asGS~~G~-vrLW~i~~g~-------------r~i~~l~~ls---~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 386 LAVIPGSDLLASGSWSGC-VRLWKIEDGL-------------RAINLLYSLS---LVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred eEecccCceEEecCCCCc-eEEEEecCCc-------------cccceeeecc---cccEEEEEEEccCCCEEEEeccc
Confidence 999999999999999886 9999997631 1224667764 23469999999999988888444
No 114
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.26 E-value=1.1e-10 Score=130.46 Aligned_cols=240 Identities=13% Similarity=0.170 Sum_probs=153.5
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeee-ccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSK-RDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 51 ~~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~ells~-hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
..++|...|.+..|-- .++.+|+.|.+.-+.+||++ +|+++.++.. +.-.|.+.++.|++ |+
T Consensus 264 tlvgh~~~V~yi~wSP------DdryLlaCg~~e~~~lwDv~-tgd~~~~y~~~~~~S~~sc~W~pDg--------~~-- 326 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSP------DDRYLLACGFDEVLSLWDVD-TGDLRHLYPSGLGFSVSSCAWCPDG--------FR-- 326 (519)
T ss_pred eeecccCceEEEEECC------CCCeEEecCchHheeeccCC-cchhhhhcccCcCCCcceeEEccCC--------ce--
Confidence 3467788888888741 24667777777789999995 5767666654 35578899999987 33
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CcEEEEEecC---Ce
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP---RI 204 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~--S~V~sV~~S~---~i 204 (994)
+|+|. .++++.-||+.... +...+.- ..|++++... .+
T Consensus 327 -----~V~Gs-------------------------------~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~v 369 (519)
T KOG0293|consen 327 -----FVTGS-------------------------------PDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYV 369 (519)
T ss_pred -----eEecC-------------------------------CCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEE
Confidence 22321 24789999996443 3333332 4688888876 37
Q ss_pred EEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cE--EEEccCCeeeccCCccCCCcCCCC
Q 001935 205 VAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RW--LAYASNTLLLSNSGRLSPQNLTPS 280 (994)
Q Consensus 205 LAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--Rw--LAyas~~~~iwd~G~~s~qsltp~ 280 (994)
|+|+.+..|++|+..+...+..+.++.. ...+.++. ++ +......+.+||...
T Consensus 370 l~v~~d~~i~l~~~e~~~dr~lise~~~--------------its~~iS~d~k~~LvnL~~qei~LWDl~e--------- 426 (519)
T KOG0293|consen 370 LLVTVDKKIRLYNREARVDRGLISEEQP--------------ITSFSISKDGKLALVNLQDQEIHLWDLEE--------- 426 (519)
T ss_pred EEEecccceeeechhhhhhhccccccCc--------------eeEEEEcCCCcEEEEEcccCeeEEeecch---------
Confidence 7788888999999887665433333211 12233433 22 233445677887310
Q ss_pred CCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 001935 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (994)
Q Consensus 281 ~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~ 360 (994)
..++.+| .|. +.+.|.-. +.-+......+++|+.|+.|.||+..+++
T Consensus 427 ----------~~lv~kY---------~Gh--kq~~fiIr------------SCFgg~~~~fiaSGSED~kvyIWhr~sgk 473 (519)
T KOG0293|consen 427 ----------NKLVRKY---------FGH--KQGHFIIR------------SCFGGGNDKFIASGSEDSKVYIWHRISGK 473 (519)
T ss_pred ----------hhHHHHh---------hcc--cccceEEE------------eccCCCCcceEEecCCCceEEEEEccCCc
Confidence 0111111 011 11111100 00000111124688999999999999999
Q ss_pred EEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCCC
Q 001935 361 IISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 361 ~i~~~~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p 401 (994)
.++.+.+|...|++++++|.. .++|+||.||+ ||||-..+
T Consensus 474 ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt-IRIWg~~~ 514 (519)
T KOG0293|consen 474 LLAVLSGHSKTVNCVSWNPADPEMFASASDDGT-IRIWGPSD 514 (519)
T ss_pred eeEeecCCcceeeEEecCCCCHHHhhccCCCCe-EEEecCCc
Confidence 999999999999999999977 58999999877 99998753
No 115
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.26 E-value=1.1e-10 Score=127.01 Aligned_cols=255 Identities=15% Similarity=0.177 Sum_probs=179.3
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCcE-EEEEccCCCcceEeee--------eccCCEEEEEEecCCCCCCCCCC
Q 001935 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGF-QVLDVEDASNFNELVS--------KRDGPVSFLQMQPFPVKDDGCEG 125 (994)
Q Consensus 55 ~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~-qVWDv~~~g~v~ells--------~hdGpV~~v~~lP~p~~s~~~D~ 125 (994)
.|..+..|.| +|++++|+.|.-+|| .|||.. +|++++-|. -+|.+|.|+.|+.+.
T Consensus 212 ~KSh~EcA~F-------SPDgqyLvsgSvDGFiEVWny~-~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-------- 275 (508)
T KOG0275|consen 212 QKSHVECARF-------SPDGQYLVSGSVDGFIEVWNYT-TGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-------- 275 (508)
T ss_pred cccchhheee-------CCCCceEeeccccceeeeehhc-cchhhhhhhhhhhcceeecccceEEEeecccH--------
Confidence 3444555555 468999999999995 999994 677776554 246788888877432
Q ss_pred ccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe--CCCcEEEEEecC-
Q 001935 126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR--FRSSVCMVRCSP- 202 (994)
Q Consensus 126 F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~--f~S~V~sV~~S~- 202 (994)
-+||. | + -+++|++|-+++|+|++.+. +...|.+++|++
T Consensus 276 -----EMlAs--G---------------------s----------qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD 317 (508)
T KOG0275|consen 276 -----EMLAS--G---------------------S----------QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD 317 (508)
T ss_pred -----HHhhc--c---------------------C----------cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC
Confidence 25552 1 0 14789999999999998885 335899999987
Q ss_pred --CeEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCC
Q 001935 203 --RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (994)
Q Consensus 203 --~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~ 280 (994)
++|..+.+..++|+-+..++++..+.+|.+- +| .. .
T Consensus 318 ~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy---------vn----~a-------~---------------------- 355 (508)
T KOG0275|consen 318 NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY---------VN----EA-------T---------------------- 355 (508)
T ss_pred cchhhcccccceEEEeccccchhHHHhcCcccc---------cc----ce-------E----------------------
Confidence 5788888999999999999988877776541 00 00 0
Q ss_pred CCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 001935 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (994)
Q Consensus 281 ~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~ 360 (994)
|++++. .+.+++.||+|+||+..+.+
T Consensus 356 -----ft~dG~-------------------------------------------------~iisaSsDgtvkvW~~Ktte 381 (508)
T KOG0275|consen 356 -----FTDDGH-------------------------------------------------HIISASSDGTVKVWHGKTTE 381 (508)
T ss_pred -----EcCCCC-------------------------------------------------eEEEecCCccEEEecCcchh
Confidence 011110 12356789999999999999
Q ss_pred EEEEecc--CCCCeEEEEECCCCC-EEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-ccEEE
Q 001935 361 IISQFKA--HTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-ATIQD 436 (994)
Q Consensus 361 ~i~~~~a--HtspIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~-a~I~s 436 (994)
++.+|+. ..-+|+.+-.=|... .++.+-. ..++.|.++. | +.+..|.-|... ....+
T Consensus 382 C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr-sntv~imn~q--------G----------QvVrsfsSGkREgGdFi~ 442 (508)
T KOG0275|consen 382 CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR-SNTVYIMNMQ--------G----------QVVRSFSSGKREGGDFIN 442 (508)
T ss_pred hhhhccCCCCcccceeEEEcCCCCceEEEEcC-CCeEEEEecc--------c----------eEEeeeccCCccCCceEE
Confidence 9999985 455788877766654 4554544 4557777764 4 344555444322 23556
Q ss_pred EEEccCCCEEEEEeCCCeEEEEecCCCCCCcccccccCCCCC
Q 001935 437 ICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGD 478 (994)
Q Consensus 437 IaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~s~~~~ 478 (994)
.+.||-|.|+.+.+.|+.+.-|.+...+-+.++.-|...+.+
T Consensus 443 ~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIG 484 (508)
T KOG0275|consen 443 AILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIG 484 (508)
T ss_pred EEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccc
Confidence 789999999999999999999999887777776666443333
No 116
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=8.8e-12 Score=146.16 Aligned_cols=121 Identities=17% Similarity=0.300 Sum_probs=100.2
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
+.+..+|+|++||++..+.+.+|.+|..+|..|.|+|-|.+.|++|. ++.+.+||+... | +.
T Consensus 86 aagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gSt-dtd~~iwD~Rk~------G-----------c~ 147 (825)
T KOG0267|consen 86 AAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGST-DTDLKIWDIRKK------G-----------CS 147 (825)
T ss_pred cccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccc-cccceehhhhcc------C-----------ce
Confidence 35678999999999999999999999999999999999999999999 456999999642 3 55
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcccccccCCCCCCccCC
Q 001935 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 483 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~s~~~~~~~~p 483 (994)
+.+ +| |...|..+.|+|||+|++.+++|.+++||++...+-...|.+|..++...-.+|
T Consensus 148 ~~~-~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp 206 (825)
T KOG0267|consen 148 HTY-KS-HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP 206 (825)
T ss_pred eee-cC-CcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc
Confidence 554 45 556799999999999999999999999999987777777887865443333343
No 117
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.24 E-value=3.4e-09 Score=120.96 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=76.2
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 001935 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~ 423 (994)
-+...|.-.|.|.++...+ +++--..||++++|+|+|.+||.||.|+. |.||.+..+ | +...
T Consensus 423 ~Gt~~G~w~V~d~e~~~lv-~~~~d~~~ls~v~ysp~G~~lAvgs~d~~-iyiy~Vs~~------g----------~~y~ 484 (626)
T KOG2106|consen 423 VGTATGRWFVLDTETQDLV-TIHTDNEQLSVVRYSPDGAFLAVGSHDNH-IYIYRVSAN------G----------RKYS 484 (626)
T ss_pred EeeccceEEEEecccceeE-EEEecCCceEEEEEcCCCCEEEEecCCCe-EEEEEECCC------C----------cEEE
Confidence 4567788899999985444 45444899999999999999999999765 999999642 3 2333
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEE
Q 001935 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458 (994)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw 458 (994)
++. -.+.+.|..+.||+|+++|.+-|.|=.+-.|
T Consensus 485 r~~-k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 485 RVG-KCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred Eee-eecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 332 2233789999999999999999999999999
No 118
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.24 E-value=2.4e-10 Score=128.75 Aligned_cols=179 Identities=17% Similarity=0.188 Sum_probs=122.9
Q ss_pred CCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC---CeEEEE-eCCeEEEEECCCCceeEEEeecCCccccCCCcccccc
Q 001935 171 SPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (994)
Q Consensus 171 sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~---~iLAVg-l~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv 245 (994)
.++||++||+.+|++..++.++ ..|..+.|++ .+|+.| .++++.++|.+...+.
T Consensus 264 aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s--------------------- 322 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS--------------------- 322 (463)
T ss_pred CCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc---------------------
Confidence 3689999999999999999965 5899999987 466664 4778999998752210
Q ss_pred CccceEEcccEEEEccC-CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCC
Q 001935 246 GYGPMAVGPRWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (994)
Q Consensus 246 ~~gplAlgpRwLAyas~-~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~ 324 (994)
.. .| -+-+. ....|+. +
T Consensus 323 ---~~----~w-k~~g~VEkv~w~~----------------~-------------------------------------- 340 (463)
T KOG0270|consen 323 ---GK----EW-KFDGEVEKVAWDP----------------H-------------------------------------- 340 (463)
T ss_pred ---Cc----eE-EeccceEEEEecC----------------C--------------------------------------
Confidence 00 01 11111 1112320 0
Q ss_pred CCCCccCCCccccccccccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEeCCCC
Q 001935 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPS 402 (994)
Q Consensus 325 s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~-~~i~~~~aHtspIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~ 402 (994)
++. .+..+..||+|+-+|+.+. +++.+++||..+|+.|++++.-. +|+|+|.++ ++++|++...
T Consensus 341 --se~-----------~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~-~Vklw~~~~~ 406 (463)
T KOG0270|consen 341 --SEN-----------SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK-VVKLWKFDVD 406 (463)
T ss_pred --Cce-----------eEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccc-eEEEEeecCC
Confidence 000 0112357999999999875 89999999999999999998764 788999854 5999998532
Q ss_pred cccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEecCCC
Q 001935 403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 403 ~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg-~~LAsgS~dGTVhIw~I~~~ 463 (994)
. + .....+-+++.| ..|.++.|+- -+||.|+..+-++||++...
T Consensus 407 ~-----~------~~v~~~~~~~~r------l~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 407 S-----P------KSVKEHSFKLGR------LHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred C-----C------cccccccccccc------eeecccCCCcceEEEecCccceEEEeecccC
Confidence 0 0 112234444433 5778888865 57888999999999998764
No 119
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.24 E-value=3.2e-11 Score=134.57 Aligned_cols=123 Identities=17% Similarity=0.277 Sum_probs=102.2
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceE
Q 001935 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~ 421 (994)
+++++.||+|+|||+...+.-..|++|.-.|.++.+.|.-.+||++|.| +.|++||.+. | .+
T Consensus 195 F~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskD-nlVKlWDprS-------g----------~c 256 (464)
T KOG0284|consen 195 FLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKD-NLVKLWDPRS-------G----------SC 256 (464)
T ss_pred eEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCC-ceeEeecCCC-------c----------ch
Confidence 4578899999999999998888899999999999999999999999995 5899999753 4 47
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcccccccCCCCCCccCCc
Q 001935 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV 484 (994)
Q Consensus 422 l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~s~~~~~~~~p~ 484 (994)
|..|+ ++ ...|..+.|+|++.||+++|.|.+++||+|...+.--.++.|...+.....+|+
T Consensus 257 l~tlh-~H-KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~ 317 (464)
T KOG0284|consen 257 LATLH-GH-KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPL 317 (464)
T ss_pred hhhhh-hc-cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccc
Confidence 77775 33 346999999999999999999999999999977776777888654433334443
No 120
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=4.1e-11 Score=146.54 Aligned_cols=246 Identities=19% Similarity=0.241 Sum_probs=166.7
Q ss_pred EEeeccCCCCCCC--eEEEEEecCc-EEEEEccC--CCcceEe---eeeccCCEEEEEEecCCCCCCCCCCccccCcEEE
Q 001935 63 GFDRLEYGPSVFK--QVLLLGYQNG-FQVLDVED--ASNFNEL---VSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLL 134 (994)
Q Consensus 63 ~Fd~le~~~~~~~--~vL~lGy~~G-~qVWDv~~--~g~v~el---ls~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLA 134 (994)
+|++|......++ -+|+.|.++| |-+||... .++..++ .+.|.|+|+.+.|.|. . +.|||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~----------q--~nlLA 133 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF----------Q--GNLLA 133 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc----------C--Cceee
Confidence 4666655332222 3788888887 99999865 2433444 4578899999998753 2 23777
Q ss_pred EEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE---eCCCcEEEEEecC---CeEEEE
Q 001935 135 VVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL---RFRSSVCMVRCSP---RIVAVG 208 (994)
Q Consensus 135 vVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL---~f~S~V~sV~~S~---~iLAVg 208 (994)
. |+ .++.|.|||+.+-+.--++ .+.+.|..+++|+ ++||.+
T Consensus 134 S--Ga-------------------------------~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~ 180 (1049)
T KOG0307|consen 134 S--GA-------------------------------DDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASG 180 (1049)
T ss_pred c--cC-------------------------------CCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhcc
Confidence 3 21 1368999999875543333 3557899999998 588887
Q ss_pred eCC-eEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcC
Q 001935 209 LAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (994)
Q Consensus 209 l~~-~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stS 287 (994)
... ++.|||++..+.+..+..++.. +.++ -|+ |+
T Consensus 181 s~sg~~~iWDlr~~~pii~ls~~~~~----------------~~~S--~l~--------Wh------------------- 215 (1049)
T KOG0307|consen 181 SPSGRAVIWDLRKKKPIIKLSDTPGR----------------MHCS--VLA--------WH------------------- 215 (1049)
T ss_pred CCCCCceeccccCCCcccccccCCCc----------------ccee--eee--------eC-------------------
Confidence 765 8999999977655544433220 1111 111 21
Q ss_pred CCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEEEEec
Q 001935 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFK 366 (994)
Q Consensus 288 p~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~-~~i~~~~ 366 (994)
|++.+-++ .. ..-+..-.|.+||+..- ..+..++
T Consensus 216 P~~aTql~----------------------------------~A-----------s~dd~~PviqlWDlR~assP~k~~~ 250 (1049)
T KOG0307|consen 216 PDHATQLL----------------------------------VA-----------SGDDSAPVIQLWDLRFASSPLKILE 250 (1049)
T ss_pred CCCceeee----------------------------------ee-----------cCCCCCceeEeecccccCCchhhhc
Confidence 11111000 00 01134457999998754 3667788
Q ss_pred cCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-
Q 001935 367 AHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ- 444 (994)
Q Consensus 367 aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~- 444 (994)
.|...|.+|.+.+.+ +||+|++.|++ |.+|+... | ..|++|-+ ...++.++.|+|-.-
T Consensus 251 ~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~t-------g----------Evl~~~p~--~~nW~fdv~w~pr~P~ 310 (1049)
T KOG0307|consen 251 GHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNT-------G----------EVLGELPA--QGNWCFDVQWCPRNPS 310 (1049)
T ss_pred ccccceeeeccCCCCchhhhcccCCCC-eeEecCCC-------c----------eEeeecCC--CCcceeeeeecCCCcc
Confidence 999999999999988 88999998777 88999753 3 57888854 345899999999654
Q ss_pred EEEEEeCCCeEEEEecCCC
Q 001935 445 WIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 445 ~LAsgS~dGTVhIw~I~~~ 463 (994)
.+|++|.+|+|-||.|...
T Consensus 311 ~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 311 VMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred hhhhheeccceeeeeeecC
Confidence 8999999999999998653
No 121
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.24 E-value=3.1e-10 Score=123.94 Aligned_cols=122 Identities=18% Similarity=0.209 Sum_probs=93.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
++...+-||.-..+..+..+-+|.+.|+-|+|-+||..|.+++.++-.|-+||+... + ..+|.|
T Consensus 227 sY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~------~----------~pv~~L 290 (406)
T KOG2919|consen 227 SYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS------R----------DPVYAL 290 (406)
T ss_pred cccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc------c----------chhhhh
Confidence 344456667667778888888999999999999999999999999889999999642 2 578888
Q ss_pred eccc--ccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccc-ccccCCCCCCccCCc
Q 001935 426 HRGI--TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF-QTLSSQGGDPYLFPV 484 (994)
Q Consensus 426 ~RG~--t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~-~~H~s~~~~~~~~p~ 484 (994)
.|.. |+-.|+ ....|+|+|||+|+.||.|++|++..+|.++.. ..|..-+.+..+.|+
T Consensus 291 ~rhv~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 291 ERHVGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPI 351 (406)
T ss_pred hhhccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcc
Confidence 7644 333444 344589999999999999999999998875533 444444555566665
No 122
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.23 E-value=2.9e-09 Score=115.71 Aligned_cols=251 Identities=16% Similarity=0.188 Sum_probs=162.9
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcce-EeeeeccCCEEEEEEecCCCCCCCCCCccccCcE
Q 001935 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFN-ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (994)
Q Consensus 55 ~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~-ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpL 132 (994)
..|.|.-..|-. ....+|++|..+| +|+|+++..|... +....|++||-++.+.-++ ..
T Consensus 26 P~DsIS~l~FSP------~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-------------sk 86 (347)
T KOG0647|consen 26 PEDSISALAFSP------QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-------------SK 86 (347)
T ss_pred cccchheeEecc------ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-------------ce
Confidence 457788888864 1234666676655 9999998764332 4455688999999988554 23
Q ss_pred EEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC----CeEEEE
Q 001935 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP----RIVAVG 208 (994)
Q Consensus 133 LAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~----~iLAVg 208 (994)
+++-+ .++.+++|||.+++....--+..+|..++|=+ ..|+.|
T Consensus 87 Vf~g~---------------------------------~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG 133 (347)
T KOG0647|consen 87 VFSGG---------------------------------CDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTG 133 (347)
T ss_pred EEeec---------------------------------cCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEec
Confidence 44311 24689999999998766666778999998855 356765
Q ss_pred e-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcC
Q 001935 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (994)
Q Consensus 209 l-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stS 287 (994)
. |++|+.||.+....+.++.- |+ |.
T Consensus 134 SWDKTlKfWD~R~~~pv~t~~L---Pe--------------------Rv------------------------------- 159 (347)
T KOG0647|consen 134 SWDKTLKFWDTRSSNPVATLQL---PE--------------------RV------------------------------- 159 (347)
T ss_pred ccccceeecccCCCCeeeeeec---cc--------------------ee-------------------------------
Confidence 4 77899999987666555431 10 00
Q ss_pred CCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 001935 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (994)
Q Consensus 288 p~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a 367 (994)
|++|....++ +-+..+..|.||.+.++. ..++.
T Consensus 160 ---------Ya~Dv~~pm~------------------------------------vVata~r~i~vynL~n~~--te~k~ 192 (347)
T KOG0647|consen 160 ---------YAADVLYPMA------------------------------------VVATAERHIAVYNLENPP--TEFKR 192 (347)
T ss_pred ---------eehhccCcee------------------------------------EEEecCCcEEEEEcCCCc--chhhh
Confidence 1111110000 012235567788886653 34555
Q ss_pred CCCC----eEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc----cc-cccEEEEE
Q 001935 368 HTSP----ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG----IT-SATIQDIC 438 (994)
Q Consensus 368 Htsp----IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG----~t-~a~I~sIa 438 (994)
|.+| +.+++.-+|....|-||..|+ +-|..+.+. ..+..-.++.+|- .. -..|.+|+
T Consensus 193 ~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~-------------~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 193 IESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDP-------------NPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred hcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCC-------------CccCceeEEEeccCCCCCCceEEecceE
Confidence 5554 567888788877788999998 678888541 0011245666662 11 12478999
Q ss_pred EccCCCEEEEEeCCCeEEEEecCCCCCCcccccc
Q 001935 439 FSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (994)
Q Consensus 439 FSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H 472 (994)
|.|.-..|++++.|||.-.|+-.......+..+|
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~ 292 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH 292 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcC
Confidence 9999999999999999999997654443333444
No 123
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.23 E-value=9e-09 Score=114.36 Aligned_cols=104 Identities=12% Similarity=0.137 Sum_probs=69.9
Q ss_pred CCCCeEEEEECCC--C--cEEEEeccC------CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCcccc
Q 001935 346 DNAGIVVVKDFVT--R--AIISQFKAH------TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (994)
Q Consensus 346 s~dG~V~VwDl~s--~--~~i~~~~aH------tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~ 415 (994)
..++.|.+||+.. + +.+..+..+ ......+.|+|||++|+++......|.||++... +.
T Consensus 194 ~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~------~~----- 262 (330)
T PRK11028 194 ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED------GS----- 262 (330)
T ss_pred cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC------CC-----
Confidence 4589999999973 2 234444322 1123469999999999998776678999998542 10
Q ss_pred CCcceEEEEEecccccccEEEEEEccCCCEEEEEeC-CCeEEEEecCCCCC
Q 001935 416 NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGG 465 (994)
Q Consensus 416 ~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~-dGTVhIw~I~~~gg 465 (994)
....+.....| ...+.++|+|||++|+++.. +++|.||+++...+
T Consensus 263 --~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g 308 (330)
T PRK11028 263 --VLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETG 308 (330)
T ss_pred --eEEEeEEEecc---ccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCC
Confidence 01112222222 23467999999999999886 89999999976544
No 124
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.22 E-value=3.6e-10 Score=122.72 Aligned_cols=200 Identities=20% Similarity=0.293 Sum_probs=133.9
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC---CC--------------cceEeeeeccCCEEEEEEecC
Q 001935 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED---AS--------------NFNELVSKRDGPVSFLQMQPF 116 (994)
Q Consensus 55 ~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~---~g--------------~v~ells~hdGpV~~v~~lP~ 116 (994)
||..+..+.|. +++.++++|..+. |+|.|++. .. -+..+|=.|-.+|+.+.|-|.
T Consensus 111 HK~~cR~aafs-------~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 111 HKSPCRAAAFS-------PDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred cccceeeeeeC-------CCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 66667777775 4788999999875 99999971 01 122333345566777776653
Q ss_pred CCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEE---EEEeCCC
Q 001935 117 PVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE---HVLRFRS 193 (994)
Q Consensus 117 p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V---~tL~f~S 193 (994)
..+|+. +. -+++|+|+|+.+-..- ++++-..
T Consensus 184 -------------e~ILiS--~s-------------------------------rD~tvKlFDfsK~saKrA~K~~qd~~ 217 (430)
T KOG0640|consen 184 -------------ETILIS--GS-------------------------------RDNTVKLFDFSKTSAKRAFKVFQDTE 217 (430)
T ss_pred -------------hheEEe--cc-------------------------------CCCeEEEEecccHHHHHHHHHhhccc
Confidence 235552 10 1479999999754432 3334446
Q ss_pred cEEEEEecC--CeEEEEeCC-eEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCC
Q 001935 194 SVCMVRCSP--RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSG 270 (994)
Q Consensus 194 ~V~sV~~S~--~iLAVgl~~-~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G 270 (994)
+|++|.|.| .+|+||.+. .+++||+.|.++...- .|.. |... ++ .-+-|+++
T Consensus 218 ~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa--nPd~----qht~---------ai--~~V~Ys~t-------- 272 (430)
T KOG0640|consen 218 PVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA--NPDD----QHTG---------AI--TQVRYSST-------- 272 (430)
T ss_pred eeeeEeecCCCceEEEecCCCceeEEeccceeEeeec--Cccc----cccc---------ce--eEEEecCC--------
Confidence 899999988 799999886 6999999987764221 1110 0000 00 01111110
Q ss_pred ccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCe
Q 001935 271 RLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI 350 (994)
Q Consensus 271 ~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~ 350 (994)
+. ..++++.||.
T Consensus 273 --------------------~~------------------------------------------------lYvTaSkDG~ 284 (430)
T KOG0640|consen 273 --------------------GS------------------------------------------------LYVTASKDGA 284 (430)
T ss_pred --------------------cc------------------------------------------------EEEEeccCCc
Confidence 00 1135689999
Q ss_pred EEEEECCCCcEEEEec-cCC-CCeEEEEECCCCCEEEEEEcCCCeEEEEeCCC
Q 001935 351 VVVKDFVTRAIISQFK-AHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 351 V~VwDl~s~~~i~~~~-aHt-spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (994)
|+|||-.+++++.+|. ||. +.|.+..|..+|+++.+.+. +.++++|.+..
T Consensus 285 IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~-DS~vkLWEi~t 336 (430)
T KOG0640|consen 285 IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK-DSTVKLWEIST 336 (430)
T ss_pred EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC-cceeeeeeecC
Confidence 9999999999998885 786 57999999999999999888 56799999964
No 125
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=1.4e-11 Score=143.57 Aligned_cols=316 Identities=24% Similarity=0.314 Sum_probs=189.1
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCC
Q 001935 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (994)
Q Consensus 74 ~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~ 152 (994)
.+-.+++||=.| .++|-..-.+.+.+.+.++.|+|+...++++. |+.++
T Consensus 251 kGy~~isglc~g~~~~g~gpglgg~~~~~vGrvg~vsaesV~g~~--------------~vivk---------------- 300 (788)
T KOG2109|consen 251 KGYVLISGLCRGSYQIGTGPGLGGFEEVLVGRVGPVSAESVLGNN--------------LVIVK---------------- 300 (788)
T ss_pred chHHHHHHHhhcccCCCCCCCCCCcCceeccccccccceeecccc--------------eEEee----------------
Confidence 356788888777 79998877788888899999999999888653 32221
Q ss_pred ccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEeCCeEEEEECCCCceeEEEee-cC
Q 001935 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT-YP 231 (994)
Q Consensus 153 ~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~~iLAVgl~~~I~IwDa~Tle~l~tL~t-~p 231 (994)
.|=+++....++.++++..+++++-+.-+|++++-..+-|++++.|+.+-++.. ++
T Consensus 301 -----------------------df~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~q 357 (788)
T KOG2109|consen 301 -----------------------DFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQ 357 (788)
T ss_pred -----------------------cccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEecccccccccccc
Confidence 122333445556666666677777777788888777777777777776655543 22
Q ss_pred CccccCCCccccccCccceEEcccEEEEccC-CeeeccC-CccC--CCcCCCC-CC----CCCcC---CCCCceEEEeeh
Q 001935 232 VPQLAGQGAVGINVGYGPMAVGPRWLAYASN-TLLLSNS-GRLS--PQNLTPS-GV----SPSTS---PGGSSLVARYAM 299 (994)
Q Consensus 232 ~p~~~~~g~~~vnv~~gplAlgpRwLAyas~-~~~iwd~-G~~s--~qsltp~-~~----S~stS---p~~gsLVa~~A~ 299 (994)
.+ ..++.++.++||++..- ...-|.. |.+. +-.+.+. .. .++.. .+.+-++
T Consensus 358 s~------------~~s~ra~t~aviqdicfs~~s~~r~~gsc~Ge~P~ls~t~~lp~~A~~Sl~~gl~s~g~~a----- 420 (788)
T KOG2109|consen 358 SL------------VVSPRANTAAVIQDICFSEVSTIRTAGSCEGEPPALSLTCQLPAYADTSLDLGLQSSGGLA----- 420 (788)
T ss_pred cc------------ccchhcchHHHHHHHhhhhhcceEeecccCCCCcccccccccchhhchhhhccccccCccc-----
Confidence 21 12356666655554321 1111111 1110 0011100 00 00000 0001111
Q ss_pred hhhhhhhcccceeeccccccccCCCCCCCccCCCcccccc-cccc-ccCCCCeEEEEECC-----CC-cEEEEeccCCCC
Q 001935 300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGR-HAGA-DMDNAGIVVVKDFV-----TR-AIISQFKAHTSP 371 (994)
Q Consensus 300 dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~-~~~a-s~s~dG~V~VwDl~-----s~-~~i~~~~aHtsp 371 (994)
+.|+.-+-.+|+...+...+....+.-++.+..+ +.+. .-...|.+.+.+.. .+ .+++++.+|..+
T Consensus 421 ------a~gla~~sag~~a~s~~asSv~s~s~~pd~ks~gv~~gsv~k~~q~~~~~l~~llv~~psGd~vvqh~vahs~~ 494 (788)
T KOG2109|consen 421 ------AEGLATSSAGYTAHSYTASSVFSRSVKPDSKSVGVGSGSVTKANQGVITVLNLLLVGEPSGDGVVQHYVAHSDP 494 (788)
T ss_pred ------ceeeeeccccccccccccceeeccccccchhhccceeeeccccCccchhhhhheeeecCCCCceeEEEeeccCc
Confidence 1111111122333222111110001111111111 1111 11122334433331 23 577889999999
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 001935 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS 451 (994)
Q Consensus 372 IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~ 451 (994)
+..+.|+|+++++.||+..++.+++|.++|....+. .....|+|++.||.|.++|..++|+-|++|+|....
T Consensus 495 gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~wss--------laav~hly~l~rG~TsaKv~~~afs~dsrw~A~~t~ 566 (788)
T KOG2109|consen 495 GVYIEFSPDQRLVLSADANENEFNIFLVMPHATWSS--------LAAVQHLYKLNRGSTSAKVVSTAFSEDSRWLAITTN 566 (788)
T ss_pred cceeeecccccceecccccccccceEEeecccccHH--------HhhhhhhhhccCCCccceeeeeEeecchhhhhhhhc
Confidence 999999999999999999999889999998632111 224578999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCCccccccc
Q 001935 452 KGTCHVFVLSPFGGDSGFQTLS 473 (994)
Q Consensus 452 dGTVhIw~I~~~gg~~~~~~H~ 473 (994)
.+|-|||++.+|++....++|.
T Consensus 567 ~~TthVfk~hpYgg~aeqrth~ 588 (788)
T KOG2109|consen 567 HATTHVFKVHPYGGKAEQRTHG 588 (788)
T ss_pred CCceeeeeeccccccccceecC
Confidence 9999999999999999999995
No 126
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.20 E-value=4.6e-10 Score=122.38 Aligned_cols=107 Identities=12% Similarity=0.243 Sum_probs=85.0
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
.+++.|-.|.|||+. |+.+.++......-...+.||+|++||+++-. -.++||.+-- ...++- ..+..+
T Consensus 203 msas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFT-pDVkVwE~~f--~kdG~f-------qev~rv 271 (420)
T KOG2096|consen 203 MSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT-PDVKVWEPIF--TKDGTF-------QEVKRV 271 (420)
T ss_pred EEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCC-CCceEEEEEe--ccCcch-------hhhhhh
Confidence 466788899999999 88999999888888889999999999999874 3489999742 222111 122456
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
+.| .|+. +.|..+|||++++.+++.|.||+.+||+++-
T Consensus 272 f~L-kGH~-saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 272 FSL-KGHQ-SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred hee-ccch-hheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 777 4654 5699999999999999999999999999864
No 127
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=1.1e-08 Score=107.50 Aligned_cols=100 Identities=21% Similarity=0.302 Sum_probs=82.9
Q ss_pred ccccCCCCeEEEEECCCCcEEEEecc--C-----CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccc
Q 001935 342 GADMDNAGIVVVKDFVTRAIISQFKA--H-----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~~~i~~~~a--H-----tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~ 414 (994)
++++++|.+|+.||+.-..++.++.. | .+.|.+++.+|+|++||++-. +....+|||.- |
T Consensus 197 ~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-dssc~lydirg-------~----- 263 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-DSSCMLYDIRG-------G----- 263 (350)
T ss_pred EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-CCceEEEEeeC-------C-----
Confidence 34678999999999998887776643 2 367999999999999999988 45589999962 2
Q ss_pred cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 415 ~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
+.++.|+- +.+.|.++.|||...||.++|-|..|++=++.
T Consensus 264 -----r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 264 -----RMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred -----ceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 56777753 56889999999999999999999999987763
No 128
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.19 E-value=2.3e-09 Score=125.91 Aligned_cols=100 Identities=13% Similarity=0.282 Sum_probs=80.2
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
-..|++|...+=..+..|..|.-.|+.|+|||||++|+++|. ++++.+|..+.... . ..-|....
T Consensus 551 hAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR-DRt~sl~~~~~~~~----~----------e~~fa~~k 615 (764)
T KOG1063|consen 551 HAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR-DRTVSLYEVQEDIK----D----------EFRFACLK 615 (764)
T ss_pred ceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec-CceEEeeeeecccc----h----------hhhhcccc
Confidence 346999999987778889999999999999999999999999 67799999864210 0 01111112
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
.|...||++.|+||++++|++|.|.+|.||.+...
T Consensus 616 -~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 616 -AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred -ccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 24457999999999999999999999999998764
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.18 E-value=2.4e-09 Score=115.92 Aligned_cols=133 Identities=15% Similarity=0.191 Sum_probs=99.7
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEecC-----CeEEEEeCC-eEEEEECCCCceeEEEeecCCccccCCCcccccc
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-----RIVAVGLAT-QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S~V~sV~~S~-----~iLAVgl~~-~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv 245 (994)
+.++++||..|-+..-+++++..||+-+++| -++|+|..+ +|++.|+..+..-++|.+|..
T Consensus 123 DhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~------------- 189 (397)
T KOG4283|consen 123 DHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD------------- 189 (397)
T ss_pred cceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC-------------
Confidence 6899999999999999999999999888887 367788876 799999999999888887754
Q ss_pred CccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCC
Q 001935 246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (994)
Q Consensus 246 ~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s 325 (994)
+.||+. |. |.+.
T Consensus 190 --~vlaV~-------------Ws-------------------p~~e---------------------------------- 201 (397)
T KOG4283|consen 190 --GVLAVE-------------WS-------------------PSSE---------------------------------- 201 (397)
T ss_pred --ceEEEE-------------ec-------------------cCce----------------------------------
Confidence 234432 10 0000
Q ss_pred CCCccCCCccccccccccccCCCCeEEEEECCCC------------c---EEEEeccCCCCeEEEEECCCCCEEEEEEcC
Q 001935 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR------------A---IISQFKAHTSPISALCFDPSGTLLVTASVY 390 (994)
Q Consensus 326 ~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~------------~---~i~~~~aHtspIsaLaFSPdGtlLATAS~d 390 (994)
..+++++.||.|++||+..- + .+.+=.+|.+.|+.|||+.||.+|++.+.+
T Consensus 202 --------------~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 202 --------------WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred --------------eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence 01234556777777776532 1 222345789999999999999999999997
Q ss_pred CCeEEEEeCC
Q 001935 391 GNNINIFRIM 400 (994)
Q Consensus 391 Gt~IrVwdi~ 400 (994)
++ ||+|+..
T Consensus 268 ~r-~r~wn~~ 276 (397)
T KOG4283|consen 268 DR-IRVWNME 276 (397)
T ss_pred cc-eEEeecc
Confidence 76 9999975
No 130
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.18 E-value=2.6e-10 Score=123.92 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=86.6
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
.+++-|.+..+||++++.++..|.+|.+.++-++-.|.-+|++|+|. ++++|+||..+. ...+
T Consensus 288 vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr-DtTFRLWDFRea----------------I~sV 350 (481)
T KOG0300|consen 288 VTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR-DTTFRLWDFREA----------------IQSV 350 (481)
T ss_pred eeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc-CceeEeccchhh----------------ccee
Confidence 45677889999999999999999999999999999999999999998 677999998752 1233
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCC
Q 001935 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~ 466 (994)
..| .|++ ..|+++.|.-|. .+++||+|.||+||++.....+
T Consensus 351 ~VF-QGHt-dtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsp 391 (481)
T KOG0300|consen 351 AVF-QGHT-DTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSP 391 (481)
T ss_pred eee-cccc-cceeEEEEecCC-ceeecCCCceEEEeeeccccCc
Confidence 334 5654 579999999875 5789999999999999876544
No 131
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.17 E-value=1.1e-09 Score=131.06 Aligned_cols=107 Identities=17% Similarity=0.282 Sum_probs=86.8
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcce
Q 001935 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~ 420 (994)
+.+++-|.+|++|++....++..|. |..-|+|++|+| |-+++++||.||+ ||||+|... .+.
T Consensus 383 LLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~K-vRiWsI~d~---------------~Vv 445 (712)
T KOG0283|consen 383 LLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGK-VRLWSISDK---------------KVV 445 (712)
T ss_pred eEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccc-eEEeecCcC---------------eeE
Confidence 3467889999999999999998886 999999999999 6689999999877 999999531 112
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcccc
Q 001935 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 470 (994)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~ 470 (994)
.-+.+ ...|++++|+|||++.++|+.+|.+++|.....+-...++
T Consensus 446 ~W~Dl-----~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 446 DWNDL-----RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eehhh-----hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 22233 2469999999999999999999999999987655544443
No 132
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=3.1e-09 Score=123.20 Aligned_cols=316 Identities=16% Similarity=0.150 Sum_probs=183.1
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
.+|++.|....-| +.+..|+.|.++| ++||-+. +|.|...+.. |+.|++|++.|.+ ..+
T Consensus 397 rGHtg~Vr~iSvd-------p~G~wlasGsdDGtvriWEi~-TgRcvr~~~~-d~~I~~vaw~P~~-----------~~~ 456 (733)
T KOG0650|consen 397 RGHTGLVRSISVD-------PSGEWLASGSDDGTVRIWEIA-TGRCVRTVQF-DSEIRSVAWNPLS-----------DLC 456 (733)
T ss_pred eccCCeEEEEEec-------CCcceeeecCCCCcEEEEEee-cceEEEEEee-cceeEEEEecCCC-----------Cce
Confidence 4577777766655 3578999999988 8999994 6767666654 6789999999987 336
Q ss_pred EEEEEecCCCCCCCCCCCCC-Ccccc-ccCCcCCCCCCCCCCCCEEEEEECC---CCe--EEEEEeCCCcEEEEEecC--
Q 001935 132 FLLVVAGEDTNTLAPGQNRS-HLGGV-RDGMMDSQSGNCVNSPTAVRFYSFQ---SHC--YEHVLRFRSSVCMVRCSP-- 202 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~-~~~~v-r~g~~d~~~~~~~~sp~tVrLWDlk---tge--~V~tL~f~S~V~sV~~S~-- 202 (994)
+|||..++...-..+ .+| .+-.. ....+-..+ +-...+..|-.|.-. .++ .-.+|++...|..|.+++
T Consensus 457 vLAvA~~~~~~ivnp--~~G~~~e~~~t~ell~~~~-~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG 533 (733)
T KOG0650|consen 457 VLAVAVGECVLIVNP--IFGDRLEVGPTKELLASAP-NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG 533 (733)
T ss_pred eEEEEecCceEEeCc--cccchhhhcchhhhhhcCC-CccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence 777654432100000 000 00000 000000000 001124678889643 222 223578889999999988
Q ss_pred CeEEEEeC----CeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc---cEEEEccCCeeeccCCccCCC
Q 001935 203 RIVAVGLA----TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASNTLLLSNSGRLSPQ 275 (994)
Q Consensus 203 ~iLAVgl~----~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp---RwLAyas~~~~iwd~G~~s~q 275 (994)
+.|++... ..|.|+++...+.. .|-. . ..| ....+.|.| .++......++|.+.-
T Consensus 534 DYlatV~~~~~~~~VliHQLSK~~sQ-----~PF~-k-skG------~vq~v~FHPs~p~lfVaTq~~vRiYdL~----- 595 (733)
T KOG0650|consen 534 DYLATVMPDSGNKSVLIHQLSKRKSQ-----SPFR-K-SKG------LVQRVKFHPSKPYLFVATQRSVRIYDLS----- 595 (733)
T ss_pred ceEEEeccCCCcceEEEEeccccccc-----Cchh-h-cCC------ceeEEEecCCCceEEEEeccceEEEehh-----
Confidence 57877554 46999987643311 1110 0 000 001123333 2222222233333310
Q ss_pred cCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEE
Q 001935 276 NLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKD 355 (994)
Q Consensus 276 sltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwD 355 (994)
..+-.|.+..|+ ++. +.++.++.+. .+.-+++|+.+..+|
T Consensus 596 ----------------------kqelvKkL~tg~-----kwi---------S~msihp~GD----nli~gs~d~k~~WfD 635 (733)
T KOG0650|consen 596 ----------------------KQELVKKLLTGS-----KWI---------SSMSIHPNGD----NLILGSYDKKMCWFD 635 (733)
T ss_pred ----------------------HHHHHHHHhcCC-----eee---------eeeeecCCCC----eEEEecCCCeeEEEE
Confidence 011123333332 121 1222233222 123467899999999
Q ss_pred CCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc---
Q 001935 356 FVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS--- 431 (994)
Q Consensus 356 l~s~-~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~--- 431 (994)
+.-. +...+++-|...|.+++|++.=-|+|+||.||+ +.||.-+-..+.. . +.-.+.+.+| ||+..
T Consensus 636 ldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt-v~Vfhg~VY~Dl~--q------npliVPlK~L-~gH~~~~~ 705 (733)
T KOG0650|consen 636 LDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT-VIVFHGMVYNDLL--Q------NPLIVPLKRL-RGHEKTND 705 (733)
T ss_pred cccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc-EEEEeeeeehhhh--c------CCceEeeeec-cCceeecc
Confidence 9854 577899999999999999999999999999887 7788643210000 0 1122455555 45432
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 001935 432 ATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 432 a~I~sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
..|.++.|.|.--||.+++.||||++|.
T Consensus 706 ~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 706 LGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred cceEeecccCCCceEEecCCCceEEeeC
Confidence 2488999999999999999999999993
No 133
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.14 E-value=2.5e-09 Score=121.17 Aligned_cols=176 Identities=11% Similarity=0.105 Sum_probs=129.4
Q ss_pred CCEEEEEECCCCeEEEEEeCC-CcEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCc
Q 001935 172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~-S~V~sV~~S~---~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~ 247 (994)
++.|.||+.++.+.+++++.+ ..|.+++|-. ++.+.+.+..|++|++..+..+.++.+|+..
T Consensus 223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~-------------- 288 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDG-------------- 288 (479)
T ss_pred CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccc--------------
Confidence 478999999999999998754 6899888865 5677777889999999988877777776551
Q ss_pred cceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCC
Q 001935 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (994)
Q Consensus 248 gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s 327 (994)
.++++. .+.++ +
T Consensus 289 -v~~Ida------------L~reR---------------------~---------------------------------- 300 (479)
T KOG0299|consen 289 -VLGIDA------------LSRER---------------------C---------------------------------- 300 (479)
T ss_pred -eeeech------------hcccc---------------------e----------------------------------
Confidence 122210 00000 0
Q ss_pred CccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCC
Q 001935 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG 407 (994)
Q Consensus 328 ~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~ 407 (994)
...++.|.++++|++.. ..-..|++|.+.|-|++|=.+ ..++|+|.+|. |-+|++..-
T Consensus 301 --------------vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KK----- 358 (479)
T KOG0299|consen 301 --------------VTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKK----- 358 (479)
T ss_pred --------------EEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeeccc-----
Confidence 01235799999999954 445678999999999999755 67889999876 999998531
Q ss_pred CCCCccccCCcceEEEEE--ecccc--------cccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 408 SGNHKYDWNSSHVHLYKL--HRGIT--------SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 408 sG~~~~~~~~s~~~l~~L--~RG~t--------~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
..|+.. --|.. +.+|.+|+-.|.+..+|+||.+|.|+||.+++.
T Consensus 359 ------------kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 359 ------------KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ------------CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 122222 11221 238999999999999999999999999999874
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=4.4e-09 Score=126.66 Aligned_cols=223 Identities=16% Similarity=0.206 Sum_probs=154.9
Q ss_pred EEEEEec-CcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccc
Q 001935 77 VLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG 155 (994)
Q Consensus 77 vL~lGy~-~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~ 155 (994)
.|++|.. +.+++|... .++...+|-+-.-|++.+++.- ++.++|. ++
T Consensus 68 ~f~~~s~~~tv~~y~fp-s~~~~~iL~Rftlp~r~~~v~g-------------~g~~iaa-gs----------------- 115 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFP-SGEEDTILARFTLPIRDLAVSG-------------SGKMIAA-GS----------------- 115 (933)
T ss_pred ceEEeeccceEEEeeCC-CCCccceeeeeeccceEEEEec-------------CCcEEEe-ec-----------------
Confidence 4555555 569999984 5667778887788899988763 3346564 11
Q ss_pred cccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecC--CeEEE-EeCCeEEEEECCCCceeEEEeecC
Q 001935 156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAV-GLATQIYCFDALTLENKFSVLTYP 231 (994)
Q Consensus 156 vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~-f~S~V~sV~~S~--~iLAV-gl~~~I~IwDa~Tle~l~tL~t~p 231 (994)
.+..|++-++.+...+.+++ +..+|.+|.++| .+||| ..+++|+|||+.++.+.+++..-+
T Consensus 116 ---------------dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~ 180 (933)
T KOG1274|consen 116 ---------------DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD 180 (933)
T ss_pred ---------------CceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCC
Confidence 24789999999888888875 557999999998 58887 557899999999999888776422
Q ss_pred CccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccce
Q 001935 232 VPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK 311 (994)
Q Consensus 232 ~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~k 311 (994)
.- + .... .| +. .-++.+|.+|.+++
T Consensus 181 k~----------n-~~~~----s~----------i~--------------~~~aW~Pk~g~la~---------------- 205 (933)
T KOG1274|consen 181 KD----------N-EFIL----SR----------IC--------------TRLAWHPKGGTLAV---------------- 205 (933)
T ss_pred cc----------c-cccc----cc----------ee--------------eeeeecCCCCeEEe----------------
Confidence 10 0 0000 00 00 00122344444432
Q ss_pred eeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc--CCCCeEEEEECCCCCEEEEEEc
Q 001935 312 TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA--HTSPISALCFDPSGTLLVTASV 389 (994)
Q Consensus 312 tlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a--HtspIsaLaFSPdGtlLATAS~ 389 (994)
...++.|++|+..+....-.++. |.+.++.++|||.|+|||+++.
T Consensus 206 ---------------------------------~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~ 252 (933)
T KOG1274|consen 206 ---------------------------------PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTL 252 (933)
T ss_pred ---------------------------------eccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeecc
Confidence 24578899999998877666664 4555999999999999999999
Q ss_pred CCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEE
Q 001935 390 YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458 (994)
Q Consensus 390 dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw 458 (994)
+|. |-|||+... ..++++ ..|.+++|-|++.-|-.-...|+.-+|
T Consensus 253 ~g~-I~vWnv~t~------------------~~~~~~-----~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 253 DGQ-ILVWNVDTH------------------ERHEFK-----RAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred CCc-EEEEecccc------------------hhcccc-----ceeEEEecCCCCCeeEEEeeccccccC
Confidence 877 899998531 112222 358999999999888777777765555
No 135
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.13 E-value=2.8e-08 Score=113.61 Aligned_cols=297 Identities=15% Similarity=0.168 Sum_probs=175.0
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcce---Eeeeecc-CCEEEEEEecCCCCCCCCCCccccCc
Q 001935 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFN---ELVSKRD-GPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 56 kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~---ells~hd-GpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
.|-|.-|.|.- .+++++++...+-+-.|+.. .+.+. .++.+++ .-|-+|+|++++
T Consensus 200 ne~v~~a~FHP------td~nliit~Gk~H~~Fw~~~-~~~l~k~~~~fek~ekk~Vl~v~F~eng-------------- 258 (626)
T KOG2106|consen 200 NEVVFLATFHP------TDPNLIITCGKGHLYFWTLR-GGSLVKRQGIFEKREKKFVLCVTFLENG-------------- 258 (626)
T ss_pred cceEEEEEecc------CCCcEEEEeCCceEEEEEcc-CCceEEEeeccccccceEEEEEEEcCCC--------------
Confidence 35566777752 25677888778889999985 34443 3445554 358889988776
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE-eCCCcEEEEEecC-CeEEEEe
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL-RFRSSVCMVRCSP-RIVAVGL 209 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL-~f~S~V~sV~~S~-~iLAVgl 209 (994)
-|+.+| +.+.|.||+-.+.+..+.. -++..|+++..-+ ..|+.|.
T Consensus 259 --dviTgD-------------------------------S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGg 305 (626)
T KOG2106|consen 259 --DVITGD-------------------------------SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGG 305 (626)
T ss_pred --CEEeec-------------------------------CCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecC
Confidence 133444 2368999999887766655 4567899888766 3455555
Q ss_pred C-CeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc-c-EEEEccCCeeeccCCccCCCcCCCCCCCCCc
Q 001935 210 A-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-R-WLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (994)
Q Consensus 210 ~-~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp-R-wLAyas~~~~iwd~G~~s~qsltp~~~S~st 286 (994)
. .+|..|| .+.+. +.....|+. ++.+. .++=+. . ++-...|.++ .|.+ +
T Consensus 306 KDRki~~Wd-~~y~k---~r~~elPe~----~G~iR----tv~e~~~di~vGTtrN~iL---~Gt~--~----------- 357 (626)
T KOG2106|consen 306 KDRKIILWD-DNYRK---LRETELPEQ----FGPIR----TVAEGKGDILVGTTRNFIL---QGTL--E----------- 357 (626)
T ss_pred ccceEEecc-ccccc---cccccCchh----cCCee----EEecCCCcEEEeeccceEE---Eeee--c-----------
Confidence 4 4699999 33332 332223211 00000 001000 0 1111111110 0100 0
Q ss_pred CCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 001935 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (994)
Q Consensus 287 Sp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~ 366 (994)
.+-.++. .++..+++- +..++.. -++++++.|+.|++|+ ..+++....
T Consensus 358 --~~f~~~v------------------~gh~delwg------la~hps~----~q~~T~gqdk~v~lW~--~~k~~wt~~ 405 (626)
T KOG2106|consen 358 --NGFTLTV------------------QGHGDELWG------LATHPSK----NQLLTCGQDKHVRLWN--DHKLEWTKI 405 (626)
T ss_pred --CCceEEE------------------Eecccceee------EEcCCCh----hheeeccCcceEEEcc--CCceeEEEE
Confidence 0000111 111111110 0001110 1345788999999999 444443322
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 001935 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (994)
Q Consensus 367 aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (994)
-..|+.|+.|+|.| .||.++..|+ --|.|+.. +.+..++. .++.|..++|||||.+|
T Consensus 406 -~~d~~~~~~fhpsg-~va~Gt~~G~-w~V~d~e~------------------~~lv~~~~--d~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 406 -IEDPAECADFHPSG-VVAVGTATGR-WFVLDTET------------------QDLVTIHT--DNEQLSVVRYSPDGAFL 462 (626)
T ss_pred -ecCceeEeeccCcc-eEEEeeccce-EEEEeccc------------------ceeEEEEe--cCCceEEEEEcCCCCEE
Confidence 23689999999999 8888998887 56778753 24445543 36789999999999999
Q ss_pred EEEeCCCeEEEEecCCCCCCccc-ccccCCCCCCccCCccCCCcccCCCCC
Q 001935 447 AIVSSKGTCHVFVLSPFGGDSGF-QTLSSQGGDPYLFPVLSLPWWCTSSGI 496 (994)
Q Consensus 447 AsgS~dGTVhIw~I~~~gg~~~~-~~H~s~~~~~~~~p~~~lpw~~~ss~~ 496 (994)
|+||.|+.|.||.++..|-.... ..|. -.|++.|-|...+.+.
T Consensus 463 Avgs~d~~iyiy~Vs~~g~~y~r~~k~~-------gs~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSANGRKYSRVGKCS-------GSPITHLDWSSDSQFL 506 (626)
T ss_pred EEecCCCeEEEEEECCCCcEEEEeeeec-------CceeEEeeecCCCceE
Confidence 99999999999999987665432 2221 2788889987766644
No 136
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.13 E-value=1.5e-09 Score=117.37 Aligned_cols=111 Identities=16% Similarity=0.255 Sum_probs=83.7
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCE-EEEEEcCCCeEEEEeCCCCcccCCCCCCc-cccCCcceEE
Q 001935 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTL-LVTASVYGNNINIFRIMPSCMRSGSGNHK-YDWNSSHVHL 422 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtl-LATAS~dGt~IrVwdi~p~~~~~~sG~~~-~~~~~s~~~l 422 (994)
+..+-.|++-|+.+|..-++|.+|+..|.++.|+|...+ |||||.||+ ||+|||... +|+-. .|.... +..
T Consensus 164 gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~-irlWDiRra-----sgcf~~lD~hn~-k~~ 236 (397)
T KOG4283|consen 164 GTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA-IRLWDIRRA-----SGCFRVLDQHNT-KRP 236 (397)
T ss_pred ecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce-EEEEEeecc-----cceeEEeecccC-ccC
Confidence 345567999999999999999999999999999999874 889999887 999999742 12100 000000 111
Q ss_pred EEEe-cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 423 YKLH-RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 423 ~~L~-RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
..++ +-.+..+|..+||+.|+++|++.+.|..+++|+...
T Consensus 237 p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 237 PILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred ccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 1122 334567899999999999999999999999999764
No 137
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.11 E-value=3.3e-09 Score=117.93 Aligned_cols=240 Identities=16% Similarity=0.156 Sum_probs=153.7
Q ss_pred CCCCCCcEE---EEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEee---eeccCCEEEEEEecCCCCCCCCCC
Q 001935 52 SEDLKDQVT---WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELV---SKRDGPVSFLQMQPFPVKDDGCEG 125 (994)
Q Consensus 52 ~~~~kd~V~---wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~ell---s~hdGpV~~v~~lP~p~~s~~~D~ 125 (994)
..+|.+.|. |+.-|+.+ ..++.+|-+..+++|-.+...+..+.+ .+|.++|.+|.+++++.
T Consensus 140 ~~Ght~~ik~v~~v~~n~~~------~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt------- 206 (423)
T KOG0313|consen 140 IVGHTGPIKSVAWVIKNSSS------CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT------- 206 (423)
T ss_pred EecCCcceeeeEEEecCCcc------ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC-------
Confidence 445555544 44444321 246666666789999987655444443 37889999999887651
Q ss_pred ccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECC------------------------
Q 001935 126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ------------------------ 181 (994)
Q Consensus 126 F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlk------------------------ 181 (994)
. + ++ |+| +++|+||+..
T Consensus 207 ------r-~-~S---------------------gS~----------D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 207 ------R-F-CS---------------------GSW----------DTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred ------e-E-Ee---------------------ecc----------cceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 1 2 22 233 4788888821
Q ss_pred -CCeEEEEEe-CCCcEEEEEecCC--eEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--c
Q 001935 182 -SHCYEHVLR-FRSSVCMVRCSPR--IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--R 255 (994)
Q Consensus 182 -tge~V~tL~-f~S~V~sV~~S~~--iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--R 255 (994)
++..+-+|. +..+|.+|-|.+. .+.++.|.+|+.||+.+..+.-++.+... ++.+++++ +
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks--------------l~~i~~~~~~~ 313 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS--------------LNCISYSPLSK 313 (423)
T ss_pred cccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcc--------------eeEeecccccc
Confidence 223344554 4468999999874 45567788999999999998888876322 34455555 7
Q ss_pred EEEEccCC--eeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCC
Q 001935 256 WLAYASNT--LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS 333 (994)
Q Consensus 256 wLAyas~~--~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~ 333 (994)
.||.++.. +++||- |. .+|+++. .+|.++.+-+ +....+|
T Consensus 314 Ll~~gssdr~irl~DP-R~----------------~~gs~v~---------------~s~~gH~nwV------ssvkwsp 355 (423)
T KOG0313|consen 314 LLASGSSDRHIRLWDP-RT----------------GDGSVVS---------------QSLIGHKNWV------SSVKWSP 355 (423)
T ss_pred eeeecCCCCceeecCC-CC----------------CCCceeE---------------Eeeecchhhh------hheecCC
Confidence 77777653 456761 10 1122222 2222332211 1111111
Q ss_pred ccccccccccccCCCCeEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCC
Q 001935 334 VWKVGRHAGADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 334 ~~k~g~~~~as~s~dG~V~VwDl~s~~-~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (994)
...+.++++++|+++++||+.+-+ .+-.|.+|...|.++.++ +|.+++||+.| .+|+||.-.
T Consensus 356 ---~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD-~~l~i~~~~ 418 (423)
T KOG0313|consen 356 ---TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGAD-NKLRIFKGS 418 (423)
T ss_pred ---CCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCc-ceEEEeccc
Confidence 122356789999999999999876 889999999999999997 55789999994 569999853
No 138
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.11 E-value=1.3e-08 Score=111.30 Aligned_cols=209 Identities=13% Similarity=0.119 Sum_probs=129.8
Q ss_pred CCEEEEEECCCCeEEEEEeC-CCcEEEEEecC-----CeEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCcccccc
Q 001935 172 PTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP-----RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f-~S~V~sV~~S~-----~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv 245 (994)
+-+|+|||+++...+..|-. .+.|.++.|.+ .+|..+.+++|.+||+...+++.++..|...
T Consensus 62 DetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~------------ 129 (362)
T KOG0294|consen 62 DETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ------------ 129 (362)
T ss_pred CCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc------------
Confidence 57899999999988887754 46899999976 3455666778999999999999999877541
Q ss_pred CccceEEcc-cE--EEEccC-CeeeccC--CccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeecccccc
Q 001935 246 GYGPMAVGP-RW--LAYASN-TLLLSNS--GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 319 (994)
Q Consensus 246 ~~gplAlgp-Rw--LAyas~-~~~iwd~--G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~ 319 (994)
.+-+++.| .- |+..++ .+.+|+. |+.. ++ ..|..+..
T Consensus 130 -Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a-------------------~v----------------~~L~~~at- 172 (362)
T KOG0294|consen 130 -VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA-------------------FV----------------LNLKNKAT- 172 (362)
T ss_pred -cceeEecCCCceEEEEcCCceeeeehhhcCccc-------------------ee----------------eccCCcce-
Confidence 13355544 22 334444 3567763 3320 00 01111100
Q ss_pred ccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeC
Q 001935 320 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (994)
Q Consensus 320 l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (994)
.+.+++.+.+ ++ ......|-||-+.+-.+...+.-. ..+.++.|...+ .|++|..+ ..|++||.
T Consensus 173 --------~v~w~~~Gd~----F~-v~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~~-~L~vG~d~-~~i~~~D~ 236 (362)
T KOG0294|consen 173 --------LVSWSPQGDH----FV-VSGRNKIDIYQLDNASVFREIENP-KRILCATFLDGS-ELLVGGDN-EWISLKDT 236 (362)
T ss_pred --------eeEEcCCCCE----EE-EEeccEEEEEecccHhHhhhhhcc-ccceeeeecCCc-eEEEecCC-ceEEEecc
Confidence 0111111110 00 112345778887765544333322 347788887655 45567664 45999997
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE--ccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--SHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 400 ~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaF--SpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
.. + ..++.|. + |.+.|-+|.| .|++.+|+++|+||.|+||+++...
T Consensus 237 ds-------~----------~~~~~~~-A-H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 237 DS-------D----------TPLTEFL-A-HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CC-------C----------ccceeee-c-chhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 42 2 3555554 3 4577999884 3788999999999999999998753
No 139
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=9.9e-09 Score=111.94 Aligned_cols=245 Identities=16% Similarity=0.123 Sum_probs=156.5
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcE
Q 001935 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (994)
Q Consensus 54 ~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpL 132 (994)
..+|.|.-+.|.. ..+.|+++..+| +++||++.. .+ .+.=.|++|+-..+|-+.-
T Consensus 11 pP~d~IS~v~f~~-------~~~~LLvssWDgslrlYdv~~~-~l-~~~~~~~~plL~c~F~d~~--------------- 66 (323)
T KOG1036|consen 11 PPEDGISSVKFSP-------SSSDLLVSSWDGSLRLYDVPAN-SL-KLKFKHGAPLLDCAFADES--------------- 66 (323)
T ss_pred CChhceeeEEEcC-------cCCcEEEEeccCcEEEEeccch-hh-hhheecCCceeeeeccCCc---------------
Confidence 3589999999972 334555555665 999999643 22 3333578888888876421
Q ss_pred EEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEEEe
Q 001935 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGL 209 (994)
Q Consensus 133 LAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~---~iLAVgl 209 (994)
-++ .|+ .++.|+.+|+.+++......+..+|.+|...+ .+++.+.
T Consensus 67 ~~~-~G~-------------------------------~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsW 114 (323)
T KOG1036|consen 67 TIV-TGG-------------------------------LDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSW 114 (323)
T ss_pred eEE-Eec-------------------------------cCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEccc
Confidence 122 221 25789999999998766667778999998885 3566677
Q ss_pred CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCC
Q 001935 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (994)
Q Consensus 210 ~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~ 289 (994)
+++|++||.++.....++.. +.. | ..|.++
T Consensus 115 D~~ik~wD~R~~~~~~~~d~-~kk---------V----y~~~v~------------------------------------ 144 (323)
T KOG1036|consen 115 DKTIKFWDPRNKVVVGTFDQ-GKK---------V----YCMDVS------------------------------------ 144 (323)
T ss_pred CccEEEEecccccccccccc-Cce---------E----EEEecc------------------------------------
Confidence 88999999886222111110 000 0 000000
Q ss_pred CCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc--
Q 001935 290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA-- 367 (994)
Q Consensus 290 ~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a-- 367 (994)
+.. +.-+..+..|.+||+.+....-+.+.
T Consensus 145 g~~-------------------------------------------------LvVg~~~r~v~iyDLRn~~~~~q~reS~ 175 (323)
T KOG1036|consen 145 GNR-------------------------------------------------LVVGTSDRKVLIYDLRNLDEPFQRRESS 175 (323)
T ss_pred CCE-------------------------------------------------EEEeecCceEEEEEcccccchhhhcccc
Confidence 001 11234677899999998765444443
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc----cc-ccEEEEEEccC
Q 001935 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI----TS-ATIQDICFSHY 442 (994)
Q Consensus 368 HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~----t~-a~I~sIaFSpD 442 (994)
-.-++.++++-|++.=.|.+|.+|+ |-|=.+.+... ..+..-.++.+|-. .. -+|.+|+|+|-
T Consensus 176 lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~~-----------~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 176 LKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSEE-----------AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred ceeEEEEEEEecCCCceEEEeecce-EEEEccCCchH-----------HhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 2347889999999998999999998 44433322100 00112223333321 11 26899999999
Q ss_pred CCEEEEEeCCCeEEEEecCCCCC
Q 001935 443 SQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 443 g~~LAsgS~dGTVhIw~I~~~gg 465 (994)
-+.||+|+.||-|-+|++.+.+.
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred cceEEecCCCceEEEccCcchhh
Confidence 99999999999999999887654
No 140
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.07 E-value=6.4e-10 Score=135.76 Aligned_cols=139 Identities=16% Similarity=0.123 Sum_probs=102.1
Q ss_pred cccC--CCCeEEEEECCC------------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCC
Q 001935 343 ADMD--NAGIVVVKDFVT------------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (994)
Q Consensus 343 as~s--~dG~V~VwDl~s------------~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~s 408 (994)
++++ .||.++||.... .+.+.+...|.+.|+|+.|+|||++||+||. ++.|.||+-.+......-
T Consensus 29 aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD-D~~v~iW~~~~~~~~~~f 107 (942)
T KOG0973|consen 29 ATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD-DRLVMIWERAEIGSGTVF 107 (942)
T ss_pred ecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC-cceEEEeeecccCCcccc
Confidence 3455 688888998753 3466788899999999999999999999998 577999998641000000
Q ss_pred CCCcc-ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcccccccCCCCCCccCCc
Q 001935 409 GNHKY-DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPV 484 (994)
Q Consensus 409 G~~~~-~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~s~~~~~~~~p~ 484 (994)
|.+.. ..-..++..+.| ||| ...|.+++||||+.+||++|.|++|+||+...++....++.|.+.++|....|+
T Consensus 108 gs~g~~~~vE~wk~~~~l-~~H-~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~ 182 (942)
T KOG0973|consen 108 GSTGGAKNVESWKVVSIL-RGH-DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPI 182 (942)
T ss_pred cccccccccceeeEEEEE-ecC-CCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCc
Confidence 10000 011122344444 675 467999999999999999999999999999999878888999888877555554
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=3.4e-08 Score=116.19 Aligned_cols=246 Identities=14% Similarity=0.147 Sum_probs=164.3
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcE
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpL 132 (994)
+.+-|.+.|+ +..+++.+|.++.+.-||+.+ .+-+..+....|++..+++.|.. ..
T Consensus 69 drsIE~L~W~----------e~~RLFS~g~sg~i~EwDl~~-lk~~~~~d~~gg~IWsiai~p~~-------------~~ 124 (691)
T KOG2048|consen 69 DRSIESLAWA----------EGGRLFSSGLSGSITEWDLHT-LKQKYNIDSNGGAIWSIAINPEN-------------TI 124 (691)
T ss_pred CCceeeEEEc----------cCCeEEeecCCceEEEEeccc-CceeEEecCCCcceeEEEeCCcc-------------ce
Confidence 3355666666 146788888888899999954 44444444556889999888653 24
Q ss_pred EEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC---CCcEEEEEecCC--eEEE
Q 001935 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF---RSSVCMVRCSPR--IVAV 207 (994)
Q Consensus 133 LAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f---~S~V~sV~~S~~--iLAV 207 (994)
++| .||+ +.+.+.+...+.......| .++|++|+|++. .||.
T Consensus 125 l~I-gcdd--------------------------------Gvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~ 171 (691)
T KOG2048|consen 125 LAI-GCDD--------------------------------GVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAG 171 (691)
T ss_pred EEe-ecCC--------------------------------ceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEe
Confidence 565 4432 3455666666655444434 378999999994 3677
Q ss_pred EeCCe-EEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCc
Q 001935 208 GLATQ-IYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (994)
Q Consensus 208 gl~~~-I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~st 286 (994)
|..+. |+|||+.+...++.+. -.. +-++ .+...++|.. +
T Consensus 172 Gs~Dg~Iriwd~~~~~t~~~~~-~~~-----------------d~l~------k~~~~iVWSv-----~----------- 211 (691)
T KOG2048|consen 172 GSIDGVIRIWDVKSGQTLHIIT-MQL-----------------DRLS------KREPTIVWSV-----L----------- 211 (691)
T ss_pred cccCceEEEEEcCCCceEEEee-ecc-----------------cccc------cCCceEEEEE-----E-----------
Confidence 76654 9999999988776322 111 0000 0112233420 0
Q ss_pred CCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 001935 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (994)
Q Consensus 287 Sp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~ 366 (994)
| +.+ -++++++..|.|++||...+.++..++
T Consensus 212 -----------------------------~----Lrd----------------~tI~sgDS~G~V~FWd~~~gTLiqS~~ 242 (691)
T KOG2048|consen 212 -----------------------------F----LRD----------------STIASGDSAGTVTFWDSIFGTLIQSHS 242 (691)
T ss_pred -----------------------------E----eec----------------CcEEEecCCceEEEEcccCcchhhhhh
Confidence 0 000 024567889999999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 001935 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (994)
Q Consensus 367 aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (994)
.|...|.||+-++++.+|++|+.|+++|+.... +. + + +-+...+|-.|...|++++-.++ .|
T Consensus 243 ~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~-~~------~--------~-~wv~~~~r~~h~hdvrs~av~~~--~l 304 (691)
T KOG2048|consen 243 CHDADVLALAVADNEDRVFSAGVDPKIIQYSLT-TN------K--------S-EWVINSRRDLHAHDVRSMAVIEN--AL 304 (691)
T ss_pred hhhcceeEEEEcCCCCeEEEccCCCceEEEEec-CC------c--------c-ceeeeccccCCcccceeeeeecc--eE
Confidence 999999999999999999999999997776654 21 1 0 11222334445567999999987 89
Q ss_pred EEEeCCCeEEEEecCC
Q 001935 447 AIVSSKGTCHVFVLSP 462 (994)
Q Consensus 447 AsgS~dGTVhIw~I~~ 462 (994)
.+|+.|.|+-|=....
T Consensus 305 ~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 305 ISGGRDFTLAICSSRE 320 (691)
T ss_pred EecceeeEEEEccccc
Confidence 9999999987655443
No 142
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.07 E-value=3.3e-09 Score=124.43 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=94.2
Q ss_pred CCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCC---CCEEEEEEcCCCeEEEEeCCCCcccCCC
Q 001935 332 NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGS 408 (994)
Q Consensus 332 s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPd---GtlLATAS~dGt~IrVwdi~p~~~~~~s 408 (994)
+|.++++ ++++.-|.++|||++..+....+.||.+.|.||.||.- -+|||+||. |+.|+|||+..++.--.+
T Consensus 468 Sp~gqhL----AsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr-dRlIHV~Dv~rny~l~qt 542 (1080)
T KOG1408|consen 468 SPDGQHL----ASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR-DRLIHVYDVKRNYDLVQT 542 (1080)
T ss_pred CCCccee----cccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC-CceEEEEecccccchhhh
Confidence 3455544 47889999999999999999999999999999999843 368999998 899999999876421100
Q ss_pred --C----CCccccCCcc--eE--------------------EEEEeccccc---ccEEEEEEccCCCEEEEEeCCCeEEE
Q 001935 409 --G----NHKYDWNSSH--VH--------------------LYKLHRGITS---ATIQDICFSHYSQWIAIVSSKGTCHV 457 (994)
Q Consensus 409 --G----~~~~~~~~s~--~~--------------------l~~L~RG~t~---a~I~sIaFSpDg~~LAsgS~dGTVhI 457 (994)
+ -++..+.... +. -..|.|+++. ..+++++..|..++++++..|..|+|
T Consensus 543 ld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrniri 622 (1080)
T KOG1408|consen 543 LDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRI 622 (1080)
T ss_pred hcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEE
Confidence 0 0000000000 00 0112233321 25999999999999999999999999
Q ss_pred EecCCCCCCccc
Q 001935 458 FVLSPFGGDSGF 469 (994)
Q Consensus 458 w~I~~~gg~~~~ 469 (994)
|++...+....|
T Consensus 623 f~i~sgKq~k~F 634 (1080)
T KOG1408|consen 623 FDIESGKQVKSF 634 (1080)
T ss_pred Eeccccceeeee
Confidence 999886655555
No 143
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=5.7e-09 Score=118.48 Aligned_cols=221 Identities=14% Similarity=0.195 Sum_probs=139.9
Q ss_pred CCCCeEEEEEec-CcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCC
Q 001935 72 SVFKQVLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR 150 (994)
Q Consensus 72 ~~~~~vL~lGy~-~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~ 150 (994)
.+.+.+|+.|.- +.+-+|.+ .+|.+..+++.|=-+|.+++|.-++ -++. +++
T Consensus 90 ~n~G~~l~ag~i~g~lYlWel-ssG~LL~v~~aHYQ~ITcL~fs~dg-------------s~ii--Tgs----------- 142 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWEL-SSGILLNVLSAHYQSITCLKFSDDG-------------SHII--TGS----------- 142 (476)
T ss_pred CCCceEEEeecccCcEEEEEe-ccccHHHHHHhhccceeEEEEeCCC-------------cEEE--ecC-----------
Confidence 356888999855 45999999 5799999999999999999998554 1322 221
Q ss_pred CCccccccCCcCCCCCCCCCCCCEEEEEECC---------CCeEEEEEeCCC-cEEEEEec-----CCeEEEEeCCeEEE
Q 001935 151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ---------SHCYEHVLRFRS-SVCMVRCS-----PRIVAVGLATQIYC 215 (994)
Q Consensus 151 ~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlk---------tge~V~tL~f~S-~V~sV~~S-----~~iLAVgl~~~I~I 215 (994)
.|+.|.+|++- +-+.++.+..|. +|.++.+. ++++.++.|..|+|
T Consensus 143 --------------------kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~ 202 (476)
T KOG0646|consen 143 --------------------KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKL 202 (476)
T ss_pred --------------------CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEE
Confidence 13567777652 123445554444 77777664 36777888889999
Q ss_pred EECCCCceeEEEeecCCccccCCCccccccCccceEEcc-cEEEEccCCe-eeccCCccCCCcCCCCCCCCCcCCCCCce
Q 001935 216 FDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-RWLAYASNTL-LLSNSGRLSPQNLTPSGVSPSTSPGGSSL 293 (994)
Q Consensus 216 wDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp-RwLAyas~~~-~iwd~G~~s~qsltp~~~S~stSp~~gsL 293 (994)
||+..+..+.++.. |. ....+++.| -...|.|... .||-
T Consensus 203 wdlS~g~LLlti~f-p~-------------si~av~lDpae~~~yiGt~~G~I~~------------------------- 243 (476)
T KOG0646|consen 203 WDLSLGVLLLTITF-PS-------------SIKAVALDPAERVVYIGTEEGKIFQ------------------------- 243 (476)
T ss_pred EEeccceeeEEEec-CC-------------cceeEEEcccccEEEecCCcceEEe-------------------------
Confidence 99999988877764 22 124567766 2334444311 1110
Q ss_pred EEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCC--C
Q 001935 294 VARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTS--P 371 (994)
Q Consensus 294 Va~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHts--p 371 (994)
..+.++ +. . ..+=.++.++.. +..+..|.+|.. +
T Consensus 244 --------------~~~~~~--------~~-----~----------------~~~v~~k~~~~~-~t~~~~~~Gh~~~~~ 279 (476)
T KOG0646|consen 244 --------------NLLFKL--------SG-----Q----------------SAGVNQKGRHEE-NTQINVLVGHENESA 279 (476)
T ss_pred --------------eehhcC--------Cc-----c----------------cccccccccccc-cceeeeeccccCCcc
Confidence 000000 00 0 000012333333 446678899988 9
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 001935 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (994)
Q Consensus 372 IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpD 442 (994)
|+||+.+-||++|+++++||+ ++|||+.. .+++.++.. ...+|+-+.|.|-
T Consensus 280 ITcLais~DgtlLlSGd~dg~-VcvWdi~S-----------------~Q~iRtl~~--~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 280 ITCLAISTDGTLLLSGDEDGK-VCVWDIYS-----------------KQCIRTLQT--SKGPVTNLQINPL 330 (476)
T ss_pred eeEEEEecCccEEEeeCCCCC-EEEEecch-----------------HHHHHHHhh--hccccceeEeecc
Confidence 999999999999999999887 89999842 256555431 1246777777654
No 144
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=3.2e-08 Score=114.88 Aligned_cols=89 Identities=17% Similarity=0.093 Sum_probs=57.1
Q ss_pred CCeEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 348 AGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 348 dG~V~VwDl~s~-~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
+|.++||++... .....+ .|.. ..++|+|||++||.++. +. |.+||+.. | .. ..+.
T Consensus 313 ~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~-~~-i~~~Dl~~-------g----------~~-~~lt 369 (429)
T PRK01742 313 SGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMING-DN-VVKQDLTS-------G----------ST-EVLS 369 (429)
T ss_pred CCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcC-CC-EEEEECCC-------C----------Ce-EEec
Confidence 445566655322 112222 4443 45789999999998876 34 55688753 2 11 1222
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
.+. ...+++|+|||++|+.++.+|++.+|.+..
T Consensus 370 ~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 370 STF---LDESPSISPNGIMIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred CCC---CCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 221 235688999999999999999999988754
No 145
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.02 E-value=8e-07 Score=94.30 Aligned_cols=178 Identities=23% Similarity=0.316 Sum_probs=124.5
Q ss_pred CCEEEEEECCC-CeEEEEEeCC-CcEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEeecCCccccCCCcccccc
Q 001935 172 PTAVRFYSFQS-HCYEHVLRFR-SSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (994)
Q Consensus 172 p~tVrLWDlkt-ge~V~tL~f~-S~V~sV~~S~--~iLAVgl--~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv 245 (994)
++++++||..+ ...+..+..+ ..|..+.+.+ +.++++. +..+++|++.+.+.+..+..|..+
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 200 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP------------ 200 (466)
T ss_pred CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc------------
Confidence 46899999998 7777777655 6888899988 3566654 678999999886655555442221
Q ss_pred CccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCC
Q 001935 246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (994)
Q Consensus 246 ~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s 325 (994)
...+++.. .+..
T Consensus 201 --------v~~~~~~~---------------------------~~~~--------------------------------- 212 (466)
T COG2319 201 --------VSSLAFSP---------------------------DGGL--------------------------------- 212 (466)
T ss_pred --------eEEEEEcC---------------------------Ccce---------------------------------
Confidence 01112211 0000
Q ss_pred CCCccCCCccccccccccccCCCCeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcc
Q 001935 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 404 (994)
Q Consensus 326 ~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~-~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~ 404 (994)
..+.+..|+.|++||...+..+. .+..|...+ ...|+|+|.++++++.++. +++|++...
T Consensus 213 ---------------~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~-- 273 (466)
T COG2319 213 ---------------LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSS-- 273 (466)
T ss_pred ---------------EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCC--
Confidence 01123578899999999888887 799999886 4489999999998888665 999998532
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 405 ~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
. ..+..+ .++ ...|.++.|+|++..+++++.|+++++|++....
T Consensus 274 ----~----------~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 274 ----S----------SLLRTL-SGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred ----C----------cEEEEE-ecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 1 123333 333 4579999999999999999999999999766543
No 146
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.00 E-value=2.3e-08 Score=109.81 Aligned_cols=101 Identities=21% Similarity=0.300 Sum_probs=76.8
Q ss_pred eEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccc
Q 001935 76 QVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG 155 (994)
Q Consensus 76 ~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~ 155 (994)
-+.+.||.+-|+|.|+. .+.+..-+-+|.+.|+.+++.|. +|.|++.+
T Consensus 107 ~la~~G~~GvIrVid~~-~~~~~~~~~ghG~sINeik~~p~-------------~~qlvls~------------------ 154 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVV-SGQCSKNYRGHGGSINEIKFHPD-------------RPQLVLSA------------------ 154 (385)
T ss_pred eEEeecceeEEEEEecc-hhhhccceeccCccchhhhcCCC-------------CCcEEEEe------------------
Confidence 44455555558999994 57788888899999999997764 34445422
Q ss_pred cccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe----CCCcEEEEEecC--CeEE-EEeCCeEEEEECCCCc
Q 001935 156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR----FRSSVCMVRCSP--RIVA-VGLATQIYCFDALTLE 222 (994)
Q Consensus 156 vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~----f~S~V~sV~~S~--~iLA-Vgl~~~I~IwDa~Tle 222 (994)
+.+..||+||++++.||..+. ++..|++|.++. ++++ .|.|.+|.+|++...+
T Consensus 155 --------------SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 155 --------------SKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred --------------cCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 135789999999999999983 567999999987 4555 5778899999988533
No 147
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=3.7e-09 Score=122.54 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=78.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
.....|+|||+....++..+..-...|+.|+.+|.|.-|+.++.+++ +.+||+.-. ..-|+-
T Consensus 584 aTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k-~~WfDldls-----------------skPyk~ 645 (733)
T KOG0650|consen 584 ATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK-MCWFDLDLS-----------------SKPYKT 645 (733)
T ss_pred EeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe-eEEEEcccC-----------------cchhHH
Confidence 35668999999998888888888889999999999999999998655 899998531 122332
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
.|- |...|.+++|.+-=-.+|++|+|||++||--.-|
T Consensus 646 lr~-H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY 682 (733)
T KOG0650|consen 646 LRL-HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVY 682 (733)
T ss_pred hhh-hhhhhhhhhhccccceeeeecCCCcEEEEeeeee
Confidence 243 3456999999998899999999999999974443
No 148
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=2.4e-08 Score=113.44 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=85.5
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcc---
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH--- 419 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~--- 419 (994)
.+++.|.++++||+..+.++..+.-. .+|.|++.+|-++.+..++++|. |-++++.... |. +.+.....
T Consensus 192 ~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~-----~~-~~~v~~k~~~~ 263 (476)
T KOG0646|consen 192 YTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLS-----GQ-SAGVNQKGRHE 263 (476)
T ss_pred EEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEecCCcce-EEeeehhcCC-----cc-ccccccccccc
Confidence 35678999999999999888777643 68999999999999999999886 6666653211 10 01111111
Q ss_pred --eEEEEEeccccc-ccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccc
Q 001935 420 --VHLYKLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 469 (994)
Q Consensus 420 --~~l~~L~RG~t~-a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~ 469 (994)
..+..| -|+.+ ..|.|++.|-||..|++|+.||+|.||++.......++
T Consensus 264 ~~t~~~~~-~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 264 ENTQINVL-VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred ccceeeee-ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 122233 35454 47999999999999999999999999999776554443
No 149
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.96 E-value=3.4e-09 Score=120.67 Aligned_cols=201 Identities=22% Similarity=0.244 Sum_probs=127.4
Q ss_pred EEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEee--cCCccccCCCccccccCccceEEcc--cEEE
Q 001935 185 YEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLT--YPVPQLAGQGAVGINVGYGPMAVGP--RWLA 258 (994)
Q Consensus 185 ~V~tL~f~S~V~sV~~S~--~iLAVgl~~~I~IwDa~Tle~l~tL~t--~p~p~~~~~g~~~vnv~~gplAlgp--RwLA 258 (994)
.+++|.+-.-|+++..+. +.+..|..+.|+|||+.......-+.. .-++ ..+ .-.|-|.+ |-|-
T Consensus 412 q~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~r----dny------iRSckL~pdgrtLi 481 (705)
T KOG0639|consen 412 QINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNR----DNY------IRSCKLLPDGRTLI 481 (705)
T ss_pred hhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCc----ccc------eeeeEecCCCceEE
Confidence 455666667788999876 678889999999999987543321111 1111 110 11234433 5555
Q ss_pred EccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccc
Q 001935 259 YASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWK 336 (994)
Q Consensus 259 yas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k 336 (994)
..+. ++.|||...-++. +... -+| .--+.| ++..+++.+
T Consensus 482 vGGeastlsiWDLAapTpr-ikae----lts----sapaCy------------------------------ALa~spDak 522 (705)
T KOG0639|consen 482 VGGEASTLSIWDLAAPTPR-IKAE----LTS----SAPACY------------------------------ALAISPDAK 522 (705)
T ss_pred eccccceeeeeeccCCCcc-hhhh----cCC----cchhhh------------------------------hhhcCCccc
Confidence 5553 5678874211000 0000 000 000011 122233333
Q ss_pred cccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccC
Q 001935 337 VGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 416 (994)
Q Consensus 337 ~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~ 416 (994)
+. -++-.||.|.|||+.+..++.+|++|+..++||.+++||+.|-|++-| .++|-||+.. |
T Consensus 523 vc----FsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD-ntvRcWDlre-------g------- 583 (705)
T KOG0639|consen 523 VC----FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD-NTVRCWDLRE-------G------- 583 (705)
T ss_pred ee----eeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc-cceeehhhhh-------h-------
Confidence 21 145689999999999999999999999999999999999999999995 5599999964 3
Q ss_pred CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 001935 417 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 417 ~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
+.+.+. .-...|.++..+|.+.|||+|=..+.+-|-.
T Consensus 584 ---rqlqqh---dF~SQIfSLg~cP~~dWlavGMens~vevlh 620 (705)
T KOG0639|consen 584 ---RQLQQH---DFSSQIFSLGYCPTGDWLAVGMENSNVEVLH 620 (705)
T ss_pred ---hhhhhh---hhhhhheecccCCCccceeeecccCcEEEEe
Confidence 233221 1124699999999999999999888765543
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.94 E-value=1.2e-08 Score=119.26 Aligned_cols=109 Identities=15% Similarity=0.148 Sum_probs=71.3
Q ss_pred CCCeEEEEECCCCcE------E--EEeccC---CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCcccc
Q 001935 347 NAGIVVVKDFVTRAI------I--SQFKAH---TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~------i--~~~~aH---tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~ 415 (994)
.|+.|+|||+..... + ..+.-| .-.+.+|..+..|++|...-.|+ .|..|++... +.
T Consensus 238 ~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~-sIy~ynm~s~------s~----- 305 (720)
T KOG0321|consen 238 ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN-SIYFYNMRSL------SI----- 305 (720)
T ss_pred CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC-cEEEEecccc------Cc-----
Confidence 599999999986532 2 222334 33688999999999876555545 4999998532 10
Q ss_pred CCcceEEEEEecccccc--cEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccc-cccc
Q 001935 416 NSSHVHLYKLHRGITSA--TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF-QTLS 473 (994)
Q Consensus 416 ~~s~~~l~~L~RG~t~a--~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~-~~H~ 473 (994)
..+..+ -|.-+. .|- -..|||+++|++|+.|+.+.||.++....++.+ ..|+
T Consensus 306 ----sP~~~~-sg~~~~sf~vk-s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght 360 (720)
T KOG0321|consen 306 ----SPVAEF-SGKLNSSFYVK-SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHT 360 (720)
T ss_pred ----Cchhhc-cCcccceeeee-eecCCCCceEeccCCCcceeeeeecCccCChhhhhCcc
Confidence 011111 111111 122 346899999999999999999999887666544 4664
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.93 E-value=2.6e-08 Score=112.96 Aligned_cols=106 Identities=16% Similarity=0.093 Sum_probs=72.6
Q ss_pred cccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCc
Q 001935 343 ADMDNAGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~----~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s 418 (994)
++++.|++++|||+.... .+....+|+.+|++..|||+|-.|+|.+.|.+ |||||...- ++... ....
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~------sa~~~-p~~~ 410 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCI------SAKDE-PLGT 410 (498)
T ss_pred eecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccc------cccCC-ccce
Confidence 467889999999997642 23455689999999999999988999999655 999997310 00000 0001
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 001935 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 419 ~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
.+|-...-|-. .+.-.+|.||..+|++|-.-.-|-||+
T Consensus 411 I~Hn~~t~Rwl---T~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWL---TPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccc---cchhheeCCCccEEEEeccCcceeEEc
Confidence 11111111111 244578999999999999988898887
No 152
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.93 E-value=9.5e-10 Score=124.53 Aligned_cols=208 Identities=16% Similarity=0.199 Sum_probs=133.2
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEe--cCCeEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccce
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRC--SPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM 250 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~sV~~--S~~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gpl 250 (994)
+.|-.+|+++++..+.+.....|++|.| +.+++||++..-+||||-. +..+++|..+.. ...+
T Consensus 151 GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~~~--------------v~rL 215 (545)
T KOG1272|consen 151 GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRHIR--------------VARL 215 (545)
T ss_pred cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhcCc--------------hhhh
Confidence 5688899999999999999999999998 4589999999999999954 556777775422 1122
Q ss_pred EEcc-c-EEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCC
Q 001935 251 AVGP-R-WLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (994)
Q Consensus 251 Algp-R-wLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~ 328 (994)
.|=| . +||.++.. |-+ +...+|. |.+|+.+. ...|- ...
T Consensus 216 eFLPyHfLL~~~~~~------G~L-----~Y~DVS~------GklVa~~~------t~~G~----------------~~v 256 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEA------GFL-----KYQDVST------GKLVASIR------TGAGR----------------TDV 256 (545)
T ss_pred cccchhheeeecccC------Cce-----EEEeech------hhhhHHHH------ccCCc----------------cch
Confidence 3323 1 22332221 110 0000000 22222110 00110 001
Q ss_pred ccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCC
Q 001935 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (994)
Q Consensus 329 ~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~s 408 (994)
+..|| +++ .+-.+...|+|.+|.-.+.+.+..+..|.+||++|+++++|+|+||++. ++.++|||+...
T Consensus 257 m~qNP---~Na-Vih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~-Dr~~kIWDlR~~------ 325 (545)
T KOG1272|consen 257 MKQNP---YNA-VIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL-DRKVKIWDLRNF------ 325 (545)
T ss_pred hhcCC---ccc-eEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc-ccceeEeeeccc------
Confidence 11122 111 1225678999999999999999999999999999999999999999999 567999999631
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 409 G~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
.+++.++ ++.....++||.-| .||.+ .-.-|+||.=.
T Consensus 326 -----------~ql~t~~---tp~~a~~ls~Sqkg-lLA~~-~G~~v~iw~d~ 362 (545)
T KOG1272|consen 326 -----------YQLHTYR---TPHPASNLSLSQKG-LLALS-YGDHVQIWKDA 362 (545)
T ss_pred -----------cccceee---cCCCcccccccccc-ceeee-cCCeeeeehhh
Confidence 3444443 23345789999654 44444 34468999743
No 153
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=1.1e-07 Score=108.18 Aligned_cols=96 Identities=17% Similarity=0.323 Sum_probs=72.7
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 001935 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~ 424 (994)
.+..|.|.|....+++.+..|+-. +.|+.++|+.||+.|...+.+|. |-||++... .++++
T Consensus 321 ~G~~G~I~lLhakT~eli~s~Kie-G~v~~~~fsSdsk~l~~~~~~Ge-V~v~nl~~~-----------------~~~~r 381 (514)
T KOG2055|consen 321 AGNNGHIHLLHAKTKELITSFKIE-GVVSDFTFSSDSKELLASGGTGE-VYVWNLRQN-----------------SCLHR 381 (514)
T ss_pred cccCceEEeehhhhhhhhheeeec-cEEeeEEEecCCcEEEEEcCCce-EEEEecCCc-----------------ceEEE
Confidence 356677777777777777777643 57899999999999888888785 899999531 24444
Q ss_pred Ee--cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 425 LH--RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 425 L~--RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
+. .+.+ =.+++-|++++|||+||+.|-|.||+.+.
T Consensus 382 f~D~G~v~---gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 382 FVDDGSVH---GTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred EeecCccc---eeeeeecCCCceEEeccCcceEEEeccch
Confidence 42 2222 25788889999999999999999999654
No 154
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=4.3e-07 Score=107.16 Aligned_cols=230 Identities=11% Similarity=0.147 Sum_probs=149.9
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeec-cCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCC
Q 001935 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKR-DGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (994)
Q Consensus 74 ~~~vL~lGy~~G-~qVWDv~~~g~v~ells~h-dGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~ 151 (994)
+.+.||+|-.+| +.||++.+.--+..++.++ +..|..+.+.+.. .| ..+ +
T Consensus 36 kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-------------RL-FS~-g------------- 87 (691)
T KOG2048|consen 36 KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-------------RL-FSS-G------------- 87 (691)
T ss_pred cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-------------eE-Eee-c-------------
Confidence 456799998887 8999997644333444333 4667777776332 12 221 1
Q ss_pred CccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEEEEeCCe-EEEEECCCCceeEEE
Q 001935 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGLATQ-IYCFDALTLENKFSV 227 (994)
Q Consensus 152 ~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~S~V~sV~~S~--~iLAVgl~~~-I~IwDa~Tle~l~tL 227 (994)
..++|..||+.+++....++- .+.|++|+.++ ..++++.++. ++.++....+..+..
T Consensus 88 -------------------~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r 148 (691)
T KOG2048|consen 88 -------------------LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR 148 (691)
T ss_pred -------------------CCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe
Confidence 137899999999999888865 46999999998 6888886654 566666554433221
Q ss_pred eecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhc
Q 001935 228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (994)
Q Consensus 228 ~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~ 307 (994)
.- .. | -.|.|... |+ |+
T Consensus 149 ~l-~r-----q--------------~sRvLsls------w~-------------------~~------------------ 165 (691)
T KOG2048|consen 149 SL-MR-----Q--------------KSRVLSLS------WN-------------------PT------------------ 165 (691)
T ss_pred ec-cc-----c--------------cceEEEEE------ec-------------------CC------------------
Confidence 10 00 0 00111100 10 00
Q ss_pred ccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe-----ccCC---CCeEEEEECC
Q 001935 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-----KAHT---SPISALCFDP 379 (994)
Q Consensus 308 Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~-----~aHt---spIsaLaFSP 379 (994)
+.-++.|..||.|++||+.++..+..+ ++-. .=|.+|.|=.
T Consensus 166 -------------------------------~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr 214 (691)
T KOG2048|consen 166 -------------------------------GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR 214 (691)
T ss_pred -------------------------------ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee
Confidence 001234678999999999998876622 2222 2377888888
Q ss_pred CCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 001935 380 SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 380 dGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
+|+ ||+|+..|+ |.+||-.. |+ ++..+ + .+.+.|.+|+-.++..+|.+++.|++|..|.
T Consensus 215 d~t-I~sgDS~G~-V~FWd~~~-------gT----------LiqS~-~-~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 215 DST-IASGDSAGT-VTFWDSIF-------GT----------LIQSH-S-CHDADVLALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred cCc-EEEecCCce-EEEEcccC-------cc----------hhhhh-h-hhhcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence 876 677888787 89999753 31 22222 1 1457899999999999999999999999998
Q ss_pred cCCCCC
Q 001935 460 LSPFGG 465 (994)
Q Consensus 460 I~~~gg 465 (994)
..+.+.
T Consensus 274 ~~~~~~ 279 (691)
T KOG2048|consen 274 LTTNKS 279 (691)
T ss_pred ecCCcc
Confidence 877654
No 155
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=5.9e-07 Score=104.68 Aligned_cols=83 Identities=16% Similarity=0.108 Sum_probs=53.5
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 001935 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (994)
Q Consensus 351 V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dG--t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG 428 (994)
|.++|+.+++. ..+..+.......+|+|||++||.++.++ ..|.+|++.. | ....|..+
T Consensus 313 Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-------g-----------~~~~Lt~~ 373 (429)
T PRK03629 313 VYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-------G-----------GVQVLTDT 373 (429)
T ss_pred EEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-------C-----------CeEEeCCC
Confidence 44456665543 33444444566789999999998877543 3477778742 2 12233322
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeE
Q 001935 429 ITSATIQDICFSHYSQWIAIVSSKGTC 455 (994)
Q Consensus 429 ~t~a~I~sIaFSpDg~~LAsgS~dGTV 455 (994)
. ...+.+|||||++|+.++.++..
T Consensus 374 ~---~~~~p~~SpDG~~i~~~s~~~~~ 397 (429)
T PRK03629 374 F---LDETPSIAPNGTMVIYSSSQGMG 397 (429)
T ss_pred C---CCCCceECCCCCEEEEEEcCCCc
Confidence 1 23568899999999999988763
No 156
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=9.4e-09 Score=122.06 Aligned_cols=102 Identities=11% Similarity=0.229 Sum_probs=85.1
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcce
Q 001935 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~ 420 (994)
+.+|++||.|++||+...+...++++....|..+.|+|. +..+|++.. +.+++.||+...
T Consensus 149 liSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d-sG~lqlWDlRqp------------------ 209 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD-SGYLQLWDLRQP------------------ 209 (839)
T ss_pred EEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC-CceEEEeeccCc------------------
Confidence 468899999999999999999999999999999999985 567777777 455999999631
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
..+.++-..|+.+|.++.|+|+..|||+|+.|++|+||++..
T Consensus 210 ~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 210 DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccC
Confidence 222333334677899999999999999999999999999875
No 157
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.91 E-value=6e-09 Score=115.87 Aligned_cols=106 Identities=21% Similarity=0.242 Sum_probs=85.3
Q ss_pred ccccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCc
Q 001935 342 GADMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~---~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s 418 (994)
+++++.||.|+|||+..+ .++.+ +||.+.|+.|.|+..-.+||+++.+|+ ++|||++..- ++
T Consensus 273 faScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~----~~--------- 337 (440)
T KOG0302|consen 273 FASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGT-LSIWDLRQFK----SG--------- 337 (440)
T ss_pred EEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCce-EEEEEhhhcc----CC---------
Confidence 568899999999999987 34443 899999999999999999999999887 9999997531 01
Q ss_pred ceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCeEEEEecCCCCC
Q 001935 419 HVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 419 ~~~l~~L~RG~t~a~I~sIaFSp-Dg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
+.+..|.+ |.++|++|.|+| +...||+++.|.+|.||+|.....
T Consensus 338 -~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 338 -QPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred -CcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 23334433 457899999997 567899999999999999976543
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.89 E-value=3.6e-08 Score=111.89 Aligned_cols=100 Identities=23% Similarity=0.300 Sum_probs=78.5
Q ss_pred CCCCeEEEEECCCCc-EEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 001935 346 DNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (994)
Q Consensus 346 s~dG~V~VwDl~s~~-~i~~~~aHtspIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~ 423 (994)
+.=|...+||+.++. ....++-|...|..|+|+|--. +|||||.|++ .+|||+..- .+. ++ -.|+
T Consensus 298 ~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T-~kIWD~R~l-----~~K------~s-p~ls 364 (498)
T KOG4328|consen 298 DNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT-AKIWDLRQL-----RGK------AS-PFLS 364 (498)
T ss_pred ecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc-eeeeehhhh-----cCC------CC-ccee
Confidence 445688999998865 4788899999999999999875 7999999766 899998642 111 00 1344
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
.+- |...|.+..|||++-.|++.+.|.+|+||+..
T Consensus 365 t~~---HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 365 TLP---HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ccc---ccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 442 44579999999999999999999999999985
No 159
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=1.2e-06 Score=102.03 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=59.8
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 350 ~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dG--t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
.|.++|+.+++. ..+..+...+...+|+|||++||..+.++ ..|.+|++.. + ....+..
T Consensus 315 ~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~-------~-----------~~~~lt~ 375 (435)
T PRK05137 315 QLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG-------S-----------GERILTS 375 (435)
T ss_pred eEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC-------C-----------ceEeccC
Confidence 577788776554 33433445567789999999999877543 3466667531 1 1122322
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCe----EEEEecCCCCCC
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSKGT----CHVFVLSPFGGD 466 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~dGT----VhIw~I~~~gg~ 466 (994)
+ ..+.+.+|||||++|+..+.++. ..||.++..++.
T Consensus 376 ~---~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 376 G---FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred C---CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 2 23678999999999988776532 356666554443
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.86 E-value=4.6e-08 Score=111.61 Aligned_cols=207 Identities=15% Similarity=0.262 Sum_probs=141.1
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCc
Q 001935 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (994)
Q Consensus 75 ~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~ 153 (994)
...++.|..++ ++|||+. ..-+++.+..|...|.+|.+-- ...++|.|+.
T Consensus 91 S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~-------------~DeyiAsvs~--------------- 141 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNN-------------TDEYIASVSD--------------- 141 (673)
T ss_pred ceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecC-------------CcceeEEecc---------------
Confidence 45667776665 8999995 5667788888999999988652 2247786542
Q ss_pred cccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC--cEEEEEecC--C-eEEE-EeCCeEEEEECCCCceeEEE
Q 001935 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--R-IVAV-GLATQIYCFDALTLENKFSV 227 (994)
Q Consensus 154 ~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S--~V~sV~~S~--~-iLAV-gl~~~I~IwDa~Tle~l~tL 227 (994)
.+-|.|-+++++..-.++...+ .|+-+++++ + +|.. +.++.|.+||+..+...+..
T Consensus 142 ------------------gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~ 203 (673)
T KOG4378|consen 142 ------------------GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA 203 (673)
T ss_pred ------------------CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch
Confidence 1458888999998888887763 456777776 4 4444 44557999999887766544
Q ss_pred ee-cCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhh
Q 001935 228 LT-YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (994)
Q Consensus 228 ~t-~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la 306 (994)
.. |..| -.-+.|+|++..|
T Consensus 204 ~~~HsAP-----------------------------------------------~~gicfspsne~l------------- 223 (673)
T KOG4378|consen 204 SEAHSAP-----------------------------------------------CRGICFSPSNEAL------------- 223 (673)
T ss_pred hhhccCC-----------------------------------------------cCcceecCCccce-------------
Confidence 32 3222 0011233332222
Q ss_pred cccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 001935 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT 386 (994)
Q Consensus 307 ~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLAT 386 (994)
+++.+.|..|.+||....+....|.. ..|+++|+|+++|++|+.
T Consensus 224 -----------------------------------~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~a 267 (673)
T KOG4378|consen 224 -----------------------------------LVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCA 267 (673)
T ss_pred -----------------------------------EEEecccceEEEeecccccccceeee-cCCcceeeecCCceEEEe
Confidence 23457899999999998877666654 469999999999999999
Q ss_pred EEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 001935 387 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (994)
Q Consensus 387 AS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg 443 (994)
++.+|. |.-||+.-. - ..+..+. .+.+.|++|+|-|--
T Consensus 268 G~s~G~-~i~YD~R~~------k----------~Pv~v~s--ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 268 GNSKGE-LIAYDMRST------K----------APVAVRS--AHDASVTRVAFQPSP 305 (673)
T ss_pred ecCCce-EEEEecccC------C----------CCceEee--ecccceeEEEeeecc
Confidence 999998 678998521 0 2333332 244569999998753
No 161
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.86 E-value=1.1e-07 Score=111.99 Aligned_cols=250 Identities=14% Similarity=0.123 Sum_probs=149.8
Q ss_pred CeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCcc
Q 001935 75 KQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (994)
Q Consensus 75 ~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~ 154 (994)
+..++-|....++|||-... .....+.+|.++|+|+.++|+.. +. +.+ |+|+
T Consensus 25 ~~~vafGa~~~Iav~dp~k~-~i~t~l~GH~a~VnC~~~l~~s~-------~~---a~~--vsG~--------------- 76 (764)
T KOG1063|consen 25 GGLVAFGAGPAIAVADPEKI-LIVTTLDGHVARVNCVHWLPTSE-------IV---AEM--VSGD--------------- 76 (764)
T ss_pred cceEEecCCceEEEeCcccc-eeEEeccCCccceEEEEEccccc-------cc---ceE--EEcc---------------
Confidence 44778888888999997543 35577889999999999998752 11 232 2332
Q ss_pred ccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEE--EeCC-CcEEEEEecCCeEEE-EeCCeEEEEECCCCc--eeEEEe
Q 001935 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHV--LRFR-SSVCMVRCSPRIVAV-GLATQIYCFDALTLE--NKFSVL 228 (994)
Q Consensus 155 ~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~t--L~f~-S~V~sV~~S~~iLAV-gl~~~I~IwDa~Tle--~l~tL~ 228 (994)
++++|++|-++....++. ++.+ ..+++|...+....+ +.++.+++||....+ +...+.
T Consensus 77 ----------------sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~r 140 (764)
T KOG1063|consen 77 ----------------SDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLR 140 (764)
T ss_pred ----------------CCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehhee
Confidence 357899999985544444 4442 355666655554444 567789999985444 111111
Q ss_pred ecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcc
Q 001935 229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (994)
Q Consensus 229 t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~G 308 (994)
- ... -.-|+. ||...+ .+.+
T Consensus 141 f-~~k------------~~ipLc-----L~~~~~---------------------------~~~~--------------- 160 (764)
T KOG1063|consen 141 F-EIK------------EAIPLC-----LAALKN---------------------------NKTF--------------- 160 (764)
T ss_pred h-hhh------------hHhhHH-----Hhhhcc---------------------------CCcE---------------
Confidence 0 000 000111 111100 0110
Q ss_pred cceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCC--CcEEEEeccCCCCeEEEEECCCCC---E
Q 001935 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT--RAIISQFKAHTSPISALCFDPSGT---L 383 (994)
Q Consensus 309 i~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s--~~~i~~~~aHtspIsaLaFSPdGt---l 383 (994)
.++-++.+..|.|+.... -+.+..+++|+..|..|+|...|. +
T Consensus 161 --------------------------------lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~ 208 (764)
T KOG1063|consen 161 --------------------------------LLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLL 208 (764)
T ss_pred --------------------------------EEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEE
Confidence 111223344444444332 247789999999999999998776 7
Q ss_pred EEEEEcCCCeEEEEeCCCCcccCCC-C----CCccccCCcceEEEEE---------ecccccccEEEEEEccCCCEEEEE
Q 001935 384 LVTASVYGNNINIFRIMPSCMRSGS-G----NHKYDWNSSHVHLYKL---------HRGITSATIQDICFSHYSQWIAIV 449 (994)
Q Consensus 384 LATAS~dGt~IrVwdi~p~~~~~~s-G----~~~~~~~~s~~~l~~L---------~RG~t~a~I~sIaFSpDg~~LAsg 449 (994)
|||+|. ++.||||.|....+.... . +...+ ......+.++ .-||+ ..|+++.|+|++..|.++
T Consensus 209 laS~SQ-D~yIRiW~i~~~~~~~~~~~e~~~t~~~~-~~~f~~l~~i~~~is~eall~GHe-DWV~sv~W~p~~~~LLSA 285 (764)
T KOG1063|consen 209 LASSSQ-DRYIRIWRIVLGDDEDSNEREDSLTTLSN-LPVFMILEEIQYRISFEALLMGHE-DWVYSVWWHPEGLDLLSA 285 (764)
T ss_pred EEecCC-ceEEEEEEEEecCCccccccccccccccC-CceeeeeeeEEEEEehhhhhcCcc-cceEEEEEccchhhheec
Confidence 888887 788999998653100000 0 00001 1122223222 23654 679999999999999999
Q ss_pred eCCCeEEEEecCCC
Q 001935 450 SSKGTCHVFVLSPF 463 (994)
Q Consensus 450 S~dGTVhIw~I~~~ 463 (994)
|.|.|+.||+-...
T Consensus 286 SaDksmiiW~pd~~ 299 (764)
T KOG1063|consen 286 SADKSMIIWKPDEN 299 (764)
T ss_pred ccCcceEEEecCCc
Confidence 99999999986554
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=7.6e-09 Score=127.11 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=81.0
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCC--CeEEEEECCCC-CEEEEEEcCCC--eEEEEeCCCCcccCCCCCCccccC
Q 001935 342 GADMDNAGIVVVKDFVTRAIISQFKAHTS--PISALCFDPSG-TLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWN 416 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~~~i~~~~aHts--pIsaLaFSPdG-tlLATAS~dGt--~IrVwdi~p~~~~~~sG~~~~~~~ 416 (994)
++++..+|.+.|||+...+.+..|..|.. -++.|+|+|++ +.|++|+.+++ +|.+||++.. .
T Consensus 177 LAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a-------s------ 243 (1049)
T KOG0307|consen 177 LASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA-------S------ 243 (1049)
T ss_pred hhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-------C------
Confidence 34667889999999999988888887754 48899999998 57888887765 6999998631 0
Q ss_pred CcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEecCC
Q 001935 417 SSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 417 ~s~~~l~~L~RG~t~a~I~sIaFSpDg-~~LAsgS~dGTVhIw~I~~ 462 (994)
..+.+| +||. ..|.+|+|++.+ ++|++++.|+.|.+|+.+.
T Consensus 244 ---sP~k~~-~~H~-~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 244 ---SPLKIL-EGHQ-RGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred ---Cchhhh-cccc-cceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 133444 4543 458999999865 9999999999999999877
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.85 E-value=3.6e-06 Score=89.30 Aligned_cols=223 Identities=17% Similarity=0.227 Sum_probs=147.4
Q ss_pred Ee-cCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccC
Q 001935 81 GY-QNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDG 159 (994)
Q Consensus 81 Gy-~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g 159 (994)
+. ++.+++||+.........+..|...|..+.+.|+. ..++. ...
T Consensus 130 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~~-~~~-------------------- 175 (466)
T COG2319 130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-------------KLLAS-GSS-------------------- 175 (466)
T ss_pred CCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-------------CEEEe-cCC--------------------
Confidence 44 34589999954245667778888999999988765 13332 110
Q ss_pred CcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecCC---eEEE-EeCCeEEEEECCCCceeE-EEeecCCc
Q 001935 160 MMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPR---IVAV-GLATQIYCFDALTLENKF-SVLTYPVP 233 (994)
Q Consensus 160 ~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~S~V~sV~~S~~---iLAV-gl~~~I~IwDa~Tle~l~-tL~t~p~p 233 (994)
.++.+++|++.++..+..+.. ...|..+++++. +++. +.+..|++||..+.+... .+..+...
T Consensus 176 -----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 244 (466)
T COG2319 176 -----------LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244 (466)
T ss_pred -----------CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc
Confidence 136899999999888888876 468999999873 3333 456689999877555544 22222210
Q ss_pred cccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceee
Q 001935 234 QLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTL 313 (994)
Q Consensus 234 ~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktl 313 (994)
. +. . ++|.+.
T Consensus 245 --------------~-~~------~---------------------------~~~~~~---------------------- 254 (466)
T COG2319 245 --------------V-VS------S---------------------------FSPDGS---------------------- 254 (466)
T ss_pred --------------e-eE------e---------------------------ECCCCC----------------------
Confidence 0 00 0 111110
Q ss_pred ccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE-EEEeccCCCCeEEEEECCCCCEEEEEEcCCC
Q 001935 314 SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI-ISQFKAHTSPISALCFDPSGTLLVTASVYGN 392 (994)
Q Consensus 314 S~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~-i~~~~aHtspIsaLaFSPdGtlLATAS~dGt 392 (994)
.++.+..++.+++||+..... +..+..|..+|.++.|+|++..+++++.+ .
T Consensus 255 ---------------------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d-~ 306 (466)
T COG2319 255 ---------------------------LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD-G 306 (466)
T ss_pred ---------------------------EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCC-C
Confidence 011346789999999987664 55557899999999999999999998887 4
Q ss_pred eEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-cccccccEEEEEEccCCCEEEEE-eCCCeEEEEecCCCC
Q 001935 393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFG 464 (994)
Q Consensus 393 ~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~-RG~t~a~I~sIaFSpDg~~LAsg-S~dGTVhIw~I~~~g 464 (994)
.+++|++... ....... .++. ..|..+.|++++..++.+ ..|+++.+|++....
T Consensus 307 ~~~~~~~~~~-----------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 307 TVRLWDLETG-----------------KLLSSLTLKGHE-GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred cEEEEEcCCC-----------------ceEEEeeecccC-CceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 5999987531 1222221 2332 368999995443566666 688999999987754
No 164
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.81 E-value=1.1e-06 Score=97.77 Aligned_cols=109 Identities=9% Similarity=0.081 Sum_probs=72.2
Q ss_pred ccCCCCeEEEEECCCCcEEE-------EeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccC
Q 001935 344 DMDNAGIVVVKDFVTRAIIS-------QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 416 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~~i~-------~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~ 416 (994)
....++.|.|||+.+...+. .+.... ....++|+|||++|+++...+..|.+|++.+. .|
T Consensus 143 ~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~-~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-----~~------- 209 (330)
T PRK11028 143 PCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA-GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-----HG------- 209 (330)
T ss_pred eeCCCCEEEEEEECCCCcccccCCCceecCCCC-CCceEEECCCCCEEEEEecCCCEEEEEEEeCC-----CC-------
Confidence 34567899999998743221 222222 34679999999999999886777999999631 01
Q ss_pred CcceEEEEEeccc----ccccEEEEEEccCCCEEEEEeC-CCeEEEEecCCCCCC
Q 001935 417 SSHVHLYKLHRGI----TSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGGD 466 (994)
Q Consensus 417 ~s~~~l~~L~RG~----t~a~I~sIaFSpDg~~LAsgS~-dGTVhIw~I~~~gg~ 466 (994)
....+.++.... .......|+|+||+++|.++.. +++|.||+++..++.
T Consensus 210 -~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 210 -EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred -CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence 112333332110 0112346999999999999854 689999999876543
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.80 E-value=1.3e-07 Score=107.05 Aligned_cols=129 Identities=19% Similarity=0.282 Sum_probs=99.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~-G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
.++|+|-|+...|+++ .+++|+.|..+ .+++||++ .+++..++..|.+.|.++++-|.-
T Consensus 239 ~~gHTdavl~Ls~n~~------~~nVLaSgsaD~TV~lWD~~-~g~p~~s~~~~~k~Vq~l~wh~~~------------- 298 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRN------FRNVLASGSADKTVKLWDVD-TGKPKSSITHHGKKVQTLEWHPYE------------- 298 (463)
T ss_pred cccchHHHHHHHhccc------cceeEEecCCCceEEEEEcC-CCCcceehhhcCCceeEEEecCCC-------------
Confidence 4578888988888863 47899999876 59999995 688999999999999999988642
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCC-CeEEEEEeCCCcEEEEEecC---CeEE
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS-HCYEHVLRFRSSVCMVRCSP---RIVA 206 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlkt-ge~V~tL~f~S~V~sV~~S~---~iLA 206 (994)
|.+++ +| + ++++|++.|.+. .+.-..++|.+.|-.|++++ ....
T Consensus 299 p~~LL-sG---------------------s----------~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 299 PSVLL-SG---------------------S----------YDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFF 346 (463)
T ss_pred ceEEE-ec---------------------c----------ccceEEeeeccCccccCceEEeccceEEEEecCCCceeEE
Confidence 33343 21 1 368999999994 34445678999999999987 3555
Q ss_pred EEe-CCeEEEEECCCC-ceeEEEeecCC
Q 001935 207 VGL-ATQIYCFDALTL-ENKFSVLTYPV 232 (994)
Q Consensus 207 Vgl-~~~I~IwDa~Tl-e~l~tL~t~p~ 232 (994)
+++ ++.+|-||++.+ ++++++..|..
T Consensus 347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~ 374 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPGKPVWTLKAHDD 374 (463)
T ss_pred EecCCceEEeeecCCCCCceeEEEeccC
Confidence 555 557999999987 77888887754
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.79 E-value=1.9e-08 Score=110.41 Aligned_cols=101 Identities=20% Similarity=0.327 Sum_probs=87.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceE
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~ 421 (994)
+.++.-|.|+|.|..+++....+++|...|+.|.|.|+- +||++||. ++.||+|+|... .+
T Consensus 109 a~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~Sk-D~svRlwnI~~~-----------------~C 170 (385)
T KOG1034|consen 109 AAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASK-DHSVRLWNIQTD-----------------VC 170 (385)
T ss_pred EeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecC-CceEEEEeccCC-----------------eE
Confidence 456689999999999999999999999999999999986 58889998 688999999742 46
Q ss_pred EEEEe--cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 422 LYKLH--RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 422 l~~L~--RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
+..|- .| |+..|.++.|++||.+||+++.|.++++|.|+.
T Consensus 171 v~VfGG~eg-HrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 171 VAVFGGVEG-HRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred EEEeccccc-ccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 66652 23 456899999999999999999999999999984
No 167
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=6.1e-07 Score=108.42 Aligned_cols=286 Identities=13% Similarity=0.125 Sum_probs=162.7
Q ss_pred CCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCC
Q 001935 73 VFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (994)
Q Consensus 73 ~~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~ 152 (994)
.+.+.|++.+.+-++||.+ .++++...+..|-.++..+.++|.+.. -.++.+++
T Consensus 26 nD~k~l~~~~~~~V~VyS~-~Tg~~i~~l~~~~a~l~s~~~~~~~~~----------~~~~~~~s--------------- 79 (792)
T KOG1963|consen 26 NDAKFLFLCTGNFVKVYST-ATGECITSLEDHTAPLTSVIVLPSSEN----------ANYLIVCS--------------- 79 (792)
T ss_pred cCCcEEEEeeCCEEEEEec-chHhhhhhcccccCccceeeecCCCcc----------ceEEEEEe---------------
Confidence 4678999999999999998 578888999999999999999987521 01233322
Q ss_pred ccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCC-----eEE-EEeCCeEEEEECCCCc---e
Q 001935 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR-----IVA-VGLATQIYCFDALTLE---N 223 (994)
Q Consensus 153 ~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~~-----iLA-Vgl~~~I~IwDa~Tle---~ 223 (994)
.+++|++||...++.++++.-.-+|.+....+. .++ ++.+ ...++.....+ .
T Consensus 80 ------------------l~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~-~~~~~~~~s~~~~~q 140 (792)
T KOG1963|consen 80 ------------------LDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVE-DYSILTTFSKKLSKQ 140 (792)
T ss_pred ------------------cCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecc-cceeeeecccccccc
Confidence 247899999999999999988777776665431 122 2222 22222211111 1
Q ss_pred --eEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhh
Q 001935 224 --KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH 301 (994)
Q Consensus 224 --l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~ds 301 (994)
.+.+.+...+ ..+... .... ++-|++..... ...+++.-.+.
T Consensus 141 ~~~~~~~t~~~~------~~d~~~---~~~~-~~~I~~~~~ge--------------------------~~~i~~~~~~~ 184 (792)
T KOG1963|consen 141 SSRFVLATFDSA------KGDFLK---EHQE-PKSIVDNNSGE--------------------------FKGIVHMCKIH 184 (792)
T ss_pred eeeeEeeecccc------chhhhh---hhcC-CccEEEcCCce--------------------------EEEEEEeeeEE
Confidence 1111111110 000000 0000 23333332210 00000000000
Q ss_pred hhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCC--C--cEEEEeccCCCCeEEEEE
Q 001935 302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT--R--AIISQFKAHTSPISALCF 377 (994)
Q Consensus 302 sk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s--~--~~i~~~~aHtspIsaLaF 377 (994)
+..+..+- +....+...+.-.........++...+ +++++.||.|.||.--. + .....|.=|..+|.+|+|
T Consensus 185 ~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~----~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f 259 (792)
T KOG1963|consen 185 IYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERY----LAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF 259 (792)
T ss_pred EEEecccc-eeeccchhhhhhcccceeEEeccccce----EEEeccCCcEEEEeccccccccccceEEEecccccceeEE
Confidence 00000000 000011000000000001122233332 35778899999996543 2 245677789999999999
Q ss_pred CCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 001935 378 DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (994)
Q Consensus 378 SPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhI 457 (994)
++||.+|.||+..| ++-+|++... ..+.|-+| .++|..+.+|||+...+....|..||+
T Consensus 260 S~~G~~LlSGG~E~-VLv~Wq~~T~---------------~kqfLPRL-----gs~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 260 SSDGAYLLSGGREG-VLVLWQLETG---------------KKQFLPRL-----GSPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred ecCCceEeecccce-EEEEEeecCC---------------Cccccccc-----CCeeEEEEEcCCCCeEEEEecCceEEE
Confidence 99999999999965 6889998642 11233333 468999999999999999999999999
Q ss_pred EecCCCCC
Q 001935 458 FVLSPFGG 465 (994)
Q Consensus 458 w~I~~~gg 465 (994)
-.......
T Consensus 319 i~~~dl~~ 326 (792)
T KOG1963|consen 319 IKASDLEI 326 (792)
T ss_pred Eeccchhh
Confidence 88755443
No 168
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=3.3e-08 Score=108.06 Aligned_cols=59 Identities=32% Similarity=0.454 Sum_probs=54.3
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCC
Q 001935 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (994)
++.|..+|.|.|||+.+..+-..|.||..||.+||||+||++|+|+|. +..|.+||+..
T Consensus 38 lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~-D~si~lwDl~~ 96 (405)
T KOG1273|consen 38 LAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR-DWSIKLWDLLK 96 (405)
T ss_pred eeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC-CceeEEEeccC
Confidence 456789999999999999988999999999999999999999999999 56799999964
No 169
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.74 E-value=3.5e-08 Score=117.81 Aligned_cols=280 Identities=16% Similarity=0.194 Sum_probs=176.9
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 51 ~~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
+.-+|..-|..|.||+ .++.++.||++- ++||.. +++.+...+.+|.|.++.+++.-+
T Consensus 185 rLlgH~naVyca~fDr-------tg~~Iitgsdd~lvKiwS~-et~~~lAs~rGhs~ditdlavs~~------------- 243 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDR-------TGRYIITGSDDRLVKIWSM-ETARCLASCRGHSGDITDLAVSSN------------- 243 (1113)
T ss_pred HHHhhhhheeeeeecc-------ccceEeecCccceeeeeec-cchhhhccCCCCccccchhccchh-------------
Confidence 4567888999999997 567899999987 799997 467788888899999998876522
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEE
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVG 208 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~~iLAVg 208 (994)
+-++|. + +.+..|++|-+.++..|..|..+ +.|.+|+|+|+. +.+
T Consensus 244 n~~iaa-----------------------a----------S~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-sss 289 (1113)
T KOG0644|consen 244 NTMIAA-----------------------A----------SNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-SSS 289 (1113)
T ss_pred hhhhhh-----------------------c----------ccCceEEEEecCCCchHHHHhccccceeeeccCccc-cCC
Confidence 122231 1 12578999999999999999654 699999999965 566
Q ss_pred eCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCC
Q 001935 209 LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (994)
Q Consensus 209 l~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp 288 (994)
.++++++||+. ++.+. ..|.|... ..+ . -.-.+-+...|-+|... +.++
T Consensus 290 ~dgt~~~wd~r-~~~~~---y~prp~~~---~~~-~-~~~s~~~~~~~~~f~Tg--------s~d~-------------- 338 (1113)
T KOG0644|consen 290 DDGTCRIWDAR-LEPRI---YVPRPLKF---TEK-D-LVDSILFENNGDRFLTG--------SRDG-------------- 338 (1113)
T ss_pred CCCceEecccc-ccccc---cCCCCCCc---ccc-c-ceeeeeccccccccccc--------cCCc--------------
Confidence 77899999987 33222 22333100 000 0 00011112223333221 1100
Q ss_pred CCCceEEEeehhhhhhhhccccee-eccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 001935 289 GGSSLVARYAMEHSKQFAAGLSKT-LSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (994)
Q Consensus 289 ~~gsLVa~~A~dssk~la~Gi~kt-lS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a 367 (994)
.+. .+++-.-.++. +..|.+. ..+. .. ...++-.+-.+.+|.+.++..++.+.+
T Consensus 339 -----ea~-----n~e~~~l~~~~~~lif~t~-ssd~-------------~~-~~~~ar~~~~~~vwnl~~g~l~H~l~g 393 (1113)
T KOG0644|consen 339 -----EAR-----NHEFEQLAWRSNLLIFVTR-SSDL-------------SS-IVVTARNDHRLCVWNLYTGQLLHNLMG 393 (1113)
T ss_pred -----ccc-----cchhhHhhhhccceEEEec-cccc-------------cc-cceeeeeeeEeeeeecccchhhhhhcc
Confidence 000 00000000000 0001000 0000 00 112345677889999999999999999
Q ss_pred CCCCeEEEEECCCCCEEE-EEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 001935 368 HTSPISALCFDPSGTLLV-TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (994)
Q Consensus 368 HtspIsaLaFSPdGtlLA-TAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (994)
|..++..|.|+|=...+| +|+.+|. +.|||+.. |. -...|. -| ...+.+.+||+||+.+
T Consensus 394 hsd~~yvLd~Hpfn~ri~msag~dgs-t~iwdi~e-------g~--------pik~y~--~g--h~kl~d~kFSqdgts~ 453 (1113)
T KOG0644|consen 394 HSDEVYVLDVHPFNPRIAMSAGYDGS-TIIWDIWE-------GI--------PIKHYF--IG--HGKLVDGKFSQDGTSI 453 (1113)
T ss_pred cccceeeeeecCCCcHhhhhccCCCc-eEeeeccc-------CC--------cceeee--cc--cceeeccccCCCCceE
Confidence 999999999999887665 6777666 78999953 31 123333 45 2467889999999999
Q ss_pred EEEeCCCeEEEEecC
Q 001935 447 AIVSSKGTCHVFVLS 461 (994)
Q Consensus 447 AsgS~dGTVhIw~I~ 461 (994)
+..-+-|.+.|+...
T Consensus 454 ~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 454 ALSDDHGQLYILGTG 468 (1113)
T ss_pred ecCCCCCceEEeccC
Confidence 999999998887643
No 170
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=1.4e-07 Score=104.34 Aligned_cols=103 Identities=20% Similarity=0.285 Sum_probs=77.3
Q ss_pred CCCeEEEEECCCCcE-E-EEeccCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 001935 347 NAGIVVVKDFVTRAI-I-SQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~-i-~~~~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~ 423 (994)
.+-.|.+||+...+. + .-+..|...|+.|+|.|+. .+|+|||.||- |+|||+.-.. ..-.++.
T Consensus 141 s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL-vnlfD~~~d~-------------EeDaL~~ 206 (376)
T KOG1188|consen 141 SDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL-VNLFDTKKDN-------------EEDALLH 206 (376)
T ss_pred CceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce-EEeeecCCCc-------------chhhHHH
Confidence 455799999998664 4 4456899999999999976 69999999775 9999996320 0012333
Q ss_pred EEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEecCCCCCC
Q 001935 424 KLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGD 466 (994)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg-~~LAsgS~dGTVhIw~I~~~gg~ 466 (994)
.+- +.+.|-.|.|..++ +.|.+-+..+|..+|+++.....
T Consensus 207 viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 207 VIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred hhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 332 33469999999988 45888999999999999886543
No 171
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=1.9e-07 Score=99.57 Aligned_cols=114 Identities=20% Similarity=0.373 Sum_probs=90.6
Q ss_pred ccccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEECC--CCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccC
Q 001935 342 GADMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDP--SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 416 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~---~~i~~~~aHtspIsaLaFSP--dGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~ 416 (994)
+++++.|++|+|++..+. +.+..|.+|.+||..++|-. -|++||++|-||+ +.||.-.. | .|
T Consensus 26 lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk-VIiWke~~-------g----~w- 92 (299)
T KOG1332|consen 26 LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK-VIIWKEEN-------G----RW- 92 (299)
T ss_pred eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce-EEEEecCC-------C----ch-
Confidence 467889999999999864 47899999999999999987 8999999999887 67998642 2 13
Q ss_pred CcceEEEEEecccccccEEEEEEccC--CCEEEEEeCCCeEEEEecCCCCCCcc---ccccc
Q 001935 417 SSHVHLYKLHRGITSATIQDICFSHY--SQWIAIVSSKGTCHVFVLSPFGGDSG---FQTLS 473 (994)
Q Consensus 417 ~s~~~l~~L~RG~t~a~I~sIaFSpD--g~~LAsgS~dGTVhIw~I~~~gg~~~---~~~H~ 473 (994)
.++|+. ..+.+.|++|+|.|. |-.||++|+||+|.|+.....|+-.+ ..+|.
T Consensus 93 ---~k~~e~--~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~ 149 (299)
T KOG1332|consen 93 ---TKAYEH--AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE 149 (299)
T ss_pred ---hhhhhh--hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc
Confidence 234443 346678999999985 67999999999999999988755432 34563
No 172
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.71 E-value=1.6e-07 Score=109.47 Aligned_cols=94 Identities=15% Similarity=0.250 Sum_probs=72.6
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
+.+.+|-+|++||+.+.+....|.+|+..|..++|||||+++||...||+ ||||+-.. + -+.+
T Consensus 694 a~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs-------~---------e~pv 756 (1012)
T KOG1445|consen 694 AVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRS-------R---------EQPV 756 (1012)
T ss_pred hhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCC-------C---------CCcc
Confidence 45678999999999999999999999999999999999999999999887 99998542 1 0234
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCe
Q 001935 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGT 454 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGT 454 (994)
|+-. |.....=-.|.|-.||++|.+.+.|..
T Consensus 757 ~Eg~-gpvgtRgARi~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 757 YEGK-GPVGTRGARILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred ccCC-CCccCcceeEEEEecCcEEEEeccccc
Confidence 4321 111111134778899999999888753
No 173
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.71 E-value=3e-07 Score=98.92 Aligned_cols=98 Identities=18% Similarity=0.216 Sum_probs=72.6
Q ss_pred cccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCc
Q 001935 343 ADMDNAGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~----~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s 418 (994)
++++.+-.+..|.++... ....+.--.-.|+-+.+-|||+.||||+.||+ ||||.-+. +
T Consensus 221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~R-iRVyswrt-------l--------- 283 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHR-IRVYSWRT-------L--------- 283 (323)
T ss_pred cCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCc-EEEEEecc-------C---------
Confidence 355666677888876431 11222222335888999999999999999887 99999753 2
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 001935 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 419 ~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I 460 (994)
+.|-.|.. |.+.|+++||+||+..+|++|.|++|-+|++
T Consensus 284 -~pLAVLky--Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 -NPLAVLKY--HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred -Cchhhhhh--hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 23444422 4578999999999999999999999999986
No 174
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.70 E-value=1.5e-05 Score=87.95 Aligned_cols=119 Identities=18% Similarity=0.300 Sum_probs=79.6
Q ss_pred cccCCCCe-EEEEECCCCcEEEEecc--CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccc-cC--
Q 001935 343 ADMDNAGI-VVVKDFVTRAIISQFKA--HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD-WN-- 416 (994)
Q Consensus 343 as~s~dG~-V~VwDl~s~~~i~~~~a--HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~-~~-- 416 (994)
|+++..|+ |||||..+|+.+..|+- -...|.+|+|||++.+||.+|.+|| ++||.+.+.......- .+.. +.
T Consensus 197 ATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT-lHiF~l~~~~~~~~~~-SSl~~~~~~ 274 (346)
T KOG2111|consen 197 ATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT-LHIFSLRDTENTEDES-SSLSFKRLV 274 (346)
T ss_pred EEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe-EEEEEeecCCCCcccc-ccccccccc
Confidence 45667777 99999999999999984 3357999999999999999999998 8999997532100000 0000 00
Q ss_pred -----CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 417 -----SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 417 -----~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
.+.+-+.+++ .......-++|-.+.+-++....||+-+=+.+.+..+
T Consensus 275 lpky~~S~wS~~~f~--l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~~~ 326 (346)
T KOG2111|consen 275 LPKYFSSEWSFAKFQ--LPQGTQCIIAFGSETNTVIAICADGSYYKFKFDPKNG 326 (346)
T ss_pred cchhcccceeEEEEE--ccCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccccc
Confidence 0001111221 0122345688998877788888889988888877633
No 175
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=2e-07 Score=103.04 Aligned_cols=245 Identities=13% Similarity=0.154 Sum_probs=151.6
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCc
Q 001935 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (994)
Q Consensus 75 ~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~ 153 (994)
...+++|+.+| +++||.. +++..+.++.+.+.++.++|+-.. .|-++.+++
T Consensus 40 e~~vav~lSngsv~lyd~~-tg~~l~~fk~~~~~~N~vrf~~~d------------s~h~v~s~s--------------- 91 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKG-TGQLLEEFKGPPATTNGVRFISCD------------SPHGVISCS--------------- 91 (376)
T ss_pred ceeEEEEecCCeEEEEecc-chhhhheecCCCCcccceEEecCC------------CCCeeEEec---------------
Confidence 36899999987 9999996 477888899888888888877321 122233221
Q ss_pred cccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC----cEEEEE--ecCCeEEEEeCC-----eEEEEECCCCc
Q 001935 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS----SVCMVR--CSPRIVAVGLAT-----QIYCFDALTLE 222 (994)
Q Consensus 154 ~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S----~V~sV~--~S~~iLAVgl~~-----~I~IwDa~Tle 222 (994)
++++||+||+++...+..+.+.. +-.+++ |+.++++.++.. .+++||++.-+
T Consensus 92 -----------------sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q 154 (376)
T KOG1188|consen 92 -----------------SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ 154 (376)
T ss_pred -----------------cCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc
Confidence 35799999999998888887642 223444 456788887743 59999998655
Q ss_pred e-eEEEee-cCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehh
Q 001935 223 N-KFSVLT-YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME 300 (994)
Q Consensus 223 ~-l~tL~t-~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~d 300 (994)
. +..+.. |.. .++.+-|.|.+-.
T Consensus 155 q~l~~~~eSH~D-----------------------------------------------DVT~lrFHP~~pn-------- 179 (376)
T KOG1188|consen 155 QLLRQLNESHND-----------------------------------------------DVTQLRFHPSDPN-------- 179 (376)
T ss_pred chhhhhhhhccC-----------------------------------------------cceeEEecCCCCC--------
Confidence 3 222211 110 0000111111000
Q ss_pred hhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc---EEEEeccCCCCeEEEEE
Q 001935 301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IISQFKAHTSPISALCF 377 (994)
Q Consensus 301 ssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~---~i~~~~aHtspIsaLaF 377 (994)
.+++++.||.|.|||+.... .+.+.--|.+.|..+.|
T Consensus 180 ----------------------------------------lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw 219 (376)
T KOG1188|consen 180 ----------------------------------------LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGW 219 (376)
T ss_pred ----------------------------------------eEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeee
Confidence 13467889999999997643 33334457788999999
Q ss_pred CCCC-CEEEEEEcCCCeEEEEeCCCCccc-CC------------------------CCC------CccccC---------
Q 001935 378 DPSG-TLLVTASVYGNNINIFRIMPSCMR-SG------------------------SGN------HKYDWN--------- 416 (994)
Q Consensus 378 SPdG-tlLATAS~dGt~IrVwdi~p~~~~-~~------------------------sG~------~~~~~~--------- 416 (994)
..+| +.+.+-+..++ +.+|++...-.. .. .|. ...+-.
T Consensus 220 ~~~~ykrI~clTH~Et-f~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~ 298 (376)
T KOG1188|consen 220 LSKKYKRIMCLTHMET-FAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVD 298 (376)
T ss_pred ecCCcceEEEEEccCc-eeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeee
Confidence 9888 33555565455 788887542000 00 000 000000
Q ss_pred ----CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 417 ----SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 417 ----~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
....++..|++| +...|.++.|.--+..|.+|+.||-+.+|+.+
T Consensus 299 ~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 299 TSSGSLLTEPAILQGG-HEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cccccccCccccccCC-cHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 001223334444 44678999999999999999999999999973
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.69 E-value=6.3e-08 Score=108.74 Aligned_cols=138 Identities=15% Similarity=0.151 Sum_probs=98.8
Q ss_pred ccccCCCCeEEEEECCCC---------cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCc
Q 001935 342 GADMDNAGIVVVKDFVTR---------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK 412 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~---------~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~ 412 (994)
+++++.|..|+||-+... +-+..|..|+..|+++.|+|+|.+||||+.+| .|.+|......... ....
T Consensus 29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g-~v~lWk~~~~~~~~--~d~e 105 (434)
T KOG1009|consen 29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG-EVFLWKQGDVRIFD--ADTE 105 (434)
T ss_pred eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc-eEEEEEecCcCCcc--ccch
Confidence 457788999999988643 24567788999999999999999999999855 58999865210000 0000
Q ss_pred cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcccccccCCCCCCccCC
Q 001935 413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 483 (994)
Q Consensus 413 ~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~s~~~~~~~~p 483 (994)
.+.....+.+.+..|| +...|++++|+||++++++++.|.++++|++........+.-|..-+-+..+.|
T Consensus 106 ~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp 175 (434)
T KOG1009|consen 106 ADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP 175 (434)
T ss_pred hhhCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch
Confidence 1111222455555577 457899999999999999999999999999998766666666654444444444
No 177
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.69 E-value=1.3e-05 Score=89.85 Aligned_cols=195 Identities=17% Similarity=0.282 Sum_probs=126.1
Q ss_pred EEEEEECCCCeEEEEEeCC----CcEEEEEecCC--eEEEEe---CCeEEEEECCCCceeEEEeecCCccccCCCccccc
Q 001935 174 AVRFYSFQSHCYEHVLRFR----SSVCMVRCSPR--IVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGIN 244 (994)
Q Consensus 174 tVrLWDlktge~V~tL~f~----S~V~sV~~S~~--iLAVgl---~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vn 244 (994)
.|.|||+++=+.+|+|.-. ..+.++.+|.. .||.=. .+.|+|||+.+++..-+|..|..+
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~----------- 175 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP----------- 175 (391)
T ss_pred cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc-----------
Confidence 5999999999999999643 35777777774 777522 347999999999988888877542
Q ss_pred cCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCC
Q 001935 245 VGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (994)
Q Consensus 245 v~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~ 324 (994)
+| .|||..+ |.+
T Consensus 176 -----lA----alafs~~----------------------------G~l------------------------------- 187 (391)
T KOG2110|consen 176 -----LA----ALAFSPD----------------------------GTL------------------------------- 187 (391)
T ss_pred -----ee----EEEECCC----------------------------CCE-------------------------------
Confidence 11 1333321 112
Q ss_pred CCCCccCCCccccccccccccCCCCe-EEEEECCCCcEEEEeccCCC--CeEEEEECCCCCEEEEEEcCCCeEEEEeCCC
Q 001935 325 SSSPVSPNSVWKVGRHAGADMDNAGI-VVVKDFVTRAIISQFKAHTS--PISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 325 s~s~~s~s~~~k~g~~~~as~s~dG~-V~VwDl~s~~~i~~~~aHts--pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (994)
+|+++..|+ |||+++.+++.+..|+--+. .|.+|+|+||+++|+.+|..++ |+||.+..
T Consensus 188 -----------------lATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT-VHiFKL~~ 249 (391)
T KOG2110|consen 188 -----------------LATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET-VHIFKLEK 249 (391)
T ss_pred -----------------EEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe-EEEEEecc
Confidence 123455565 89999999999999986554 5789999999999999998776 99999864
Q ss_pred CcccCCCC--CCccccCC------------cceEEEEEeccccc-----ccE-EEEEEc--cCCCEEEEEeCCCeEEEEe
Q 001935 402 SCMRSGSG--NHKYDWNS------------SHVHLYKLHRGITS-----ATI-QDICFS--HYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 402 ~~~~~~sG--~~~~~~~~------------s~~~l~~L~RG~t~-----a~I-~sIaFS--pDg~~LAsgS~dGTVhIw~ 459 (994)
.. .+... .....|.. .........|.+-. +.. ..++|+ ++...+.+++.||....|.
T Consensus 250 ~~-~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~ 328 (391)
T KOG2110|consen 250 VS-NNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYR 328 (391)
T ss_pred cc-cCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEE
Confidence 31 00000 00000100 00001111121111 111 234455 5788999999999999999
Q ss_pred cCCC-CCC
Q 001935 460 LSPF-GGD 466 (994)
Q Consensus 460 I~~~-gg~ 466 (994)
+++. ||+
T Consensus 329 l~~~~gGe 336 (391)
T KOG2110|consen 329 LPPKEGGE 336 (391)
T ss_pred cCCCCCce
Confidence 9985 554
No 178
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.68 E-value=1.1e-06 Score=95.69 Aligned_cols=176 Identities=19% Similarity=0.313 Sum_probs=114.7
Q ss_pred CCEEEEEECCCCeE--EEE--EeCCCcEEEEEecC---CeEE-EEeCCeEEEEECCCCceeEEEeecCCccccCCCcccc
Q 001935 172 PTAVRFYSFQSHCY--EHV--LRFRSSVCMVRCSP---RIVA-VGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGI 243 (994)
Q Consensus 172 p~tVrLWDlktge~--V~t--L~f~S~V~sV~~S~---~iLA-Vgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~v 243 (994)
++|..|||+.+|.. |+| +-+...|++|+|.+ +++| ||.|+.+++||++.++.-..+...|.|.
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~--------- 242 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPS--------- 242 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCC---------
Confidence 68999999999732 333 45778999999987 4555 6778899999999988655554444420
Q ss_pred ccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCC
Q 001935 244 NVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 323 (994)
Q Consensus 244 nv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~ 323 (994)
...+-|+ |+. |. | +|.
T Consensus 243 ---~pLlRLs-------------wnk-----qD-----------p--------------------------nym------ 258 (364)
T KOG0290|consen 243 ---TPLLRLS-------------WNK-----QD-----------P--------------------------NYM------ 258 (364)
T ss_pred ---Ccceeec-------------cCc-----CC-----------c--------------------------hHH------
Confidence 0001110 110 00 0 000
Q ss_pred CCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCCC
Q 001935 324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 324 ~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~-~~i~~~~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p 401 (994)
+ ..+.....|.|.|+... ..++.|+.|+..|+++++.|.. ..|+||+. +...-|||+..
T Consensus 259 ---------------A---Tf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD-D~qaliWDl~q 319 (364)
T KOG0290|consen 259 ---------------A---TFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD-DCQALIWDLQQ 319 (364)
T ss_pred ---------------h---hhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC-cceEEEEeccc
Confidence 0 01234557999999875 5789999999999999999855 68999987 66789999964
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCC
Q 001935 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKG 453 (994)
Q Consensus 402 ~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSp-Dg~~LAsgS~dG 453 (994)
.+..+ + .+ --..|+ . .+.|..|.|++ ...|||++..+.
T Consensus 320 ~~~~~--~---~d----Pilay~--a---~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 320 MPREN--G---ED----PILAYT--A---GGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred ccccC--C---CC----chhhhh--c---cceeeeeeecccCCCEEEEEecCe
Confidence 31101 1 00 012333 2 24799999994 678999998663
No 179
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=5.3e-06 Score=96.65 Aligned_cols=95 Identities=12% Similarity=0.113 Sum_probs=58.3
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 350 ~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dG--t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
.|.++|+.+++.. .+..+......++|||||++||..+.++ ..|.+|++.. | .+..|..
T Consensus 317 ~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-------g-----------~~~~Lt~ 377 (433)
T PRK04922 317 QIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-------G-----------SVRTLTP 377 (433)
T ss_pred eEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-------C-----------CeEECCC
Confidence 3555666655432 2222333445689999999999876543 3588888743 2 1223333
Q ss_pred ccccccEEEEEEccCCCEEEEEeCC-CeEEEEecCCCCCC
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGGD 466 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~d-GTVhIw~I~~~gg~ 466 (994)
+. .....+|||||++|+..+.+ |.-+||.++..++.
T Consensus 378 ~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 378 GS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 31 24567999999999887765 45566666555543
No 180
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=1.1e-05 Score=94.05 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=48.4
Q ss_pred eEEEEECCCCCEEEEEEcCCC--eEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 001935 372 ISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (994)
Q Consensus 372 IsaLaFSPdGtlLATAS~dGt--~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsg 449 (994)
....+|||||++||.++..+. .|.+|++.. | ....+..+ ....+.+|+|||++|+.+
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-------g-----------~~~~lt~~---~~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-------G-----------QVTALTDT---TRDESPSFAPNGRYILYA 388 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCC-------C-----------CeEEccCC---CCccCceECCCCCEEEEE
Confidence 345789999999998776543 588888743 2 11223222 224678999999999998
Q ss_pred eCCC-eEEEEecCCCCC
Q 001935 450 SSKG-TCHVFVLSPFGG 465 (994)
Q Consensus 450 S~dG-TVhIw~I~~~gg 465 (994)
+.++ .-.||.+...|.
T Consensus 389 ~~~~g~~~l~~~~~~g~ 405 (427)
T PRK02889 389 TQQGGRSVLAAVSSDGR 405 (427)
T ss_pred EecCCCEEEEEEECCCC
Confidence 8665 445666655443
No 181
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=4.4e-07 Score=102.52 Aligned_cols=74 Identities=23% Similarity=0.326 Sum_probs=62.6
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 001935 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (994)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsg 449 (994)
..|++|+.|+||+++|-++.+|. |-|+++.. .+.+|-..+. |...|+.+.|+||.+++++.
T Consensus 282 ~siSsl~VS~dGkf~AlGT~dGs-Vai~~~~~-----------------lq~~~~vk~a-H~~~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 282 KSISSLAVSDDGKFLALGTMDGS-VAIYDAKS-----------------LQRLQYVKEA-HLGFVTGLTFSPDSRYLASV 342 (398)
T ss_pred CcceeEEEcCCCcEEEEeccCCc-EEEEEece-----------------eeeeEeehhh-heeeeeeEEEcCCcCccccc
Confidence 47999999999999999999776 78999753 2456656554 44579999999999999999
Q ss_pred eCCCeEEEEecCC
Q 001935 450 SSKGTCHVFVLSP 462 (994)
Q Consensus 450 S~dGTVhIw~I~~ 462 (994)
|.+.+++|..|.-
T Consensus 343 Ss~~~~~v~~l~v 355 (398)
T KOG0771|consen 343 SSDNEAAVTKLAV 355 (398)
T ss_pred ccCCceeEEEEee
Confidence 9999999999876
No 182
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=2.2e-06 Score=103.77 Aligned_cols=231 Identities=16% Similarity=0.086 Sum_probs=131.6
Q ss_pred CEEEEEECCCCeEEEEEeCC-CcEEEEEecCC------eEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCcccccc
Q 001935 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPR------IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~-S~V~sV~~S~~------iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv 245 (994)
++|+||+..||+|++.|.++ .++..+.+.++ .++..+++.|++||-...+++.++...-.+
T Consensus 37 ~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v------------ 104 (792)
T KOG1963|consen 37 NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPV------------ 104 (792)
T ss_pred CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCce------------
Confidence 68999999999999999876 57887777662 235577889999999999988877642110
Q ss_pred CccceEEcc-----cEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccc
Q 001935 246 GYGPMAVGP-----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 320 (994)
Q Consensus 246 ~~gplAlgp-----RwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l 320 (994)
..+-+.+ +..+|.+... ....+. ++ .+..++.......+......++
T Consensus 105 --~~~~~~~~~a~~s~~~~~s~~~------~~~~~~---------~s-----------~~~~~q~~~~~~~t~~~~~~d~ 156 (792)
T KOG1963|consen 105 --HALVYKPAQADISANVYVSVED------YSILTT---------FS-----------KKLSKQSSRFVLATFDSAKGDF 156 (792)
T ss_pred --eEEEechhHhCccceeEeeccc------ceeeee---------cc-----------cccccceeeeEeeeccccchhh
Confidence 0011100 1122222100 000000 00 0001111111100000000000
Q ss_pred cCCC-CCCCccCCCccccccccccccCCCCeEEEEECCCCcEE----EEeccCCCCeEEEEECCCCCEEEEEEcCCCeEE
Q 001935 321 LPDG-SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII----SQFKAHTSPISALCFDPSGTLLVTASVYGNNIN 395 (994)
Q Consensus 321 ~p~~-s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i----~~~~aHtspIsaLaFSPdGtlLATAS~dGt~Ir 395 (994)
.... ...++..++.+.. ...-.+..+.+|+...+... ..=+-|+-++.+.+|||.|+++|+|..+|+ |.
T Consensus 157 ~~~~~~~~~I~~~~~ge~-----~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr-I~ 230 (792)
T KOG1963|consen 157 LKEHQEPKSIVDNNSGEF-----KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGR-IL 230 (792)
T ss_pred hhhhcCCccEEEcCCceE-----EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCc-EE
Confidence 0000 0112222222111 11124556778888774411 111248888999999999999999999998 99
Q ss_pred EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 396 Vwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
||+---. .+ -. ..-..|++ |.+.|.+++||+||.+|.+|+..|-.-+|.+.+.+
T Consensus 231 vw~d~~~-----~~-----~~---~t~t~lHW--H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 231 VWRDFGS-----SD-----DS---ETCTLLHW--HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred EEecccc-----cc-----cc---ccceEEEe--cccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 9984210 01 01 11234556 34689999999999999999999999999998865
No 183
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.64 E-value=2.1e-06 Score=89.96 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=43.1
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-----CCeEEEEeCC
Q 001935 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-----GNNINIFRIM 400 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~d-----Gt~IrVwdi~ 400 (994)
..|.|.+||..+.+.+..+... .++.++|||||++|+|++.. +..++||+..
T Consensus 123 ~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 123 LNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 4588999999998888777643 47899999999999999864 5568999974
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.64 E-value=1.6e-06 Score=103.83 Aligned_cols=97 Identities=14% Similarity=0.237 Sum_probs=76.5
Q ss_pred CCeEEEEECC-CCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 348 AGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 348 dG~V~VwDl~-s~~~i~~~~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
|-+|+||.-. ....+..+.-|...|.+++|||.- ..+|+++.+|+ |.|||+..... ..+.+.
T Consensus 419 DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iWDLl~~~~---------------~Pv~s~ 482 (555)
T KOG1587|consen 419 DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIWDLLQDDE---------------EPVLSQ 482 (555)
T ss_pred cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehhhhhcccc---------------CCcccc
Confidence 9999999988 667888888899999999999987 57778887776 99999964210 122222
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
..+ ......+.|++.|+.||+|...|++|+|+|..
T Consensus 483 ~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 483 KVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 222 34567889999999999999999999999964
No 185
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.56 E-value=7.9e-07 Score=99.81 Aligned_cols=107 Identities=11% Similarity=0.119 Sum_probs=80.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
.+++.|.+|.||++.+++.+.++. |..-|.+++|+.||.+|+|++. ++.|||||... | ..+
T Consensus 148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck-DKkvRv~dpr~-------~----------~~v 208 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK-DKKVRVIDPRR-------G----------TVV 208 (472)
T ss_pred hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc-cceeEEEcCCC-------C----------cEe
Confidence 356789999999999999888888 9999999999999999999998 56799999754 3 244
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeC---CCeEEEEecCCCCCCccc
Q 001935 423 YKLHRGITSATIQDICFSHYSQWIAIVSS---KGTCHVFVLSPFGGDSGF 469 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~LAsgS~---dGTVhIw~I~~~gg~~~~ 469 (994)
.+- .++..+.-..+-|=-+|..+.+|-+ +..+-||+-.....+..+
T Consensus 209 ~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~ 257 (472)
T KOG0303|consen 209 SEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIAL 257 (472)
T ss_pred eec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCccee
Confidence 444 4555566667778889994444433 346888986655544433
No 186
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.54 E-value=1.8e-07 Score=104.36 Aligned_cols=122 Identities=19% Similarity=0.311 Sum_probs=92.5
Q ss_pred cccCCCCeEEEEECCCCcEE---EEeccCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCc
Q 001935 343 ADMDNAGIVVVKDFVTRAII---SQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i---~~~~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s 418 (994)
.+++..+.|++|...++.-. .-|.+|+..|-.|++||.- ++|||+|.||+ |||||++. +. +
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs-------~~-------~ 292 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRS-------GP-------K 292 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecC-------CC-------c
Confidence 46677788999999887522 4566899999999999976 58999999776 99999963 20 0
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCc---ccccccCCCCCCccCCccCCCcc
Q 001935 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS---GFQTLSSQGGDPYLFPVLSLPWW 490 (994)
Q Consensus 419 ~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~---~~~~H~s~~~~~~~~p~~~lpw~ 490 (994)
-.++.. -.++..|.-|+|+-+-.+||+|++|||++||+|..++... .|..|. .|++++.|-
T Consensus 293 ~~~~~~---kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk--------~pItsieW~ 356 (440)
T KOG0302|consen 293 KAAVST---KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK--------APITSIEWH 356 (440)
T ss_pred cceeEe---eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc--------CCeeEEEec
Confidence 013322 2256689999999998899999999999999998876542 445564 577777774
No 187
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.53 E-value=8.1e-07 Score=93.07 Aligned_cols=93 Identities=15% Similarity=0.300 Sum_probs=71.1
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dG--t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
+..++.|.+||+. .+.+..|. ..+++.|.|||+|++||+|+.++ ..|.+||+.. . ..+
T Consensus 79 g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-------~----------~~i 138 (194)
T PF08662_consen 79 GSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-------K----------KKI 138 (194)
T ss_pred ccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-------C----------EEe
Confidence 4456799999997 56666664 56889999999999999998632 2499999853 1 455
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeC------CCeEEEEecC
Q 001935 423 YKLHRGITSATIQDICFSHYSQWIAIVSS------KGTCHVFVLS 461 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~LAsgS~------dGTVhIw~I~ 461 (994)
.++.. ..+.+++|||||++|++++. |..++||...
T Consensus 139 ~~~~~----~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 139 STFEH----SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ecccc----CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 55432 24689999999999999875 6788999863
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.52 E-value=1.9e-05 Score=89.28 Aligned_cols=93 Identities=18% Similarity=0.311 Sum_probs=64.1
Q ss_pred EEEEECCC-CcEEEEeccCCCCeEEEEECC------------------CCCEEEEEEcCCCeEEEEeCCCCcccCCCCCC
Q 001935 351 VVVKDFVT-RAIISQFKAHTSPISALCFDP------------------SGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411 (994)
Q Consensus 351 V~VwDl~s-~~~i~~~~aHtspIsaLaFSP------------------dGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~ 411 (994)
..+|+-.. .+.++++..-..|..++.|+| -+..+|.|.. ..+.|||....
T Consensus 263 tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~--~svyvydtq~~--------- 331 (434)
T KOG1009|consen 263 SYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK--NSVYVYDTQTL--------- 331 (434)
T ss_pred eEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec--ceEEEeccccc---------
Confidence 44554433 245666766666666666654 3445666765 34889997531
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 412 ~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
..++.+ -++|...|++|+||+||..|+++|.||-+-+-.+++.
T Consensus 332 --------~P~~~v-~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 332 --------EPLAVV-DNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred --------cceEEE-eeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 344544 3567778999999999999999999999888777664
No 189
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.51 E-value=0.00026 Score=80.24 Aligned_cols=82 Identities=20% Similarity=0.392 Sum_probs=58.2
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 001935 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (994)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS 450 (994)
.-..|+++|||++|..+......|-+|++.+. .| ....+..+.-+ ....++++|+|||+||+++.
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-----~g--------~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPA-----TG--------TLTLVQTVPTG--GKFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-----TT--------TEEEEEEEEES--SSSEEEEEE-TTSSEEEEEE
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecC-----CC--------ceEEEEEEeCC--CCCccEEEEeCCCCEEEEEe
Confidence 57889999999999988887778999999532 12 11233333221 12478999999999999887
Q ss_pred -CCCeEEEEecCCCCCCc
Q 001935 451 -SKGTCHVFVLSPFGGDS 467 (994)
Q Consensus 451 -~dGTVhIw~I~~~gg~~ 467 (994)
.+++|.+|++++..|..
T Consensus 311 ~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 311 QDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp TTTTEEEEEEEETTTTEE
T ss_pred cCCCeEEEEEEeCCCCcE
Confidence 55799999998766654
No 190
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.51 E-value=9.4e-06 Score=88.54 Aligned_cols=242 Identities=16% Similarity=0.173 Sum_probs=150.4
Q ss_pred CCeEEEEEec--------CcEEEEEccCCCcc-----eEeeee----ccCCEEEEEEecCCCCCCCCCCccccCcEEEEE
Q 001935 74 FKQVLLLGYQ--------NGFQVLDVEDASNF-----NELVSK----RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVV 136 (994)
Q Consensus 74 ~~~vL~lGy~--------~G~qVWDv~~~g~v-----~ells~----hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvV 136 (994)
++++|++.|. .+..||.+...-+- .|.+.. +-|.|.||.+-|+.. -||.+
T Consensus 75 d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~-------------klasm 141 (370)
T KOG1007|consen 75 DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD-------------KLASM 141 (370)
T ss_pred CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC-------------eeEEe
Confidence 5789999988 45789999543211 233332 347899999998651 23432
Q ss_pred ecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeE-EEEEeCC------CcEEEEEecC----CeE
Q 001935 137 AGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-EHVLRFR------SSVCMVRCSP----RIV 205 (994)
Q Consensus 137 sgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~-V~tL~f~------S~V~sV~~S~----~iL 205 (994)
. +..|.||++..+.. +..+.-+ -.-.+=+++| ..+
T Consensus 142 ~----------------------------------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 142 D----------------------------------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred c----------------------------------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence 1 25799999987765 5555322 1233445666 578
Q ss_pred EEEeCCeEEEEECCCCceeEEEee-cCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCC
Q 001935 206 AVGLATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSP 284 (994)
Q Consensus 206 AVgl~~~I~IwDa~Tle~l~tL~t-~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~ 284 (994)
++..+..+.+||++|+++..+|.. |-. +. |=|-|.+
T Consensus 188 ~tt~d~tl~~~D~RT~~~~~sI~dAHgq-----------------~v---rdlDfNp----------------------- 224 (370)
T KOG1007|consen 188 ATTSDSTLQFWDLRTMKKNNSIEDAHGQ-----------------RV---RDLDFNP----------------------- 224 (370)
T ss_pred EEeCCCcEEEEEccchhhhcchhhhhcc-----------------ee---eeccCCC-----------------------
Confidence 899999999999999988776653 111 00 0011111
Q ss_pred CcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC-cEEE
Q 001935 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR-AIIS 363 (994)
Q Consensus 285 stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~-~~i~ 363 (994)
... ..+++++.||.|+|||...- ..+.
T Consensus 225 -------------------------------------------------nkq---~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 225 -------------------------------------------------NKQ---HILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred -------------------------------------------------Cce---EEEEEcCCCccEEEEeccCCCcccc
Confidence 100 02346789999999999864 5789
Q ss_pred EeccCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCCCCcccCCC----CC-----CccccCCcceE-----EEEEecc
Q 001935 364 QFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGS----GN-----HKYDWNSSHVH-----LYKLHRG 428 (994)
Q Consensus 364 ~~~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~s----G~-----~~~~~~~s~~~-----l~~L~RG 428 (994)
.+.+|++.|.++.|+|.- +|+.|++.| ..+.+|..... + +.. +. ...+-...+.. |.++.
T Consensus 253 el~~HsHWvW~VRfn~~hdqLiLs~~SD-s~V~Lsca~sv-S-SE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd-- 327 (370)
T KOG1007|consen 253 ELPGHSHWVWAVRFNPEHDQLILSGGSD-SAVNLSCASSV-S-SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD-- 327 (370)
T ss_pred ccCCCceEEEEEEecCccceEEEecCCC-ceeEEEecccc-c-cccccccccccccCcchhhHHhccccccccccccc--
Confidence 999999999999999975 577788875 45788875321 0 000 00 00000001111 11221
Q ss_pred cccccEEEEEEccCCCEE-EEEeCCCeEEEEecCC
Q 001935 429 ITSATIQDICFSHYSQWI-AIVSSKGTCHVFVLSP 462 (994)
Q Consensus 429 ~t~a~I~sIaFSpDg~~L-AsgS~dGTVhIw~I~~ 462 (994)
.+...|++++||.-.-|+ |+=|-||.+-|=.+.+
T Consensus 328 ehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 328 EHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 134579999999877776 5678899998876654
No 191
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.50 E-value=4.3e-06 Score=94.08 Aligned_cols=128 Identities=11% Similarity=0.044 Sum_probs=93.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceE------eeeeccCCEEEEEEecCCCCCCCCC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNE------LVSKRDGPVSFLQMQPFPVKDDGCE 124 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~e------lls~hdGpV~~v~~lP~p~~s~~~D 124 (994)
.-+|+..|+-+.|+- -..+++++|.++. ++||++.+.+..+. .|.+|.-.|..|++-|..
T Consensus 77 v~GHt~~vLDi~w~P------fnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA------- 143 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCP------FNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA------- 143 (472)
T ss_pred ccCccccccccccCc------cCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc-------
Confidence 467899887666652 1246899999876 99999976554332 345677778888877643
Q ss_pred CccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--
Q 001935 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-- 202 (994)
Q Consensus 125 ~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~-- 202 (994)
.+.|+.. ..+++|.+||+.+|+.+-+|+++..|+++.||.
T Consensus 144 -----~NVLlsa---------------------------------g~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 144 -----PNVLLSA---------------------------------GSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDG 185 (472)
T ss_pred -----hhhHhhc---------------------------------cCCceEEEEeccCCceeeecCCCCeEEEEEeccCC
Confidence 1234421 135799999999999998999999999999997
Q ss_pred CeEE-EEeCCeEEEEECCCCceeEEEeec
Q 001935 203 RIVA-VGLATQIYCFDALTLENKFSVLTY 230 (994)
Q Consensus 203 ~iLA-Vgl~~~I~IwDa~Tle~l~tL~t~ 230 (994)
..|+ ++-|.+|+|||.++.+.+..-..|
T Consensus 186 s~l~TtckDKkvRv~dpr~~~~v~e~~~h 214 (472)
T KOG0303|consen 186 SLLCTTCKDKKVRVIDPRRGTVVSEGVAH 214 (472)
T ss_pred ceeeeecccceeEEEcCCCCcEeeecccc
Confidence 3555 466778999999998876655433
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=4.3e-06 Score=102.56 Aligned_cols=101 Identities=16% Similarity=0.235 Sum_probs=75.5
Q ss_pred cccCCCCeEEEEECCCCc--EEEEeccCC--C-CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCC
Q 001935 343 ADMDNAGIVVVKDFVTRA--IISQFKAHT--S-PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~--~i~~~~aHt--s-pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~ 417 (994)
.+++.+|.|++||+.... ..-++..|. + .+++|..+++..++|+|+. ..|+||++. |
T Consensus 1273 vSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~--q~ikIy~~~--------G-------- 1334 (1387)
T KOG1517|consen 1273 VSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA--QLIKIYSLS--------G-------- 1334 (1387)
T ss_pred eeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc--ceEEEEecC--------h--------
Confidence 467899999999998742 334455564 3 5999999999999999997 569999985 3
Q ss_pred cceEEEEEe--c---ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 418 SHVHLYKLH--R---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 418 s~~~l~~L~--R---G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
.++..++ - |-....+.|++|.|---.||+|+.|.||-||..++.
T Consensus 1335 --~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1335 --EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred --hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 1221111 1 212234789999999999999999999999987654
No 193
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=0.00012 Score=84.97 Aligned_cols=95 Identities=8% Similarity=0.012 Sum_probs=55.6
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--eEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 350 ~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt--~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
.|.++|+.+++... +..........+|+|||++|+..+.++. .|.+||+.. | ....|..
T Consensus 312 ~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-------g-----------~~~~lt~ 372 (430)
T PRK00178 312 QIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-------G-----------SVRILTD 372 (430)
T ss_pred eEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC-------C-----------CEEEccC
Confidence 46666776665322 2111122345789999999998875433 466677642 2 1122221
Q ss_pred ccccccEEEEEEccCCCEEEEEeCC-CeEEEEecCCCCCC
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGGD 466 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~d-GTVhIw~I~~~gg~ 466 (994)
+ ......+|||||++|+.++.+ |.-+||-+...|..
T Consensus 373 ~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~ 409 (430)
T PRK00178 373 T---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV 409 (430)
T ss_pred C---CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 1 112356899999999988765 45566666655543
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=1.3e-05 Score=98.62 Aligned_cols=101 Identities=20% Similarity=0.219 Sum_probs=75.3
Q ss_pred cCCCCeEEEEECCCC---cEEEEeccCCCC--eEEEEECCCCCE-EEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCc
Q 001935 345 MDNAGIVVVKDFVTR---AIISQFKAHTSP--ISALCFDPSGTL-LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~---~~i~~~~aHtsp--IsaLaFSPdGtl-LATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s 418 (994)
|-.||.|++||.... ..+...+.|+.+ |.-+.|.+.|-- |++||.+|. |++||+.-.+.- ..
T Consensus 1227 GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e-----------~~ 1294 (1387)
T KOG1517|consen 1227 GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKE-----------TF 1294 (1387)
T ss_pred eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCccc-----------cc
Confidence 346999999998754 367888999988 999999998876 999999886 999999632100 00
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 419 ~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
....+.-..|. .++++.-.++...||+|+. +.|.||++.
T Consensus 1295 ~~iv~~~~yGs---~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1295 LTIVAHWEYGS---ALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred ceeeeccccCc---cceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 01111111131 3678999999999999999 999999975
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.45 E-value=4e-06 Score=96.93 Aligned_cols=208 Identities=19% Similarity=0.233 Sum_probs=133.2
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCc
Q 001935 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (994)
Q Consensus 75 ~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~ 153 (994)
...|+++..+| |.|.+- .+.+...++.|.|.|.+-++.|++.. | +. +|+
T Consensus 75 ~d~~~i~s~DGkf~il~k--~~rVE~sv~AH~~A~~~gRW~~dGtg------------L-lt-~GE-------------- 124 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK--SARVERSISAHAAAISSGRWSPDGAG------------L-LT-AGE-------------- 124 (737)
T ss_pred cceEEEEcCCceEEEecc--cchhhhhhhhhhhhhhhcccCCCCce------------e-ee-ecC--------------
Confidence 34666666666 888864 68899999999999999999988721 2 32 221
Q ss_pred cccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE-eCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEeec
Q 001935 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL-RFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTY 230 (994)
Q Consensus 154 ~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL-~f~S~V~sV~~S~--~iLAVgl~~~I~IwDa~Tle~l~tL~t~ 230 (994)
++.|++|+- +|-.-.++ ++..+|+++++.| .-++.+..++|+|=-+.-...+.
T Consensus 125 ------------------DG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i----- 180 (737)
T KOG1524|consen 125 ------------------DGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKII----- 180 (737)
T ss_pred ------------------CceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeeccccccee-----
Confidence 368999983 45433333 5778999999987 45666666677663221110011
Q ss_pred CCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccc
Q 001935 231 PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLS 310 (994)
Q Consensus 231 p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ 310 (994)
+|=|--| ++
T Consensus 181 ------------------------~WkAHDG-----------------------------------------------ii 189 (737)
T KOG1524|consen 181 ------------------------RWRAHDG-----------------------------------------------LV 189 (737)
T ss_pred ------------------------EEeccCc-----------------------------------------------EE
Confidence 2222211 00
Q ss_pred eeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC
Q 001935 311 KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY 390 (994)
Q Consensus 311 ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~d 390 (994)
=.+ +|..-.-.+++++.|-..+|||.. |+.+-+-.+|..||++++|+|+ ++.|.+|-
T Consensus 190 L~~--------------------~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~- 246 (737)
T KOG1524|consen 190 LSL--------------------SWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY- 246 (737)
T ss_pred EEe--------------------ecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-
Confidence 000 000000023467899999999987 4555666789999999999999 88877775
Q ss_pred CCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeE-EEEecC
Q 001935 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTC-HVFVLS 461 (994)
Q Consensus 391 Gt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTV-hIw~I~ 461 (994)
++.| |.- | ....|..++||+||..+++|+..|.+ |-+.|+
T Consensus 247 -nt~R-~~~-p----------------------------~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie 287 (737)
T KOG1524|consen 247 -NTAR-FSS-P----------------------------RVGSIFNLSWSADGTQATCGTSTGQLIVAYAIE 287 (737)
T ss_pred -eeee-ecC-C----------------------------CccceEEEEEcCCCceeeccccCceEEEeeeeh
Confidence 2344 211 1 11358899999999999999999974 333443
No 196
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.45 E-value=1.6e-07 Score=108.28 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=73.4
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc--ccEEEEE
Q 001935 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS--ATIQDIC 438 (994)
Q Consensus 361 ~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~--a~I~sIa 438 (994)
.+..+.--..+|...+|+|||++||+.|.||. +|||+... ++| +..++. +...|++
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt------------------~eL---lg~mkSYFGGLLCvc 339 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDT------------------QEL---LGVMKSYFGGLLCVC 339 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccH------------------HHH---HHHHHhhccceEEEE
Confidence 34444434568999999999999999999887 89999742 122 111111 2478999
Q ss_pred EccCCCEEEEEeCCCeEEEEecCCCCCCcccccccCCCCCCccCC
Q 001935 439 FSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFP 483 (994)
Q Consensus 439 FSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~s~~~~~~~~p 483 (994)
|||||+||++|+.|.-|.||.+....-..--+.|.+.|......|
T Consensus 340 WSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 340 WSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999876543333367877665554444
No 197
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.45 E-value=6.2e-06 Score=96.02 Aligned_cols=89 Identities=13% Similarity=0.151 Sum_probs=59.3
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 001935 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT 430 (994)
Q Consensus 351 V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t 430 (994)
|.+||+.++. +..+..|...+...+|+|||+.|+.++..+...+||++... +. ....+ +..
T Consensus 274 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~------~~----------~~~~l--~~~ 334 (429)
T PRK01742 274 IYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS------GG----------GASLV--GGR 334 (429)
T ss_pred EEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC------CC----------CeEEe--cCC
Confidence 4455776655 45566777788899999999988877754445899987431 10 11111 111
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 431 SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 431 ~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
. ...+|||||++|+.++.++.+ +|++..
T Consensus 335 -~--~~~~~SpDG~~ia~~~~~~i~-~~Dl~~ 362 (429)
T PRK01742 335 -G--YSAQISADGKTLVMINGDNVV-KQDLTS 362 (429)
T ss_pred -C--CCccCCCCCCEEEEEcCCCEE-EEECCC
Confidence 1 457899999999998886654 577654
No 198
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=5.5e-06 Score=90.96 Aligned_cols=39 Identities=15% Similarity=0.389 Sum_probs=35.4
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeC
Q 001935 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (994)
Q Consensus 360 ~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (994)
+.+..|..|..+|..+.|+=.|+.|++++.||. +|+|..
T Consensus 279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~-VRLWka 317 (361)
T KOG2445|consen 279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC-VRLWKA 317 (361)
T ss_pred EEeeeccCCCCceEEEEEeeeeeEEeecCCCce-eeehhh
Confidence 467788899999999999999999999999887 899985
No 199
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.43 E-value=1.6e-06 Score=100.32 Aligned_cols=89 Identities=15% Similarity=0.260 Sum_probs=68.8
Q ss_pred ccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCC
Q 001935 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (994)
Q Consensus 329 ~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~s 408 (994)
+.|++++++++ ..+.||.++|||+.+.+++..++.--..+.|++|||||+|+||+++|+ .+.||....
T Consensus 296 f~FS~DG~~LA----~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~e------- 363 (636)
T KOG2394|consen 296 FAFSPDGKYLA----TVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFEE------- 363 (636)
T ss_pred eeEcCCCceEE----EEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-eEEEEEecc-------
Confidence 34455566544 568999999999999998888888889999999999999999999965 599999853
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEcc
Q 001935 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (994)
Q Consensus 409 G~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSp 441 (994)
+ +.+.+- .| |..+|..++|.|
T Consensus 364 r----------RVVARG-qG-HkSWVs~VaFDp 384 (636)
T KOG2394|consen 364 R----------RVVARG-QG-HKSWVSVVAFDP 384 (636)
T ss_pred c----------eEEEec-cc-cccceeeEeecc
Confidence 1 222211 23 456899999984
No 200
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.43 E-value=6.5e-06 Score=89.81 Aligned_cols=105 Identities=15% Similarity=0.229 Sum_probs=81.3
Q ss_pred cccCCCCeEEEEECCCCcEEEEec---cCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCc
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFK---AHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~---aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s 418 (994)
++.+.||.||+||+...+--..+- ....|+..|+++++. ++|||-..+...|.|-|+.-. +
T Consensus 213 ASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P------~--------- 277 (364)
T KOG0290|consen 213 ASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP------C--------- 277 (364)
T ss_pred EEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC------C---------
Confidence 466789999999999875333232 225689999998755 689998888888999999632 2
Q ss_pred ceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEecCCCCC
Q 001935 419 HVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 419 ~~~l~~L~RG~t~a~I~sIaFSpDg-~~LAsgS~dGTVhIw~I~~~gg 465 (994)
..+.+|+ + |.+.|..|+|.|.+ ..|+++++|-.+-||+|.....
T Consensus 278 -tpva~L~-~-H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 278 -TPVARLR-N-HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred -cceehhh-c-CcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 2556774 4 56889999999965 6899999999999999987654
No 201
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=7e-07 Score=103.77 Aligned_cols=110 Identities=19% Similarity=0.275 Sum_probs=84.8
Q ss_pred ccccCCCCeEEEEECCC--------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCcc
Q 001935 342 GADMDNAGIVVVKDFVT--------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s--------~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~ 413 (994)
+++++.+|.+.+|.++. -+.+.+|+||..||.|++..+.|..+.|++.||+ ||.|++.++ +.+..
T Consensus 309 lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~-I~~w~~p~n------~dp~d 381 (577)
T KOG0642|consen 309 LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT-IRCWNLPPN------QDPDD 381 (577)
T ss_pred EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce-eeeeccCCC------CCccc
Confidence 45788999999999932 2478999999999999999999999999999887 999988542 11100
Q ss_pred ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 414 ~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
..... ...-.| -|++.+ ||.+++|.....|+++|.|||+++|...
T Consensus 382 s~dp~-vl~~~l-~Ghtda-vw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 382 SYDPS-VLSGTL-LGHTDA-VWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred ccCcc-hhccce-eccccc-eeeeeecccccceeeecCCceEEeeccC
Confidence 00000 122223 476654 9999999999999999999999999853
No 202
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=1.9e-05 Score=89.04 Aligned_cols=105 Identities=21% Similarity=0.201 Sum_probs=86.9
Q ss_pred ccccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcce
Q 001935 342 GADMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~-~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~ 420 (994)
++++..-+.|++||...+ +.+++|.--..+|+++...|+|+++.+|...|. +..||+.. + .
T Consensus 219 fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~-------~----------k 280 (412)
T KOG3881|consen 219 FATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRG-------G----------K 280 (412)
T ss_pred EEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccC-------c----------e
Confidence 345566789999999875 578999988999999999999999999999887 88999853 2 3
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
++.....|.+ ..|.+|.-.|..++||+++.|.-++||++...+-
T Consensus 281 l~g~~~kg~t-Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 281 LLGCGLKGIT-GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred eeccccCCcc-CCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 4444445665 3599999999999999999999999999988543
No 203
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.39 E-value=5e-07 Score=105.50 Aligned_cols=98 Identities=23% Similarity=0.302 Sum_probs=79.2
Q ss_pred cccCCCCeEEEEECCCC-------cEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccc
Q 001935 343 ADMDNAGIVVVKDFVTR-------AIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~-------~~i~~~~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~ 414 (994)
+-+..||.|+||-+..+ ..-..|.+|...|.+|.|+|=. ..||+||. +.+|++||+.. +
T Consensus 644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy-d~Ti~lWDl~~-------~----- 710 (1012)
T KOG1445|consen 644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY-DSTIELWDLAN-------A----- 710 (1012)
T ss_pred eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc-cceeeeeehhh-------h-----
Confidence 45778999999999764 2456788999999999999965 58899998 45699999964 2
Q ss_pred cCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 001935 415 WNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 415 ~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I 460 (994)
..-.+| .|++ ..|.++||||||+.+|+.+.||+++||.-
T Consensus 711 -----~~~~~l-~gHt-dqIf~~AWSpdGr~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 711 -----KLYSRL-VGHT-DQIFGIAWSPDGRRIATVCKDGTLRVYEP 749 (1012)
T ss_pred -----hhhhee-ccCc-CceeEEEECCCCcceeeeecCceEEEeCC
Confidence 122234 4654 57999999999999999999999999974
No 204
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=1.1e-05 Score=90.16 Aligned_cols=100 Identities=21% Similarity=0.337 Sum_probs=72.5
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
.+..|+|||..++..+-...---..++-|.|||||.+|..|+-|+ ++|||+.... |.. .-..+
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da-vfrlw~e~q~------------wt~---erw~l- 278 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA-VFRLWQENQS------------WTK---ERWIL- 278 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccc-eeeeehhccc------------cee---cceec-
Confidence 356799999999887655544556789999999999999999954 5999976421 111 11122
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCc
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 467 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~ 467 (994)
-...|+.-+|+|+|++|..+....+ .||.+.-.+...
T Consensus 279 ---gsgrvqtacWspcGsfLLf~~sgsp-~lysl~f~~~~~ 315 (445)
T KOG2139|consen 279 ---GSGRVQTACWSPCGSFLLFACSGSP-RLYSLTFDGEDS 315 (445)
T ss_pred ---cCCceeeeeecCCCCEEEEEEcCCc-eEEEEeecCCCc
Confidence 2237999999999999988876665 588887655443
No 205
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.37 E-value=0.00013 Score=83.44 Aligned_cols=90 Identities=16% Similarity=0.185 Sum_probs=57.2
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--eEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 350 ~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt--~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
.|.++|+.+++. ..+..+...+..++|+|+|++|+.++.++. .|.+|++.. + ....+..
T Consensus 303 ~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-------~-----------~~~~l~~ 363 (417)
T TIGR02800 303 QIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-------G-----------GERVLTD 363 (417)
T ss_pred eEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-------C-----------CeEEccC
Confidence 567777776653 344445566778899999999998887543 356666532 1 1122221
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
+ ......+|+|||++|+.++.++....+.+.
T Consensus 364 ~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~~ 394 (417)
T TIGR02800 364 T---GLDESPSFAPNGRMILYATTRGGRGVLGLV 394 (417)
T ss_pred C---CCCCCceECCCCCEEEEEEeCCCcEEEEEE
Confidence 1 123457899999999998888754444333
No 206
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.35 E-value=2e-05 Score=85.98 Aligned_cols=101 Identities=20% Similarity=0.230 Sum_probs=80.1
Q ss_pred CCCCeEEEEECCCCcEEEEe-ccCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 001935 346 DNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~-~aHtspIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~ 423 (994)
..++++..||+.+-+....| .||...|..|.|+|+-+ +|||++.+|. |||||.... ...++
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~t----------------k~pv~ 252 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKT----------------KFPVQ 252 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCC----------------Ccccc
Confidence 46889999999987766555 48999999999999986 6889998777 999998531 03566
Q ss_pred EEecccccccEEEEEEccC-CCEEEEEeCCCeEEEEecCCCCC
Q 001935 424 KLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpD-g~~LAsgS~dGTVhIw~I~~~gg 465 (994)
+|. + |..+||++.|.|- .+.|.+++.|..|-+|.......
T Consensus 253 el~-~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 253 ELP-G-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred ccC-C-CceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 664 3 4458999999984 68999999999999998655443
No 207
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.33 E-value=6.9e-05 Score=87.40 Aligned_cols=96 Identities=14% Similarity=0.206 Sum_probs=61.1
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--eEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt--~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
..|.+||+.++.. ..+..|.......+|+|||+.||.++..+. .|.+|++.. + ....+.
T Consensus 270 ~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-------~-----------~~~~lt 330 (435)
T PRK05137 270 TDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-------S-----------NPRRIS 330 (435)
T ss_pred ceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-------C-----------CeEEee
Confidence 4577889887764 456667666778999999999998875432 355666531 1 122232
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCC-eEEEEecCCCCC
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSSKG-TCHVFVLSPFGG 465 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~dG-TVhIw~I~~~gg 465 (994)
.+ ...+...+|||||++|+..+.++ ..+||-++..++
T Consensus 331 ~~--~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 331 FG--GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred cC--CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 22 12356688999999999887643 345554444333
No 208
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=6.7e-05 Score=87.66 Aligned_cols=93 Identities=18% Similarity=0.179 Sum_probs=60.4
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 001935 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (994)
Q Consensus 350 ~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~ 429 (994)
.|.+||+.+++.. .+..+...+...+|+|||+.|+.++.++...+||.+... .| ...++...
T Consensus 268 ~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~-----~g-----------~~~~lt~~- 329 (429)
T PRK03629 268 NLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN-----GG-----------APQRITWE- 329 (429)
T ss_pred EEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC-----CC-----------CeEEeecC-
Confidence 5888999887654 444555677889999999999888876545677765321 02 11222211
Q ss_pred ccccEEEEEEccCCCEEEEEeCC-Ce--EEEEecC
Q 001935 430 TSATIQDICFSHYSQWIAIVSSK-GT--CHVFVLS 461 (994)
Q Consensus 430 t~a~I~sIaFSpDg~~LAsgS~d-GT--VhIw~I~ 461 (994)
...+.+.+|||||++|+..+.+ +. +.+|++.
T Consensus 330 -~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~ 363 (429)
T PRK03629 330 -GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 363 (429)
T ss_pred -CCCccCEEECCCCCEEEEEEccCCCceEEEEECC
Confidence 1234678999999999887654 33 4455543
No 209
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=5.6e-05 Score=88.13 Aligned_cols=95 Identities=24% Similarity=0.311 Sum_probs=60.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 001935 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG 428 (994)
..|.+||+.+++. ..+..|.......+|+|||+.|+.++.++....||.+... .| ..+.+ .+ .|
T Consensus 272 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~-----~g--------~~~~l-t~-~g 335 (433)
T PRK04922 272 PEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS-----GG--------SAERL-TF-QG 335 (433)
T ss_pred ceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-----CC--------CeEEe-ec-CC
Confidence 4689999988764 4566666556778999999999888754433455544211 02 11122 22 22
Q ss_pred cccccEEEEEEccCCCEEEEEeCCC---eEEEEecCC
Q 001935 429 ITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 462 (994)
Q Consensus 429 ~t~a~I~sIaFSpDg~~LAsgS~dG---TVhIw~I~~ 462 (994)
......+|||||++|+..+.++ .|.+|++..
T Consensus 336 ---~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 336 ---NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred ---CCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence 2234689999999999876543 467777643
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=3e-06 Score=95.90 Aligned_cols=130 Identities=16% Similarity=0.205 Sum_probs=88.5
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCC---C-------C
Q 001935 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG---N-------H 411 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG---~-------~ 411 (994)
++.++.||++|||+..+...+..+.+|...|.+|.|||||++||+-+.+ ..+||++.....-.... . .
T Consensus 159 latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d--~~~VW~~~~g~~~a~~t~~~k~~~~~~cR 236 (398)
T KOG0771|consen 159 LATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD--SARVWSVNTGAALARKTPFSKDEMFSSCR 236 (398)
T ss_pred eeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC--ceEEEEeccCchhhhcCCcccchhhhhce
Confidence 3577899999999998888888999999999999999999999999985 58999987531000000 0 0
Q ss_pred cc-cc------------CCcceEEEE--Eecc---------cc-cccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCC
Q 001935 412 KY-DW------------NSSHVHLYK--LHRG---------IT-SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (994)
Q Consensus 412 ~~-~~------------~~s~~~l~~--L~RG---------~t-~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~ 466 (994)
.. +. +.....+++ +..+ .. ...|.+++-|+||+++|.|+.+|.|-|++.......
T Consensus 237 F~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~ 316 (398)
T KOG0771|consen 237 FSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL 316 (398)
T ss_pred ecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeee
Confidence 00 00 000001111 1111 11 125899999999999999999999999998765543
Q ss_pred c-cccccc
Q 001935 467 S-GFQTLS 473 (994)
Q Consensus 467 ~-~~~~H~ 473 (994)
. .-+.|.
T Consensus 317 ~~vk~aH~ 324 (398)
T KOG0771|consen 317 QYVKEAHL 324 (398)
T ss_pred Eeehhhhe
Confidence 2 224564
No 211
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=0.00066 Score=79.96 Aligned_cols=95 Identities=11% Similarity=0.077 Sum_probs=54.2
Q ss_pred eEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 001935 350 IVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (994)
Q Consensus 350 ~V~VwDl~s~~~i~-~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG 428 (994)
.|.++|+.+++... ++.++ .....+|+|||++|+..+.++...+||.+... +| .+..+..+
T Consensus 331 ~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~-----~g-----------~~~~lt~~ 392 (448)
T PRK04792 331 QIYRVNLASGKVSRLTFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLE-----TG-----------AMQVLTST 392 (448)
T ss_pred eEEEEECCCCCEEEEecCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECC-----CC-----------CeEEccCC
Confidence 46667777665432 22333 23356899999999888765554566554321 02 12222222
Q ss_pred cccccEEEEEEccCCCEEEEEeCCC-eEEEEecCCCCC
Q 001935 429 ITSATIQDICFSHYSQWIAIVSSKG-TCHVFVLSPFGG 465 (994)
Q Consensus 429 ~t~a~I~sIaFSpDg~~LAsgS~dG-TVhIw~I~~~gg 465 (994)
. .....+|+|||++|+..+.++ .-.||-++..|.
T Consensus 393 ~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 393 R---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred C---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 1 123458999999998877654 444555554444
No 212
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.23 E-value=0.0019 Score=74.01 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=66.9
Q ss_pred CCCCeEEEEECCCC-----cEEEEecc-------CCCCeEEEEECCCCCEEEEEEcC---------CCeEEEEeCCCCcc
Q 001935 346 DNAGIVVVKDFVTR-----AIISQFKA-------HTSPISALCFDPSGTLLVTASVY---------GNNINIFRIMPSCM 404 (994)
Q Consensus 346 s~dG~V~VwDl~s~-----~~i~~~~a-------HtspIsaLaFSPdGtlLATAS~d---------Gt~IrVwdi~p~~~ 404 (994)
++.|.|.+.|+... ..+..+.. ....+.-++|+|+|+.|..+... ++.|-|+|+..
T Consensus 212 s~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t--- 288 (352)
T TIGR02658 212 TYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT--- 288 (352)
T ss_pred ecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC---
Confidence 34499999996443 33333321 12223349999999998885421 24688888753
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEEe-CCCeEEEEecCCCC
Q 001935 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVS-SKGTCHVFVLSPFG 464 (994)
Q Consensus 405 ~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~-~LAsgS-~dGTVhIw~I~~~g 464 (994)
+ +.+.++.-| ..++.|+||||++ +|.+.. .+++|+|+++...+
T Consensus 289 ----~----------kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 289 ----G----------KRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred ----C----------eEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 2 456665544 4689999999999 777766 57999999987654
No 213
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.22 E-value=7e-05 Score=87.31 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=59.0
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 001935 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT 430 (994)
Q Consensus 351 V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t 430 (994)
|.++|+.++. +..+..|...+...+|+|||+.|+..+.++....||.+... .+ ..+.+ .+. |
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~-----~g--------~~~~l-t~~-g-- 327 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS-----GG--------AAQRV-TFT-G-- 327 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC-----CC--------ceEEE-ecC-C--
Confidence 4444555444 45566666556678999999999887765545788876321 01 11122 222 2
Q ss_pred cccEEEEEEccCCCEEEEEeCCC---eEEEEecCC
Q 001935 431 SATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 462 (994)
Q Consensus 431 ~a~I~sIaFSpDg~~LAsgS~dG---TVhIw~I~~ 462 (994)
......+|||||++|+..+.++ .|.+|++..
T Consensus 328 -~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~ 361 (427)
T PRK02889 328 -SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT 361 (427)
T ss_pred -CCcCceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence 1234678999999999888765 477887754
No 214
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.17 E-value=3.2e-05 Score=91.27 Aligned_cols=97 Identities=9% Similarity=0.122 Sum_probs=60.0
Q ss_pred EEEeccCCCCeEE---EEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-cccEEEE
Q 001935 362 ISQFKAHTSPISA---LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-SATIQDI 437 (994)
Q Consensus 362 i~~~~aHtspIsa---LaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t-~a~I~sI 437 (994)
+..-+||...|.. +-|..|...||||+.-+..|+||||...+. ...+. . ....++.-..+ .-.+.++
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~-~~r~e------p--~~~~~~~t~skrs~G~~nL 277 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT-AYRQE------P--RGSDKYPTHSKRSVGQVNL 277 (720)
T ss_pred ccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc-ccccC------C--CcccCccCcccceeeeEEE
Confidence 3445677777776 677788899999999555699999975421 10010 0 00011100001 1135566
Q ss_pred EEccCCCEEEEEeCCCeEEEEecCCCCCCc
Q 001935 438 CFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 467 (994)
Q Consensus 438 aFSpDg~~LAsgS~dGTVhIw~I~~~gg~~ 467 (994)
....-|.+|.+...|++|..|++...+..+
T Consensus 278 ~lDssGt~L~AsCtD~sIy~ynm~s~s~sP 307 (720)
T KOG0321|consen 278 ILDSSGTYLFASCTDNSIYFYNMRSLSISP 307 (720)
T ss_pred EecCCCCeEEEEecCCcEEEEeccccCcCc
Confidence 666666899888889999999998765433
No 215
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.16 E-value=3.7e-06 Score=64.61 Aligned_cols=38 Identities=26% Similarity=0.655 Sum_probs=35.0
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEe
Q 001935 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 398 (994)
Q Consensus 360 ~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwd 398 (994)
+++.+|++|.++|.+|+|+|++++|||++.|+ .|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~-~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDG-TIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTS-EEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCC-EEEEEC
Confidence 57889999999999999999999999999965 599997
No 216
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.15 E-value=0.00037 Score=78.59 Aligned_cols=300 Identities=14% Similarity=0.108 Sum_probs=159.7
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-----cceEeeeecc-CCEEEEEEecCCCCCCCCCC
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-----NFNELVSKRD-GPVSFLQMQPFPVKDDGCEG 125 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g-----~v~ells~hd-GpV~~v~~lP~p~~s~~~D~ 125 (994)
-+|.+-|....|.. .++.|+.|.++- .+||+++..- +-..+...|. ..|.+++|--.
T Consensus 53 ~~H~GCiNAlqFS~-------N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~--------- 116 (609)
T KOG4227|consen 53 REHTGCINALQFSH-------NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE--------- 116 (609)
T ss_pred hhhccccceeeecc-------CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC---------
Confidence 44666677777753 478999998875 8999996420 1122222222 45666665411
Q ss_pred ccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC---CcEEEEEecC
Q 001935 126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP 202 (994)
Q Consensus 126 F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~---S~V~sV~~S~ 202 (994)
+ ..|. +| +. ..+|.+-|+.+.+-+-++... +.||.+..+|
T Consensus 117 ---N-~~~~--SG--------------------~~-----------~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P 159 (609)
T KOG4227|consen 117 ---N-RFLY--SG--------------------ER-----------WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP 159 (609)
T ss_pred ---C-eeEe--cC--------------------CC-----------cceeEeeecccceeeeeecccCcccceeecccCC
Confidence 1 1112 11 12 268999999999988887654 5899999988
Q ss_pred --CeEEEEe-CCeEEEEECCCCceeEEEe---ecCCccccCCCccccccCccceEEc---ccEEEEccCC--eeeccCCc
Q 001935 203 --RIVAVGL-ATQIYCFDALTLENKFSVL---TYPVPQLAGQGAVGINVGYGPMAVG---PRWLAYASNT--LLLSNSGR 271 (994)
Q Consensus 203 --~iLAVgl-~~~I~IwDa~Tle~l~tL~---t~p~p~~~~~g~~~vnv~~gplAlg---pRwLAyas~~--~~iwd~G~ 271 (994)
++|++.. ++.|.+||++...+...+. .++. .+-..-|. |++||.+..+ +-+|+.-
T Consensus 160 ~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~-------------~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R- 225 (609)
T KOG4227|consen 160 TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK-------------NFYTAEFHPETPALILVNSETGGPNVFDRR- 225 (609)
T ss_pred CCceEEEEecCceEEEEeccCCCCCCceeeecCCCc-------------cceeeeecCCCceeEEeccccCCCCceeec-
Confidence 5666655 5679999998766432222 2222 12223333 3788877653 4456531
Q ss_pred cCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeE
Q 001935 272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351 (994)
Q Consensus 272 ~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V 351 (994)
. +| .++ -+|. ...|+...-+.+...+ +++.+ .++.+-..-..-
T Consensus 226 ~-~~------~~~----------~~~~------~~~~L~~~~~~~M~~~----------~~~~G----~Q~msiRR~~~P 268 (609)
T KOG4227|consen 226 M-QA------RPV----------YQRS------MFKGLPQENTEWMGSL----------WSPSG----NQFMSIRRGKCP 268 (609)
T ss_pred c-cc------chH----------Hhhh------ccccCcccchhhhhee----------eCCCC----CeehhhhccCCC
Confidence 0 00 000 0000 0000000000011000 11110 011111111223
Q ss_pred EEEECCCCcEE-EEeccCC-------CCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCC---CCCCccccCC--c
Q 001935 352 VVKDFVTRAII-SQFKAHT-------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG---SGNHKYDWNS--S 418 (994)
Q Consensus 352 ~VwDl~s~~~i-~~~~aHt-------spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~---sG~~~~~~~~--s 418 (994)
.+||+.+.++. -++ .|. ..|-+++|--|-+ +||+|. .-.|.+|.+.......+ -|......+. .
T Consensus 269 ~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD-~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~ 345 (609)
T KOG4227|consen 269 LYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDDYT-VATGSD-HWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIF 345 (609)
T ss_pred EEeeeecccceeEec-cCCCCcceeeeeeeeeeeeccee-eeccCc-ccceEEEecCCCccccCccccCcchhhCchhhe
Confidence 46777764432 222 222 2577899987755 888887 56799999954322211 0100000000 1
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 001935 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 419 ~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I 460 (994)
....+...||+ +..+..+.|+|-...|++++-...++||.-
T Consensus 346 i~~~~~VLrGH-RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 346 IEKELTVLRGH-RSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ecceeEEEecc-cccccceeecCCcceEeccchhhheecccc
Confidence 11223344774 567889999999999999999999999974
No 217
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.12 E-value=8.3e-06 Score=89.57 Aligned_cols=128 Identities=20% Similarity=0.203 Sum_probs=94.5
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCC-----CCc--ccCCCC------
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM-----PSC--MRSGSG------ 409 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~-----p~~--~~~~sG------ 409 (994)
.+++.|.+.+||.+++++++.+..+|++.|+++.|+++|.||+|||.|++ .+||... |.. ...-++
T Consensus 164 gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t-aHIW~~av~~~vP~~~a~~~hSsEeE~e~ 242 (481)
T KOG0300|consen 164 GTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET-AHIWKAAVNWEVPSNNAPSDHSSEEEEEH 242 (481)
T ss_pred eecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc-hHHHHHhhcCcCCCCCCCCCCCchhhhhc
Confidence 36678999999999999999999999999999999999999999999776 7999832 210 000000
Q ss_pred ----------CCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccccccc
Q 001935 410 ----------NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (994)
Q Consensus 410 ----------~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~ 473 (994)
...++-..-...|.+|. | |.+.|.+..|=..|+.++++|-|.|..+|+++...-...+..|.
T Consensus 243 sDe~~~d~d~~~~sD~~tiRvPl~~lt-g-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd 314 (481)
T KOG0300|consen 243 SDEHNRDTDSSEKSDGHTIRVPLMRLT-G-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHD 314 (481)
T ss_pred ccccccccccccccCCceeeeeeeeee-c-cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcc
Confidence 00111111224566664 4 56889999999999999999999999999998754434444553
No 218
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.09 E-value=0.00081 Score=78.82 Aligned_cols=85 Identities=13% Similarity=0.228 Sum_probs=54.2
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCC--CeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 001935 362 ISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (994)
Q Consensus 362 i~~~~aHtspIsaLaFSPdGtlLATAS~dG--t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaF 439 (994)
...+..+...+...+|||||++||..+.++ ..|.+|++.. | ....|..+ ...+.+.+|
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-------g-----------~~~~Lt~~--~~~~~~p~w 378 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-------G-----------RDYQLTTS--PENKESPSW 378 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-------C-----------CeEEccCC--CCCccceEE
Confidence 344555556777899999999998776542 3588888752 2 12233322 124677999
Q ss_pred ccCCCEEEEEeC-CCeEEEEecCCCCCC
Q 001935 440 SHYSQWIAIVSS-KGTCHVFVLSPFGGD 466 (994)
Q Consensus 440 SpDg~~LAsgS~-dGTVhIw~I~~~gg~ 466 (994)
+|||++|+..+. ++.-.||.++..++.
T Consensus 379 SpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 379 AIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 999999986544 444555555554443
No 219
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.09 E-value=1.1e-06 Score=105.47 Aligned_cols=96 Identities=23% Similarity=0.371 Sum_probs=82.6
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceE
Q 001935 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~ 421 (994)
+.++..|..|+||...+..+++..++|...|+.|+.+...+++|+||. +.+||||.+.. | ..
T Consensus 205 Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~-D~vIrvWrl~~-------~----------~p 266 (1113)
T KOG0644|consen 205 IITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASN-DKVIRVWRLPD-------G----------AP 266 (1113)
T ss_pred EeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhccc-CceEEEEecCC-------C----------ch
Confidence 346788999999999999999999999999999999999999999998 78899999954 3 23
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 422 l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
+- +.||++.+ |++|+|||-- +++.|||+++|+-.
T Consensus 267 vs-vLrghtga-vtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 267 VS-VLRGHTGA-VTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred HH-HHhccccc-eeeeccCccc----cCCCCCceEecccc
Confidence 33 34787765 9999999954 88999999999865
No 220
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.08 E-value=0.0062 Score=68.82 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=69.2
Q ss_pred CCeEEEEECCCC-------cEEEEecc---CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCC
Q 001935 348 AGIVVVKDFVTR-------AIISQFKA---HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (994)
Q Consensus 348 dG~V~VwDl~s~-------~~i~~~~a---HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~ 417 (994)
+++|.+|+.... +.+.++++ -+...++|..+|||++|..+-..-..|-+|.+.+. +|
T Consensus 212 ~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~-----~g-------- 278 (346)
T COG2706 212 NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD-----GG-------- 278 (346)
T ss_pred CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC-----CC--------
Confidence 455666666552 12233332 24568899999999999866553345899999764 12
Q ss_pred cceEEEEEecccccc-cEEEEEEccCCCEEEEEeCCC-eEEEEecCCCCCCcc
Q 001935 418 SHVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKG-TCHVFVLSPFGGDSG 468 (994)
Q Consensus 418 s~~~l~~L~RG~t~a-~I~sIaFSpDg~~LAsgS~dG-TVhIw~I~~~gg~~~ 468 (994)
+|--+.+-.+.. .-.+..|++++++|+++..++ +++||.+++..|..+
T Consensus 279 ---~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 279 ---KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ---EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 232222222222 257899999999999988774 799999998766543
No 221
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.07 E-value=0.00012 Score=85.42 Aligned_cols=122 Identities=10% Similarity=0.076 Sum_probs=72.2
Q ss_pred ccCCCCeEEEEECCCCc-------EEE---EeccCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEeCC---CCcccCCCC
Q 001935 344 DMDNAGIVVVKDFVTRA-------IIS---QFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIM---PSCMRSGSG 409 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~-------~i~---~~~aHtspIsaLaFSPdGt-lLATAS~dGt~IrVwdi~---p~~~~~~sG 409 (994)
+++.||+++-+|+.... +.. ......-..-+|.+||.-. +||.++. +--.|+||.. +.+.++ |
T Consensus 165 sasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgs-dpfarLYD~Rr~lks~~s~--~ 241 (758)
T KOG1310|consen 165 SASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGS-DPFARLYDRRRVLKSFRSD--G 241 (758)
T ss_pred EecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCC-CchhhhhhhhhhccCCCCC--c
Confidence 46789999999997632 111 1111223567899999886 5666665 6678999942 221111 2
Q ss_pred CCccccCCcceEEEEE-------ecc-cccc--cEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcc
Q 001935 410 NHKYDWNSSHVHLYKL-------HRG-ITSA--TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 468 (994)
Q Consensus 410 ~~~~~~~~s~~~l~~L-------~RG-~t~a--~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~ 468 (994)
.-....+...+++..| .+| .+.- .++-++|+|+|.-|.+.=.-.-|.+|+++..+++..
T Consensus 242 ~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 242 TMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred cccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 1001111111222222 233 1221 267789999999998887788899999988777643
No 222
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.06 E-value=7.4e-05 Score=82.74 Aligned_cols=187 Identities=20% Similarity=0.252 Sum_probs=122.9
Q ss_pred CCCCeEEEEEecCcEEEEEccCCCcceEeee---e-c---cCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCC
Q 001935 72 SVFKQVLLLGYQNGFQVLDVEDASNFNELVS---K-R---DGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTL 144 (994)
Q Consensus 72 ~~~~~vL~lGy~~G~qVWDv~~~g~v~ells---~-h---dGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~ 144 (994)
++++.-|.+||.+.++|||+.-.|...+... . . -|-+.++++.|.-. .++|+ .
T Consensus 167 s~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~------------~~~a~-g------- 226 (406)
T KOG2919|consen 167 SPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDS------------KTLAV-G------- 226 (406)
T ss_pred cCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCC------------cceee-e-------
Confidence 3578899999999999999966554433322 1 1 24466667666431 14554 1
Q ss_pred CCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecC--CeEEEEe--CCeEEEEECC
Q 001935 145 APGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVGL--ATQIYCFDAL 219 (994)
Q Consensus 145 ~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~-f~S~V~sV~~S~--~iLAVgl--~~~I~IwDa~ 219 (994)
.+..++-||....+..+..|- +.+.|..+++.+ +.|.+|. +++|-+||++
T Consensus 227 -------------------------sY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 227 -------------------------SYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred -------------------------cccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 023678899988888887775 446899999876 5677665 5689999987
Q ss_pred CCc-eeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEee
Q 001935 220 TLE-NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA 298 (994)
Q Consensus 220 Tle-~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A 298 (994)
.-+ .++.|..|-. + .|+-++.|
T Consensus 282 ~~~~pv~~L~rhv~---------~------------------TNQRI~FD------------------------------ 304 (406)
T KOG2919|consen 282 YSRDPVYALERHVG---------D------------------TNQRILFD------------------------------ 304 (406)
T ss_pred hccchhhhhhhhcc---------C------------------ccceEEEe------------------------------
Confidence 532 1222211100 0 00000000
Q ss_pred hhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEE
Q 001935 299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAHTSPISALCF 377 (994)
Q Consensus 299 ~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s-~~~i~~~~aHtspIsaLaF 377 (994)
+-|. +. .+++++.+|.|++||+.+ +..+..+..|..-++.++|
T Consensus 305 ---------------------ld~~-----------~~----~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 305 ---------------------LDPK-----------GE----ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL 348 (406)
T ss_pred ---------------------cCCC-----------Cc----eeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence 0000 11 134678999999999998 6668899999999999999
Q ss_pred CCCCCEEEEEEcCCCeEEEEeCC
Q 001935 378 DPSGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 378 SPdGtlLATAS~dGt~IrVwdi~ 400 (994)
+|-=.+|||+| |+ |+|...
T Consensus 349 nP~mpilatss--Gq--r~f~~~ 367 (406)
T KOG2919|consen 349 NPIMPILATSS--GQ--RIFKYP 367 (406)
T ss_pred Ccccceeeecc--Cc--eeecCC
Confidence 99989999998 65 778763
No 223
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.06 E-value=3.9e-05 Score=83.10 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=53.0
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeC
Q 001935 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (994)
+++++-||.||||.-.+.+.++.++-|...|++|+|+||-.++|.||.|++ |-+|++
T Consensus 266 lATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL 322 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL 322 (323)
T ss_pred EeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence 457889999999999999999999999999999999999999999999665 999986
No 224
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=6.5e-05 Score=87.85 Aligned_cols=56 Identities=21% Similarity=0.408 Sum_probs=52.1
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCC
Q 001935 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (994)
.+..+++|+++|..++..++...+|...+++|+|.|+|-+|++++.+|. +++|.+.
T Consensus 506 ~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld 561 (577)
T KOG0642|consen 506 TAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLD 561 (577)
T ss_pred ecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhcc
Confidence 4578999999999999999999999999999999999999999999776 8999984
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.04 E-value=3.2e-05 Score=91.31 Aligned_cols=109 Identities=14% Similarity=0.223 Sum_probs=77.4
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCc----ccCCC--------------
Q 001935 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC----MRSGS-------------- 408 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~----~~~~s-------------- 408 (994)
.+..+.|||...|..+.++++|...|.+++++.||+++|+++. ++.+.||.-+-.. +.+-.
T Consensus 31 Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~a-DK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~La 109 (1081)
T KOG1538|consen 31 AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSA-DKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLA 109 (1081)
T ss_pred cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCC-ceeEEEecccccceeeeccCCeeeEeecCchHHHhh
Confidence 3457999999999999999999999999999999999999999 5678899864320 00000
Q ss_pred -C--CCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 001935 409 -G--NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 409 -G--~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
. ....=|++....+.+. + ..+.|.+++|..||++||.|-.+|||.|=+
T Consensus 110 sCsLsdFglWS~~qK~V~K~-k--ss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 110 SCSLSDFGLWSPEQKSVSKH-K--SSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred hcchhhccccChhhhhHHhh-h--hheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 0 0000122211111111 1 235688999999999999999999998863
No 226
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.03 E-value=0.00044 Score=81.41 Aligned_cols=97 Identities=20% Similarity=0.283 Sum_probs=62.4
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-cc
Q 001935 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RG 428 (994)
Q Consensus 350 ~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~-RG 428 (994)
.|.++|+.+++. ..+..|.......+|+|||+.|+..+..+....||.+... +| ...++. .|
T Consensus 287 ~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~-----~g-----------~~~~Lt~~g 349 (448)
T PRK04792 287 EIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA-----SG-----------KVSRLTFEG 349 (448)
T ss_pred EEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC-----CC-----------CEEEEecCC
Confidence 577888887754 4555566666788999999998877765444566654221 12 112221 22
Q ss_pred cccccEEEEEEccCCCEEEEEeC-CCeEEEEecCCCCCC
Q 001935 429 ITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGGD 466 (994)
Q Consensus 429 ~t~a~I~sIaFSpDg~~LAsgS~-dGTVhIw~I~~~gg~ 466 (994)
. .....+|||||++|+..+. ++..+||.++..++.
T Consensus 350 ~---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 350 E---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred C---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence 2 2345799999999988766 456788877765554
No 227
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.03 E-value=0.00022 Score=84.48 Aligned_cols=100 Identities=10% Similarity=0.041 Sum_probs=73.6
Q ss_pred CCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCC
Q 001935 73 VFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (994)
Q Consensus 73 ~~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~ 152 (994)
|++.-|+++..+.+-|||+++ |.+.++|.+|...|++|++..++ .+.|. |
T Consensus 22 PDGsqL~lAAg~rlliyD~nd-G~llqtLKgHKDtVycVAys~dG-------------krFAS--G-------------- 71 (1081)
T KOG1538|consen 22 PDGTQLILAAGSRLLVYDTSD-GTLLQPLKGHKDTVYCVAYAKDG-------------KRFAS--G-------------- 71 (1081)
T ss_pred CCCceEEEecCCEEEEEeCCC-cccccccccccceEEEEEEccCC-------------ceecc--C--------------
Confidence 466778888889999999964 77889999999999999988665 24442 1
Q ss_pred ccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCC
Q 001935 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALT 220 (994)
Q Consensus 153 ~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVgl~~~I~IwDa~T 220 (994)
+++..|.+|+-+- +-+-.+.+...|.++.||| ..|+++.-...-+|...+
T Consensus 72 -----------------~aDK~VI~W~~kl-EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~q 123 (1081)
T KOG1538|consen 72 -----------------SADKSVIIWTSKL-EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQ 123 (1081)
T ss_pred -----------------CCceeEEEecccc-cceeeeccCCeeeEeecCchHHHhhhcchhhccccChhh
Confidence 1357899998752 2222344557899999999 678877767778887554
No 228
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.02 E-value=0.00068 Score=77.65 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=60.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCe--EEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN--INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~--IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
..|.+||+.++.. ..+..|.......+|+|||+.|+.++.++.. |.++++.. + ....+.
T Consensus 258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-------~-----------~~~~l~ 318 (417)
T TIGR02800 258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-------G-----------EVRRLT 318 (417)
T ss_pred ccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-------C-----------CEEEee
Confidence 4688888887653 4455565555678999999999877765443 44445421 1 112222
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCC---eEEEEecCC
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 462 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~dG---TVhIw~I~~ 462 (994)
.+ ...+..++|||||++|+.++.++ .|.+|++..
T Consensus 319 ~~--~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 319 FR--GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred cC--CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 11 12456789999999999998876 566666543
No 229
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.00 E-value=1.5e-05 Score=91.38 Aligned_cols=182 Identities=18% Similarity=0.279 Sum_probs=122.6
Q ss_pred CEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEE--EEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCcc
Q 001935 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVA--VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~-S~V~sV~~S~~iLA--Vgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~g 248 (994)
+-++--|+.+|+.|..+.-. +.+..++-||.--+ +|- .++|-+|.....+.+-.+.+|..| ..
T Consensus 231 G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~-------------V~ 297 (545)
T KOG1272|consen 231 GFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGP-------------VS 297 (545)
T ss_pred CceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCC-------------cc
Confidence 45788899999999888654 57778888884333 333 457999998887877777777653 12
Q ss_pred ceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCC
Q 001935 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (994)
Q Consensus 249 plAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~ 328 (994)
.+|+.+ . |.
T Consensus 298 siAv~~----------------------------------~-G~------------------------------------ 306 (545)
T KOG1272|consen 298 SIAVDR----------------------------------G-GR------------------------------------ 306 (545)
T ss_pred eEEECC----------------------------------C-Cc------------------------------------
Confidence 233321 0 11
Q ss_pred ccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCC
Q 001935 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS 408 (994)
Q Consensus 329 ~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~s 408 (994)
+ .++++.|..|+|||+.+-..+.++.. ..|.+.|+||..|. || +|. |..+.||.=.-. .+
T Consensus 307 --------Y----MaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl-LA-~~~-G~~v~iw~d~~~--~s-- 366 (545)
T KOG1272|consen 307 --------Y----MATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL-LA-LSY-GDHVQIWKDALK--GS-- 366 (545)
T ss_pred --------E----EeecccccceeEeeeccccccceeec-CCCccccccccccc-ee-eec-CCeeeeehhhhc--CC--
Confidence 0 11345688999999998765555554 46889999998875 33 444 677999974321 01
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcccc
Q 001935 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ 470 (994)
Q Consensus 409 G~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~ 470 (994)
+ .....|.-++ ....|.++.|.|--..|.+|...|-.-| |-|..|++++.
T Consensus 367 ~--------~~~~pYm~H~--~~~~V~~l~FcP~EDvLGIGH~~G~tsi--lVPGsGePN~D 416 (545)
T KOG1272|consen 367 G--------HGETPYMNHR--CGGPVEDLRFCPYEDVLGIGHAGGITSI--LVPGSGEPNYD 416 (545)
T ss_pred C--------CCCcchhhhc--cCcccccceeccHHHeeeccccCCceeE--eccCCCCCCcc
Confidence 1 1123333222 3458999999999999999999998777 55888888764
No 230
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.97 E-value=0.0002 Score=76.90 Aligned_cols=99 Identities=13% Similarity=0.259 Sum_probs=73.1
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEE-CCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 001935 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCF-DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaF-SPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~ 423 (994)
++.||.+.-||+++++....+++|+.-|-++.- +.+|. +.|+++||+ +||||.++. +++.
T Consensus 132 AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGt-vRvWd~kt~-----------------k~v~ 192 (325)
T KOG0649|consen 132 AGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGT-VRVWDTKTQ-----------------KHVS 192 (325)
T ss_pred ecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-eeecCCCcc-EEEEecccc-----------------ceeE
Confidence 457999999999999999999999999999999 66666 558999887 899999752 2222
Q ss_pred E--------EecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 424 K--------LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 424 ~--------L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
. +.|-+-..+|-+++- |..||++|+.. .+.||.+.....
T Consensus 193 ~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp-~lslwhLrsse~ 239 (325)
T KOG0649|consen 193 MIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP-KLSLWHLRSSES 239 (325)
T ss_pred EeccccChhhcCcccCceeEEEec--cCceEEecCCC-ceeEEeccCCCc
Confidence 2 223222345666665 45699888755 467999876543
No 231
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.92 E-value=0.0026 Score=68.65 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=53.5
Q ss_pred CCEEEEEECCCCeEEEEEeCCC-cEEEEEe---cCCeEEEEeCCeEEEEECCCCceeEEEeecCCcccc
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRS-SVCMVRC---SPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLA 236 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S-~V~sV~~---S~~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~ 236 (994)
++.+.-||+++|+.-.+++.++ .|.+|.. ++++|.-+-|+++++||..|.++..+|..+.+|.+.
T Consensus 135 D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~l 203 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLL 203 (325)
T ss_pred CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhc
Confidence 3688999999999999998765 7777766 447777788889999999999999999877766443
No 232
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.89 E-value=0.0016 Score=75.51 Aligned_cols=96 Identities=19% Similarity=0.197 Sum_probs=57.4
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCe--EEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN--INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~--IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
..|.+||+.+++. ..+..+........|+|||+.|+..+..+.. |.++++.. |. .+.+ .+
T Consensus 267 ~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-------g~--------~~~l-t~- 328 (430)
T PRK00178 267 PEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-------GR--------AERV-TF- 328 (430)
T ss_pred ceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-------CC--------EEEe-ec-
Confidence 3578889887764 3455565566678999999988877754433 44445421 21 1122 12
Q ss_pred cccccccEEEEEEccCCCEEEEEeCC-CeEEEEecCCCCC
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGG 465 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~d-GTVhIw~I~~~gg 465 (994)
.+. .....+|||||++|+..+.+ +..+||-++..++
T Consensus 329 ~~~---~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 329 VGN---YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred CCC---CccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 121 23457899999999988764 4334444443333
No 233
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=0.00015 Score=81.38 Aligned_cols=78 Identities=19% Similarity=0.326 Sum_probs=62.3
Q ss_pred eccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 001935 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ 444 (994)
Q Consensus 365 ~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~ 444 (994)
-++| .||.+|++++||+.|+|||-++..|+|||... |. ...|.. +|. ..+.-+-||||+.
T Consensus 192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-------g~--------~~pL~~--~gl--gg~slLkwSPdgd 251 (445)
T KOG2139|consen 192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-------GQ--------KIPLIP--KGL--GGFSLLKWSPDGD 251 (445)
T ss_pred CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-------CC--------cccccc--cCC--CceeeEEEcCCCC
Confidence 3456 79999999999999999999999999999854 21 123332 332 3577899999999
Q ss_pred EEEEEeCCCeEEEEecCC
Q 001935 445 WIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 445 ~LAsgS~dGTVhIw~I~~ 462 (994)
+|.+++-|++.+||..+.
T Consensus 252 ~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQ 269 (445)
T ss_pred EEEEecccceeeeehhcc
Confidence 999999999999997554
No 234
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.85 E-value=0.0004 Score=83.59 Aligned_cols=101 Identities=17% Similarity=0.082 Sum_probs=72.1
Q ss_pred ccCCCCeEEEEECCCC--------cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCcccc
Q 001935 344 DMDNAGIVVVKDFVTR--------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~--------~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~ 415 (994)
-|...|.|.-=.-... +.+.++..|.++|.++.|+|=+..+..++-| ..+|||.-... .
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gD-W~vriWs~~~~------~------ 431 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGD-WTVRIWSEDVI------A------ 431 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeecc-ceeEeccccCC------C------
Confidence 4556777665222221 2345777899999999999999888877774 45999996421 1
Q ss_pred CCcceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEecCCC
Q 001935 416 NSSHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 416 ~~s~~~l~~L~RG~t~a~I~sIaFSpDg-~~LAsgS~dGTVhIw~I~~~ 463 (994)
..++.+.+. .+.|.+++|||-- ..+|++..||+++||+|...
T Consensus 432 ----~Pl~~~~~~--~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 432 ----SPLLSLDSS--PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ----Ccchhhhhc--cceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 255555553 3459999999975 57788888999999998653
No 235
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.80 E-value=0.021 Score=67.06 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=35.4
Q ss_pred EEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeC----CeEEEEECCCCc
Q 001935 174 AVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLA----TQIYCFDALTLE 222 (994)
Q Consensus 174 tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVgl~----~~I~IwDa~Tle 222 (994)
.|.++|+.+|+......+...+...+++| +.|+.... .+|+++|+.+.+
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred EEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 68999999998766556777666677776 46665443 369999987765
No 236
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.002 Score=75.92 Aligned_cols=53 Identities=28% Similarity=0.480 Sum_probs=44.2
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-----CCeEEEEeCC
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-----GNNINIFRIM 400 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~d-----Gt~IrVwdi~ 400 (994)
.-.|.|-|||..+.+.+..+.+-.. +-..|+|||.+++||..- +..|+||+..
T Consensus 333 NL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 333 NLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 3568899999999999999998755 457899999999999874 4559999983
No 237
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.76 E-value=0.0047 Score=71.29 Aligned_cols=177 Identities=14% Similarity=0.091 Sum_probs=107.1
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEE-EEEecC--CeEEE-EeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCcc
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVC-MVRCSP--RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~-sV~~S~--~iLAV-gl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~g 248 (994)
+.|.+.|..+.+.+.++.....+. .+.+++ +.+.| +.++.|.++|+.+++.+.++.....| .
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~--------------~ 81 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP--------------R 81 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE--------------E
T ss_pred CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc--------------c
Confidence 689999999999999998766553 466776 55555 44678999999999988887642221 1
Q ss_pred ceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCC
Q 001935 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (994)
Q Consensus 249 plAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~ 328 (994)
.++++ . ++..+++
T Consensus 82 ~i~~s-------~---------------------------DG~~~~v--------------------------------- 94 (369)
T PF02239_consen 82 GIAVS-------P---------------------------DGKYVYV--------------------------------- 94 (369)
T ss_dssp EEEE------------------------------------TTTEEEE---------------------------------
T ss_pred eEEEc-------C---------------------------CCCEEEE---------------------------------
Confidence 12222 1 2111111
Q ss_pred ccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC-------CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCC
Q 001935 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-------TSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 329 ~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aH-------tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (994)
..-.++.|.|+|..+.+++.++... .+.+.+|..+|....++.+-.+...|-+-|...
T Consensus 95 ---------------~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 95 ---------------ANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp ---------------EEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred ---------------EecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 1124678999999999999888754 346889999999997777766544354445432
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE-eCCCeEEEEecCCC
Q 001935 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPF 463 (994)
Q Consensus 402 ~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsg-S~dGTVhIw~I~~~ 463 (994)
. .......+..| ....+..|+||++|++++ ..+..+-+++....
T Consensus 160 ~---------------~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 160 P---------------KNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp S---------------SCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred c---------------cccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccc
Confidence 1 00122233333 246789999999987664 55667888887654
No 238
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.75 E-value=0.0003 Score=81.05 Aligned_cols=100 Identities=20% Similarity=0.319 Sum_probs=74.1
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
..+|.|.|.|..+.+++..|..+..+-..++|+|||++|..++.+| .|.++|+.. + +.+.++
T Consensus 13 ~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg-~vsviD~~~-------~----------~~v~~i 74 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDG-TVSVIDLAT-------G----------KVVATI 74 (369)
T ss_dssp GGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTS-EEEEEETTS-------S----------SEEEEE
T ss_pred cCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCC-eEEEEECCc-------c----------cEEEEE
Confidence 4578999999999999999997766556688999999999999876 599999864 2 466777
Q ss_pred ecccccccEEEEEEccCCCEEEEEe-CCCeEEEEecCCCCCC
Q 001935 426 HRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGD 466 (994)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~LAsgS-~dGTVhIw~I~~~gg~ 466 (994)
+-|. .-.++++|+||+||+++. ..+++.|++....+..
T Consensus 75 ~~G~---~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 75 KVGG---NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp E-SS---EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred ecCC---CcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 6664 357899999999999876 6899999998765443
No 239
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.75 E-value=0.0022 Score=75.69 Aligned_cols=206 Identities=16% Similarity=0.189 Sum_probs=122.2
Q ss_pred EeCCCcEEEEEecC---CeEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccC-
Q 001935 189 LRFRSSVCMVRCSP---RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN- 262 (994)
Q Consensus 189 L~f~S~V~sV~~S~---~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~- 262 (994)
++.+..-.++..+. +++.+|....||-+++..+.-+.-+.+... +.+.+.+++ -+||+++.
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~-------------~lN~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSG-------------ELNVVSINEEHGLLACGTED 196 (703)
T ss_pred eecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccc-------------cceeeeecCccceEEecccC
Confidence 33343344555543 788889888999999988876554443211 134455555 56777763
Q ss_pred -CeeeccCCccC-CCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccc
Q 001935 263 -TLLLSNSGRLS-PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRH 340 (994)
Q Consensus 263 -~~~iwd~G~~s-~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~ 340 (994)
.+-.||.-..+ ...+.. ..+....|..... .+++++.|+.++ +
T Consensus 197 g~VEfwDpR~ksrv~~l~~-~~~v~s~pg~~~~------------------------------~svTal~F~d~g----L 241 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDA-ASSVNSHPGGDAA------------------------------PSVTALKFRDDG----L 241 (703)
T ss_pred ceEEEecchhhhhheeeec-ccccCCCcccccc------------------------------CcceEEEecCCc----e
Confidence 35578731000 000000 0000000000000 012233443322 2
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccC--CCCeEEEEECCC--CCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccC
Q 001935 341 AGADMDNAGIVVVKDFVTRAIISQFKAH--TSPISALCFDPS--GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 416 (994)
Q Consensus 341 ~~as~s~dG~V~VwDl~s~~~i~~~~aH--tspIsaLaFSPd--GtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~ 416 (994)
.++-|...|.|.|||+.+.+.+ .++.| ..||..|.|.+. +..|+|.. -+.++|||-.+ |.
T Consensus 242 ~~aVGts~G~v~iyDLRa~~pl-~~kdh~~e~pi~~l~~~~~~~q~~v~S~D--k~~~kiWd~~~-------Gk------ 305 (703)
T KOG2321|consen 242 HVAVGTSTGSVLIYDLRASKPL-LVKDHGYELPIKKLDWQDTDQQNKVVSMD--KRILKIWDECT-------GK------ 305 (703)
T ss_pred eEEeeccCCcEEEEEcccCCce-eecccCCccceeeecccccCCCceEEecc--hHHhhhccccc-------CC------
Confidence 3456778999999999988764 34455 469999999877 45676665 47899999643 31
Q ss_pred CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 417 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 417 ~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
..... -....|.+++|-|++..+.++-..+.+|.|-|...|.
T Consensus 306 ----~~asi---Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 306 ----PMASI---EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGP 347 (703)
T ss_pred ----ceeec---cccCCcCceeeecCCceEEEecCCCcceeEEccccCC
Confidence 11111 1224589999999999999999999999999877654
No 240
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=7e-05 Score=87.23 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=70.1
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 001935 362 ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (994)
Q Consensus 362 i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSp 441 (994)
-+.|.+|++=|++|.|+.||.+||++|. ++-+.|||... +++++..+.|++ +.|.++.|=|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSD-D~r~ivWd~~~-----------------~KllhsI~TgHt-aNIFsvKFvP 103 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSD-DTRLIVWDPFE-----------------YKLLHSISTGHT-ANIFSVKFVP 103 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCC-cceEEeecchh-----------------cceeeeeecccc-cceeEEeeec
Confidence 3678899999999999999999999998 56699999642 256777778865 7799999998
Q ss_pred C--CCEEEEEeCCCeEEEEecCC
Q 001935 442 Y--SQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 442 D--g~~LAsgS~dGTVhIw~I~~ 462 (994)
. .+.|++|..|..||||+++.
T Consensus 104 ~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 104 YTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred cCCCeEEEeccCcceEEEEeccc
Confidence 4 57899999999999999985
No 241
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.74 E-value=0.00011 Score=90.81 Aligned_cols=97 Identities=22% Similarity=0.222 Sum_probs=77.8
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
+.+..-|.|.+|+....+.-..+.+|.+.|.++.|+-||+++||+|. ++.||+|.+.... +.-
T Consensus 149 ~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd-DRsiRlW~i~s~~----------------~~~ 211 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD-DRSIRLWPIDSRE----------------VLG 211 (967)
T ss_pred EeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec-Ccceeeeeccccc----------------ccC
Confidence 45667789999999855444479999999999999999999999999 6889999996420 000
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 001935 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I 460 (994)
... -| |.|.||.+.|.|. .|++++.|-|+++|..
T Consensus 212 ~~~-fg-HsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 212 CTG-FG-HSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred ccc-cc-ccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 111 24 4689999999998 9999999999999943
No 242
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.72 E-value=0.00075 Score=76.23 Aligned_cols=220 Identities=18% Similarity=0.157 Sum_probs=121.2
Q ss_pred CCEEEEEECC------CCeEEEEEe--CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCc
Q 001935 172 PTAVRFYSFQ------SHCYEHVLR--FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGA 240 (994)
Q Consensus 172 p~tVrLWDlk------tge~V~tL~--f~S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~ 240 (994)
+..+++|++. +-+.|.... +++.|++++|+. ++|..|. .++|.++|+.+.+.++......+. |
T Consensus 77 D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~-----~- 150 (609)
T KOG4227|consen 77 DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNR-----G- 150 (609)
T ss_pred cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcc-----c-
Confidence 3689999974 334454443 347999999986 4555544 568999999998877665433221 0
Q ss_pred cccccCccceEEcc--cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccc
Q 001935 241 VGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKY 316 (994)
Q Consensus 241 ~~vnv~~gplAlgp--RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y 316 (994)
++ --|...| +.+|.... .+.+|+.- -++.+..+ +-++.+|. .+ |
T Consensus 151 -~V----Y~m~~~P~DN~~~~~t~~~~V~~~D~R-d~~~~~~~--~~~AN~~~----------------------~F--~ 198 (609)
T KOG4227|consen 151 -DV----YHMDQHPTDNTLIVVTRAKLVSFIDNR-DRQNPISL--VLPANSGK----------------------NF--Y 198 (609)
T ss_pred -ce----eecccCCCCceEEEEecCceEEEEecc-CCCCCCce--eeecCCCc----------------------cc--e
Confidence 11 1233444 44554443 35677631 11111100 00011110 00 1
Q ss_pred cccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE----EEEeccCC---CCeEEEEECCCCCEEEEEEc
Q 001935 317 CQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI----ISQFKAHT---SPISALCFDPSGTLLVTASV 389 (994)
Q Consensus 317 ~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~----i~~~~aHt---spIsaLaFSPdGtlLATAS~ 389 (994)
...+.|. .. ..++.....|-+.|||....+. ...+++-. ..-....|+|+|+.|.+--.
T Consensus 199 t~~F~P~-----------~P---~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 199 TAEFHPE-----------TP---ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred eeeecCC-----------Cc---eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence 1111221 11 1234556778899999986431 12222221 12245789999998876554
Q ss_pred CCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-----ccc-cccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 390 YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-----GIT-SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 390 dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R-----G~t-~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
|.---.||+.. +.++.|+- |.- .+.|.+++|-.| .-+++||++=.+|||+|...
T Consensus 265 -~~~P~~~D~~S------------------~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 265 -GKCPLYFDFIS------------------QRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred -cCCCEEeeeec------------------ccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCC
Confidence 55555777742 12222321 221 246889999965 55999999999999999653
No 243
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.0026 Score=75.21 Aligned_cols=53 Identities=21% Similarity=0.449 Sum_probs=46.7
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCC-----CCEEEEEEcCCCeEEEEeCC
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPS-----GTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPd-----GtlLATAS~dGt~IrVwdi~ 400 (994)
.+.|.+||+.+++++.+|.+|.+||++++|--+ |.++.+...-++.|.+|-+.
T Consensus 163 s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 163 SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 468999999999999999999999999999888 88777766657889999875
No 244
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0017 Score=73.79 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=62.8
Q ss_pred ccCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 344 DMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~~i~~-~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
.+..-|.+..||+..++.+.. |++-++.|++|..+|.+.+||+++- ++.+||||+... +.+
T Consensus 264 ~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GL-DRyvRIhD~ktr-----------------kll 325 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGL-DRYVRIHDIKTR-----------------KLL 325 (412)
T ss_pred EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeecc-ceeEEEeecccc-----------------hhh
Confidence 346678889999999988766 8899999999999999999999999 788999999641 345
Q ss_pred EEEecccccccEEEEEEccCCCE
Q 001935 423 YKLHRGITSATIQDICFSHYSQW 445 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~ 445 (994)
++.+-+ ..+++|-|.++-.+
T Consensus 326 ~kvYvK---s~lt~il~~~~~n~ 345 (412)
T KOG3881|consen 326 HKVYVK---SRLTFILLRDDVNI 345 (412)
T ss_pred hhhhhh---ccccEEEecCCccc
Confidence 544322 34677877766443
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.65 E-value=0.00073 Score=83.80 Aligned_cols=103 Identities=15% Similarity=0.162 Sum_probs=82.9
Q ss_pred cccCCCCeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceE
Q 001935 343 ADMDNAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~-~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~ 421 (994)
++.+.|..+++|++.+.+... +.-+|+..|..++|.|+ +|+|+++| -+.|||+.. | ..
T Consensus 191 ~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~ged-ctcrvW~~~--------~----------~~ 249 (967)
T KOG0974|consen 191 ASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGED-CTCRVWGVN--------G----------TQ 249 (967)
T ss_pred EEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccc-eEEEEEecc--------c----------ce
Confidence 356789999999999988765 77899999999999999 99999995 559999763 2 12
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCc
Q 001935 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS 467 (994)
Q Consensus 422 l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~ 467 (994)
|.++ +++-...||.++-.++.-++.++++||++++|++...+-+.
T Consensus 250 l~~y-~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~ 294 (967)
T KOG0974|consen 250 LEVY-DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEG 294 (967)
T ss_pred ehhh-hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccccc
Confidence 2222 34344569999999999999999999999999987655443
No 246
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.61 E-value=0.00076 Score=78.76 Aligned_cols=85 Identities=15% Similarity=0.294 Sum_probs=64.6
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 001935 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG 428 (994)
|.+.|.-+.....+..++||.+-|.++.|++...++|||++| -.++|||.. | +.||.- .
T Consensus 166 ~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED-~kfKvWD~~--------G----------~~Lf~S--~ 224 (737)
T KOG1524|consen 166 GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGED-FRFKIWDAQ--------G----------ANLFTS--A 224 (737)
T ss_pred CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCc-eeEEeeccc--------C----------cccccC--C
Confidence 455566666666677899999999999999999999999995 459999964 4 355543 2
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEE
Q 001935 429 ITSATIQDICFSHYSQWIAIVSSKGTCH 456 (994)
Q Consensus 429 ~t~a~I~sIaFSpDg~~LAsgS~dGTVh 456 (994)
.+...|++++|.|| +.++.+|.. |.+
T Consensus 225 ~~ey~ITSva~npd-~~~~v~S~n-t~R 250 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE-KDYLLWSYN-TAR 250 (737)
T ss_pred hhccceeeeeeccc-cceeeeeee-eee
Confidence 24457999999999 777777643 555
No 247
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.60 E-value=0.02 Score=74.39 Aligned_cols=72 Identities=10% Similarity=0.104 Sum_probs=51.2
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-ccc-----------ccccEEEEEEc
Q 001935 373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGI-----------TSATIQDICFS 440 (994)
Q Consensus 373 saLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~-RG~-----------t~a~I~sIaFS 440 (994)
..|+|+++|+++++-+. ++.|++||.... .+..+- .|. .-.....|+++
T Consensus 807 ~Gvavd~dG~LYVADs~-N~rIrviD~~tg------------------~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd 867 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSY-NHKIKKLDPATK------------------RVTTLAGTGKAGFKDGKALKAQLSEPAGLALG 867 (1057)
T ss_pred ceeeEeCCCcEEEEECC-CCEEEEEECCCC------------------eEEEEeccCCcCCCCCcccccccCCceEEEEe
Confidence 47999999997766555 667999997531 111111 110 00136789999
Q ss_pred cCCCEEEEEeCCCeEEEEecCCC
Q 001935 441 HYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 441 pDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
+||+.+++-+.+++|++|++...
T Consensus 868 ~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 868 ENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CCCCEEEEECCCCEEEEEECCCC
Confidence 99999999999999999998764
No 248
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.55 E-value=0.00029 Score=54.03 Aligned_cols=37 Identities=32% Similarity=0.440 Sum_probs=31.7
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 001935 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
++++| +|+ ...|++|+|+|++++|++++.|++|+||+
T Consensus 3 ~~~~~-~~h-~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTF-RGH-SSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEE-ESS-SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEE-cCC-CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 55666 453 46799999999999999999999999996
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.55 E-value=0.063 Score=61.09 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=38.1
Q ss_pred CCCeEEEEECC--CC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCC
Q 001935 347 NAGIVVVKDFV--TR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 347 ~dG~V~VwDl~--s~--~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (994)
....|.+|++. ++ +.+..+.....--..++|+|+|++|+.+..++..|.||++.+
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 35567777773 22 234444443333578999999999999999888999999854
No 250
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.54 E-value=0.0034 Score=69.93 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=60.1
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCc---ceEEEEEecccccccEEEEEEccCC
Q 001935 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS---HVHLYKLHRGITSATIQDICFSHYS 443 (994)
Q Consensus 367 aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s---~~~l~~L~RG~t~a~I~sIaFSpDg 443 (994)
.|.+.|.+|.+.|++-+||++|.|+. .|||..---. ... --...+|... .+++.++.+ ....|..+.|||+|
T Consensus 144 PirStv~sldWhpnnVLlaaGs~D~k-~rVfSayIK~-Vde-kpap~pWgsk~PFG~lm~E~~~--~ggwvh~v~fs~sG 218 (361)
T KOG1523|consen 144 PIRSTVTSLDWHPNNVLLAAGSTDGK-CRVFSAYIKG-VDE-KPAPTPWGSKMPFGQLMSEASS--SGGWVHGVLFSPSG 218 (361)
T ss_pred ccccceeeeeccCCcceecccccCcc-eeEEEEeeec-ccc-CCCCCCCccCCcHHHHHHhhcc--CCCceeeeEeCCCC
Confidence 45678999999999999999999776 8999641000 000 0001123322 234445532 34689999999999
Q ss_pred CEEEEEeCCCeEEEEe
Q 001935 444 QWIAIVSSKGTCHVFV 459 (994)
Q Consensus 444 ~~LAsgS~dGTVhIw~ 459 (994)
..||-.+.|.++.+=+
T Consensus 219 ~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 219 NRLAWVGHDSTVSFVD 234 (361)
T ss_pred CEeeEecCCCceEEee
Confidence 9999999999998744
No 251
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.52 E-value=0.0011 Score=73.99 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=66.9
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc-----------------------------------C
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV-----------------------------------Y 390 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~-----------------------------------d 390 (994)
..+-.|+||.+.+.+.. .++--...+--++|+|||++.|.++. |
T Consensus 111 eF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd 189 (447)
T KOG4497|consen 111 EFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD 189 (447)
T ss_pred cceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC
Confidence 45678999999887643 33333445677899999999998876 3
Q ss_pred CCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 001935 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 391 Gt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
|..+-|||.--. ..+|.++||. .|..++|||-+|+||+|+.|+.++|-+
T Consensus 190 g~~laVwd~~Le-----------------ykv~aYe~~l---G~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 190 GNWLAVWDNVLE-----------------YKVYAYERGL---GLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred CcEEEEecchhh-----------------heeeeeeecc---ceeEEEeccccceEEeeccchhhhhhc
Confidence 444555553110 2455566764 488999999999999999999998844
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.51 E-value=0.0071 Score=71.02 Aligned_cols=75 Identities=21% Similarity=0.154 Sum_probs=45.5
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 001935 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (994)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS 450 (994)
.....+|+|||+.||..+..+...+||.+... ..+ .....+..+ ...+...+|||||++|+..+
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~----~~g----------~~~~~lt~~--~~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID----PEG----------QSPRLLTKK--YRNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECc----ccc----------cceEEeccC--CCCccceeECCCCCEEEEEE
Confidence 34567999999988887754333567754211 001 012222221 12457889999999999877
Q ss_pred CCC---eEEEEecC
Q 001935 451 SKG---TCHVFVLS 461 (994)
Q Consensus 451 ~dG---TVhIw~I~ 461 (994)
.++ .|++|++.
T Consensus 346 ~~~g~~~I~v~dl~ 359 (428)
T PRK01029 346 VIKGVRQICVYDLA 359 (428)
T ss_pred cCCCCcEEEEEECC
Confidence 652 46666654
No 253
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.51 E-value=0.0022 Score=75.57 Aligned_cols=122 Identities=16% Similarity=0.260 Sum_probs=87.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEE-E--
Q 001935 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK-L-- 425 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~-L-- 425 (994)
-.|.=+++..|.-+.-|.-...+|+++..++--.|||++..+|. +-.||-..- +.-| .|.- .
T Consensus 155 ~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~-VEfwDpR~k---srv~-----------~l~~~~~v 219 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGV-VEFWDPRDK---SRVG-----------TLDAASSV 219 (703)
T ss_pred cceEEEEccccccccccccccccceeeeecCccceEEecccCce-EEEecchhh---hhhe-----------eeeccccc
Confidence 35777788899888888888899999999999999999998776 899996431 1001 1110 0
Q ss_pred --eccccc-ccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcccccccCCCCCCccCCccCCCcccC
Q 001935 426 --HRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCT 492 (994)
Q Consensus 426 --~RG~t~-a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~s~~~~~~~~p~~~lpw~~~ 492 (994)
+-|... ..|++|.|+.||-.+|+|+..|.|.||+|.... +.-+.-|. .-.|+..|.|..+
T Consensus 220 ~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~-pl~~kdh~------~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 220 NSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK-PLLVKDHG------YELPIKKLDWQDT 282 (703)
T ss_pred CCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC-ceeecccC------Cccceeeeccccc
Confidence 012222 259999999999999999999999999997643 33334443 4567777776443
No 254
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.49 E-value=0.14 Score=66.04 Aligned_cols=98 Identities=14% Similarity=0.223 Sum_probs=66.0
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CeEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dG--t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
-..++||+-+ |.+-.+-..-.+-=.+|+|-|+|.++|++-..+ +.|..|.- | |- .+--+.|
T Consensus 236 ~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr------N--GL--------rhgeF~l 298 (928)
T PF04762_consen 236 RRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER------N--GL--------RHGEFTL 298 (928)
T ss_pred eeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec------C--Cc--------EeeeEec
Confidence 3679999977 544333332222234689999999999987632 44556653 2 31 1223555
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
+.......|..|+|++||..||+.-.|. |.+|....|
T Consensus 299 ~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 299 RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 5433445799999999999999987555 999998876
No 255
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.48 E-value=0.018 Score=73.10 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=64.0
Q ss_pred cCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCC---CEEEEEEcCC-CeEEEEeCCCCcccCCCCCCccccCCcc
Q 001935 345 MDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSG---TLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~-aHtspIsaLaFSPdG---tlLATAS~dG-t~IrVwdi~p~~~~~~sG~~~~~~~~s~ 419 (994)
|...|.+.+||+.=+..+..+. +|..+|..|+..|-- ...++++..+ +-+-+|++...
T Consensus 1213 Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g----------------- 1275 (1431)
T KOG1240|consen 1213 GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG----------------- 1275 (1431)
T ss_pred ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC-----------------
Confidence 3456788999998877765554 344788877766543 4666666533 34889998642
Q ss_pred eEEEEEecc-----------------cccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 420 VHLYKLHRG-----------------ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 420 ~~l~~L~RG-----------------~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
.+-+.|.-+ ...-.....++.--+.++.+|+.|..|+.|+.....
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 112222221 000012234555567899999999999999986543
No 256
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.44 E-value=0.0017 Score=81.75 Aligned_cols=92 Identities=13% Similarity=0.307 Sum_probs=70.9
Q ss_pred CcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEE
Q 001935 359 RAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDI 437 (994)
Q Consensus 359 ~~~i~~~~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sI 437 (994)
|..+++|..|...|..++.++.- .+++|+|.||+ ||||+..... |. ..+.+...++.+ ....+..+
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGt-VKvW~~~k~~-----~~-----~~s~rS~ltys~--~~sr~~~v 1104 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGT-VKVWNLRKLE-----GE-----GGSARSELTYSP--EGSRVEKV 1104 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCce-EEEeeehhhh-----cC-----cceeeeeEEEec--cCCceEEE
Confidence 67899999999999999887555 99999999887 9999986421 10 012233333332 33468899
Q ss_pred EEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 438 CFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 438 aFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
.+.+.+..+|+++.||.|++++|+.+
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~ 1130 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHY 1130 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEcccc
Confidence 99999999999999999999999986
No 257
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.0032 Score=73.22 Aligned_cols=121 Identities=17% Similarity=0.138 Sum_probs=79.1
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 51 ~~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
..+.|++-|.-+.|++ .+.+|+.|.++- +.|||...........++|...|.-.+|+| |...
T Consensus 137 kL~~H~GcVntV~FN~-------~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP----------~s~d 199 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQ-------RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIP----------FSGD 199 (559)
T ss_pred cccCCCCccceeeecc-------cCceeeccCccceEEeehhhccCcccccccccccchhhhhccC----------CCCC
Confidence 4577899999999986 567999998875 899999765555666778888888888887 4555
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEEC-CCCeEEEE---EeCCCcEEEEEecC---
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-QSHCYEHV---LRFRSSVCMVRCSP--- 202 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDl-ktge~V~t---L~f~S~V~sV~~S~--- 202 (994)
+++ +.++. ++.|++=.+ .++.+..+ -+++++|.-++.-|
T Consensus 200 ~ti-~~~s~---------------------------------dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp 245 (559)
T KOG1334|consen 200 RTI-VTSSR---------------------------------DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP 245 (559)
T ss_pred cCc-eeccc---------------------------------cCceeeeeeccccceecceecccccCccceeeecCCCC
Confidence 565 32221 123443332 23333322 25677887777655
Q ss_pred C-eEEEEeCCeEEEEECCCCc
Q 001935 203 R-IVAVGLATQIYCFDALTLE 222 (994)
Q Consensus 203 ~-iLAVgl~~~I~IwDa~Tle 222 (994)
. ++..|.+.-+.-+|+++..
T Consensus 246 ~~f~S~geD~~v~~~Dlr~~~ 266 (559)
T KOG1334|consen 246 KPFLSCGEDAVVFHIDLRQDV 266 (559)
T ss_pred CcccccccccceeeeeeccCC
Confidence 3 5555666667777876543
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.40 E-value=0.012 Score=69.77 Aligned_cols=98 Identities=20% Similarity=0.351 Sum_probs=78.2
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 001935 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~ 423 (994)
+++.|++|..|+...+..++.+++-+..++.++.+|||..|++||. .|+||++.. + ..+.
T Consensus 119 S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~---~ik~~~~~~-------k----------evv~ 178 (541)
T KOG4547|consen 119 SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR---QIKVLDIET-------K----------EVVI 178 (541)
T ss_pred ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc---eEEEEEccC-------c----------eEEE
Confidence 5678999999999999999999999999999999999999999984 599999964 2 3444
Q ss_pred EEecccccccEEEEEEccC-----CCEEEEE-eCCCeEEEEecCCC
Q 001935 424 KLHRGITSATIQDICFSHY-----SQWIAIV-SSKGTCHVFVLSPF 463 (994)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpD-----g~~LAsg-S~dGTVhIw~I~~~ 463 (994)
+| .| |...|.+++|--+ |.++.++ -...-+-+|.+...
T Consensus 179 ~f-tg-h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 179 TF-TG-HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred Ee-cC-CCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 55 45 4578999999987 6666553 33334678887653
No 259
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.28 E-value=0.042 Score=62.03 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=54.5
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---cc-----cccccE---EEE
Q 001935 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RG-----ITSATI---QDI 437 (994)
Q Consensus 369 tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~---RG-----~t~a~I---~sI 437 (994)
-+.|+.+.|+++|+|++|-+- -+++|||+.-. .. ....|.++ |- ..+..| ..+
T Consensus 272 IsSISDvKFs~sGryilsRDy--ltvk~wD~nme------~~--------pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 272 ISSISDVKFSHSGRYILSRDY--LTVKLWDLNME------AK--------PVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred hhhhhceEEccCCcEEEEecc--ceeEEEecccc------CC--------cceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 357899999999999998875 45999999321 10 01112211 10 001112 468
Q ss_pred EEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 438 CFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 438 aFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
+||-|+.++++||-....|||++...
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred EEcCCcceEecccccceEEEecCCCC
Confidence 99999999999999999999997653
No 260
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.039 Score=65.33 Aligned_cols=288 Identities=11% Similarity=0.116 Sum_probs=154.1
Q ss_pred CCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCC
Q 001935 72 SVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (994)
Q Consensus 72 ~~~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~ 151 (994)
+|.+.+|++=-..|+++|--+.-+.++ ..-...|.++.|+|+- .+|+..+...
T Consensus 219 SP~GTYL~t~Hk~GI~lWGG~~f~r~~---RF~Hp~Vq~idfSP~E-------------kYLVT~s~~p----------- 271 (698)
T KOG2314|consen 219 SPKGTYLVTFHKQGIALWGGESFDRIQ---RFYHPGVQFIDFSPNE-------------KYLVTYSPEP----------- 271 (698)
T ss_pred cCCceEEEEEeccceeeecCccHHHHH---hccCCCceeeecCCcc-------------ceEEEecCCc-----------
Confidence 467888888888999999765433332 2223569999988764 3655443211
Q ss_pred CccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CC-----cEEEEEecCCeEEEEeCCeEEEEECCCCceeE
Q 001935 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RS-----SVCMVRCSPRIVAVGLATQIYCFDALTLENKF 225 (994)
Q Consensus 152 ~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~S-----~V~sV~~S~~iLAVgl~~~I~IwDa~Tle~l~ 225 (994)
..+..+.. -+..++|||+++|...+.+.. ++ ++.....+.+++|-...+.|.||+...+.++-
T Consensus 272 --~~~~~~d~---------e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld 340 (698)
T KOG2314|consen 272 --IIVEEDDN---------EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLD 340 (698)
T ss_pred --cccCcccC---------CCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeec
Confidence 00111111 136899999999998888754 22 44555566689998888999999987655321
Q ss_pred EEeecCCccccCCCccccccCccceEEcc--cEEEEccC-CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhh
Q 001935 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS 302 (994)
Q Consensus 226 tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~-~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dss 302 (994)
.-+.. +. +.--+.++| ..|||=.. +-.+. .++ .+..-|+...+-. ...
T Consensus 341 ---~Kslk---------i~-gIr~FswsP~~~llAYwtpe~~~~p--arv----------tL~evPs~~~iRt----~nl 391 (698)
T KOG2314|consen 341 ---KKSLK---------IS-GIRDFSWSPTSNLLAYWTPETNNIP--ARV----------TLMEVPSKREIRT----KNL 391 (698)
T ss_pred ---ccccC---------Cc-cccCcccCCCcceEEEEcccccCCc--ceE----------EEEecCccceeee----ccc
Confidence 11110 00 123356666 67887431 00000 000 0000011111100 000
Q ss_pred hhhhcccceeeccccccccCCCCCCCccCCCccccccccc-----c-ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEE
Q 001935 303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG-----A-DMDNAGIVVVKDFVTRAIISQFKAHTSPISALC 376 (994)
Q Consensus 303 k~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~-----a-s~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLa 376 (994)
.+++.. +| |++ ..+.++.+-. . ..+.--.+.|+.+..+.+-..-..-..+|-+.+
T Consensus 392 fnVsDc---kL--hWQ--------------k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~Fa 452 (698)
T KOG2314|consen 392 FNVSDC---KL--HWQ--------------KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFA 452 (698)
T ss_pred eeeecc---EE--Eec--------------cCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeee
Confidence 000100 00 110 0001100000 0 011222466676666554333334457899999
Q ss_pred ECCCCCEEEEEEcC--CCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC---
Q 001935 377 FDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS--- 451 (994)
Q Consensus 377 FSPdGtlLATAS~d--Gt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~--- 451 (994)
+.|.|..+|+-+.. -.++++|.+... .....++.+|.. + .-+.|.|||-|+|++++..
T Consensus 453 WEP~gdkF~vi~g~~~k~tvsfY~~e~~-------------~~~~~lVk~~dk--~--~~N~vfwsPkG~fvvva~l~s~ 515 (698)
T KOG2314|consen 453 WEPHGDKFAVISGNTVKNTVSFYAVETN-------------IKKPSLVKELDK--K--FANTVFWSPKGRFVVVAALVSR 515 (698)
T ss_pred eccCCCeEEEEEccccccceeEEEeecC-------------CCchhhhhhhcc--c--ccceEEEcCCCcEEEEEEeccc
Confidence 99999999987743 345888887532 112235555543 1 2377999999999988654
Q ss_pred CCeEEEEecCC
Q 001935 452 KGTCHVFVLSP 462 (994)
Q Consensus 452 dGTVhIw~I~~ 462 (994)
.|++..++.+.
T Consensus 516 ~g~l~F~D~~~ 526 (698)
T KOG2314|consen 516 RGDLEFYDTDY 526 (698)
T ss_pred ccceEEEecch
Confidence 57788888764
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.16 E-value=0.0076 Score=67.79 Aligned_cols=219 Identities=15% Similarity=0.222 Sum_probs=131.1
Q ss_pred CCEEEEE-ECCCCeEEEEEeC--CCcEEEEEecC--CeEEEEeCC-eEEEEECC-CCceeEEEeecCCccccCCCccccc
Q 001935 172 PTAVRFY-SFQSHCYEHVLRF--RSSVCMVRCSP--RIVAVGLAT-QIYCFDAL-TLENKFSVLTYPVPQLAGQGAVGIN 244 (994)
Q Consensus 172 p~tVrLW-Dlktge~V~tL~f--~S~V~sV~~S~--~iLAVgl~~-~I~IwDa~-Tle~l~tL~t~p~p~~~~~g~~~vn 244 (994)
+++||+| ...++++...+.+ ++++.++..+. ++|+|+++. .+.=|.+. +++....++.+..- ++ .+
T Consensus 45 drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h----~~--~v- 117 (404)
T KOG1409|consen 45 DRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH----QA--RV- 117 (404)
T ss_pred cceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhh----hc--ce-
Confidence 5899999 5678888887754 57888888776 688898875 57666533 22222112222110 00 00
Q ss_pred cCccceEEcccEEEEccC-CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCC
Q 001935 245 VGYGPMAVGPRWLAYASN-TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 323 (994)
Q Consensus 245 v~~gplAlgpRwLAyas~-~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~ 323 (994)
..-.+++.+.|+-..+. .-..|..-. .. +.|.+|.-.-.+
T Consensus 118 -~~~if~~~~e~V~s~~~dk~~~~hc~e-----------------------------~~--------~~lg~Y~~~~~~- 158 (404)
T KOG1409|consen 118 -SAIVFSLTHEWVLSTGKDKQFAWHCTE-----------------------------SG--------NRLGGYNFETPA- 158 (404)
T ss_pred -eeEEecCCceeEEEeccccceEEEeec-----------------------------cC--------CcccceEeeccC-
Confidence 01123445566655543 223343100 00 111222211000
Q ss_pred CCCCCccCCCccccccccccccCCCCeEEEEEC--CCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCC
Q 001935 324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF--VTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 324 ~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl--~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (994)
++..++-. + .-.++..|.|.+-.+ .....+.++.+|..+|.+++++|.-.+|.++.. ++.+.+|||--
T Consensus 159 ---t~~~~d~~--~----~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~-d~~vi~wdigg 228 (404)
T KOG1409|consen 159 ---SALQFDAL--Y----AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS-DHSVIMWDIGG 228 (404)
T ss_pred ---CCCceeeE--E----EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccc-cCceEEEeccC
Confidence 01110000 0 013455566655444 345688999999999999999999999999998 57799999931
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 402 ~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
.. -..|++.+ ++..|+.+.--+--+.|.+++.||-|-+|+++-..
T Consensus 229 -----~~-----------g~~~el~g--h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 229 -----RK-----------GTAYELQG--HNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred -----Cc-----------ceeeeecc--chhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 01 24567754 34568888888888999999999999999987643
No 262
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.15 E-value=0.0071 Score=67.48 Aligned_cols=127 Identities=18% Similarity=0.209 Sum_probs=90.5
Q ss_pred cccCCCCeEEEEECCCCc---EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcc
Q 001935 343 ADMDNAGIVVVKDFVTRA---IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~---~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~ 419 (994)
+.+-+...|.||...... ..++|.-|...|+.+.++|.+..|+|++. +++-.||...+ | ..|.++
T Consensus 26 Av~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~-drnayVw~~~~-------~---~~Wkpt- 93 (361)
T KOG1523|consen 26 AVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH-DRNAYVWTQPS-------G---GTWKPT- 93 (361)
T ss_pred EeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccC-CCCccccccCC-------C---Ceeccc-
Confidence 344567789999887654 67899999999999999999999999999 55689999732 2 134433
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcccccccCCCCCCccCCccCCCcc
Q 001935 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWW 490 (994)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~s~~~~~~~~p~~~lpw~ 490 (994)
..|.|- +....+|.|||.+..+|+||.-..|-||-.+. +...- =+.+...|..+-+++|.|-
T Consensus 94 ---lvLlRi--NrAAt~V~WsP~enkFAVgSgar~isVcy~E~---ENdWW-VsKhikkPirStv~sldWh 155 (361)
T KOG1523|consen 94 ---LVLLRI--NRAATCVKWSPKENKFAVGSGARLISVCYYEQ---ENDWW-VSKHIKKPIRSTVTSLDWH 155 (361)
T ss_pred ---eeEEEe--ccceeeEeecCcCceEEeccCccEEEEEEEec---cccee-hhhhhCCccccceeeeecc
Confidence 333342 23468999999999999999999999998654 33220 0112344556666777763
No 263
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.13 Score=61.08 Aligned_cols=98 Identities=13% Similarity=0.240 Sum_probs=71.4
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE-cCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 001935 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS-VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (994)
Q Consensus 350 ~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS-~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG 428 (994)
++.+.+++...++..+. -.+||-+++|+|+|+-++..= --=..+-|||+. | ..++.|-.|
T Consensus 252 ~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--------~----------~~v~df~eg 312 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--------G----------KPVFDFPEG 312 (566)
T ss_pred eEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--------C----------CEeEeCCCC
Confidence 57777777444444443 358999999999999776542 222358889985 3 477888666
Q ss_pred cccccEEEEEEccCCCEEEEEeCC---CeEEEEecCCCCCCcccc
Q 001935 429 ITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSPFGGDSGFQ 470 (994)
Q Consensus 429 ~t~a~I~sIaFSpDg~~LAsgS~d---GTVhIw~I~~~gg~~~~~ 470 (994)
.. .++-|+|-|++|+.++.. |.+-|||+..++....+.
T Consensus 313 pR----N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~ 353 (566)
T KOG2315|consen 313 PR----NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK 353 (566)
T ss_pred Cc----cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc
Confidence 54 458899999999998865 789999999887765543
No 264
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.10 E-value=0.0028 Score=70.70 Aligned_cols=88 Identities=17% Similarity=0.291 Sum_probs=69.7
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
-.+++|.+|++...+-...|..-..+++++++||||+.|.+.|+-+-.|.||.+.+. ..+-+
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~------------------~~~~~ 129 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ------------------KGYLL 129 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc------------------eeEEe
Confidence 468899999999999889999999999999999999777766665677999998541 22222
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCC
Q 001935 426 HRGITSATIQDICFSHYSQWIAIVSSKG 453 (994)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~LAsgS~dG 453 (994)
.. ..+.+..++|.|||++.|..+.+.
T Consensus 130 ~~--pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 130 PH--PKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred cc--cccCceeEEECCCCceeeeeeccc
Confidence 21 123468899999999999999874
No 265
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.10 E-value=0.0016 Score=84.38 Aligned_cols=88 Identities=20% Similarity=0.339 Sum_probs=66.9
Q ss_pred CCCeEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 001935 347 NAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (994)
Q Consensus 347 ~dG~V~VwDl~s~---~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~ 423 (994)
.++.|.+||..-. ..+. .+|.+.+++|+|-|.-++|.|++.+|. |+|||+... ++++
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~-v~l~D~rqr-----------------ql~h 2372 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGE-VCLFDIRQR-----------------QLRH 2372 (2439)
T ss_pred CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCc-EEEeehHHH-----------------HHHH
Confidence 4677889997532 2444 899999999999999999999999998 899999531 1222
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCC
Q 001935 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (994)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~ 466 (994)
.+. + +. .-.++.+++.+|+++||.++.++-.
T Consensus 2373 ~~~-----~------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2373 TFQ-----A------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred Hhh-----h------hh-hhheeeccCcccceEEEEccccchh
Confidence 221 1 22 4568999999999999999987543
No 266
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.13 Score=63.24 Aligned_cols=124 Identities=12% Similarity=0.113 Sum_probs=85.2
Q ss_pred CCCCCCcEEEEEEeeccCCC---C-C-CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCC
Q 001935 52 SEDLKDQVTWAGFDRLEYGP---S-V-FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEG 125 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~---~-~-~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~ 125 (994)
.|.|+..|.-+++-....+. + + ...+|+++.-+| |.|||. ..+.++-.++.+..+|-.+.+.|.-
T Consensus 51 ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~-~~~s~~~~l~~~~~~~qdl~W~~~r-------- 121 (1062)
T KOG1912|consen 51 IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF-VLASVINWLSHSNDSVQDLCWVPAR-------- 121 (1062)
T ss_pred cccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe-hhhhhhhhhcCCCcchhheeeeecc--------
Confidence 56677777766665443321 1 1 234566666667 999999 4566777788888999999998753
Q ss_pred ccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEE-EEEecC--
Q 001935 126 FRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVC-MVRCSP-- 202 (994)
Q Consensus 126 F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~-sV~~S~-- 202 (994)
..+|.+|++.. .+.+|.+|+..+|+.+..+.+...|+ +++++|
T Consensus 122 -d~Srd~LlaIh---------------------------------~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd 167 (1062)
T KOG1912|consen 122 -DDSRDVLLAIH---------------------------------GSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFD 167 (1062)
T ss_pred -CcchheeEEec---------------------------------CCcEEEEEEccCCceeeccccCCcceeeeeeCCCC
Confidence 23455666432 24789999999999998888877665 488877
Q ss_pred --CeEEEEeCCeEEEEEC
Q 001935 203 --RIVAVGLATQIYCFDA 218 (994)
Q Consensus 203 --~iLAVgl~~~I~IwDa 218 (994)
.+.+.++.+.+.+-+.
T Consensus 168 ~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 168 SRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred cceEEEEccCceEEEEec
Confidence 3555566766666543
No 267
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.91 E-value=0.087 Score=62.08 Aligned_cols=284 Identities=17% Similarity=0.198 Sum_probs=151.8
Q ss_pred CCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCC
Q 001935 72 SVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (994)
Q Consensus 72 ~~~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~ 151 (994)
++.++.|++....|+++|+-+..+ .++.....-|+.+.|+|+. .+|..+....- +.
T Consensus 41 SP~G~~l~~~~~~~V~~~~g~~~~---~l~~~~~~~V~~~~fSP~~-------------kYL~tw~~~pi------~~-- 96 (561)
T COG5354 41 SPLGTYLFSEHAAGVECWGGPSKA---KLVRFRHPDVKYLDFSPNE-------------KYLVTWSREPI------IE-- 96 (561)
T ss_pred cCcchheehhhccceEEccccchh---heeeeecCCceecccCccc-------------ceeeeeccCCc------cC--
Confidence 456889999999999999975433 4455556679998888765 46665543211 10
Q ss_pred CccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-c-----EEEEEecCCeEEEEeCCeEEEEECCCCceeE
Q 001935 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-S-----VCMVRCSPRIVAVGLATQIYCFDALTLENKF 225 (994)
Q Consensus 152 ~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S-~-----V~sV~~S~~iLAVgl~~~I~IwDa~Tle~l~ 225 (994)
-..+.. ...+.+.+.+||..+|..+..+...+ + +....++..++|=...+.++|+++ |...
T Consensus 97 -------pe~e~s---p~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~-- 163 (561)
T COG5354 97 -------PEIEIS---PFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNI-- 163 (561)
T ss_pred -------hhhccC---CccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCcc--
Confidence 000000 01123579999999999999887643 2 556666666666445667999997 3211
Q ss_pred EEeecCCccccCCCccccccCccceEEcc----cEEEEc-cC------CeeeccCCccCCCcCCCCCCCCCcCCCCCceE
Q 001935 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGP----RWLAYA-SN------TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLV 294 (994)
Q Consensus 226 tL~t~p~p~~~~~g~~~vnv~~gplAlgp----RwLAya-s~------~~~iwd~G~~s~qsltp~~~S~stSp~~gsLV 294 (994)
..+|-..+-.+ +..-++++| .-|||= +. .+++|..+ .+..++
T Consensus 164 --~~~p~~~lr~~-------gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp------------------~~s~l~ 216 (561)
T COG5354 164 --EEHPFKNLRPV-------GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIP------------------KNSVLV 216 (561)
T ss_pred --ccCchhhcccc-------ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEcc------------------CCCeee
Confidence 01111000001 123345554 123432 11 12233211 112222
Q ss_pred EEeehhhhhhhhcccc---eeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCC
Q 001935 295 ARYAMEHSKQFAAGLS---KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSP 371 (994)
Q Consensus 295 a~~A~dssk~la~Gi~---ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtsp 371 (994)
.+--.+ ++++. +.+.+|.--+. . ...+.+. +-=....+.|+++....+.... .-.+|
T Consensus 217 tk~lfk-----~~~~qLkW~~~g~~ll~l~-~---------t~~ksnK----syfgesnLyl~~~~e~~i~V~~-~~~~p 276 (561)
T COG5354 217 TKNLFK-----VSGVQLKWQVLGKYLLVLV-M---------THTKSNK----SYFGESNLYLLRITERSIPVEK-DLKDP 276 (561)
T ss_pred eeeeEe-----ecccEEEEecCCceEEEEE-E---------Eeeeccc----ceeccceEEEEeecccccceec-ccccc
Confidence 110000 01110 11111110000 0 0000000 0001346888888855433332 56789
Q ss_pred eEEEEECCCCCEEEEEE-cCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 001935 372 ISALCFDPSGTLLVTAS-VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (994)
Q Consensus 372 IsaLaFSPdGtlLATAS-~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS 450 (994)
|-..+|+|.++.+|+.+ .....+.+|++.. ...+.+-.+.. .-+.|||.++|+..++
T Consensus 277 Vhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~------------------Nl~~~~Pe~~r----NT~~fsp~~r~il~ag 334 (561)
T COG5354 277 VHDFTWEPLSSRFAVISGYMPASVSVFDLRG------------------NLRFYFPEQKR----NTIFFSPHERYILFAG 334 (561)
T ss_pred ceeeeecccCCceeEEecccccceeeccccc------------------ceEEecCCccc----ccccccCcccEEEEec
Confidence 99999999999999888 5556789999852 13333322222 3478999999999987
Q ss_pred CCC---eEEEEecC
Q 001935 451 SKG---TCHVFVLS 461 (994)
Q Consensus 451 ~dG---TVhIw~I~ 461 (994)
.+. .+-||+..
T Consensus 335 F~nl~gni~i~~~~ 348 (561)
T COG5354 335 FDNLQGNIEIFDPA 348 (561)
T ss_pred CCccccceEEeccC
Confidence 774 57888743
No 268
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.88 E-value=0.0026 Score=44.83 Aligned_cols=38 Identities=32% Similarity=0.708 Sum_probs=33.3
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEe
Q 001935 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 398 (994)
Q Consensus 360 ~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwd 398 (994)
+.+..+.+|..+|.+|+|++++.++++++.+|+ +++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence 456778899999999999999999999999765 89986
No 269
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.87 E-value=0.0027 Score=72.36 Aligned_cols=100 Identities=12% Similarity=0.094 Sum_probs=73.8
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
+....+.+|....+ ....+.+|-+-|..++|+||++++.||+.|++ |||=+. |.+ .-+..|
T Consensus 129 gD~~~~di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~y-pa~----------------f~Iesf 189 (390)
T KOG3914|consen 129 GDVYSFDILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRY-PAT----------------FVIESF 189 (390)
T ss_pred CCceeeeeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEec-Ccc----------------cchhhh
Confidence 34555666666653 33456799999999999999999999999776 898776 210 123334
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCC
Q 001935 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (994)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~ 466 (994)
--||+ .-|..|+.- |++.|+++|.|+|+++|++...+..
T Consensus 190 clGH~-eFVS~isl~-~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 190 CLGHK-EFVSTISLT-DNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ccccH-hheeeeeec-cCceeeecCCCCcEEEEecccCCcc
Confidence 44654 457778877 5577999999999999999887654
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.47 Score=54.15 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=26.9
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEeCCCC
Q 001935 373 SALCFDPSGTLLVTASVYGNNINIFRIMPS 402 (994)
Q Consensus 373 saLaFSPdGtlLATAS~dGt~IrVwdi~p~ 402 (994)
....|+|+|++|+.|.+++.+|.||.+.+.
T Consensus 294 R~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 294 RDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred ccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 467899999999999999999999999763
No 271
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.82 E-value=0.08 Score=62.27 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=56.8
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
+..|.++|+.+++. ..+..+........|+|||+.|+-.|..+..-+||.+... +|. .+.+. + .
T Consensus 256 ~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~-----~g~--------~~rlt-~-~ 319 (419)
T PRK04043 256 QPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN-----SGS--------VEQVV-F-H 319 (419)
T ss_pred CcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC-----CCC--------eEeCc-c-C
Confidence 45677888877653 3444333323345799999988877754443455554221 121 11111 1 1
Q ss_pred ccccccEEEEEEccCCCEEEEEeCC-------CeEEEEecCCCCCC
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSK-------GTCHVFVLSPFGGD 466 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~d-------GTVhIw~I~~~gg~ 466 (994)
|. ...+|||||++|+..+.. ++.+||-++..++.
T Consensus 320 g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 320 GK-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred CC-----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 32 124899999999998876 33567766665554
No 272
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.72 E-value=0.018 Score=66.19 Aligned_cols=97 Identities=8% Similarity=0.004 Sum_probs=74.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc---------CCCeEEEEeCCCCcccCCCCCCccccCCcc
Q 001935 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~---------dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~ 419 (994)
+.|.|.|..+++++.++..-..|-- + +||||+.|..|.. +...|.|||+.. +
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-------~---------- 87 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-------H---------- 87 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-------C----------
Confidence 8999999999999999987666654 4 9999999999988 777899999864 2
Q ss_pred eEEEEEecccc-----cccEEEEEEccCCCEEEEEeC--CCeEEEEecCCCC
Q 001935 420 VHLYKLHRGIT-----SATIQDICFSHYSQWIAIVSS--KGTCHVFVLSPFG 464 (994)
Q Consensus 420 ~~l~~L~RG~t-----~a~I~sIaFSpDg~~LAsgS~--dGTVhIw~I~~~g 464 (994)
..+.++.-|.. ...-..++|||||++|.+... +..|.|.++...+
T Consensus 88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k 139 (352)
T TIGR02658 88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA 139 (352)
T ss_pred cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc
Confidence 34444432211 122457999999999998873 5789999987653
No 273
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.66 E-value=0.025 Score=69.02 Aligned_cols=101 Identities=24% Similarity=0.290 Sum_probs=76.5
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC------CCe---EEEEeCCCCcccCCCCCCcc
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY------GNN---INIFRIMPSCMRSGSGNHKY 413 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~d------Gt~---IrVwdi~p~~~~~~sG~~~~ 413 (994)
+-|.+.|+|.|+|+.++.+.+.|..|++.|-.|.|--.- .|+|.+.. |.+ +-|=|+.. |
T Consensus 441 AvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s-slvSfsys~~n~~sg~vrN~l~vtdLrt-------G---- 508 (1062)
T KOG1912|consen 441 AVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS-SLVSFSYSHVNSASGGVRNDLVVTDLRT-------G---- 508 (1062)
T ss_pred EeecCCceEEEEEecchhhhhhhcccccceeeeeeccce-eEEEeeeccccccccceeeeEEEEEccc-------c----
Confidence 467789999999999999999999999999999997664 45565531 111 22334432 3
Q ss_pred ccCCcceEEEEEe--cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 414 DWNSSHVHLYKLH--RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 414 ~~~~s~~~l~~L~--RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
.-..|| ++.....|..|.-|.-++|||+.=.|.-+.||++..
T Consensus 509 -------lsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 509 -------LSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred -------cccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 112233 566777899999999999999999999999999854
No 274
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.47 E-value=0.018 Score=68.75 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=67.9
Q ss_pred EEEEECCCCc--EEEEe-ccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 351 VVVKDFVTRA--IISQF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 351 V~VwDl~s~~--~i~~~-~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
-.+|+...++ .++.. -.+.++|.+++++|+.+.|+.|..||. |++||... + +-.+-+
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS-iiLyD~~~-------~------------~t~~~k 297 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS-IILYDTTR-------G------------VTLLAK 297 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe-EEEEEcCC-------C------------eeeeee
Confidence 3466766543 22222 257889999999999999999999887 89999853 1 111111
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
. ......++|+|||..+++|+.+|.+.+||+...
T Consensus 298 a--~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 298 A--EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred e--cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 1 235788999999999999999999999998653
No 275
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.45 E-value=1.5 Score=46.03 Aligned_cols=94 Identities=17% Similarity=0.142 Sum_probs=61.6
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCe-----------EEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCcc
Q 001935 345 MDNAGIVVVKDFVTRAIISQFKAHTSPI-----------SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~aHtspI-----------saLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~ 413 (994)
+..+|.|..+|+.+|+.+.....+..+. ..+.++ +| .+..++.+|..+.+ |+.. |
T Consensus 128 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~t-------g---- 193 (238)
T PF13360_consen 128 GTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLAT-------G---- 193 (238)
T ss_dssp EETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTT-------T----
T ss_pred EeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCC-------C----
Confidence 3458999999999999998887755331 344444 55 55555555776777 8753 3
Q ss_pred ccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 414 DWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 414 ~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
..+.+.. .. .+.. .+..++..|.+++.+++++.|++...
T Consensus 194 ------~~~w~~~--~~--~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 194 ------EKLWSKP--IS--GIYS-LPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp ------EEEEEEC--SS---ECE-CEECCCTEEEEEETTTEEEEEETTTT
T ss_pred ------CEEEEec--CC--CccC-CceeeCCEEEEEeCCCEEEEEECCCC
Confidence 3333221 11 1222 25678899999999999999998764
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.28 E-value=1.5 Score=51.79 Aligned_cols=114 Identities=13% Similarity=0.169 Sum_probs=78.3
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc--EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG--FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 54 ~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G--~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
+++.+|.+.+|.. +..-++.|..+| +-|+|.+ ++++ +.+...-|.|..|++.|++.
T Consensus 357 ~~~~~VrY~r~~~-------~~e~~vigt~dgD~l~iyd~~-~~e~-kr~e~~lg~I~av~vs~dGK------------- 414 (668)
T COG4946 357 GKKGGVRYRRIQV-------DPEGDVIGTNDGDKLGIYDKD-GGEV-KRIEKDLGNIEAVKVSPDGK------------- 414 (668)
T ss_pred CCCCceEEEEEcc-------CCcceEEeccCCceEEEEecC-CceE-EEeeCCccceEEEEEcCCCc-------------
Confidence 5778899888864 334677787777 8999984 4544 45555668899999998872
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CcEEEEEecC--CeEEE
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP--RIVAV 207 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~--S~V~sV~~S~--~iLAV 207 (994)
.++ |+.+ -..+-++|+.+|.. +.+.-. .-|..+.+++ +++|-
T Consensus 415 ~~v-vaNd--------------------------------r~el~vididngnv-~~idkS~~~lItdf~~~~nsr~iAY 460 (668)
T COG4946 415 KVV-VAND--------------------------------RFELWVIDIDNGNV-RLIDKSEYGLITDFDWHPNSRWIAY 460 (668)
T ss_pred EEE-EEcC--------------------------------ceEEEEEEecCCCe-eEecccccceeEEEEEcCCceeEEE
Confidence 233 3321 13566778888875 333222 4688888877 78998
Q ss_pred EeCC-----eEEEEECCCCce
Q 001935 208 GLAT-----QIYCFDALTLEN 223 (994)
Q Consensus 208 gl~~-----~I~IwDa~Tle~ 223 (994)
+..+ .|++||+.+.+.
T Consensus 461 afP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 461 AFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred ecCcceeeeeEEEEecCCCeE
Confidence 7754 499999988764
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.21 E-value=3.2 Score=47.41 Aligned_cols=57 Identities=14% Similarity=-0.019 Sum_probs=40.4
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEE-Ee-cCCeEEEEeCCeEEEEECCCCceeEEEee
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVCMV-RC-SPRIVAVGLATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~sV-~~-S~~iLAVgl~~~I~IwDa~Tle~l~tL~t 229 (994)
+.|.-+|.++|+.+....+...+.+. .. ...+++...++.|++||+.+++.+.....
T Consensus 115 g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred CEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 67899999999998887776554321 12 23344445567899999999998877654
No 278
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.16 E-value=0.14 Score=63.93 Aligned_cols=182 Identities=15% Similarity=0.155 Sum_probs=123.7
Q ss_pred CEEEEEECCCCeEEEEEeCCC-cEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccce
Q 001935 173 TAVRFYSFQSHCYEHVLRFRS-SVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM 250 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S-~V~sV~~S~~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gpl 250 (994)
..+.-+|+++.+..+.....+ .|.=++-|.+.|.+|. .++|.+-|..+.+.++++.+|..- ..-+
T Consensus 157 ~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s-------------iSDf 223 (1118)
T KOG1275|consen 157 EKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS-------------ISDF 223 (1118)
T ss_pred hheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccc-------------eeee
Confidence 567888999999988887764 6888888888777766 457999999999999999988651 1234
Q ss_pred EEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCcc
Q 001935 251 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS 330 (994)
Q Consensus 251 AlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s 330 (994)
.+..+.|+..|... | .|
T Consensus 224 Dv~GNlLitCG~S~------R-------------------------------------------~~-------------- 240 (1118)
T KOG1275|consen 224 DVQGNLLITCGYSM------R-------------------------------------------RY-------------- 240 (1118)
T ss_pred eccCCeEEEeeccc------c-------------------------------------------cc--------------
Confidence 44434444433210 0 00
Q ss_pred CCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCCCCcccCCCC
Q 001935 331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSG 409 (994)
Q Consensus 331 ~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~sG 409 (994)
+ -.-|--|+|||+..-+.+.-+.-|-.| ..+.|.|.= +.||.+|..|. +.+-|...- +
T Consensus 241 -------~------l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq-~q~vd~~~l------s 299 (1118)
T KOG1275|consen 241 -------N------LAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ-FQFVDTATL------S 299 (1118)
T ss_pred -------c------ccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc-eeecccccc------C
Confidence 0 023567899999998887777777777 668888875 36777777687 566563210 1
Q ss_pred CCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 001935 410 NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 410 ~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I 460 (994)
+... .++.+ ..-...|..+.||+.++.||.+-.+|-||+|.=
T Consensus 300 ----NP~~---~~~~v--~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 300 ----NPPA---GVKMV--NPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ----CCcc---ceeEE--ccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 1111 11111 111224889999999999999999999999993
No 279
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.10 E-value=0.33 Score=54.48 Aligned_cols=97 Identities=12% Similarity=0.126 Sum_probs=60.6
Q ss_pred CeEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 349 GIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 349 G~V~VwDl~s~~-~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
+.|.||++...+ .+. ..-+..++..++...-+.+++.++.... +.++..... + ..+..+.|
T Consensus 107 ~~l~v~~l~~~~~l~~-~~~~~~~~~i~sl~~~~~~I~vgD~~~s-v~~~~~~~~------~----------~~l~~va~ 168 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLK-KAFYDSPFYITSLSVFKNYILVGDAMKS-VSLLRYDEE------N----------NKLILVAR 168 (321)
T ss_dssp TEEEEEEEETTSSEEE-EEEE-BSSSEEEEEEETTEEEEEESSSS-EEEEEEETT------T----------E-EEEEEE
T ss_pred CEEEEEEccCcccchh-hheecceEEEEEEeccccEEEEEEcccC-EEEEEEEcc------C----------CEEEEEEe
Confidence 567777777666 322 2222233334444444668988987554 677654321 1 34556656
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
-.....+.++.|-+|++.++++..+|.+++|..++.
T Consensus 169 d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 169 DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 555557999999977789999999999999998753
No 280
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.03 E-value=0.077 Score=59.30 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=55.1
Q ss_pred eccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE------e----cccccccE
Q 001935 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL------H----RGITSATI 434 (994)
Q Consensus 365 ~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L------~----RG~t~a~I 434 (994)
|..-.+.|+.+.|+++|+++++-+- -+++|||+.-. . .++.+. + --..+..|
T Consensus 276 f~eivsSISD~kFs~ngryIlsRdy--ltvkiwDvnm~------k----------~pikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 276 FEEIVSSISDFKFSDNGRYILSRDY--LTVKIWDVNMA------K----------NPIKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred HHHHhhhhcceEEcCCCcEEEEecc--ceEEEEecccc------c----------CCceeechHHHHHHHHHhhhhccce
Confidence 3445678999999999999987775 46999998531 0 112111 0 00011123
Q ss_pred ---EEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 435 ---QDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 435 ---~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
..+.||-|++.+.+||-....-||....
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeecccc
Confidence 3589999999999999999988888544
No 281
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.00 E-value=0.068 Score=62.42 Aligned_cols=98 Identities=20% Similarity=0.239 Sum_probs=72.7
Q ss_pred ccCCCC-eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 344 DMDNAG-IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 344 s~s~dG-~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
-+..|| .+-|+|..+++ +..+...-+.|.+|..+|||++++.|-.+.. |-|.|+.. |. .+.+
T Consensus 376 igt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~e-l~vididn-------gn--------v~~i 438 (668)
T COG4946 376 IGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFE-LWVIDIDN-------GN--------VRLI 438 (668)
T ss_pred EeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceE-EEEEEecC-------CC--------eeEe
Confidence 356787 79999999876 4567777789999999999999987765443 56667643 31 1233
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCC----eEEEEecCC
Q 001935 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKG----TCHVFVLSP 462 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dG----TVhIw~I~~ 462 (994)
-+-+ .+-|.+++|+|+++|||-+=-+| .||||++..
T Consensus 439 dkS~----~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 439 DKSE----YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred cccc----cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 2222 34699999999999999987776 589999864
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.95 E-value=2.7 Score=47.03 Aligned_cols=95 Identities=16% Similarity=0.267 Sum_probs=58.7
Q ss_pred CCCCeEEEEECCCCCEEEEEEcC-CC---------eEEEEeCCCC---cccCCCCCCccccC--CcceEEEE-------E
Q 001935 368 HTSPISALCFDPSGTLLVTASVY-GN---------NINIFRIMPS---CMRSGSGNHKYDWN--SSHVHLYK-------L 425 (994)
Q Consensus 368 HtspIsaLaFSPdGtlLATAS~d-Gt---------~IrVwdi~p~---~~~~~sG~~~~~~~--~s~~~l~~-------L 425 (994)
+...|.++.|+|.-++|..|+.. .. -+-.|++... +...... ..+.. .....+.+ .
T Consensus 146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~--~~~~~~~~~~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSS--EDDITASSKRRGLLRIPSFKFFS 223 (282)
T ss_pred CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcccc--Cccccccccccceeeccceeeee
Confidence 46789999999998888776642 11 2567877532 1100000 00000 00001111 1
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
+.+.....|..|+.||||+.||+.+.+|.+-||+|....
T Consensus 224 ~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 224 RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 224344579999999999999999999999999997654
No 283
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.02 Score=65.61 Aligned_cols=96 Identities=25% Similarity=0.253 Sum_probs=75.2
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 001935 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (994)
Q Consensus 351 V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~ 429 (994)
|++.+-.+-+.+..+..|..-|..|+|||... ||..||. |.+|+|+|+...+ ....|...
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl-~nkiki~dlet~~---------------~vssy~a~--- 235 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASL-GNKIKIMDLETSC---------------VVSSYIAY--- 235 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeecc-CceEEEEecccce---------------eeeheecc---
Confidence 77777777666667888999999999999998 7888888 8889999996531 12334432
Q ss_pred ccccEEEEEEccCC-CEEEEEeCCCeEEEEecCCCCCCc
Q 001935 430 TSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDS 467 (994)
Q Consensus 430 t~a~I~sIaFSpDg-~~LAsgS~dGTVhIw~I~~~gg~~ 467 (994)
..||+++|.-|. .+|.+|-.+|.|.||++....++.
T Consensus 236 --~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 236 --NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred --CCceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence 469999999876 577778889999999998876653
No 284
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=95.84 E-value=0.028 Score=65.68 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=50.9
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeC
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (994)
.+|+..|.|-|||-.+++.|..+.|-..-|+||.=.|-=-+|||.+. ++.|+||.-
T Consensus 410 vSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGi-d~DVKIWTP 465 (559)
T KOG1334|consen 410 VSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGI-DHDVKIWTP 465 (559)
T ss_pred EecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCC-ccceeeecC
Confidence 47888999999999999999999997779999999999999999999 677999985
No 285
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.77 E-value=4.9 Score=45.88 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=56.6
Q ss_pred cCCCCeEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 001935 345 MDNAGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~aH-tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~ 423 (994)
+..+|.|..+|..+++.+.....- ....+.... .|.+|++++.+|. +.+|+... | +.+.
T Consensus 285 ~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~-l~~~d~~t-------G----------~~~~ 344 (377)
T TIGR03300 285 TDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY-LHWLSRED-------G----------SFVA 344 (377)
T ss_pred ECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE-EEEEECCC-------C----------CEEE
Confidence 357899999999999887666321 112222222 3668888888776 88999753 4 3555
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 001935 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
++.-+.. ....+.++. |+ .|.+++.||+++.|.
T Consensus 345 ~~~~~~~-~~~~sp~~~-~~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 345 RLKTDGS-GIASPPVVV-GD-GLLVQTRDGDLYAFR 377 (377)
T ss_pred EEEcCCC-ccccCCEEE-CC-EEEEEeCCceEEEeC
Confidence 5542211 111222333 43 588999999998873
No 286
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.57 E-value=3.3 Score=47.05 Aligned_cols=93 Identities=23% Similarity=0.230 Sum_probs=60.9
Q ss_pred CeEEEEECCCCcEEEE--ec--cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 001935 349 GIVVVKDFVTRAIISQ--FK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~--~~--aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~ 424 (994)
-.+...|..+++++.+ +. -|...|.-|+++++|+.++-.=.+|-. ++..| .+..
T Consensus 138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~---~~~~P-------------------Lva~ 195 (305)
T PF07433_consen 138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP---GDAPP-------------------LVAL 195 (305)
T ss_pred CceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCC---CccCC-------------------eEEE
Confidence 3466678888888877 52 388899999999999877654443321 11111 1111
Q ss_pred Eeccc--------------ccccEEEEEEccCCCEEEEEeCCC-eEEEEecCCC
Q 001935 425 LHRGI--------------TSATIQDICFSHYSQWIAIVSSKG-TCHVFVLSPF 463 (994)
Q Consensus 425 L~RG~--------------t~a~I~sIaFSpDg~~LAsgS~dG-TVhIw~I~~~ 463 (994)
+++|. -..-|-+|+|+.|+.++|++|=+| .+.+|+..+.
T Consensus 196 ~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 196 HRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred EcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 11111 012488999999999998888775 6999987664
No 287
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.39 E-value=0.28 Score=61.31 Aligned_cols=52 Identities=10% Similarity=-0.005 Sum_probs=41.7
Q ss_pred CEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEeC-C---------eEEEEECCCCcee
Q 001935 173 TAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLA-T---------QIYCFDALTLENK 224 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~-S~V~sV~~S~~iLAVgl~-~---------~I~IwDa~Tle~l 224 (994)
++|.+-|.++.+.+|++..+ +.|.++....++|+.+.- . -|.+||++.++.+
T Consensus 197 G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral 259 (1118)
T KOG1275|consen 197 GTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL 259 (1118)
T ss_pred ceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence 68999999999999999865 588999999988776542 2 2788998877643
No 288
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=95.27 E-value=4 Score=45.71 Aligned_cols=32 Identities=22% Similarity=0.504 Sum_probs=28.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeC
Q 001935 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (994)
Q Consensus 367 aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (994)
.-..-|..|+.||||++||+....|. |-+|++
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~-lsLW~i 258 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGS-LSLWEI 258 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCe-EEEEec
Confidence 34678999999999999999999887 999999
No 289
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.25 E-value=0.063 Score=37.49 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=26.7
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 001935 431 SATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 431 ~a~I~sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
...|.+++|.++++++++++.|+++.+|+
T Consensus 12 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 12 TGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45799999999999999999999999995
No 290
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=95.20 E-value=1.3 Score=52.67 Aligned_cols=78 Identities=19% Similarity=0.342 Sum_probs=54.2
Q ss_pred CCCeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEc--C---CCeEEEEeCCCCcccCCCCCCccccCCcce
Q 001935 347 NAGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASV--Y---GNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~-~~~aHtspIsaLaFSPdGtlLATAS~--d---Gt~IrVwdi~p~~~~~~sG~~~~~~~~s~~ 420 (994)
.-|.|.|||...+-.++ .|.+-. .+.+.|+|||.++-++-. + +..|+||++. | .
T Consensus 338 l~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~--------g----------~ 397 (561)
T COG5354 338 LQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY--------G----------A 397 (561)
T ss_pred cccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEec--------C----------c
Confidence 34678888888765444 676643 356789999998877643 2 5569999984 3 1
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 001935 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453 (994)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dG 453 (994)
..++ .+.+.|.|-+++..++|...
T Consensus 398 ~~fe---------l~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 398 KVFE---------LTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred hhhh---------hhhccccCCcccceeeccCC
Confidence 2222 34578899999998888776
No 291
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.74 E-value=9.2 Score=42.99 Aligned_cols=50 Identities=10% Similarity=0.195 Sum_probs=41.1
Q ss_pred CEEEEEECCCC-------eEEEEEeCCCcEEEEEecCCeEEEEeCCeEEEEECCCCc
Q 001935 173 TAVRFYSFQSH-------CYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLE 222 (994)
Q Consensus 173 ~tVrLWDlktg-------e~V~tL~f~S~V~sV~~S~~iLAVgl~~~I~IwDa~Tle 222 (994)
+.|.++++... +.++..+++++|++|..-...|+++..++|++|++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcc
Confidence 78999999884 345566788999999887877999999999999988766
No 292
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=94.69 E-value=0.18 Score=56.25 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=74.1
Q ss_pred ccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCC-CCcccCCCCCCccccCCcc
Q 001935 344 DMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIM-PSCMRSGSGNHKYDWNSSH 419 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~--~i~~~~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~-p~~~~~~sG~~~~~~~~s~ 419 (994)
....+|.+.+.+..... .++.+++|.-++....|+..- .++.|++.||. +.-||+. | +
T Consensus 138 vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p-------~---------- 199 (339)
T KOG0280|consen 138 VSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIP-------K---------- 199 (339)
T ss_pred EEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCC-------c----------
Confidence 44566777655555443 345899999999999998544 58888988776 9999996 2 1
Q ss_pred eEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCeEEEEecCCCCCC
Q 001935 420 VHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGD 466 (994)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSp-Dg~~LAsgS~dGTVhIw~I~~~gg~ 466 (994)
..++.-.+- |...|.+|.=|| +..+|++|+-|.++|+|+....+.+
T Consensus 200 ~~i~~n~kv-H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 200 TFIWHNSKV-HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred ceeeeccee-eecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 133321122 235578887774 6889999999999999998766543
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=94.64 E-value=0.39 Score=53.17 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=64.5
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
.++.+.+.+....+...++.. -.+..+++|+|++++++.+. -..|-.|.|... + ..++. .+
T Consensus 138 ht~k~~~~~~~s~~~~~h~~~--~~~ns~~~snd~~~~~~Vgd-s~~Vf~y~id~~------s---------ey~~~-~~ 198 (344)
T KOG4532|consen 138 HTGKTMVVSGDSNKFAVHNQN--LTQNSLHYSNDPSWGSSVGD-SRRVFRYAIDDE------S---------EYIEN-IY 198 (344)
T ss_pred cceeEEEEecCcccceeeccc--cceeeeEEcCCCceEEEecC-CCcceEEEeCCc------c---------ceeee-eE
Confidence 344444444444443333332 22889999999999998876 343666777432 1 01222 22
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
-..+...=.+.+||..+..+|+++.||++-||++...+-
T Consensus 199 ~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 199 EAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred ecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 223333446799999999999999999999999987543
No 294
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.28 E-value=0.23 Score=60.79 Aligned_cols=106 Identities=13% Similarity=0.242 Sum_probs=69.3
Q ss_pred CCCeEEEEEecCcEEEEEccCCCcceEeeeeccC-CEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCC
Q 001935 73 VFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDG-PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (994)
Q Consensus 73 ~~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdG-pV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~ 151 (994)
+.++-++++...|+-|-|+++...--..|..-+. .|..+++.|-| .+|+.+| +.
T Consensus 34 p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~-----------a~~~wiV-st------------- 88 (1081)
T KOG0309|consen 34 PSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHP-----------AKPYWIV-ST------------- 88 (1081)
T ss_pred cccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCC-----------CCceeEE-ec-------------
Confidence 4566778888889999999776654444443333 37788888755 4578776 32
Q ss_pred CccccccCCcCCCCCCCCCCCCEEEEEECCC--CeEEEEE--eCCCcEEEEEecC---CeEEEEeCC-eEEEEECCCCc
Q 001935 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS--HCYEHVL--RFRSSVCMVRCSP---RIVAVGLAT-QIYCFDALTLE 222 (994)
Q Consensus 152 ~~~~vr~g~~d~~~~~~~~sp~tVrLWDlkt--ge~V~tL--~f~S~V~sV~~S~---~iLAVgl~~-~I~IwDa~Tle 222 (994)
++.+-.+|++.. .+.|.-+ .+...|.++-|++ .+|+.+..+ .+++||++...
T Consensus 89 -------------------s~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 89 -------------------SNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred -------------------CcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 123566788753 2333322 2345889999987 578876654 69999987654
No 295
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=0.045 Score=64.46 Aligned_cols=88 Identities=23% Similarity=0.361 Sum_probs=64.6
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 001935 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (994)
Q Consensus 361 ~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFS 440 (994)
.+..|.+|+..|.+++-=.+.+-+++||. ++++++|.+++..+. .| +..+.+++.. |...|.+|.|=
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASk-DKTVKLWSik~EgD~--~~--------tsaCQfTY~a--Hkk~i~~igfL 793 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASK-DKTVKLWSIKPEGDE--IG--------TSACQFTYQA--HKKPIHDIGFL 793 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccC-CceEEEEEeccccCc--cc--------cceeeeEhhh--ccCcccceeee
Confidence 45778899999999876666677889998 556999999886221 11 1134444432 44679999999
Q ss_pred cCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 441 HYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 441 pDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
.|-++++++ ||-+|+|+ |+-|
T Consensus 794 ~~lr~i~Sc--D~giHlWD--PFig 814 (1034)
T KOG4190|consen 794 ADLRSIASC--DGGIHLWD--PFIG 814 (1034)
T ss_pred eccceeeec--cCcceeec--cccc
Confidence 999998876 89999998 5544
No 296
>KOG4415 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.88 E-value=0.044 Score=57.14 Aligned_cols=38 Identities=24% Similarity=0.568 Sum_probs=34.5
Q ss_pred CCCccccceeEeeeeeEeeccCC-ccccccceeEEEEcCC
Q 001935 682 SVKSYERSHWYLSNAEVQMSSGR-LPIWQSSKISFFKMDS 720 (994)
Q Consensus 682 ~~~~~e~~~~~ls~aEvq~~~~~-~piW~~~~i~F~~m~~ 720 (994)
+...+|+..| |+.+|+.+|.++ ..|||.|||.|+.+..
T Consensus 20 dh~GdEDeeW-l~hVEi~Th~gPHRriWmGPQFef~eih~ 58 (247)
T KOG4415|consen 20 DHIGDEDEEW-LPHVEIRTHLGPHRRIWMGPQFEFFEIHE 58 (247)
T ss_pred cccCcccccc-ccceEEEeccCccceeeecCceeEEEecC
Confidence 5567999999 999999999998 6999999999998875
No 297
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=93.76 E-value=16 Score=47.61 Aligned_cols=76 Identities=9% Similarity=0.266 Sum_probs=51.0
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCE
Q 001935 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQW 445 (994)
Q Consensus 367 aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSp-Dg~~ 445 (994)
.....|..|+||+|++.||.--. +. |.+|.... +.| -+.++++-.. ...+..+.|+| +...
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~-~~-vqLWt~~N-----------YHW----YLKqei~~~~-~~~~~~~~Wdpe~p~~ 363 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLE-DR-VQLWTRSN-----------YHW----YLKQEIRFSS-SESVNFVKWDPEKPLR 363 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEec-CC-ceEEEeeC-----------CEE----EEEEEEEccC-CCCCCceEECCCCCCE
Confidence 34567899999999999998665 44 99999742 112 2333443221 22344599999 4567
Q ss_pred EEEEeCCCeEEEEec
Q 001935 446 IAIVSSKGTCHVFVL 460 (994)
Q Consensus 446 LAsgS~dGTVhIw~I 460 (994)
|.+.+..|.+.+++.
T Consensus 364 L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 364 LHVLTSNGQYEIYDF 378 (928)
T ss_pred EEEEecCCcEEEEEE
Confidence 888888888766554
No 298
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=0.12 Score=61.10 Aligned_cols=118 Identities=17% Similarity=0.180 Sum_probs=75.8
Q ss_pred cccCCCCeEEEEECCC-------CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCc--------ccCC
Q 001935 343 ADMDNAGIVVVKDFVT-------RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC--------MRSG 407 (994)
Q Consensus 343 as~s~dG~V~VwDl~s-------~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~--------~~~~ 407 (994)
.+++.|.+|++|.+.. ..+-.+..+|+.||..+.|=.|-+++|+++ |. |++||---.. ..-+
T Consensus 751 iSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD--~g-iHlWDPFigr~Laq~~dapk~~ 827 (1034)
T KOG4190|consen 751 ISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCD--GG-IHLWDPFIGRLLAQMEDAPKEG 827 (1034)
T ss_pred eeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeecc--Cc-ceeecccccchhHhhhcCcccC
Confidence 4678899999999864 235566789999999999999999998775 44 9999842110 0000
Q ss_pred CCCCccccCC-------------cceEE---------EEEec---ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 408 SGNHKYDWNS-------------SHVHL---------YKLHR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 408 sG~~~~~~~~-------------s~~~l---------~~L~R---G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
.|..-.-... +.+++ .+++- -..++.+.+|+..+.|+|+|++-+.|++-+.+...
T Consensus 828 a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 828 AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN 907 (1034)
T ss_pred CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC
Confidence 0100000000 00111 11111 11245688999999999999999999999987654
Q ss_pred C
Q 001935 463 F 463 (994)
Q Consensus 463 ~ 463 (994)
.
T Consensus 908 G 908 (1034)
T KOG4190|consen 908 G 908 (1034)
T ss_pred C
Confidence 3
No 299
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.00 E-value=0.26 Score=60.15 Aligned_cols=103 Identities=13% Similarity=0.075 Sum_probs=75.7
Q ss_pred ccCCCCeEEEEECCCCcEE-EEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 344 DMDNAGIVVVKDFVTRAII-SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~~i-~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
-|...|.|.+|.-..+... ....+-+.-+..++.|++..++|.++..|. |-||.+... +. ..+
T Consensus 50 ~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-V~v~ql~~~------~p---------~~~ 113 (726)
T KOG3621|consen 50 MGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-VSVFQLNKE------LP---------RDL 113 (726)
T ss_pred EecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-EEeehhhcc------CC---------Ccc
Confidence 4567899999998877533 223334466778999999888887777554 899998531 10 122
Q ss_pred EEEecccc--cccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 423 YKLHRGIT--SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 423 ~~L~RG~t--~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
..+.+++. ...|++++||+|++.|.+|-..|+|+.-.++.
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 23444444 67899999999999999999999999988876
No 300
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=92.75 E-value=11 Score=48.13 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=44.0
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCC
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (994)
+-|+.+|.||+||-...+....|.+-..||..|..+.||++|+.... +.+-++++.
T Consensus 592 avgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t~ 647 (794)
T PF08553_consen 592 AVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDTL 647 (794)
T ss_pred EEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEEe
Confidence 34678999999997766666778888899999999999998664443 457777753
No 301
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.09 E-value=1.2 Score=53.50 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=58.0
Q ss_pred CeEEEEECCCCcEEEEeccCCC--Ce-EEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 349 GIVVVKDFVTRAIISQFKAHTS--PI-SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHts--pI-saLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
..+.|||+.+|...+.|..-.+ ++ .-..+|.|++++|--.. ..|.||+. |. -.|+..
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~--~sisIyEt-ps-----------------f~lld~ 341 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG--NSISIYET-PS-----------------FMLLDK 341 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc--ceEEEEec-Cc-----------------eeeecc
Confidence 4599999999998888877333 22 23689999999986654 56999997 21 123333
Q ss_pred ecccccccEEEEEEccCCCEEEEEe
Q 001935 426 HRGITSATIQDICFSHYSQWIAIVS 450 (994)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~LAsgS 450 (994)
+......|.+..|||.++.||--+
T Consensus 342 -Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 342 -KSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred -cccCCccccCcccCCCcceEEEEc
Confidence 334455799999999988888654
No 302
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=91.52 E-value=0.58 Score=52.36 Aligned_cols=102 Identities=18% Similarity=0.125 Sum_probs=68.7
Q ss_pred cccCCCCeEEEEECC-CCcEEEE-eccCCCCeEEEEEC-CCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcc
Q 001935 343 ADMDNAGIVVVKDFV-TRAIISQ-FKAHTSPISALCFD-PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (994)
Q Consensus 343 as~s~dG~V~VwDl~-s~~~i~~-~~aHtspIsaLaFS-PdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~ 419 (994)
-+++.||.+.-||+. .++.+.+ .+-|+..|.++.=+ |.++++||+|-|.+ ||+||...- |
T Consensus 182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm------~---------- 244 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNM------G---------- 244 (339)
T ss_pred EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcc------c----------
Confidence 367899999999999 4455543 77899999998877 56899999999655 999998531 2
Q ss_pred eEEEEEecccccccEEEEEEccCCC--EEEEEeCCCeEEEEecCCCCC
Q 001935 420 VHLYKLHRGITSATIQDICFSHYSQ--WIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSpDg~--~LAsgS~dGTVhIw~I~~~gg 465 (994)
+.|++-. -...||.|.++|--. .|+++=-+ -.+|-+++...+
T Consensus 245 kPl~~~~---v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 245 KPLFKAK---VGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVL 288 (339)
T ss_pred CccccCc---cccceEEEEecchhhhHHHHHHHhc-CceEEEeccccc
Confidence 2343321 224689999998533 33333333 345666655443
No 303
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=91.47 E-value=0.47 Score=53.98 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=71.3
Q ss_pred ccCCCCeEEEEECCCC----cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCc
Q 001935 344 DMDNAGIVVVKDFVTR----AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~----~~i~~~~aHtspIsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s 418 (994)
.+-..|.|.++|+..+ .-.++---|.+.|++|..=. ++.+|...+-+|+ |.+||..-.-. +
T Consensus 269 ~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~----~--------- 334 (425)
T KOG2695|consen 269 NGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGK-IKLYDLRATKC----K--------- 334 (425)
T ss_pred ecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCc-eeEeeehhhhc----c---------
Confidence 4568899999999876 33344456999999987765 7888888888787 99999853100 0
Q ss_pred ceEEEEEecccccc-cEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 419 HVHLYKLHRGITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 419 ~~~l~~L~RG~t~a-~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
+-+..+ .||-+. .-.-+...+....|+++++|--.+||.+...
T Consensus 335 -~~V~qY-eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 335 -KSVMQY-EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred -cceeee-ecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 113333 244322 1112344567789999999999999999863
No 304
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=91.13 E-value=0.78 Score=61.15 Aligned_cols=118 Identities=14% Similarity=0.178 Sum_probs=84.7
Q ss_pred cccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCC-------------
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGS------------- 408 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~-aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~s------------- 408 (994)
.+++.||.|++|.-..++.+..++ +-.+.|+++.|+.+|.....+..||. +-+|++.|-+..+..
T Consensus 2224 ltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~-l~l~q~~pk~~~s~qchnk~~~Df~Fi~ 2302 (2439)
T KOG1064|consen 2224 LTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD-LSLWQASPKPYTSWQCHNKALSDFRFIG 2302 (2439)
T ss_pred EecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCc-eeecccCCcceeccccCCccccceeeee
Confidence 467899999999999988877776 34489999999999999999988776 899998764211000
Q ss_pred ------CCCc-----cccC----CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 409 ------GNHK-----YDWN----SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 409 ------G~~~-----~~~~----~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
|... ..|. +...++++. |...++++++-|.-+.|.+|+.+|.|.||++....-
T Consensus 2303 s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~----H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2303 SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTC----HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred hhhhccccCCCCCcccchhcccCcccceeeee----cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence 0000 0111 111223322 233578999999999999999999999999987543
No 305
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.97 E-value=0.19 Score=62.34 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=68.1
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCC
Q 001935 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (994)
Q Consensus 74 ~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~ 152 (994)
+-+.|++|.-+| ++++++. .|.-.+-+..|+.+|..|+-+-++ .+++..+.
T Consensus 1112 ~~~hL~vG~~~Geik~~nv~-sG~~e~s~ncH~SavT~vePs~dg-------------s~~Ltsss-------------- 1163 (1516)
T KOG1832|consen 1112 GTNHLAVGSHAGEIKIFNVS-SGSMEESVNCHQSAVTLVEPSVDG-------------STQLTSSS-------------- 1163 (1516)
T ss_pred CCceEEeeeccceEEEEEcc-CccccccccccccccccccccCCc-------------ceeeeecc--------------
Confidence 346788898877 9999995 677778889999999988744322 24443211
Q ss_pred ccccccCCcCCCCCCCCCCCCEEEEEECC-CCeEEEEEeCCCcEEEEEecC--C-eEEEEeCCeEEEEECCCCceeEEEe
Q 001935 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQ-SHCYEHVLRFRSSVCMVRCSP--R-IVAVGLATQIYCFDALTLENKFSVL 228 (994)
Q Consensus 153 ~~~vr~g~~d~~~~~~~~sp~tVrLWDlk-tge~V~tL~f~S~V~sV~~S~--~-iLAVgl~~~I~IwDa~Tle~l~tL~ 228 (994)
| +.--..+|++. ++...|++.-. .+|.|+. + .++....+...+||+.|...+.++.
T Consensus 1164 --------~---------S~PlsaLW~~~s~~~~~Hsf~ed---~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1164 --------S---------SSPLSALWDASSTGGPRHSFDED---KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred --------c---------cCchHHHhccccccCcccccccc---ceeehhhhHHHHHhcccccceEEEecccCcHHHHhc
Confidence 0 01134578876 45666666433 3445655 2 3333445679999999987766544
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.87 E-value=26 Score=37.60 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=59.8
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 001935 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG 428 (994)
|.|..++.. +++...+ ..-.--+.|+|+|||+.|..+......|..|++... +. .+ ...+.+..+..+
T Consensus 115 g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~------~~---~~-~~~~~~~~~~~~ 182 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD------GG---EL-SNRRVFIDFPGG 182 (246)
T ss_dssp EEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT------TC---CE-EEEEEEEE-SSS
T ss_pred cceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEecccc------cc---ce-eeeeeEEEcCCC
Confidence 667677766 4433222 233445789999999988767665666778887431 10 00 001223333322
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 001935 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 429 ~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I 460 (994)
. .....+++..+|+..++.-..+.|++|+-
T Consensus 183 ~--g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 183 P--GYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp S--CEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred C--cCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 1 24788999999998888778888888873
No 307
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=90.80 E-value=0.65 Score=52.93 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=55.5
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc-------------c-cccEE
Q 001935 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI-------------T-SATIQ 435 (994)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~-------------t-~a~I~ 435 (994)
.-|+++.|+.+|.+||||...|+ +-+|.-... . .+.|.++... . .-+|.
T Consensus 26 diis~vef~~~Ge~LatGdkgGR-Vv~f~r~~~------~----------~~ey~~~t~fqshepEFDYLkSleieEKin 88 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGR-VVLFEREKL------Y----------KGEYNFQTEFQSHEPEFDYLKSLEIEEKIN 88 (433)
T ss_pred cceeeEEeecccceEeecCCCCe-EEEeecccc------c----------ccceeeeeeeeccCcccchhhhhhhhhhhh
Confidence 46899999999999999999777 567764331 1 0122221111 1 12588
Q ss_pred EEEEccCCC--EEEEEeCCCeEEEEecCCCCCC
Q 001935 436 DICFSHYSQ--WIAIVSSKGTCHVFVLSPFGGD 466 (994)
Q Consensus 436 sIaFSpDg~--~LAsgS~dGTVhIw~I~~~gg~ 466 (994)
.|.|-++++ .+..++.|.||++|++...+..
T Consensus 89 kIrw~~~~n~a~FLlstNdktiKlWKi~er~~k 121 (433)
T KOG1354|consen 89 KIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSK 121 (433)
T ss_pred hceecCCCCccEEEEecCCcceeeeeeeccccc
Confidence 899998875 5677889999999999775543
No 308
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=90.76 E-value=0.55 Score=38.92 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=28.5
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 431 SATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 431 ~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
.+.|..++|+|....||.++.+|.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999983
No 309
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=90.61 E-value=0.67 Score=53.00 Aligned_cols=105 Identities=14% Similarity=0.215 Sum_probs=60.2
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
.+...|||+.+++....... ...+....|||+|+.||-.. ++.|.++++........+ .+ +. ..++ -
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~--~~nly~~~~~~~~~~~lT----~d--g~-~~i~---n 88 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR--DNNLYLRDLATGQETQLT----TD--GE-PGIY---N 88 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE--TTEEEEESSTTSEEEESE----S----T-TTEE---E
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe--cCceEEEECCCCCeEEec----cc--cc-eeEE---c
Confidence 46799999999765444333 67899999999999999887 567888876421000000 00 00 0000 0
Q ss_pred ccc--------cccEEEEEEccCCCEEEEEeCCCe-EEEEecCCCCC
Q 001935 428 GIT--------SATIQDICFSHYSQWIAIVSSKGT-CHVFVLSPFGG 465 (994)
Q Consensus 428 G~t--------~a~I~sIaFSpDg~~LAsgS~dGT-VhIw~I~~~gg 465 (994)
|.. -..=..+.|||||++||....|.+ |+.+.+..+..
T Consensus 89 G~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 89 GVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp SB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESS
T ss_pred CccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCC
Confidence 100 000134789999999999776654 77776655443
No 310
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=90.60 E-value=0.88 Score=53.89 Aligned_cols=98 Identities=20% Similarity=0.301 Sum_probs=65.6
Q ss_pred CeEEEEECCCCc--EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 349 GIVVVKDFVTRA--IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 349 G~V~VwDl~s~~--~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
..+.++|+.+++ .+..+.+|.. +-+|+|||++||-++.++....||-..-. + ..+.+|.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~------~----------~~~~~Lt 278 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLD------G----------KNLPRLT 278 (425)
T ss_pred ceEEEEeccCCccceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCC------C----------Ccceecc
Confidence 468899998865 5566666654 56899999999988776555555544211 2 1233344
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCC-eEEEEecCCCCCCc
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSSKG-TCHVFVLSPFGGDS 467 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~dG-TVhIw~I~~~gg~~ 467 (994)
.+.... ..=+|||||++|+-.|+++ .-.||-++..++.+
T Consensus 279 ~~~gi~--~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 279 NGFGIN--TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred cCCccc--cCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 433222 3668999999999888774 46788887777654
No 311
>PRK02888 nitrous-oxide reductase; Validated
Probab=90.21 E-value=2.3 Score=52.47 Aligned_cols=116 Identities=12% Similarity=0.086 Sum_probs=68.9
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE---cCCCe-----------EEEEeCCC--CcccCC-
Q 001935 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS---VYGNN-----------INIFRIMP--SCMRSG- 407 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS---~dGt~-----------IrVwdi~p--~~~~~~- 407 (994)
..+.+++.+.|..+.+++.++.--..| --++|+|||+++++.+ +.|.. +.+|++.. ....++
T Consensus 211 ~ey~~~vSvID~etmeV~~qV~Vdgnp-d~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK 289 (635)
T PRK02888 211 KKYRSLFTAVDAETMEVAWQVMVDGNL-DNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGK 289 (635)
T ss_pred cceeEEEEEEECccceEEEEEEeCCCc-ccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCC
Confidence 356788999999998888888765433 5679999999998875 33332 23333320 000000
Q ss_pred ----CC--CCccccCC----cceEEEEEecccccccEEEEEEccCCCEEEEEeC-CCeEEEEecCCCC
Q 001935 408 ----SG--NHKYDWNS----SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFG 464 (994)
Q Consensus 408 ----sG--~~~~~~~~----s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~-dGTVhIw~I~~~g 464 (994)
.+ ..-.|... ....++.+--| ...+.|++||||+++.+++. +.||.|.++....
T Consensus 290 ~~~V~gn~V~VID~~t~~~~~~~v~~yIPVG---KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 290 FKTIGGSKVPVVDGRKAANAGSALTRYVPVP---KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred EEEECCCEEEEEECCccccCCcceEEEEECC---CCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 00 00000000 01122222222 34678999999999887665 8899999998754
No 312
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=90.13 E-value=3.2 Score=54.61 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=66.3
Q ss_pred cCCCCeEEEEECCCCcEEEEeccC---------------CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccC-CC
Q 001935 345 MDNAGIVVVKDFVTRAIISQFKAH---------------TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS-GS 408 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~aH---------------tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~-~s 408 (994)
...++.|++||..++.+. .+.+. ...-..|+|+|+|+.|..++...+.|++||+......- ..
T Consensus 701 d~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g 779 (1057)
T PLN02919 701 MAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG 779 (1057)
T ss_pred ECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence 345678999998776532 22211 12235699999999777787777889999975310000 00
Q ss_pred CCCccccCCcceEEEEEec--cc----ccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 409 GNHKYDWNSSHVHLYKLHR--GI----TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 409 G~~~~~~~~s~~~l~~L~R--G~----t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
|.. .....++.+-. |. .-..-..|+|++||+.+++-+.+++|++|+...
T Consensus 780 g~~-----~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t 834 (1057)
T PLN02919 780 GDP-----TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT 834 (1057)
T ss_pred ccc-----ccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC
Confidence 000 00001111100 00 001235899999999999999999999999754
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.11 E-value=40 Score=38.61 Aligned_cols=71 Identities=18% Similarity=0.303 Sum_probs=48.2
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 001935 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (994)
Q Consensus 369 tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs 448 (994)
..-|-+|+|+++|.++|..|-.|..+-|||..+ | +.+-.. .-..+..++-.+++ |+++
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-------g----------~~~~~~----~l~D~cGva~~~~~-f~~s 273 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-------G----------RLLGSV----PLPDACGVAPTDDG-FLVS 273 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-------C----------CEeecc----ccCceeeeeecCCc-eEEe
Confidence 467899999999999999998899999999854 3 232221 12346777777776 5555
Q ss_pred EeCCCeEEEEecCCCC
Q 001935 449 VSSKGTCHVFVLSPFG 464 (994)
Q Consensus 449 gS~dGTVhIw~I~~~g 464 (994)
++ .|- ++.+....
T Consensus 274 sG-~G~--~~~~~~~~ 286 (305)
T PF07433_consen 274 SG-QGQ--LIRLSPDG 286 (305)
T ss_pred CC-Ccc--EEEccCcc
Confidence 43 443 55555543
No 314
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=89.93 E-value=28 Score=36.46 Aligned_cols=57 Identities=11% Similarity=-0.030 Sum_probs=41.7
Q ss_pred CEEEEEECCCCeEEEEE-eCCC------cEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEee
Q 001935 173 TAVRFYSFQSHCYEHVL-RFRS------SVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL-~f~S------~V~sV~~S~~iLAVgl-~~~I~IwDa~Tle~l~tL~t 229 (994)
+.|..+|.++|+.+... .... ......+..+.++++. .+.|+++|+.+++.+.....
T Consensus 86 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 86 GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 57999999999998884 4321 1234455567777777 78999999999998877765
No 315
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=89.82 E-value=0.9 Score=50.24 Aligned_cols=115 Identities=18% Similarity=0.167 Sum_probs=69.7
Q ss_pred cccCCCCeEEEEECCCCc-EEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCeEEEEeCCCCccc-CCCCCCccccCCcc
Q 001935 343 ADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMR-SGSGNHKYDWNSSH 419 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~-~i~~~~aHtspIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~-~~sG~~~~~~~~s~ 419 (994)
.-+..+|.|.|||..+.. .+..+++|..+|+-+-|.|. +..|.|+|++|.. --||....+-+ +.....-+.|-..-
T Consensus 196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl-w~wdas~~~l~i~~~~s~~s~WLsgD 274 (319)
T KOG4714|consen 196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL-WHWDASTTFLSISNQASVISSWLSGD 274 (319)
T ss_pred EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcE-EEEcCCCceEEecCccccccccccCC
Confidence 356789999999999875 45778999999999999984 6799999998874 45775421100 00000111222110
Q ss_pred --eEEEEEecccccccEEEE-EEccCCCEEEEEeCCCeEEEEe
Q 001935 420 --VHLYKLHRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 420 --~~l~~L~RG~t~a~I~sI-aFSpDg~~LAsgS~dGTVhIw~ 459 (994)
+-+.++. +.-+....+| +|.--|-.|++|++-+-|.|++
T Consensus 275 ~v~s~i~i~-~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 275 PVKSRIEIT-SLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cccceEeee-ccccccceeeeeeeccCceEEeccccceEEEec
Confidence 1111111 1111212222 3555678899999998888764
No 316
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.82 E-value=1.2 Score=54.15 Aligned_cols=75 Identities=19% Similarity=0.323 Sum_probs=57.6
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-cccccccE-EEEEEccCCCEEEE
Q 001935 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATI-QDICFSHYSQWIAI 448 (994)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~-RG~t~a~I-~sIaFSpDg~~LAs 448 (994)
.|-.+-++|.=.++|++..+|. +-+.++. ++.+..+- +|. .+ .+++|.|||+.||+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~ge-lli~R~n------------------~qRlwtip~p~~---~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGE-LLIHRLN------------------WQRLWTIPIPGE---NVTASLCWRPDGKLLAV 79 (665)
T ss_pred ceEEEEEcCccchhheeccCCc-EEEEEec------------------cceeEeccCCCC---ccceeeeecCCCCEEEE
Confidence 4667889999999999999887 4555552 13455554 332 23 59999999999999
Q ss_pred EeCCCeEEEEecCCCCCCc
Q 001935 449 VSSKGTCHVFVLSPFGGDS 467 (994)
Q Consensus 449 gS~dGTVhIw~I~~~gg~~ 467 (994)
|=.||||.|-+++..++-.
T Consensus 80 g~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred EecCCeEEEEEccCCCcee
Confidence 9999999999998876544
No 317
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.54 E-value=0.79 Score=57.04 Aligned_cols=99 Identities=17% Similarity=0.278 Sum_probs=70.2
Q ss_pred cccCCCCeEEEEECCCCcEEE--EeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcce
Q 001935 343 ADMDNAGIVVVKDFVTRAIIS--QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~--~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~ 420 (994)
.+....|.|.||- .+|+.-. +.+-| +++|||+|.--.||.+=+.| .+.||.... .
T Consensus 35 fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g-~~~v~~~~~------------------~ 91 (1416)
T KOG3617|consen 35 FSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMG-VSDVQKTNT------------------T 91 (1416)
T ss_pred ecCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccc-eeEEEecCC------------------c
Confidence 3556778898884 3343221 22223 34599999998898887766 489998743 1
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
..++. --.+.+.|+-+.|||||..|+++-.=|.||+|....-|.
T Consensus 92 e~htv-~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~ 135 (1416)
T KOG3617|consen 92 ETHTV-VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGE 135 (1416)
T ss_pred eeeee-ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccc
Confidence 22222 123678999999999999999999999999999886543
No 318
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.33 E-value=1.8 Score=53.49 Aligned_cols=101 Identities=20% Similarity=0.213 Sum_probs=70.9
Q ss_pred ccccCCCCeEEEEECCCCc-EEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcc
Q 001935 342 GADMDNAGIVVVKDFVTRA-IISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~~-~i~~~~aHtspIsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~ 419 (994)
++++..|-.|..||+.+.. .+-.+..-.+.-+-++++. ++..|| |.+|+.|+|||+.- |.
T Consensus 130 latcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla--sshg~~i~vwd~r~-------gs--------- 191 (1081)
T KOG0309|consen 130 LATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA--SSHGNDIFVWDLRK-------GS--------- 191 (1081)
T ss_pred eeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh--hccCCceEEEeccC-------CC---------
Confidence 4567788899999999864 3333333334456678874 555564 45599999999864 21
Q ss_pred eEEEEEecccccccEEEEEEccC-CCEEEEEeCCCeEEEEecCC
Q 001935 420 VHLYKLHRGITSATIQDICFSHY-SQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSpD-g~~LAsgS~dGTVhIw~I~~ 462 (994)
..+..+++ +.+.|+.++|..- -..+.+++.||||+.|+-+.
T Consensus 192 ~pl~s~K~--~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 192 TPLCSLKG--HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred cceEEecc--cceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 35677765 4568999998753 24678999999999999654
No 319
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=89.25 E-value=0.91 Score=54.75 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=44.0
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCC
Q 001935 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (994)
-|..||.|++||...+. +++.-+.-..+.++++|+|.+++.|+.+|. |.+||+.-
T Consensus 276 lGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGe-lQ~FD~AL 330 (545)
T PF11768_consen 276 LGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGE-LQCFDMAL 330 (545)
T ss_pred EEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCce-EEEEEeec
Confidence 46789999999998763 233333445678999999999999999887 99999864
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.08 E-value=1.3 Score=54.95 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=66.1
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
+-+...|.|.+++....- .+...|... +-+|.++||+|.||+ +.|..+-.. .-.+.
T Consensus 53 ~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~---------------~~~~~ 108 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTD---------------DEITQ 108 (846)
T ss_pred eeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCc-EEEeeccCC---------------cccee
Confidence 456789999999987542 445556543 889999999999988 667766321 01245
Q ss_pred EEEecccccccEEEEEEccC-----CCEEEEEeCCCeEEEEecCCC
Q 001935 423 YKLHRGITSATIQDICFSHY-----SQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpD-----g~~LAsgS~dGTVhIw~I~~~ 463 (994)
+.|.| +|.+|+|+|| ++.+++|+..| +-++.-+-.
T Consensus 109 ~df~r-----piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl 148 (846)
T KOG2066|consen 109 YDFKR-----PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL 148 (846)
T ss_pred EecCC-----cceeEEeccchhhhhhhheeecCcce-EEEehhhhh
Confidence 66654 6899999999 78999999999 777754433
No 321
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=87.94 E-value=32 Score=38.79 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=55.5
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC--CEEEEE
Q 001935 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS--QWIAIV 449 (994)
Q Consensus 372 IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg--~~LAsg 449 (994)
=.+.+|+....++|+++.+|+ +.|||+... +. .+ ....-.|-+++..|..+.||+-| ..|..+
T Consensus 206 gF~~S~s~~~~~FAv~~Qdg~-~~I~DVR~~------~t-------pm-~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s 270 (344)
T KOG4532|consen 206 GFYNSFSENDLQFAVVFQDGT-CAIYDVRNM------AT-------PM-AEISSTRPHHNGAFRVCRFSLYGLLDLLFIS 270 (344)
T ss_pred ceeeeeccCcceEEEEecCCc-EEEEEeccc------cc-------ch-hhhcccCCCCCCceEEEEecCCCcceEEEEe
Confidence 356789999999999999887 899999642 21 00 11112355567789999999865 356666
Q ss_pred eCCCeEEEEecCCCCC
Q 001935 450 SSKGTCHVFVLSPFGG 465 (994)
Q Consensus 450 S~dGTVhIw~I~~~gg 465 (994)
-.-+-+||-++..+..
T Consensus 271 Ehfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 271 EHFSRVHVVDTRNYVN 286 (344)
T ss_pred cCcceEEEEEcccCce
Confidence 6667899988877643
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.80 E-value=1.1e+02 Score=40.69 Aligned_cols=52 Identities=8% Similarity=0.147 Sum_probs=36.1
Q ss_pred CCeEEEEECCCC---cEEEEeccCCCCeEEEEECCCCCEEEE---EEcCCCeEEEEeCC
Q 001935 348 AGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGTLLVT---ASVYGNNINIFRIM 400 (994)
Q Consensus 348 dG~V~VwDl~s~---~~i~~~~aHtspIsaLaFSPdGtlLAT---AS~dGt~IrVwdi~ 400 (994)
++.|.+|.-+.. .-...++....+|..|+|+.++.+||. ..+ ++.|++|-+.
T Consensus 265 d~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e-~~~v~lwt~~ 322 (1265)
T KOG1920|consen 265 DSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLE-NSLVQLWTTG 322 (1265)
T ss_pred CCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccc-cceEEEEEec
Confidence 446677665432 223334555567999999999999998 444 6669999974
No 323
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=87.75 E-value=1.3 Score=36.82 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=27.2
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCeEEEEeC
Q 001935 369 TSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (994)
Q Consensus 369 tspIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (994)
..+|.+++|+|...+||.++.+|. |.||++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCe-EEEEEC
Confidence 357999999999999999999887 899998
No 324
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=87.60 E-value=1.6 Score=53.08 Aligned_cols=58 Identities=17% Similarity=0.314 Sum_probs=50.2
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCCeE-EEEECCCCCEEEEEEcCCCeEEEEeCCC
Q 001935 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSPIS-ALCFDPSGTLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~~~i~~~~aHtspIs-aLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (994)
+|.+..+|.|.+.-+. -+.+.+|.-|..++. +|||.|||++||.|=.+|+ |++-|+..
T Consensus 35 iA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~ 93 (665)
T KOG4640|consen 35 IATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEK 93 (665)
T ss_pred hheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccC
Confidence 3556788999999888 677899998888888 9999999999999999876 99999864
No 325
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=87.46 E-value=11 Score=40.92 Aligned_cols=56 Identities=14% Similarity=0.215 Sum_probs=46.2
Q ss_pred CCCCCCEEEEEECCCC-----eEEEEEeCCCcEEEEEecCCeEEEEeCCeEEEEECCCCce
Q 001935 168 CVNSPTAVRFYSFQSH-----CYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLEN 223 (994)
Q Consensus 168 ~~~sp~tVrLWDlktg-----e~V~tL~f~S~V~sV~~S~~iLAVgl~~~I~IwDa~Tle~ 223 (994)
+++..++|.+|.+... +..+.+..+..+..|.+.++.|+++..+...+.|+.+...
T Consensus 109 ~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~ 169 (275)
T PF00780_consen 109 CVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSP 169 (275)
T ss_pred EEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCc
Confidence 3445589999887653 5778888899999999999999999999999999987654
No 326
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.40 E-value=16 Score=46.12 Aligned_cols=46 Identities=11% Similarity=0.034 Sum_probs=36.9
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEecCC-------eEEEEeCCeEEEEE
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR-------IVAVGLATQIYCFD 217 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S~V~sV~~S~~-------iLAVgl~~~I~IwD 217 (994)
+++|.|-.+-+.+..+++.|.-++.+|+++|+ .+++|....+.++.
T Consensus 92 DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~e 144 (846)
T KOG2066|consen 92 DGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSE 144 (846)
T ss_pred CCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcceEEEeh
Confidence 36899999999999999999999999999884 45555544477764
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.59 E-value=51 Score=43.54 Aligned_cols=98 Identities=15% Similarity=0.227 Sum_probs=60.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~d--Gt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
..|+|||-+ +..-.+=..-..-=.+|+|-|+|.++|+--.+ +..|.+|.-. |- . +--+.++
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN--------GL-------~-hg~f~l~ 284 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN--------GL-------R-HGEFVLP 284 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC--------Cc-------c-ccccccC
Confidence 789999988 32211111111222369999999999986432 2248888742 31 0 1113332
Q ss_pred cccccccEEEEEEccCCCEEEE---EeCCCeEEEEecCCC
Q 001935 427 RGITSATIQDICFSHYSQWIAI---VSSKGTCHVFVLSPF 463 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAs---gS~dGTVhIw~I~~~ 463 (994)
+-.....|..++|+-++..||+ .....-|.+|-+..|
T Consensus 285 ~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 285 FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 2222223899999999999999 444445999998775
No 328
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=85.72 E-value=1.6 Score=49.82 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=76.0
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 001935 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~ 424 (994)
.+.+-.|-+-|++++.. ..|. -.+.|.++.|.-.+.+|..+-..|. |-+.|+.... . | ..++.+.
T Consensus 230 ~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rn--q--G--------~~~~a~r 294 (425)
T KOG2695|consen 230 VGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRN--Q--G--------NGWCAQR 294 (425)
T ss_pred ccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeecc--c--C--------CCcceEE
Confidence 34566788888888742 2333 6678999999999999998888776 8889986421 1 1 2244455
Q ss_pred EecccccccEEEEEEcc-CCCEEEEEeCCCeEEEEecCCCCCCc---ccccc
Q 001935 425 LHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGDS---GFQTL 472 (994)
Q Consensus 425 L~RG~t~a~I~sIaFSp-Dg~~LAsgS~dGTVhIw~I~~~gg~~---~~~~H 472 (994)
|. |...|+++.-=. ++++|++++.+|+|++||+...+... ....|
T Consensus 295 ly---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH 343 (425)
T KOG2695|consen 295 LY---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH 343 (425)
T ss_pred EE---cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc
Confidence 54 334455555444 57899999999999999998766633 33455
No 329
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=85.56 E-value=1.4 Score=54.19 Aligned_cols=99 Identities=17% Similarity=0.290 Sum_probs=70.9
Q ss_pred cccCCCCeEEEEECCCC---------------cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCC
Q 001935 343 ADMDNAGIVVVKDFVTR---------------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG 407 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~---------------~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~ 407 (994)
+-++.||.++|..+.+. ..-.++.+|...|.-+.|+.+.+.|-|.+++| .|.||-+-.
T Consensus 30 AcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G-lIiVWmlyk------ 102 (1189)
T KOG2041|consen 30 ACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG-LIIVWMLYK------ 102 (1189)
T ss_pred EeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc-eEEEEeeec------
Confidence 35677888888776542 23367889999999999999999998888855 699998743
Q ss_pred CCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 001935 408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 408 sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
|+ |... . .-.| ....|.+++|..||+.|++.-.||.|.|=.
T Consensus 103 -gs----W~EE---M-iNnR--nKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 103 -GS----WCEE---M-INNR--NKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred -cc----HHHH---H-hhCc--CccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 21 2111 0 1112 234799999999999999988888775433
No 330
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=85.53 E-value=8.3 Score=37.81 Aligned_cols=65 Identities=22% Similarity=0.335 Sum_probs=45.5
Q ss_pred eEEEEE---CCCC-CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 001935 372 ISALCF---DPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (994)
Q Consensus 372 IsaLaF---SPdG-tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LA 447 (994)
|++|++ +-|| .-|+.||. +..||||+-. ..++++.. ...|.+++=... ..++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~-D~~IRvf~~~-------------------e~~~Ei~e---~~~v~~L~~~~~-~~F~ 57 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSD-DFEIRVFKGD-------------------EIVAEITE---TDKVTSLCSLGG-GRFA 57 (111)
T ss_pred eeEEEEEecCCCCcceEEEecC-CcEEEEEeCC-------------------cEEEEEec---ccceEEEEEcCC-CEEE
Confidence 455555 4444 35777777 5679999942 36677643 346788877766 6689
Q ss_pred EEeCCCeEEEEec
Q 001935 448 IVSSKGTCHVFVL 460 (994)
Q Consensus 448 sgS~dGTVhIw~I 460 (994)
.+..+|||-||+-
T Consensus 58 Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 58 YALANGTVGVYDR 70 (111)
T ss_pred EEecCCEEEEEeC
Confidence 9999999998864
No 331
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=84.97 E-value=7.5 Score=46.25 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=59.5
Q ss_pred ccCCCccccccccccccCCCC--eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccC
Q 001935 329 VSPNSVWKVGRHAGADMDNAG--IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 406 (994)
Q Consensus 329 ~s~s~~~k~g~~~~as~s~dG--~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~ 406 (994)
..++|+++..++ ....+| .|.+.|+.++.... +..-...-..=.|+|||+.|+-+|.++..-+||.....
T Consensus 243 P~fspDG~~l~f---~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~---- 314 (425)
T COG0823 243 PAFSPDGSKLAF---SSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLE---- 314 (425)
T ss_pred ccCCCCCCEEEE---EECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCC----
Confidence 344555554432 223344 47777888776332 32211111244799999999988877666688876543
Q ss_pred CCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 001935 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (994)
Q Consensus 407 ~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~d 452 (994)
|. ....+++.-|.. . .-.|||||++|+..+..
T Consensus 315 --g~--------~~~riT~~~~~~--~--~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 315 --GS--------QVTRLTFSGGGN--S--NPVWSPDGDKIVFESSS 346 (425)
T ss_pred --CC--------ceeEeeccCCCC--c--CccCCCCCCEEEEEecc
Confidence 21 123333332221 1 57799999999998854
No 332
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=84.93 E-value=59 Score=34.82 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=39.3
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc-cCCCEEEEEe
Q 001935 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS-HYSQWIAIVS 450 (994)
Q Consensus 372 IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFS-pDg~~LAsgS 450 (994)
.--|+++.+|++.++.-. +..|.+|+.. | ..+.++.-. ...+.+++|. +|.+.|.+.+
T Consensus 186 pDG~~vD~~G~l~va~~~-~~~I~~~~p~--------G----------~~~~~i~~p--~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADWG-GGRIVVFDPD--------G----------KLLREIELP--VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEEBTTS-EEEEEET-TTEEEEEETT--------S----------CEEEEEE-S--SSSEEEEEEESTTSSEEEEEE
T ss_pred CCcceEcCCCCEEEEEcC-CCEEEEECCC--------c----------cEEEEEcCC--CCCEEEEEEECCCCCEEEEEe
Confidence 567999999998776554 4558888842 4 355555433 1368999994 7878887766
Q ss_pred C
Q 001935 451 S 451 (994)
Q Consensus 451 ~ 451 (994)
.
T Consensus 245 a 245 (246)
T PF08450_consen 245 A 245 (246)
T ss_dssp B
T ss_pred C
Confidence 4
No 333
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.90 E-value=38 Score=43.09 Aligned_cols=88 Identities=15% Similarity=0.304 Sum_probs=54.8
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCC--cceEEE---EEecccccccEEEEEEccCC-
Q 001935 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS--SHVHLY---KLHRGITSATIQDICFSHYS- 443 (994)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~--s~~~l~---~L~RG~t~a~I~sIaFSpDg- 443 (994)
-.|..|.+||+|++||-++.+| |-|-.+-.....+ |. ..+-.. .++... .|.+......|..+.|.|.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r~g~~--~~-~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG--VVVLELPRRWGKN--GE-FEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE 159 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc--EEEEEeccccCcc--cc-ccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC
Confidence 4688899999999999999855 5666662110000 00 000001 111110 11222234579999999974
Q ss_pred --CEEEEEeCCCeEEEEecCC
Q 001935 444 --QWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 444 --~~LAsgS~dGTVhIw~I~~ 462 (994)
..|++=++|+++++|++..
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCeEEEEecCCEEEEEecCC
Confidence 8999999999999999964
No 334
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=83.35 E-value=95 Score=35.96 Aligned_cols=86 Identities=14% Similarity=0.095 Sum_probs=47.8
Q ss_pred CCCeEEEEECCCCcEEEEecc-----CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceE
Q 001935 347 NAGIVVVKDFVTRAIISQFKA-----HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~a-----HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~ 421 (994)
.+|.+..+|..+++.+..... ..+|+ + -+| +|..++.+|. +.++|..+ | +.
T Consensus 302 ~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~----v-~~g-~l~v~~~~G~-l~~ld~~t-------G----------~~ 357 (394)
T PRK11138 302 QNDRVYALDTRGGVELWSQSDLLHRLLTAPV----L-YNG-YLVVGDSEGY-LHWINRED-------G----------RF 357 (394)
T ss_pred CCCeEEEEECCCCcEEEcccccCCCcccCCE----E-ECC-EEEEEeCCCE-EEEEECCC-------C----------CE
Confidence 456677777777666544321 12232 2 144 5556777675 77888643 4 34
Q ss_pred EEEEecccccccEEE-EEEccCCCEEEEEeCCCeEEEEec
Q 001935 422 LYKLHRGITSATIQD-ICFSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 422 l~~L~RG~t~a~I~s-IaFSpDg~~LAsgS~dGTVhIw~I 460 (994)
+.+.+-+.. .+.+ -.+ .+..|.+++.+|+++.|++
T Consensus 358 ~~~~~~~~~--~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 358 VAQQKVDSS--GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEcCCC--cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 444432211 1221 122 2457889999999988775
No 335
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=82.63 E-value=1.8 Score=50.18 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=52.3
Q ss_pred CCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCC
Q 001935 73 VFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (994)
Q Consensus 73 ~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~ 151 (994)
++.+.++++-.++ |+|-.....-......-+|..-|+.+.+.++- +|+. + +|
T Consensus 161 ~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--------------~LlS--~-----sG------ 213 (390)
T KOG3914|consen 161 PDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--------------LLLS--G-----SG------ 213 (390)
T ss_pred CCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--------------eeee--c-----CC------
Confidence 4678888887776 88877744333344455688889999988652 3342 2 11
Q ss_pred CccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC
Q 001935 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS 193 (994)
Q Consensus 152 ~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S 193 (994)
+++|++||+++|++++++..++
T Consensus 214 --------------------D~tlr~Wd~~sgk~L~t~dl~s 235 (390)
T KOG3914|consen 214 --------------------DKTLRLWDITSGKLLDTCDLSS 235 (390)
T ss_pred --------------------CCcEEEEecccCCcccccchhH
Confidence 4799999999999999987654
No 336
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=82.08 E-value=29 Score=37.70 Aligned_cols=43 Identities=14% Similarity=-0.043 Sum_probs=36.5
Q ss_pred EEEeCCCcEEEEEecCCeEEEEeCCeEEEEECCCCceeEEEee
Q 001935 187 HVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 187 ~tL~f~S~V~sV~~S~~iLAVgl~~~I~IwDa~Tle~l~tL~t 229 (994)
.++++.+.+.++.+...+|++..++.|.||++.+++.++++..
T Consensus 223 ~~i~W~~~p~~~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 223 STIQWSSAPQSVAYSSPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred cEEEcCCchhEEEEECCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 3678888888888888788888888899999999999988874
No 337
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=80.93 E-value=1.6 Score=48.27 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=62.4
Q ss_pred CeEEEEECCCCcEE-EEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 349 GIVVVKDFVTRAII-SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 349 G~V~VwDl~s~~~i-~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
+..++|++...+.+ -..++-+ .|.+|+-+|--+.|+.++.++..+-|||.... .++ .-+++
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~-~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~---------~~p-----~S~l~--- 220 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALD-AVTALCSHPAQQHLVCCGTDDGIVGLWDARNV---------AMP-----VSLLK--- 220 (319)
T ss_pred cceeeecccccccccccccccc-cchhhhCCcccccEEEEecCCCeEEEEEcccc---------cch-----HHHHH---
Confidence 45567777654321 2222223 39999999988766666666777999998531 010 11122
Q ss_pred ccccccEEEEEEcc-CCCEEEEEeCCCeEEEEecC
Q 001935 428 GITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 428 G~t~a~I~sIaFSp-Dg~~LAsgS~dGTVhIw~I~ 461 (994)
. +.+.|+.+.|.| +...|.++++||.+--|+-+
T Consensus 221 a-hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 221 A-HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred H-hhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 2 457899999998 67899999999998888765
No 338
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=79.90 E-value=13 Score=47.58 Aligned_cols=93 Identities=15% Similarity=0.196 Sum_probs=60.3
Q ss_pred CCCeEEEEECCCC--cEEE-Eec--cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceE
Q 001935 347 NAGIVVVKDFVTR--AIIS-QFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (994)
Q Consensus 347 ~dG~V~VwDl~s~--~~i~-~~~--aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~ 421 (994)
.+..+.-||..-. +++. +.+ ......+|++-+.+|. ||.||.+|. ||+||-. | ..
T Consensus 550 s~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~-iavgs~~G~-IRLyd~~--------g----------~~ 609 (794)
T PF08553_consen 550 SDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGY-IAVGSNKGD-IRLYDRL--------G----------KR 609 (794)
T ss_pred CCCceEEeccCCCCCceeeccccccccCCCceEEEecCCce-EEEEeCCCc-EEeeccc--------c----------hh
Confidence 3455666776542 2221 121 3456788999999985 778999887 9999942 2 11
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 422 l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
-.++.-|. ..+|..|.-+.||+||++.+.. -+.|++..
T Consensus 610 AKT~lp~l-G~pI~~iDvt~DGkwilaTc~t-yLlLi~t~ 647 (794)
T PF08553_consen 610 AKTALPGL-GDPIIGIDVTADGKWILATCKT-YLLLIDTL 647 (794)
T ss_pred hhhcCCCC-CCCeeEEEecCCCcEEEEeecc-eEEEEEEe
Confidence 12222333 3579999999999999887755 45566643
No 339
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.80 E-value=6.3 Score=46.63 Aligned_cols=112 Identities=17% Similarity=0.234 Sum_probs=76.1
Q ss_pred CCCCeEEEEECCCCc-EEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcc-eEE
Q 001935 346 DNAGIVVVKDFVTRA-IISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH-VHL 422 (994)
Q Consensus 346 s~dG~V~VwDl~s~~-~i~~~~-aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~-~~l 422 (994)
-.+|.+.|+|-.... ....++ -|.+||-.+-++|.|.-.++....| .|.-|...+.+.... ...+|...+ .-|
T Consensus 119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g-mVEyWs~e~~~qfPr---~~l~~~~K~eTdL 194 (558)
T KOG0882|consen 119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG-MVEYWSAEGPFQFPR---TNLNFELKHETDL 194 (558)
T ss_pred ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc-eeEeecCCCcccCcc---ccccccccccchh
Confidence 357788888876543 444444 4999999999999999999888844 699999763211110 011222211 123
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
|.+-.. .....++.|||||..+++-+.|.+|++|.+...
T Consensus 195 y~f~K~--Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 195 YGFPKA--KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred hccccc--ccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 333221 125789999999999999999999999997654
No 340
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.73 E-value=78 Score=38.74 Aligned_cols=55 Identities=9% Similarity=0.096 Sum_probs=43.5
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeC
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (994)
+.++.+|.|++||-...+....|++-..+|.-+..+.||++|+... .+.+-+-++
T Consensus 445 vvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t 499 (644)
T KOG2395|consen 445 VVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDT 499 (644)
T ss_pred EEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEE
Confidence 3467899999999976667778899999999999999999765333 345666665
No 341
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=79.59 E-value=94 Score=37.43 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=37.1
Q ss_pred CCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 001935 381 GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 381 GtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I 460 (994)
|.+|+..+. + .|.+||+.. + ..+.++. -..|..+.||+|+.++|..+.+ ++.|++.
T Consensus 117 G~LL~~~~~-~-~i~~yDw~~-------~----------~~i~~i~----v~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 117 GNLLGVKSS-D-FICFYDWET-------G----------KLIRRID----VSAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp SSSEEEEET-T-EEEEE-TTT-------------------EEEEES----S-E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred CcEEEEECC-C-CEEEEEhhH-------c----------ceeeEEe----cCCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 999988876 3 599999864 2 3444442 2348999999999999999866 6677765
Q ss_pred CC
Q 001935 461 SP 462 (994)
Q Consensus 461 ~~ 462 (994)
+.
T Consensus 173 ~~ 174 (443)
T PF04053_consen 173 NL 174 (443)
T ss_dssp -H
T ss_pred cc
Confidence 43
No 342
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.40 E-value=5.7 Score=46.42 Aligned_cols=52 Identities=10% Similarity=0.223 Sum_probs=43.9
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEecC---CeEEEEeCC-eEEEEECCCCce
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP---RIVAVGLAT-QIYCFDALTLEN 223 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S~V~sV~~S~---~iLAVgl~~-~I~IwDa~Tle~ 223 (994)
.++|+|.|+++..++.++..+..+++..|.. ..|..|+.. .|+|||++..+.
T Consensus 215 ~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 215 GNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred CceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 4799999999999999998889999998876 477777765 699999987653
No 343
>PRK13616 lipoprotein LpqB; Provisional
Probab=78.59 E-value=11 Score=46.83 Aligned_cols=97 Identities=11% Similarity=0.154 Sum_probs=56.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEE--EEe
Q 001935 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY--KLH 426 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~--~L~ 426 (994)
..+.+++... .....+.+. .++.-.|+|||+.|++.+.....+++.+-.. .+ .++ .+.
T Consensus 379 s~Lwv~~~gg-~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~------~g-----------ql~~~~vd 438 (591)
T PRK13616 379 SSLWVGPLGG-VAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA------TG-----------QLARTPVD 438 (591)
T ss_pred eEEEEEeCCC-cceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCC------Cc-----------eEEEEecc
Confidence 3555666532 222223333 3777899999999999986435555544211 01 222 221
Q ss_pred cccc----cccEEEEEEccCCCEEEEEeCCCeEEEEecCC-CCCC
Q 001935 427 RGIT----SATIQDICFSHYSQWIAIVSSKGTCHVFVLSP-FGGD 466 (994)
Q Consensus 427 RG~t----~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~-~gg~ 466 (994)
.|-. ...|.++.|||||++||... +|.|+|=.|.. .+|.
T Consensus 439 ~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 439 ASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred CchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 1111 23599999999999999987 47666655544 4444
No 344
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.43 E-value=2.2e+02 Score=36.91 Aligned_cols=84 Identities=11% Similarity=0.220 Sum_probs=50.3
Q ss_pred CCeEEEEECCCCc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 348 AGIVVVKDFVTRA-IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 348 dG~V~VwDl~s~~-~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
...|.+|.+..+. .+..+..|.-++.|-+|++.-.-+..|+. .-+-+|+.. |. .+-+.|.
T Consensus 192 t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~--e~l~fY~sd--------~~---------~~cfaf~ 252 (933)
T KOG2114|consen 192 TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS--EFLYFYDSD--------GR---------GPCFAFE 252 (933)
T ss_pred cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC--ceEEEEcCC--------Cc---------ceeeeec
Confidence 3457777777544 34557788889999999876552444442 358889863 20 2345565
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCe
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSSKGT 454 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~dGT 454 (994)
+|++. -+-|..-|..|++....||
T Consensus 253 ~g~kk----~~~~~~~g~~L~v~~~~~~ 276 (933)
T KOG2114|consen 253 VGEKK----EMLVFSFGLLLCVTTDKGT 276 (933)
T ss_pred CCCeE----EEEEEecCEEEEEEccCCC
Confidence 56542 1333334666666665554
No 345
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=77.92 E-value=55 Score=37.91 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=32.5
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEE-EEECCCCCEEEEEEcCCCeEEEEe
Q 001935 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISA-LCFDPSGTLLVTASVYGNNINIFR 398 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~aHtspIsa-LaFSPdGtlLATAS~dGt~IrVwd 398 (994)
++.+|.+.+.|..+++.+...+-+...+.+ ..+ .+| .|..++.+|+ +..|+
T Consensus 341 ~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~-~l~v~t~~G~-l~~~~ 392 (394)
T PRK11138 341 GDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADD-KLLIQARDGT-VYAIT 392 (394)
T ss_pred EeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECC-EEEEEeCCce-EEEEe
Confidence 467899999999999998877654333332 222 244 4555677676 44444
No 346
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=77.46 E-value=4.7 Score=45.67 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=51.9
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---ccc----------c-cccEE
Q 001935 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGI----------T-SATIQ 435 (994)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~---RG~----------t-~a~I~ 435 (994)
.-|+++-|+..|.+|||++..|+ +-+|.-.... | +-|+|. .++ . .-+|.
T Consensus 27 d~ItaVefd~tg~YlatGDkgGR-Vvlfer~~s~-----~-----------ceykf~teFQshe~EFDYLkSleieEKin 89 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGR-VVLFEREKSY-----G-----------CEYKFFTEFQSHELEFDYLKSLEIEEKIN 89 (460)
T ss_pred ceeeEEEeccccceEeecCCCce-EEEeeccccc-----c-----------cchhhhhhhcccccchhhhhhccHHHHhh
Confidence 46899999999999999998666 6677643210 2 222221 111 1 12577
Q ss_pred EEEEccCCC--EEEEEeCCCeEEEEecCCC
Q 001935 436 DICFSHYSQ--WIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 436 sIaFSpDg~--~LAsgS~dGTVhIw~I~~~ 463 (994)
.|-|-.|++ .+..++.|.||+||+|-..
T Consensus 90 ~I~w~~~t~r~hFLlstNdktiKlWKiyek 119 (460)
T COG5170 90 AIEWFDDTGRNHFLLSTNDKTIKLWKIYEK 119 (460)
T ss_pred heeeecCCCcceEEEecCCceeeeeeeecc
Confidence 888887664 5677889999999998653
No 347
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.43 E-value=11 Score=47.70 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=75.4
Q ss_pred ccccCCCCeEEEEECCCCcEEEEeccCCCC-eEEEEECCCCCEEEEEEcCCC----eEEEEeCCCCcccCCCCCCccccC
Q 001935 342 GADMDNAGIVVVKDFVTRAIISQFKAHTSP-ISALCFDPSGTLLVTASVYGN----NINIFRIMPSCMRSGSGNHKYDWN 416 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~~~i~~~~aHtsp-IsaLaFSPdGtlLATAS~dGt----~IrVwdi~p~~~~~~sG~~~~~~~ 416 (994)
++-++.+|.|.+.+-. .+.+.-|+||... |..|-...+-.+|++-.+++. .++||++.+.- +.
T Consensus 38 vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~-----~n------ 105 (933)
T KOG2114|consen 38 VVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD-----KN------ 105 (933)
T ss_pred EEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC-----CC------
Confidence 3456788888777632 3455889999888 666666666689999999887 79999987521 10
Q ss_pred CcceEEEEEe-----cccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 001935 417 SSHVHLYKLH-----RGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 417 ~s~~~l~~L~-----RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
.+-+++|+.+ -+....++.+|+.|-|=+.+|+|=.+|+|..+.
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~ 153 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK 153 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence 0113454432 222244789999999999999999999998875
No 348
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=77.09 E-value=21 Score=41.44 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=65.4
Q ss_pred Ccccccccccc-ccCCCCeEEEEECCCCcEEEEe-ccCCCCeEEEEECCCCCEEEEEEcCC----------CeEEEEeCC
Q 001935 333 SVWKVGRHAGA-DMDNAGIVVVKDFVTRAIISQF-KAHTSPISALCFDPSGTLLVTASVYG----------NNINIFRIM 400 (994)
Q Consensus 333 ~~~k~g~~~~a-s~s~dG~V~VwDl~s~~~i~~~-~aHtspIsaLaFSPdGtlLATAS~dG----------t~IrVwdi~ 400 (994)
++++..++... .|+....++|+|+.+++.+..- ..- . -..++|.+||+.|.-...+. +.|..|++-
T Consensus 133 pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~g 210 (414)
T PF02897_consen 133 PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-K-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLG 210 (414)
T ss_dssp TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-E-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETT
T ss_pred CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-c-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECC
Confidence 34444444333 2344567999999999866432 221 1 12399999999877665432 235555552
Q ss_pred CCcccCCCCCCccccCCcceEEEEEeccccccc-EEEEEEccCCCEEEEEeCCCe--EEEEecCCCC
Q 001935 401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT-IQDICFSHYSQWIAIVSSKGT--CHVFVLSPFG 464 (994)
Q Consensus 401 p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~-I~sIaFSpDg~~LAsgS~dGT--VhIw~I~~~g 464 (994)
. + ......+|+- ..... ..++..|+|++||.+.+.+++ -.||-+....
T Consensus 211 t-------~------~~~d~lvfe~---~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 211 T-------P------QSEDELVFEE---PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp S--------------GGG-EEEEC----TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred C-------C------hHhCeeEEee---cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 2 1 0111345543 23333 678999999999998666655 4666665543
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=76.17 E-value=1.7e+02 Score=34.63 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=38.2
Q ss_pred CCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEeCCeEEEEECCC
Q 001935 172 PTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGLATQIYCFDALT 220 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--~iLAVgl~~~I~IwDa~T 220 (994)
|..|+||+. +|+.+.++.+. +.|..+.|+. ++|+|..++.+++||...
T Consensus 60 p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 60 PNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred CcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCC
Confidence 457999998 56777888776 6899999977 567777788999999863
No 350
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=76.01 E-value=19 Score=41.07 Aligned_cols=77 Identities=19% Similarity=0.349 Sum_probs=48.1
Q ss_pred CCeEEEEECCCCCEEEEEEc---CCC-----eEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc-cccccEEEEEEc
Q 001935 370 SPISALCFDPSGTLLVTASV---YGN-----NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG-ITSATIQDICFS 440 (994)
Q Consensus 370 spIsaLaFSPdGtlLATAS~---dGt-----~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG-~t~a~I~sIaFS 440 (994)
..-+.+..+|+|.+-++... .+. .-+||.+.|. | ++.++..+ .. .-+.|+||
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~------g-----------~~~~l~~~~~~--~~NGla~S 171 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD------G-----------GVVRLLDDDLT--IPNGLAFS 171 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC------C-----------CEEEeecCcEE--ecCceEEC
Confidence 34567899999999887665 111 1256766542 2 22233333 22 23679999
Q ss_pred cCCCEEEEE-eCCCeEEEEecCCCCC
Q 001935 441 HYSQWIAIV-SSKGTCHVFVLSPFGG 465 (994)
Q Consensus 441 pDg~~LAsg-S~dGTVhIw~I~~~gg 465 (994)
||++.|..+ |..+.||-|++.+..+
T Consensus 172 pDg~tly~aDT~~~~i~r~~~d~~~g 197 (307)
T COG3386 172 PDGKTLYVADTPANRIHRYDLDPATG 197 (307)
T ss_pred CCCCEEEEEeCCCCeEEEEecCcccC
Confidence 999766555 4458899999886444
No 351
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.88 E-value=3.5 Score=53.01 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=51.1
Q ss_pred EEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-cccEEEEEEccCCCEEEEEeCCC
Q 001935 375 LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-SATIQDICFSHYSQWIAIVSSKG 453 (994)
Q Consensus 375 LaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t-~a~I~sIaFSpDg~~LAsgS~dG 453 (994)
++---.+..+|.++.+|+ +-.+|.. | -|..+++|.. ..+|.+++|+.||+.++.|-.+|
T Consensus 93 ~s~a~~~~~ivi~Ts~gh-vl~~d~~--------~-----------nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G 152 (1206)
T KOG2079|consen 93 ISSAIVVVPIVIGTSHGH-VLLSDMT--------G-----------NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDG 152 (1206)
T ss_pred eeeeeeeeeEEEEcCchh-hhhhhhh--------c-----------ccchhhcCCccCCcceeeEecCCCceeccccCCC
Confidence 333345678888888777 5666653 1 1222334432 34799999999999999999999
Q ss_pred eEEEEecCCCCCC
Q 001935 454 TCHVFVLSPFGGD 466 (994)
Q Consensus 454 TVhIw~I~~~gg~ 466 (994)
-|.+|++...+.-
T Consensus 153 ~V~v~D~~~~k~l 165 (1206)
T KOG2079|consen 153 HVTVWDMHRAKIL 165 (1206)
T ss_pred cEEEEEccCCcce
Confidence 9999999874433
No 352
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=74.87 E-value=13 Score=42.77 Aligned_cols=111 Identities=11% Similarity=0.139 Sum_probs=68.7
Q ss_pred CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCC-------------------CccccC--
Q 001935 358 TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN-------------------HKYDWN-- 416 (994)
Q Consensus 358 s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~-------------------~~~~~~-- 416 (994)
.-..+....+|..+|+++-|+-.-+++++++.| +. -.|..... .++.|. ....|.
T Consensus 103 km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~d-k~-~~~hc~e~--~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt 178 (404)
T KOG1409|consen 103 KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKD-KQ-FAWHCTES--GNRLGGYNFETPASALQFDALYAFVGDHSGQIT 178 (404)
T ss_pred hcchhhhhhhhhcceeeEEecCCceeEEEeccc-cc-eEEEeecc--CCcccceEeeccCCCCceeeEEEEecccccceE
Confidence 334455667888899999998888888888874 32 24433211 000000 000000
Q ss_pred ------CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCc-ccccccC
Q 001935 417 ------SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDS-GFQTLSS 474 (994)
Q Consensus 417 ------~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~-~~~~H~s 474 (994)
.....++++ +|++ +.|.+++|.+-.+.|.++..|..+.+|+|.-..+.. .++.|+.
T Consensus 179 ~lr~~~~~~~~i~~~-~~h~-~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~ 241 (404)
T KOG1409|consen 179 MLKLEQNGCQLITTF-NGHT-GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND 241 (404)
T ss_pred EEEEeecCCceEEEE-cCcc-cceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchh
Confidence 011233444 4544 569999999999999999999999999997666543 3455654
No 353
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=74.14 E-value=1.1e+02 Score=35.00 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=37.5
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCc
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLE 222 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVgl~~~I~IwDa~Tle 222 (994)
..+-+||+.+++..........+....++| +.||...+..|++++..+.+
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~ 74 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ 74 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSE
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCC
Confidence 679999999987654333345677778877 68998999999999987763
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=74.05 E-value=45 Score=38.88 Aligned_cols=94 Identities=17% Similarity=0.245 Sum_probs=65.5
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC--CCeEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 001935 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~d--Gt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~ 424 (994)
.+..|.+.|..+.+.+..+.--..| ..++|+|+|+.+..+... ...+-++|... + ..+.+
T Consensus 94 ~~~~v~vid~~~~~~~~~~~vG~~P-~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-------~----------~~~~~ 155 (381)
T COG3391 94 DSNTVSVIDTATNTVLGSIPVGLGP-VGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-------N----------KVTAT 155 (381)
T ss_pred CCCeEEEEcCcccceeeEeeeccCC-ceEEECCCCCEEEEEecccCCceEEEEeCCC-------C----------eEEEE
Confidence 4678999998877766555433333 469999999888877772 45577777542 1 34444
Q ss_pred EecccccccEEEEEEccCCCEEEEEe-CCCeEEEEecC
Q 001935 425 LHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (994)
Q Consensus 425 L~RG~t~a~I~sIaFSpDg~~LAsgS-~dGTVhIw~I~ 461 (994)
...|... ..++|+|||+.+.+.. .++++.+++..
T Consensus 156 ~~vG~~P---~~~a~~p~g~~vyv~~~~~~~v~vi~~~ 190 (381)
T COG3391 156 IPVGNTP---TGVAVDPDGNKVYVTNSDDNTVSVIDTS 190 (381)
T ss_pred EecCCCc---ceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence 5556433 7899999999766655 78899998843
No 355
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=73.99 E-value=5.1 Score=50.36 Aligned_cols=59 Identities=24% Similarity=0.311 Sum_probs=50.8
Q ss_pred cccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCC
Q 001935 341 AGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 341 ~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (994)
.++.+-.-|.+.||...+.+.-..-..|+.||.-|.|||+|+.|.|+..-|- +.+|+..
T Consensus 73 vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~-v~lwr~d 131 (1416)
T KOG3617|consen 73 VLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGS-VHLWRYD 131 (1416)
T ss_pred HHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCce-eEEEEee
Confidence 4456677899999999988877777789999999999999999999999664 8999875
No 356
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.92 E-value=7.8 Score=50.06 Aligned_cols=100 Identities=16% Similarity=0.227 Sum_probs=56.9
Q ss_pred ccCCCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 344 DMDNAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~-~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
-+..-|.|-..|.... ....+=.--+.||++++|+.||++|+.|=.+|. |.|||+.. + ..-++
T Consensus 104 i~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~-------~--------k~l~~ 167 (1206)
T KOG2079|consen 104 IGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHR-------A--------KILKV 167 (1206)
T ss_pred EEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccC-------C--------cceee
Confidence 3445566666666542 111111123579999999999999988777676 99999864 1 01122
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
.........+.|...-++..+ .+.++-..|. +|.+.-
T Consensus 168 i~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 168 ITEHGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred eeecCCccceEEEEEEeCCCc-EEEEccCCCc--eEEEEe
Confidence 222222223456655566444 5555555554 676643
No 357
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=73.85 E-value=36 Score=40.75 Aligned_cols=45 Identities=13% Similarity=0.246 Sum_probs=30.9
Q ss_pred CCEEEEEECCCCeEEEEEeCCC---cEEEEEecC------CeEEEEeCCeEEEE
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRS---SVCMVRCSP------RIVAVGLATQIYCF 216 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S---~V~sV~~S~------~iLAVgl~~~I~Iw 216 (994)
.+++.|||+++++.+.+|.+.. .++.|+|-. .++.+++..+|+.|
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEE
Confidence 5899999999999999998863 568888843 25666777776666
No 358
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=72.56 E-value=2.2 Score=53.65 Aligned_cols=99 Identities=13% Similarity=0.145 Sum_probs=78.1
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC-eEEEEeCCCCcccCCCCCCccccCCcceE
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN-NINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt-~IrVwdi~p~~~~~~sG~~~~~~~~s~~~ 421 (994)
+-|...|.|++|++.+|........|.++|+-|.=+.||.++.|.|.-.. ..-+|+.... + ..
T Consensus 1117 ~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~------~----------~~ 1180 (1516)
T KOG1832|consen 1117 AVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST------G----------GP 1180 (1516)
T ss_pred EeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc------c----------Cc
Confidence 45678999999999999999999999999999999999998888775333 4568987421 2 12
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 422 l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
.+.|+ + -.++-||...++-+.|+....+|||++.+.
T Consensus 1181 ~Hsf~-e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1181 RHSFD-E-----DKAVKFSNSLQFRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred ccccc-c-----cceeehhhhHHHHHhcccccceEEEecccC
Confidence 33342 2 246889998888899999999999999774
No 359
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=71.68 E-value=1.9e+02 Score=33.12 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=55.3
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
.|.|..+|. .+..+..+..|-.-=+.|||||||+.|..+......|.-|++.+. .|.. .. +..+.+..
T Consensus 142 ~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~-----~g~~----~~--~~~~~~~~ 209 (307)
T COG3386 142 TGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPA-----TGPI----GG--RRGFVDFD 209 (307)
T ss_pred cceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcc-----cCcc----CC--cceEEEcc
Confidence 344444444 455666666654444679999999999989887676777776431 0110 00 11111111
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCC-eEEEEecC
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSKG-TCHVFVLS 461 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~dG-TVhIw~I~ 461 (994)
.....--.++..-||.+-+++-..| -|++|+-+
T Consensus 210 -~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 210 -EEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred -CCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 1112234466667777664444443 67777743
No 360
>PRK02888 nitrous-oxide reductase; Validated
Probab=71.28 E-value=30 Score=43.16 Aligned_cols=106 Identities=9% Similarity=0.068 Sum_probs=70.1
Q ss_pred CCeEEEEECCC-----CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 348 AGIVVVKDFVT-----RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 348 dG~V~VwDl~s-----~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
++.|.|.|..+ .+.+..+.--.+| .-|++||||++|+.++....++-|+|+...-.. -.+. .+... ...
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsP-HGV~vSPDGkylyVanklS~tVSVIDv~k~k~~-~~~~--~~~~~--~vv 368 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNP-HGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL-FDGK--IKPRD--AVV 368 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCc-cceEECCCCCEEEEeCCCCCcEEEEEChhhhhh-hhcc--CCccc--eEE
Confidence 56799999998 4566666644333 568999999999999987778999998642000 0000 00000 112
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
-+..-|.. -...+|.++|.-..+--.|..|-.|++..
T Consensus 369 aevevGlG---PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 369 AEPELGLG---PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EeeccCCC---cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22222432 24589999999888888899999999876
No 361
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=70.58 E-value=8.6 Score=29.65 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=20.8
Q ss_pred ccEEEEEEccCCCEEEEEeCC---CeEEEE
Q 001935 432 ATIQDICFSHYSQWIAIVSSK---GTCHVF 458 (994)
Q Consensus 432 a~I~sIaFSpDg~~LAsgS~d---GTVhIw 458 (994)
......+|||||++|+-++.+ |..+||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 356789999999999988877 567776
No 362
>PRK13616 lipoprotein LpqB; Provisional
Probab=69.16 E-value=22 Score=44.13 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=60.2
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
.+.+.+.++..+.... .....|..+.|||||+.||-... |+ |.|=-+.+. ..|. . ......+|.-
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~-g~-v~Va~Vvr~----~~G~--~----~l~~~~~l~~ 493 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG-GK-VYLAVVEQT----EDGQ--Y----ALTNPREVGP 493 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC-CE-EEEEEEEeC----CCCc--e----eecccEEeec
Confidence 3455555665554322 33567999999999999988764 54 555333321 0121 0 0011122322
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
+.. ..+.+++|..|+. |+++..++...||.++..|.
T Consensus 494 ~l~-~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 494 GLG-DTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred ccC-CccccceEecCCE-EEEEecCCCCceEEEecCCc
Confidence 322 2357899999998 55777777778999887654
No 363
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=69.05 E-value=14 Score=28.40 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=21.2
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCC--CeEEEE
Q 001935 368 HTSPISALCFDPSGTLLVTASVYG--NNINIF 397 (994)
Q Consensus 368 HtspIsaLaFSPdGtlLATAS~dG--t~IrVw 397 (994)
....-..-+|||||+.|+-++..+ ....||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 444567789999999999888765 445555
No 364
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=68.69 E-value=11 Score=43.73 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=43.6
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecCC---eE-EEEe-CCeEEEEECCCCceeEEEee
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPR---IV-AVGL-ATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~sV~~S~~---iL-AVgl-~~~I~IwDa~Tle~l~tL~t 229 (994)
+.|=+||+++++.+..+....++.+|..+.+ +| ++.. ++.|.+||+.|++.+.++..
T Consensus 269 teVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 269 TEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred eEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 7888899999999999998888888888762 33 4443 45799999999999988874
No 365
>PF12429 DUF3676: Protein of unknown function (DUF3676) ; InterPro: IPR022144 This domain family is found in eukaryotes, and is approximately 230 amino acids in length.
Probab=67.97 E-value=6.1 Score=41.73 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccCccceeeccCcc--ccccccceeccCcccCCccCCCccceeeccceeeeeec
Q 001935 871 ENDNPHVNNHIPNGLPSLESNLPSAGRDDTIVAVSMLGAD--YYDSHMGIIMEDRALPLLSCPVNLGVSLREEHCKIVEQ 948 (994)
Q Consensus 871 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (994)
+.....+|.+++-..||-...-++.++-.+-..+-.++.- +--.|..-... -+--+.+.+-.-++-.-..+++
T Consensus 28 eqeE~~v~d~vpAA~sST~~aGSSV~EpAiA~esA~nS~~edNaQlsegetsq-----QaT~~e~~~smQrdSdvQ~qd~ 102 (230)
T PF12429_consen 28 EQEEESVDDPVPAASSSTVAAGSSVPEPAIAAESAENSRPEDNAQLSEGETSQ-----QATLNEDNKSMQRDSDVQPQDP 102 (230)
T ss_pred hhcccccccccccCCccccccccccCchhHhhhhhhccCccccccccCCcccc-----cccccccchhhhcccccCccCC
Confidence 3444667777777777766666666666555444444332 11111110000 0111112221112222222222
Q ss_pred CCcccceeeeeccCCCCCCcccccccccccCcccccccc
Q 001935 949 NGLCKSTDVVNDDINGGNSHCESKKLEEDAEDDEMLGGM 987 (994)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 987 (994)
...+|||| +|+=-++-| -+.++|||+|+-+|+-||-
T Consensus 103 -qs~e~Te~-~DvE~sses-~d~e~PeEeg~and~Sg~s 138 (230)
T PF12429_consen 103 -QSEELTEV-TDVEGSSES-NDTEQPEEEGEANDRSGGS 138 (230)
T ss_pred -cchhcccc-ccccccccc-ccccCcchhccccCCCCCc
Confidence 35688887 887444444 4899999999999999984
No 366
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=66.71 E-value=12 Score=30.81 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=25.2
Q ss_pred EEEEEEccCCC---EEEEEeCCCeEEEEecCC
Q 001935 434 IQDICFSHYSQ---WIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 434 I~sIaFSpDg~---~LAsgS~dGTVhIw~I~~ 462 (994)
|.++.|||+.. .|+.+-..|-|||+++..
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 78999998654 899999999999999874
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=66.64 E-value=25 Score=40.84 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=40.5
Q ss_pred CeEEEEECCCCCEEEEE-EcCCC---eEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 001935 371 PISALCFDPSGTLLVTA-SVYGN---NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (994)
Q Consensus 371 pIsaLaFSPdGtlLATA-S~dGt---~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (994)
-+..+++||||++||-+ +..|. .|+|+|+.. | +.+-.. +....-..++|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-------g----------~~l~d~---i~~~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-------G----------KFLPDG---IENPKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-------T----------EEEEEE---EEEEESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-------C----------cCcCCc---ccccccceEEEeCCCCEE
Confidence 44578999999998855 55443 599999964 3 232211 111222349999999888
Q ss_pred EEEeCCC
Q 001935 447 AIVSSKG 453 (994)
Q Consensus 447 AsgS~dG 453 (994)
.....+.
T Consensus 185 ~y~~~~~ 191 (414)
T PF02897_consen 185 FYTRFDE 191 (414)
T ss_dssp EEEECST
T ss_pred EEEEeCc
Confidence 7776554
No 368
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=66.22 E-value=4.3e+02 Score=35.00 Aligned_cols=97 Identities=11% Similarity=0.115 Sum_probs=67.1
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
-...|++|+..+.+.+..=..|..++.+|...-.|..+|.|+.-+. |.+-.-... -| .+++.-
T Consensus 846 In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~-----eg-----------~f~evA 908 (1096)
T KOG1897|consen 846 INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGD-----EG-----------NFEEVA 908 (1096)
T ss_pred cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEecc-----CC-----------ceEEee
Confidence 3457999999998777776789999999999999999999987443 544433221 02 356666
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
|-..+.++..+.+=.|.. .+.+-..|.+.+-..+
T Consensus 909 rD~~p~Wmtaveil~~d~-ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 909 RDYNPNWMTAVEILDDDT-YLGAENSGNLFTVRKD 942 (1096)
T ss_pred hhhCccceeeEEEecCce-EEeecccccEEEEEec
Confidence 655566778888775544 4456667777665554
No 369
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=65.68 E-value=14 Score=40.64 Aligned_cols=105 Identities=13% Similarity=0.114 Sum_probs=65.2
Q ss_pred ccCCCCeEEEEECCCCcEE-EEeccCCCCeEE-EEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceE
Q 001935 344 DMDNAGIVVVKDFVTRAII-SQFKAHTSPISA-LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~~i-~~~~aHtspIsa-LaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~ 421 (994)
-+..+|.|.+|...--... -.+..-..+|.+ +.--.++.+..++..+|. ||-|+++|+ ++
T Consensus 75 vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~-----------------k~ 136 (238)
T KOG2444|consen 75 VGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPN-----------------KV 136 (238)
T ss_pred eecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccC-----------------ce
Confidence 3567899999887621111 111111234433 333345567777777665 999999874 23
Q ss_pred EEEEeccccc-ccEEEEEEccCCCEEEEE--eCCCeEEEEecCCCCCCcc
Q 001935 422 LYKLHRGITS-ATIQDICFSHYSQWIAIV--SSKGTCHVFVLSPFGGDSG 468 (994)
Q Consensus 422 l~~L~RG~t~-a~I~sIaFSpDg~~LAsg--S~dGTVhIw~I~~~gg~~~ 468 (994)
+- ++|.++ ..+..+.-+.-+++|+++ |.+.+++.|++.+......
T Consensus 137 ~g--~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~~ 184 (238)
T KOG2444|consen 137 LG--YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDESP 184 (238)
T ss_pred ee--eeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhccCc
Confidence 22 234454 566667777778888888 8899999999887655443
No 370
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=65.40 E-value=42 Score=39.65 Aligned_cols=83 Identities=18% Similarity=0.311 Sum_probs=54.1
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe------cccccccE
Q 001935 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH------RGITSATI 434 (994)
Q Consensus 361 ~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~------RG~t~a~I 434 (994)
....+....++|++|+.|.=| ++|.|.++|+ +-|.|++ |- ..+|.-. .......|
T Consensus 78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~-l~viD~R--------GP---------avI~~~~i~~~~~~~~~~~~v 138 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESGS-LVVIDLR--------GP---------AVIYNENIRESFLSKSSSSYV 138 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS-EEEEEETTSE-EEEEETT--------TT---------EEEEEEEGGG--T-SS----E
T ss_pred chhheeccCCcEeEEecCCCc-EEEEEecCCc-EEEEECC--------CC---------eEEeeccccccccccccccCe
Confidence 344556668899999998554 8999998775 8899985 21 3444421 11233468
Q ss_pred EEEEEcc-----CC---CEEEEEeCCCeEEEEecCC
Q 001935 435 QDICFSH-----YS---QWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 435 ~sIaFSp-----Dg---~~LAsgS~dGTVhIw~I~~ 462 (994)
.+|.|+- |+ -.|.+|++.|++.+|+|-|
T Consensus 139 t~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 139 TSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp EEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred eEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence 8899982 33 5889999999999999976
No 371
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=64.78 E-value=7.2 Score=48.33 Aligned_cols=94 Identities=15% Similarity=0.291 Sum_probs=66.3
Q ss_pred ccCCCCeEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceE
Q 001935 344 DMDNAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~~i~~~~--aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~ 421 (994)
+.+.+|.|.||-+-.+.-...+. -..+-|.+|+|+.||+.++.+=+||. |.|=.+. |. .
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGa-vIVGsvd--------GN----------R 148 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGA-VIVGSVD--------GN----------R 148 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCC-EEEEeec--------cc----------e
Confidence 55789999999998775322211 24567899999999999999888777 4444432 20 1
Q ss_pred EE--EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 001935 422 LY--KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 422 l~--~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I 460 (994)
++ +| .|.. ...+.||+|.+.+..+-..|.+|||+-
T Consensus 149 IwgKeL-kg~~---l~hv~ws~D~~~~Lf~~ange~hlydn 185 (1189)
T KOG2041|consen 149 IWGKEL-KGQL---LAHVLWSEDLEQALFKKANGETHLYDN 185 (1189)
T ss_pred ecchhc-chhe---ccceeecccHHHHHhhhcCCcEEEecc
Confidence 11 12 2222 236889999999999999999999985
No 372
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=62.64 E-value=73 Score=40.01 Aligned_cols=100 Identities=14% Similarity=0.203 Sum_probs=65.8
Q ss_pred CCeEEEEECCCCcEE--EEeccCCCCeEEEEE--CCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 001935 348 AGIVVVKDFVTRAII--SQFKAHTSPISALCF--DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (994)
Q Consensus 348 dG~V~VwDl~s~~~i--~~~~aHtspIsaLaF--SPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~ 423 (994)
...+.|||...+..- ..| ....+|..|.| .|||+.+.+.+- ++.|.+|.-.+.-..+ . .++...+.
T Consensus 50 ~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf-~~~v~l~~Q~R~dy~~--~------~p~w~~i~ 119 (631)
T PF12234_consen 50 RSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGF-PHHVLLYTQLRYDYTN--K------GPSWAPIR 119 (631)
T ss_pred CCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEc-CcEEEEEEccchhhhc--C------CcccceeE
Confidence 346999999987632 223 44678998877 599999888888 5668888643211111 0 11223444
Q ss_pred EE-ecccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 001935 424 KL-HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 424 ~L-~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
++ -+.+|...|.+..|-+||..++.++ ..++||+
T Consensus 120 ~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 120 KIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred EEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 43 2567777899999999998776653 3477776
No 373
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=62.37 E-value=35 Score=38.98 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=40.2
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 001935 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (994)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsg 449 (994)
..|..+..++||+++|.++. |..+.-|+- |. ...+.+. |. +...|++|.|+||+...+++
T Consensus 145 gs~~~~~r~~dG~~vavs~~-G~~~~s~~~---------G~-------~~w~~~~--r~-~~~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSR-GNFYSSWDP---------GQ-------TTWQPHN--RN-SSRRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp --EEEEEE-TTS-EEEEETT-SSEEEEE-T---------T--------SS-EEEE-----SSS-EEEEEE-TTS-EEEEE
T ss_pred ceeEeEEECCCCcEEEEECc-ccEEEEecC---------CC-------ccceEEc--cC-ccceehhceecCCCCEEEEe
Confidence 56888999999999987766 998777773 31 1123333 43 34679999999998766654
Q ss_pred eCCCeEEEEe
Q 001935 450 SSKGTCHVFV 459 (994)
Q Consensus 450 S~dGTVhIw~ 459 (994)
..|-++.=+
T Consensus 205 -~Gg~~~~s~ 213 (302)
T PF14870_consen 205 -RGGQIQFSD 213 (302)
T ss_dssp -TTTEEEEEE
T ss_pred -CCcEEEEcc
Confidence 666665433
No 374
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=62.29 E-value=1e+02 Score=35.90 Aligned_cols=93 Identities=12% Similarity=0.199 Sum_probs=63.2
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEE--
Q 001935 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK-- 424 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~-- 424 (994)
.++.|.+.|..+++++..+..-..| ..++|+|+|+.+..+......|-+++.... .+.+
T Consensus 138 ~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~------------------~v~~~~ 198 (381)
T COG3391 138 GNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN------------------SVVRGS 198 (381)
T ss_pred CCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc------------------ceeccc
Confidence 4678999999999988887766667 889999999977777755666899996421 1111
Q ss_pred ----EecccccccEEEEEEccCCCEEEEEeCC---CeEEEEecC
Q 001935 425 ----LHRGITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLS 461 (994)
Q Consensus 425 ----L~RG~t~a~I~sIaFSpDg~~LAsgS~d---GTVhIw~I~ 461 (994)
...+. .-+.++++|||+++-+.-.. +++-+.+..
T Consensus 199 ~~~~~~~~~---~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~ 239 (381)
T COG3391 199 VGSLVGVGT---GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA 239 (381)
T ss_pred cccccccCC---CCceEEECCCCCEEEEEeccCCCceEEEEeCC
Confidence 11111 23679999999976655444 355555443
No 375
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=62.07 E-value=88 Score=34.44 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=47.9
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 001935 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (994)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS 450 (994)
.+..-+|+++|.+.+.... ....+++.-... |. .....+........|.++.+||||..+|...
T Consensus 67 ~l~~PS~d~~g~~W~v~~~-~~~~~~~~~~~~------g~---------~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDG-SGGVRVVRDSAS------GT---------GEPVEVDWPGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred ccccccccCCCCEEEEEcC-CCceEEEEecCC------Cc---------ceeEEecccccCCceEEEEECCCCcEEEEEE
Confidence 6778899999888776664 444666642110 11 0112222111111799999999999999988
Q ss_pred C---CCeEEEEecCCC
Q 001935 451 S---KGTCHVFVLSPF 463 (994)
Q Consensus 451 ~---dGTVhIw~I~~~ 463 (994)
. ++.|.|=.|...
T Consensus 131 ~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 131 EDGGGGRVYVAGVVRD 146 (253)
T ss_pred ecCCCCeEEEEEEEeC
Confidence 3 467777776543
No 376
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=61.81 E-value=3.6e+02 Score=32.61 Aligned_cols=57 Identities=14% Similarity=-0.037 Sum_probs=36.9
Q ss_pred CEEEEEECCCCeEEEEEeCCCc-------E--EEEEecC-CeEEE-EeCCeEEEEECCCCceeEEEee
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSS-------V--CMVRCSP-RIVAV-GLATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~-------V--~sV~~S~-~iLAV-gl~~~I~IwDa~Tle~l~tL~t 229 (994)
+.|.-.|.++|+.+-.++.... + ..+.... ..|.+ ..++.|+.+|+.|++.+.....
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 5677778888887776654322 1 1223323 44444 4567899999999998877653
No 377
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=59.74 E-value=20 Score=29.54 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=24.0
Q ss_pred CeEEEEECCCCC---EEEEEEcCCCeEEEEeCCC
Q 001935 371 PISALCFDPSGT---LLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 371 pIsaLaFSPdGt---lLATAS~dGt~IrVwdi~p 401 (994)
.|.++.|||+.. +||-+-..|+ |+|+|+..
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence 578999998554 8988877776 89999863
No 378
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=57.04 E-value=1.8e+02 Score=32.10 Aligned_cols=85 Identities=20% Similarity=0.243 Sum_probs=48.9
Q ss_pred CeEEEEECCCCCEEEEEEcC--CCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 001935 371 PISALCFDPSGTLLVTASVY--GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (994)
Q Consensus 371 pIsaLaFSPdGtlLATAS~d--Gt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs 448 (994)
+|.+|.+||||+.+|-...+ +..|.|=-|.... .|. ........++... -...+.+++|.+|+..++.
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~----~g~-----~~~l~~~~~~~~~-~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG----DGV-----PRRLTGPRRVAPP-LLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC----CCC-----cceeccceEeccc-ccCcceeeeecCCCEEEEE
Confidence 89999999999999987733 3445555554321 110 0000011122111 1236899999999988877
Q ss_pred EeCCCeEEEEe-cCCCCCC
Q 001935 449 VSSKGTCHVFV-LSPFGGD 466 (994)
Q Consensus 449 gS~dGTVhIw~-I~~~gg~ 466 (994)
+...+.- +|. +...|+.
T Consensus 183 ~~~~~~~-~~~~v~~dG~~ 200 (253)
T PF10647_consen 183 GRSAGGP-VVRLVSVDGGP 200 (253)
T ss_pred eCCCCCc-eeEEEEccCCc
Confidence 7666652 333 5555543
No 379
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=56.97 E-value=2.6e+02 Score=35.77 Aligned_cols=74 Identities=14% Similarity=0.188 Sum_probs=49.9
Q ss_pred CeEEEEEC--CCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC-----
Q 001935 371 PISALCFD--PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----- 443 (994)
Q Consensus 371 pIsaLaFS--PdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg----- 443 (994)
.++.|++. ...+++|.++. .+.|-||-..... . ...+..... +...|-+|+|-++.
T Consensus 165 SaWGLdIh~~~~~rlIAVSsN-s~~VTVFaf~l~~-----~--------r~~~~~s~~---~~hNIP~VSFl~~~~d~~G 227 (717)
T PF08728_consen 165 SAWGLDIHDYKKSRLIAVSSN-SQEVTVFAFALVD-----E--------RFYHVPSHQ---HSHNIPNVSFLDDDLDPNG 227 (717)
T ss_pred ceeEEEEEecCcceEEEEecC-CceEEEEEEeccc-----c--------ccccccccc---cccCCCeeEeecCCCCCcc
Confidence 67889997 77788876666 6779999764310 0 000111111 23468999998765
Q ss_pred -CEEEEEeCCCeEEEEecC
Q 001935 444 -QWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 444 -~~LAsgS~dGTVhIw~I~ 461 (994)
.+|++++-.|.+-+|++.
T Consensus 228 ~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 228 HVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ceEEEEEeccCcEEEEEEE
Confidence 299999999999999884
No 380
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=56.70 E-value=66 Score=38.42 Aligned_cols=40 Identities=15% Similarity=0.346 Sum_probs=32.9
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCC
Q 001935 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 361 ~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (994)
....|......+.+|+.+|+|++.|+++.-|+ |-++|+..
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~ 338 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGR-VLLIDVAR 338 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCc-EEEEECCC
Confidence 44556666677899999999999999988788 88999864
No 381
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=54.92 E-value=2.1e+02 Score=28.34 Aligned_cols=87 Identities=11% Similarity=0.178 Sum_probs=55.1
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
..++.|..|+||+-. ..+..+.-+ +.|..|+-... ..+|.|-..|+ |-||+-. ..+
T Consensus 19 lvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGT-VGvY~~~-------------------~Rl 74 (111)
T PF14783_consen 19 LVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGT-VGVYDRS-------------------QRL 74 (111)
T ss_pred EEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCE-EEEEeCc-------------------cee
Confidence 356789999999865 567777765 46677776666 45777888787 8888742 233
Q ss_pred EEEecccccccEEEEEEccCC----CEEEEEeCCCeEE
Q 001935 423 YKLHRGITSATIQDICFSHYS----QWIAIVSSKGTCH 456 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg----~~LAsgS~dGTVh 456 (994)
.+.+ ....+.++++..-. .-|++|=.+|.|-
T Consensus 75 WRiK---SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK---SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec---cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3332 22235666655433 2577776777653
No 382
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=54.03 E-value=66 Score=32.80 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=39.7
Q ss_pred CEEEEEECC--------CCeEEEEEeCCCcEEEEEec-------CCeEEEEeCCeEEEEECCCCceeE
Q 001935 173 TAVRFYSFQ--------SHCYEHVLRFRSSVCMVRCS-------PRIVAVGLATQIYCFDALTLENKF 225 (994)
Q Consensus 173 ~tVrLWDlk--------tge~V~tL~f~S~V~sV~~S-------~~iLAVgl~~~I~IwDa~Tle~l~ 225 (994)
++|-|++.. ....+..|.+...|.+|+.- ++.|++|....|-+||+..-..++
T Consensus 20 gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~F 87 (136)
T PF14781_consen 20 GKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLF 87 (136)
T ss_pred CEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhh
Confidence 467777654 44567888898888888553 369999999999999998755443
No 383
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=53.65 E-value=4.8e+02 Score=31.54 Aligned_cols=57 Identities=11% Similarity=0.057 Sum_probs=39.4
Q ss_pred CEEEEEECCCCeEEEEEeCCCcE---EEE----EecCCeEEEEe----------CCeEEEEECCCCceeEEEee
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSV---CMV----RCSPRIVAVGL----------ATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V---~sV----~~S~~iLAVgl----------~~~I~IwDa~Tle~l~tL~t 229 (994)
+.|.-+|.++|+.+-..+....+ +.+ .+...+++++. .+.|+.+|+.|++.+.....
T Consensus 120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 57888899999988877654431 112 22235565653 45799999999999887765
No 384
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=49.79 E-value=13 Score=47.33 Aligned_cols=107 Identities=13% Similarity=0.197 Sum_probs=61.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEE-----------ECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccc
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALC-----------FDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aHtspIsaLa-----------FSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~ 414 (994)
..+|.|++.....-. ...|+.|...+..++ .||||+.+|+|..||. ++.|++.-. |.
T Consensus 202 ~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiyi~------g~---- 269 (1283)
T KOG1916|consen 202 LKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIYIT------GK---- 269 (1283)
T ss_pred cCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeeeee------cc----
Confidence 456777766555422 256777866555444 6999999999999887 788876421 21
Q ss_pred cCCcceEEEEEecccccccEEEEEEccC-------CC--EEEEEeCCCe-EEEEecCCCCCCc
Q 001935 415 WNSSHVHLYKLHRGITSATIQDICFSHY-------SQ--WIAIVSSKGT-CHVFVLSPFGGDS 467 (994)
Q Consensus 415 ~~~s~~~l~~L~RG~t~a~I~sIaFSpD-------g~--~LAsgS~dGT-VhIw~I~~~gg~~ 467 (994)
-.++++++..-....-.|..+ |... +. ++.++++-++ +++|.-.++.+..
T Consensus 270 --~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll 329 (1283)
T KOG1916|consen 270 --IVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLL 329 (1283)
T ss_pred --ccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhhh
Confidence 112344433221111123333 3221 22 4455555554 8899988888873
No 385
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=49.59 E-value=1.6e+02 Score=34.86 Aligned_cols=100 Identities=19% Similarity=0.177 Sum_probs=46.1
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC---------------CCeEEEEeCCCCcccCCCCC
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY---------------GNNINIFRIMPSCMRSGSGN 410 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~d---------------Gt~IrVwdi~p~~~~~~sG~ 410 (994)
+.+..|.=+|..+++.... .+..+.+-+--|+||+|+|-=+.+ +.-|.||++.. +
T Consensus 261 ~~~~~i~~~d~~t~~~~~~--~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~-------~- 330 (386)
T PF14583_consen 261 GQDFWIAGYDPDTGERRRL--MEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA-------G- 330 (386)
T ss_dssp T--EEEEEE-TTT--EEEE--EEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTT-------T-
T ss_pred CCceEEEeeCCCCCCceEE--EeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecccc-------C-
Confidence 4455677778887754321 222345667789999998743321 11355666642 1
Q ss_pred CccccCCcceEEEE------EecccccccEEEEEEccCCCEEEEEeC-CCeEEEEecCC
Q 001935 411 HKYDWNSSHVHLYK------LHRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVLSP 462 (994)
Q Consensus 411 ~~~~~~~s~~~l~~------L~RG~t~a~I~sIaFSpDg~~LAsgS~-dGTVhIw~I~~ 462 (994)
....|.+ ...|.....=-...||||++||.-.|+ .|..+||.++-
T Consensus 331 -------~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 331 -------RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp -------EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred -------ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeC
Confidence 0011111 112211111135899999999987665 57889998754
No 386
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=48.50 E-value=36 Score=41.70 Aligned_cols=76 Identities=25% Similarity=0.399 Sum_probs=41.2
Q ss_pred EEEECCCCCEEEEEEcCCCeEEEEeCCCCcc---c-CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 001935 374 ALCFDPSGTLLVTASVYGNNINIFRIMPSCM---R-SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (994)
Q Consensus 374 aLaFSPdGtlLATAS~dGt~IrVwdi~p~~~---~-~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsg 449 (994)
-|+|+|+|+|++.-+..+...+|+-+.+.-. . ...|.--..-......+..|..+...+.|+.++|+||++.|.+.
T Consensus 440 NL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 440 NLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred ceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceECCCCCEEEEE
Confidence 3899999998876555443332222111000 0 00000000000111345666677788899999999999988764
No 387
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=47.72 E-value=2.6e+02 Score=28.68 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=43.2
Q ss_pred CCCEEEEEECCCCeEEEEEeCCCcEEEEEe------cCCeEEEEeCCeEEEEECCCCceeEEEe
Q 001935 171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRC------SPRIVAVGLATQIYCFDALTLENKFSVL 228 (994)
Q Consensus 171 sp~tVrLWDlktge~V~tL~f~S~V~sV~~------S~~iLAVgl~~~I~IwDa~Tle~l~tL~ 228 (994)
+++.+..||.....-+---+.+..|.+|.+ ...+++||..-.|.-||..-.|..+++.
T Consensus 71 t~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 71 TQTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred ccceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 457899999998876654456677777766 2357778888889999988777766654
No 388
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=45.42 E-value=88 Score=29.35 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=34.6
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCC
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (994)
-|.|.-||...-+. ...+ -.--+-|+++|++++|..|+.-++.|+||..+
T Consensus 35 ~~~Vvyyd~~~~~~--va~g-~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 35 WGNVVYYDGKEVKV--VASG-FSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CceEEEEeCCEeEE--eecc-CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 35677777653222 1222 12335689999999999999888899999864
No 389
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.88 E-value=82 Score=38.57 Aligned_cols=102 Identities=18% Similarity=0.254 Sum_probs=62.2
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCE--EEEEE----cCCCeEEEEeCCCCcccCCCCCCccccCC
Q 001935 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTL--LVTAS----VYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtl--LATAS----~dGt~IrVwdi~p~~~~~~sG~~~~~~~~ 417 (994)
++.....+.--|++.|+++..++-|.. |+-+.|.|+++. |.+.+ .++. +||++.|.. . |. + .-
T Consensus 351 ~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n--~vfriDpRv--~--~~---~-kl 419 (644)
T KOG2395|consen 351 DGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDN--SVFRIDPRV--Q--GK---N-KL 419 (644)
T ss_pred CCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCC--ceEEecccc--c--Cc---c-ee
Confidence 455556677789999999999999977 888888888753 32111 1122 456665421 1 10 0 00
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 001935 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 418 s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I 460 (994)
.+..-+.+.|+. .-+|++-.-+ .+||+||.+|-|++|+-
T Consensus 420 ~~~q~kqy~~k~---nFsc~aTT~s-G~IvvgS~~GdIRLYdr 458 (644)
T KOG2395|consen 420 AVVQSKQYSTKN---NFSCFATTES-GYIVVGSLKGDIRLYDR 458 (644)
T ss_pred eeeecccccccc---ccceeeecCC-ceEEEeecCCcEEeehh
Confidence 011222333432 2456665544 58999999999999984
No 390
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=44.78 E-value=3.9e+02 Score=30.19 Aligned_cols=109 Identities=11% Similarity=0.155 Sum_probs=59.3
Q ss_pred CeEEEEECCCCcEEEEecc------CCCCeEEEEECCCC-----CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCC
Q 001935 349 GIVVVKDFVTRAIISQFKA------HTSPISALCFDPSG-----TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~a------HtspIsaLaFSPdG-----tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~ 417 (994)
-.+.+||+.+++++.++.- ..+-+..|.++... .+..-++..+.-|-|||+...-...-.. ......+
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~-~~~~~~p 112 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLH-NSFSPDP 112 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEET-CGCTTS-
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEec-CCcceec
Confidence 3688999999998777652 24678889998732 4666677656679999986520000000 0000000
Q ss_pred cceEE----EEEecccccccEEEEEEcc---CCCEEEEEeCCCeEEEEecCC
Q 001935 418 SHVHL----YKLHRGITSATIQDICFSH---YSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 418 s~~~l----~~L~RG~t~a~I~sIaFSp---Dg~~LAsgS~dGTVhIw~I~~ 462 (994)
..... ..+.+ ...|..++.+| |++||--....++ ++|.|+.
T Consensus 113 ~~~~~~i~g~~~~~---~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T 160 (287)
T PF03022_consen 113 DAGPFTIGGESFQW---PDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPT 160 (287)
T ss_dssp SSEEEEETTEEEEE---TTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEH
T ss_pred cccceeccCceEec---CCCccccccCCCCCCccEEEEEeCCCC-cEEEEEH
Confidence 00000 01111 11277788876 7888887777665 6777754
No 391
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=43.74 E-value=1.8e+02 Score=30.03 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=24.8
Q ss_pred cEEEEEEccCC------CEEEEEeCCCeEEEEecC
Q 001935 433 TIQDICFSHYS------QWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 433 ~I~sIaFSpDg------~~LAsgS~dGTVhIw~I~ 461 (994)
.|..++|||-| -.||+-+.+|.+.||.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68899999943 489999999999999854
No 392
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=43.25 E-value=3.1e+02 Score=33.21 Aligned_cols=108 Identities=15% Similarity=0.229 Sum_probs=53.9
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCC--CeEEEEE--CCCCCEEEEEEcCCC-eEEEEeCCCCcccCCCCCCccccCCcce
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAHTS--PISALCF--DPSGTLLVTASVYGN-NINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aHts--pIsaLaF--SPdGtlLATAS~dGt-~IrVwdi~p~~~~~~sG~~~~~~~~s~~ 420 (994)
.+-..+.|||+.+.+.+.+|.--.. -...|.| +|+-++=.++..-.. +.++|.... | .|.+.
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~-------g----~W~a~-- 285 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD-------G----EWAAE-- 285 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET-------T----EEEEE--
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC-------C----Ceeee--
Confidence 3456899999999998888864321 1334566 566776555554333 333333211 2 23321
Q ss_pred EEEEEe---------------cccccccEEEEEEccCCCEEEEEe-CCCeEEEEecCCCCCC
Q 001935 421 HLYKLH---------------RGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFGGD 466 (994)
Q Consensus 421 ~l~~L~---------------RG~t~a~I~sIaFSpDg~~LAsgS-~dGTVhIw~I~~~gg~ 466 (994)
.+.++- .|..+.-|++|..|.|.+||-++. .+|.|+.|+|+....+
T Consensus 286 kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 286 KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 122211 011245699999999999997765 5899999999875443
No 393
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.00 E-value=1.2e+02 Score=34.65 Aligned_cols=82 Identities=15% Similarity=0.191 Sum_probs=50.4
Q ss_pred ccCCCCe-EEEEECCCCcEEE--------EeccCCCCeEEEEECCCCCEEEEEEcCC-----CeEEEEeCCCCcccCCCC
Q 001935 344 DMDNAGI-VVVKDFVTRAIIS--------QFKAHTSPISALCFDPSGTLLVTASVYG-----NNINIFRIMPSCMRSGSG 409 (994)
Q Consensus 344 s~s~dG~-V~VwDl~s~~~i~--------~~~aHtspIsaLaFSPdGtlLATAS~dG-----t~IrVwdi~p~~~~~~sG 409 (994)
.+...|+ ..|+|....+.+. +|-+|. +|||||.+|. |++.| .+|-|||....
T Consensus 85 fARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LY-ATEndfd~~rGViGvYd~r~~------- 150 (366)
T COG3490 85 FARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLY-ATENDFDPNRGVIGVYDAREG------- 150 (366)
T ss_pred EEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEE-eecCCCCCCCceEEEEecccc-------
Confidence 3445565 6678887765433 445563 6999999997 44433 25888887532
Q ss_pred CCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 001935 410 NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (994)
Q Consensus 410 ~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS 450 (994)
.+++-++.. +.-.-..+.|.+||+.|+++.
T Consensus 151 ---------fqrvgE~~t--~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 151 ---------FQRVGEFST--HGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ---------cceeccccc--CCcCcceeEEecCCcEEEEeC
Confidence 123333321 111235789999999999873
No 394
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=42.71 E-value=1.4e+02 Score=35.38 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=28.0
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
..+.+...- ...|.++.|+.+ ..|++...||++++|++.
T Consensus 71 ~ll~~i~w~--~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 71 KLLSSIPWD--SGRIVGMGWTDD-EELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CEeEEEEEC--CCCEEEEEECCC-CeEEEEEcCCEEEEEeCC
Confidence 355554332 257999999975 566677899999999863
No 395
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=42.13 E-value=2.7e+02 Score=30.97 Aligned_cols=83 Identities=12% Similarity=0.195 Sum_probs=46.6
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-cccccccEEEEEEccC
Q 001935 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-RGITSATIQDICFSHY 442 (994)
Q Consensus 364 ~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~-RG~t~a~I~sIaFSpD 442 (994)
.+.+-...|+.|+|+|+...|++...+...|-..+.. | ..+.+.. .|. ...-+|++.-+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--------G----------~vlr~i~l~g~--~D~EgI~y~g~ 75 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--------G----------KVLRRIPLDGF--GDYEGITYLGN 75 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--------------------EEEEEE-SS---SSEEEEEE-ST
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--------C----------CEEEEEeCCCC--CCceeEEEECC
Confidence 3444455799999999866666655545544444431 3 2333321 332 34678999888
Q ss_pred CCEEEEEeCCCeEEEEecCCCCCC
Q 001935 443 SQWIAIVSSKGTCHVFVLSPFGGD 466 (994)
Q Consensus 443 g~~LAsgS~dGTVhIw~I~~~gg~ 466 (994)
++++++.-.++++.++.+...+..
T Consensus 76 ~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 76 GRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp TEEEEEETTTTEEEEEEE----TT
T ss_pred CEEEEEEcCCCcEEEEEEeccccc
Confidence 877776666899999999765543
No 396
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=40.42 E-value=2.6e+02 Score=35.40 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=54.2
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc--c
Q 001935 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS--H 441 (994)
Q Consensus 364 ~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFS--p 441 (994)
.|..--...+.+.-|.-++ +|..+.+++.+.|||... + +..|+-.- .....|.++.|. |
T Consensus 24 ~~~T~i~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~-------~----------~lE~~~~f-~~~~~I~dLDWtst~ 84 (631)
T PF12234_consen 24 TFETGISNPSLISGSSIKK-IAVVDSSRSELTIWDTRS-------G----------VLEYEESF-SEDDPIRDLDWTSTP 84 (631)
T ss_pred EEecCCCCcceEeecccCc-EEEEECCCCEEEEEEcCC-------c----------EEEEeeee-cCCCceeeceeeecC
Confidence 3333344556666666554 555677799999999853 2 33333211 123579999886 8
Q ss_pred CCCEEEEEeCCCeEEEEecCC
Q 001935 442 YSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 442 Dg~~LAsgS~dGTVhIw~I~~ 462 (994)
||+.+.+.+....|.||.--.
T Consensus 85 d~qsiLaVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 85 DGQSILAVGFPHHVLLYTQLR 105 (631)
T ss_pred CCCEEEEEEcCcEEEEEEccc
Confidence 999999999999999997543
No 397
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=36.88 E-value=59 Score=39.09 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=31.2
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEE
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFD 217 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVgl~~~I~IwD 217 (994)
..|.|||+.+++.++.+.+.. |..|-|++ .++|...++.|+|++
T Consensus 126 ~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~ 171 (443)
T PF04053_consen 126 DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILK 171 (443)
T ss_dssp TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEE
Confidence 579999999999999998875 89999997 588888888999976
No 398
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=36.32 E-value=1.8e+02 Score=22.19 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=18.4
Q ss_pred CCCCEEEEEEcCCCeEEEEeCC
Q 001935 379 PSGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 379 PdGtlLATAS~dGt~IrVwdi~ 400 (994)
|+|+.|..+...+..|-++|+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~ 22 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTA 22 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECC
Confidence 6889888888777789999974
No 399
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.31 E-value=3.3e+02 Score=31.39 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=36.0
Q ss_pred CCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEE
Q 001935 347 NAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIF 397 (994)
Q Consensus 347 ~dG~V~VwDl~s~-~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVw 397 (994)
.-|.|-|||...+ +.+..|..|.-.=-.|.+.+||++||.|- |. |+.-
T Consensus 138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GG-Ieth 186 (366)
T COG3490 138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GG-IETH 186 (366)
T ss_pred CCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--Cc-eecc
Confidence 4688999999854 46778888765556788999999999886 43 5543
No 400
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=34.71 E-value=5.6e+02 Score=28.99 Aligned_cols=43 Identities=9% Similarity=-0.152 Sum_probs=34.1
Q ss_pred EEEeCCCcEEEEEecCCeEEEEeCCeEEEEECCCCceeEEEee
Q 001935 187 HVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 187 ~tL~f~S~V~sV~~S~~iLAVgl~~~I~IwDa~Tle~l~tL~t 229 (994)
..+.+...+.++++....|.+-.++.|-++++.+++.++++..
T Consensus 238 ~~l~w~~~p~~~~~~~pyll~~~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 238 PILHWEFMPESFAYHSPYLLAFHDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred eEEEcCCcccEEEEECCEEEEEcCCcEEEEECCCCceEEEEec
Confidence 3567777788888877666666778899999999998887753
No 401
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=34.10 E-value=2.1e+02 Score=32.39 Aligned_cols=56 Identities=7% Similarity=0.060 Sum_probs=43.4
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEe
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVL 228 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~sV~~S~~iLAVgl-~~~I~IwDa~Tle~l~tL~ 228 (994)
++.-+||.++-+.+.++.++..=+.+..+.+.|+.+. .++|+++|..+++...++.
T Consensus 110 ~~~f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 110 GTGFVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp SEEEEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred CeEEEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEE
Confidence 6899999999999999999988899998887777655 4689999999999887776
No 402
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.78 E-value=4.2e+02 Score=30.63 Aligned_cols=40 Identities=5% Similarity=0.213 Sum_probs=31.3
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcccccc
Q 001935 431 SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (994)
Q Consensus 431 ~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H 472 (994)
++.--.+||+|..+.|..+=.+.-+.||.++ +++..+.-|
T Consensus 180 N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~--~~~~~l~~~ 219 (316)
T COG3204 180 NKGFEGLAWDPVDHRLFVAKERNPIGIFEVT--QSPSSLSVH 219 (316)
T ss_pred CcCceeeecCCCCceEEEEEccCCcEEEEEe--cCCcccccc
Confidence 4556789999999999999999999999987 344344434
No 403
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=32.12 E-value=95 Score=36.79 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=49.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEE-----CCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceE
Q 001935 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCF-----DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~aHtspIsaLaF-----SPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~ 421 (994)
....++|+...+.+..+......-....++| ...+..|+.--.+|. |++|.+ |. .+.
T Consensus 233 Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~-i~i~SL-P~----------------Lke 294 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGS-IRIYSL-PS----------------LKE 294 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE-EEEEET-TT------------------E
T ss_pred cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCc-EEEEEC-CC----------------chH
Confidence 4567888888877665444422223344566 357888888888776 999998 42 134
Q ss_pred EEEEec--ccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 001935 422 LYKLHR--GITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 422 l~~L~R--G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I 460 (994)
+..+.- ..+...+...+|+++|..+.-.+.. .+.+|.+
T Consensus 295 i~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 295 IKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp EEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred hhcccCCCccccccccccEECCCCCEEEEeCcc-cEEEEEE
Confidence 433322 1122235568889999987777655 4445554
No 404
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=31.87 E-value=1.4e+03 Score=30.75 Aligned_cols=94 Identities=12% Similarity=0.154 Sum_probs=55.3
Q ss_pred CeEEEEECCCCcEEEEecc--CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 349 GIVVVKDFVTRAIISQFKA--HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~a--HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
..+++||+..++.+...+- -..-|+.++. .+..++.++.+.. ++.+.-.+. + .+++.+.
T Consensus 954 ~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeS-V~~~~y~~~------~----------n~l~~fa 1014 (1205)
T KOG1898|consen 954 RFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQES-VHFVRYRRE------D----------NQLIVFA 1014 (1205)
T ss_pred cEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccce-EEEEEEecC------C----------CeEEEEe
Confidence 3577888877665544332 2345666655 5667888887665 444443332 1 3566654
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
--..+..|.++.+= |-..+|.+-.=|.+++-++.+
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 32223346655554 566788887778888877755
No 405
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=31.15 E-value=86 Score=39.42 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=58.3
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 001935 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (994)
Q Consensus 368 HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LA 447 (994)
|...|.--|++-.+++|+-|+..|. +.+|+-.. | . ..+++.. | ....+..++.|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~-lyl~~R~~-------~--------~-~~~~~~~-~-~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGS-VYLYNRHT-------G--------E-MRKLKNE-G-ATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCceEEEecccce-EEEEecCc-------h--------h-hhccccc-C-ccceEEEEEecchhHhhh
Confidence 4456667789999999999998776 78887431 2 0 1233332 2 223577789999999999
Q ss_pred EEeCCCeEEEEecCCCCCCc
Q 001935 448 IVSSKGTCHVFVLSPFGGDS 467 (994)
Q Consensus 448 sgS~dGTVhIw~I~~~gg~~ 467 (994)
+|+..|-|-||.++. ++++
T Consensus 93 agt~~g~V~v~ql~~-~~p~ 111 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNK-ELPR 111 (726)
T ss_pred hhcCCceEEeehhhc-cCCC
Confidence 999999999999987 4443
No 406
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=31.10 E-value=1.5e+02 Score=34.53 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=41.3
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEeCCC
Q 001935 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 350 ~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p 401 (994)
.|=++|+.+++.+..+..- .++.+|+.+.|.+ +|.+.+..+..+.|||...
T Consensus 270 eVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred EEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 5888899999999998852 3788999999998 7767776555699999864
No 407
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=31.08 E-value=1.1e+02 Score=38.00 Aligned_cols=63 Identities=17% Similarity=0.309 Sum_probs=39.5
Q ss_pred EEEECCCCCEEEEEEcCC-----CeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 001935 374 ALCFDPSGTLLVTASVYG-----NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (994)
Q Consensus 374 aLaFSPdGtlLATAS~dG-----t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs 448 (994)
-|+|+|.|+|.+.-+-.+ +..=+|.+... + +..-.+..|.++...+.+...+||||++.|.+
T Consensus 504 nl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~------~-------p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV 570 (616)
T COG3211 504 NLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTP------D-------PKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFV 570 (616)
T ss_pred ceEECCCCCEEEEecCCCCccCcccccccccccC------C-------CccceeeeeccCCCcceeecceeCCCCceEEE
Confidence 489999999877544222 22334433210 1 11124556667777789999999999987766
Q ss_pred E
Q 001935 449 V 449 (994)
Q Consensus 449 g 449 (994)
+
T Consensus 571 ~ 571 (616)
T COG3211 571 N 571 (616)
T ss_pred E
Confidence 5
No 408
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=30.09 E-value=82 Score=39.34 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=39.0
Q ss_pred CCCCeEEEEEC-CCC-cEEEEeccCCCC----eEEEEECCCCC-EEEEEEcCCCeEEEEeCCC
Q 001935 346 DNAGIVVVKDF-VTR-AIISQFKAHTSP----ISALCFDPSGT-LLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 346 s~dG~V~VwDl-~s~-~~i~~~~aHtsp----IsaLaFSPdGt-lLATAS~dGt~IrVwdi~p 401 (994)
..+|.|.+||. .+- ..+.++.-.+.+ +.++++.|.-+ +||+.+.+-.+|+.+++..
T Consensus 214 ~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 45999999993 222 233333333333 89999998765 6888888878899999864
No 409
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=30.00 E-value=1.2e+02 Score=35.18 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=37.8
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCe----------------EEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccccc
Q 001935 370 SPISALCFDPSGTLLVTASVYGNN----------------INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT 433 (994)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt~----------------IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~ 433 (994)
.....|+|.|||++.++-+..+.. =.||++.|. | ..+..+..|+. .
T Consensus 124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd------g----------~~~e~~a~G~r--n 185 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD------G----------GKLRVVAHGFQ--N 185 (367)
T ss_pred ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC------C----------CeEEEEecCcC--C
Confidence 456789999999988866632110 024444432 1 12223334543 2
Q ss_pred EEEEEEccCCCEEEEEe
Q 001935 434 IQDICFSHYSQWIAIVS 450 (994)
Q Consensus 434 I~sIaFSpDg~~LAsgS 450 (994)
.+.++|+++|+++++-.
T Consensus 186 p~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 186 PYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CccceECCCCCEEEEcc
Confidence 57899999999887644
No 410
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=28.78 E-value=57 Score=35.99 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=47.5
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCC-CCeEEEEECCCCCEEEEE--EcCCCeEEEEeCCC
Q 001935 344 DMDNAGIVVVKDFVTRAIISQFKAHT-SPISALCFDPSGTLLVTA--SVYGNNINIFRIMP 401 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~~i~~~~aHt-spIsaLaFSPdGtlLATA--S~dGt~IrVwdi~p 401 (994)
.+..+|.|+.|.+.-.+.+...-.|+ .++..+..+-.+..|+.+ |. +.+++.|++.+
T Consensus 119 ~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~-d~~~k~W~ve~ 178 (238)
T KOG2444|consen 119 VGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSH-DRVLKKWNVEK 178 (238)
T ss_pred EeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeecccc-chhhhhcchhh
Confidence 34689999999999998888888888 788888888888888888 76 56688898864
No 411
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=28.68 E-value=2.5e+02 Score=31.69 Aligned_cols=59 Identities=7% Similarity=0.050 Sum_probs=40.0
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcE-------EEEEecC-------CeEEEEeCC--eEEEEECCCCceeEEEeec
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRSSV-------CMVRCSP-------RIVAVGLAT--QIYCFDALTLENKFSVLTY 230 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S~V-------~sV~~S~-------~iLAVgl~~--~I~IwDa~Tle~l~tL~t~ 230 (994)
+-+|..||+++++.++++.|+..+ .++++.. .++-++... .|.+||+.+.+-.+.+..+
T Consensus 33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~ 107 (287)
T PF03022_consen 33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNS 107 (287)
T ss_dssp --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCG
T ss_pred CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCC
Confidence 458899999999999999987543 4555543 244455543 7999999998876666543
No 412
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=28.58 E-value=2.1e+02 Score=27.08 Aligned_cols=35 Identities=11% Similarity=0.241 Sum_probs=20.6
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEE
Q 001935 421 HLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458 (994)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw 458 (994)
.+..|.+|..- -..|++|+|+++|.++ +.++.+|.
T Consensus 48 ~~~vl~~~L~f--pNGVals~d~~~vlv~-Et~~~Ri~ 82 (89)
T PF03088_consen 48 ETTVLLDGLYF--PNGVALSPDESFVLVA-ETGRYRIL 82 (89)
T ss_dssp EEEEEEEEESS--EEEEEE-TTSSEEEEE-EGGGTEEE
T ss_pred eEEEehhCCCc--cCeEEEcCCCCEEEEE-eccCceEE
Confidence 34445555543 4889999999988765 23333443
No 413
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=28.07 E-value=1.6e+02 Score=32.84 Aligned_cols=89 Identities=22% Similarity=0.189 Sum_probs=51.6
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC--CeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 001935 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (994)
Q Consensus 351 V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dG--t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG 428 (994)
-.+||+.+++....-.....-++.=+|-|||++|.+++..+ +.||+|+-... + + ..+|...... |..+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~---~--~--~~~w~e~~~~---m~~~ 117 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTS---D--G--TCDWTESPND---MQSG 117 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCC---C--C--CCCceECccc---ccCC
Confidence 56899998875433233344466667899999999988643 45899985320 0 0 1123222111 2111
Q ss_pred cccccEEEEEEccCCCEEEEEeCC
Q 001935 429 ITSATIQDICFSHYSQWIAIVSSK 452 (994)
Q Consensus 429 ~t~a~I~sIaFSpDg~~LAsgS~d 452 (994)
--.. ...-=|||+.|++|+.+
T Consensus 118 RWYp---T~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 118 RWYP---TATTLPDGRVLIVGGSN 138 (243)
T ss_pred Cccc---cceECCCCCEEEEeCcC
Confidence 1111 23334799999999888
No 414
>PRK13684 Ycf48-like protein; Provisional
Probab=27.90 E-value=2.3e+02 Score=32.51 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=42.0
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 001935 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (994)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsg 449 (994)
..+.++.+.|+|.+++++.. |..++-++ .. | +.-..+.++ +...+++++|.++++.++++
T Consensus 173 g~~~~i~~~~~g~~v~~g~~-G~i~~s~~--~g------g----------~tW~~~~~~-~~~~l~~i~~~~~g~~~~vg 232 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSR-GNFYSTWE--PG------Q----------TAWTPHQRN-SSRRLQSMGFQPDGNLWMLA 232 (334)
T ss_pred ceEEEEEECCCCeEEEEeCC-ceEEEEcC--CC------C----------CeEEEeeCC-CcccceeeeEcCCCCEEEEe
Confidence 46788999999988877765 75444332 10 1 111122233 34579999999999987765
Q ss_pred eCCCeEE
Q 001935 450 SSKGTCH 456 (994)
Q Consensus 450 S~dGTVh 456 (994)
..|.+.
T Consensus 233 -~~G~~~ 238 (334)
T PRK13684 233 -RGGQIR 238 (334)
T ss_pred -cCCEEE
Confidence 567753
No 415
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=27.81 E-value=1.9e+02 Score=34.48 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=20.7
Q ss_pred EEEEeccC-CCCeEEEEECCCCCEEEEEEcC
Q 001935 361 IISQFKAH-TSPISALCFDPSGTLLVTASVY 390 (994)
Q Consensus 361 ~i~~~~aH-tspIsaLaFSPdGtlLATAS~d 390 (994)
++..|..+ .+.=..|.|+|||+|.+|.+..
T Consensus 167 i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~ 197 (399)
T COG2133 167 IFRGIPKGGHHFGGRLVFGPDGKLYVTTGSN 197 (399)
T ss_pred EeecCCCCCCcCcccEEECCCCcEEEEeCCC
Confidence 33444432 1344689999999999988765
No 416
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=27.53 E-value=2.9e+02 Score=33.60 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCeEEEEEecCc-EEEEEccC---CCcceEeeeeccC----------------------CEEEEEEec----CCCCCCCC
Q 001935 74 FKQVLLLGYQNG-FQVLDVED---ASNFNELVSKRDG----------------------PVSFLQMQP----FPVKDDGC 123 (994)
Q Consensus 74 ~~~vL~lGy~~G-~qVWDv~~---~g~v~ells~hdG----------------------pV~~v~~lP----~p~~s~~~ 123 (994)
....|++++.+| +-...... .+...+..-..+. .+..+.+.+ .-
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 230 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD------ 230 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT------
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC------
Q ss_pred CCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe
Q 001935 124 EGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR 190 (994)
Q Consensus 124 D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~ 190 (994)
.+|++++.| +++|+||+++++++.++.
T Consensus 231 -------~~l~tl~~D---------------------------------~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 231 -------TFLFTLSRD---------------------------------HTLRIWSLETGQCLATID 257 (547)
T ss_dssp -------TEEEEEETT---------------------------------SEEEEEETTTTCEEEEEE
T ss_pred -------CEEEEEeCC---------------------------------CeEEEEECCCCeEEEEec
No 417
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=27.47 E-value=4.7e+02 Score=29.61 Aligned_cols=39 Identities=26% Similarity=0.502 Sum_probs=29.8
Q ss_pred eEEEEEecCcEEEEEccCC-CcceEeeeeccCCEEEEEEecC
Q 001935 76 QVLLLGYQNGFQVLDVEDA-SNFNELVSKRDGPVSFLQMQPF 116 (994)
Q Consensus 76 ~vL~lGy~~G~qVWDv~~~-g~v~ells~hdGpV~~v~~lP~ 116 (994)
+.|++|.+.|+-+-+++.. +...++++.+ +|..+.+++.
T Consensus 14 ~~lL~GTe~Gly~~~~~~~~~~~~kl~~~~--~v~q~~v~~~ 53 (302)
T smart00036 14 KWLLVGTEEGLYVLNISDQPGTLEKLIGRR--SVTQIWVLEE 53 (302)
T ss_pred cEEEEEeCCceEEEEcccCCCCeEEecCcC--ceEEEEEEhh
Confidence 5799999999988888543 4566776654 7999998853
No 418
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.80 E-value=2.2e+02 Score=35.07 Aligned_cols=84 Identities=14% Similarity=0.280 Sum_probs=50.7
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcc--------eEEEEEecccccccEEEEEEccC
Q 001935 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH--------VHLYKLHRGITSATIQDICFSHY 442 (994)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~--------~~l~~L~RG~t~a~I~sIaFSpD 442 (994)
.|..+..|+.|.++|-++.+| |.|..+......+ + ..-|-.... ..+|. ..+.-.+...+|.||
T Consensus 105 eV~~vl~s~~GS~VaL~G~~G--i~vMeLp~rwG~~--s-~~eDgk~~v~CRt~~i~~~~ft---ss~~ltl~Qa~WHP~ 176 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKG--LMVMELPKRWGKN--S-EFEDGKSTVNCRTTPVAERFFT---SSTSLTLKQAAWHPS 176 (741)
T ss_pred EEEEEEecCCCceEEEecCCe--eEEEEchhhcCcc--c-eecCCCceEEEEeecccceeec---cCCceeeeeccccCC
Confidence 467788899999999888876 4555552111000 0 000101111 11121 112225778999999
Q ss_pred C---CEEEEEeCCCeEEEEecCC
Q 001935 443 S---QWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 443 g---~~LAsgS~dGTVhIw~I~~ 462 (994)
+ ..|..=++|.+++||++..
T Consensus 177 S~~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 177 SILDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred ccCCceEEEEecCcEEEEEecCC
Confidence 7 7888999999999999875
No 419
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.06 E-value=2.3e+02 Score=32.27 Aligned_cols=56 Identities=18% Similarity=0.016 Sum_probs=42.2
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCC
Q 001935 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (994)
+-+.|.+.+.++.++..+..|..-..-=..-..+++|.++..+|.|++ +..-|...
T Consensus 69 GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~-~yalD~~~ 124 (354)
T KOG4649|consen 69 GCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGN-FYALDPKT 124 (354)
T ss_pred EEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCc-EEEecccc
Confidence 467888999999999888888765332223457899999999999766 77777654
No 420
>PRK10115 protease 2; Provisional
Probab=24.68 E-value=2.9e+02 Score=35.07 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=38.7
Q ss_pred CCeEEEEECCCCCEEEEEEcC-CC---eEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 001935 370 SPISALCFDPSGTLLVTASVY-GN---NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (994)
Q Consensus 370 spIsaLaFSPdGtlLATAS~d-Gt---~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~ 445 (994)
-.+..+.+||||++||-+-.. |. .|+|.++.. | ..+-+. ..... ..++|++|++.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t-------g----------~~l~~~---i~~~~-~~~~w~~D~~~ 185 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET-------G----------NWYPEL---LDNVE-PSFVWANDSWT 185 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC-------C----------CCCCcc---ccCcc-eEEEEeeCCCE
Confidence 347778999999998876543 32 366666642 2 111111 11122 45999999998
Q ss_pred EEEEeCC
Q 001935 446 IAIVSSK 452 (994)
Q Consensus 446 LAsgS~d 452 (994)
|+.+..+
T Consensus 186 ~~y~~~~ 192 (686)
T PRK10115 186 FYYVRKH 192 (686)
T ss_pred EEEEEec
Confidence 8888765
No 421
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=24.53 E-value=7.1e+02 Score=31.82 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=37.5
Q ss_pred CCCEEEEEECCCCeEEEEEeCCC-------cEEEEE-ecCCeEEEEeCCeEEEEECC
Q 001935 171 SPTAVRFYSFQSHCYEHVLRFRS-------SVCMVR-CSPRIVAVGLATQIYCFDAL 219 (994)
Q Consensus 171 sp~tVrLWDlktge~V~tL~f~S-------~V~sV~-~S~~iLAVgl~~~I~IwDa~ 219 (994)
...++.+|++-+-+..+++..+. .+.++. .+++++..+.+++||+.|+.
T Consensus 249 ~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~ 305 (670)
T PF10395_consen 249 SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLK 305 (670)
T ss_pred eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCCCeEEEEcCCEEEEEeeh
Confidence 45889999998888888887652 234443 35688899999999999976
No 422
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=24.39 E-value=7.9e+02 Score=25.34 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=13.9
Q ss_pred cEEEEcCCccEEEEec
Q 001935 569 HLLVYTPSGYVVQHEL 584 (994)
Q Consensus 569 ~LlV~s~~G~l~~Y~L 584 (994)
=|.|.+.+|.|.+|.-
T Consensus 105 lLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 105 LLAVLTSNGRLSLYGP 120 (173)
T ss_pred EEEEEcCCCeEEEEec
Confidence 4889999999999984
No 423
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=23.76 E-value=3.4e+02 Score=23.54 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCEEEEEEcC----CCeEEEEeCCC
Q 001935 371 PISALCFDPSGTLLVTASVY----GNNINIFRIMP 401 (994)
Q Consensus 371 pIsaLaFSPdGtlLATAS~d----Gt~IrVwdi~p 401 (994)
.+.++++.|||++|+.+... ...+.|+++.+
T Consensus 2 ~~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~ 36 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNA 36 (55)
T ss_pred ceEEEEECCCCcEEEEEEeecCCCcccEEEEEECC
Confidence 35789999999999988742 22345555544
No 424
>PRK10115 protease 2; Provisional
Probab=23.70 E-value=6.6e+02 Score=32.00 Aligned_cols=100 Identities=5% Similarity=-0.021 Sum_probs=55.3
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-C----CeEEEEeCCCCcccCCCCCCccccCCcc
Q 001935 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-G----NNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~d-G----t~IrVwdi~p~~~~~~sG~~~~~~~~s~ 419 (994)
++..-.+.|.|+.++..+.....+.. ..++|.+||+.|+-...+ + ..|..+++.. + ....
T Consensus 149 G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt-------~------~~~d 213 (686)
T PRK10115 149 SRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT-------P------ASQD 213 (686)
T ss_pred CcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC-------C------hhHC
Confidence 33445699999998864322222222 459999999866655543 2 2344455532 1 0012
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCC---eEEEEecCC
Q 001935 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG---TCHVFVLSP 462 (994)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dG---TVhIw~I~~ 462 (994)
+++++- . ....-..+..+.|++++...+..+ .+.+|+...
T Consensus 214 ~lv~~e--~-~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 214 ELVYEE--K-DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred eEEEee--C-CCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 455542 1 111112445566999988776665 367777543
No 425
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=23.08 E-value=2.1e+02 Score=34.76 Aligned_cols=55 Identities=25% Similarity=0.480 Sum_probs=0.0
Q ss_pred EEEECCCCCEEEEEEcCCCeE-----------------------------EEEeCCCCcccCCCCCCccccCCcce----
Q 001935 374 ALCFDPSGTLLVTASVYGNNI-----------------------------NIFRIMPSCMRSGSGNHKYDWNSSHV---- 420 (994)
Q Consensus 374 aLaFSPdGtlLATAS~dGt~I-----------------------------rVwdi~p~~~~~~sG~~~~~~~~s~~---- 420 (994)
.|+|.|||+|.++.+..|... +|+++.+. | .
T Consensus 150 rI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~D------G----------siP~d 213 (454)
T TIGR03606 150 RLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLD------G----------SIPKD 213 (454)
T ss_pred eEEECCCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCC------C----------CCCCC
Q ss_pred ---------EEEEEecccccccEEEEEEccCCCEEEE
Q 001935 421 ---------HLYKLHRGITSATIQDICFSHYSQWIAI 448 (994)
Q Consensus 421 ---------~l~~L~RG~t~a~I~sIaFSpDg~~LAs 448 (994)
.+|.+ |+.+. +.++|.|+++..++
T Consensus 214 NPf~~g~~~eIyA~--G~RNp--~Gla~dp~G~Lw~~ 246 (454)
T TIGR03606 214 NPSINGVVSHIFTY--GHRNP--QGLAFTPDGTLYAS 246 (454)
T ss_pred CCccCCCcceEEEE--ecccc--ceeEECCCCCEEEE
No 426
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=22.55 E-value=2.7e+02 Score=30.60 Aligned_cols=58 Identities=17% Similarity=0.405 Sum_probs=38.6
Q ss_pred EEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 001935 375 LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (994)
Q Consensus 375 LaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~d 452 (994)
++-++.+.+++.++ |..|.+|++... + ...+++|. |-..|..|+.+.-|.||++-=.+
T Consensus 23 ~c~~g~d~Lfva~~--g~~Vev~~l~~~------~---------~~~~~~F~---Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 23 VCCGGPDALFVAAS--GCKVEVYDLEQE------E---------CPLLCTFS---TVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred eeccCCceEEEEcC--CCEEEEEEcccC------C---------CceeEEEc---chhheeEEEeccccceEEEEEee
Confidence 34444334434333 678999999732 1 25677774 44679999999999999986444
No 427
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=22.53 E-value=2.2e+02 Score=26.78 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=23.1
Q ss_pred EEEEEccCCCEEEEEeC-CCeEEEEecCC
Q 001935 435 QDICFSHYSQWIAIVSS-KGTCHVFVLSP 462 (994)
Q Consensus 435 ~sIaFSpDg~~LAsgS~-dGTVhIw~I~~ 462 (994)
..|++|||+++|.+++. +++||||++..
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 67999999999977655 58999998753
No 428
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=22.52 E-value=33 Score=42.57 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=60.3
Q ss_pred CCCCeEEEEECCCC----cEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcce
Q 001935 346 DNAGIVVVKDFVTR----AIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (994)
Q Consensus 346 s~dG~V~VwDl~s~----~~i~~~~a-HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~ 420 (994)
..+-.+.|||+.++ +.-..|.+ -....+.+|+..+-++|.+|.. -+.+++||+...+... .
T Consensus 126 rnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~-sr~~~ifdlRqs~~~~-------------~ 191 (783)
T KOG1008|consen 126 RNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT-SRSVHIFDLRQSLDSV-------------S 191 (783)
T ss_pred cccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc-cchhhhhhhhhhhhhh-------------h
Confidence 35667889999876 22344444 3445668999988888887777 5679999986431110 0
Q ss_pred EEEEEecccccccEEEEEEcc-CCCEEEEEeCCCeEEEEec
Q 001935 421 HLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSp-Dg~~LAsgS~dGTVhIw~I 460 (994)
-+.+ ..++.+..+| ...|+|+.+ ||-|-||+-
T Consensus 192 svnT-------k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 192 SVNT-------KYVQGITVDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred hhhh-------hhcccceecCCCCCceeccc-cCceeeccc
Confidence 1111 1244455666 567888777 999999994
No 429
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.21 E-value=2.4e+02 Score=30.58 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=38.2
Q ss_pred CCCCeEEEEECCCCcEEEE-------ec-------cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeC
Q 001935 346 DNAGIVVVKDFVTRAIISQ-------FK-------AHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~-------~~-------aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (994)
..+|.+.|||+.+++.+.. +. .....|..+.++.+|.-|++=+. |. ..+|+.
T Consensus 29 T~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~-~y~y~~ 94 (219)
T PF07569_consen 29 TSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GD-SYSYSP 94 (219)
T ss_pred eCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CC-EEEecc
Confidence 5789999999998764321 11 24567888888899988888776 65 577775
No 430
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=22.16 E-value=1.6e+02 Score=22.16 Aligned_cols=25 Identities=28% Similarity=0.635 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEe
Q 001935 433 TIQDICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 433 ~I~sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
.|.+|+-++ .|+|++++.+-++||.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 367777775 5999999999999984
No 431
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=21.29 E-value=2.3e+02 Score=26.85 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=29.7
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 001935 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV 389 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~ 389 (994)
.+...|.+.-||..+++....+.+-. -=+-+++++||+.|+.+-.
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGLY-FPNGVALSPDESFVLVAET 76 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSEEEEEEG
T ss_pred cCCCCcCEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCEEEEEec
Confidence 45678999999999987544444322 2367999999997776654
No 432
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=21.17 E-value=4.5e+02 Score=30.04 Aligned_cols=23 Identities=4% Similarity=-0.009 Sum_probs=17.6
Q ss_pred cccEEEEEEccCCCEEEEEeCCC
Q 001935 431 SATIQDICFSHYSQWIAIVSSKG 453 (994)
Q Consensus 431 ~a~I~sIaFSpDg~~LAsgS~dG 453 (994)
+..+-.|+++|||+.|.++....
T Consensus 146 N~G~E~la~~~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 146 NRGFEGLAVSPDGRTLFAAMESP 168 (326)
T ss_pred CCCeEEEEECCCCCEEEEEECcc
Confidence 44678999999999777666554
No 433
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.01 E-value=4.9e+02 Score=35.38 Aligned_cols=139 Identities=14% Similarity=0.214 Sum_probs=0.0
Q ss_pred CCCCCEEEEEECCCCeEEEEE-eCCCcEEEEEecC-----------CeEEEEeCCeEEEEECCCCceeEEEeecCCcccc
Q 001935 169 VNSPTAVRFYSFQSHCYEHVL-RFRSSVCMVRCSP-----------RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLA 236 (994)
Q Consensus 169 ~~sp~tVrLWDlktge~V~tL-~f~S~V~sV~~S~-----------~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~ 236 (994)
+..++.+-+|+..++...+.+ .+...|+.|.+=+ .+|+++..-.|.|+-+.-.+.-..+...-.
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~---- 170 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNT---- 170 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccc----
Q ss_pred CCCccccccCccceEEcc-----cEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccce
Q 001935 237 GQGAVGINVGYGPMAVGP-----RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSK 311 (994)
Q Consensus 237 ~~g~~~vnv~~gplAlgp-----RwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~k 311 (994)
.+.++. +.++|..+.-++.
T Consensus 171 ------------~~~i~~dg~~V~~I~~t~nGRIF~-------------------------------------------- 194 (1311)
T KOG1900|consen 171 ------------SFKISVDGVSVNCITYTENGRIFF-------------------------------------------- 194 (1311)
T ss_pred ------------ceeeecCCceEEEEEeccCCcEEE--------------------------------------------
Q ss_pred eeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECC-------------------------CCcEEEEec
Q 001935 312 TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-------------------------TRAIISQFK 366 (994)
Q Consensus 312 tlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~-------------------------s~~~i~~~~ 366 (994)
++.|| .||.+. -+..+..+-
T Consensus 195 ---------------------------------~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~ 239 (1311)
T KOG1900|consen 195 ---------------------------------AGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG 239 (1311)
T ss_pred ---------------------------------eecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCC
Q 001935 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG 409 (994)
Q Consensus 367 aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG 409 (994)
.|..||..|+.+.+-.+|.+=+++|+ |++|++.++ |
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~-v~~Y~i~~~------G 275 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGT-VSAYDIGGN------G 275 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCce-EEEEEccCC------C
No 434
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.50 E-value=1.2e+02 Score=32.85 Aligned_cols=26 Identities=15% Similarity=0.200 Sum_probs=23.0
Q ss_pred EccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 439 FSHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 439 FSpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
+..++.||++-+.+|+++||++...+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k 43 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGK 43 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCe
Confidence 55789999999999999999998754
No 435
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.18 E-value=2.9e+02 Score=33.64 Aligned_cols=80 Identities=16% Similarity=0.317 Sum_probs=55.0
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE
Q 001935 369 TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI 448 (994)
Q Consensus 369 tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs 448 (994)
.++|.++.||+|.+.||.--. ...|..++..++- ......++.+. .++.|....|+. ++-||.
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~-~~~v~f~nf~~d~-------------~~l~~~~~ck~--k~~~IlGF~W~~-s~e~A~ 128 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRT-SKTVDFCNFIPDN-------------SQLEYTQECKT--KNANILGFCWTS-STEIAF 128 (657)
T ss_pred CCceeEEEeccCcceEEEEec-CceEEEEecCCCc-------------hhhHHHHHhcc--CcceeEEEEEec-CeeEEE
Confidence 358999999999999998776 4568888875420 00011122222 345699999994 588999
Q ss_pred EeCCCeEEEEecCCCCCC
Q 001935 449 VSSKGTCHVFVLSPFGGD 466 (994)
Q Consensus 449 gS~dGTVhIw~I~~~gg~ 466 (994)
.+..| +-+|.+.+....
T Consensus 129 i~~~G-~e~y~v~pekrs 145 (657)
T KOG2377|consen 129 ITDQG-IEFYQVLPEKRS 145 (657)
T ss_pred EecCC-eEEEEEchhhhh
Confidence 88887 578988876544
No 436
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=20.00 E-value=2e+03 Score=28.36 Aligned_cols=58 Identities=12% Similarity=-0.017 Sum_probs=36.6
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcE-------------EEEEec----CCeEEEEe-----------CCeEEEEECCCCce
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRSSV-------------CMVRCS----PRIVAVGL-----------ATQIYCFDALTLEN 223 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S~V-------------~sV~~S----~~iLAVgl-----------~~~I~IwDa~Tle~ 223 (994)
++.|.=.|.++|+.+..+...+.| +.+... .+.|+++. .+.|+-||+.|++.
T Consensus 269 Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 269 DARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred CCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 355666788888877655433332 111222 25666653 34699999999999
Q ss_pred eEEEee
Q 001935 224 KFSVLT 229 (994)
Q Consensus 224 l~tL~t 229 (994)
+.....
T Consensus 349 ~W~~~~ 354 (764)
T TIGR03074 349 VWAWDP 354 (764)
T ss_pred eeEEec
Confidence 888764
Done!