Query 001935
Match_columns 994
No_of_seqs 363 out of 2272
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 05:19:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001935.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001935hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vu4_A KMHSV2; beta-propeller 100.0 2E-28 6.9E-33 268.7 38.0 241 52-463 15-272 (355)
2 3ow8_A WD repeat-containing pr 100.0 1.7E-25 5.7E-30 242.6 37.9 283 51-461 27-320 (321)
3 1vyh_C Platelet-activating fac 99.9 9.5E-26 3.2E-30 252.2 32.2 292 53-460 105-409 (410)
4 4gqb_B Methylosome protein 50; 99.9 1.9E-25 6.5E-30 246.1 31.0 280 54-463 28-332 (344)
5 4g56_B MGC81050 protein; prote 99.9 7.3E-25 2.5E-29 241.0 31.4 284 53-466 39-347 (357)
6 1got_B GT-beta; complex (GTP-b 99.9 1E-23 3.4E-28 228.9 37.0 254 52-473 51-312 (340)
7 2ynn_A Coatomer subunit beta'; 99.9 1.2E-23 3.9E-28 224.9 32.2 252 52-472 9-269 (304)
8 4h5i_A Guanine nucleotide-exch 99.9 3.2E-23 1.1E-27 228.9 34.7 226 84-462 104-343 (365)
9 2ymu_A WD-40 repeat protein; u 99.9 2.5E-23 8.7E-28 237.9 34.6 304 53-459 259-577 (577)
10 3frx_A Guanine nucleotide-bind 99.9 4.9E-23 1.7E-27 221.9 34.9 280 52-462 13-317 (319)
11 1nr0_A Actin interacting prote 99.9 2.4E-23 8.1E-28 244.8 33.8 335 52-464 143-569 (611)
12 2pm7_B Protein transport prote 99.9 5.1E-23 1.7E-27 219.2 33.1 264 52-464 5-287 (297)
13 2pbi_B Guanine nucleotide-bind 99.9 1.4E-22 4.9E-27 222.1 33.6 255 52-472 60-325 (354)
14 4ery_A WD repeat-containing pr 99.9 5.1E-22 1.8E-26 210.5 36.7 279 52-461 19-311 (312)
15 3zwl_B Eukaryotic translation 99.9 8.7E-22 3E-26 209.0 37.1 292 52-462 28-346 (369)
16 1erj_A Transcriptional repress 99.9 2E-22 6.7E-27 223.4 33.1 283 54-462 62-389 (393)
17 2xzm_R RACK1; ribosome, transl 99.9 2E-22 6.7E-27 218.6 31.8 288 52-462 17-340 (343)
18 3iz6_a 40S ribosomal protein R 99.9 4E-22 1.4E-26 220.0 34.5 275 52-462 62-375 (380)
19 1got_B GT-beta; complex (GTP-b 99.9 6.9E-22 2.4E-26 214.5 35.7 236 54-459 95-340 (340)
20 3fm0_A Protein CIAO1; WDR39,SG 99.9 3.7E-22 1.3E-26 217.4 33.4 292 52-464 11-337 (345)
21 4gga_A P55CDC, cell division c 99.9 8.1E-22 2.8E-26 219.7 36.8 271 75-464 116-397 (420)
22 1r5m_A SIR4-interacting protei 99.9 1.3E-22 4.4E-27 219.6 29.4 291 55-461 107-424 (425)
23 1nr0_A Actin interacting prote 99.9 1.9E-22 6.4E-27 237.2 33.1 294 53-463 15-356 (611)
24 3k26_A Polycomb protein EED; W 99.9 3.5E-22 1.2E-26 212.3 31.5 317 53-461 15-365 (366)
25 3ow8_A WD repeat-containing pr 99.9 1.1E-22 3.7E-27 220.5 27.5 255 98-472 25-289 (321)
26 1gxr_A ESG1, transducin-like e 99.9 2E-21 6.9E-26 204.0 33.4 273 54-460 49-335 (337)
27 2hes_X YDR267CP; beta-propelle 99.9 1.2E-21 4.1E-26 212.1 32.4 285 52-462 10-328 (330)
28 2ymu_A WD-40 repeat protein; u 99.9 9.7E-22 3.3E-26 224.8 33.2 316 54-473 219-549 (577)
29 3mmy_A MRNA export factor; mRN 99.9 1.1E-21 3.7E-26 208.2 30.6 290 52-464 35-348 (368)
30 3bg1_A Protein SEC13 homolog; 99.9 4E-22 1.4E-26 214.6 27.2 266 52-463 9-294 (316)
31 2ynn_A Coatomer subunit beta'; 99.9 3.7E-21 1.3E-25 205.5 34.5 242 53-462 52-302 (304)
32 3odt_A Protein DOA1; ubiquitin 99.9 3.3E-21 1.1E-25 200.8 33.0 273 52-463 14-297 (313)
33 3jrp_A Fusion protein of prote 99.9 1.5E-21 5.2E-26 208.4 31.0 263 52-463 7-288 (379)
34 1vyh_C Platelet-activating fac 99.9 3.9E-22 1.3E-26 223.0 27.0 252 98-473 101-380 (410)
35 2pbi_B Guanine nucleotide-bind 99.9 7.7E-21 2.6E-25 208.4 35.7 225 73-459 116-354 (354)
36 1sq9_A Antiviral protein SKI8; 99.9 1.8E-21 6.2E-26 211.1 29.7 286 52-462 12-395 (397)
37 3f3f_A Nucleoporin SEH1; struc 99.9 5E-21 1.7E-25 199.6 32.0 280 52-465 7-340 (351)
38 4ggc_A P55CDC, cell division c 99.9 2.3E-20 7.9E-25 195.3 36.7 268 76-462 37-315 (318)
39 3dm0_A Maltose-binding peripla 99.9 2.8E-21 9.7E-26 229.6 32.4 318 19-463 343-694 (694)
40 2pm9_A Protein WEB1, protein t 99.9 1.4E-22 4.8E-27 220.7 18.9 304 54-463 65-415 (416)
41 4aez_A CDC20, WD repeat-contai 99.9 1.7E-20 5.9E-25 207.3 35.4 267 75-464 104-382 (401)
42 4a11_B DNA excision repair pro 99.9 1.8E-20 6.3E-25 202.1 33.7 265 52-466 39-369 (408)
43 4aow_A Guanine nucleotide-bind 99.9 8.4E-20 2.9E-24 192.9 37.1 280 52-462 34-337 (340)
44 3ei3_B DNA damage-binding prot 99.9 8.4E-21 2.9E-25 206.6 29.6 280 52-462 69-382 (383)
45 3vl1_A 26S proteasome regulato 99.9 1E-20 3.6E-25 207.1 30.1 252 74-464 108-367 (420)
46 3i2n_A WD repeat-containing pr 99.9 3.3E-21 1.1E-25 204.5 24.8 302 53-463 15-354 (357)
47 1k8k_C P40, ARP2/3 complex 41 99.9 9.7E-21 3.3E-25 202.6 28.1 313 54-462 6-361 (372)
48 1r5m_A SIR4-interacting protei 99.9 2.9E-20 9.9E-25 201.1 31.7 287 56-463 45-362 (425)
49 3iz6_a 40S ribosomal protein R 99.9 2.4E-21 8.2E-26 213.7 23.3 262 86-464 48-331 (380)
50 3v7d_B Cell division control p 99.9 7.7E-20 2.6E-24 204.2 34.5 285 52-463 117-422 (464)
51 3frx_A Guanine nucleotide-bind 99.9 2.4E-20 8.2E-25 200.9 28.5 247 97-463 9-268 (319)
52 1erj_A Transcriptional repress 99.9 4.2E-20 1.5E-24 204.7 29.9 257 103-473 62-352 (393)
53 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.9E-19 6.4E-24 201.1 34.2 273 53-463 156-443 (445)
54 1pgu_A Actin interacting prote 99.9 1.1E-19 3.6E-24 207.9 32.4 312 54-463 201-573 (615)
55 4ery_A WD repeat-containing pr 99.9 1.7E-19 5.7E-24 191.2 31.6 216 96-472 14-233 (312)
56 3gre_A Serine/threonine-protei 99.9 1.9E-20 6.6E-25 207.4 24.7 253 53-472 60-369 (437)
57 3fm0_A Protein CIAO1; WDR39,SG 99.9 1.2E-19 4.2E-24 197.5 30.0 262 97-463 7-284 (345)
58 3sfz_A APAF-1, apoptotic pepti 99.9 3.4E-19 1.2E-23 223.5 37.6 289 53-462 612-913 (1249)
59 2pm9_A Protein WEB1, protein t 99.9 3.8E-20 1.3E-24 201.5 24.9 274 76-467 26-342 (416)
60 3dw8_B Serine/threonine-protei 99.9 2.5E-20 8.6E-25 205.3 23.4 259 55-472 27-382 (447)
61 2j04_B YDR362CP, TAU91; beta p 99.9 4.4E-20 1.5E-24 216.2 25.8 288 75-462 173-517 (524)
62 3vl1_A 26S proteasome regulato 99.8 7.3E-20 2.5E-24 200.4 25.2 229 74-465 67-325 (420)
63 2xzm_R RACK1; ribosome, transl 99.8 6.4E-19 2.2E-23 191.1 32.1 259 97-463 13-286 (343)
64 3mkq_A Coatomer beta'-subunit; 99.8 6E-19 2E-23 210.2 34.4 280 52-463 9-303 (814)
65 1yfq_A Cell cycle arrest prote 99.8 2.1E-19 7.3E-24 190.4 27.1 276 52-460 7-322 (342)
66 2ovr_B FBW7, F-BOX/WD repeat p 99.8 2.5E-18 8.5E-23 192.0 37.0 272 52-463 114-392 (445)
67 3dwl_C Actin-related protein 2 99.8 1.1E-20 3.8E-25 204.3 17.3 240 56-462 11-281 (377)
68 1p22_A F-BOX/WD-repeat protein 99.8 9.1E-19 3.1E-23 195.6 32.7 231 53-463 130-366 (435)
69 4e54_B DNA damage-binding prot 99.8 9.5E-20 3.3E-24 204.2 24.7 282 54-463 117-431 (435)
70 3zwl_B Eukaryotic translation 99.8 7.4E-19 2.5E-23 186.4 28.8 259 101-472 28-314 (369)
71 2hes_X YDR267CP; beta-propelle 99.8 8.9E-19 3E-23 189.6 29.9 252 96-461 5-279 (330)
72 1p22_A F-BOX/WD-repeat protein 99.8 4.8E-19 1.7E-23 197.9 28.5 241 53-464 170-416 (435)
73 2oaj_A Protein SNI1; WD40 repe 99.8 2.4E-19 8.2E-24 222.1 28.7 110 329-462 494-661 (902)
74 4gqb_B Methylosome protein 50; 99.8 4E-19 1.4E-23 195.6 27.4 235 56-401 82-331 (344)
75 4aow_A Guanine nucleotide-bind 99.8 2E-18 6.8E-23 182.3 31.3 246 95-462 28-286 (340)
76 1pgu_A Actin interacting prote 99.8 1.1E-18 3.6E-23 199.6 31.0 242 52-464 14-285 (615)
77 1gxr_A ESG1, transducin-like e 99.8 5.6E-19 1.9E-23 185.4 25.3 263 73-463 19-297 (337)
78 4g56_B MGC81050 protein; prote 99.8 4.8E-19 1.7E-23 194.6 25.2 236 54-400 92-342 (357)
79 3sfz_A APAF-1, apoptotic pepti 99.8 4.6E-18 1.6E-22 213.3 36.4 324 53-473 654-1003(1249)
80 1l0q_A Surface layer protein; 99.8 9.9E-18 3.4E-22 182.1 34.0 271 75-472 2-285 (391)
81 2xyi_A Probable histone-bindin 99.8 2.2E-18 7.4E-23 193.3 29.2 239 75-462 141-410 (430)
82 2aq5_A Coronin-1A; WD40 repeat 99.8 1E-18 3.4E-23 192.6 25.6 227 77-463 49-300 (402)
83 3dm0_A Maltose-binding peripla 99.8 2.9E-18 9.9E-23 203.8 31.0 247 98-464 375-634 (694)
84 2aq5_A Coronin-1A; WD40 repeat 99.8 2.7E-18 9.3E-23 189.1 28.5 251 52-463 77-343 (402)
85 1sq9_A Antiviral protein SKI8; 99.8 2.1E-18 7.2E-23 187.0 27.0 265 97-465 8-325 (397)
86 3jro_A Fusion protein of prote 99.8 6.8E-19 2.3E-23 212.9 25.6 264 52-464 5-287 (753)
87 3gre_A Serine/threonine-protei 99.8 3.2E-18 1.1E-22 189.6 28.2 269 54-459 109-437 (437)
88 1k8k_C P40, ARP2/3 complex 41 99.8 1.9E-18 6.4E-23 184.9 25.3 243 99-462 2-274 (372)
89 3lrv_A PRE-mRNA-splicing facto 99.8 2.3E-18 7.7E-23 186.4 26.1 102 344-463 187-293 (343)
90 3i2n_A WD repeat-containing pr 99.8 2.5E-17 8.6E-22 174.7 33.5 259 97-464 10-293 (357)
91 2vdu_B TRNA (guanine-N(7)-)-me 99.8 6.2E-18 2.1E-22 190.0 30.3 177 172-460 124-337 (450)
92 2w18_A PALB2, fancn, partner a 99.8 4.2E-18 1.4E-22 190.6 27.8 272 74-460 53-355 (356)
93 2pm7_B Protein transport prote 99.8 7.2E-18 2.5E-22 179.5 28.3 208 100-463 4-239 (297)
94 4a11_B DNA excision repair pro 99.8 2E-18 6.8E-23 186.2 23.7 225 83-465 22-279 (408)
95 3odt_A Protein DOA1; ubiquitin 99.8 5.9E-18 2E-22 176.2 24.9 246 95-471 8-264 (313)
96 3ei3_B DNA damage-binding prot 99.8 2.6E-17 8.9E-22 179.1 30.6 222 95-473 63-293 (383)
97 3mkq_A Coatomer beta'-subunit; 99.8 7.1E-18 2.4E-22 201.0 28.2 253 97-472 5-269 (814)
98 3bws_A Protein LP49; two-domai 99.8 1.7E-16 5.8E-21 174.8 36.5 226 74-462 180-432 (433)
99 3dwl_C Actin-related protein 2 99.8 4.1E-19 1.4E-23 192.0 15.0 220 98-465 4-239 (377)
100 3jrp_A Fusion protein of prote 99.8 2.3E-17 7.9E-22 176.0 27.7 212 96-463 2-241 (379)
101 4e54_B DNA damage-binding prot 99.8 3E-18 1E-22 192.1 20.9 112 344-473 226-338 (435)
102 4gq1_A NUP37; propeller, trans 99.8 4.4E-18 1.5E-22 189.2 21.9 257 74-461 100-388 (393)
103 3bg1_A Protein SEC13 homolog; 99.8 6.4E-18 2.2E-22 181.8 22.0 209 97-462 5-247 (316)
104 4h5i_A Guanine nucleotide-exch 99.8 4E-17 1.4E-21 180.1 27.6 111 348-473 196-312 (365)
105 3k26_A Polycomb protein EED; W 99.8 4.7E-17 1.6E-21 172.8 27.1 262 55-400 68-365 (366)
106 2oaj_A Protein SNI1; WD40 repe 99.8 8.3E-17 2.9E-21 199.4 33.3 250 53-461 14-311 (902)
107 1yfq_A Cell cycle arrest prote 99.8 2.5E-17 8.6E-22 174.5 24.6 253 98-465 4-285 (342)
108 3v7d_B Cell division control p 99.8 1.4E-16 4.9E-21 177.7 31.7 274 53-461 159-462 (464)
109 3vu4_A KMHSV2; beta-propeller 99.8 3.1E-17 1E-21 179.9 23.7 117 343-464 211-338 (355)
110 3f3f_A Nucleoporin SEH1; struc 99.8 4.7E-16 1.6E-20 162.0 30.6 103 344-464 129-251 (351)
111 3dw8_B Serine/threonine-protei 99.7 3.9E-16 1.3E-20 171.9 25.7 103 343-462 193-315 (447)
112 4gga_A P55CDC, cell division c 99.7 5.6E-16 1.9E-20 172.6 27.3 235 53-401 144-395 (420)
113 4aez_A CDC20, WD repeat-contai 99.7 2.8E-16 9.6E-21 173.6 24.2 214 172-463 112-337 (401)
114 2j04_B YDR362CP, TAU91; beta p 99.7 5.5E-17 1.9E-21 190.0 19.1 113 342-473 280-397 (524)
115 4ggc_A P55CDC, cell division c 99.7 2.6E-15 8.8E-20 157.0 27.5 237 53-400 64-314 (318)
116 2xyi_A Probable histone-bindin 99.7 1.4E-15 4.9E-20 170.4 25.5 102 344-464 249-355 (430)
117 2vdu_B TRNA (guanine-N(7)-)-me 99.7 9.9E-15 3.4E-19 164.0 31.6 246 54-466 100-395 (450)
118 1pby_B Quinohemoprotein amine 99.7 2.5E-14 8.6E-19 150.4 31.5 279 77-464 3-312 (337)
119 3bws_A Protein LP49; two-domai 99.7 1.5E-14 5.1E-19 159.3 30.7 231 74-462 133-390 (433)
120 3mmy_A MRNA export factor; mRN 99.7 2.1E-15 7.1E-20 159.8 22.6 257 95-472 29-314 (368)
121 2hqs_A Protein TOLB; TOLB, PAL 99.7 2.4E-14 8.1E-19 161.1 30.8 235 75-473 144-397 (415)
122 2j04_A TAU60, YPL007P, hypothe 99.7 1.8E-15 6.2E-20 178.8 21.5 240 73-461 25-296 (588)
123 3jro_A Fusion protein of prote 99.7 4.1E-15 1.4E-19 179.9 25.1 210 98-464 2-240 (753)
124 3u4y_A Uncharacterized protein 99.7 1.7E-14 5.9E-19 153.0 26.8 271 75-462 10-304 (331)
125 2w18_A PALB2, fancn, partner a 99.7 5.5E-15 1.9E-19 165.6 23.2 56 343-399 299-355 (356)
126 3lrv_A PRE-mRNA-splicing facto 99.7 8.8E-15 3E-19 158.2 23.9 217 78-460 88-331 (343)
127 1nir_A Nitrite reductase; hemo 99.6 4.9E-14 1.7E-18 165.3 31.1 286 74-465 148-461 (543)
128 1l0q_A Surface layer protein; 99.6 2.7E-14 9.1E-19 155.1 26.7 212 172-463 11-234 (391)
129 4gq1_A NUP37; propeller, trans 99.6 1.3E-14 4.4E-19 161.3 23.5 225 52-400 132-388 (393)
130 1ri6_A Putative isomerase YBHE 99.6 8.4E-14 2.9E-18 146.7 27.3 276 76-465 6-311 (343)
131 2j04_A TAU60, YPL007P, hypothe 99.6 3.5E-14 1.2E-18 167.9 25.8 234 56-451 85-350 (588)
132 2ojh_A Uncharacterized protein 99.6 2.1E-13 7.1E-18 139.3 23.0 216 172-463 21-259 (297)
133 1nir_A Nitrite reductase; hemo 99.6 1E-12 3.5E-17 154.1 30.3 276 73-466 188-518 (543)
134 2hqs_A Protein TOLB; TOLB, PAL 99.5 8.4E-13 2.9E-17 148.5 26.8 94 348-462 246-344 (415)
135 2ecf_A Dipeptidyl peptidase IV 99.5 2.7E-13 9.3E-18 160.9 23.1 320 56-465 36-416 (741)
136 3vgz_A Uncharacterized protein 99.5 2.7E-11 9.3E-16 128.7 35.0 174 173-463 111-304 (353)
137 3scy_A Hypothetical bacterial 99.5 1E-11 3.5E-16 134.4 30.2 290 84-467 27-342 (361)
138 1xfd_A DIP, dipeptidyl aminope 99.5 3.5E-13 1.2E-17 159.2 19.4 333 73-465 26-396 (723)
139 3hfq_A Uncharacterized protein 99.5 1.1E-11 3.9E-16 133.0 29.5 105 347-467 207-322 (347)
140 2ojh_A Uncharacterized protein 99.5 1.1E-12 3.9E-17 133.8 19.6 246 84-453 22-293 (297)
141 1jmx_B Amine dehydrogenase; ox 99.5 1.3E-11 4.4E-16 130.7 26.5 88 353-463 237-326 (349)
142 2z3z_A Dipeptidyl aminopeptida 99.5 2.8E-12 9.7E-17 151.6 23.5 262 173-462 101-435 (706)
143 2ecf_A Dipeptidyl peptidase IV 99.4 5.2E-12 1.8E-16 149.9 19.0 243 173-465 64-370 (741)
144 3vgz_A Uncharacterized protein 99.4 3.9E-10 1.3E-14 119.8 30.7 222 74-453 99-335 (353)
145 1k32_A Tricorn protease; prote 99.4 3.5E-11 1.2E-15 150.4 25.5 258 76-461 215-501 (1045)
146 2oit_A Nucleoporin 214KDA; NH2 99.3 3.3E-11 1.1E-15 137.1 21.2 104 343-465 166-281 (434)
147 3u4y_A Uncharacterized protein 99.3 7E-10 2.4E-14 117.5 29.3 182 173-464 20-209 (331)
148 3hfq_A Uncharacterized protein 99.3 7.6E-10 2.6E-14 118.8 29.6 104 346-462 159-271 (347)
149 1jof_A Carboxy-CIS,CIS-muconat 99.3 2.5E-10 8.6E-15 125.0 25.5 78 371-463 255-342 (365)
150 1k32_A Tricorn protease; prote 99.3 2.1E-10 7.2E-15 143.4 26.8 95 347-462 356-461 (1045)
151 1ri6_A Putative isomerase YBHE 99.3 7.1E-10 2.4E-14 116.7 26.3 222 173-463 15-263 (343)
152 3o4h_A Acylamino-acid-releasin 99.3 7.5E-11 2.6E-15 136.9 20.0 91 349-460 175-274 (582)
153 1z68_A Fibroblast activation p 99.3 2E-11 7E-16 144.8 15.1 284 74-466 26-348 (719)
154 3pe7_A Oligogalacturonate lyas 99.2 3.4E-10 1.1E-14 122.7 21.7 97 349-463 264-383 (388)
155 2z3z_A Dipeptidyl aminopeptida 99.2 1.6E-10 5.3E-15 136.7 20.2 243 175-465 46-345 (706)
156 1xfd_A DIP, dipeptidyl aminope 99.2 8.7E-11 3E-15 138.8 17.2 246 172-461 36-341 (723)
157 1pby_B Quinohemoprotein amine 99.2 8.3E-10 2.8E-14 115.9 22.1 211 172-462 10-269 (337)
158 1jof_A Carboxy-CIS,CIS-muconat 99.2 2.8E-09 9.5E-14 116.7 26.9 102 348-462 166-291 (365)
159 2oit_A Nucleoporin 214KDA; NH2 99.1 9.1E-11 3.1E-15 133.5 10.3 98 344-461 113-222 (434)
160 4a5s_A Dipeptidyl peptidase 4 99.1 5.5E-10 1.9E-14 134.4 17.6 289 74-466 27-355 (740)
161 3o4h_A Acylamino-acid-releasin 99.1 6E-09 2.1E-13 120.9 22.7 86 350-462 219-313 (582)
162 1q7f_A NHL, brain tumor CG1071 99.1 4.3E-07 1.5E-11 94.8 34.2 96 347-462 183-280 (286)
163 1jmx_B Amine dehydrogenase; ox 99.1 1.9E-08 6.4E-13 106.4 23.5 57 172-228 20-82 (349)
164 3scy_A Hypothetical bacterial 99.0 1.7E-07 6E-12 101.1 29.1 53 348-401 281-337 (361)
165 3c5m_A Oligogalacturonate lyas 99.0 4.5E-08 1.6E-12 105.5 24.3 101 349-470 264-390 (396)
166 2oiz_A Aromatic amine dehydrog 99.0 2.3E-07 7.9E-12 102.6 29.0 96 346-463 218-335 (361)
167 1z68_A Fibroblast activation p 98.9 5E-09 1.7E-13 124.3 13.9 51 173-223 36-102 (719)
168 2gop_A Trilobed protease; beta 98.9 3.9E-07 1.3E-11 97.2 25.3 86 348-461 243-330 (347)
169 3dsm_A Uncharacterized protein 98.8 1.5E-06 5E-11 94.5 28.6 232 75-461 54-301 (328)
170 3azo_A Aminopeptidase; POP fam 98.8 1.8E-07 6E-12 109.8 22.8 99 349-465 217-326 (662)
171 3pe7_A Oligogalacturonate lyas 98.8 2.4E-07 8.3E-12 100.2 21.8 98 346-462 165-273 (388)
172 3fvz_A Peptidyl-glycine alpha- 98.8 1.8E-06 6.1E-11 93.4 28.3 99 346-462 215-322 (329)
173 3e5z_A Putative gluconolactona 98.7 3.5E-06 1.2E-10 88.7 26.9 90 347-463 191-285 (296)
174 4a5s_A Dipeptidyl peptidase 4 98.7 7.2E-08 2.4E-12 116.1 15.7 97 348-465 91-205 (740)
175 3c5m_A Oligogalacturonate lyas 98.7 2.3E-07 7.8E-12 100.0 18.1 98 346-462 165-273 (396)
176 2dg1_A DRP35, lactonase; beta 98.7 2.5E-05 8.7E-10 83.0 32.0 106 74-222 55-173 (333)
177 3azo_A Aminopeptidase; POP fam 98.6 1.2E-06 4.2E-11 102.6 20.5 97 350-466 266-371 (662)
178 1xip_A Nucleoporin NUP159; bet 98.6 7.3E-06 2.5E-10 93.1 25.4 81 345-449 142-231 (388)
179 3dsm_A Uncharacterized protein 98.6 9E-06 3.1E-10 88.2 24.6 178 173-462 64-253 (328)
180 3no2_A Uncharacterized protein 98.6 5.1E-05 1.8E-09 81.1 29.8 229 75-464 5-253 (276)
181 2xdw_A Prolyl endopeptidase; a 98.5 2.1E-05 7.1E-10 94.1 28.9 97 348-463 310-415 (710)
182 1pjx_A Dfpase, DIISOPROPYLFLUO 98.5 8.5E-05 2.9E-09 77.7 29.0 97 348-464 197-301 (314)
183 1qks_A Cytochrome CD1 nitrite 98.5 0.00014 4.8E-09 86.2 32.7 237 75-463 167-422 (567)
184 1q7f_A NHL, brain tumor CG1071 98.5 8.1E-05 2.8E-09 77.5 27.3 93 347-460 140-236 (286)
185 2dg1_A DRP35, lactonase; beta 98.4 0.00017 6E-09 76.5 27.8 101 348-460 161-261 (333)
186 1rwi_B Serine/threonine-protei 98.3 5.6E-05 1.9E-09 77.5 22.7 96 348-463 170-265 (270)
187 3fvz_A Peptidyl-glycine alpha- 98.3 0.00017 5.9E-09 77.8 27.4 53 347-400 266-321 (329)
188 1qks_A Cytochrome CD1 nitrite 98.3 8.8E-05 3E-09 87.9 25.5 182 172-463 176-374 (567)
189 3no2_A Uncharacterized protein 98.3 4.7E-05 1.6E-09 81.4 20.4 171 172-461 14-194 (276)
190 2xdw_A Prolyl endopeptidase; a 98.3 9.7E-05 3.3E-09 88.4 25.4 99 348-462 258-366 (710)
191 2gop_A Trilobed protease; beta 98.2 1.3E-05 4.5E-10 85.3 15.8 82 350-461 201-290 (347)
192 2mad_H Methylamine dehydrogena 98.2 0.00028 9.5E-09 78.9 26.8 98 347-464 232-352 (373)
193 2bkl_A Prolyl endopeptidase; m 98.2 2.5E-05 8.6E-10 93.3 18.2 97 347-462 293-397 (695)
194 2oiz_A Aromatic amine dehydrog 98.2 0.00024 8.2E-09 78.4 24.4 222 172-464 30-297 (361)
195 3sjl_D Methylamine dehydrogena 98.2 0.00073 2.5E-08 76.8 28.2 99 346-464 244-365 (386)
196 3e5z_A Putative gluconolactona 98.1 0.0013 4.4E-08 69.0 27.6 92 349-461 153-245 (296)
197 3c75_H MADH, methylamine dehyd 98.1 0.00057 2E-08 78.5 26.2 107 84-229 99-218 (426)
198 1yr2_A Prolyl oligopeptidase; 98.1 0.00028 9.4E-09 85.1 24.5 96 348-462 340-441 (741)
199 2ece_A 462AA long hypothetical 98.1 0.0013 4.3E-08 76.3 28.4 81 371-465 322-428 (462)
200 2z2n_A Virginiamycin B lyase; 98.1 0.011 3.8E-07 60.7 32.6 92 348-460 161-253 (299)
201 2ghs_A AGR_C_1268P; regucalcin 98.0 0.0065 2.2E-07 65.6 31.8 85 348-453 200-293 (326)
202 3g4e_A Regucalcin; six bladed 98.0 0.0043 1.5E-07 65.8 29.2 86 348-453 170-263 (297)
203 3hrp_A Uncharacterized protein 98.0 0.0029 9.8E-08 71.4 29.1 73 371-461 324-409 (409)
204 1mda_H Methylamine dehydrogena 97.9 0.00042 1.5E-08 78.0 20.8 250 174-465 47-349 (368)
205 2qe8_A Uncharacterized protein 97.8 0.0016 5.4E-08 70.8 22.8 57 173-229 93-163 (343)
206 1yr2_A Prolyl oligopeptidase; 97.8 0.0016 5.6E-08 78.4 24.7 99 348-465 293-396 (741)
207 1xip_A Nucleoporin NUP159; bet 97.8 0.00028 9.6E-09 80.1 15.6 89 347-463 104-192 (388)
208 3iuj_A Prolyl endopeptidase; h 97.7 0.01 3.5E-07 71.1 28.1 94 348-462 304-405 (693)
209 3g4e_A Regucalcin; six bladed 97.6 0.016 5.3E-07 61.5 25.7 50 173-223 35-85 (297)
210 2z2n_A Virginiamycin B lyase; 97.6 0.08 2.7E-06 54.2 33.1 91 348-461 203-294 (299)
211 2qc5_A Streptogramin B lactona 97.5 0.11 3.9E-06 53.0 32.2 92 348-460 166-258 (300)
212 1rwi_B Serine/threonine-protei 97.4 0.0035 1.2E-07 64.1 16.8 94 348-461 128-221 (270)
213 3hrp_A Uncharacterized protein 97.4 0.08 2.7E-06 59.6 28.2 96 347-461 238-353 (409)
214 2bkl_A Prolyl endopeptidase; m 97.4 0.00059 2E-08 81.5 11.4 115 331-462 128-259 (695)
215 1kb0_A Quinohemoprotein alcoho 97.3 0.03 1E-06 67.5 25.6 42 420-464 468-509 (677)
216 3dr2_A Exported gluconolactona 97.3 0.039 1.3E-06 58.5 23.8 85 349-457 215-302 (305)
217 3sjl_D Methylamine dehydrogena 97.3 0.00067 2.3E-08 77.0 10.5 98 348-464 58-171 (386)
218 2qc5_A Streptogramin B lactona 97.3 0.21 7.2E-06 51.0 29.7 90 348-460 208-298 (300)
219 2iwa_A Glutamine cyclotransfer 97.3 0.099 3.4E-06 56.4 26.6 174 173-463 44-238 (266)
220 3nol_A Glutamine cyclotransfer 97.3 0.032 1.1E-06 60.2 22.5 172 173-461 65-253 (262)
221 1pjx_A Dfpase, DIISOPROPYLFLUO 97.2 0.032 1.1E-06 58.0 21.4 100 348-461 152-255 (314)
222 2hz6_A Endoplasmic reticulum t 97.2 0.00017 5.7E-09 80.1 3.9 91 346-462 99-192 (369)
223 2ghs_A AGR_C_1268P; regucalcin 97.1 0.11 3.8E-06 55.9 25.6 97 349-460 161-258 (326)
224 2mad_H Methylamine dehydrogena 97.1 0.0034 1.2E-07 70.1 13.8 94 350-463 48-157 (373)
225 2ece_A 462AA long hypothetical 97.1 0.026 8.7E-07 65.5 20.9 100 346-462 161-289 (462)
226 3nok_A Glutaminyl cyclase; bet 97.1 0.025 8.4E-07 61.3 19.2 56 173-229 75-134 (268)
227 3c75_H MADH, methylamine dehyd 97.1 0.0099 3.4E-07 68.2 17.1 56 173-229 99-167 (426)
228 3mbr_X Glutamine cyclotransfer 97.0 0.12 3.9E-06 55.3 23.2 56 173-228 43-102 (243)
229 1mda_H Methylamine dehydrogena 96.9 0.0014 4.7E-08 73.8 7.9 94 350-462 47-158 (368)
230 3hxj_A Pyrrolo-quinoline quino 96.6 0.1 3.5E-06 54.6 19.4 92 348-463 234-325 (330)
231 1fwx_A Nitrous oxide reductase 96.6 0.13 4.6E-06 61.3 21.7 220 173-462 112-361 (595)
232 2hz6_A Endoplasmic reticulum t 96.5 0.0019 6.5E-08 71.6 5.2 54 172-228 58-119 (369)
233 3nok_A Glutaminyl cyclase; bet 96.3 0.57 2E-05 50.7 23.2 57 173-229 116-173 (268)
234 2iwa_A Glutamine cyclotransfer 96.3 0.41 1.4E-05 51.5 22.0 95 346-462 83-181 (266)
235 3q7m_A Lipoprotein YFGL, BAMB; 96.3 1.6 5.5E-05 47.1 27.0 89 347-459 285-375 (376)
236 3nol_A Glutamine cyclotransfer 96.2 0.46 1.6E-05 51.2 21.8 57 173-229 107-164 (262)
237 1kb0_A Quinohemoprotein alcoho 96.1 0.19 6.6E-06 60.5 20.3 57 173-229 87-156 (677)
238 3iuj_A Prolyl endopeptidase; h 96.1 0.025 8.6E-07 67.7 12.2 115 332-463 137-269 (693)
239 1fwx_A Nitrous oxide reductase 96.0 0.31 1E-05 58.3 20.7 99 344-451 294-407 (595)
240 1yiq_A Quinohemoprotein alcoho 95.9 0.42 1.4E-05 57.7 21.6 57 173-229 80-149 (689)
241 2qe8_A Uncharacterized protein 95.9 0.066 2.2E-06 58.0 13.2 114 348-462 92-224 (343)
242 1yiq_A Quinohemoprotein alcoho 95.7 0.57 2E-05 56.5 22.0 29 435-463 478-506 (689)
243 3q7m_A Lipoprotein YFGL, BAMB; 95.6 3.2 0.00011 44.7 32.2 93 345-462 245-337 (376)
244 1kv9_A Type II quinohemoprotei 95.5 0.89 3E-05 54.5 22.4 57 173-229 76-145 (668)
245 3amr_A 3-phytase; beta-propell 95.5 1.4 4.7E-05 49.6 22.2 101 347-461 151-262 (355)
246 2ad6_A Methanol dehydrogenase 94.9 1.4 4.9E-05 51.8 21.3 26 438-463 470-495 (571)
247 3hxj_A Pyrrolo-quinoline quino 94.7 0.27 9.3E-06 51.4 13.0 87 347-459 155-241 (330)
248 3dr2_A Exported gluconolactona 94.6 0.18 6.1E-06 53.4 11.6 103 345-466 63-180 (305)
249 2xzh_A Clathrin heavy chain 1; 94.6 7.6 0.00026 43.6 26.3 48 173-220 87-135 (365)
250 3mbr_X Glutamine cyclotransfer 94.2 6.8 0.00023 41.7 27.2 57 173-229 85-142 (243)
251 1kv9_A Type II quinohemoprotei 94.1 1.7 5.7E-05 52.2 19.8 84 346-451 435-521 (668)
252 1bpo_A Protein (clathrin); cla 94.0 7.6 0.00026 45.1 23.6 195 173-464 86-291 (494)
253 1flg_A Protein (quinoprotein e 93.0 2.3 7.9E-05 50.3 18.1 83 347-451 464-549 (582)
254 2ad6_A Methanol dehydrogenase 92.7 8.9 0.0003 45.1 22.4 59 172-230 124-195 (571)
255 1npe_A Nidogen, entactin; glyc 92.2 11 0.00039 38.4 32.5 70 371-462 168-238 (267)
256 1ijq_A LDL receptor, low-densi 91.9 15 0.00051 39.2 27.4 95 348-461 98-194 (316)
257 2xe4_A Oligopeptidase B; hydro 91.5 0.48 1.6E-05 57.5 10.1 111 333-462 184-304 (751)
258 2fp8_A Strictosidine synthase; 90.9 18 0.00061 38.2 26.2 74 372-462 231-313 (322)
259 1w6s_A Methanol dehydrogenase 90.2 16 0.00054 43.5 21.2 23 441-463 482-504 (599)
260 1npe_A Nidogen, entactin; glyc 89.9 5.3 0.00018 40.9 14.9 96 347-461 56-154 (267)
261 1k3i_A Galactose oxidase precu 89.8 8.9 0.0003 45.4 18.7 50 173-222 265-325 (656)
262 3p5b_L Low density lipoprotein 89.5 30 0.001 38.5 23.8 95 348-461 180-276 (400)
263 3v65_B Low-density lipoprotein 89.5 29 0.00098 38.3 23.3 93 350-461 182-276 (386)
264 3v64_C Agrin; beta propeller, 88.3 32 0.0011 37.4 24.0 93 349-461 138-233 (349)
265 1flg_A Protein (quinoprotein e 87.1 53 0.0018 38.6 23.3 56 174-229 79-145 (582)
266 2xzh_A Clathrin heavy chain 1; 86.2 18 0.00061 40.7 16.6 194 348-586 86-290 (365)
267 3pbp_A Nucleoporin NUP82; beta 86.2 6.1 0.00021 45.6 13.4 109 347-462 39-158 (452)
268 2p4o_A Hypothetical protein; p 86.0 4.4 0.00015 42.8 11.5 81 359-462 22-102 (306)
269 1bpo_A Protein (clathrin); cla 85.4 19 0.00065 41.9 16.8 195 348-586 85-289 (494)
270 3ei3_A DNA damage-binding prot 84.9 38 0.0013 43.5 21.3 95 349-462 904-999 (1158)
271 3ei3_A DNA damage-binding prot 83.5 27 0.00092 44.9 19.0 92 349-462 492-591 (1158)
272 3m0c_C LDL receptor, low-densi 82.7 1E+02 0.0034 38.0 25.2 95 347-460 491-587 (791)
273 3sre_A PON1, serum paraoxonase 81.9 4.7 0.00016 45.1 9.9 97 348-464 138-254 (355)
274 1xi4_A Clathrin heavy chain; a 81.9 11 0.00039 49.4 14.4 48 173-220 86-134 (1630)
275 3tc9_A Hypothetical hydrolase; 81.4 36 0.0012 38.2 17.2 72 372-462 228-301 (430)
276 3tc9_A Hypothetical hydrolase; 80.7 67 0.0023 36.1 19.1 54 347-400 246-300 (430)
277 4hw6_A Hypothetical protein, I 80.7 80 0.0027 35.5 22.2 54 347-400 248-303 (433)
278 1w6s_A Methanol dehydrogenase 80.6 97 0.0033 36.7 21.2 56 173-228 73-148 (599)
279 2fp8_A Strictosidine synthase; 80.4 22 0.00074 37.5 14.2 87 346-451 162-248 (322)
280 2p9w_A MAL S 1 allergenic prot 79.7 7.2 0.00025 43.4 10.3 99 347-461 98-214 (334)
281 2xe4_A Oligopeptidase B; hydro 79.0 2.1 7.3E-05 51.9 6.4 66 367-453 170-242 (751)
282 3qqz_A Putative uncharacterize 78.9 22 0.00077 37.7 13.6 101 345-461 45-150 (255)
283 2p4o_A Hypothetical protein; p 77.5 13 0.00043 39.2 11.2 83 347-453 187-279 (306)
284 4a2l_A BT_4663, two-component 76.7 1.3E+02 0.0046 35.9 35.7 94 347-461 375-479 (795)
285 1n7d_A LDL receptor, low-densi 75.4 16 0.00055 44.1 12.6 53 348-400 518-570 (699)
286 4a2l_A BT_4663, two-component 74.5 1.5E+02 0.0052 35.5 32.7 92 347-461 425-525 (795)
287 3qqz_A Putative uncharacterize 74.4 92 0.0032 32.9 28.9 73 370-459 173-250 (255)
288 3kya_A Putative phosphatase; s 72.9 99 0.0034 36.1 17.9 29 371-399 311-339 (496)
289 3das_A Putative oxidoreductase 72.3 1.2E+02 0.004 33.7 17.7 78 371-461 141-232 (347)
290 3sov_A LRP-6, low-density lipo 69.6 1.2E+02 0.0043 32.4 22.2 95 348-461 100-196 (318)
291 3amr_A 3-phytase; beta-propell 69.2 18 0.00062 40.6 10.2 99 346-463 47-163 (355)
292 3s94_A LRP-6, low-density lipo 69.2 1.6E+02 0.0055 34.8 19.1 178 173-465 18-203 (619)
293 1k3i_A Galactose oxidase precu 67.9 17 0.00057 43.1 10.2 93 350-462 220-323 (656)
294 3zwu_A Alkaline phosphatase PH 67.0 13 0.00046 44.3 9.1 61 373-449 479-548 (592)
295 3q6k_A 43.2 kDa salivary prote 61.9 82 0.0028 35.5 13.8 109 349-462 123-253 (381)
296 3v65_B Low-density lipoprotein 61.6 1.9E+02 0.0065 31.6 30.7 91 349-459 225-315 (386)
297 4a9v_A PHOX; hydrolase, beta-p 59.8 18 0.00062 43.1 8.3 61 372-449 478-548 (592)
298 2p9w_A MAL S 1 allergenic prot 59.3 62 0.0021 35.9 12.0 106 346-465 32-169 (334)
299 3v9f_A Two-component system se 53.9 3.4E+02 0.012 32.3 27.7 91 349-460 469-566 (781)
300 1xi4_A Clathrin heavy chain; a 52.5 69 0.0024 42.3 12.3 106 348-473 85-198 (1630)
301 1cru_A Protein (soluble quinop 49.9 77 0.0026 36.1 11.3 63 372-450 29-98 (454)
302 4a0p_A LRP6, LRP-6, low-densit 48.1 4.1E+02 0.014 31.4 23.1 173 173-461 15-196 (628)
303 3p5b_L Low density lipoprotein 47.4 3.2E+02 0.011 30.0 32.8 51 350-400 226-276 (400)
304 3v64_C Agrin; beta propeller, 47.4 3E+02 0.01 29.6 31.0 30 371-400 204-233 (349)
305 3sre_A PON1, serum paraoxonase 45.0 54 0.0019 36.4 8.7 63 371-450 222-285 (355)
306 3a9g_A Putative uncharacterize 43.9 89 0.0031 34.1 10.2 92 347-451 47-154 (354)
307 2ism_A Putative oxidoreductase 43.8 83 0.0028 34.1 9.9 89 347-451 49-154 (352)
308 2xbg_A YCF48-like protein; pho 42.3 2.2E+02 0.0074 30.3 12.8 72 367-459 160-231 (327)
309 3m0c_C LDL receptor, low-densi 41.0 5.8E+02 0.02 31.2 33.1 52 349-400 537-588 (791)
310 2ism_A Putative oxidoreductase 40.5 1.1E+02 0.0039 33.1 10.4 69 372-461 33-113 (352)
311 3pbp_A Nucleoporin NUP82; beta 40.4 1.1E+02 0.0037 35.4 10.3 77 368-463 123-211 (452)
312 1n7d_A LDL receptor, low-densi 39.8 34 0.0012 41.3 6.5 95 347-461 473-570 (699)
313 3sov_A LRP-6, low-density lipo 39.2 3.8E+02 0.013 28.5 30.6 70 372-461 168-237 (318)
314 4hw6_A Hypothetical protein, I 37.6 95 0.0033 34.9 9.4 72 373-463 231-305 (433)
315 1ijq_A LDL receptor, low-densi 37.1 3.9E+02 0.013 28.0 32.4 73 370-460 164-236 (316)
316 2g8s_A Glucose/sorbosone dehyd 36.4 1.1E+02 0.0038 33.2 9.4 109 345-467 35-176 (353)
317 3das_A Putative oxidoreductase 35.9 1.8E+02 0.0062 32.1 11.1 29 370-399 32-60 (347)
318 2xbg_A YCF48-like protein; pho 35.5 79 0.0027 33.7 8.0 92 347-459 223-319 (327)
319 3kya_A Putative phosphatase; s 32.6 1.2E+02 0.0042 35.3 9.4 65 371-453 140-214 (496)
320 3a9g_A Putative uncharacterize 31.5 1.5E+02 0.0053 32.2 9.6 59 371-450 30-94 (354)
321 3v9f_A Two-component system se 31.4 7.2E+02 0.025 29.4 31.8 91 348-461 382-477 (781)
322 1cru_A Protein (soluble quinop 31.3 1.4E+02 0.0047 34.0 9.4 84 371-462 145-259 (454)
323 2wg3_C Hedgehog-interacting pr 28.5 4.7E+02 0.016 29.8 13.3 101 346-453 33-160 (463)
324 3s25_A Hypothetical 7-bladed b 25.3 6.3E+02 0.022 26.8 17.7 69 375-466 189-257 (302)
325 3s25_A Hypothetical 7-bladed b 24.1 1.8E+02 0.0061 31.2 8.2 94 347-468 127-220 (302)
326 1tl2_A L10, protein (tachylect 23.4 1.9E+02 0.0065 30.6 8.0 65 373-454 91-155 (236)
327 1tl2_A L10, protein (tachylect 20.1 2.9E+02 0.0098 29.3 8.5 75 370-463 135-209 (236)
No 1
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2e-28 Score=268.70 Aligned_cols=241 Identities=20% Similarity=0.250 Sum_probs=187.7
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
...|++.|..+.|.. ++++|++|.++|++|||++. ...+...+.+.+..+.+.+.+ .
T Consensus 15 ~~~h~~~V~~v~fs~-------dg~~la~g~~~~~~iw~~~~---~~~~~~~~~~~~~~~~~~~~~-------------~ 71 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQ-------DQSCLILSTLKSFEIYNVHP---VAHIMSQEMRHLSKVRMLHRT-------------N 71 (355)
T ss_dssp ----CCCCCEEEECT-------TSSEEEEECSSEEEEEEETT---EEEEEEEECSCCCEEEECTTS-------------S
T ss_pred cccCCCceEEEEECC-------CCCEEEEEcCCEEEEEecCC---cceeeeeecCCeEEEEEcCCC-------------C
Confidence 366889999999973 67899999999999999864 344444554568888888543 3
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEeCC
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLAT 211 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~~iLAVgl~~ 211 (994)
++++++++ +++|+|||+++++++.++.+++.|.+++++++.++++.++
T Consensus 72 ~~~~~~~~--------------------------------d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~ 119 (355)
T 3vu4_A 72 YVAFVTGV--------------------------------KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGD 119 (355)
T ss_dssp EEEEECSS--------------------------------TTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETT
T ss_pred EEEEEECC--------------------------------ccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcC
Confidence 66664321 3689999999999999999999999999999999999999
Q ss_pred eEEEEECCCC-ceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCC
Q 001935 212 QIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGG 290 (994)
Q Consensus 212 ~I~IwDa~Tl-e~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~ 290 (994)
.|++||+.+. +.+.++.+ + .+.+++++.+||++
T Consensus 120 ~i~i~d~~~~~~~~~~~~~---~-------------~~~~~~s~~~la~~------------------------------ 153 (355)
T 3vu4_A 120 VISVFKFGNPWKRITDDIR---F-------------GGVCEFSNGLLVYS------------------------------ 153 (355)
T ss_dssp EEEEEESSTTCCBSSCCEE---E-------------EEEEEEETTEEEEE------------------------------
T ss_pred EEEEEECCCCceeeEEecc---C-------------CceEEEEccEEEEe------------------------------
Confidence 9999999987 55544332 1 12334433333332
Q ss_pred CceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc----------
Q 001935 291 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---------- 360 (994)
Q Consensus 291 gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~---------- 360 (994)
++..+|.|+|||+.+++
T Consensus 154 -----------------------------------------------------sg~~~g~v~iwd~~~~~~~~~~~~~~~ 180 (355)
T 3vu4_A 154 -----------------------------------------------------NEFNLGQIHITKLQSSGSATTQDQGVQ 180 (355)
T ss_dssp -----------------------------------------------------ESSCTTCEEEEECCC------------
T ss_pred -----------------------------------------------------CCCcCcEEEEEECCCCCcccccccccc
Confidence 13467889999998765
Q ss_pred ------EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccE
Q 001935 361 ------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI 434 (994)
Q Consensus 361 ------~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I 434 (994)
.+..+.+|..+|.+|+|+|+|++|||++.||+.|+|||+.. | .+++++.+|.+...|
T Consensus 181 ~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~-------~----------~~~~~~~~g~h~~~v 243 (355)
T 3vu4_A 181 QKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED-------G----------VLVREFRRGLDRADV 243 (355)
T ss_dssp ------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT-------C----------CEEEEEECTTCCSCE
T ss_pred ccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC-------C----------cEEEEEEcCCCCCcE
Confidence 27889999999999999999999999999776699999864 3 578888878566789
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 435 QDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 435 ~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
++++|+||+++||+++.|++|+||++...
T Consensus 244 ~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 244 VDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 99999999999999999999999999764
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.95 E-value=1.7e-25 Score=242.58 Aligned_cols=283 Identities=12% Similarity=0.148 Sum_probs=204.9
Q ss_pred CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcc--eEeeeeccCCEEEEEEecCCCCCCCCCCcc
Q 001935 51 ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF--NELVSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (994)
Q Consensus 51 ~~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v--~ells~hdGpV~~v~~lP~p~~s~~~D~F~ 127 (994)
...+|++.|..+.|..-. ..+..+|++|..+| ++|||+.. +.+ ...+.+|.+.|.++.+.|+.
T Consensus 27 ~~~~H~~~V~~v~~~~~~---~~~~~~l~tgs~D~~v~vW~~~~-~~~~~~~~l~gh~~~v~~~~~~~~~---------- 92 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNK---KENSETVVTGSLDDLVKVWKWRD-ERLDLQWSLEGHQLGVVSVDISHTL---------- 92 (321)
T ss_dssp ETTSSSSCEEEEEEC----------CEEEEEETTSCEEEEEEET-TEEEEEEEECCCSSCEEEEEECSSS----------
T ss_pred ecccCCCcEEEEEEecCC---CCCCCEEEEEcCCCCEEEEECCC-CCeeeeeeeccCCCCEEEEEECCCC----------
Confidence 356799999999996411 12345777777665 99999954 322 33577899999999988654
Q ss_pred ccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--Ce
Q 001935 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RI 204 (994)
Q Consensus 128 ~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--~i 204 (994)
++++..+ .+++|++||+++++++..+..+ ..|..+++++ ++
T Consensus 93 ---~~l~s~s---------------------------------~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~ 136 (321)
T 3ow8_A 93 ---PIAASSS---------------------------------LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY 136 (321)
T ss_dssp ---SEEEEEE---------------------------------TTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSE
T ss_pred ---CEEEEEe---------------------------------CCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCE
Confidence 4666422 2478999999999999998754 5788899988 57
Q ss_pred EEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccC--CeeeccCCccCCCcCCC
Q 001935 205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTP 279 (994)
Q Consensus 205 LAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~--~~~iwd~G~~s~qsltp 279 (994)
|+++. ++.|++||+.+.+...++..+..+ ...+++++ ++||.++. .+.+|+...
T Consensus 137 l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~-------------v~~~~~spdg~~lasg~~dg~i~iwd~~~-------- 195 (321)
T 3ow8_A 137 LATGTHVGKVNIFGVESGKKEYSLDTRGKF-------------ILSIAYSPDGKYLASGAIDGIINIFDIAT-------- 195 (321)
T ss_dssp EEEECTTSEEEEEETTTCSEEEEEECSSSC-------------EEEEEECTTSSEEEEEETTSCEEEEETTT--------
T ss_pred EEEEcCCCcEEEEEcCCCceeEEecCCCce-------------EEEEEECCCCCEEEEEcCCCeEEEEECCC--------
Confidence 77766 568999999999988887765431 23467777 78887654 466786310
Q ss_pred CCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 001935 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (994)
Q Consensus 280 ~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~ 359 (994)
+.++ +++..+. .....+.+++..+ .+++++.||.|+|||+.++
T Consensus 196 -----------~~~~----------------~~~~~h~------~~v~~l~~spd~~----~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 196 -----------GKLL----------------HTLEGHA------MPIRSLTFSPDSQ----LLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp -----------TEEE----------------EEECCCS------SCCCEEEECTTSC----EEEEECTTSCEEEEETTTC
T ss_pred -----------CcEE----------------EEEcccC------CceeEEEEcCCCC----EEEEEcCCCeEEEEECCCc
Confidence 1111 1111110 0011122333333 2457789999999999999
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 001935 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (994)
Q Consensus 360 ~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaF 439 (994)
+.+..+.+|..+|.+|+|+|+|++||+++.||+ |+|||+.. + .++.++. + +...|++++|
T Consensus 239 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~-------~----------~~~~~~~-~-h~~~v~~v~~ 298 (321)
T 3ow8_A 239 NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGT-------R----------TCVHTFF-D-HQDQVWGVKY 298 (321)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEEC-C-CSSCEEEEEE
T ss_pred ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCC-------C----------EEEEEEc-C-CCCcEEEEEE
Confidence 999999999999999999999999999999776 99999853 2 5677764 4 3467999999
Q ss_pred ccCCCEEEEEeCCCeEEEEecC
Q 001935 440 SHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 440 SpDg~~LAsgS~dGTVhIw~I~ 461 (994)
+||+++|++++.||+|+||++.
T Consensus 299 s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 299 NGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999963
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.95 E-value=9.5e-26 Score=252.18 Aligned_cols=292 Identities=13% Similarity=0.114 Sum_probs=204.9
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
.+|++.|..+.|.. +..+|++|..+| ++|||++ .+++...+..|.++|.++.+.|++ .
T Consensus 105 ~gh~~~V~~~~~~p-------~~~~l~s~s~Dg~i~vwd~~-~~~~~~~l~~h~~~V~~v~~~~~~-------------~ 163 (410)
T 1vyh_C 105 SGHRSPVTRVIFHP-------VFSVMVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDHSG-------------K 163 (410)
T ss_dssp ECCSSCEEEEEECS-------SSSEEEEEESSSCEEEEETT-TCCCCEEECCCSSCEEEEEECTTS-------------S
T ss_pred cccCCcEEEEEEcC-------CCCEEEEEeCCCeEEEEECC-CCcEEEEEeccCCcEEEEEEcCCC-------------C
Confidence 46888899998863 456788887766 9999995 577888899999999999998764 3
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEE
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVG 208 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--~iLAVg 208 (994)
+|+..+ .+++|+|||+++++++.++..+ ..|.++++++ +.|+++
T Consensus 164 ~l~sgs---------------------------------~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~ 210 (410)
T 1vyh_C 164 LLASCS---------------------------------ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA 210 (410)
T ss_dssp EEEEEE---------------------------------TTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEE
T ss_pred EEEEEe---------------------------------CCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 666532 1368999999999999988654 6899999987 466665
Q ss_pred e-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccC--CeeeccCCc--c--CCCcCCC
Q 001935 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGR--L--SPQNLTP 279 (994)
Q Consensus 209 l-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~--~~~iwd~G~--~--s~qsltp 279 (994)
. ++.|++||+.+.+++.++..|..+ ...+++.+ ++||.++. .+.+|+... . .......
T Consensus 211 s~D~~i~~wd~~~~~~~~~~~~h~~~-------------v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~ 277 (410)
T 1vyh_C 211 SRDKTIKMWEVQTGYCVKTFTGHREW-------------VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277 (410)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred eCCCeEEEEECCCCcEEEEEeCCCcc-------------EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCc
Confidence 4 668999999999998888776542 23355555 67776653 577887411 1 0000111
Q ss_pred CCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 001935 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (994)
Q Consensus 280 ~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~ 359 (994)
++....++|++.... +.. ..+.... .. .. .+..+++++.||.|+|||+.++
T Consensus 278 ~v~~~~~~~~~~~~~------------------~~~------~~~~~~~-~~---~~-~g~~l~sgs~D~~i~iwd~~~~ 328 (410)
T 1vyh_C 278 VVECISWAPESSYSS------------------ISE------ATGSETK-KS---GK-PGPFLLSGSRDKTIKMWDVSTG 328 (410)
T ss_dssp CEEEEEECCSCGGGG------------------GGG------CCSCC------------CCEEEEEETTSEEEEEETTTT
T ss_pred eEEEEEEcCcccccc------------------hhh------hcccccc-cc---CC-CCCEEEEEeCCCeEEEEECCCC
Confidence 111112222111000 000 0000000 00 00 0113457889999999999999
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 001935 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (994)
Q Consensus 360 ~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaF 439 (994)
.++..+.+|..+|.+|+|+|+|++|+|++.||+ |+|||+.. + .++.++. + +...|++++|
T Consensus 329 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i~vwd~~~-------~----------~~~~~~~-~-h~~~v~~l~~ 388 (410)
T 1vyh_C 329 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKN-------K----------RCMKTLN-A-HEHFVTSLDF 388 (410)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTT-------S----------CCCEEEE-C-CSSCEEEEEE
T ss_pred ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCC-------C----------ceEEEEc-C-CCCcEEEEEE
Confidence 999999999999999999999999999999665 99999853 2 3455553 4 3457999999
Q ss_pred ccCCCEEEEEeCCCeEEEEec
Q 001935 440 SHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 440 SpDg~~LAsgS~dGTVhIw~I 460 (994)
+|++++|+++|.||+|+||++
T Consensus 389 ~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 389 HKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CSSSSCEEEEETTSEEEEEC-
T ss_pred cCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999986
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.94 E-value=1.9e-25 Score=246.09 Aligned_cols=280 Identities=15% Similarity=0.091 Sum_probs=190.2
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEcc----------CCCcceEeeeeccCCEEEEEEecCCCCCCCC
Q 001935 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVE----------DASNFNELVSKRDGPVSFLQMQPFPVKDDGC 123 (994)
Q Consensus 54 ~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~----------~~g~v~ells~hdGpV~~v~~lP~p~~s~~~ 123 (994)
.+...|..+.|. +++++|+.|.+..+++||.. .........-.++.+|..++|.|+.
T Consensus 28 ~~~~~v~~~~fs-------~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~------ 94 (344)
T 4gqb_B 28 CMERQLEAARYR-------SDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER------ 94 (344)
T ss_dssp SCCSEEEEEEEC-------TTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT------
T ss_pred cccCCEEEEEEC-------CCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC------
Confidence 356678999996 36788998888778888742 0111112223356789999999764
Q ss_pred CCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-----CCCcEEEE
Q 001935 124 EGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-----FRSSVCMV 198 (994)
Q Consensus 124 D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~-----f~S~V~sV 198 (994)
.|++.+ .+++|+|||+++++.+.+++ +...|.+|
T Consensus 95 --------~l~~~s---------------------------------~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v 133 (344)
T 4gqb_B 95 --------GILVAS---------------------------------DSGAVELWELDENETLIVSKFCKYEHDDIVSTV 133 (344)
T ss_dssp --------EEEEEE---------------------------------TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEE
T ss_pred --------eEEEEE---------------------------------CCCEEEEEeccCCCceeEeeccccCCCCCEEEE
Confidence 344322 13789999999998766553 45689999
Q ss_pred EecC--CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc---cEEEEcc--CCeeeccCC
Q 001935 199 RCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYAS--NTLLLSNSG 270 (994)
Q Consensus 199 ~~S~--~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp---RwLAyas--~~~~iwd~G 270 (994)
+|++ ++|+++. ++.|++||+.+.+.+.++..|..+ ...+++.+ +.|+.++ ..+.+|+..
T Consensus 134 ~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~-------------V~~~~~~~~~~~~l~s~s~D~~v~iwd~~ 200 (344)
T 4gqb_B 134 SVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ-------------VTCVAASPHKDSVFLSCSEDNRILLWDTR 200 (344)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc-------------eEEEEecCCCCCceeeecccccccccccc
Confidence 9988 5777765 557999999999999988877552 23466655 4566554 357889741
Q ss_pred ccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCe
Q 001935 271 RLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI 350 (994)
Q Consensus 271 ~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~ 350 (994)
.. + .+..+.. -..+ .....+.+++.. ...+++++.||.
T Consensus 201 ~~--~-----------------~~~~~~~-----~~~~---------------~~~~~~~~~p~~---~~~l~sg~~dg~ 238 (344)
T 4gqb_B 201 CP--K-----------------PASQIGC-----SAPG---------------YLPTSLAWHPQQ---SEVFVFGDENGT 238 (344)
T ss_dssp SS--S-----------------CEEECC---------C---------------CCEEEEEECSSC---TTEEEEEETTSE
T ss_pred cc--c-----------------eeeeeec-----ceee---------------ccceeeeecCCC---CcceEEeccCCc
Confidence 10 0 0000000 0000 000001111111 112356788999
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc
Q 001935 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI 429 (994)
Q Consensus 351 V~VwDl~s~~~i~~~~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~ 429 (994)
|+|||+.+++.+..|.+|..+|.+|+|+|+| ++|||+|.||+ |+|||+.. + .++++ +||
T Consensus 239 v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~-------~-----------~~~~~-~~H 298 (344)
T 4gqb_B 239 VSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSL-------S-----------ELFRS-QAH 298 (344)
T ss_dssp EEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTC-------C-----------EEEEE-CCC
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCC-------C-----------cEEEE-cCC
Confidence 9999999999999999999999999999998 58999999776 99999853 2 44555 464
Q ss_pred ccccEEEEEEccCCC-EEEEEeCCCeEEEEecCCC
Q 001935 430 TSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 430 t~a~I~sIaFSpDg~-~LAsgS~dGTVhIw~I~~~ 463 (994)
...|++|+||||++ .|+++|.||+|++|++...
T Consensus 299 -~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 299 -RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp -SSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred -CCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 46799999999987 5778999999999999753
No 5
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.94 E-value=7.3e-25 Score=240.96 Aligned_cols=284 Identities=12% Similarity=0.060 Sum_probs=184.5
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEec------Cc-EEEEEccCCCc---ceEeeeeccCCEEEEEEecCCCCCCC
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ------NG-FQVLDVEDASN---FNELVSKRDGPVSFLQMQPFPVKDDG 122 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~------~G-~qVWDv~~~g~---v~ells~hdGpV~~v~~lP~p~~s~~ 122 (994)
..|...|..+.|. +++++|++|.. +| +++|+...... +......|.+.|.+++|.|+.
T Consensus 39 ~~H~~~V~~v~fS-------pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~----- 106 (357)
T 4g56_B 39 ACMEVQIGAVRYR-------RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK----- 106 (357)
T ss_dssp -CCCSEEEEEEEC-------SSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-----
T ss_pred ccccCCEEEEEEC-------CCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-----
Confidence 4588999999996 47789999876 33 78887743221 222334578889999999864
Q ss_pred CCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-----CCCcEEE
Q 001935 123 CEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-----FRSSVCM 197 (994)
Q Consensus 123 ~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~-----f~S~V~s 197 (994)
.+ ++.+. +++|+|||+.+++.+...+ +...|.+
T Consensus 107 --------~~-l~~s~---------------------------------dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~ 144 (357)
T 4g56_B 107 --------GI-LVASD---------------------------------SGAVELWEILEKESLLVNKFAKYEHDDIVKT 144 (357)
T ss_dssp --------EE-EEEET---------------------------------TSCEEEC--------CCCCEEECCCSSCEEE
T ss_pred --------CE-EEEEC---------------------------------CCEEEEeeccccceeEEEeeccCCCCCCEEE
Confidence 23 33221 3579999999988654432 3468999
Q ss_pred EEecC--CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc---cEEEEcc--CCeeeccC
Q 001935 198 VRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYAS--NTLLLSNS 269 (994)
Q Consensus 198 V~~S~--~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp---RwLAyas--~~~~iwd~ 269 (994)
|++++ ++|+++. ++.|++||+.+.+.+..+..|..+ ...+++++ ..++.++ ..+.+|+.
T Consensus 145 v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~-------------v~~v~~s~~~~~~~~s~~~dg~v~~wd~ 211 (357)
T 4g56_B 145 LSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE-------------VNCVAACPGKDTIFLSCGEDGRILLWDT 211 (357)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTCSSCEEEEETTSCEEECCT
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC-------------EEEEEEccCCCceeeeeccCCceEEEEC
Confidence 99988 4777655 567999999999988888766542 23466655 3455444 35778874
Q ss_pred CccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCC
Q 001935 270 GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG 349 (994)
Q Consensus 270 G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG 349 (994)
..- +.... ........ . ...+.++|... ..++.++.||
T Consensus 212 ~~~--~~~~~----~~~~~~~~-~--------------------------------v~~v~~sp~~~---~~la~g~~d~ 249 (357)
T 4g56_B 212 RKP--KPATR----IDFCASDT-I--------------------------------PTSVTWHPEKD---DTFACGDETG 249 (357)
T ss_dssp TSS--SCBCB----CCCTTCCS-C--------------------------------EEEEEECTTST---TEEEEEESSS
T ss_pred CCC--ceeee----eeeccccc-c--------------------------------ccchhhhhccc---ceEEEeeccc
Confidence 211 00000 00000000 0 00011111111 1234677899
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 001935 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (994)
Q Consensus 350 ~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG 428 (994)
.|+|||+.+++.+..+.+|..+|.+|+|+|+| ++|||++.||+ |+|||+.. + +.+..+ |
T Consensus 250 ~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~-------~----------~~~~~~--~ 309 (357)
T 4g56_B 250 NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADF-------S----------EVFRDL--S 309 (357)
T ss_dssp CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTS-------C----------EEEEEC--C
T ss_pred ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCC-------C----------cEeEEC--C
Confidence 99999999999999999999999999999998 68999999776 99999853 2 344333 4
Q ss_pred cccccEEEEEEcc-CCCEEEEEeCCCeEEEEecCCCCCC
Q 001935 429 ITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGD 466 (994)
Q Consensus 429 ~t~a~I~sIaFSp-Dg~~LAsgS~dGTVhIw~I~~~gg~ 466 (994)
|...|++|+||| |+++||++|.||+|+||++...+..
T Consensus 310 -H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 310 -HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp -CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred -CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 456799999998 8999999999999999999776543
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.94 E-value=1e-23 Score=228.95 Aligned_cols=254 Identities=15% Similarity=0.113 Sum_probs=190.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
..+|++.|..+.|.. ++++|++|..+| ++|||+. .++....+..|.++|..+++.|++
T Consensus 51 l~gH~~~v~~~~~s~-------d~~~l~s~s~Dg~v~iWd~~-~~~~~~~~~~~~~~v~~~~~s~~~------------- 109 (340)
T 1got_B 51 LRGHLAKIYAMHWGT-------DSRLLLSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSG------------- 109 (340)
T ss_dssp ECCCSSCEEEEEECT-------TSSEEEEEETTTEEEEEETT-TCCEEEEEECSSSCEEEEEECTTS-------------
T ss_pred ecCCCCceEEEEECC-------CCCEEEEEeCCCcEEEEECC-CCCcceEeecCCccEEEEEECCCC-------------
Confidence 467999999999963 566788887776 8999995 466677788899999999999865
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCe----EEEEEe-CCCcEEEEEecC--C
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC----YEHVLR-FRSSVCMVRCSP--R 203 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge----~V~tL~-f~S~V~sV~~S~--~ 203 (994)
.+|+..+ .+++|++||+.+++ ....+. +...|.++.+++ +
T Consensus 110 ~~l~s~~---------------------------------~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 156 (340)
T 1got_B 110 NYVACGG---------------------------------LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156 (340)
T ss_dssp SEEEEEE---------------------------------TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE
T ss_pred CEEEEEe---------------------------------CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc
Confidence 3566422 14689999998763 455554 446899998876 3
Q ss_pred eEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCC
Q 001935 204 IVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVS 283 (994)
Q Consensus 204 iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S 283 (994)
+++.+.++.|++||+.+.+.+.++..|..+ .. .|++.+
T Consensus 157 l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~-------------v~-------~~~~~~---------------------- 194 (340)
T 1got_B 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGD-------------VM-------SLSLAP---------------------- 194 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EE-------EEEECT----------------------
T ss_pred EEEEECCCcEEEEECCCCcEEEEEcCCCCc-------------eE-------EEEECC----------------------
Confidence 444556778999999999887777655431 01 122221
Q ss_pred CCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEE
Q 001935 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIIS 363 (994)
Q Consensus 284 ~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~ 363 (994)
++. .+++++.||.|+|||+.++..+.
T Consensus 195 -----~~~-------------------------------------------------~l~sg~~d~~v~~wd~~~~~~~~ 220 (340)
T 1got_B 195 -----DTR-------------------------------------------------LFVSGACDASAKLWDVREGMCRQ 220 (340)
T ss_dssp -----TSS-------------------------------------------------EEEEEETTSCEEEEETTTCSEEE
T ss_pred -----CCC-------------------------------------------------EEEEEeCCCcEEEEECCCCeeEE
Confidence 111 11245689999999999999999
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 001935 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (994)
Q Consensus 364 ~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg 443 (994)
.|.+|..+|.+|+|+|+|++||+++.+|+ |+|||+.. + ..+..+........|.+++|+||+
T Consensus 221 ~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~-------~----------~~~~~~~~~~~~~~v~~~~~s~~g 282 (340)
T 1got_B 221 TFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRA-------D----------QELMTYSHDNIICGITSVSFSKSG 282 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEECCTTCCSCEEEEEECTTS
T ss_pred EEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCC-------C----------cEEEEEccCCcccceEEEEECCCC
Confidence 99999999999999999999999999776 99999863 2 345555322233469999999999
Q ss_pred CEEEEEeCCCeEEEEecCCCCCCccccccc
Q 001935 444 QWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (994)
Q Consensus 444 ~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~ 473 (994)
++|++++.||+|+||++........+..|.
T Consensus 283 ~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~ 312 (340)
T 1got_B 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHD 312 (340)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred CEEEEECCCCeEEEEEcccCcEeeEeecCC
Confidence 999999999999999987655444555563
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.93 E-value=1.2e-23 Score=224.95 Aligned_cols=252 Identities=13% Similarity=0.072 Sum_probs=185.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
..+|.+.|..+.|.. +++.|++|..+| ++|||++ .+.....+..|..+|..+++.|++
T Consensus 9 ~~~h~~~V~~~~fsp-------~~~~l~s~~~dg~v~lWd~~-~~~~~~~~~~~~~~v~~~~~~~~~------------- 67 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHP-------TEPWVLTTLYSGRVELWNYE-TQVEVRSIQVTETPVRAGKFIARK------------- 67 (304)
T ss_dssp EEEECSCEEEEEECS-------SSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEEEGGG-------------
T ss_pred ecCCCCceEEEEECC-------CCCEEEEEcCCCcEEEEECC-CCceeEEeeccCCcEEEEEEeCCC-------------
Confidence 356889999999973 556777776665 9999995 466677788899999999999764
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEE
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV 207 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--~iLAV 207 (994)
.+|++.+ .+++|++||+++++++.+++.+ ..|.+|++++ ++|++
T Consensus 68 ~~l~s~s---------------------------------~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 114 (304)
T 2ynn_A 68 NWIIVGS---------------------------------DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114 (304)
T ss_dssp TEEEEEE---------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred CEEEEEC---------------------------------CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEE
Confidence 3566422 1478999999999999999755 6899999998 46666
Q ss_pred Ee-CCeEEEEECCCCce-eEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCC
Q 001935 208 GL-ATQIYCFDALTLEN-KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (994)
Q Consensus 208 gl-~~~I~IwDa~Tle~-l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~s 285 (994)
+. ++.|++||+.+... ...+..|..+ . ..++|.+
T Consensus 115 gs~D~~v~lWd~~~~~~~~~~~~~h~~~-------------v-------~~v~~~p------------------------ 150 (304)
T 2ynn_A 115 GSDDLTVKLWNWENNWALEQTFEGHEHF-------------V-------MCVAFNP------------------------ 150 (304)
T ss_dssp EETTSCEEEEEGGGTTEEEEEECCCCSC-------------E-------EEEEECT------------------------
T ss_pred ECCCCeEEEEECCCCcchhhhhcccCCc-------------E-------EEEEECC------------------------
Confidence 55 56899999987643 3334434321 0 1122221
Q ss_pred cCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 001935 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (994)
Q Consensus 286 tSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~ 365 (994)
.++. .+++++.||.|+|||+.+......+
T Consensus 151 ---~~~~------------------------------------------------~l~sgs~D~~v~iwd~~~~~~~~~~ 179 (304)
T 2ynn_A 151 ---KDPS------------------------------------------------TFASGCLDRTVKVWSLGQSTPNFTL 179 (304)
T ss_dssp ---TCTT------------------------------------------------EEEEEETTSEEEEEETTCSSCSEEE
T ss_pred ---CCCC------------------------------------------------EEEEEeCCCeEEEEECCCCCcccee
Confidence 1111 1234678999999999887655555
Q ss_pred c-cCCCCeEEEEECC--CCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 001935 366 K-AHTSPISALCFDP--SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (994)
Q Consensus 366 ~-aHtspIsaLaFSP--dGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpD 442 (994)
. .|..+|..++|+| ++.+|||++.+|+ |+|||+.. + .++.++. |+ ...|.+++|+|+
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~~-------~----------~~~~~~~-~h-~~~v~~~~~~p~ 239 (304)
T 2ynn_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQT-------K----------SCVATLE-GH-MSNVSFAVFHPT 239 (304)
T ss_dssp ECCCTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETTT-------T----------EEEEEEE-CC-SSCEEEEEECSS
T ss_pred ccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCCC-------C----------ccceeeC-CC-CCCEEEEEECCC
Confidence 4 5778999999987 7889999999665 99999863 2 4677774 54 457999999999
Q ss_pred CCEEEEEeCCCeEEEEecCCCCCCcccccc
Q 001935 443 SQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (994)
Q Consensus 443 g~~LAsgS~dGTVhIw~I~~~gg~~~~~~H 472 (994)
+++|++++.||+|+||++........+..|
T Consensus 240 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~ 269 (304)
T 2ynn_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (304)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCS
T ss_pred CCEEEEEcCCCeEEEEECCCCceeeeccCC
Confidence 999999999999999999876544444333
No 8
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.93 E-value=3.2e-23 Score=228.88 Aligned_cols=226 Identities=13% Similarity=0.140 Sum_probs=161.8
Q ss_pred CcEEEEEccCCCcceEeeee--------ccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccc
Q 001935 84 NGFQVLDVEDASNFNELVSK--------RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGG 155 (994)
Q Consensus 84 ~G~qVWDv~~~g~v~ells~--------hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~ 155 (994)
+.+++|+++...+..+.+.. ++..|+.++|+|++ .+||+.+++
T Consensus 104 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-------------~~la~as~~---------------- 154 (365)
T 4h5i_A 104 KHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-------------TVAAIASSK---------------- 154 (365)
T ss_dssp CCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-------------SCEEEEESC----------------
T ss_pred CcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-------------CEEEEEECC----------------
Confidence 34899998654443333322 34569999999887 256664431
Q ss_pred cccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEeecCCc
Q 001935 156 VRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVP 233 (994)
Q Consensus 156 vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p 233 (994)
.+++|+|||+++++++.++++...|++|+|+| ++|+++.++.+++|+..+.+.+.........
T Consensus 155 ---------------~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~ 219 (365)
T 4h5i_A 155 ---------------VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKN 219 (365)
T ss_dssp ---------------SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTT
T ss_pred ---------------CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCC
Confidence 24799999999999999999989999999998 6899999999999998887765443221110
Q ss_pred cccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceee
Q 001935 234 QLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTL 313 (994)
Q Consensus 234 ~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktl 313 (994)
.. .+-++|.++ +..+++ +
T Consensus 220 ----------------~~--v~~v~fspd---------------------------g~~l~~------------~----- 237 (365)
T 4h5i_A 220 ----------------WS--LSKINFIAD---------------------------DTVLIA------------A----- 237 (365)
T ss_dssp ----------------EE--EEEEEEEET---------------------------TEEEEE------------E-----
T ss_pred ----------------CC--EEEEEEcCC---------------------------CCEEEE------------E-----
Confidence 00 012333321 111110 0
Q ss_pred ccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc----EEEEeccCCCCeEEEEECCCCCEEEEEEc
Q 001935 314 SKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA----IISQFKAHTSPISALCFDPSGTLLVTASV 389 (994)
Q Consensus 314 S~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~----~i~~~~aHtspIsaLaFSPdGtlLATAS~ 389 (994)
..+......+++||+.... ....+.+|..+|.+|+|||||++||+|+.
T Consensus 238 ----------------------------s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~ 289 (365)
T 4h5i_A 238 ----------------------------SLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN 289 (365)
T ss_dssp ----------------------------EESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred ----------------------------ecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence 0011122357788877654 24678899999999999999999999999
Q ss_pred CCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 390 YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 390 dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
||+ |+|||+.. + +.+.++.+||. ..|++|+|||||++||++|.|+||+||+|..
T Consensus 290 D~~-V~iwd~~~-------~----------~~~~~~~~gH~-~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 290 DNS-IALVKLKD-------L----------SMSKIFKQAHS-FAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TSC-EEEEETTT-------T----------EEEEEETTSSS-SCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCE-EEEEECCC-------C----------cEEEEecCccc-CCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 776 99999863 3 57777777754 5799999999999999999999999999964
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.93 E-value=2.5e-23 Score=237.85 Aligned_cols=304 Identities=18% Similarity=0.189 Sum_probs=208.4
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
.++...|..+.|. ++++.|++|..++ +++||. .+++.+.+..|.++|..+++.|++ .
T Consensus 259 ~~~~~~v~~v~~~-------~d~~~l~~~~~d~~i~~w~~--~~~~~~~~~~h~~~v~~~~~~~~~-------------~ 316 (577)
T 2ymu_A 259 TGHSSSVNGVAFR-------PDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDG-------------Q 316 (577)
T ss_dssp CCCSSCEEEEEEC-------TTSSEEEEEETTSCEEEEET--TSCEEEEECCCSSCEEEEEECTTS-------------S
T ss_pred ecCCCCEEEEEEc-------CCCCEEEEEeCCCEEEEEeC--CCcEEEEEecCCCCeEEEEECCCC-------------C
Confidence 3455666666664 3556777777665 999997 456778888899999999998865 3
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecC--CeEEEE
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP--RIVAVG 208 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~-f~S~V~sV~~S~--~iLAVg 208 (994)
+|+..+. +++|++||+...+ +..+. +...|.++++++ +.|+++
T Consensus 317 ~l~t~~~---------------------------------d~~i~~w~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~ 362 (577)
T 2ymu_A 317 TIASASD---------------------------------DKTVKLWNRNGQH-LQTLTGHSSSVWGVAFSPDGQTIASA 362 (577)
T ss_dssp EEEEEET---------------------------------TSCEEEEETTSCE-EEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEeC---------------------------------CCeEEEEeCCCCe-eEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 5564321 3679999986554 45554 457899999987 577776
Q ss_pred eC-CeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccC--CeeeccC-Ccc--CCCcCCCC
Q 001935 209 LA-TQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNS-GRL--SPQNLTPS 280 (994)
Q Consensus 209 l~-~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~--~~~iwd~-G~~--s~qsltp~ 280 (994)
.. +.|++||. +.+.+.++..|..+ ...+++++ ++||.++. .+.+|+. +.. .......+
T Consensus 363 ~~dg~v~~~~~-~~~~~~~~~~~~~~-------------v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~ 428 (577)
T 2ymu_A 363 SDDKTVKLWNR-NGQLLQTLTGHSSS-------------VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 428 (577)
T ss_dssp ETTSEEEEEET-TCCEEEEEECCSSC-------------EEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSC
T ss_pred eCCCEEEEEcC-CCCEEEEecCCCCC-------------eEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCC
Confidence 64 57999995 56677777665442 24577776 78887654 4678874 221 11122334
Q ss_pred CCCCCcCCCCCceEEEeehhhh---hhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECC
Q 001935 281 GVSPSTSPGGSSLVARYAMEHS---KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV 357 (994)
Q Consensus 281 ~~S~stSp~~gsLVa~~A~dss---k~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~ 357 (994)
+..+.++|++..++.- ..+.. +++.....+++..+.. ....+.++++++ .+++++.||.|+|||.
T Consensus 429 v~~~~~s~d~~~l~~~-~~d~~v~~w~~~~~~~~~~~~~~~------~v~~~~~spd~~----~las~~~d~~i~iw~~- 496 (577)
T 2ymu_A 429 VWGVAFSPDDQTIASA-SDDKTVKLWNRNGQLLQTLTGHSS------SVRGVAFSPDGQ----TIASASDDKTVKLWNR- 496 (577)
T ss_dssp EEEEEECTTSSEEEEE-ETTSEEEEEETTSCEEEEEECCSS------CEEEEEECTTSC----EEEEEETTSEEEEEET-
T ss_pred eEEEEECCCCCEEEEE-cCCCEEEEEECCCCEEEEEcCCCC------CEEEEEEcCCCC----EEEEEeCCCEEEEEcC-
Confidence 4556778887665542 11211 1111111122222211 112233444444 3457789999999995
Q ss_pred CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEE
Q 001935 358 TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDI 437 (994)
Q Consensus 358 s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sI 437 (994)
+++.+..+.+|..+|.+|+|+|||++|||++.||+ |+|||.. | ..+.++. |+ ...|++|
T Consensus 497 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~-v~lwd~~--------~----------~~~~~~~-~h-~~~v~~~ 555 (577)
T 2ymu_A 497 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNRN--------G----------QLLQTLT-GH-SSSVWGV 555 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE-EEEECTT--------S----------CEEEEEE-CC-SSCEEEE
T ss_pred CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCE-EEEEeCC--------C----------CEEEEEc-CC-CCCEEEE
Confidence 57889999999999999999999999999999665 9999962 3 4666764 54 4679999
Q ss_pred EEccCCCEEEEEeCCCeEEEEe
Q 001935 438 CFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 438 aFSpDg~~LAsgS~dGTVhIw~ 459 (994)
+|+||+++|++++.|++|+||+
T Consensus 556 ~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 556 AFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EECTTSSCEEEEETTSCEEEEC
T ss_pred EEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999999996
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.93 E-value=4.9e-23 Score=221.92 Aligned_cols=280 Identities=12% Similarity=0.080 Sum_probs=191.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC----cceEeeeeccCCEEEEEEecCCCCCCCCCCc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS----NFNELVSKRDGPVSFLQMQPFPVKDDGCEGF 126 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g----~v~ells~hdGpV~~v~~lP~p~~s~~~D~F 126 (994)
.++|++.|..+.|.. ..+++|++|..+| ++|||+.... .....+..|.++|..+.+.|++
T Consensus 13 l~gH~~~V~~l~~~~------~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg--------- 77 (319)
T 3frx_A 13 LEGHNGWVTSLATSA------GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG--------- 77 (319)
T ss_dssp ECCCSSCEEEEEECS------SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS---------
T ss_pred EccccceEEEEEccC------CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC---------
Confidence 578999999999862 1235677776665 9999985322 1235677899999999999875
Q ss_pred cccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC--C
Q 001935 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--R 203 (994)
Q Consensus 127 ~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~S~V~sV~~S~--~ 203 (994)
.+|+..+ .+++|+|||+++++++.++.. ...|.++++++ +
T Consensus 78 ----~~l~s~s---------------------------------~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 120 (319)
T 3frx_A 78 ----AYALSAS---------------------------------WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120 (319)
T ss_dssp ----SEEEEEE---------------------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC
T ss_pred ----CEEEEEe---------------------------------CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC
Confidence 3556432 147999999999999999875 46899999987 4
Q ss_pred eEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--------cEEEEccC--CeeeccCCcc
Q 001935 204 IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--------RWLAYASN--TLLLSNSGRL 272 (994)
Q Consensus 204 iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--------RwLAyas~--~~~iwd~G~~ 272 (994)
+|+++. ++.|++||+. .+++.++..|..+ ...+++.+ ..|+.++. .+.+|+....
T Consensus 121 ~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~-------------v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 186 (319)
T 3frx_A 121 MIISGSRDKTIKVWTIK-GQCLATLLGHNDW-------------VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186 (319)
T ss_dssp EEEEEETTSCEEEEETT-SCEEEEECCCSSC-------------EEEEEECCC------CCEEEEEETTSCEEEEETTTT
T ss_pred EEEEEeCCCeEEEEECC-CCeEEEEeccCCc-------------EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc
Confidence 666655 5689999986 4556666655432 12234433 24554443 4667763110
Q ss_pred CCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEE
Q 001935 273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV 352 (994)
Q Consensus 273 s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~ 352 (994)
.+. ..+.++.. ....+.+++.++ .+++++.||.|+
T Consensus 187 -------------------~~~----------------~~~~~h~~------~v~~~~~sp~g~----~l~s~~~dg~i~ 221 (319)
T 3frx_A 187 -------------------QIE----------------ADFIGHNS------NINTLTASPDGT----LIASAGKDGEIM 221 (319)
T ss_dssp -------------------EEE----------------EEECCCCS------CEEEEEECTTSS----EEEEEETTCEEE
T ss_pred -------------------hhh----------------eeecCCCC------cEEEEEEcCCCC----EEEEEeCCCeEE
Confidence 000 01111100 011122233333 345778999999
Q ss_pred EEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc----
Q 001935 353 VKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG---- 428 (994)
Q Consensus 353 VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG---- 428 (994)
|||+.+++.+..+..| .+|.+|+|+|+|.+||+++.+ .|+||++.+. ..+..++..
T Consensus 222 iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~--~i~v~~~~~~-----------------~~~~~~~~~~~~~ 281 (319)
T 3frx_A 222 LWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT--GIKVFSLDPQ-----------------YLVDDLRPEFAGY 281 (319)
T ss_dssp EEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETT--EEEEEEETTE-----------------EEEEEECCCCTTC
T ss_pred EEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCC--CcEEEEeCcC-----------------eeeeccCcccccc
Confidence 9999999999888866 689999999999999998863 4999998641 234444321
Q ss_pred --cccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 429 --ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 429 --~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
.+...|.+++|||||++|++++.||+|+||++..
T Consensus 282 ~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred ccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 1234689999999999999999999999999864
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.92 E-value=2.4e-23 Score=244.82 Aligned_cols=335 Identities=14% Similarity=0.114 Sum_probs=205.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCC-eEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFK-QVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~-~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
..+|++.|..+.|.. ++ ..|++|..++ ++|||.. .+++...+..|.++|.+++|.|++
T Consensus 143 l~gh~~~v~~v~f~p-------~~~~~l~s~s~D~~v~lwd~~-~~~~~~~l~~H~~~V~~v~fspdg------------ 202 (611)
T 1nr0_A 143 LTGQARAMNSVDFKP-------SRPFRIISGSDDNTVAIFEGP-PFKFKSTFGEHTKFVHSVRYNPDG------------ 202 (611)
T ss_dssp CCCCSSCEEEEEECS-------SSSCEEEEEETTSCEEEEETT-TBEEEEEECCCSSCEEEEEECTTS------------
T ss_pred ecCCCCCceEEEECC-------CCCeEEEEEeCCCeEEEEECC-CCeEeeeeccccCceEEEEECCCC------------
Confidence 467888999999963 32 3566666655 9999985 467778888999999999999875
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe--------CCCcEEEEEec
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR--------FRSSVCMVRCS 201 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~--------f~S~V~sV~~S 201 (994)
.+||..+. +++|+|||+++++++.++. +...|++|+|+
T Consensus 203 -~~las~s~---------------------------------D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s 248 (611)
T 1nr0_A 203 -SLFASTGG---------------------------------DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248 (611)
T ss_dssp -SEEEEEET---------------------------------TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred -CEEEEEEC---------------------------------CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC
Confidence 36665321 3679999999999888873 45689999998
Q ss_pred C--CeEEEEe-CCeEEEEECCCCceeEEEeecCCcccc---------------CCC---------------ccccccCcc
Q 001935 202 P--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLA---------------GQG---------------AVGINVGYG 248 (994)
Q Consensus 202 ~--~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~---------------~~g---------------~~~vnv~~g 248 (994)
+ ++|+++. ++.|++||+.+++++.++......... ..+ ..+-.....
T Consensus 249 pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~ 328 (611)
T 1nr0_A 249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAIT 328 (611)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEE
Confidence 7 4666644 567999999888777666422100000 000 000000123
Q ss_pred ceEEcc--cEEEEccC--CeeeccC--Ccc---CCCcCCCCCCCCCcCCCCCceEEEeehhhhhhh---h----------
Q 001935 249 PMAVGP--RWLAYASN--TLLLSNS--GRL---SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF---A---------- 306 (994)
Q Consensus 249 plAlgp--RwLAyas~--~~~iwd~--G~~---s~qsltp~~~S~stSp~~gsLVa~~A~dssk~l---a---------- 306 (994)
.+++++ ++|+.++. .+.+|+. +.. -.+.....+.+..++++ +.++. ...+...++ .
T Consensus 329 ~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~-~~l~s-~s~d~~v~~w~~~~~~~~~~~~~ 406 (611)
T 1nr0_A 329 ALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFT-VSWDDHLKVVPAGGSGVDSSKAV 406 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT-SCEEE-EETTTEEEEECSSSSSSCTTSCC
T ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC-CcEEE-EEcCCceEEeecCCcccccccee
Confidence 467776 77777653 5778874 211 00111222333334433 22221 111100000 0
Q ss_pred ---------------cc------cceeeccc----cccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 001935 307 ---------------AG------LSKTLSKY----CQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (994)
Q Consensus 307 ---------------~G------i~ktlS~y----~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~ 361 (994)
.| ..+.+.-| ...+........+.++|+++ .+++++.||.|+|||+.++..
T Consensus 407 ~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~----~lasgs~D~~v~lwd~~~~~~ 482 (611)
T 1nr0_A 407 ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ----FVAVGGQDSKVHVYKLSGASV 482 (611)
T ss_dssp EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC----EEEEEETTSEEEEEEEETTEE
T ss_pred eeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC----EEEEeCCCCeEEEEEccCCce
Confidence 00 00000000 00000001112233445544 345788999999999987653
Q ss_pred --EEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 001935 362 --ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (994)
Q Consensus 362 --i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaF 439 (994)
+.. .+|..+|.+|+|+|||++||+++.+++ |++|++... + ..+.....+.|...|++++|
T Consensus 483 ~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~-v~~w~~~~~------~----------~~~~~~~~~~H~~~V~~v~f 544 (611)
T 1nr0_A 483 SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANN------F----------ELAHTNSWTFHTAKVACVSW 544 (611)
T ss_dssp EEEEE-EECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGT------T----------EESCCCCCCCCSSCEEEEEE
T ss_pred eeeec-cCCCCceEEEEECCCCCEEEEEcCCCC-EEEEEcCCC------C----------ceeeeeeeeecccceeEEEE
Confidence 334 789999999999999999999999766 999998531 1 12222112325568999999
Q ss_pred ccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 440 SHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 440 SpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
||||++||++|.|++|+||++....
T Consensus 545 spdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 545 SPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEETTCTT
T ss_pred CCCCCEEEEEECCCcEEEEECCCcc
Confidence 9999999999999999999997643
No 12
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.92 E-value=5.1e-23 Score=219.25 Aligned_cols=264 Identities=11% Similarity=0.102 Sum_probs=178.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC-CCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED-ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~-~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
..+|++.|.-+.|+. +++.|++|..+| ++|||++. ...+...+..|.++|..+++.|.. .
T Consensus 5 ~~~h~~~V~~~~~s~-------~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-----------~ 66 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDY-------YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------F 66 (297)
T ss_dssp CCSCSSCEEEEEECT-------TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-----------G
T ss_pred ccCCcCceEEEEECC-------CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-----------c
Confidence 467999999999973 456777777665 99999963 235667888999999999997531 1
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeC-CCcEEEEEecC----
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSP---- 202 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge--~V~tL~f-~S~V~sV~~S~---- 202 (994)
..+||..+ .+++|+|||+++++ .+.++.. ...|.+|++++
T Consensus 67 g~~l~s~s---------------------------------~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g 113 (297)
T 2pm7_B 67 GTILASCS---------------------------------YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 113 (297)
T ss_dssp CSEEEEEE---------------------------------TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGC
T ss_pred CCEEEEEc---------------------------------CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCC
Confidence 13666532 24799999999884 5556654 46899999987
Q ss_pred CeEEEEe-CCeEEEEECCCCce--eEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCC
Q 001935 203 RIVAVGL-ATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP 279 (994)
Q Consensus 203 ~iLAVgl-~~~I~IwDa~Tle~--l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp 279 (994)
++|+++. ++.|++||+.+... ...+..|..+ ... ++|.+.....
T Consensus 114 ~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~-------------v~~-------~~~~p~~~~~------------- 160 (297)
T 2pm7_B 114 PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------VNS-------ASWAPATIEE------------- 160 (297)
T ss_dssp SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSC-------------EEE-------EEECCCC----------------
T ss_pred cEEEEEECCCcEEEEEecCCCceeeeeeecccCc-------------cce-------EeecCCcccc-------------
Confidence 3666655 56899999987532 2333333321 111 2222211000
Q ss_pred CCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 001935 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (994)
Q Consensus 280 ~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~ 359 (994)
. +. +. .+ ... ..+++++.||.|+|||+.++
T Consensus 161 ---------~-~~---------------~~-----------~~----------~~~----~~l~sgs~D~~v~lwd~~~~ 190 (297)
T 2pm7_B 161 ---------D-GE---------------HN-----------GT----------KES----RKFVTGGADNLVKIWKYNSD 190 (297)
T ss_dssp -------------------------------------------------------C----CEEEEEETTSCEEEEEEETT
T ss_pred ---------c-cc---------------CC-----------CC----------CCc----ceEEEEcCCCcEEEEEEcCC
Confidence 0 00 00 00 000 02346788999999999876
Q ss_pred c----EEEEeccCCCCeEEEEECCCC---CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 001935 360 A----IISQFKAHTSPISALCFDPSG---TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 432 (994)
Q Consensus 360 ~----~i~~~~aHtspIsaLaFSPdG---tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a 432 (994)
+ .+..|.+|..+|.+|+|+|+| .+|||+|.||+ |+||++... .+ . .....+....+..
T Consensus 191 ~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iWd~~~~-----~~--------~-~~~~~~~~~~~~~ 255 (297)
T 2pm7_B 191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWTQDNE-----QG--------P-WKKTLLKEEKFPD 255 (297)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESST-----TS--------C-CEEEESSSSCCSS
T ss_pred CceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEEEeCCC-----CC--------c-cceeeeecccCCC
Confidence 5 667899999999999999995 89999999776 999998531 01 0 1112221112346
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 433 ~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
.|++++|+||+++||+++.||+|+||++...|
T Consensus 256 ~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp CEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence 79999999999999999999999999987543
No 13
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.92 E-value=1.4e-22 Score=222.14 Aligned_cols=255 Identities=12% Similarity=0.025 Sum_probs=187.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
..+|++.|..+.|.. +++.|++|..+| ++|||+. .++....+..|..+|..+++.|++
T Consensus 60 l~gH~~~V~~~~~s~-------d~~~l~s~s~Dg~v~vWd~~-~~~~~~~~~~~~~~v~~~~~sp~g------------- 118 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCK-------DKRRIVSSSQDGKVIVWDSF-TTNKEHAVTMPCTWVMACAYAPSG------------- 118 (354)
T ss_dssp EECCSSCEEEEEECT-------TSSEEEEEETTSEEEEEETT-TCCEEEEEECSSSCCCEEEECTTS-------------
T ss_pred ecCCCCeEEEEEECC-------CCCEEEEEeCCCeEEEEECC-CCCcceEEecCCCCEEEEEECCCC-------------
Confidence 467999999999963 456777777776 8999985 466777778888999999999875
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCC------eEEEEEe-CCCcEEEEEecC-
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH------CYEHVLR-FRSSVCMVRCSP- 202 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktg------e~V~tL~-f~S~V~sV~~S~- 202 (994)
.+||.. + .++++++|++... .....+. +...|.++.|++
T Consensus 119 ~~lasg-~--------------------------------~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 165 (354)
T 2pbi_B 119 CAIACG-G--------------------------------LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNS 165 (354)
T ss_dssp SEEEEE-S--------------------------------TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSS
T ss_pred CEEEEe-e--------------------------------CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCC
Confidence 355542 1 2478999998643 2334444 456899999987
Q ss_pred -CeEEE-EeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCC
Q 001935 203 -RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (994)
Q Consensus 203 -~iLAV-gl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~ 280 (994)
+.|++ +.++.|++||+.+.+.+.++..|..+ ... +++..+
T Consensus 166 ~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~-------------v~~-------~~~~~~------------------ 207 (354)
T 2pbi_B 166 DMQILTASGDGTCALWDVESGQLLQSFHGHGAD-------------VLC-------LDLAPS------------------ 207 (354)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EEE-------EEECCC------------------
T ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-------------eEE-------EEEEeC------------------
Confidence 35555 55678999999999988888766431 011 122110
Q ss_pred CCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 001935 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (994)
Q Consensus 281 ~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~ 360 (994)
++ +. .+++++.||.|++||+.+++
T Consensus 208 -------~~-g~------------------------------------------------~l~sgs~Dg~v~~wd~~~~~ 231 (354)
T 2pbi_B 208 -------ET-GN------------------------------------------------TFVSGGCDKKAMVWDMRSGQ 231 (354)
T ss_dssp -------SS-CC------------------------------------------------EEEEEETTSCEEEEETTTCC
T ss_pred -------CC-CC------------------------------------------------EEEEEeCCCeEEEEECCCCc
Confidence 00 00 12345789999999999999
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 001935 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (994)
Q Consensus 361 ~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFS 440 (994)
.+..+.+|..+|.+++|+|+|.+|||++.||+ |+|||+.. + ..+..+........+.+++|+
T Consensus 232 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~-------~----------~~~~~~~~~~~~~~~~~~~~s 293 (354)
T 2pbi_B 232 CVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRA-------D----------REVAIYSKESIIFGASSVDFS 293 (354)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------T----------EEEEEECCTTCCSCEEEEEEC
T ss_pred EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCC-------C----------cEEEEEcCCCcccceeEEEEe
Confidence 99999999999999999999999999999776 99999853 2 344444333233468999999
Q ss_pred cCCCEEEEEeCCCeEEEEecCCCCCCcccccc
Q 001935 441 HYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (994)
Q Consensus 441 pDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H 472 (994)
||+++|++++.|++|+||++........+..|
T Consensus 294 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h 325 (354)
T 2pbi_B 294 LSGRLLFAGYNDYTINVWDVLKGSRVSILFGH 325 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred CCCCEEEEEECCCcEEEEECCCCceEEEEECC
Confidence 99999999999999999999765433344455
No 14
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.92 E-value=5.1e-22 Score=210.54 Aligned_cols=279 Identities=11% Similarity=0.080 Sum_probs=199.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
..+|++.|..+.|.. +++.|++|..+| ++|||+. .+++...+..|.++|..+++.|++
T Consensus 19 ~~gh~~~v~~~~~s~-------~~~~l~s~~~dg~i~iw~~~-~~~~~~~~~~h~~~v~~~~~~~~~------------- 77 (312)
T 4ery_A 19 LAGHTKAVSSVKFSP-------NGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS------------- 77 (312)
T ss_dssp ECCCSSCEEEEEECT-------TSSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTS-------------
T ss_pred EcccCCcEEEEEECC-------CCCEEEEeeCCCeEEEEeCC-CcccchhhccCCCceEEEEEcCCC-------------
Confidence 467899999999973 456777777665 9999995 577888889999999999999865
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEE
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAV 207 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--~iLAV 207 (994)
.+|+..+ .+++|++||+++++++..++.+ ..|.++.+++ ++|++
T Consensus 78 ~~l~s~~---------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 124 (312)
T 4ery_A 78 NLLVSAS---------------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 124 (312)
T ss_dssp SEEEEEE---------------------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred CEEEEEC---------------------------------CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 3566432 1368999999999999999754 6899999988 46666
Q ss_pred Ee-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccC--CeeeccCCccCCCcCCCCCC
Q 001935 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGV 282 (994)
Q Consensus 208 gl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~--~~~iwd~G~~s~qsltp~~~ 282 (994)
+. ++.|++||+.+.+.+..+..+..+ ...+++++ ++|+.++. .+.+|+....
T Consensus 125 ~~~d~~i~iwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~---------- 181 (312)
T 4ery_A 125 GSFDESVRIWDVKTGKCLKTLPAHSDP-------------VSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------- 181 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSC-------------EEEEEECTTSSEEEEEETTSCEEEEETTTC----------
T ss_pred EeCCCcEEEEECCCCEEEEEecCCCCc-------------EEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------
Confidence 55 668999999999988887765442 23466665 67766653 4677873110
Q ss_pred CCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE
Q 001935 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII 362 (994)
Q Consensus 283 S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i 362 (994)
..+..... . .......+.+++..+ .++.++.||.|+|||+.+++.+
T Consensus 182 ---------~~~~~~~~--------~-------------~~~~~~~~~~~~~~~----~l~~~~~d~~i~iwd~~~~~~~ 227 (312)
T 4ery_A 182 ---------QCLKTLID--------D-------------DNPPVSFVKFSPNGK----YILAATLDNTLKLWDYSKGKCL 227 (312)
T ss_dssp ---------CEEEEECC--------S-------------SCCCEEEEEECTTSS----EEEEEETTTEEEEEETTTTEEE
T ss_pred ---------ceeeEEec--------c-------------CCCceEEEEECCCCC----EEEEEcCCCeEEEEECCCCcEE
Confidence 00000000 0 000000111222222 2346678999999999999999
Q ss_pred EEeccCCCCeE---EEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 001935 363 SQFKAHTSPIS---ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (994)
Q Consensus 363 ~~~~aHtspIs---aLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaF 439 (994)
..+.+|...+. ...+.++|.+|++++.+|. |+||++.. + ..+.++ +|+ ...|.+++|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~-i~vwd~~~-------~----------~~~~~~-~~h-~~~v~~~~~ 287 (312)
T 4ery_A 228 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQT-------K----------EIVQKL-QGH-TDVVISTAC 287 (312)
T ss_dssp EEECSSCCSSSCCCEEEECSSSCEEEECCTTSC-EEEEETTT-------C----------CEEEEE-CCC-SSCEEEEEE
T ss_pred EEEEecCCceEEEEEEEEeCCCcEEEEECCCCE-EEEEECCC-------c----------hhhhhh-hcc-CCcEEEEee
Confidence 99999987543 3344578999999999776 99999864 2 355666 454 467999999
Q ss_pred ccCCCEEEEEe--CCCeEEEEecC
Q 001935 440 SHYSQWIAIVS--SKGTCHVFVLS 461 (994)
Q Consensus 440 SpDg~~LAsgS--~dGTVhIw~I~ 461 (994)
+|++++|++++ .|++|+||+.+
T Consensus 288 ~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 288 HPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSSEEEEEECTTTCCEEEEECC
T ss_pred cCcCCceEEEEccCCccEEEecCC
Confidence 99999999997 69999999964
No 15
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.7e-22 Score=208.96 Aligned_cols=292 Identities=8% Similarity=0.058 Sum_probs=201.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
..+|++.|..+.|.. ++++|++|..+| ++|||+. .++....+..|.++|.++++.|++
T Consensus 28 l~~h~~~v~~~~~s~-------~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~------------- 86 (369)
T 3zwl_B 28 LTGHERPLTQVKYNK-------EGDLLFSCSKDSSASVWYSL-NGERLGTLDGHTGTIWSIDVDCFT------------- 86 (369)
T ss_dssp EECCSSCEEEEEECT-------TSCEEEEEESSSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTS-------------
T ss_pred EEEeeceEEEEEEcC-------CCCEEEEEeCCCEEEEEeCC-CchhhhhhhhcCCcEEEEEEcCCC-------------
Confidence 467899999999973 456788877665 9999995 577778888899999999999764
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEE
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVG 208 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVg 208 (994)
.+|++.+ .+++|++||+++++++..+.+...|.++++++ +.|+++
T Consensus 87 ~~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 133 (369)
T 3zwl_B 87 KYCVTGS---------------------------------ADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAI 133 (369)
T ss_dssp SEEEEEE---------------------------------TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CEEEEEe---------------------------------CCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEe
Confidence 3566532 13689999999999999999889999999988 566666
Q ss_pred eC------CeEEEEECCCCceeEEEeecCC-ccccCCCccccccCccceEEcc--cEEEEccC--CeeeccCCccCCCcC
Q 001935 209 LA------TQIYCFDALTLENKFSVLTYPV-PQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNL 277 (994)
Q Consensus 209 l~------~~I~IwDa~Tle~l~tL~t~p~-p~~~~~g~~~vnv~~gplAlgp--RwLAyas~--~~~iwd~G~~s~qsl 277 (994)
.. +.|++||+.+.+....+..... +........+ ......+++++ ++|+.++. .+.+|+....
T Consensus 134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----- 207 (369)
T 3zwl_B 134 LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG-LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN----- 207 (369)
T ss_dssp ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT-CCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-----
T ss_pred cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC-ccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-----
Confidence 54 5899999887654333322111 0000000000 00123466666 67776654 3566763110
Q ss_pred CCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECC
Q 001935 278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV 357 (994)
Q Consensus 278 tp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~ 357 (994)
+..+. .+..+. .....+.+++... .++.++.||.|+|||+.
T Consensus 208 -------------~~~~~----------------~~~~~~------~~v~~~~~~~~~~----~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 208 -------------YEYVD----------------SIDLHE------KSISDMQFSPDLT----YFITSSRDTNSFLVDVS 248 (369)
T ss_dssp -------------TEEEE----------------EEECCS------SCEEEEEECTTSS----EEEEEETTSEEEEEETT
T ss_pred -------------cEeEE----------------EEecCC------CceeEEEECCCCC----EEEEecCCceEEEEECC
Confidence 00100 010000 0001112222222 23466789999999999
Q ss_pred CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC-------------eEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 001935 358 TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN-------------NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (994)
Q Consensus 358 s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt-------------~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~ 424 (994)
+++.+..+. |..++.+++|+|+|++|++++.++. .|++|++.. + ..+..
T Consensus 249 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-------~----------~~~~~ 310 (369)
T 3zwl_B 249 TLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-------E----------EEIGR 310 (369)
T ss_dssp TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT-------C----------CEEEE
T ss_pred CCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-------C----------cchhh
Confidence 999988888 7889999999999999999998764 689999853 2 35555
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 425 L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
+. ++ ...|.+++|+||+++|++++.||+|+||++..
T Consensus 311 ~~-~~-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 311 VQ-GH-FGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EE-CC-SSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ee-cc-cCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 53 43 45799999999999999999999999999875
No 16
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.91 E-value=2e-22 Score=223.44 Aligned_cols=283 Identities=14% Similarity=0.124 Sum_probs=191.9
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeecc------------------CCEEEEEEec
Q 001935 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRD------------------GPVSFLQMQP 115 (994)
Q Consensus 54 ~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~ells~hd------------------GpV~~v~~lP 115 (994)
+|++.|..+.|. +++++|++|.++.++||++. .+++...+..+. ..|+++++.|
T Consensus 62 ~h~~~V~~v~fs-------pdg~~la~g~~~~v~i~~~~-~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 62 DHTSVVCCVKFS-------NDGEYLATGCNKTTQVYRVS-DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp ECSSCCCEEEEC-------TTSSEEEEECBSCEEEEETT-TCCEEEEECC-----------------CCCCBEEEEEECT
T ss_pred CCCCEEEEEEEC-------CCCCEEEEEcCCcEEEEEec-CCCEEEEecCccccccccccccccccCCCceeEEEEEECC
Confidence 467777777775 46789999998889999995 455555554432 2488888887
Q ss_pred CCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCc
Q 001935 116 FPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSS 194 (994)
Q Consensus 116 ~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~S~ 194 (994)
++ .+||..+ .+++|+|||+.+++.+.++.. ...
T Consensus 134 dg-------------~~l~s~~---------------------------------~d~~i~iwd~~~~~~~~~~~~h~~~ 167 (393)
T 1erj_A 134 DG-------------KFLATGA---------------------------------EDRLIRIWDIENRKIVMILQGHEQD 167 (393)
T ss_dssp TS-------------SEEEEEE---------------------------------TTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CC-------------CEEEEEc---------------------------------CCCeEEEEECCCCcEEEEEccCCCC
Confidence 65 3566432 136899999999999999875 468
Q ss_pred EEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc---cEEEEccC--Ceee
Q 001935 195 VCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASN--TLLL 266 (994)
Q Consensus 195 V~sV~~S~--~iLAVg-l~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp---RwLAyas~--~~~i 266 (994)
|.++++++ +.|+++ .++.|++||+.+.+...++..... ...+++.+ ++||.++. .+.+
T Consensus 168 v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~--------------v~~~~~~~~~~~~l~~~s~d~~v~i 233 (393)
T 1erj_A 168 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG--------------VTTVAVSPGDGKYIAAGSLDRAVRV 233 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC--------------EEEEEECSTTCCEEEEEETTSCEEE
T ss_pred EEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCC--------------cEEEEEECCCCCEEEEEcCCCcEEE
Confidence 99999987 466664 466899999999887776653211 23456655 67777653 4678
Q ss_pred ccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccC
Q 001935 267 SNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 346 (994)
Q Consensus 267 wd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s 346 (994)
|+... +.++..+..+ .....|. . .....+.++++++ .+++++
T Consensus 234 wd~~~-------------------~~~~~~~~~~--~~~~~~h-------~------~~v~~v~~~~~g~----~l~s~s 275 (393)
T 1erj_A 234 WDSET-------------------GFLVERLDSE--NESGTGH-------K------DSVYSVVFTRDGQ----SVVSGS 275 (393)
T ss_dssp EETTT-------------------CCEEEEEC--------CCC-------S------SCEEEEEECTTSS----EEEEEE
T ss_pred EECCC-------------------CcEEEeeccc--ccCCCCC-------C------CCEEEEEECCCCC----EEEEEe
Confidence 87311 1111100000 0000000 0 0001122223332 245778
Q ss_pred CCCeEEEEECCCC------------cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccc
Q 001935 347 NAGIVVVKDFVTR------------AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYD 414 (994)
Q Consensus 347 ~dG~V~VwDl~s~------------~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~ 414 (994)
.||.|+|||+.+. .+...+.+|...|.+++|+|+|.+|++++.||+ |+|||+.. |
T Consensus 276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~~-------~----- 342 (393)
T 1erj_A 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKS-------G----- 342 (393)
T ss_dssp TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTT-------C-----
T ss_pred CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe-EEEEECCC-------C-----
Confidence 9999999999753 356788899999999999999999999999665 99999853 3
Q ss_pred cCCcceEEEEEecccccccEEEEEEcc------CCCEEEEEeCCCeEEEEecCC
Q 001935 415 WNSSHVHLYKLHRGITSATIQDICFSH------YSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 415 ~~~s~~~l~~L~RG~t~a~I~sIaFSp------Dg~~LAsgS~dGTVhIw~I~~ 462 (994)
..+..+ +|+ ...|.+++|++ |+++||+++.||+|+||++..
T Consensus 343 -----~~~~~l-~~h-~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 343 -----NPLLML-QGH-RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp -----CEEEEE-ECC-SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred -----eEEEEE-CCC-CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 356666 454 45799999986 789999999999999999864
No 17
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.91 E-value=2e-22 Score=218.65 Aligned_cols=288 Identities=15% Similarity=0.140 Sum_probs=182.1
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCC------CcceEeeeeccCCEEEEEEecCCCCCCCCC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDA------SNFNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~------g~v~ells~hdGpV~~v~~lP~p~~s~~~D 124 (994)
..+|++.|..+.|.-.... .+++++|++|..+| ++|||+... +.....+..|.++|.++++.|++
T Consensus 17 l~gH~~~V~~~~~~~s~~~-~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~------- 88 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKE-NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN------- 88 (343)
T ss_dssp EECCSSCEEEEEECCCSST-TCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-------
T ss_pred eccchhhhhheeeEEEeec-CCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-------
Confidence 5679999999988421100 12456788887765 999999542 23456678899999999998765
Q ss_pred CccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC-
Q 001935 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP- 202 (994)
Q Consensus 125 ~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~S~V~sV~~S~- 202 (994)
.+|+..+ .+++|+|||+++++++.++.. ...|.++++++
T Consensus 89 ------~~l~s~s---------------------------------~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~ 129 (343)
T 2xzm_R 89 ------CFAISSS---------------------------------WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129 (343)
T ss_dssp ------TEEEEEE---------------------------------TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS
T ss_pred ------CEEEEEc---------------------------------CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC
Confidence 3555422 147999999999999999875 56899999987
Q ss_pred -CeEEEE-eCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc------------cEEEEccC--Ceee
Q 001935 203 -RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP------------RWLAYASN--TLLL 266 (994)
Q Consensus 203 -~iLAVg-l~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp------------RwLAyas~--~~~i 266 (994)
+.|+++ .++.|++||+.. +....+...... . . ....+++++ .+||.++. .+.+
T Consensus 130 ~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~----~--~----~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 198 (343)
T 2xzm_R 130 NRQILSAGAEREIKLWNILG-ECKFSSAEKENH----S--D----WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKV 198 (343)
T ss_dssp TTEEEEEETTSCEEEEESSS-CEEEECCTTTSC----S--S----CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEE
T ss_pred CCEEEEEcCCCEEEEEeccC-CceeeeecccCC----C--c----eeeeeeeccccccccccCCCCCEEEEEcCCCEEEE
Confidence 466654 566899999873 333222210000 0 0 012233333 34554442 3456
Q ss_pred ccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccC
Q 001935 267 SNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD 346 (994)
Q Consensus 267 wd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s 346 (994)
|+.... . ..++..+. .....+.+++.++ .+++++
T Consensus 199 wd~~~~--------------------~----------------~~~~~~h~------~~v~~~~~s~~g~----~l~sgs 232 (343)
T 2xzm_R 199 WNTNFQ--------------------I----------------RYTFKAHE------SNVNHLSISPNGK----YIATGG 232 (343)
T ss_dssp EETTTE--------------------E----------------EEEEECCS------SCEEEEEECTTSS----EEEEEE
T ss_pred EcCCCc--------------------e----------------eEEEcCcc------ccceEEEECCCCC----EEEEEc
Confidence 652100 0 00111110 0011122333333 245778
Q ss_pred CCCeEEEEECCCC-cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 347 NAGIVVVKDFVTR-AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 347 ~dG~V~VwDl~s~-~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
.||.|+|||+... .....+ .|..+|.+|+|+|+|.+|++++. ++ |+||++... . ...+..+
T Consensus 233 ~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~d-~~-v~iw~~~~~-------~--------~~~~~~~ 294 (343)
T 2xzm_R 233 KDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGTD-QG-VKIFNLMTQ-------S--------KAPVCTI 294 (343)
T ss_dssp TTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEES-SC-EEEEESSSC-------C--------SCSEEEC
T ss_pred CCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEECC-CC-EEEEEeCCC-------C--------CCceEEe
Confidence 9999999999543 333333 45678999999999999986653 55 999998642 0 0112222
Q ss_pred e----------cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 426 H----------RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 426 ~----------RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
. +| +...|.+++|+||+++|++|+.||+|+||++..
T Consensus 295 ~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 295 EAEPITKAEGQKG-KNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CCCSGGGBTTBCC-SCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred ecCcchhhhhhcC-CCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 2 13 345699999999999999999999999999854
No 18
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.91 E-value=4e-22 Score=219.97 Aligned_cols=275 Identities=11% Similarity=0.071 Sum_probs=185.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
..+|++.|..+.|.. +++.|++|..+| ++|||+. .++....+..|..+|..+++.|++.
T Consensus 62 l~gH~~~V~~~~~sp-------~~~~l~s~s~D~~v~iWd~~-~~~~~~~~~~h~~~v~~~~~s~~g~------------ 121 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTP-------EKNWIVSASQDGRLIVWNAL-TSQKTHAIKLHCPWVMECAFAPNGQ------------ 121 (380)
T ss_dssp ECCCSSCEEEEEECT-------TSSCEEEEETTSEEEEEETT-TTEEEEEEECCCTTCCCCEECTTSS------------
T ss_pred ccccccEEEEEEEcC-------CCCEEEEEeCCCeEEEEECC-CCccceEEecCCCCEEEEEECCCCC------------
Confidence 467999999999963 456777777766 9999995 5667778888999999999998762
Q ss_pred cEEEEEecCCCCC----------CC---C-CCCCCCccccccCCcCCCCCCC---CCCCCEEEEEECCCCeEEEEEe---
Q 001935 131 PFLLVVAGEDTNT----------LA---P-GQNRSHLGGVRDGMMDSQSGNC---VNSPTAVRFYSFQSHCYEHVLR--- 190 (994)
Q Consensus 131 pLLAvVsgd~~~~----------~~---~-~q~~~~~~~vr~g~~d~~~~~~---~~sp~tVrLWDlktge~V~tL~--- 190 (994)
+||..+.|+.-. .+ . ....++...+....+.+..+.. ...+++|++||+++++++..+.
T Consensus 122 -~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~ 200 (380)
T 3iz6_a 122 -SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200 (380)
T ss_dssp -EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred -EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence 334322111100 00 0 0000111111111111111110 1236899999999999998883
Q ss_pred ---CCCcEEEEEecC---CeEEEEe-CCeEEEEECCC-CceeEEEeecCCccccCCCccccccCccceEEcccEEEEccC
Q 001935 191 ---FRSSVCMVRCSP---RIVAVGL-ATQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN 262 (994)
Q Consensus 191 ---f~S~V~sV~~S~---~iLAVgl-~~~I~IwDa~T-le~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~ 262 (994)
+...|.++.+++ ++|+++. ++.|++||+.. .+.+.++..|..+ ...++ |.
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~-------------v~~v~-------~~-- 258 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD-------------INSVK-------FF-- 258 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC-------------CCEEE-------EC--
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC-------------eEEEE-------Ee--
Confidence 235799999965 5677655 66899999874 4555555544331 11122 21
Q ss_pred CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccc
Q 001935 263 TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG 342 (994)
Q Consensus 263 ~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~ 342 (994)
|++. .+
T Consensus 259 -------------------------p~~~-------------------------------------------------~l 264 (380)
T 3iz6_a 259 -------------------------PDGQ-------------------------------------------------RF 264 (380)
T ss_dssp -------------------------TTSS-------------------------------------------------EE
T ss_pred -------------------------cCCC-------------------------------------------------eE
Confidence 1111 12
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCC-------CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCcccc
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTS-------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDW 415 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHts-------pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~ 415 (994)
++++.||+|+|||+.+++.+..+..|.. .|.+++|+|+|++|++++.+|+ |+|||+.. +
T Consensus 265 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~~-------~------ 330 (380)
T 3iz6_a 265 GTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTLL-------A------ 330 (380)
T ss_dssp EEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETTT-------C------
T ss_pred EEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECCC-------C------
Confidence 3567899999999999998888876543 4899999999999999999776 99999853 2
Q ss_pred CCcceEEEEEe---cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 416 NSSHVHLYKLH---RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 416 ~~s~~~l~~L~---RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
..+..+. .+ +...|.+++|||||++|++||.||+|+||++..
T Consensus 331 ----~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 331 ----EMVLNLGTLQNS-HEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp ----CEEEEECCSCSS-CCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred ----ceEEEEecccCC-CCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 3445552 34 446799999999999999999999999999864
No 19
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.91 E-value=6.9e-22 Score=214.48 Aligned_cols=236 Identities=11% Similarity=0.104 Sum_probs=173.9
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC---cceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 54 ~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g---~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
.+...|..+.|. +++++|++|..++ ++|||+.... .+...+..|.+.|.++.+.|+.
T Consensus 95 ~~~~~v~~~~~s-------~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------ 155 (340)
T 1got_B 95 LRSSWVMTCAYA-------PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN------------ 155 (340)
T ss_dssp CSSSCEEEEEEC-------TTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT------------
T ss_pred cCCccEEEEEEC-------CCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC------------
Confidence 355556666664 3456777776665 8999996432 2345567889999999998654
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEE
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVA 206 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~S~V~sV~~S~--~iLA 206 (994)
.|+..+. +++|++||+++++++.++.. ...|.++++++ ++|+
T Consensus 156 --~l~s~s~---------------------------------d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 156 --QIVTSSG---------------------------------DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp --EEEEEET---------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred --cEEEEEC---------------------------------CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence 3443221 36899999999999999975 46899999988 4666
Q ss_pred EEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCC
Q 001935 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (994)
Q Consensus 207 Vgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~s 285 (994)
++. ++.|++||+.+.+.+.++..|..+ ... |+|.+
T Consensus 201 sg~~d~~v~~wd~~~~~~~~~~~~h~~~-------------v~~-------v~~~p------------------------ 236 (340)
T 1got_B 201 SGACDASAKLWDVREGMCRQTFTGHESD-------------INA-------ICFFP------------------------ 236 (340)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCCSSC-------------EEE-------EEECT------------------------
T ss_pred EEeCCCcEEEEECCCCeeEEEEcCCcCC-------------EEE-------EEEcC------------------------
Confidence 655 668999999998888777655431 011 22221
Q ss_pred cCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 001935 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (994)
Q Consensus 286 tSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~ 365 (994)
++.. +++++.||.|+|||+.+++.+..+
T Consensus 237 ---~~~~-------------------------------------------------l~s~s~d~~v~iwd~~~~~~~~~~ 264 (340)
T 1got_B 237 ---NGNA-------------------------------------------------FATGSDDATCRLFDLRADQELMTY 264 (340)
T ss_dssp ---TSSE-------------------------------------------------EEEEETTSCEEEEETTTTEEEEEE
T ss_pred ---CCCE-------------------------------------------------EEEEcCCCcEEEEECCCCcEEEEE
Confidence 1111 124568999999999998887776
Q ss_pred cc--CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 001935 366 KA--HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (994)
Q Consensus 366 ~a--HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg 443 (994)
.. |..+|.+++|+|+|++|++++.+|+ |+|||+.. + ..+..+ .|+ ...|.+++|+||+
T Consensus 265 ~~~~~~~~v~~~~~s~~g~~l~~g~~d~~-i~vwd~~~-------~----------~~~~~~-~~h-~~~v~~~~~s~dg 324 (340)
T 1got_B 265 SHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALK-------A----------DRAGVL-AGH-DNRVSCLGVTDDG 324 (340)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEEETTT-------C----------CEEEEE-ECC-SSCEEEEEECTTS
T ss_pred ccCCcccceEEEEECCCCCEEEEECCCCe-EEEEEccc-------C----------cEeeEe-ecC-CCcEEEEEEcCCC
Confidence 53 3458999999999999999999665 99999853 2 355555 454 4679999999999
Q ss_pred CEEEEEeCCCeEEEEe
Q 001935 444 QWIAIVSSKGTCHVFV 459 (994)
Q Consensus 444 ~~LAsgS~dGTVhIw~ 459 (994)
++||+++.||+|+||+
T Consensus 325 ~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 325 MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEcCCccEEecC
Confidence 9999999999999996
No 20
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.91 E-value=3.7e-22 Score=217.38 Aligned_cols=292 Identities=13% Similarity=0.108 Sum_probs=189.0
Q ss_pred CCCCCC-cEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcc--e-EeeeeccCCEEEEEEecCCCCCCCCCCc
Q 001935 52 SEDLKD-QVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNF--N-ELVSKRDGPVSFLQMQPFPVKDDGCEGF 126 (994)
Q Consensus 52 ~~~~kd-~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v--~-ells~hdGpV~~v~~lP~p~~s~~~D~F 126 (994)
..+|++ .|..+.|. +++++|++|..+| ++|||++. +.. . .+...|.++|.++++.|++
T Consensus 11 ~~~h~~~~v~~l~~s-------p~g~~las~~~D~~i~iw~~~~-~~~~~~~~~~~~h~~~v~~~~~sp~g--------- 73 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWN-------PAGTLLASCGGDRRIRIWGTEG-DSWICKSVLSEGHQRTVRKVAWSPCG--------- 73 (345)
T ss_dssp ECCSTTSCEEEEEEC-------TTSSCEEEEETTSCEEEEEEET-TEEEEEEEECSSCSSCEEEEEECTTS---------
T ss_pred ecCCCCCcEEEEEEC-------CCCCEEEEEcCCCeEEEEEcCC-CcceeeeeeccccCCcEEEEEECCCC---------
Confidence 345666 78888886 3566777777665 99999964 332 1 2335788999999999875
Q ss_pred cccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeCC-CcEEEEEecC-
Q 001935 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRFR-SSVCMVRCSP- 202 (994)
Q Consensus 127 ~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge--~V~tL~f~-S~V~sV~~S~- 202 (994)
.+||..+ .+++|+|||+.+++ ++.+++.+ ..|.+|+|++
T Consensus 74 ----~~l~s~s---------------------------------~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 116 (345)
T 3fm0_A 74 ----NYLASAS---------------------------------FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS 116 (345)
T ss_dssp ----SEEEEEE---------------------------------TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT
T ss_pred ----CEEEEEE---------------------------------CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC
Confidence 3666532 13689999998774 56777644 6899999987
Q ss_pred -CeEEEEe-CCeEEEEECCCCcee---EEEeecCCccccCCCccccccCccceEEcc--cEEEEccC--CeeeccCCccC
Q 001935 203 -RIVAVGL-ATQIYCFDALTLENK---FSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLS 273 (994)
Q Consensus 203 -~iLAVgl-~~~I~IwDa~Tle~l---~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~--~~~iwd~G~~s 273 (994)
++|+++. ++.|++||+.+.+.. ..+..|..+ ...++++| ++||.++. .+.+|+...
T Consensus 117 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~-------------v~~~~~~p~~~~l~s~s~d~~i~~w~~~~-- 181 (345)
T 3fm0_A 117 GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD-------------VKHVVWHPSQELLASASYDDTVKLYREEE-- 181 (345)
T ss_dssp SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC-------------EEEEEECSSSSCEEEEETTSCEEEEEEET--
T ss_pred CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC-------------eEEEEECCCCCEEEEEeCCCcEEEEEecC--
Confidence 5777655 568999999876543 333334331 23467766 67776653 456675210
Q ss_pred CCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEE
Q 001935 274 PQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVV 353 (994)
Q Consensus 274 ~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~V 353 (994)
+..+. ..++.++.. ....+.+++.++ .+++++.||+|+|
T Consensus 182 -----------------~~~~~--------------~~~~~~h~~------~v~~l~~sp~g~----~l~s~s~D~~v~i 220 (345)
T 3fm0_A 182 -----------------DDWVC--------------CATLEGHES------TVWSLAFDPSGQ----RLASCSDDRTVRI 220 (345)
T ss_dssp -----------------TEEEE--------------EEEECCCSS------CEEEEEECTTSS----EEEEEETTSCEEE
T ss_pred -----------------CCEEE--------------EEEecCCCC------ceEEEEECCCCC----EEEEEeCCCeEEE
Confidence 00000 011111110 011122333333 2457889999999
Q ss_pred EECCCC---------------cEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCC
Q 001935 354 KDFVTR---------------AIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (994)
Q Consensus 354 wDl~s~---------------~~i~~~~a-HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~ 417 (994)
||.... +++..+.+ |...|.+|+|+|+|.+||+++.+++ |+||++.+.. . ....
T Consensus 221 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~-----~----~~~~ 290 (345)
T 3fm0_A 221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNS-----D----PQQP 290 (345)
T ss_dssp EEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTS-----C----TTSC
T ss_pred eccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCC-----C----ccee
Confidence 996321 34555665 9999999999999999999999766 9999986420 0 0011
Q ss_pred cceEEEEEecccccccEEEEEEccCC-CEEEEEeCCCeEEEEecCCCC
Q 001935 418 SHVHLYKLHRGITSATIQDICFSHYS-QWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 418 s~~~l~~L~RG~t~a~I~sIaFSpDg-~~LAsgS~dGTVhIw~I~~~g 464 (994)
.......+.+|+ ...|.+|+|+|++ .+||++|.||+|+||++....
T Consensus 291 ~~~~~~~~~~~h-~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 291 TFSLTAHLHQAH-SQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp CEEEEEEETTSS-SSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred eEEEEeeecccc-cCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 111222333454 4679999999998 599999999999999987643
No 21
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.91 E-value=8.1e-22 Score=219.67 Aligned_cols=271 Identities=15% Similarity=0.137 Sum_probs=186.9
Q ss_pred CeEEEEEecCcEEEEEccCCCcceEeee--eccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCC
Q 001935 75 KQVLLLGYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (994)
Q Consensus 75 ~~vL~lGy~~G~qVWDv~~~g~v~ells--~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~ 152 (994)
.++|++|.++.++|||+. ++++..++. .|.+.|.+|+|.|++ .+||+.+
T Consensus 116 ~n~lAvgld~tV~lWd~~-tg~~~~~~~~~~~~~~V~sv~fspdg-------------~~lasgs--------------- 166 (420)
T 4gga_A 116 GNVLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKEG-------------NYLAVGT--------------- 166 (420)
T ss_dssp TSEEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTTS-------------SEEEEEE---------------
T ss_pred CCEEEEEeCCEEEEEECC-CCCEEEEEEecCCCCcEEEEEECCCC-------------CEEEEEE---------------
Confidence 469999999999999995 678888776 456789999999875 3666532
Q ss_pred ccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEeC-CeEEEEECCCCc-eeEEEee
Q 001935 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLA-TQIYCFDALTLE-NKFSVLT 229 (994)
Q Consensus 153 ~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~~iLAVgl~-~~I~IwDa~Tle-~l~tL~t 229 (994)
.+++|+|||+++++++.++..+ ..|.++.+++++|+++.. ..|++||..+.. .+.++..
T Consensus 167 ------------------~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~ 228 (420)
T 4gga_A 167 ------------------SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 228 (420)
T ss_dssp ------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC
T ss_pred ------------------CCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecc
Confidence 1368999999999999999765 589999999999988765 579999988754 3455555
Q ss_pred cCCccccCCCccccccCccceEEcc--cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhh
Q 001935 230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (994)
Q Consensus 230 ~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~l 305 (994)
|... ...+.+.+ ++|+..+. .+.+|+.... +.... .+
T Consensus 229 h~~~-------------~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~--~~~~~------------~~------------ 269 (420)
T 4gga_A 229 HSQE-------------VCGLRWAPDGRHLASGGNDNLVNVWPSAPG--EGGWV------------PL------------ 269 (420)
T ss_dssp CSSC-------------EEEEEECTTSSEEEEEETTSCEEEEESSCC--SSCSC------------CS------------
T ss_pred cccc-------------eeeeeecCCCCeeeeeeccccceEEeeccc--cccce------------ee------------
Confidence 5432 12344444 66766553 4567763110 00000 00
Q ss_pred hcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEE
Q 001935 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLV 385 (994)
Q Consensus 306 a~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLA 385 (994)
+....+. +.+....+++.... .+..+.++.||.|+|||+.+++.+..+..| ..|.++.|+|++..|+
T Consensus 270 -----~~~~~~~------~~V~~~~~~p~~~~-~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv 336 (420)
T 4gga_A 270 -----QTFTQHQ------GAVKAVAWCPWQSN-VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELI 336 (420)
T ss_dssp -----EEECCCS------SCEEEEEECTTCTT-EEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEE
T ss_pred -----eeecccC------CceeeeeeCCCccc-EEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEE
Confidence 0000000 00000011111110 001124578999999999999999888877 5788999999999999
Q ss_pred EEE--cCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 386 TAS--VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 386 TAS--~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
+++ .+| .|+|||+.. + .++.+| +|| ...|++|+|||||++||+++.||||+||++...
T Consensus 337 ~~sg~~d~-~I~iwd~~~-------~----------~~v~~l-~gH-~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 337 SGHGFAQN-QLVIWKYPT-------M----------AKVAEL-KGH-TSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EEECTTTC-CEEEEETTT-------C----------CEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred EEEecCCC-EEEEEECCC-------C----------cEEEEE-cCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 886 445 499999853 3 577777 464 467999999999999999999999999999754
Q ss_pred C
Q 001935 464 G 464 (994)
Q Consensus 464 g 464 (994)
.
T Consensus 397 ~ 397 (420)
T 4gga_A 397 D 397 (420)
T ss_dssp S
T ss_pred C
Confidence 3
No 22
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.3e-22 Score=219.56 Aligned_cols=291 Identities=13% Similarity=0.107 Sum_probs=195.9
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEE
Q 001935 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (994)
Q Consensus 55 ~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLL 133 (994)
+++.|..+.|.. ++++|++|..+| ++|||. .+.....+..|.++|..+++.|++ .+|
T Consensus 107 ~~~~v~~~~~s~-------~~~~l~~~~~dg~i~i~~~--~~~~~~~~~~~~~~v~~~~~~~~~-------------~~l 164 (425)
T 1r5m_A 107 TTNQVTCLAWSH-------DGNSIVTGVENGELRLWNK--TGALLNVLNFHRAPIVSVKWNKDG-------------THI 164 (425)
T ss_dssp -CBCEEEEEECT-------TSSEEEEEETTSCEEEEET--TSCEEEEECCCCSCEEEEEECTTS-------------SEE
T ss_pred CCCceEEEEEcC-------CCCEEEEEeCCCeEEEEeC--CCCeeeeccCCCccEEEEEECCCC-------------CEE
Confidence 466788888863 566888887776 999994 566777888899999999999865 356
Q ss_pred EEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC-c---------------EEE
Q 001935 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS-S---------------VCM 197 (994)
Q Consensus 134 AvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S-~---------------V~s 197 (994)
++.+. +++|++||+++++.+..+..+. . |.+
T Consensus 165 ~~~~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (425)
T 1r5m_A 165 ISMDV---------------------------------ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVD 211 (425)
T ss_dssp EEEET---------------------------------TCCEEEEETTTTEEEEEECCC---------------CCCBSC
T ss_pred EEEec---------------------------------CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeE
Confidence 65321 3679999999999999987654 3 777
Q ss_pred EEecC-CeEEE-EeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccC--CeeeccCCc
Q 001935 198 VRCSP-RIVAV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGR 271 (994)
Q Consensus 198 V~~S~-~iLAV-gl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~--~~~iwd~G~ 271 (994)
+.+++ ..+++ +.++.|++||+.+.+.+..+..+..+ ...+++++ ++|+.++. .+.+|+...
T Consensus 212 ~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 278 (425)
T 1r5m_A 212 VEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGP-------------ISVLEFNDTNKLLLSASDDGTLRIWHGGN 278 (425)
T ss_dssp CEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSC-------------EEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred EEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCc-------------eEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 88876 34444 55668999999998888777655432 23467765 67777653 467787321
Q ss_pred cCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeE
Q 001935 272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351 (994)
Q Consensus 272 ~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V 351 (994)
.. .+ ..+..+. .....+.+++.. .++.++.+|.|
T Consensus 279 ~~-------------------~~----------------~~~~~~~------~~i~~~~~~~~~-----~l~~~~~d~~i 312 (425)
T 1r5m_A 279 GN-------------------SQ----------------NCFYGHS------QSIVSASWVGDD-----KVISCSMDGSV 312 (425)
T ss_dssp BS-------------------CS----------------EEECCCS------SCEEEEEEETTT-----EEEEEETTSEE
T ss_pred Cc-------------------cc----------------eEecCCC------ccEEEEEECCCC-----EEEEEeCCCcE
Confidence 00 00 0000000 000001111111 23456789999
Q ss_pred EEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccC--CCCCCccccC-CcceEEEEEecc
Q 001935 352 VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS--GSGNHKYDWN-SSHVHLYKLHRG 428 (994)
Q Consensus 352 ~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~--~sG~~~~~~~-~s~~~l~~L~RG 428 (994)
+|||+.+++.+..+..|..+|.+++|+|+|++||+++.+|. |+||++....... ..+.....+. .....+..+ ++
T Consensus 313 ~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 390 (425)
T 1r5m_A 313 RLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ-VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-QS 390 (425)
T ss_dssp EEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC-EEEEECHHHHC--------------CEECCEEEEE-CC
T ss_pred EEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe-EEEEECCCCccceeeeecccccccCcccchhhhhh-cC
Confidence 99999999999999999999999999999999999999776 9999985310000 0000000000 000145555 44
Q ss_pred cccc-cEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 429 ITSA-TIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 429 ~t~a-~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
+... .|.+++|+||+++|++++.||+|+||+++
T Consensus 391 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 391 SQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp TTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 4433 89999999999999999999999999985
No 23
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.91 E-value=1.9e-22 Score=237.21 Aligned_cols=294 Identities=13% Similarity=0.108 Sum_probs=194.9
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcE
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpL 132 (994)
.-++.++.-+.|. ++++.|+.+..+.++|||+. .+....++..|.++|.+++|.|++ .+
T Consensus 15 ~~~~g~~~~~~~s-------pdg~~l~~~~~~~v~l~~~~-~~~~~~~~~~h~~~v~~~~~spdg-------------~~ 73 (611)
T 1nr0_A 15 RTARGTAVVLGNT-------PAGDKIQYCNGTSVYTVPVG-SLTDTEIYTEHSHQTTVAKTSPSG-------------YY 73 (611)
T ss_dssp CCCTTCCCCCEEC-------TTSSEEEEEETTEEEEEETT-CSSCCEEECCCSSCEEEEEECTTS-------------SE
T ss_pred CcccCceeEEeeC-------CCCCEEEeCCCCEEEEecCC-CcccCeEecCCCCceEEEEECCCC-------------cE
Confidence 3456666666775 46778899988889999995 466778889999999999999876 36
Q ss_pred EEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEe-CCCcEEEEEecC--CeEEE
Q 001935 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSP--RIVAV 207 (994)
Q Consensus 133 LAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge--~V~tL~-f~S~V~sV~~S~--~iLAV 207 (994)
||..+ .+++|+|||+.+++ ...++. +...|.+|+|++ +.|++
T Consensus 74 lasg~---------------------------------~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~ 120 (611)
T 1nr0_A 74 CASGD---------------------------------VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA 120 (611)
T ss_dssp EEEEE---------------------------------TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEE
T ss_pred EEEEe---------------------------------CCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEE
Confidence 67522 14789999997654 455665 457999999998 56776
Q ss_pred EeCC-----eEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--c-EEEEccC--CeeeccCCccCCCcC
Q 001935 208 GLAT-----QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--R-WLAYASN--TLLLSNSGRLSPQNL 277 (994)
Q Consensus 208 gl~~-----~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--R-wLAyas~--~~~iwd~G~~s~qsl 277 (994)
+.++ .|++||. .+...++..|..+ ...++|+| . .||.++. .+.+|+...
T Consensus 121 ~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~-------------v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~------ 179 (611)
T 1nr0_A 121 VGEGRERFGHVFLFDT--GTSNGNLTGQARA-------------MNSVDFKPSRPFRIISGSDDNTVAIFEGPP------ 179 (611)
T ss_dssp EECCSSCSEEEEETTT--CCBCBCCCCCSSC-------------EEEEEECSSSSCEEEEEETTSCEEEEETTT------
T ss_pred EECCCCceeEEEEeeC--CCCcceecCCCCC-------------ceEEEECCCCCeEEEEEeCCCeEEEEECCC------
Confidence 5543 5888884 3444444444331 24577777 2 4666653 467786310
Q ss_pred CCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECC
Q 001935 278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV 357 (994)
Q Consensus 278 tp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~ 357 (994)
+.+. +++.++... ...+.++++++ .+++++.||+|+|||+.
T Consensus 180 -------------~~~~----------------~~l~~H~~~------V~~v~fspdg~----~las~s~D~~i~lwd~~ 220 (611)
T 1nr0_A 180 -------------FKFK----------------STFGEHTKF------VHSVRYNPDGS----LFASTGGDGTIVLYNGV 220 (611)
T ss_dssp -------------BEEE----------------EEECCCSSC------EEEEEECTTSS----EEEEEETTSCEEEEETT
T ss_pred -------------CeEe----------------eeeccccCc------eEEEEECCCCC----EEEEEECCCcEEEEECC
Confidence 0000 111111110 11122333333 34578899999999999
Q ss_pred CCcEEEEec-------cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCC--CCCCcc------c--------
Q 001935 358 TRAIISQFK-------AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG--SGNHKY------D-------- 414 (994)
Q Consensus 358 s~~~i~~~~-------aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~--sG~~~~------~-------- 414 (994)
+++.+..+. +|..+|.+|+|+|||++|||++.|++ |+|||+........ .+.... .
T Consensus 221 ~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~-v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 299 (611)
T 1nr0_A 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS 299 (611)
T ss_dssp TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEE
T ss_pred CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe-EEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEE
Confidence 999988884 89999999999999999999999665 99999863100000 000000 0
Q ss_pred ---------cCC-cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 415 ---------WNS-SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 415 ---------~~~-s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
|.. ....+.. ..|+ ...|++++|+||+++|++++.||+|+||++...
T Consensus 300 ~s~d~~i~~~~~~~~~~~~~-~~gh-~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 300 ISANGFINFVNPELGSIDQV-RYGH-NKAITALSSSADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp EETTCCEEEEETTTTEEEEE-ECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EeCCCcEEEEeCCCCCcceE-EcCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence 000 0011122 2454 457999999999999999999999999999764
No 24
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.91 E-value=3.5e-22 Score=212.30 Aligned_cols=317 Identities=11% Similarity=0.000 Sum_probs=201.4
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEeeee-----ccCCEEEEEEecCCCCCCCCCCcc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSK-----RDGPVSFLQMQPFPVKDDGCEGFR 127 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~ells~-----hdGpV~~v~~lP~p~~s~~~D~F~ 127 (994)
++|.+.|..+.|.... ......+++++.++.++|||+.. ++....+.. |++.|.++++.|+..
T Consensus 15 ~~h~~~v~~i~~~p~~--~~~~~~~~~~~~~~~v~vw~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------- 82 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHS--KEGDPLVFATVGSNRVTLYECHS-QGEIRLLQSYVDADADENFYTCAWTYDSN--------- 82 (366)
T ss_dssp CTTCSCEEEEEECTTC--CTTSCEEEEEEETTEEEEEEECG-GGCEEEEEEEECSCTTCCEEEEEEEECTT---------
T ss_pred cCCCCceEEEEEeccc--CCCCceEEEECCCCEEEEEEcCC-CcEEEeeeeccccCCCCcEEEEEeccCCC---------
Confidence 5789999999997310 01134577777777899999964 444445543 447899999998741
Q ss_pred ccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecC---C
Q 001935 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP---R 203 (994)
Q Consensus 128 ~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~-f~S~V~sV~~S~---~ 203 (994)
..+.+|++.+ .+++|++||+.+++.+..+. +...|.++++++ +
T Consensus 83 ~~~~~l~~~~---------------------------------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 129 (366)
T 3k26_A 83 TSHPLLAVAG---------------------------------SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN 129 (366)
T ss_dssp TCCEEEEEEE---------------------------------TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTT
T ss_pred CCCCEEEEec---------------------------------CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCC
Confidence 1124666532 13689999999999999998 567999999987 5
Q ss_pred eEEEEe-CCeEEEEECCCCceeEEEe---ecCCccccCCCccccccCccceEEcc--cEEEEccC--CeeeccCCcc-CC
Q 001935 204 IVAVGL-ATQIYCFDALTLENKFSVL---TYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRL-SP 274 (994)
Q Consensus 204 iLAVgl-~~~I~IwDa~Tle~l~tL~---t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~--~~~iwd~G~~-s~ 274 (994)
+|+++. ++.|++||+.+.+.+..+. .+.. ....+++.+ ++|+.++. .+.+|+.... ..
T Consensus 130 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 196 (366)
T 3k26_A 130 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD-------------EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 196 (366)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECSTTSCSS-------------CEEEEEECTTSSEEEEEETTSCEEEEESCSHHHH
T ss_pred EEEEEeCCCeEEEEEeecCeEEEEecccccccC-------------ceeEEEECCCCCEEEEecCCCCEEEEECCCCccc
Confidence 677765 5689999999998887773 2322 124467766 67776653 5678874110 00
Q ss_pred CcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEE
Q 001935 275 QNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVK 354 (994)
Q Consensus 275 qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~Vw 354 (994)
+.+.. ...++|++..+..... .........+.. .......+.++ + -.+++++.||.|++|
T Consensus 197 ~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~------~~~~v~~~~~~-----~-~~l~~~~~d~~i~~w 256 (366)
T 3k26_A 197 NAIKE---SYDYNPNKTNRPFISQ-----KIHFPDFSTRDI------HRNYVDCVRWL-----G-DLILSKSCENAIVCW 256 (366)
T ss_dssp HHHHH---HHTCCGGGCSSCCCCE-----EECCCSEEECSS------CSSCCCEEEEE-----T-TEEEEECSSSEEEEE
T ss_pred cccce---eEEecCCCCcccccce-----eeccCccccccC------CcceEEEEEEc-----C-CEEEEEecCCEEEEE
Confidence 00000 0001111111000000 000000000000 00001111111 1 134567889999999
Q ss_pred ECCCCc--------------EEEEeccCCCCeEEEEECCC--CCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCc
Q 001935 355 DFVTRA--------------IISQFKAHTSPISALCFDPS--GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (994)
Q Consensus 355 Dl~s~~--------------~i~~~~aHtspIsaLaFSPd--GtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s 418 (994)
|+.++. .+..+..|..+|.+|+|+|+ |++||+++.+|. |+||++.. +. ..
T Consensus 257 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~-i~vwd~~~-------~~------~~ 322 (366)
T 3k26_A 257 KPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK-LYVWDLEV-------ED------PH 322 (366)
T ss_dssp EESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC-EEEEECCS-------SS------GG
T ss_pred eCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc-EEEEECCC-------CC------Cc
Confidence 998764 48899999999999999999 999999999776 99999864 21 01
Q ss_pred ceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 419 HVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 419 ~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
...+..+....+...|.+++|+||+++|++++.||+|+||++.
T Consensus 323 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 323 KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 1244455332225689999999999999999999999999985
No 25
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.1e-22 Score=220.51 Aligned_cols=255 Identities=18% Similarity=0.156 Sum_probs=176.5
Q ss_pred eEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEE
Q 001935 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (994)
Q Consensus 98 ~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrL 177 (994)
.+.+..|+++|.+|++.|+.. ....+|+..+ .+++|+|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~---------~~~~~l~tgs---------------------------------~D~~v~v 62 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKK---------ENSETVVTGS---------------------------------LDDLVKV 62 (321)
T ss_dssp EEETTSSSSCEEEEEEC----------------CEEEEEE---------------------------------TTSCEEE
T ss_pred eeecccCCCcEEEEEEecCCC---------CCCCEEEEEc---------------------------------CCCCEEE
Confidence 345567999999999987641 1123555422 2478999
Q ss_pred EECCCCeEEE--EEeC-CCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceE
Q 001935 178 YSFQSHCYEH--VLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMA 251 (994)
Q Consensus 178 WDlktge~V~--tL~f-~S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplA 251 (994)
||+.+++... +++. ...|.++++++ .+|+++. ++.|++||+.+.+.+.++..++.. ...++
T Consensus 63 W~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~-------------~~~~~ 129 (321)
T 3ow8_A 63 WKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD-------------AWTLA 129 (321)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC-------------CCCEE
T ss_pred EECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCcc-------------EEEEE
Confidence 9998886543 4543 35899999988 4666644 678999999999988888765441 23477
Q ss_pred Ecc--cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCC
Q 001935 252 VGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (994)
Q Consensus 252 lgp--RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s 327 (994)
++| ++||.++. .+.+|+... +.... ++... .....
T Consensus 130 ~spdg~~l~~g~~dg~v~i~~~~~-------------------~~~~~----------------~~~~~------~~~v~ 168 (321)
T 3ow8_A 130 FSPDSQYLATGTHVGKVNIFGVES-------------------GKKEY----------------SLDTR------GKFIL 168 (321)
T ss_dssp ECTTSSEEEEECTTSEEEEEETTT-------------------CSEEE----------------EEECS------SSCEE
T ss_pred ECCCCCEEEEEcCCCcEEEEEcCC-------------------CceeE----------------EecCC------CceEE
Confidence 777 78887764 355675310 00000 00000 00001
Q ss_pred CccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCC
Q 001935 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG 407 (994)
Q Consensus 328 ~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~ 407 (994)
.+.++++++ .+++++.||.|+|||+.+++.+..+.+|..+|.+|+|+|+|++||+++.+|+ |+|||+..
T Consensus 169 ~~~~spdg~----~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~------ 237 (321)
T 3ow8_A 169 SIAYSPDGK----YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQH------ 237 (321)
T ss_dssp EEEECTTSS----EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTT------
T ss_pred EEEECCCCC----EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCC------
Confidence 112233333 2456788999999999999999999999999999999999999999999776 99999853
Q ss_pred CCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcccccc
Q 001935 408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (994)
Q Consensus 408 sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H 472 (994)
+ ..+.++ .|+ ...|.+++|+||+++|++++.||+|+||++........+..|
T Consensus 238 -~----------~~~~~~-~~h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h 289 (321)
T 3ow8_A 238 -A----------NLAGTL-SGH-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH 289 (321)
T ss_dssp -C----------CEEEEE-CCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred -c----------ceeEEE-cCC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC
Confidence 2 355555 453 467999999999999999999999999999875544445455
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.90 E-value=2e-21 Score=204.02 Aligned_cols=273 Identities=13% Similarity=0.070 Sum_probs=187.7
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceE--eee--eccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNE--LVS--KRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 54 ~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~e--lls--~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
+|.+.|..+.|. +++++|++|.++.++|||++....... .+. .|.++|.++++.|++
T Consensus 49 ~h~~~v~~~~~~-------~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------ 109 (337)
T 1gxr_A 49 NHGEVVCAVTIS-------NPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG------------ 109 (337)
T ss_dssp CCSSCCCEEEEC-------SSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS------------
T ss_pred cCCCceEEEEEe-------cCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC------------
Confidence 466777777775 356788888866699999965432222 222 678999999999865
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEeC-CCcEEEEEecC--Ce
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLRF-RSSVCMVRCSP--RI 204 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge--~V~tL~f-~S~V~sV~~S~--~i 204 (994)
.+|++.+ .+++|++||+++++ .+..+.. ...|.++++++ +.
T Consensus 110 -~~l~~~~---------------------------------~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (337)
T 1gxr_A 110 -CTLIVGG---------------------------------EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV 155 (337)
T ss_dssp -SEEEEEE---------------------------------SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSE
T ss_pred -CEEEEEc---------------------------------CCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCE
Confidence 3556532 13689999999987 4555544 45799999987 46
Q ss_pred EEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccC--CeeeccCCccCCCcCCC
Q 001935 205 VAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTP 279 (994)
Q Consensus 205 LAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~--~~~iwd~G~~s~qsltp 279 (994)
|+++. ++.|++||+.+.+.+..+..+..+ ...+++.+ ++|+.++. .+.+|+...
T Consensus 156 l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------- 214 (337)
T 1gxr_A 156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-------------ASCIDISNDGTKLWTGGLDNTVRSWDLRE-------- 214 (337)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTSSEEEEEETTSEEEEEETTT--------
T ss_pred EEEEeCCCcEEEEeCCCCceeeeeecccCc-------------eEEEEECCCCCEEEEEecCCcEEEEECCC--------
Confidence 77665 568999999999888777655431 23466765 57776653 356776311
Q ss_pred CCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 001935 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (994)
Q Consensus 280 ~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~ 359 (994)
+..+..+.. ......+.+++..+ .++.+..+|.|++||+.++
T Consensus 215 -----------~~~~~~~~~-----------------------~~~v~~~~~s~~~~----~l~~~~~~~~i~~~~~~~~ 256 (337)
T 1gxr_A 215 -----------GRQLQQHDF-----------------------TSQIFSLGYCPTGE----WLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp -----------TEEEEEEEC-----------------------SSCEEEEEECTTSS----EEEEEETTSCEEEEETTSS
T ss_pred -----------CceEeeecC-----------------------CCceEEEEECCCCC----EEEEEcCCCcEEEEECCCC
Confidence 011100000 00000111222222 2345678999999999988
Q ss_pred cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 001935 360 AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (994)
Q Consensus 360 ~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaF 439 (994)
+. ..+..|..+|.+++|+|+|++|++++.+|. |+||++.. + ..+..+. +...|.+++|
T Consensus 257 ~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~~~~~-------~----------~~~~~~~---~~~~v~~~~~ 314 (337)
T 1gxr_A 257 DK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPY-------G----------ASIFQSK---ESSSVLSCDI 314 (337)
T ss_dssp CE-EEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTT-------C----------CEEEEEE---CSSCEEEEEE
T ss_pred Ce-EEEcCCccceeEEEECCCCCEEEEecCCCc-EEEEECCC-------C----------eEEEEec---CCCcEEEEEE
Confidence 75 478899999999999999999999999665 99999854 2 2343332 3467999999
Q ss_pred ccCCCEEEEEeCCCeEEEEec
Q 001935 440 SHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 440 SpDg~~LAsgS~dGTVhIw~I 460 (994)
+||+++|++++.||+|+||++
T Consensus 315 s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 315 SVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCCEEEEecCCCeEEEEEE
Confidence 999999999999999999997
No 27
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.2e-21 Score=212.12 Aligned_cols=285 Identities=11% Similarity=0.075 Sum_probs=181.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-cceEee-ee-ccCCEEEEEEecCCCCCCCCCCcc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELV-SK-RDGPVSFLQMQPFPVKDDGCEGFR 127 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g-~v~ell-s~-hdGpV~~v~~lP~p~~s~~~D~F~ 127 (994)
..+|++.|..+.|.. + +|++|..+| ++|||+.... .+..++ .. |.++|..|++.|++
T Consensus 10 ~~~h~~~v~~~~~s~-------~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~---------- 70 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQ-------G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT---------- 70 (330)
T ss_dssp EECCSSCEEEEEEET-------T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS----------
T ss_pred eccCCCceeeeccCC-------C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC----------
Confidence 457889999999873 2 677777665 9999995421 334444 33 88999999999865
Q ss_pred ccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECC-------CCeEEEEEeC-CCcEEEEE
Q 001935 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ-------SHCYEHVLRF-RSSVCMVR 199 (994)
Q Consensus 128 ~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlk-------tge~V~tL~f-~S~V~sV~ 199 (994)
.+||..+. +++|+|||+. +.+++.+++. ...|.+|+
T Consensus 71 ---~~las~s~---------------------------------D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 114 (330)
T 2hes_X 71 ---SLLAAGSF---------------------------------DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114 (330)
T ss_dssp ---SEEEEEET---------------------------------TSCEEEEEC-------CCCEEEEEEC----CEEEEE
T ss_pred ---CEEEEEeC---------------------------------CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEE
Confidence 36665321 3689999985 3456777764 46899999
Q ss_pred ecC--CeEEEEe-CCeEEEEECCC----CceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccC--Ceeecc
Q 001935 200 CSP--RIVAVGL-ATQIYCFDALT----LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSN 268 (994)
Q Consensus 200 ~S~--~iLAVgl-~~~I~IwDa~T----le~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~--~~~iwd 268 (994)
|++ ++||++. ++.|++||+.+ .+++.++..|..+ ...++++| ++||.++. .+.+|+
T Consensus 115 ~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~-------------v~~v~~~p~~~~l~s~s~D~~i~iW~ 181 (330)
T 2hes_X 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD-------------VKHVIWHPSEALLASSSYDDTVRIWK 181 (330)
T ss_dssp ECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC-------------EEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc-------------eEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 987 5777755 56899999943 2345555555432 24567766 67877663 467886
Q ss_pred CCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCC
Q 001935 269 SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA 348 (994)
Q Consensus 269 ~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~d 348 (994)
...... ..+ +++.++...+ ....+++... ...+++++.|
T Consensus 182 ~~~~~~-----------------~~~----------------~~~~~h~~~v------~~~~~~~~~~--~~~l~s~s~D 220 (330)
T 2hes_X 182 DYDDDW-----------------ECV----------------AVLNGHEGTV------WSSDFDKTEG--VFRLCSGSDD 220 (330)
T ss_dssp EETTEE-----------------EEE----------------EEECCCSSCE------EEEEECCSSS--SCEEEEEETT
T ss_pred CCCCCe-----------------eEE----------------EEccCCCCcE------EEEEecCCCC--eeEEEEEeCC
Confidence 310000 000 1111111000 0011112100 1124577899
Q ss_pred CeEEEEECCCC--------cEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcc
Q 001935 349 GIVVVKDFVTR--------AIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (994)
Q Consensus 349 G~V~VwDl~s~--------~~i~~~~a-HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~ 419 (994)
|+|+|||+.++ ..+..+.. |..+|.+|+|++++ +||+++.||+ |+||++.. + ..
T Consensus 221 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~-------~--------~~ 283 (330)
T 2hes_X 221 STVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVD-------G--------EW 283 (330)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEET-------T--------EE
T ss_pred CeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCC-------C--------ce
Confidence 99999999764 45566665 99999999999776 7899999776 99999753 2 01
Q ss_pred eEEEEEecccccccEEEEEEcc--CCCEEEEEeCCCeEEEEecCC
Q 001935 420 VHLYKLHRGITSATIQDICFSH--YSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSp--Dg~~LAsgS~dGTVhIw~I~~ 462 (994)
..+..+..++....|.+++|+| |+++||+++.||+|+||++..
T Consensus 284 ~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 284 KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 2233333454433799999999 799999999999999999864
No 28
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.90 E-value=9.7e-22 Score=224.78 Aligned_cols=316 Identities=17% Similarity=0.173 Sum_probs=209.5
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcE
Q 001935 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPF 132 (994)
Q Consensus 54 ~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpL 132 (994)
.|...|..+.|. ++++.|++|..+| ++|||. .++....+..|.++|..+++.|++ .+
T Consensus 219 ~~~~~v~~~~~s-------~dg~~l~~~~~d~~i~~w~~--~~~~~~~~~~~~~~v~~v~~~~d~-------------~~ 276 (577)
T 2ymu_A 219 GHSSSVRGVAFS-------PDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVNGVAFRPDG-------------QT 276 (577)
T ss_dssp CCSSCEEEEEEC-------TTSSCEEEEETTSCEEEECT--TSCEEEEECCCSSCEEEEEECTTS-------------SE
T ss_pred cCCCCEEEEEEC-------CCCCEEEEEeCCCEEEEEeC--CCCEEEEEecCCCCEEEEEEcCCC-------------CE
Confidence 355556666664 2456677776665 899996 456778888899999999998865 35
Q ss_pred EEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEEEEe
Q 001935 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL 209 (994)
Q Consensus 133 LAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~S~V~sV~~S~--~iLAVgl 209 (994)
|++.+. +++|++||. +++.+..+.. ...|+++++++ +.|+++.
T Consensus 277 l~~~~~---------------------------------d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~ 322 (577)
T 2ymu_A 277 IASASD---------------------------------DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 322 (577)
T ss_dssp EEEEET---------------------------------TSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEeC---------------------------------CCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEe
Confidence 554321 367999996 5677777764 46899999987 5677655
Q ss_pred -CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccC--CeeeccC-Ccc--CCCcCCCCC
Q 001935 210 -ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNS-GRL--SPQNLTPSG 281 (994)
Q Consensus 210 -~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~--~~~iwd~-G~~--s~qsltp~~ 281 (994)
++.|++||..+. .+..+..+..+ ...+++++ ++||.+.. .+.+|+. +.. .......++
T Consensus 323 ~d~~i~~w~~~~~-~~~~~~~~~~~-------------v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v 388 (577)
T 2ymu_A 323 DDKTVKLWNRNGQ-HLQTLTGHSSS-------------VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 388 (577)
T ss_dssp TTSCEEEEETTSC-EEEEECCCSSC-------------EEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCE
T ss_pred CCCeEEEEeCCCC-eeEEEeCCCCC-------------EEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCe
Confidence 567999997654 44555544331 23467776 67877654 3667874 221 111223345
Q ss_pred CCCCcCCCCCceEEEeehhhhhhh---hcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCC
Q 001935 282 VSPSTSPGGSSLVARYAMEHSKQF---AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (994)
Q Consensus 282 ~S~stSp~~gsLVa~~A~dssk~l---a~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s 358 (994)
..+.++|++..++.- ..+....+ .....+++..+.. ....+.++++.+ .+++++.||.|+|||. +
T Consensus 389 ~~~~~s~dg~~l~~~-~~d~~v~~~~~~~~~~~~~~~~~~------~v~~~~~s~d~~----~l~~~~~d~~v~~w~~-~ 456 (577)
T 2ymu_A 389 RGVAFSPDGQTIASA-SDDKTVKLWNRNGQLLQTLTGHSS------SVWGVAFSPDDQ----TIASASDDKTVKLWNR-N 456 (577)
T ss_dssp EEEEECTTSSCEEEE-ETTSEEEEECTTCCEEEEEECCSS------CEEEEEECTTSS----EEEEEETTSEEEEEET-T
T ss_pred EEEEECCCCCEEEEE-eCCCEEEEEeCCCCEEEEecCCCC------CeEEEEECCCCC----EEEEEcCCCEEEEEEC-C
Confidence 566778877666542 12211111 1111122222211 111223344433 2456788999999996 4
Q ss_pred CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 001935 359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC 438 (994)
Q Consensus 359 ~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIa 438 (994)
++.+..+.+|..+|.+|+|+|||++||+++.++ .|+||+.. | +.+.++. |+ ...|.+|+
T Consensus 457 ~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~-~i~iw~~~--------~----------~~~~~~~-~h-~~~v~~l~ 515 (577)
T 2ymu_A 457 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK-TVKLWNRN--------G----------QLLQTLT-GH-SSSVRGVA 515 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSCEEEEEETTS-EEEEEETT--------S----------CEEEEEE-CC-SSCEEEEE
T ss_pred CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-EEEEEcCC--------C----------CEEEEEe-CC-CCCEEEEE
Confidence 678889999999999999999999999999965 49999963 3 3566664 43 46799999
Q ss_pred EccCCCEEEEEeCCCeEEEEecCCCCCCccccccc
Q 001935 439 FSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (994)
Q Consensus 439 FSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~ 473 (994)
||||+++||+++.||+|+||++. ......+..|.
T Consensus 516 ~s~dg~~l~s~~~dg~v~lwd~~-~~~~~~~~~h~ 549 (577)
T 2ymu_A 516 FSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHS 549 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCS
T ss_pred EcCCCCEEEEEECcCEEEEEeCC-CCEEEEEcCCC
Confidence 99999999999999999999963 22233455664
No 29
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.90 E-value=1.1e-21 Score=208.19 Aligned_cols=290 Identities=16% Similarity=0.159 Sum_probs=196.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcce-EeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFN-ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~-ells~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
..+|++.|..+.|.. +..++++|++|..+| ++|||++..+... ..+..|.++|.++++.|++
T Consensus 35 ~~~h~~~v~~~~~~~----~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------ 98 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSP----PTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG------------ 98 (368)
T ss_dssp SSCCSSCEEEEEECC----TTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS------------
T ss_pred ccCCCCceEEEEEcC----CCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC------------
Confidence 467899999999974 111247888888776 8999997634443 7788899999999999865
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEe--cC--CeE
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRC--SP--RIV 205 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~--S~--~iL 205 (994)
.+|++.+ .+++|++||+++++.+....+...|.++++ ++ ++|
T Consensus 99 -~~l~s~~---------------------------------~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 144 (368)
T 3mmy_A 99 -SKVFTAS---------------------------------CDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCV 144 (368)
T ss_dssp -SEEEEEE---------------------------------TTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEE
T ss_pred -CEEEEEc---------------------------------CCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEE
Confidence 3566532 136899999999999988888899999999 66 356
Q ss_pred EEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccCCeeeccCCccCCCcCCCCCC
Q 001935 206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (994)
Q Consensus 206 AVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~~~~iwd~G~~s~qsltp~~~ 282 (994)
+++. ++.|++||+.+.+.+..+..+... ..+.+.. .+++.....+.+|+.... ...+.. .
T Consensus 145 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~--~ 207 (368)
T 3mmy_A 145 MTGSWDKTLKFWDTRSSNPMMVLQLPERC--------------YCADVIYPMAVVATAERGLIVYQLENQ-PSEFRR--I 207 (368)
T ss_dssp EEEETTSEEEEECSSCSSCSEEEECSSCE--------------EEEEEETTEEEEEEGGGCEEEEECSSS-CEEEEE--C
T ss_pred EEccCCCcEEEEECCCCcEEEEEecCCCc--------------eEEEecCCeeEEEeCCCcEEEEEeccc-cchhhh--c
Confidence 6554 678999999999888877654321 1122222 223344445667763110 000000 0
Q ss_pred CCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC---
Q 001935 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--- 359 (994)
Q Consensus 283 S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~--- 359 (994)
..+.... ..+..+.+. ..... ..++.++.+|.|+|||+...
T Consensus 208 ---~~~~~~~----------------------~~~~~~~~~---------~~~~~--~~~~~~~~dg~i~i~~~~~~~~~ 251 (368)
T 3mmy_A 208 ---ESPLKHQ----------------------HRCVAIFKD---------KQNKP--TGFALGSIEGRVAIHYINPPNPA 251 (368)
T ss_dssp ---CCSCSSC----------------------EEEEEEEEC---------TTSCE--EEEEEEETTSEEEEEESSCSCHH
T ss_pred ---cccccCC----------------------CceEEEccc---------CCCCC--CeEEEecCCCcEEEEecCCCCcc
Confidence 0000000 000000000 00000 01456788999999999987
Q ss_pred cEEEEeccCCC------------CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 360 AIISQFKAHTS------------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 360 ~~i~~~~aHts------------pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
..+..+.+|.. +|.+|+|+|+|++||+++.+|+ |+|||+.. + .++.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~-------~----------~~~~~~~- 312 (368)
T 3mmy_A 252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDA-------R----------TKLKTSE- 312 (368)
T ss_dssp HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTT-------T----------EEEEECC-
T ss_pred ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCC-------C----------cEEEEec-
Confidence 56788888877 7999999999999999999877 99999863 3 4666664
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
+ +...|++++|+||+++||+++.|+..+.|.+-...
T Consensus 313 ~-~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 313 Q-LDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp C-CSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred C-CCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence 3 34679999999999999999999987777665443
No 30
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.90 E-value=4e-22 Score=214.56 Aligned_cols=266 Identities=15% Similarity=0.146 Sum_probs=171.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-cceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g-~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
..+|++.|..+.|+. +++.|++|..++ ++|||+.... .+...+..|.++|..|++.|.. .
T Consensus 9 ~~~H~~~V~~v~~s~-------~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~-----------~ 70 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDY-------YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM-----------Y 70 (316)
T ss_dssp -----CCEEEEEECG-------GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG-----------G
T ss_pred cccccCeEEEeeEcC-------CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC-----------C
Confidence 467999999999974 456788887766 9999996432 2345677899999999997531 0
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEe-CCCcEEEEEecCC---
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSPR--- 203 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge--~V~tL~-f~S~V~sV~~S~~--- 203 (994)
..+||..+ .+++|+|||+++++ .+.++. +...|.+|++++.
T Consensus 71 ~~~l~s~s---------------------------------~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g 117 (316)
T 3bg1_A 71 GNILASCS---------------------------------YDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYG 117 (316)
T ss_dssp SSCEEEEE---------------------------------TTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTC
T ss_pred CCEEEEEE---------------------------------CCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCC
Confidence 13566532 14689999999884 566665 4468999999873
Q ss_pred -eEEEEe-CCeEEEEECCCCceeEEEe---ecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCC
Q 001935 204 -IVAVGL-ATQIYCFDALTLENKFSVL---TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLT 278 (994)
Q Consensus 204 -iLAVgl-~~~I~IwDa~Tle~l~tL~---t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qslt 278 (994)
+|+++. ++.|++||+.+........ .|.. ....++++ +...
T Consensus 118 ~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~-------------~v~~~~~~-------~~~~-------------- 163 (316)
T 3bg1_A 118 LILACGSSDGAISLLTYTGEGQWEVKKINNAHTI-------------GCNAVSWA-------PAVV-------------- 163 (316)
T ss_dssp SCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS-------------CBCCCEEC-------CCCC--------------
T ss_pred cEEEEEcCCCCEEEEecCCCCCcceeeeeccccC-------------CcceEEEc-------cccC--------------
Confidence 677765 5679999987653221111 1111 01112222 1100
Q ss_pred CCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCC
Q 001935 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (994)
Q Consensus 279 p~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s 358 (994)
.+.++.+ +.+.. .... ..+++++.||.|+|||+..
T Consensus 164 -----------~~~~~~~-------------------------~~~~~-----~~~~----~~l~sgs~D~~v~lWd~~~ 198 (316)
T 3bg1_A 164 -----------PGSLIDH-------------------------PSGQK-----PNYI----KRFASGGCDNLIKLWKEEE 198 (316)
T ss_dssp -----------C-------------------------------CCSCC-----CCCC----CBEECCBTTSBCCEEEECT
T ss_pred -----------Ccccccc-------------------------ccccC-----cccc----ceEEEecCCCeEEEEEeCC
Confidence 0000000 00000 0000 1245678999999999976
Q ss_pred C---cEEEEeccCCCCeEEEEECCCC----CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 001935 359 R---AIISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS 431 (994)
Q Consensus 359 ~---~~i~~~~aHtspIsaLaFSPdG----tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~ 431 (994)
. +.+..|.+|..+|.+++|+|+| .+|||+|.||+ |+||++.... .+ .+. ...+ .+ +.
T Consensus 199 ~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~-v~iw~~~~~~----~~----~~~--~~~~----~~-~~ 262 (316)
T 3bg1_A 199 DGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR-VFIWTCDDAS----SN----TWS--PKLL----HK-FN 262 (316)
T ss_dssp TSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE-EEEEECSSTT----CC----CCB--CCEE----EE-CS
T ss_pred CCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe-EEEEEccCcc----cc----chh--hhhh----hc-CC
Confidence 5 4678899999999999999997 89999999765 9999985310 00 000 0122 22 24
Q ss_pred ccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 432 ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 432 a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
..|++++|+||+++||+++.||+|+||++...
T Consensus 263 ~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 263 DVVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp SCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 67999999999999999999999999998653
No 31
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.90 E-value=3.7e-21 Score=205.51 Aligned_cols=242 Identities=15% Similarity=0.201 Sum_probs=176.3
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
..+...|..+.|.. +++.|++|..+| ++|||+. .++....+..|.+.|..+++.|+. +
T Consensus 52 ~~~~~~v~~~~~~~-------~~~~l~s~s~d~~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~-------------~ 110 (304)
T 2ynn_A 52 QVTETPVRAGKFIA-------RKNWIIVGSDDFRIRVFNYN-TGEKVVDFEAHPDYIRSIAVHPTK-------------P 110 (304)
T ss_dssp ECCSSCEEEEEEEG-------GGTEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECSSS-------------S
T ss_pred eccCCcEEEEEEeC-------CCCEEEEECCCCEEEEEECC-CCcEEEEEeCCCCcEEEEEEcCCC-------------C
Confidence 34566777777753 456788887776 9999995 567777888899999999998764 4
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCC-eEEEEEeC-CCcEEEEEecC---CeEE
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-CYEHVLRF-RSSVCMVRCSP---RIVA 206 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktg-e~V~tL~f-~S~V~sV~~S~---~iLA 206 (994)
+|+..+ .+++|+|||++++ .....+.. ...|.+++|+| .+|+
T Consensus 111 ~l~sgs---------------------------------~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~ 157 (304)
T 2ynn_A 111 YVLSGS---------------------------------DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (304)
T ss_dssp EEEEEE---------------------------------TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred EEEEEC---------------------------------CCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE
Confidence 666432 1468999999988 45566654 46899999987 4677
Q ss_pred EEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCC
Q 001935 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPS 285 (994)
Q Consensus 207 Vgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~s 285 (994)
++. ++.|++||+.+.+....+...... . ..++++...
T Consensus 158 sgs~D~~v~iwd~~~~~~~~~~~~~~~~---------------~----v~~~~~~~~----------------------- 195 (304)
T 2ynn_A 158 SGCLDRTVKVWSLGQSTPNFTLTTGQER---------------G----VNYVDYYPL----------------------- 195 (304)
T ss_dssp EEETTSEEEEEETTCSSCSEEEECCCTT---------------C----EEEEEECCS-----------------------
T ss_pred EEeCCCeEEEEECCCCCccceeccCCcC---------------c----EEEEEEEEc-----------------------
Confidence 655 668999999887766655432110 0 011222110
Q ss_pred cCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 001935 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (994)
Q Consensus 286 tSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~ 365 (994)
++ +. .+++++.||.|+|||+.+++++..+
T Consensus 196 --~~-~~------------------------------------------------~l~s~s~D~~i~iWd~~~~~~~~~~ 224 (304)
T 2ynn_A 196 --PD-KP------------------------------------------------YMITASDDLTIKIWDYQTKSCVATL 224 (304)
T ss_dssp --TT-CC------------------------------------------------EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred --CC-CC------------------------------------------------EEEEEcCCCeEEEEeCCCCccceee
Confidence 00 00 1235678999999999999999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-
Q 001935 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ- 444 (994)
Q Consensus 366 ~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~- 444 (994)
.+|..+|.+++|+|+|.+|||++.||+ |+|||+.. + +.+.++..+ ...|++++|+|+++
T Consensus 225 ~~h~~~v~~~~~~p~~~~l~s~s~Dg~-i~iWd~~~-------~----------~~~~~~~~~--~~~~~~~~~~~~~~~ 284 (304)
T 2ynn_A 225 EGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSST-------Y----------KVEKTLNVG--LERSWCIATHPTGRK 284 (304)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTT-------C----------CEEEEECCS--SSSEEEEEECTTCGG
T ss_pred CCCCCCEEEEEECCCCCEEEEEcCCCe-EEEEECCC-------C----------ceeeeccCC--CccEEEEEECCCCCc
Confidence 999999999999999999999999776 99999853 2 466677533 35799999999885
Q ss_pred -EEEEEeCCCeEEEEecCC
Q 001935 445 -WIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 445 -~LAsgS~dGTVhIw~I~~ 462 (994)
+||+|+++|+ .||.+..
T Consensus 285 ~~~asg~~~g~-~~~~~~~ 302 (304)
T 2ynn_A 285 NYIASGFDNGF-TVLSLGN 302 (304)
T ss_dssp GCEEEEETTEE-EEEECC-
T ss_pred eEEEEecCCce-EEEEecc
Confidence 6888877765 5777653
No 32
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.3e-21 Score=200.78 Aligned_cols=273 Identities=12% Similarity=0.076 Sum_probs=189.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
..+|++.|..+.| . ++..|++|..+| ++|||+. .+.....+..|.++|..+++.|++
T Consensus 14 l~~h~~~v~~~~~-~-------~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~------------- 71 (313)
T 3odt_A 14 LKGHDQDVRDVVA-V-------DDSKVASVSRDGTVRLWSKD-DQWLGTVVYTGQGFLNSVCYDSEK------------- 71 (313)
T ss_dssp ECCCSSCEEEEEE-E-------ETTEEEEEETTSEEEEEEES-SSEEEEEEEECSSCEEEEEEETTT-------------
T ss_pred hhCCCCCcEEEEe-c-------CCCEEEEEEcCCcEEEEECC-CCEEEEEeecCCccEEEEEECCCC-------------
Confidence 4678999999998 3 234677777766 9999994 567778888899999999999865
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCC---eEEEEEe-CCCcEEEEEecCCeEE
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH---CYEHVLR-FRSSVCMVRCSPRIVA 206 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktg---e~V~tL~-f~S~V~sV~~S~~iLA 206 (994)
.+|++.+. ++.|++|++... +.+..+. +...|.++.++++.|+
T Consensus 72 ~~l~~~~~---------------------------------dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 118 (313)
T 3odt_A 72 ELLLFGGK---------------------------------DTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVI 118 (313)
T ss_dssp TEEEEEET---------------------------------TSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEE
T ss_pred CEEEEecC---------------------------------CCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEE
Confidence 35665321 357999998654 5566675 4468999999988888
Q ss_pred EEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEc---ccEEEEccC--CeeeccCCccCCCcCCCC
Q 001935 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG---PRWLAYASN--TLLLSNSGRLSPQNLTPS 280 (994)
Q Consensus 207 Vgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlg---pRwLAyas~--~~~iwd~G~~s~qsltp~ 280 (994)
++. ++.|++|| ..+....+..+..+ ...+++. ..+|+.++. .+.+|+.+.. .+.+...
T Consensus 119 ~~~~d~~i~~~d--~~~~~~~~~~~~~~-------------v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~ 182 (313)
T 3odt_A 119 SGSWDKTAKVWK--EGSLVYNLQAHNAS-------------VWDAKVVSFSENKFLTASADKTIKLWQNDKV-IKTFSGI 182 (313)
T ss_dssp EEETTSEEEEEE--TTEEEEEEECCSSC-------------EEEEEEEETTTTEEEEEETTSCEEEEETTEE-EEEECSS
T ss_pred EEeCCCCEEEEc--CCcEEEecccCCCc-------------eeEEEEccCCCCEEEEEECCCCEEEEecCce-EEEEecc
Confidence 766 55899999 55666666655432 1223332 356665543 4567763211 0000000
Q ss_pred CCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 001935 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (994)
Q Consensus 281 ~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~ 360 (994)
..+ ....+.+++... ++.+..+|.|+|||+.+++
T Consensus 183 --------~~~---------------------------------~i~~~~~~~~~~-----~~~~~~dg~i~i~d~~~~~ 216 (313)
T 3odt_A 183 --------HND---------------------------------VVRHLAVVDDGH-----FISCSNDGLIKLVDMHTGD 216 (313)
T ss_dssp --------CSS---------------------------------CEEEEEEEETTE-----EEEEETTSEEEEEETTTCC
T ss_pred --------Ccc---------------------------------cEEEEEEcCCCe-----EEEccCCCeEEEEECCchh
Confidence 000 000011111111 3467789999999999999
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEc
Q 001935 361 IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFS 440 (994)
Q Consensus 361 ~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFS 440 (994)
.+..+.+|..+|.+|+|+|+| .|++++.+|+ |+||++.. + ..+..+. + +...|++++|+
T Consensus 217 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~-v~iwd~~~-------~----------~~~~~~~-~-~~~~i~~~~~~ 275 (313)
T 3odt_A 217 VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRT-VRIWSKEN-------G----------SLKQVIT-L-PAISIWSVDCM 275 (313)
T ss_dssp EEEEEECCSSCEEEEEECTTS-CEEEEETTSE-EEEECTTT-------C----------CEEEEEE-C-SSSCEEEEEEC
T ss_pred hhhhhhcCCceEEEEEEecCC-CEEEEecCCE-EEEEECCC-------C----------ceeEEEe-c-cCceEEEEEEc
Confidence 999999999999999999999 5888998665 99999864 2 3555554 3 34579999999
Q ss_pred cCCCEEEEEeCCCeEEEEecCCC
Q 001935 441 HYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 441 pDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
||++ |++++.||+|+||++...
T Consensus 276 ~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 276 SNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp TTSC-EEEEETTSCEEEEESCGG
T ss_pred cCCC-EEEEeCCCcEEEEeCCCC
Confidence 9999 557999999999998764
No 33
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.5e-21 Score=208.38 Aligned_cols=263 Identities=11% Similarity=0.108 Sum_probs=179.5
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC-CCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED-ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~-~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
..+|++.|..+.|.. ++++|++|..+| ++|||++. .......+..|.++|.++++.|+. .
T Consensus 7 ~~~h~~~v~~~~~s~-------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~ 68 (379)
T 3jrp_A 7 ANAHNELIHDAVLDY-------YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------F 68 (379)
T ss_dssp EEECCCCEEEEEECS-------SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-----------G
T ss_pred ecCCcccEEEEEEcC-------CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-----------C
Confidence 467899999999974 566788887665 99999963 334556677899999999998652 1
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEe-CCCcEEEEEecCC---
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSPR--- 203 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge--~V~tL~-f~S~V~sV~~S~~--- 203 (994)
..+|++.+. +++|+|||+++++ .+..+. +...|.++++++.
T Consensus 69 ~~~l~s~~~---------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 115 (379)
T 3jrp_A 69 GTILASCSY---------------------------------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 115 (379)
T ss_dssp CSEEEEEET---------------------------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred CCEEEEecc---------------------------------CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC
Confidence 236665331 3679999999997 566665 4568999999874
Q ss_pred -eEEE-EeCCeEEEEECCCCcee--EEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCC
Q 001935 204 -IVAV-GLATQIYCFDALTLENK--FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP 279 (994)
Q Consensus 204 -iLAV-gl~~~I~IwDa~Tle~l--~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp 279 (994)
+|++ +.++.|++||+.+.+.. ..+..+..+ . ..+++.......- +
T Consensus 116 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-------------v-------~~~~~~~~~~~~~--~--------- 164 (379)
T 3jrp_A 116 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-------------V-------NSASWAPATIEED--G--------- 164 (379)
T ss_dssp SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC-------------E-------EEEEECCCC----------------
T ss_pred CEEEEecCCCcEEEEecCCCCceeeEEecCCCCc-------------e-------EEEEEcCcccccc--c---------
Confidence 5665 44668999999887433 233333221 1 1222322100000 0
Q ss_pred CCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 001935 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (994)
Q Consensus 280 ~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~ 359 (994)
....+++ .. .++.++.||.|+|||+.++
T Consensus 165 ---~~~~~~~---------------------------------------------~~----~l~~~~~dg~i~i~d~~~~ 192 (379)
T 3jrp_A 165 ---EHNGTKE---------------------------------------------SR----KFVTGGADNLVKIWKYNSD 192 (379)
T ss_dssp --------CT---------------------------------------------TC----EEEEEETTSCEEEEEEETT
T ss_pred ---cccCCCC---------------------------------------------CC----EEEEEeCCCeEEEEEecCC
Confidence 0000000 00 1235678999999999875
Q ss_pred c----EEEEeccCCCCeEEEEECCC---CCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 001935 360 A----IISQFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 432 (994)
Q Consensus 360 ~----~i~~~~aHtspIsaLaFSPd---GtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a 432 (994)
. .+..+.+|..+|.+|+|+|+ |++||+++.+|. |+||++... . .......+....+..
T Consensus 193 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iwd~~~~-------~-------~~~~~~~~~~~~~~~ 257 (379)
T 3jrp_A 193 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNE-------Q-------GPWKKTLLKEEKFPD 257 (379)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEEESST-------T-------SCCEEEESSSSCCSS
T ss_pred CcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EEEEeCCCC-------C-------ccceeeeeccccCCC
Confidence 4 56788899999999999999 999999999776 999998641 0 001122222222456
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 433 ~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
.|++++|+||+++|++++.||+|+||++...
T Consensus 258 ~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 258 VLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp CEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred cEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 7999999999999999999999999999864
No 34
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.90 E-value=3.9e-22 Score=222.99 Aligned_cols=252 Identities=16% Similarity=0.204 Sum_probs=184.2
Q ss_pred eEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEE
Q 001935 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (994)
Q Consensus 98 ~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrL 177 (994)
...+.+|.++|.++.+.|+. ++|+..+ .+++|+|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~-------------~~l~s~s---------------------------------~Dg~i~v 134 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVF-------------SVMVSAS---------------------------------EDATIKV 134 (410)
T ss_dssp SCEEECCSSCEEEEEECSSS-------------SEEEEEE---------------------------------SSSCEEE
T ss_pred eEeecccCCcEEEEEEcCCC-------------CEEEEEe---------------------------------CCCeEEE
Confidence 45677899999999999864 4666432 1368999
Q ss_pred EECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEc
Q 001935 178 YSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVG 253 (994)
Q Consensus 178 WDlktge~V~tL~f~-S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlg 253 (994)
||+.+++++++++.+ ..|.+|+|++ ++|++|. ++.|++||+.+.+++.++..|..+ ...+++.
T Consensus 135 wd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~-------------V~~v~~~ 201 (410)
T 1vyh_C 135 WDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN-------------VSSVSIM 201 (410)
T ss_dssp EETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC-------------EEEEEEC
T ss_pred EECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCC-------------EEEEEEe
Confidence 999999999999865 6899999987 5777655 568999999999888777666442 2446776
Q ss_pred c--cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCc
Q 001935 254 P--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV 329 (994)
Q Consensus 254 p--RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~ 329 (994)
+ ++|+.++. .+.+|+... +..+ +++.++... ...+
T Consensus 202 p~~~~l~s~s~D~~i~~wd~~~-------------------~~~~----------------~~~~~h~~~------v~~~ 240 (410)
T 1vyh_C 202 PNGDHIVSASRDKTIKMWEVQT-------------------GYCV----------------KTFTGHREW------VRMV 240 (410)
T ss_dssp SSSSEEEEEETTSEEEEEETTT-------------------CCEE----------------EEEECCSSC------EEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCC-------------------CcEE----------------EEEeCCCcc------EEEE
Confidence 6 67776654 467787310 0110 111111000 0001
Q ss_pred cCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCC--------------------CCEEEEEEc
Q 001935 330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS--------------------GTLLVTASV 389 (994)
Q Consensus 330 s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPd--------------------GtlLATAS~ 389 (994)
.+++++. .+++++.||.|+|||+.+++.+..+.+|..+|.+++|+|+ |.+|+|++.
T Consensus 241 ~~~~~g~----~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~ 316 (410)
T 1vyh_C 241 RPNQDGT----LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316 (410)
T ss_dssp EECTTSS----EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred EECCCCC----EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC
Confidence 1122222 3457789999999999999999999999999999999997 789999999
Q ss_pred CCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccc
Q 001935 390 YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF 469 (994)
Q Consensus 390 dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~ 469 (994)
||+ |+|||+.. | .++..+. |+ ...|.+++|+|++++|++++.||+|+||++........+
T Consensus 317 D~~-i~iwd~~~-------~----------~~~~~~~-~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~ 376 (410)
T 1vyh_C 317 DKT-IKMWDVST-------G----------MCLMTLV-GH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376 (410)
T ss_dssp TSE-EEEEETTT-------T----------EEEEEEE-CC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred CCe-EEEEECCC-------C----------ceEEEEE-CC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence 665 99999863 3 4666664 43 457999999999999999999999999999876655566
Q ss_pred cccc
Q 001935 470 QTLS 473 (994)
Q Consensus 470 ~~H~ 473 (994)
..|.
T Consensus 377 ~~h~ 380 (410)
T 1vyh_C 377 NAHE 380 (410)
T ss_dssp ECCS
T ss_pred cCCC
Confidence 6664
No 35
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.90 E-value=7.7e-21 Score=208.39 Aligned_cols=225 Identities=14% Similarity=0.100 Sum_probs=168.5
Q ss_pred CCCeEEEEEecCc-EEEEEccCC-----CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCC
Q 001935 73 VFKQVLLLGYQNG-FQVLDVEDA-----SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAP 146 (994)
Q Consensus 73 ~~~~vL~lGy~~G-~qVWDv~~~-----g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~ 146 (994)
+++..|++|..++ ++||++... ......+..|.+.|..+.+.|+. ..|+..+.
T Consensus 116 p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~~l~t~s~-------- 174 (354)
T 2pbi_B 116 PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-------------MQILTASG-------- 174 (354)
T ss_dssp TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-------------SEEEEEET--------
T ss_pred CCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-------------CEEEEEeC--------
Confidence 3567788887766 899998532 12345667899999999998764 24554321
Q ss_pred CCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC----CeEEEEe-CCeEEEEECCC
Q 001935 147 GQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP----RIVAVGL-ATQIYCFDALT 220 (994)
Q Consensus 147 ~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~----~iLAVgl-~~~I~IwDa~T 220 (994)
+++|++||+++++++.++..+ ..|.++++++ ++|+++. ++.|++||+.+
T Consensus 175 -------------------------D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~ 229 (354)
T 2pbi_B 175 -------------------------DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229 (354)
T ss_dssp -------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT
T ss_pred -------------------------CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 478999999999999999754 6898888865 4677655 66899999999
Q ss_pred CceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehh
Q 001935 221 LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAME 300 (994)
Q Consensus 221 le~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~d 300 (994)
.+++.++..|..+ ... ++|.+ ++..
T Consensus 230 ~~~~~~~~~h~~~-------------v~~-------v~~~p---------------------------~~~~-------- 254 (354)
T 2pbi_B 230 GQCVQAFETHESD-------------VNS-------VRYYP---------------------------SGDA-------- 254 (354)
T ss_dssp CCEEEEECCCSSC-------------EEE-------EEECT---------------------------TSSE--------
T ss_pred CcEEEEecCCCCC-------------eEE-------EEEeC---------------------------CCCE--------
Confidence 9888777655432 111 22221 1111
Q ss_pred hhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC--CCCeEEEEEC
Q 001935 301 HSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH--TSPISALCFD 378 (994)
Q Consensus 301 ssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aH--tspIsaLaFS 378 (994)
+++++.||+|+|||+.+++.+..+..| ..++.+++|+
T Consensus 255 -----------------------------------------l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (354)
T 2pbi_B 255 -----------------------------------------FASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS 293 (354)
T ss_dssp -----------------------------------------EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred -----------------------------------------EEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence 224568999999999998887777654 4589999999
Q ss_pred CCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEE
Q 001935 379 PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458 (994)
Q Consensus 379 PdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw 458 (994)
|+|++|++++.+|+ |+|||+.. | ..+..+ .|+ ...|.+++||||+++||+++.||+|+||
T Consensus 294 ~~g~~l~~g~~d~~-i~vwd~~~-------~----------~~~~~l-~~h-~~~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 294 LSGRLLFAGYNDYT-INVWDVLK-------G----------SRVSIL-FGH-ENRVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp TTSSEEEEEETTSC-EEEEETTT-------C----------SEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred CCCCEEEEEECCCc-EEEEECCC-------C----------ceEEEE-ECC-CCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence 99999999999776 99999853 3 355555 354 4679999999999999999999999999
Q ss_pred e
Q 001935 459 V 459 (994)
Q Consensus 459 ~ 459 (994)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 5
No 36
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.89 E-value=1.8e-21 Score=211.10 Aligned_cols=286 Identities=12% Similarity=0.057 Sum_probs=195.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc------ceEeeeeccCCEEEEEEecCCCCCCCCC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN------FNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~------v~ells~hdGpV~~v~~lP~p~~s~~~D 124 (994)
..+|++.|..+.|+. .+|++|..+| ++|||++. ++ +...+..|.++|.++++.|+.
T Consensus 12 ~~~h~~~i~~~~~~~---------~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------- 74 (397)
T 1sq9_A 12 GKAHDADIFSVSACN---------SFTVSCSGDGYLKVWDNKL-LDNENPKDKSYSHFVHKSGLHHVDVLQAI------- 74 (397)
T ss_dssp SSCSSSCEEEEEECS---------SEEEEEETTSEEEEEESBC-CTTCCGGGGEEEEECCTTCEEEEEEEEEE-------
T ss_pred hhhhhcCeEEEEecC---------CeEEEEcCCCEEEEEECCC-cccccCCCcceEEecCCCcEEEEEEeccc-------
Confidence 467999999999962 4666666655 99999964 44 566777899999999999761
Q ss_pred CccccC---cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeE-----EEEEeCC----
Q 001935 125 GFRKLH---PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----EHVLRFR---- 192 (994)
Q Consensus 125 ~F~~sr---pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~-----V~tL~f~---- 192 (994)
.... .+|++.+ .+++|++||+.+++. +..+..+
T Consensus 75 --~~~g~~~~~l~s~~---------------------------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 119 (397)
T 1sq9_A 75 --ERDAFELCLVATTS---------------------------------FSGDLLFYRITREDETKKVIFEKLDLLDSDM 119 (397)
T ss_dssp --ETTTEEEEEEEEEE---------------------------------TTSCEEEEEEEECTTTCCEEEEEECCSCTTG
T ss_pred --ccCCccccEEEEEc---------------------------------CCCCEEEEEccCCcccccccceeeccccccc
Confidence 0001 2555432 136799999999886 7888655
Q ss_pred --CcEEEEEec----C--Ce-EEEEe-CCeEEEEECCC------CceeE-----EEee-------cCCccccCCCccccc
Q 001935 193 --SSVCMVRCS----P--RI-VAVGL-ATQIYCFDALT------LENKF-----SVLT-------YPVPQLAGQGAVGIN 244 (994)
Q Consensus 193 --S~V~sV~~S----~--~i-LAVgl-~~~I~IwDa~T------le~l~-----tL~t-------~p~p~~~~~g~~~vn 244 (994)
..|.+++++ + +. |+++. ++.|++||+.+ .+.+. ++.. +..
T Consensus 120 ~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 187 (397)
T 1sq9_A 120 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ------------ 187 (397)
T ss_dssp GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCC------------
T ss_pred CCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCC------------
Confidence 789999999 5 56 67654 56899999988 55554 5532 111
Q ss_pred cCccceEEccc-EEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeecc---ccc
Q 001935 245 VGYGPMAVGPR-WLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSK---YCQ 318 (994)
Q Consensus 245 v~~gplAlgpR-wLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~---y~~ 318 (994)
....+++.+. +|+.++. .+.+|+... +..+. ++.. +.
T Consensus 188 -~i~~~~~~~~~~l~~~~~dg~i~i~d~~~-------------------~~~~~----------------~~~~~~~h~- 230 (397)
T 1sq9_A 188 -FATSVDISERGLIATGFNNGTVQISELST-------------------LRPLY----------------NFESQHSMI- 230 (397)
T ss_dssp -CCCEEEECTTSEEEEECTTSEEEEEETTT-------------------TEEEE----------------EEECCC----
T ss_pred -CceEEEECCCceEEEEeCCCcEEEEECCC-------------------CceeE----------------EEecccccc-
Confidence 1234666653 6665543 356676310 01110 0000 00
Q ss_pred cccCCCCCCCccCCCccccccccccccCCC---CeEEEEECCCCcEEEEecc-------------CCCCeEEEEECCCCC
Q 001935 319 ELLPDGSSSPVSPNSVWKVGRHAGADMDNA---GIVVVKDFVTRAIISQFKA-------------HTSPISALCFDPSGT 382 (994)
Q Consensus 319 ~l~p~~s~s~~s~s~~~k~g~~~~as~s~d---G~V~VwDl~s~~~i~~~~a-------------HtspIsaLaFSPdGt 382 (994)
........+.+++..+ .++.+..+ |.|+|||+.+++.+..+.+ |..+|.+|+|+|+|+
T Consensus 231 --~~~~~i~~i~~~~~~~----~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 304 (397)
T 1sq9_A 231 --NNSNSIRSVKFSPQGS----LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 304 (397)
T ss_dssp --CCCCCEEEEEECSSTT----EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS
T ss_pred --ccCCccceEEECCCCC----EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC
Confidence 0000011112222222 23456677 9999999999999999999 999999999999999
Q ss_pred EEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-----cc--------------ccccEEEEEEccCC
Q 001935 383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-----GI--------------TSATIQDICFSHYS 443 (994)
Q Consensus 383 lLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R-----G~--------------t~a~I~sIaFSpDg 443 (994)
+||+++.+|+ |+||++.. + ..+.++.. ++ +...|++++|+||+
T Consensus 305 ~l~~~~~dg~-i~iwd~~~-------~----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 305 TLCSAGWDGK-LRFWDVKT-------K----------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp EEEEEETTSE-EEEEETTT-------T----------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred EEEEEeCCCe-EEEEEcCC-------C----------ceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence 9999999665 99999853 2 45666641 22 15679999999999
Q ss_pred ----------CEEEEEeCCCeEEEEecCC
Q 001935 444 ----------QWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 444 ----------~~LAsgS~dGTVhIw~I~~ 462 (994)
++|++++.||+|+||++..
T Consensus 367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 367 WRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp TSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred ccccccccccceEEEecCCCcEEEEEcCC
Confidence 7999999999999999865
No 37
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.89 E-value=5e-21 Score=199.59 Aligned_cols=280 Identities=13% Similarity=0.105 Sum_probs=179.2
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC---cceEeeeeccCCEEEEEEecCCCCCCCCCCcc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS---NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g---~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~ 127 (994)
..+|++.|..+.|.. ++++|++|..+| ++|||+.... .+...+..|.++|.++++.|..
T Consensus 7 ~~gH~~~v~~~~~~~-------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------- 69 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDF-------YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPE---------- 69 (351)
T ss_dssp ECCCSSCEEEEEECS-------SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGG----------
T ss_pred CcccccceeEEEEcC-------CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCC----------
Confidence 367999999999974 456788887766 9999996433 2445567789999999998731
Q ss_pred ccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCC---------eEEEEEeC-CCcEEE
Q 001935 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH---------CYEHVLRF-RSSVCM 197 (994)
Q Consensus 128 ~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktg---------e~V~tL~f-~S~V~s 197 (994)
...+|++.+ .+++|++||++++ +.+..+.. ...|.+
T Consensus 70 -d~~~l~s~~---------------------------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 115 (351)
T 3f3f_A 70 -YGRIIASAS---------------------------------YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS 115 (351)
T ss_dssp -GCSEEEEEE---------------------------------TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEE
T ss_pred -CCCEEEEEc---------------------------------CCCeEEEEecCCCcccccccCcceeeeecccCCceeE
Confidence 013666532 1368999999987 56777754 568999
Q ss_pred EEecCC----eEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCcc
Q 001935 198 VRCSPR----IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL 272 (994)
Q Consensus 198 V~~S~~----iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~ 272 (994)
+++++. +|+++. ++.|++||+.+.+.+..+...... ..+. +..
T Consensus 116 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------------~~~~-------~~~----------- 163 (351)
T 3f3f_A 116 VKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM--------------KVLS-------IPP----------- 163 (351)
T ss_dssp EEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE--------------ESCS-------CCC-----------
T ss_pred EEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc--------------cccc-------ccc-----------
Confidence 999864 566644 668999999887754332210000 0000 000
Q ss_pred CCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEE
Q 001935 273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV 352 (994)
Q Consensus 273 s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~ 352 (994)
......+..+.++| .. ++ . ..++.+..++.+.
T Consensus 164 --~~~~~~~~~~~~~p----------------------------------~~------~~--~----~~l~~~~~~~~~~ 195 (351)
T 3f3f_A 164 --ANHLQSDFCLSWCP----------------------------------SR------FS--P----EKLAVSALEQAII 195 (351)
T ss_dssp --SSCSCCCEEEEECC----------------------------------CS------SS--C----CEEEEEETTEEEE
T ss_pred --CCcccceeEEEecc----------------------------------CC------CC--C----cEEEEecCCCcEE
Confidence 00000000000000 00 00 0 0123456788898
Q ss_pred EEECCCCcE--EEEeccCCCCeEEEEECCCC----CEEEEEEcCCCeEEEEeCCCCcccCC-------------------
Q 001935 353 VKDFVTRAI--ISQFKAHTSPISALCFDPSG----TLLVTASVYGNNINIFRIMPSCMRSG------------------- 407 (994)
Q Consensus 353 VwDl~s~~~--i~~~~aHtspIsaLaFSPdG----tlLATAS~dGt~IrVwdi~p~~~~~~------------------- 407 (994)
+|+...++. +..+.+|..+|.+|+|+|+| ++||+++.+|+ |+|||+........
T Consensus 196 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (351)
T 3f3f_A 196 YQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDM 274 (351)
T ss_dssp EEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC-EEEEEEEECC-----------------------
T ss_pred EEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe-EEEEeCCCCcCccccCCcccceeccCCCccccc
Confidence 888887764 78889999999999999999 89999999776 99999863100000
Q ss_pred --CCC-------Ccccc-CCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 408 --SGN-------HKYDW-NSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 408 --sG~-------~~~~~-~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
.+. ...-| ......+..+ ++ +...|++++|+||+++|++++.||+|+||++...+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 275 DAQGRSDSNTEEKAELQSNLQVELLSEH-DD-HNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp ----------------CCSEEEEEEEEE-CT-TSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred ccccccccccceeeeecccccccEEEEE-ec-ccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 000 00000 0011344444 34 346799999999999999999999999999987543
No 38
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.89 E-value=2.3e-20 Score=195.32 Aligned_cols=268 Identities=14% Similarity=0.121 Sum_probs=181.6
Q ss_pred eEEEEEecCcEEEEEccCCCcceEeee--eccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCc
Q 001935 76 QVLLLGYQNGFQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (994)
Q Consensus 76 ~vL~lGy~~G~qVWDv~~~g~v~ells--~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~ 153 (994)
.+|++|.++.++|||++ ++++.+++. .|...|.+|++.|++ .+||+.+
T Consensus 37 ~~lAvg~D~tV~iWd~~-tg~~~~~~~~~~~~~~V~~v~~~~~~-------------~~l~sgs---------------- 86 (318)
T 4ggc_A 37 NVLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKEG-------------NYLAVGT---------------- 86 (318)
T ss_dssp SEEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTTS-------------SEEEEEE----------------
T ss_pred CEEEEEeCCEEEEEECC-CCCEEEEEEecCCCCeEEEEEECCCC-------------CEEEEEE----------------
Confidence 48999999999999995 577877775 456789999999865 3666422
Q ss_pred cccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEeCC-eEEEEECCCCc-eeEEEeec
Q 001935 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGLAT-QIYCFDALTLE-NKFSVLTY 230 (994)
Q Consensus 154 ~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~~iLAVgl~~-~I~IwDa~Tle-~l~tL~t~ 230 (994)
.+++|+|||+++++++.++..+ ..+..+...+++|+++..+ .+++|+..+.. .+.++..|
T Consensus 87 -----------------~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (318)
T 4ggc_A 87 -----------------SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH 149 (318)
T ss_dssp -----------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred -----------------CCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCc
Confidence 2478999999999999999765 5788999999988887654 68999877654 34445444
Q ss_pred CCccccCCCccccccCccceEEcc--cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhh
Q 001935 231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (994)
Q Consensus 231 p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la 306 (994)
... ...+++.+ ++|+.++. .+.+|+.... +..... +.... ..
T Consensus 150 ~~~-------------~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~------------~~~~~-------~~ 195 (318)
T 4ggc_A 150 SQE-------------VCGLRWAPDGRHLASGGNDNLVNVWPSAPG--EGGWVP------------LQTFT-------QH 195 (318)
T ss_dssp SSC-------------EEEEEECTTSSEEEEEETTSCEEEEESSCB--TTBSCC------------SEEEC-------CC
T ss_pred cCc-------------eEEEEEcCCCCEEEEEecCcceeEEECCCC--cccccc------------eeeec-------cc
Confidence 431 12344444 56665543 4678874210 000000 00000 00
Q ss_pred cccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 001935 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT 386 (994)
Q Consensus 307 ~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLAT 386 (994)
.+.+..+ ...+. .. ..+..+.+..++.|+|||......... ..|..+|..++|+|++..|++
T Consensus 196 ~~~v~~~-----~~~~~-----------~~-~~~~~~~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 196 QGAVKAV-----AWCPW-----------QS-NVLATGGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp CSCEEEE-----EECTT-----------ST-TEEEEEECTTTCEEEEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEE
T ss_pred CCceEEE-----EecCC-----------CC-cEEEEEecCCCCEEEEEeccccccccc-ccceeeeeeeeecccccceEE
Confidence 0000000 00011 00 001224567899999999998876654 456788999999999999988
Q ss_pred EE--cCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 387 AS--VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 387 AS--~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
++ .+| .|+|||+.. + +.+.+| +|| ...|++|+|+||+++||++|.||+|+||++..
T Consensus 258 ~sg~~d~-~i~iwd~~~-------~----------~~~~~l-~gH-~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 258 GHGFAQN-QLVIWKYPT-------M----------AKVAEL-KGH-TSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EECTTTC-CEEEEETTT-------C----------CEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEcCCC-EEEEEECCC-------C----------cEEEEE-cCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 76 445 499999853 3 477777 464 46799999999999999999999999999864
No 39
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.89 E-value=2.8e-21 Score=229.65 Aligned_cols=318 Identities=15% Similarity=0.134 Sum_probs=203.2
Q ss_pred hhcceeeeccCCcceeehhhhhcccccccccC--CCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC
Q 001935 19 ISSCLKTVSTNASTVASTVRSAGASVAASISN--ASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS 95 (994)
Q Consensus 19 ~s~~~~~~s~~a~~~~~~~~s~~~s~a~~i~~--~~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g 95 (994)
|...|.-+=+|..++...+..|...++..+.. ...+|++.|..+.|.. ....+|++|..+| ++|||+....
T Consensus 343 ~~~~~~~~~~G~~~~~~al~~a~~~~~~~l~~~~~l~~H~~~V~~v~~~~------~~~~~l~s~s~D~~i~~W~~~~~~ 416 (694)
T 3dm0_A 343 VRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPI------DNADIIVSASRDKSIILWKLTKDD 416 (694)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHCSSEEEEEEECCSSCEEEEECCT------TCCSEEEEEETTSEEEEEECCCST
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhhhcccchhhhcccCCceeEEEEecC------CCCCEEEEEeCCCcEEEEEccCCC
Confidence 33344334456666655555554444443332 3578999999999863 1245787777765 9999996432
Q ss_pred ----cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCC
Q 001935 96 ----NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNS 171 (994)
Q Consensus 96 ----~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~s 171 (994)
.....+..|.+.|.++.+.|++ .+|+..+ .
T Consensus 417 ~~~~~~~~~~~~h~~~v~~v~~s~~g-------------~~l~sgs---------------------------------~ 450 (694)
T 3dm0_A 417 KAYGVAQRRLTGHSHFVEDVVLSSDG-------------QFALSGS---------------------------------W 450 (694)
T ss_dssp TCSCEEEEEEECCSSCEEEEEECTTS-------------SEEEEEE---------------------------------T
T ss_pred cccccccceecCCCCcEEEEEECCCC-------------CEEEEEe---------------------------------C
Confidence 2345678899999999999865 3566432 1
Q ss_pred CCEEEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEeecCCccccCCCccccccCc
Q 001935 172 PTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f-~S~V~sV~~S~--~iLAVg-l~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~ 247 (994)
+++|+|||+.++++++++.. ...|.+|++++ +.|+++ .++.|++||.... +...+...... . .. ..
T Consensus 451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~----h-~~----~v 520 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTISEGGEG----H-RD----WV 520 (694)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEEECSSTTS----C-SS----CE
T ss_pred CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-cceeeccCCCC----C-CC----cE
Confidence 47899999999999999865 46899999987 456654 5668999997643 33333221100 0 00 12
Q ss_pred cceEEcc----cEEEEcc--CCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeecccccccc
Q 001935 248 GPMAVGP----RWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 321 (994)
Q Consensus 248 gplAlgp----RwLAyas--~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~ 321 (994)
..+++++ ..|+.++ ..+.+|+... +.+. .++.++..
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~-------------------~~~~----------------~~~~~h~~--- 562 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSN-------------------CKLR----------------STLAGHTG--- 562 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTT-------------------CCEE----------------EEECCCSS---
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECCC-------------------CcEE----------------EEEcCCCC---
Confidence 3456655 2455544 3567787311 0010 11111100
Q ss_pred CCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCC
Q 001935 322 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 322 p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (994)
....+.++++++ .+++++.||.|+|||+.+++.+..+..| ..|.+|+|+|+|.+|++++. + .|+|||+..
T Consensus 563 ---~v~~v~~spdg~----~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~-~-~i~iwd~~~ 632 (694)
T 3dm0_A 563 ---YVSTVAVSPDGS----LCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAATE-H-GIKIWDLES 632 (694)
T ss_dssp ---CEEEEEECTTSS----EEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEEEECSSSSEEEEEET-T-EEEEEETTT
T ss_pred ---CEEEEEEeCCCC----EEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEEEEcCCCcEEEEEcC-C-CEEEEECCC
Confidence 011112233332 3457789999999999999988888765 68999999999999998875 3 499999864
Q ss_pred CcccCCCCCCccccCCcceEEEEEeccc-----------------ccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGI-----------------TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 402 ~~~~~~sG~~~~~~~~s~~~l~~L~RG~-----------------t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
+ ..+.++.... +...|.+++|||||++|++|+.||+|+||++..+
T Consensus 633 -------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~~ 694 (694)
T 3dm0_A 633 -------K----------SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 694 (694)
T ss_dssp -------T----------EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred -------C----------CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccCC
Confidence 2 2333332100 0113789999999999999999999999998753
No 40
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.4e-22 Score=220.69 Aligned_cols=304 Identities=10% Similarity=0.041 Sum_probs=192.1
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC---CCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED---ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 54 ~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~---~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
.+.+.|..+.|. +++++|++|..+| ++|||+.. .......+..|.++|.++++.|+.
T Consensus 65 ~~~~~v~~~~~s-------~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------ 125 (416)
T 2pm9_A 65 QVDSKFNDLDWS-------HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ------------ 125 (416)
T ss_dssp CCSSCEEEEEEC-------SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS------------
T ss_pred ecCCceEEEEEC-------CCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCC------------
Confidence 367788888885 2556777776665 99999965 134667778899999999999862
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCe------EEEEE----eCCCcEEEEE
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC------YEHVL----RFRSSVCMVR 199 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge------~V~tL----~f~S~V~sV~ 199 (994)
..+|++.+ .+++|++||+++++ ....+ .+...|.+++
T Consensus 126 ~~~l~s~~---------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 126 DNVLASGG---------------------------------NNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp TTBEEEEC---------------------------------SSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred CCEEEEEc---------------------------------CCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 13555421 13679999999887 33333 2456899999
Q ss_pred ecCC---eEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc---cEEEEccC-----Ceeec
Q 001935 200 CSPR---IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASN-----TLLLS 267 (994)
Q Consensus 200 ~S~~---iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp---RwLAyas~-----~~~iw 267 (994)
++++ +|+++. ++.|++||+.+.+.+..+..+... .+ .......+++.+ .+|+.++. .+.+|
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~---~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~ 245 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN----SG---IKQQLSVVEWHPKNSTRVATATGSDNDPSILIW 245 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS----SC---CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc----cc---cCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence 9874 677655 557999999999888777654210 00 000134567766 46665543 56677
Q ss_pred cCCc--cCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCC-ccccccccccc
Q 001935 268 NSGR--LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS-VWKVGRHAGAD 344 (994)
Q Consensus 268 d~G~--~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~-~~k~g~~~~as 344 (994)
+... .....+. . .+. .....+.+++ +.. .+++
T Consensus 246 d~~~~~~~~~~~~----------------------------~-------~~~------~~v~~~~~s~~~~~----~l~s 280 (416)
T 2pm9_A 246 DLRNANTPLQTLN----------------------------Q-------GHQ------KGILSLDWCHQDEH----LLLS 280 (416)
T ss_dssp ETTSTTSCSBCCC----------------------------S-------CCS------SCEEEEEECSSCSS----CEEE
T ss_pred eCCCCCCCcEEee----------------------------c-------Ccc------CceeEEEeCCCCCC----eEEE
Confidence 6311 0000000 0 000 0000111122 122 2456
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 001935 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~ 423 (994)
++.||.|+|||+.+++.+..+.+|..+|.+++|+|+| .+||+++.+|+ |+||++...............-......++
T Consensus 281 ~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (416)
T 2pm9_A 281 SGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK-IEVQTLQNLTNTLDEQETETKQQESETDFW 359 (416)
T ss_dssp EESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE-EEEEESCCCCCSSCC---------------
T ss_pred EeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc-EEEEEccCCCCCcccccccccccCCccccc
Confidence 7789999999999999999999999999999999999 89999999665 999999642100000000000000000000
Q ss_pred E-----------------EecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 424 K-----------------LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 424 ~-----------------L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
. ..+. +...|.+++|||||++||+++.||+|+||++...
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 360 NNVSREESKEKPSVFHLQAPTW-YGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -------CCSCCCSSCCCCCST-TCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccccccCCcc-ccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 0 0000 2345778999999999999999999999998753
No 41
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.89 E-value=1.7e-20 Score=207.33 Aligned_cols=267 Identities=12% Similarity=0.068 Sum_probs=184.7
Q ss_pred CeEEEEEecCcEEEEEccCCCcceEeeee-ccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCc
Q 001935 75 KQVLLLGYQNGFQVLDVEDASNFNELVSK-RDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (994)
Q Consensus 75 ~~vL~lGy~~G~qVWDv~~~g~v~ells~-hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~ 153 (994)
..+++++.++.++|||++ .+.+..++.. |.++|.++++.|++ .+|++.+.
T Consensus 104 ~~l~~~~~d~~v~lw~~~-~~~~~~~~~~~~~~~v~~v~~s~~~-------------~~l~~~~~--------------- 154 (401)
T 4aez_A 104 LNVVAVALERNVYVWNAD-SGSVSALAETDESTYVASVKWSHDG-------------SFLSVGLG--------------- 154 (401)
T ss_dssp TSEEEEEETTEEEEEETT-TCCEEEEEECCTTCCEEEEEECTTS-------------SEEEEEET---------------
T ss_pred CCEEEEECCCeEEEeeCC-CCcEeEeeecCCCCCEEEEEECCCC-------------CEEEEECC---------------
Confidence 457777777779999995 4666666655 78899999999865 36665321
Q ss_pred cccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecCCeEEEEe-CCeEEEEECCC-CceeEEEeec
Q 001935 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPRIVAVGL-ATQIYCFDALT-LENKFSVLTY 230 (994)
Q Consensus 154 ~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~S~V~sV~~S~~iLAVgl-~~~I~IwDa~T-le~l~tL~t~ 230 (994)
+++|++||+.+++.+.++.. ...|.++++++++|+++. ++.|++||+.+ .+....+..|
T Consensus 155 ------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 216 (401)
T 4aez_A 155 ------------------NGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH 216 (401)
T ss_dssp ------------------TSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred ------------------CCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence 35799999999999999964 468999999998888766 55899999984 4455566555
Q ss_pred CCccccCCCccccccCccceEEcc--cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhh
Q 001935 231 PVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (994)
Q Consensus 231 p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la 306 (994)
..+ ...+++.+ ++|+.++. .+.+|+.... ..+.
T Consensus 217 ~~~-------------v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-------------------~~~~----------- 253 (401)
T 4aez_A 217 SSE-------------VCGLAWRSDGLQLASGGNDNVVQIWDARSS-------------------IPKF----------- 253 (401)
T ss_dssp SSC-------------EEEEEECTTSSEEEEEETTSCEEEEETTCS-------------------SEEE-----------
T ss_pred CCC-------------eeEEEEcCCCCEEEEEeCCCeEEEccCCCC-------------------CccE-----------
Confidence 432 23467765 67877764 5678874210 0000
Q ss_pred cccceeeccccccccCCCCCCCccCCCccccccccccc--cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEE
Q 001935 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGAD--MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLL 384 (994)
Q Consensus 307 ~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as--~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlL 384 (994)
++..+ ......+.+++.... .++. +..||.|++||+.+++.+..+. |..+|.+++|+|+|++|
T Consensus 254 -----~~~~~------~~~v~~~~~~p~~~~---ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l 318 (401)
T 4aez_A 254 -----TKTNH------NAAVKAVAWCPWQSN---LLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEI 318 (401)
T ss_dssp -----EECCC------SSCCCEEEECTTSTT---EEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEE
T ss_pred -----EecCC------cceEEEEEECCCCCC---EEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeE
Confidence 00000 000011112221111 1223 3479999999999999988886 66789999999999999
Q ss_pred EEEE--cCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 385 VTAS--VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 385 ATAS--~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
++++ .+| .|+||++.. + ....+.++. + +...|.+++|+||+++|++++.||+|+||++..
T Consensus 319 ~~~~g~~dg-~i~v~~~~~-------~--------~~~~~~~~~-~-h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 319 MSTHGFPDN-NLSIWSYSS-------S--------GLTKQVDIP-A-HDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EEEECTTTC-EEEEEEEET-------T--------EEEEEEEEE-C-CSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred EEEeecCCC-cEEEEecCC-------c--------cceeEEEec-C-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 9975 545 599999853 1 112334443 4 346799999999999999999999999999976
Q ss_pred CC
Q 001935 463 FG 464 (994)
Q Consensus 463 ~g 464 (994)
..
T Consensus 381 ~~ 382 (401)
T 4aez_A 381 GD 382 (401)
T ss_dssp --
T ss_pred Cc
Confidence 54
No 42
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.89 E-value=1.8e-20 Score=202.06 Aligned_cols=265 Identities=15% Similarity=0.154 Sum_probs=179.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeee-------------eccCCEEEEEEecCC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVS-------------KRDGPVSFLQMQPFP 117 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells-------------~hdGpV~~v~~lP~p 117 (994)
...|++.|..+.|.. .++++|++|..+| ++|||+.. +.....+. .|.++|..+++.|+.
T Consensus 39 ~~~h~~~v~~~~~s~------~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 111 (408)
T 4a11_B 39 ERIHGGGINTLDIEP------VEGRYMLSGGSDGVIVLYDLEN-SSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD 111 (408)
T ss_dssp CCCCSSCEEEEEECT------TTCCEEEEEETTSCEEEEECCC-CSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred eeccCCcEEEEEEec------CCCCEEEEEcCCCeEEEEECCC-CcccceEeccccccccccccccCCCcEEEEEEccCC
Confidence 456899999999962 1456788877666 99999964 33333332 488999999999832
Q ss_pred CCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEE
Q 001935 118 VKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCM 197 (994)
Q Consensus 118 ~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~s 197 (994)
..+|+..+ .+++|++||+++++.+..+.+...+..
T Consensus 112 ------------~~~l~s~~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~ 146 (408)
T 4a11_B 112 ------------TGMFTSSS---------------------------------FDKTLKVWDTNTLQTADVFNFEETVYS 146 (408)
T ss_dssp ------------TTCEEEEE---------------------------------TTSEEEEEETTTTEEEEEEECSSCEEE
T ss_pred ------------CcEEEEEe---------------------------------CCCeEEEeeCCCCccceeccCCCceee
Confidence 12555432 136899999999999999999999999
Q ss_pred EEecC-----CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCc
Q 001935 198 VRCSP-----RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGR 271 (994)
Q Consensus 198 V~~S~-----~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~ 271 (994)
+.+.+ .+|+++. ++.|++||+.+.+.+..+..+..+ ...++ +.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------------v~~~~-------~~~---------- 196 (408)
T 4a11_B 147 HHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE-------------ILAVS-------WSP---------- 196 (408)
T ss_dssp EEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSC-------------EEEEE-------ECS----------
T ss_pred eEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCc-------------EEEEE-------ECC----------
Confidence 99976 2666655 568999999998877777654331 11122 221
Q ss_pred cCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeE
Q 001935 272 LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351 (994)
Q Consensus 272 ~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V 351 (994)
++..+ +++++.||.|
T Consensus 197 -----------------~~~~l------------------------------------------------l~~~~~dg~i 211 (408)
T 4a11_B 197 -----------------RYDYI------------------------------------------------LATASADSRV 211 (408)
T ss_dssp -----------------SCTTE------------------------------------------------EEEEETTSCE
T ss_pred -----------------CCCcE------------------------------------------------EEEEcCCCcE
Confidence 11111 1234578888
Q ss_pred EEEECCCCc-EEEEe---------------ccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCC-CCC----
Q 001935 352 VVKDFVTRA-IISQF---------------KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG-SGN---- 410 (994)
Q Consensus 352 ~VwDl~s~~-~i~~~---------------~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~-sG~---- 410 (994)
+|||+.++. .+..+ .+|..+|.+|+|+|+|++|++++.+|. |+||++........ .+.
T Consensus 212 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~ 290 (408)
T 4a11_B 212 KLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR-MRLWNSSNGENTLVNYGKVCNN 290 (408)
T ss_dssp EEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCBCCCCCCCCCCC
T ss_pred EEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe-EEEEECCCCccceecccccccc
Confidence 999987654 33444 689999999999999999999999776 99999864210000 000
Q ss_pred --Cccc----------------------cC-CcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 411 --HKYD----------------------WN-SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 411 --~~~~----------------------~~-~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
.... |. .....+..+ .+ +...|.+++|+||+++|++++.||+|+||++.....
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 291 SKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML-KG-HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp CSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-CC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred ccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-cc-CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 0000 00 111334444 34 346799999999999999999999999999987654
Q ss_pred C
Q 001935 466 D 466 (994)
Q Consensus 466 ~ 466 (994)
.
T Consensus 369 ~ 369 (408)
T 4a11_B 369 V 369 (408)
T ss_dssp -
T ss_pred c
Confidence 3
No 43
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.88 E-value=8.4e-20 Score=192.87 Aligned_cols=280 Identities=14% Similarity=0.098 Sum_probs=182.9
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC----cceEeeeeccCCEEEEEEecCCCCCCCCCCc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS----NFNELVSKRDGPVSFLQMQPFPVKDDGCEGF 126 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g----~v~ells~hdGpV~~v~~lP~p~~s~~~D~F 126 (994)
..+|++.|..+.|.. ..+++|++|..+| ++|||+.... .....+..|.++|.++.+.|++
T Consensus 34 L~GH~~~V~~v~~sp------~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg--------- 98 (340)
T 4aow_A 34 LKGHNGWVTQIATTP------QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG--------- 98 (340)
T ss_dssp ECCCSSCEEEEEECT------TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS---------
T ss_pred ECCccCCEEEEEEeC------CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC---------
Confidence 568999999999962 1246787777665 9999996432 1345667889999999999865
Q ss_pred cccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--C
Q 001935 127 RKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--R 203 (994)
Q Consensus 127 ~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--~ 203 (994)
.+|+..+ .++.|++|+...+......... ..+..+.+++ +
T Consensus 99 ----~~l~s~~---------------------------------~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (340)
T 4aow_A 99 ----QFALSGS---------------------------------WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141 (340)
T ss_dssp ----SEEEEEE---------------------------------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred ----CEEEEEc---------------------------------ccccceEEeecccceeeeecCCCCceeEEEEeecCc
Confidence 3556432 1468999999999988877654 4666777765 5
Q ss_pred eEEEE-eCCeEEEEECCCCceeEEEe-ecCCccccCCCccccccCccceEEcc----cEEEEccC--CeeeccCCccCCC
Q 001935 204 IVAVG-LATQIYCFDALTLENKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGP----RWLAYASN--TLLLSNSGRLSPQ 275 (994)
Q Consensus 204 iLAVg-l~~~I~IwDa~Tle~l~tL~-t~p~p~~~~~g~~~vnv~~gplAlgp----RwLAyas~--~~~iwd~G~~s~q 275 (994)
.|+++ .++.+++||+.......... .+.. ....+++.+ .+++.++. .+.+|+...
T Consensus 142 ~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~-------------~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~---- 204 (340)
T 4aow_A 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSE-------------WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN---- 204 (340)
T ss_dssp CEEEEETTSCEEEECTTSCEEEEECSSSCSS-------------CEEEEEECSCSSSCEEEEEETTSCEEEEETTT----
T ss_pred cceeecCCCeEEEEEeCCCceEEEEeccccC-------------cccceEEccCCCCcEEEEEcCCCEEEEEECCC----
Confidence 66655 46689999987654322211 1211 012344433 33444332 355666311
Q ss_pred cCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEE
Q 001935 276 NLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKD 355 (994)
Q Consensus 276 sltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwD 355 (994)
+.++. ++..+. +....+.+++..+ .+++++.||.|+|||
T Consensus 205 ---------------~~~~~----------------~~~~h~------~~v~~~~~s~~~~----~l~s~s~Dg~i~iwd 243 (340)
T 4aow_A 205 ---------------CKLKT----------------NHIGHT------GYLNTVTVSPDGS----LCASGGKDGQAMLWD 243 (340)
T ss_dssp ---------------TEEEE----------------EECCCS------SCEEEEEECTTSS----EEEEEETTCEEEEEE
T ss_pred ---------------Cceee----------------EecCCC------CcEEEEEECCCCC----EEEEEeCCCeEEEEE
Confidence 01110 111100 0001112223322 245678999999999
Q ss_pred CCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe--------c
Q 001935 356 FVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH--------R 427 (994)
Q Consensus 356 l~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~--------R 427 (994)
+.+.+.+..+..| .+|.+++|+|++.+|+.+. +| .|+||++.. + ..+.++. .
T Consensus 244 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~-d~-~i~iwd~~~-------~----------~~~~~~~~~~~~~~~~ 303 (340)
T 4aow_A 244 LNEGKHLYTLDGG-DIINALCFSPNRYWLCAAT-GP-SIKIWDLEG-------K----------IIVDELKQEVISTSSK 303 (340)
T ss_dssp TTTTEEEEEEECS-SCEEEEEECSSSSEEEEEE-TT-EEEEEETTT-------T----------EEEEEECCC-------
T ss_pred eccCceeeeecCC-ceEEeeecCCCCceeeccC-CC-EEEEEECCC-------C----------eEEEeccccceeeecc
Confidence 9999998888866 6899999999998776554 34 599999853 1 2333332 2
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
+ +...|++|+|+||+++|++|+.||+|+||++..
T Consensus 304 ~-h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 304 A-EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp C-CCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred C-CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 3 345799999999999999999999999999976
No 44
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.88 E-value=8.4e-21 Score=206.60 Aligned_cols=280 Identities=14% Similarity=0.102 Sum_probs=186.4
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCC-eEEEEEecCc-EEEEEccCCCcceEeee--eccCCEEEEEEecCCCCCCCCCCcc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFK-QVLLLGYQNG-FQVLDVEDASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFR 127 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~-~vL~lGy~~G-~qVWDv~~~g~v~ells--~hdGpV~~v~~lP~p~~s~~~D~F~ 127 (994)
..+|.+.|..+.|.. ++ ++|++|..+| ++|||+. .+.....+. .|.++|.++++.|+.
T Consensus 69 ~~~h~~~v~~~~~~~-------~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~h~~~v~~~~~~~~~---------- 130 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHP-------THPTTVAVGSKGGDIILWDYD-VQNKTSFIQGMGPGDAITGMKFNQFN---------- 130 (383)
T ss_dssp ECCCSSCEEEEEECS-------SCTTEEEEEEBTSCEEEEETT-STTCEEEECCCSTTCBEEEEEEETTE----------
T ss_pred ccCCCCCEEEEEECC-------CCCCEEEEEcCCCeEEEEeCC-CcccceeeecCCcCCceeEEEeCCCC----------
Confidence 467889999999974 33 6777777765 9999996 455555554 588999999999731
Q ss_pred ccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-C---CcEEEEEecC-
Q 001935 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-R---SSVCMVRCSP- 202 (994)
Q Consensus 128 ~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~---S~V~sV~~S~- 202 (994)
..+|++.+ .+++|++||+++ ..+..+.. . ..|.++++++
T Consensus 131 --~~~l~s~~---------------------------------~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~ 174 (383)
T 3ei3_B 131 --TNQLFVSS---------------------------------IRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVS 174 (383)
T ss_dssp --EEEEEEEE---------------------------------TTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETT
T ss_pred --CCEEEEEe---------------------------------CCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCC
Confidence 13555432 146899999996 45555532 2 5799999987
Q ss_pred -CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--c-EEEEccC--CeeeccCCccCCC
Q 001935 203 -RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--R-WLAYASN--TLLLSNSGRLSPQ 275 (994)
Q Consensus 203 -~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--R-wLAyas~--~~~iwd~G~~s~q 275 (994)
++|+++. ++.|++||+ +.+.+.++..|..+ ...+++.+ + +|+.++. .+.+|+......
T Consensus 175 ~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~-------------v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~- 239 (383)
T 3ei3_B 175 RQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAK-------------VTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD- 239 (383)
T ss_dssp TTEEEEEETTSEEEEEET-TSCEEEEEECSSSC-------------EEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS-
T ss_pred CCEEEEECCCCCEEEEEC-CCCEEEEeccCCCc-------------EEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc-
Confidence 5677655 568999998 56777777766542 24577776 3 6766653 467787421000
Q ss_pred cCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCC-ccccccccccccCCCCeEEEE
Q 001935 276 NLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS-VWKVGRHAGADMDNAGIVVVK 354 (994)
Q Consensus 276 sltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~-~~k~g~~~~as~s~dG~V~Vw 354 (994)
.+.++.... + ......+.+++ .++ .++.++.||.|+||
T Consensus 240 --------------~~~~~~~~~-----------------~------~~~v~~~~~s~~~~~----~l~~~~~d~~i~iw 278 (383)
T 3ei3_B 240 --------------KNSYIAEMP-----------------H------EKPVNAAYFNPTDST----KLLTTDQRNEIRVY 278 (383)
T ss_dssp --------------TTCEEEEEE-----------------C------SSCEEEEEECTTTSC----EEEEEESSSEEEEE
T ss_pred --------------ccceEEEec-----------------C------CCceEEEEEcCCCCC----EEEEEcCCCcEEEE
Confidence 011111000 0 00011112222 222 23467789999999
Q ss_pred ECCCCcEEEEeccCC-----------------CCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCC
Q 001935 355 DFVTRAIISQFKAHT-----------------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (994)
Q Consensus 355 Dl~s~~~i~~~~aHt-----------------spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~ 417 (994)
|+.+++.+..+..|. .++.+++|+|+|++ +++.+|+ |+|||+.. +
T Consensus 279 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~-i~iwd~~~-------~-------- 340 (383)
T 3ei3_B 279 SSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT-IDIYDANS-------G-------- 340 (383)
T ss_dssp ETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC-EEEEETTT-------C--------
T ss_pred ECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe-EEEEecCC-------C--------
Confidence 999988777777653 34555777777777 6777665 99999864 3
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 418 s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
..+.++....+...+..++|+||+++||+++ ||+|+||+++.
T Consensus 341 --~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 341 --GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp --CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred --ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 4677775433456788889999999999997 89999999864
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.88 E-value=1e-20 Score=207.10 Aligned_cols=252 Identities=14% Similarity=0.112 Sum_probs=176.7
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCC
Q 001935 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (994)
Q Consensus 74 ~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~ 152 (994)
+++.|++|..+| ++|||+. .+....++..|.++|.++++.|++ .+|++.+
T Consensus 108 ~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~-------------~~l~s~s--------------- 158 (420)
T 3vl1_A 108 QMRRFILGTTEGDIKVLDSN-FNLQREIDQAHVSEITKLKFFPSG-------------EALISSS--------------- 158 (420)
T ss_dssp SSCEEEEEETTSCEEEECTT-SCEEEEETTSSSSCEEEEEECTTS-------------SEEEEEE---------------
T ss_pred CCCEEEEEECCCCEEEEeCC-CcceeeecccccCccEEEEECCCC-------------CEEEEEe---------------
Confidence 456788877765 9999995 577777788899999999999865 3666532
Q ss_pred ccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEe
Q 001935 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVL 228 (994)
Q Consensus 153 ~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~l~tL~ 228 (994)
.+++|++||+++++.+.++.. ...|.++++++ +.|+++. ++.|++||+.+.+.+.++.
T Consensus 159 ------------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 220 (420)
T 3vl1_A 159 ------------------QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220 (420)
T ss_dssp ------------------TTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred ------------------CCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee
Confidence 136899999999999999874 57899999987 4666655 5679999999999888877
Q ss_pred ecCCccccCCCccccccCccceEEcccEEEEccCC-eeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhc
Q 001935 229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNT-LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (994)
Q Consensus 229 t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~-~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~ 307 (994)
.+..+. . .... +++.... ..+.. ....++..+.++|
T Consensus 221 ~~~~~~------~----~v~~-------~~~~~~~~~~~~~-------~~~~~v~~~~~s~------------------- 257 (420)
T 3vl1_A 221 RKENPH------D----GVNS-------IALFVGTDRQLHE-------ISTSKKNNLEFGT------------------- 257 (420)
T ss_dssp BTTBTT------C----CEEE-------EEEEECCCSSCGG-------GCCCCCCTTCSSC-------------------
T ss_pred cCCCCC------C----CccE-------EEEecCCcceeee-------cccCcccceEEcC-------------------
Confidence 543210 0 0111 2222110 00000 0001112222222
Q ss_pred ccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec-cCCCCeEEEEECCCCC-EEE
Q 001935 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-AHTSPISALCFDPSGT-LLV 385 (994)
Q Consensus 308 Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~-aHtspIsaLaFSPdGt-lLA 385 (994)
.++ .++.+..+|.|+|||+.+++.+..+. .|..+|.+|+|+|+|. +|+
T Consensus 258 --------------------------~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 307 (420)
T 3vl1_A 258 --------------------------YGK----YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIY 307 (420)
T ss_dssp --------------------------TTE----EEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEE
T ss_pred --------------------------CCC----EEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEE
Confidence 222 12356789999999999998776665 5899999999999999 999
Q ss_pred EEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 386 TASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 386 TAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
+++.+|+ |+|||+.. +. ..+..+. +++...|.++.| +|+++|++++.||+|+||++....
T Consensus 308 ~g~~dg~-i~vwd~~~-------~~---------~~~~~~~-~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 308 AGYENGM-LAQWDLRS-------PE---------CPVGEFL-INEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp EEETTSE-EEEEETTC-------TT---------SCSEEEE-ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred EEeCCCe-EEEEEcCC-------Cc---------Cchhhhh-ccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence 9999765 99999963 21 1234443 335567888855 588999999999999999998743
No 46
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.88 E-value=3.3e-21 Score=204.53 Aligned_cols=302 Identities=12% Similarity=0.109 Sum_probs=188.2
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEec---Cc-EEEEEccCCCcceEe-eeeccCCEEEEEEecCCCCCCCCCCcc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQ---NG-FQVLDVEDASNFNEL-VSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~---~G-~qVWDv~~~g~v~el-ls~hdGpV~~v~~lP~p~~s~~~D~F~ 127 (994)
.+|.+.|..+.|.. ....+|++|.. +| ++|||+.. ++...+ ...|.++|.++++.|+..
T Consensus 15 ~~h~~~v~~~~~~p------~~~~l~~~~s~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~--------- 78 (357)
T 3i2n_A 15 KGFNYTVFDCKWVP------CSAKFVTMGNFARGTGVIQLYEIQH-GDLKLLREIEKAKPIKCGTFGATSL--------- 78 (357)
T ss_dssp EECSSCEEEEEECT------TSSEEEEEEC--CCCEEEEEEEECS-SSEEEEEEEEESSCEEEEECTTCCT---------
T ss_pred cCCCCceEEEEEcC------CCceEEEecCccCCCcEEEEEeCCC-CcccceeeecccCcEEEEEEcCCCC---------
Confidence 45888999999963 12367777764 44 99999964 545434 336889999999987620
Q ss_pred ccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCe-EEEEEeC-CCcEEEEEe-----
Q 001935 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-YEHVLRF-RSSVCMVRC----- 200 (994)
Q Consensus 128 ~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge-~V~tL~f-~S~V~sV~~----- 200 (994)
.+.+|++.+. +++|++||+.+++ .+..+.. ...|.++.+
T Consensus 79 -~~~~l~~~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 124 (357)
T 3i2n_A 79 -QQRYLATGDF---------------------------------GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLG 124 (357)
T ss_dssp -TTCCEEEEET---------------------------------TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGG
T ss_pred -CCceEEEecC---------------------------------CCeEEEEeCCCCCccEEEEEecccceEEEeeccccc
Confidence 0135665321 3679999999988 8888864 468999965
Q ss_pred -cC--CeEEEEe-CCeEEEEECCCCc-eeEEEeecCCccccCCCccccccCccceE----Ecc--cEEEEccC--Ceeec
Q 001935 201 -SP--RIVAVGL-ATQIYCFDALTLE-NKFSVLTYPVPQLAGQGAVGINVGYGPMA----VGP--RWLAYASN--TLLLS 267 (994)
Q Consensus 201 -S~--~iLAVgl-~~~I~IwDa~Tle-~l~tL~t~p~p~~~~~g~~~vnv~~gplA----lgp--RwLAyas~--~~~iw 267 (994)
++ +.|+++. ++.|++||+.+.+ .+..+..+.... .. ....++ +++ ++|+.++. .+.+|
T Consensus 125 ~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-----~~----~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 195 (357)
T 3i2n_A 125 IGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN-----KR----DCWTVAFGNAYNQEERVVCAGYDNGDIKLF 195 (357)
T ss_dssp CC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC-----CC----CEEEEEEECCCC-CCCEEEEEETTSEEEEE
T ss_pred cCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC-----CC----ceEEEEEEeccCCCCCEEEEEccCCeEEEE
Confidence 33 4677655 5689999999887 566665433210 00 012233 223 67776654 46677
Q ss_pred cCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCC---ccccccccccc
Q 001935 268 NSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS---VWKVGRHAGAD 344 (994)
Q Consensus 268 d~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~---~~k~g~~~~as 344 (994)
+... +....... + ......+.+++ ... .++.
T Consensus 196 d~~~-------------------~~~~~~~~-----------------~------~~~v~~~~~~~~~~~~~----~l~~ 229 (357)
T 3i2n_A 196 DLRN-------------------MALRWETN-----------------I------KNGVCSLEFDRKDISMN----KLVA 229 (357)
T ss_dssp ETTT-------------------TEEEEEEE-----------------C------SSCEEEEEESCSSSSCC----EEEE
T ss_pred ECcc-------------------CceeeecC-----------------C------CCceEEEEcCCCCCCCC----EEEE
Confidence 6311 00000000 0 00000111111 111 2345
Q ss_pred cCCCCeEEEEECCCCcEEEEec-----cCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEeCCCCcccC---CCCCCcccc
Q 001935 345 MDNAGIVVVKDFVTRAIISQFK-----AHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRS---GSGNHKYDW 415 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~-----aHtspIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~~~~~---~sG~~~~~~ 415 (994)
+..+|.|+|||+.+++.+..+. +|..+|.+++|+|+|. +|++++.+|. |+||++....... ..|. ....
T Consensus 230 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~g~-~~~~ 307 (357)
T 3i2n_A 230 TSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKYEYPIQRSKKDSEGI-EMGV 307 (357)
T ss_dssp EESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEEEECCSCC--CCTTSC-CCCC
T ss_pred ECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEeecCCCcccccccCCCC-cccc
Confidence 6789999999998876554444 9999999999999999 8999999765 9999986320000 0000 0000
Q ss_pred CCcceEEEEEecccccccEEEEEEccCCCEEE-EEeCCCeEEEEecCCC
Q 001935 416 NSSHVHLYKLHRGITSATIQDICFSHYSQWIA-IVSSKGTCHVFVLSPF 463 (994)
Q Consensus 416 ~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LA-sgS~dGTVhIw~I~~~ 463 (994)
......+..+. + +...|.+++|+||+++|+ +++.||+|+||++...
T Consensus 308 ~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 308 AGSVSLLQNVT-L-STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCEEEEEEEEE-C-CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccccceeeccc-c-CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 11223555554 3 346799999999999999 7999999999999754
No 47
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.88 E-value=9.7e-21 Score=202.60 Aligned_cols=313 Identities=12% Similarity=0.091 Sum_probs=193.5
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc--ceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 54 ~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~--v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
.|.+.|..+.|.. ++++|++|..+| ++|||++ .++ ....+..|.++|.++++.|++
T Consensus 6 ~~~~~i~~~~~s~-------~~~~l~~~~~d~~v~i~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~------------- 64 (372)
T 1k8k_C 6 FLVEPISCHAWNK-------DRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDS------------- 64 (372)
T ss_dssp SCSSCCCEEEECT-------TSSEEEEECSSSEEEEEEEE-TTEEEEEEEEECCSSCEEEEEEETTT-------------
T ss_pred ccCCCeEEEEECC-------CCCEEEEEeCCCEEEEEeCC-CCcEEeeeeecCCCCcccEEEEeCCC-------------
Confidence 3677888888863 567888885555 9999995 454 566777899999999999865
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe---CCCcEEEEEecC--CeE
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSP--RIV 205 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~---f~S~V~sV~~S~--~iL 205 (994)
.+|++.+. +++|++||+++++....+. +...|.++++++ ++|
T Consensus 65 ~~l~~~~~---------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 111 (372)
T 1k8k_C 65 NRIVTCGT---------------------------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF 111 (372)
T ss_dssp TEEEEEET---------------------------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEE
T ss_pred CEEEEEcC---------------------------------CCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEE
Confidence 35665321 3679999999998766654 456899999987 577
Q ss_pred EEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccC--CeeeccCCc--cCCCcCC
Q 001935 206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGR--LSPQNLT 278 (994)
Q Consensus 206 AVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~--~~~iwd~G~--~s~qslt 278 (994)
+++. ++.|++||+.+.+....+.....+. . . ....+++.+ ++|+.++. .+.+|+.-. .......
T Consensus 112 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~---~--~----~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 112 AVGSGSRVISICYFEQENDWWVCKHIKKPI---R--S----TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp EEEETTSSEEEEEEETTTTEEEEEEECTTC---C--S----CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred EEEeCCCEEEEEEecCCCcceeeeeeeccc---C--C----CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence 7765 5679999998876433222211100 0 0 124567766 67777653 467887311 0000000
Q ss_pred -CCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECC
Q 001935 279 -PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV 357 (994)
Q Consensus 279 -p~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~ 357 (994)
.+... . ..+..+ +.+..+. .....+.+++..+ .++.++.||.|+|||+.
T Consensus 183 ~~~~~~---~-~~~~~~----------------~~~~~~~------~~v~~~~~~~~~~----~l~~~~~d~~i~i~d~~ 232 (372)
T 1k8k_C 183 TPWGSK---M-PFGELM----------------FESSSSC------GWVHGVCFSANGS----RVAWVSHDSTVCLADAD 232 (372)
T ss_dssp BTTBSC---C-CTTCEE----------------EECCCCS------SCEEEEEECSSSS----EEEEEETTTEEEEEEGG
T ss_pred cccccc---c-chhhhe----------------EecCCCC------CeEEEEEECCCCC----EEEEEeCCCEEEEEECC
Confidence 00000 0 001111 1111100 0011122223222 24567789999999999
Q ss_pred CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCC--C---cccCCCCCC---------cccc---CCcce
Q 001935 358 TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP--S---CMRSGSGNH---------KYDW---NSSHV 420 (994)
Q Consensus 358 s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p--~---~~~~~sG~~---------~~~~---~~s~~ 420 (994)
+++.+..+..|..+|.+++|+|+|++|+++ .+|+ |+||++.. . ......... ...| .....
T Consensus 233 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (372)
T 1k8k_C 233 KKMAVATLASETLPLLAVTFITESSLVAAG-HDCF-PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS 310 (372)
T ss_dssp GTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSS-CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-
T ss_pred CCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCe-EEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccc
Confidence 999999999999999999999999999988 5565 99999864 1 000000000 0000 00001
Q ss_pred EE------EEEecccccccEEEEEEc-cCC---CEEEEEeCCCeEEEEecCC
Q 001935 421 HL------YKLHRGITSATIQDICFS-HYS---QWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 421 ~l------~~L~RG~t~a~I~sIaFS-pDg---~~LAsgS~dGTVhIw~I~~ 462 (994)
.. ..+..|+ ...|.+++|+ +|| ++|++++.||+|+||++..
T Consensus 311 ~~~~~~~~~~~~~~h-~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 311 SEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp --------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccCccccccccccc-cCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 11 3344454 4579999966 677 9999999999999999865
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.9e-20 Score=201.15 Aligned_cols=287 Identities=11% Similarity=0.082 Sum_probs=181.8
Q ss_pred CCcEEEEEEeeccCCCCCCCe-EEEEEecCc-EEEEEc----cCCCc------ceEeeee----------ccCCEEEEEE
Q 001935 56 KDQVTWAGFDRLEYGPSVFKQ-VLLLGYQNG-FQVLDV----EDASN------FNELVSK----------RDGPVSFLQM 113 (994)
Q Consensus 56 kd~V~wa~Fd~le~~~~~~~~-vL~lGy~~G-~qVWDv----~~~g~------v~ells~----------hdGpV~~v~~ 113 (994)
.+.|..+.|. ++++ +|++|..+| ++|||+ .. +. ....+.. |.++|.++++
T Consensus 45 ~~~v~~~~~s-------~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (425)
T 1r5m_A 45 LDNIVSSTWN-------PLDESILAYGEKNSVARLARIVETDQE-GKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW 116 (425)
T ss_dssp CSCCSEEEEC-------SSCTTEEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC------CBCEEEEEE
T ss_pred cCceEEEEEC-------CCCCcEEEEecCCceEEEEEEecccCC-ccccccccccccccccccccccccCCCCceEEEEE
Confidence 3556666665 3455 788887766 999999 54 43 2333333 6779999999
Q ss_pred ecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-C
Q 001935 114 QPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-R 192 (994)
Q Consensus 114 lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~ 192 (994)
.|++ .+|++.+. +++|++|| .+++.+..+.. .
T Consensus 117 s~~~-------------~~l~~~~~---------------------------------dg~i~i~~-~~~~~~~~~~~~~ 149 (425)
T 1r5m_A 117 SHDG-------------NSIVTGVE---------------------------------NGELRLWN-KTGALLNVLNFHR 149 (425)
T ss_dssp CTTS-------------SEEEEEET---------------------------------TSCEEEEE-TTSCEEEEECCCC
T ss_pred cCCC-------------CEEEEEeC---------------------------------CCeEEEEe-CCCCeeeeccCCC
Confidence 9865 36665321 35799999 77888888874 5
Q ss_pred CcEEEEEecC--CeEEEE-eCCeEEEEECCCCceeEEEeecCCccccCC--CccccccCccceEEcc-cEEEEcc--CCe
Q 001935 193 SSVCMVRCSP--RIVAVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQ--GAVGINVGYGPMAVGP-RWLAYAS--NTL 264 (994)
Q Consensus 193 S~V~sV~~S~--~iLAVg-l~~~I~IwDa~Tle~l~tL~t~p~p~~~~~--g~~~vnv~~gplAlgp-RwLAyas--~~~ 264 (994)
..|.++++++ +.|+++ .++.|++||+.+.+.+..+..+..+..... ...........+++.+ ..++.++ ..+
T Consensus 150 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 229 (425)
T 1r5m_A 150 APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAI 229 (425)
T ss_dssp SCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCE
T ss_pred ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeE
Confidence 6899999987 456654 467899999999988877765432100000 0000000012244444 2333332 235
Q ss_pred eeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccc
Q 001935 265 LLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGAD 344 (994)
Q Consensus 265 ~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as 344 (994)
.+|+.... ..+ ..+..+. .....+.+++..+ .++.
T Consensus 230 ~~~d~~~~-------------------~~~----------------~~~~~~~------~~i~~~~~~~~~~----~l~~ 264 (425)
T 1r5m_A 230 FVYQITEK-------------------TPT----------------GKLIGHH------GPISVLEFNDTNK----LLLS 264 (425)
T ss_dssp EEEETTCS-------------------SCS----------------EEECCCS------SCEEEEEEETTTT----EEEE
T ss_pred EEEEcCCC-------------------cee----------------eeeccCC------CceEEEEECCCCC----EEEE
Confidence 56653110 000 0000000 0000111112222 2346
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 001935 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~ 424 (994)
++.+|.|+|||+.+++.+..+.+|..+|.+++|+|+| +|++++.+|. |+||++.. + ..+..
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-i~i~d~~~-------~----------~~~~~ 325 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGS-VRLWSLKQ-------N----------TLLAL 325 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSE-EEEEETTT-------T----------EEEEE
T ss_pred EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCc-EEEEECCC-------C----------cEeEe
Confidence 6789999999999999999999999999999999999 9999999665 99999853 2 45555
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 425 L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
+. + +...|.+++|+||+++|++++.||+|+||++...
T Consensus 326 ~~-~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 326 SI-V-DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp EE-C-TTCCEEEEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred cc-c-CCccEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 54 3 3457999999999999999999999999998753
No 49
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.88 E-value=2.4e-21 Score=213.75 Aligned_cols=262 Identities=16% Similarity=0.167 Sum_probs=170.8
Q ss_pred EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCC
Q 001935 86 FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQS 165 (994)
Q Consensus 86 ~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~ 165 (994)
..+|+.. ...+..++.+|.++|.++++.|++ .+|+..+
T Consensus 48 ~~~~~~~-~~~~~~~l~gH~~~V~~~~~sp~~-------------~~l~s~s---------------------------- 85 (380)
T 3iz6_a 48 AVSFNPT-DLVCCRTLQGHSGKVYSLDWTPEK-------------NWIVSAS---------------------------- 85 (380)
T ss_dssp CCCCCCC-CCEEEEEECCCSSCEEEEEECTTS-------------SCEEEEE----------------------------
T ss_pred ccccccc-eeEEeecccccccEEEEEEEcCCC-------------CEEEEEe----------------------------
Confidence 3456653 345667889999999999999865 3566422
Q ss_pred CCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCce-------eEEEeecCCcc
Q 001935 166 GNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLEN-------KFSVLTYPVPQ 234 (994)
Q Consensus 166 ~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~-------l~tL~t~p~p~ 234 (994)
.+++|+|||+.+++.+++++.+ ..|.++++++ ++|+++. ++.|++||+.+... ...+..|...
T Consensus 86 -----~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~- 159 (380)
T 3iz6_a 86 -----QDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY- 159 (380)
T ss_dssp -----TTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSC-
T ss_pred -----CCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcc-
Confidence 1479999999999999999866 5799999988 5677644 66899999875321 1222222211
Q ss_pred ccCCCccccccCccceEEcc---cEEEEcc--CCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhccc
Q 001935 235 LAGQGAVGINVGYGPMAVGP---RWLAYAS--NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGL 309 (994)
Q Consensus 235 ~~~~g~~~vnv~~gplAlgp---RwLAyas--~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi 309 (994)
...+++.+ ..|+.++ ..+.+|+... +..+..+.. ....|
T Consensus 160 ------------v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~-------------------~~~~~~~~~----~~~~~- 203 (380)
T 3iz6_a 160 ------------ASSCQYVPDQETRLITGSGDQTCVLWDVTT-------------------GQRISIFGS----EFPSG- 203 (380)
T ss_dssp ------------CCCCBCCSSSSSCEEEECTTSCEEEECTTT-------------------CCEEEEECC----CSSSS-
T ss_pred ------------eEEEEEecCCCCEEEEECCCCcEEEEEcCC-------------------CcEEEEeec----ccCCC-
Confidence 12233333 3455444 2567887411 000000000 00000
Q ss_pred ceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCEEEEEE
Q 001935 310 SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTLLVTAS 388 (994)
Q Consensus 310 ~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~-s~~~i~~~~aHtspIsaLaFSPdGtlLATAS 388 (994)
+... ...+.+++ .....+++++.||.|+|||+. ..+.+..+.+|..+|.+|+|+|+|++|||+|
T Consensus 204 ------h~~~------v~~~~~~~---~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 268 (380)
T 3iz6_a 204 ------HTAD------VLSLSINS---LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS 268 (380)
T ss_dssp ------CCSC------EEEEEECS---SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC
T ss_pred ------CccC------eEEEEeec---CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc
Confidence 0000 00001111 001134578899999999997 4577889999999999999999999999999
Q ss_pred cCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc-----cccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 389 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT-----SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 389 ~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t-----~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
.||+ |+|||+.. | ..+..+..... ...|.+++|+|||++|++|+.||+|+||++...
T Consensus 269 ~D~~-i~lwd~~~-------~----------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~ 330 (380)
T 3iz6_a 269 DDGT-CRLFDMRT-------G----------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA 330 (380)
T ss_dssp SSSC-EEEEETTT-------T----------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred CCCe-EEEEECCC-------C----------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence 9776 99999864 3 34555433211 124899999999999999999999999998654
Q ss_pred C
Q 001935 464 G 464 (994)
Q Consensus 464 g 464 (994)
.
T Consensus 331 ~ 331 (380)
T 3iz6_a 331 E 331 (380)
T ss_dssp C
T ss_pred c
Confidence 3
No 50
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.87 E-value=7.7e-20 Score=204.15 Aligned_cols=285 Identities=15% Similarity=0.135 Sum_probs=183.8
Q ss_pred CCCCCCc-EEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 52 SEDLKDQ-VTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 52 ~~~~kd~-V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
..+|.+. +.++.|+ +.+|++|..+| ++|||+. .++....+..|.++|.++++.|+.
T Consensus 117 l~~h~~~v~~~~~~~---------~~~l~sgs~dg~i~vwd~~-~~~~~~~~~~h~~~V~~l~~~~~~------------ 174 (464)
T 3v7d_B 117 LRGHMTSVITCLQFE---------DNYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGVWALKYAHGG------------ 174 (464)
T ss_dssp EECCSSSCEEEEEEE---------TTEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECSTT------------
T ss_pred EcCCCCCcEEEEEEC---------CCEEEEEcCCCcEEEEECC-CCcEEEEEeCCCcCEEEEEEcCCC------------
Confidence 3567666 4666775 23677776665 9999995 577778888999999999998643
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-CCCcEEEEEecC----Ce
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR-FRSSVCMVRCSP----RI 204 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~-f~S~V~sV~~S~----~i 204 (994)
+|++.+ .+++|++||+++++++.++. +...|.++++++ ++
T Consensus 175 --~l~s~s---------------------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 219 (464)
T 3v7d_B 175 --ILVSGS---------------------------------TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKY 219 (464)
T ss_dssp --EEEEEE---------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEE
T ss_pred --EEEEEe---------------------------------CCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCE
Confidence 455422 13689999999999999997 457999998873 45
Q ss_pred EEEEe-CCeEEEEECCCCceeEEEeecC-Ccccc--------CCCccccccCccceEEc--ccEEEEccC--CeeeccCC
Q 001935 205 VAVGL-ATQIYCFDALTLENKFSVLTYP-VPQLA--------GQGAVGINVGYGPMAVG--PRWLAYASN--TLLLSNSG 270 (994)
Q Consensus 205 LAVgl-~~~I~IwDa~Tle~l~tL~t~p-~p~~~--------~~g~~~vnv~~gplAlg--pRwLAyas~--~~~iwd~G 270 (994)
|+++. ++.|++||+.+.+......... .+... ........ .....++. .++|+.++. .+.+|+..
T Consensus 220 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~~~~~d~~i~vwd~~ 298 (464)
T 3v7d_B 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH-MASVRTVSGHGNIVVSGSYDNTLIVWDVA 298 (464)
T ss_dssp EEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC-SSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc-cceEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 66554 6689999999876443221100 00000 00000000 00112232 356665543 45677631
Q ss_pred ccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCe
Q 001935 271 RLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGI 350 (994)
Q Consensus 271 ~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~ 350 (994)
. +..+ .++..+.. ....+.+++..+ .+++++.||.
T Consensus 299 ~-------------------~~~~----------------~~~~~~~~------~v~~~~~~~~~~----~l~sg~~dg~ 333 (464)
T 3v7d_B 299 Q-------------------MKCL----------------YILSGHTD------RIYSTIYDHERK----RCISASMDTT 333 (464)
T ss_dssp T-------------------TEEE----------------EEECCCSS------CEEEEEEETTTT----EEEEEETTSC
T ss_pred C-------------------CcEE----------------EEecCCCC------CEEEEEEcCCCC----EEEEEeCCCc
Confidence 1 0000 01100000 000111112221 2456789999
Q ss_pred EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 001935 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT 430 (994)
Q Consensus 351 V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t 430 (994)
|+|||+.+++.+..+.+|..+|.+++|+ +.+|++++.+|+ |+|||+.. + ...+.+. +
T Consensus 334 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~~-------~----------~~~~~~~---~ 390 (464)
T 3v7d_B 334 IRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDAND-------Y----------SRKFSYH---H 390 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTT-------C----------CEEEEEE---C
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECCC-------C----------ceeeeec---C
Confidence 9999999999999999999999999998 689999999765 99999853 2 2444443 3
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 431 SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 431 ~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
...+..++|++|+++|++++ ||+|+||++...
T Consensus 391 ~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 391 TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred CCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 34577899999999999999 899999999764
No 51
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.87 E-value=2.4e-20 Score=200.92 Aligned_cols=247 Identities=16% Similarity=0.182 Sum_probs=170.7
Q ss_pred ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEE
Q 001935 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (994)
Q Consensus 97 v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVr 176 (994)
++..|.+|.++|..+++.|+. ..+|+..+ .+++|+
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~------------~~~l~s~s---------------------------------~D~~v~ 43 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQ------------PNLLLSAS---------------------------------RDKTLI 43 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSC------------TTEEEEEE---------------------------------TTSEEE
T ss_pred EEEEEccccceEEEEEccCCC------------ccEEEEec---------------------------------CCccEE
Confidence 345678899999999998743 12556422 147999
Q ss_pred EEECCC-----CeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCc
Q 001935 177 FYSFQS-----HCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (994)
Q Consensus 177 LWDlkt-----ge~V~tL~f~-S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~ 247 (994)
+||+.+ +..+.+++.+ ..|.++++++ ++|+++. ++.|++||+.+.+.+.++..|..+ .
T Consensus 44 ~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~-------------v 110 (319)
T 3frx_A 44 SWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD-------------V 110 (319)
T ss_dssp EEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-------------E
T ss_pred EecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc-------------E
Confidence 999864 3456777654 5899999987 4666655 678999999999998888877552 2
Q ss_pred cceEEcc--cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCC
Q 001935 248 GPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPD 323 (994)
Q Consensus 248 gplAlgp--RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~ 323 (994)
..+++.+ ++|+.++. .+.+|+........+. +....+.. -.+.|.
T Consensus 111 ~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~-----------------------------~h~~~v~~--~~~~~~ 159 (319)
T 3frx_A 111 MSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL-----------------------------GHNDWVSQ--VRVVPN 159 (319)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEETTSCEEEEEC-----------------------------CCSSCEEE--EEECCC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe-----------------------------ccCCcEEE--EEEccC
Confidence 3466666 56776653 5678874110000000 00000000 000111
Q ss_pred CCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCc
Q 001935 324 GSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 403 (994)
Q Consensus 324 ~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~ 403 (994)
.. .......+++++.||.|++||+.+.+....+.+|..+|.+|+|+|+|++|||++.||+ |+|||+..
T Consensus 160 ~~---------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~-- 227 (319)
T 3frx_A 160 EK---------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAA-- 227 (319)
T ss_dssp ---------------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTT--
T ss_pred CC---------CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCC--
Confidence 00 0001113457789999999999999999999999999999999999999999999765 99999863
Q ss_pred ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 404 ~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
+ +.++++.. ...|.+++|+||+++|++++.+ .++||++++.
T Consensus 228 -----~----------~~~~~~~~---~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~ 268 (319)
T 3frx_A 228 -----K----------KAMYTLSA---QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ 268 (319)
T ss_dssp -----T----------EEEEEEEC---CSCEEEEEECSSSSEEEEEETT-EEEEEEETTE
T ss_pred -----C----------cEEEEecC---CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC
Confidence 2 46666642 2469999999999999998865 5999998764
No 52
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.87 E-value=4.2e-20 Score=204.70 Aligned_cols=257 Identities=14% Similarity=0.083 Sum_probs=172.3
Q ss_pred eccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCC
Q 001935 103 KRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS 182 (994)
Q Consensus 103 ~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlkt 182 (994)
.|.+.|.+++|.|++ .+||+ ++ +++++||++.+
T Consensus 62 ~h~~~V~~v~fspdg-------------~~la~-g~---------------------------------~~~v~i~~~~~ 94 (393)
T 1erj_A 62 DHTSVVCCVKFSNDG-------------EYLAT-GC---------------------------------NKTTQVYRVSD 94 (393)
T ss_dssp ECSSCCCEEEECTTS-------------SEEEE-EC---------------------------------BSCEEEEETTT
T ss_pred CCCCEEEEEEECCCC-------------CEEEE-Ec---------------------------------CCcEEEEEecC
Confidence 488999999999876 36664 21 14699999999
Q ss_pred CeEEEEEeCCC-------------------cEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCc
Q 001935 183 HCYEHVLRFRS-------------------SVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGA 240 (994)
Q Consensus 183 ge~V~tL~f~S-------------------~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~ 240 (994)
++.+..+..+. .|.+++|++ ++|+++. ++.|++||+.+.+.+..+..|..+
T Consensus 95 g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~------- 167 (393)
T 1erj_A 95 GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD------- 167 (393)
T ss_dssp CCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------
T ss_pred CCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCC-------
Confidence 99998885432 389999987 5777765 567999999999888888776542
Q ss_pred cccccCccceEEcc--cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccc
Q 001935 241 VGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKY 316 (994)
Q Consensus 241 ~~vnv~~gplAlgp--RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y 316 (994)
...+++.+ ++|+.++. .+.+|+... +.....+.. ..++
T Consensus 168 ------v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-------------------~~~~~~~~~------~~~v------- 209 (393)
T 1erj_A 168 ------IYSLDYFPSGDKLVSGSGDRTVRIWDLRT-------------------GQCSLTLSI------EDGV------- 209 (393)
T ss_dssp ------EEEEEECTTSSEEEEEETTSEEEEEETTT-------------------TEEEEEEEC------SSCE-------
T ss_pred ------EEEEEEcCCCCEEEEecCCCcEEEEECCC-------------------CeeEEEEEc------CCCc-------
Confidence 23567766 67776654 467887311 011000000 0000
Q ss_pred cccccCCCCCCCccCCC-ccccccccccccCCCCeEEEEECCCCcEEEEe-------ccCCCCeEEEEECCCCCEEEEEE
Q 001935 317 CQELLPDGSSSPVSPNS-VWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-------KAHTSPISALCFDPSGTLLVTAS 388 (994)
Q Consensus 317 ~~~l~p~~s~s~~s~s~-~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~-------~aHtspIsaLaFSPdGtlLATAS 388 (994)
....+++ +++ .+++++.||.|+|||+.++..+..+ .+|..+|.+|+|+|+|++||+++
T Consensus 210 ----------~~~~~~~~~~~----~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 275 (393)
T 1erj_A 210 ----------TTVAVSPGDGK----YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275 (393)
T ss_dssp ----------EEEEECSTTCC----EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred ----------EEEEEECCCCC----EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence 0011111 111 2456789999999999999888777 68999999999999999999999
Q ss_pred cCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcc
Q 001935 389 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 468 (994)
Q Consensus 389 ~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~ 468 (994)
.+|+ |+|||+....... .........+...+ .|+ ...|.+++|+||+++|++++.||+|+||++........
T Consensus 276 ~d~~-v~~wd~~~~~~~~-----~~~~~~~~~~~~~~-~~h-~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~ 347 (393)
T 1erj_A 276 LDRS-VKLWNLQNANNKS-----DSKTPNSGTCEVTY-IGH-KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 347 (393)
T ss_dssp TTSE-EEEEEC--------------------CEEEEE-ECC-SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCE-EEEEECCCCCCcc-----cccCCCCCcceEEE-ecc-cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 9665 9999986320000 00000011244444 343 45799999999999999999999999999877554445
Q ss_pred ccccc
Q 001935 469 FQTLS 473 (994)
Q Consensus 469 ~~~H~ 473 (994)
+..|.
T Consensus 348 l~~h~ 352 (393)
T 1erj_A 348 LQGHR 352 (393)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 56664
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.86 E-value=1.9e-19 Score=201.07 Aligned_cols=273 Identities=15% Similarity=0.144 Sum_probs=193.0
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
.+|.+.|..+.|+ +.+|++|..+| ++|||+. .++....+..|.++|.++.+.+ .
T Consensus 156 ~~h~~~v~~~~~~---------~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~---------------~ 210 (445)
T 2ovr_B 156 VGHTGGVWSSQMR---------DNIIISGSTDRTLKVWNAE-TGECIHTLYGHTSTVRCMHLHE---------------K 210 (445)
T ss_dssp CCCSSCEEEEEEE---------TTEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEEET---------------T
T ss_pred cCCCCCEEEEEec---------CCEEEEEeCCCeEEEEECC-cCcEEEEECCCCCcEEEEEecC---------------C
Confidence 4567777777775 23566666555 8999985 4667777788888999888752 2
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEe-
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL- 209 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~~iLAVgl- 209 (994)
+|++.+ .+++|++||+.+++.+..+..+ ..|.++.++.+.|+++.
T Consensus 211 ~l~s~s---------------------------------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 257 (445)
T 2ovr_B 211 RVVSGS---------------------------------RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY 257 (445)
T ss_dssp EEEEEE---------------------------------TTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET
T ss_pred EEEEEe---------------------------------CCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcC
Confidence 445422 1378999999999999998754 68999999888887766
Q ss_pred CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccC--CeeeccCCccCCCcCCCCCCCCCcC
Q 001935 210 ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTS 287 (994)
Q Consensus 210 ~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~--~~~iwd~G~~s~qsltp~~~S~stS 287 (994)
++.|++||+.+.+.+.++..+..+ ...+++..++|+.++. .+.+|+...
T Consensus 258 dg~i~iwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~~~~~d~~i~i~d~~~---------------- 308 (445)
T 2ovr_B 258 DFMVKVWDPETETCLHTLQGHTNR-------------VYSLQFDGIHVVSGSLDTSIRVWDVET---------------- 308 (445)
T ss_dssp TSCEEEEEGGGTEEEEEECCCSSC-------------EEEEEECSSEEEEEETTSCEEEEETTT----------------
T ss_pred CCEEEEEECCCCcEeEEecCCCCc-------------eEEEEECCCEEEEEeCCCeEEEEECCC----------------
Confidence 557999999999888888765442 2345566677776653 466776311
Q ss_pred CCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 001935 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (994)
Q Consensus 288 p~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a 367 (994)
+..+. ++..+.. ....+.. ... .++.++.||.|+|||+.+++.+..+..
T Consensus 309 ---~~~~~----------------~~~~~~~------~v~~~~~--~~~----~l~~~~~dg~i~vwd~~~~~~~~~~~~ 357 (445)
T 2ovr_B 309 ---GNCIH----------------TLTGHQS------LTSGMEL--KDN----ILVSGNADSTVKIWDIKTGQCLQTLQG 357 (445)
T ss_dssp ---CCEEE----------------EECCCCS------CEEEEEE--ETT----EEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred ---CCEEE----------------EEcCCcc------cEEEEEE--eCC----EEEEEeCCCeEEEEECCCCcEEEEEcc
Confidence 01110 0100000 0000000 001 235677899999999999999999987
Q ss_pred ---CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE---ecccccccEEEEEEcc
Q 001935 368 ---HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL---HRGITSATIQDICFSH 441 (994)
Q Consensus 368 ---HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L---~RG~t~a~I~sIaFSp 441 (994)
|..+|.+++|+ +.+||+++.+|+ |+||++.. | ..+..+ ..+.+...|++++|+|
T Consensus 358 ~~~~~~~v~~~~~~--~~~l~s~~~dg~-v~iwd~~~-------~----------~~~~~~~~~~~~~~~~~v~~~~~s~ 417 (445)
T 2ovr_B 358 PNKHQSAVTCLQFN--KNFVITSSDDGT-VKLWDLKT-------G----------EFIRNLVTLESGGSGGVVWRIRASN 417 (445)
T ss_dssp TTSCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTT-------C----------CEEEEEEECTTGGGTCEEEEEEECS
T ss_pred CCCCCCCEEEEEEC--CCEEEEEeCCCe-EEEEECCC-------C----------ceeeeeeccccCCCCceEEEEEecC
Confidence 89999999996 689999999765 99999864 3 345554 2234556899999999
Q ss_pred CCCEEEEEeCCCe----EEEEecCCC
Q 001935 442 YSQWIAIVSSKGT----CHVFVLSPF 463 (994)
Q Consensus 442 Dg~~LAsgS~dGT----VhIw~I~~~ 463 (994)
|+.+||+++.||+ ++||++...
T Consensus 418 ~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 418 TKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CEEEEEEcccCCCCccEEEEEECCCC
Confidence 9999999999998 999998764
No 54
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.86 E-value=1.1e-19 Score=207.86 Aligned_cols=312 Identities=11% Similarity=0.053 Sum_probs=195.3
Q ss_pred CCCC---cEEEEEEeeccCCCCCC-CeEEEEEecCc-EEEEEccCCCcceEee-e---eccCCEEEEEEecCCCCCCCCC
Q 001935 54 DLKD---QVTWAGFDRLEYGPSVF-KQVLLLGYQNG-FQVLDVEDASNFNELV-S---KRDGPVSFLQMQPFPVKDDGCE 124 (994)
Q Consensus 54 ~~kd---~V~wa~Fd~le~~~~~~-~~vL~lGy~~G-~qVWDv~~~g~v~ell-s---~hdGpV~~v~~lP~p~~s~~~D 124 (994)
.|.+ .|..+.|.. + ++.|++|..+| ++|||+. .++....+ . .|.++|..+.+. ++
T Consensus 201 ~~~~~~~~v~~~~~~~-------~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~v~~~~~~-~~------- 264 (615)
T 1pgu_A 201 THHKQGSFVRDVEFSP-------DSGEFVITVGSDRKISCFDGK-SGEFLKYIEDDQEPVQGGIFALSWL-DS------- 264 (615)
T ss_dssp SSSCTTCCEEEEEECS-------TTCCEEEEEETTCCEEEEETT-TCCEEEECCBTTBCCCSCEEEEEES-SS-------
T ss_pred ccCCCCceEEEEEECC-------CCCCEEEEEeCCCeEEEEECC-CCCEeEEecccccccCCceEEEEEc-CC-------
Confidence 4555 677777763 4 56777777655 9999995 46666666 5 788999999987 43
Q ss_pred CccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-----CcEEEEE
Q 001935 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-----SSVCMVR 199 (994)
Q Consensus 125 ~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-----S~V~sV~ 199 (994)
.+|++.+ .+++|++||+++++++..+..+ ..+.++.
T Consensus 265 ------~~l~~~~---------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (615)
T 1pgu_A 265 ------QKFATVG---------------------------------ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV 305 (615)
T ss_dssp ------SEEEEEE---------------------------------TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE
T ss_pred ------CEEEEEc---------------------------------CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEE
Confidence 3556432 1368999999999999999876 5677777
Q ss_pred e-cCCeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEcc--CCeeeccCCccCCC
Q 001935 200 C-SPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYAS--NTLLLSNSGRLSPQ 275 (994)
Q Consensus 200 ~-S~~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas--~~~~iwd~G~~s~q 275 (994)
+ +.+.|+++. ++.|++||+.+.+.+..+..|..+ ...+++ +. |+.++ ..+.+|+...+. .
T Consensus 306 ~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------------v~~~~~-~~-l~~~~~dg~i~~w~~~~~~-~ 369 (615)
T 1pgu_A 306 ATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKG-------------ITALTV-NP-LISGSYDGRIMEWSSSSMH-Q 369 (615)
T ss_dssp EEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSC-------------EEEEET-TT-TEEEETTSCEEETTTTEEE-C
T ss_pred eCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCC-------------EEEEEe-cC-cEEECCCCeEEEEEchhhc-C
Confidence 7 445666654 568999999988877777665442 123444 44 33332 234556532111 1
Q ss_pred cCCCCCCCCCcCCCCCceEEEeehhhh---hhhhccc---------------------ceeecccc-------ccccCCC
Q 001935 276 NLTPSGVSPSTSPGGSSLVARYAMEHS---KQFAAGL---------------------SKTLSKYC-------QELLPDG 324 (994)
Q Consensus 276 sltp~~~S~stSp~~gsLVa~~A~dss---k~la~Gi---------------------~ktlS~y~-------~~l~p~~ 324 (994)
....++..+.+ +.+..+++- ..+.. +++..+. .+.+.-|- ..+....
T Consensus 370 ~~~~~v~~~~~-~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (615)
T 1pgu_A 370 DHSNLIVSLDN-SKAQEYSSI-SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS 447 (615)
T ss_dssp CCCSCEEEEEC-CSTTCCEEE-ETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred cccCceEEEEE-CCCcEEEEE-eCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCC
Confidence 11112222222 112222210 00000 0000000 00000000 0000000
Q ss_pred CCCCccCCCccccccccccccCC-CCeEEEEECCCCcEE-EEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCC
Q 001935 325 SSSPVSPNSVWKVGRHAGADMDN-AGIVVVKDFVTRAII-SQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 402 (994)
Q Consensus 325 s~s~~s~s~~~k~g~~~~as~s~-dG~V~VwDl~s~~~i-~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~ 402 (994)
....+.++ . -.++.+.. +|.|++||+.+++.. ..+.+|..+|.+|+|+|+|++||+++.+|. |+||++..
T Consensus 448 ~~~~~~~~--~----~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~iw~~~~- 519 (615)
T 1pgu_A 448 PGSAVSLS--Q----NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQS- 519 (615)
T ss_dssp CEEEEEEC--S----SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-
T ss_pred CceEEEEc--C----CEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe-EEEeeCCC-
Confidence 00001111 1 12345667 999999999988766 788899999999999999999999999776 99999964
Q ss_pred cccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc----------CCCEEEEEeCCCeEEEEecCCC
Q 001935 403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH----------YSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 403 ~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSp----------Dg~~LAsgS~dGTVhIw~I~~~ 463 (994)
+ ..+.++ .+.+...|.+++|+| |+++||+++.||+|+||++...
T Consensus 520 ------~----------~~~~~~-~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 520 ------R----------EVKTSR-WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp ------T----------EEEECC-SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred ------C----------cceeEe-ecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 2 355554 343457899999999 9999999999999999999875
No 55
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.86 E-value=1.7e-19 Score=191.23 Aligned_cols=216 Identities=14% Similarity=0.145 Sum_probs=164.1
Q ss_pred cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEE
Q 001935 96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV 175 (994)
Q Consensus 96 ~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tV 175 (994)
.+...+.+|.++|.++++.|++ .+||..+. +++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~-------------~~l~s~~~---------------------------------dg~i 47 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNG-------------EWLASSSA---------------------------------DKLI 47 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTS-------------SEEEEEET---------------------------------TSCE
T ss_pred eeEEEEcccCCcEEEEEECCCC-------------CEEEEeeC---------------------------------CCeE
Confidence 3456677899999999999865 36665321 3679
Q ss_pred EEEECCCCeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceE
Q 001935 176 RFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMA 251 (994)
Q Consensus 176 rLWDlktge~V~tL~f~-S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplA 251 (994)
++||+.+++.+..+..+ ..|.++++++ ++|+++. ++.|++||+.+.+.+.++..|..+ .
T Consensus 48 ~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------v---- 110 (312)
T 4ery_A 48 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-------------V---- 110 (312)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------E----
T ss_pred EEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCC-------------E----
Confidence 99999999999988654 6899999987 5677655 568999999999888877655431 0
Q ss_pred EcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccC
Q 001935 252 VGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSP 331 (994)
Q Consensus 252 lgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~ 331 (994)
..++|.. ++.
T Consensus 111 ---~~~~~~~---------------------------~~~---------------------------------------- 120 (312)
T 4ery_A 111 ---FCCNFNP---------------------------QSN---------------------------------------- 120 (312)
T ss_dssp ---EEEEECS---------------------------SSS----------------------------------------
T ss_pred ---EEEEEcC---------------------------CCC----------------------------------------
Confidence 1122221 101
Q ss_pred CCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCC
Q 001935 332 NSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411 (994)
Q Consensus 332 s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~ 411 (994)
.+++++.||.|+|||+.+++.+..+..|..+|.+++|+|+|++|++++.+|+ |+|||+.. +
T Consensus 121 ---------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~wd~~~-------~-- 181 (312)
T 4ery_A 121 ---------LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTAS-------G-- 181 (312)
T ss_dssp ---------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTT-------C--
T ss_pred ---------EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc-EEEEECCC-------C--
Confidence 1124567999999999999999999999999999999999999999999776 99999853 2
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcccccc
Q 001935 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (994)
Q Consensus 412 ~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H 472 (994)
..+..+... +...|..++|+||+++|++++.||+|+||++........+..|
T Consensus 182 --------~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 233 (312)
T 4ery_A 182 --------QCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233 (312)
T ss_dssp --------CEEEEECCS-SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSS
T ss_pred --------ceeeEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEec
Confidence 355555433 3457999999999999999999999999999765433333333
No 56
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.9e-20 Score=207.36 Aligned_cols=253 Identities=13% Similarity=0.177 Sum_probs=175.0
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC---CCcceEeee-eccCCEEEEEEecCCCCCCCCCCcc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED---ASNFNELVS-KRDGPVSFLQMQPFPVKDDGCEGFR 127 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~---~g~v~ells-~hdGpV~~v~~lP~p~~s~~~D~F~ 127 (994)
++|.+.|..+.|.. .++++|++|..+| ++|||+.. .......+. .|.++|.++++.|++
T Consensus 60 ~~h~~~V~~~~~s~------~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------- 123 (437)
T 3gre_A 60 ENEPNSITSSAVSP------GETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF---------- 123 (437)
T ss_dssp TTTTSCEEEEEEEC------SSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS----------
T ss_pred cCCCCceEEEEECC------CCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC----------
Confidence 67889999999972 1456788887766 89999954 211221222 588999999999764
Q ss_pred ccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECC---CCeEEEEEeC-------------
Q 001935 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQ---SHCYEHVLRF------------- 191 (994)
Q Consensus 128 ~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlk---tge~V~tL~f------------- 191 (994)
.+|++.+ .+++|++||+. +++.+..+..
T Consensus 124 ---~~l~s~s---------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 167 (437)
T 3gre_A 124 ---DAFAVSS---------------------------------KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGK 167 (437)
T ss_dssp ---SEEEEEE---------------------------------TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSS
T ss_pred ---CEEEEEe---------------------------------CCCEEEEEEeccccCCceeeccccceeEEEEccCccc
Confidence 3566532 13689999994 6666554432
Q ss_pred CCcEEEEEe--c--CCeEEEEe-CCeEEEEECCCCceeEEEeec--CCccccCCCccccccCccceEEcccEEEEccCCe
Q 001935 192 RSSVCMVRC--S--PRIVAVGL-ATQIYCFDALTLENKFSVLTY--PVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTL 264 (994)
Q Consensus 192 ~S~V~sV~~--S--~~iLAVgl-~~~I~IwDa~Tle~l~tL~t~--p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~ 264 (994)
...+.++.+ + .++|+++. ++.|++||+.+.+.+.++..+ ..+ . ..|+|..
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~-------------v-------~~~~~s~--- 224 (437)
T 3gre_A 168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA-------------V-------SSICIDE--- 224 (437)
T ss_dssp CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCC-------------E-------EEEEECT---
T ss_pred ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCc-------------e-------EEEEECC---
Confidence 234555542 2 34666655 568999999999988887752 221 0 1122221
Q ss_pred eeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccc
Q 001935 265 LLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGAD 344 (994)
Q Consensus 265 ~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as 344 (994)
++.. +++
T Consensus 225 ------------------------~~~~-------------------------------------------------l~s 231 (437)
T 3gre_A 225 ------------------------ECCV-------------------------------------------------LIL 231 (437)
T ss_dssp ------------------------TSCE-------------------------------------------------EEE
T ss_pred ------------------------CCCE-------------------------------------------------EEE
Confidence 1111 124
Q ss_pred cCCCCeEEEEECCCCcEEEEec-cCCCCeEEE----EECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcc
Q 001935 345 MDNAGIVVVKDFVTRAIISQFK-AHTSPISAL----CFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~-aHtspIsaL----aFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~ 419 (994)
++.||.|+|||+.+++.+..+. .|..+|.+| +|+|+|.+||+++.+|+ |+|||+.. +
T Consensus 232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd~~~-------~---------- 293 (437)
T 3gre_A 232 GTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIWNFVK-------G---------- 293 (437)
T ss_dssp EETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEEETTT-------T----------
T ss_pred EcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EEEEEcCC-------C----------
Confidence 5678999999999999999887 888999999 55567999999999664 99999863 2
Q ss_pred eEEEEEec-----------------------c-cccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcccccc
Q 001935 420 VHLYKLHR-----------------------G-ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (994)
Q Consensus 420 ~~l~~L~R-----------------------G-~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H 472 (994)
..+..+.. | .+...|++++|+ ++++|++++.||+|+||++........+..|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 294 HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISP 369 (437)
T ss_dssp EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecc
Confidence 34444431 1 134569999999 8899999999999999999876555555555
No 57
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.86 E-value=1.2e-19 Score=197.48 Aligned_cols=262 Identities=18% Similarity=0.175 Sum_probs=171.6
Q ss_pred ceEeeeeccC-CEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEE
Q 001935 97 FNELVSKRDG-PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV 175 (994)
Q Consensus 97 v~ells~hdG-pV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tV 175 (994)
+...+..|.+ +|..+++.|++ .+||..+. +++|
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g-------------~~las~~~---------------------------------D~~i 40 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAG-------------TLLASCGG---------------------------------DRRI 40 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTS-------------SCEEEEET---------------------------------TSCE
T ss_pred EeeeecCCCCCcEEEEEECCCC-------------CEEEEEcC---------------------------------CCeE
Confidence 3445566765 99999999876 35665321 3689
Q ss_pred EEEECCCCeEEEEE---e-CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCc--eeEEEeecCCccccCCCccccccC
Q 001935 176 RFYSFQSHCYEHVL---R-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVG 246 (994)
Q Consensus 176 rLWDlktge~V~tL---~-f~S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle--~l~tL~t~p~p~~~~~g~~~vnv~ 246 (994)
+|||+.+++.+... . +...|.+|+|++ ++|+++. ++.|+|||+.+.+ .+.++..|..+
T Consensus 41 ~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~------------- 107 (345)
T 3fm0_A 41 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE------------- 107 (345)
T ss_dssp EEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSC-------------
T ss_pred EEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCC-------------
Confidence 99999998755432 2 446899999998 5777755 6689999987653 45566655442
Q ss_pred ccceEEcc--cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccC
Q 001935 247 YGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 322 (994)
Q Consensus 247 ~gplAlgp--RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p 322 (994)
...++++| ++||.++. .+.+|+..... . ...+ ..+..+...
T Consensus 108 v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~--~--------------~~~~----------------~~~~~h~~~--- 152 (345)
T 3fm0_A 108 VKSVAWAPSGNLLATCSRDKSVWVWEVDEED--E--------------YECV----------------SVLNSHTQD--- 152 (345)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEECTTS--C--------------EEEE----------------EEECCCCSC---
T ss_pred ceEEEEeCCCCEEEEEECCCeEEEEECCCCC--C--------------eEEE----------------EEecCcCCC---
Confidence 24577776 78887764 56788731100 0 0000 011111000
Q ss_pred CCCCCCccCCCccccccccccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCC
Q 001935 323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 323 ~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~--~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (994)
...+.+++..+ .+++++.||.|+|||+.+++ .+..+.+|..+|.+|+|+|+|++||+++.||+ |+||++.
T Consensus 153 ---v~~~~~~p~~~----~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~ 224 (345)
T 3fm0_A 153 ---VKHVVWHPSQE----LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQY 224 (345)
T ss_dssp ---EEEEEECSSSS----CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEE
T ss_pred ---eEEEEECCCCC----EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccc
Confidence 01112223222 34577899999999998875 45789999999999999999999999999776 9999963
Q ss_pred CCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 401 p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
... ...+...........++..+ .|.+...|++++|+|++..||+++.|++|+||++.+.
T Consensus 225 ~~~--~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 225 LPG--NEQGVACSGSDPSWKCICTL-SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp CTT--CTTCCCCC---CEEEEEEEE-CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred cCC--CCccceeeccCCccceeEEe-cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 210 00000000001122445555 3556678999999999999999999999999998764
No 58
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.86 E-value=3.4e-19 Score=223.51 Aligned_cols=289 Identities=15% Similarity=0.096 Sum_probs=204.3
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
.+|.+.|..+.|.. +++.|++|..+| ++|||+. ++.....+..|.++|.++++.|++ .
T Consensus 612 ~~h~~~v~~~~~s~-------~~~~l~s~~~d~~i~vw~~~-~~~~~~~~~~h~~~v~~~~~s~~~-------------~ 670 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQ-------DGQRIASCGADKTLQVFKAE-TGEKLLDIKAHEDEVLCCAFSSDD-------------S 670 (1249)
T ss_dssp CCCSSCEEEEEECT-------TSSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTS-------------S
T ss_pred ecccccEEEEEECC-------CCCEEEEEeCCCeEEEEECC-CCCEEEEeccCCCCEEEEEEecCC-------------C
Confidence 46888899999863 567888887766 9999995 566777788899999999999865 3
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC----CeEE
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP----RIVA 206 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~----~iLA 206 (994)
+||+.+. +++|++||+.+++++.++..+ ..|.+++|++ .+|+
T Consensus 671 ~l~s~~~---------------------------------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 717 (1249)
T 3sfz_A 671 YIATCSA---------------------------------DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA 717 (1249)
T ss_dssp EEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEE
T ss_pred EEEEEeC---------------------------------CCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEE
Confidence 6665321 368999999999999999754 6899999987 2566
Q ss_pred EEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccC--CeeeccCCcc-CCCcCCCC
Q 001935 207 VGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRL-SPQNLTPS 280 (994)
Q Consensus 207 Vgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~--~~~iwd~G~~-s~qsltp~ 280 (994)
++. ++.|++||+.+.+.+.++..|..+ ...+++++ ++|+.++. .+.+|+.... ....+...
T Consensus 718 sg~~d~~v~vwd~~~~~~~~~~~~h~~~-------------v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 784 (1249)
T 3sfz_A 718 TGSNDFFLKLWDLNQKECRNTMFGHTNS-------------VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 784 (1249)
T ss_dssp EEETTSCEEEEETTSSSEEEEECCCSSC-------------EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECC
T ss_pred EEeCCCeEEEEECCCcchhheecCCCCC-------------EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceeccc
Confidence 655 557999999999998888776542 24567776 67777654 4678874110 00000000
Q ss_pred CCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 001935 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (994)
Q Consensus 281 ~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~ 360 (994)
.... .+. ... . ..........++++++.. +. ..++.|.+||+.++.
T Consensus 785 ~~~~--~~~--------------~~~----~---------~~~~~v~~~~~s~dg~~l----~~-~~~~~v~~~d~~~~~ 830 (1249)
T 3sfz_A 785 RFFL--SSE--------------DPP----E---------DVEVIVKCCSWSADGDKI----IV-AAKNKVLLFDIHTSG 830 (1249)
T ss_dssp CCC-------------------------------------CCCCCBCCCCBCTTSSEE----EE-EETTEEEEEETTTCC
T ss_pred cccc--ccC--------------Ccc----c---------cccceEEEEEECCCCCEE----EE-EcCCcEEEEEecCCC
Confidence 0000 000 000 0 000001122333333322 12 237899999999999
Q ss_pred EEEEec-cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE
Q 001935 361 IISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (994)
Q Consensus 361 ~i~~~~-aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaF 439 (994)
.+..+. +|..+|.+++|+|+|++|++++.+|+ |+||++.. + ..+..+ .| +...|.+++|
T Consensus 831 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~-v~vwd~~~-------~----------~~~~~~-~~-h~~~v~~v~~ 890 (1249)
T 3sfz_A 831 LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC-VELWNIDS-------R----------LKVADC-RG-HLSWVHGVMF 890 (1249)
T ss_dssp EEEEEECSSSSCCCEEEECSSTTEEEEECSSSC-EEEEETTT-------T----------EEEEEE-CC-CSSCEEEEEE
T ss_pred ceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCe-EEEEEcCC-------C----------ceeeec-CC-CccceEEEEE
Confidence 887776 89999999999999999999999776 99999853 2 455665 34 3467999999
Q ss_pred ccCCCEEEEEeCCCeEEEEecCC
Q 001935 440 SHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 440 SpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
+||+++|++++.||+|++|++..
T Consensus 891 spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 891 SPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEEHHH
T ss_pred CCCCCEEEEEeCCCeEEEEEccc
Confidence 99999999999999999999864
No 59
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.8e-20 Score=201.49 Aligned_cols=274 Identities=13% Similarity=0.087 Sum_probs=178.8
Q ss_pred eEEEEE----------ecCc-EEEEEccCCCc--ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCC
Q 001935 76 QVLLLG----------YQNG-FQVLDVEDASN--FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTN 142 (994)
Q Consensus 76 ~vL~lG----------y~~G-~qVWDv~~~g~--v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~ 142 (994)
.+|++| ..+| ++|||+..... ....+ .|.++|.++++.|++ .+|++.+.
T Consensus 26 ~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~-------------~~l~~~~~---- 87 (416)
T 2pm9_A 26 PLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNN-------------KIIAGALD---- 87 (416)
T ss_dssp CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSS-------------SCEEEEES----
T ss_pred CEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCC-------------CeEEEEcc----
Confidence 478887 4444 99999964321 22223 478899999998765 35564221
Q ss_pred CCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCC----CeEEEEEe-CCCcEEEEEecC---CeEEEEe-CCeE
Q 001935 143 TLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQS----HCYEHVLR-FRSSVCMVRCSP---RIVAVGL-ATQI 213 (994)
Q Consensus 143 ~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlkt----ge~V~tL~-f~S~V~sV~~S~---~iLAVgl-~~~I 213 (994)
+++|++||+.+ .+.+..+. +...|.++++++ ++|+++. ++.|
T Consensus 88 -----------------------------dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 88 -----------------------------NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEI 138 (416)
T ss_dssp -----------------------------SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCE
T ss_pred -----------------------------CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeE
Confidence 36799999988 45777776 456899999986 4677665 5689
Q ss_pred EEEECCCCc------eeEEEe---ecCCccccCCCccccccCccceEEcc---cEEEEccC--CeeeccCCccCCCcCCC
Q 001935 214 YCFDALTLE------NKFSVL---TYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASN--TLLLSNSGRLSPQNLTP 279 (994)
Q Consensus 214 ~IwDa~Tle------~l~tL~---t~p~p~~~~~g~~~vnv~~gplAlgp---RwLAyas~--~~~iwd~G~~s~qsltp 279 (994)
++||+.+.+ ....+. .+.. ....+++.+ ++|+.++. .+.+|+...
T Consensus 139 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------------~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-------- 197 (416)
T 2pm9_A 139 FIWDMNKCTESPSNYTPLTPGQSMSSVD-------------EVISLAWNQSLAHVFASAGSSNFASIWDLKA-------- 197 (416)
T ss_dssp EBCBTTTTSSCTTTCCCBCCCCSCCSSC-------------CCCEEEECSSCTTEEEEESSSSCEEEEETTT--------
T ss_pred EEEECCCCccccccccccccccccCCCC-------------CeeEEEeCCCCCcEEEEEcCCCCEEEEECCC--------
Confidence 999999876 333221 1111 124567765 46666543 467787311
Q ss_pred CCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCC---eEEEEEC
Q 001935 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG---IVVVKDF 356 (994)
Q Consensus 280 ~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG---~V~VwDl 356 (994)
+..+..+..... ..+. ......+.+++... ..++.+..+| .|+|||+
T Consensus 198 -----------~~~~~~~~~~~~---~~~~-------------~~~v~~~~~~~~~~---~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 198 -----------KKEVIHLSYTSP---NSGI-------------KQQLSVVEWHPKNS---TRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp -----------TEEEEEECCCCC---SSCC-------------CCCEEEEEECSSCT---TEEEEEECCSSSCCCCEEET
T ss_pred -----------CCcceEEecccc---cccc-------------CCceEEEEECCCCC---CEEEEEECCCCCceEEEEeC
Confidence 000000000000 0000 00001111222211 1234556677 9999999
Q ss_pred CCC-cEEEEec-cCCCCeEEEEECC-CCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccccc
Q 001935 357 VTR-AIISQFK-AHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSAT 433 (994)
Q Consensus 357 ~s~-~~i~~~~-aHtspIsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~ 433 (994)
.++ ..+..+. +|..+|.+|+|+| +|++|++++.+|+ |+||++.. + ..+.++. + +...
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~-------~----------~~~~~~~-~-~~~~ 307 (416)
T 2pm9_A 248 RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPES-------A----------EQLSQFP-A-RGNW 307 (416)
T ss_dssp TSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSS-------C----------CEEEEEE-C-SSSC
T ss_pred CCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCC-------C----------ccceeec-C-CCCc
Confidence 986 6778888 9999999999999 9999999999665 99999853 2 4666664 3 3457
Q ss_pred EEEEEEccCC-CEEEEEeCCCeEEEEecCCCCCCc
Q 001935 434 IQDICFSHYS-QWIAIVSSKGTCHVFVLSPFGGDS 467 (994)
Q Consensus 434 I~sIaFSpDg-~~LAsgS~dGTVhIw~I~~~gg~~ 467 (994)
|.+++|+||+ ++|++++.||+|+||++.......
T Consensus 308 v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 308 CFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp CCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred eEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 9999999999 899999999999999998765443
No 60
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.85 E-value=2.5e-20 Score=205.34 Aligned_cols=259 Identities=10% Similarity=0.121 Sum_probs=169.5
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc----------ceEeeeecc------------CCEEEE
Q 001935 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN----------FNELVSKRD------------GPVSFL 111 (994)
Q Consensus 55 ~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~----------v~ells~hd------------GpV~~v 111 (994)
+.+.|..+.|.. ++++|++|..+| ++|||++.... +...+..|. ++|..+
T Consensus 27 ~~~~V~~v~~s~-------~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 27 EADIISTVEFNH-------SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp GGGSEEEEEECS-------SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred ccCcEEEEEECC-------CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEE
Confidence 568899999973 567888888776 89999964321 455677787 889999
Q ss_pred EEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEE-----
Q 001935 112 QMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE----- 186 (994)
Q Consensus 112 ~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V----- 186 (994)
++.|+.. ..+|++.+. +++|++||+.+++..
T Consensus 100 ~~~~~~~-----------~~~l~s~s~---------------------------------d~~i~iw~~~~~~~~~~~~~ 135 (447)
T 3dw8_B 100 RWLPQKN-----------AAQFLLSTN---------------------------------DKTIKLWKISERDKRPEGYN 135 (447)
T ss_dssp EECCCCS-----------SSEEEEEEC---------------------------------SSCEEEEEEEEEEEEEECCS
T ss_pred EEcCCCC-----------cceEEEeCC---------------------------------CCeEEEEecccccCCcceec
Confidence 9998641 125554321 367999999875542
Q ss_pred ----------------------------------EEE--eCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCc-eeEEE
Q 001935 187 ----------------------------------HVL--RFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLE-NKFSV 227 (994)
Q Consensus 187 ----------------------------------~tL--~f~S~V~sV~~S~--~iLAVgl~~~I~IwDa~Tle-~l~tL 227 (994)
..+ .+...|.++++++ ++|+++.++.|++||+.+.. .+..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~ 215 (447)
T 3dw8_B 136 LKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIV 215 (447)
T ss_dssp CC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEE
T ss_pred ccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeee
Confidence 122 2456899999987 68888877789999998433 22222
Q ss_pred eecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhc
Q 001935 228 LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (994)
Q Consensus 228 ~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~ 307 (994)
...+.. . .+ . .. ....++| +|++..
T Consensus 216 ~~~~~~-~--~~----~--~~----~v~~~~~---------------------------~p~~~~--------------- 240 (447)
T 3dw8_B 216 DIKPAN-M--EE----L--TE----VITAAEF---------------------------HPNSCN--------------- 240 (447)
T ss_dssp ECCCSS-G--GG----C--CC----CEEEEEE---------------------------CSSCTT---------------
T ss_pred eccccc-c--cc----c--Cc----ceEEEEE---------------------------CCCCCc---------------
Confidence 111110 0 00 0 00 0011111 111101
Q ss_pred ccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE----EEEeccCCC------------C
Q 001935 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI----ISQFKAHTS------------P 371 (994)
Q Consensus 308 Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~----i~~~~aHts------------p 371 (994)
.+++++.||.|+|||+.+++. +..+.+|.. +
T Consensus 241 ---------------------------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (447)
T 3dw8_B 241 ---------------------------------TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISS 287 (447)
T ss_dssp ---------------------------------EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTC
T ss_pred ---------------------------------EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCce
Confidence 123456899999999999886 788999986 9
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-----------c---cEEEE
Q 001935 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----------A---TIQDI 437 (994)
Q Consensus 372 IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~-----------a---~I~sI 437 (994)
|.+|+|+|+|++|++++. | .|+|||+... + ..+..+. ++.. . .+..+
T Consensus 288 v~~~~~s~~g~~l~~~~~-~-~v~iwd~~~~------~----------~~~~~~~-~~~~~~~~l~~~~~~~~i~~~~~~ 348 (447)
T 3dw8_B 288 ISDVKFSHSGRYMMTRDY-L-SVKVWDLNME------N----------RPVETYQ-VHEYLRSKLCSLYENDCIFDKFEC 348 (447)
T ss_dssp EEEEEECTTSSEEEEEES-S-EEEEEETTCC------S----------SCSCCEE-SCGGGTTTHHHHHHTSGGGCCCCE
T ss_pred EEEEEECCCCCEEEEeeC-C-eEEEEeCCCC------c----------cccceee-ccccccccccccccccccccceEE
Confidence 999999999999999998 5 5999998531 1 1222332 2211 0 13459
Q ss_pred EEccCCCEEEEEeCCCeEEEEecCCCCCCcccccc
Q 001935 438 CFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (994)
Q Consensus 438 aFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H 472 (994)
+|+||+++|++++.||+|+||++.... ...+..|
T Consensus 349 ~~s~~~~~l~s~s~dg~v~iwd~~~~~-~~~~~~~ 382 (447)
T 3dw8_B 349 CWNGSDSVVMTGSYNNFFRMFDRNTKR-DITLEAS 382 (447)
T ss_dssp EECTTSSEEEEECSTTEEEEEETTTCC-EEEEECC
T ss_pred EECCCCCEEEEeccCCEEEEEEcCCCc-ceeeeec
Confidence 999999999999999999999997643 2344444
No 61
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4.4e-20 Score=216.18 Aligned_cols=288 Identities=14% Similarity=0.087 Sum_probs=172.6
Q ss_pred CeEEEEEecCc-EEEEEccCCCcce----EeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCC
Q 001935 75 KQVLLLGYQNG-FQVLDVEDASNFN----ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQN 149 (994)
Q Consensus 75 ~~vL~lGy~~G-~qVWDv~~~g~v~----ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~ 149 (994)
.++|+.|..+| ++|||++. +++. ..+..|.+.|..|++.|.+. +.....+||.++.
T Consensus 173 ~~~laS~s~D~tI~iWd~~~-~~~~~~~~~~l~~~~~~V~~v~wsp~~~-------~~~~~~~LAs~s~----------- 233 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNT-STLHCVKVQTIVHSFGEVWDLKWHEGCH-------APHLVGCLSFVSQ----------- 233 (524)
T ss_dssp ---------CEEEEEEEEET-TTCCEEEEEEEEECCCSEEEEEECSSCC-------CSSSSCEEEEEET-----------
T ss_pred hhhhccCCCCceEEEEEccC-CCCCceEEEEEEecCCcEEEEEECCCCC-------CCCCCceEEEEec-----------
Confidence 34455454444 89999964 4432 34566778999999998741 1112347775432
Q ss_pred CCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeE-----------EEEEeC-CCcEEEEEecC-CeEEEEe-CCeEEE
Q 001935 150 RSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----------EHVLRF-RSSVCMVRCSP-RIVAVGL-ATQIYC 215 (994)
Q Consensus 150 ~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~-----------V~tL~f-~S~V~sV~~S~-~iLAVgl-~~~I~I 215 (994)
+++|+|||+.+++. ..++.. ...|.+++|++ ..|++|. ++.|++
T Consensus 234 ----------------------DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~l 291 (524)
T 2j04_B 234 ----------------------EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAE 291 (524)
T ss_dssp ----------------------TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEE
T ss_pred ----------------------CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEE
Confidence 36899999987642 134543 46899999976 5677655 568999
Q ss_pred EECCCCce-eEEEeecCCccccCCCccccccCccce--EEcc---cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcC
Q 001935 216 FDALTLEN-KFSVLTYPVPQLAGQGAVGINVGYGPM--AVGP---RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTS 287 (994)
Q Consensus 216 wDa~Tle~-l~tL~t~p~p~~~~~g~~~vnv~~gpl--Algp---RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stS 287 (994)
||+.+.+. ..++..|..+ ...+ ++.+ ++||.++. .+.+|+.... +
T Consensus 292 WD~~~~~~~~~~~~~H~~~-------------V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~--~------------ 344 (524)
T 2j04_B 292 FDLTDPEVPSFYDQVHDSY-------------ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI--A------------ 344 (524)
T ss_dssp EETTBCSSCSEEEECSSSC-------------EEEEEEECCTTSCCEEEEEETTSEEEEECGGGH--H------------
T ss_pred EECCCCCCceEEeeccccc-------------EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC--C------------
Confidence 99987643 4456556442 1223 3443 56777664 4678873100 0
Q ss_pred CCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc
Q 001935 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA 367 (994)
Q Consensus 288 p~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a 367 (994)
. .+++.++. .......+.++|..+ .+++++.|++|+|||+.++.++..|.+
T Consensus 345 ----------------~-----~~~~~~~~----~~~~v~~v~fsp~~~----~l~s~~~d~tv~lwd~~~~~~~~~l~g 395 (524)
T 2j04_B 345 ----------------T-----TKTTVSRF----RGSNLVPVVYCPQIY----SYIYSDGASSLRAVPSRAAFAVHPLVS 395 (524)
T ss_dssp ----------------H-----HCEEEEEC----SCCSCCCEEEETTTT----EEEEECSSSEEEEEETTCTTCCEEEEE
T ss_pred ----------------c-----cccccccc----ccCcccceEeCCCcC----eEEEeCCCCcEEEEECcccccceeeec
Confidence 0 00111110 000011222333322 234667899999999999998889999
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCC-C-------C-ccccCC------------------cce
Q 001935 368 HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG-N-------H-KYDWNS------------------SHV 420 (994)
Q Consensus 368 HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG-~-------~-~~~~~~------------------s~~ 420 (994)
|..+|.+|+|+|+|++||||+.||+ |+||++.........+ . . ...+++ ...
T Consensus 396 H~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~ 474 (524)
T 2j04_B 396 RETTITAIGVSRLHPMVLAGSADGS-LIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDV 474 (524)
T ss_dssp CSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC------
T ss_pred CCCceEEEEeCCCCCeEEEEECCCE-EEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCc
Confidence 9999999999999999999999765 9999874321110000 0 0 000011 122
Q ss_pred EEEEEecccccccEEEEEEccCC---CEEEEEeCCCeEEEEecCC
Q 001935 421 HLYKLHRGITSATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg---~~LAsgS~dGTVhIw~I~~ 462 (994)
++.+| +|+ ...|++|+|+||+ ++||+|+.+|+|+||++.-
T Consensus 475 ~~~~l-~gh-~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 475 SKAKI-DAH-GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp --------C-CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ceeee-cCC-CceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 33444 343 3579999999995 5999999999999999754
No 62
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.85 E-value=7.3e-20 Score=200.40 Aligned_cols=229 Identities=10% Similarity=0.082 Sum_probs=160.8
Q ss_pred CCeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCC
Q 001935 74 FKQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (994)
Q Consensus 74 ~~~vL~lGy~~-G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~ 152 (994)
+++.|++|..+ .++|||+. .++....+..+ ..+....+.|++ .+||+.+.
T Consensus 67 ~g~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~-~~~~~~~~~~~~-------------~~l~~~~~-------------- 117 (420)
T 3vl1_A 67 VGSHLYKARLDGHDFLFNTI-IRDGSKMLKRA-DYTAVDTAKLQM-------------RRFILGTT-------------- 117 (420)
T ss_dssp EETTEEEEEETTEEEEEECC-SEETTTTSCSC-CEEEEEEECSSS-------------CEEEEEET--------------
T ss_pred cCCeEEEEEcCCcEEEEEec-ccceeeEEecC-CceEEEEEecCC-------------CEEEEEEC--------------
Confidence 34455566555 59999985 34444444444 334444555543 35665321
Q ss_pred ccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE-eCCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEe
Q 001935 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL-RFRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVL 228 (994)
Q Consensus 153 ~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL-~f~S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~l~tL~ 228 (994)
+++|+|||+++++.+..+ .+...|.++++++ ++|+++. ++.|++||+.+.+.+.++.
T Consensus 118 -------------------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 178 (420)
T 3vl1_A 118 -------------------EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI 178 (420)
T ss_dssp -------------------TSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE
T ss_pred -------------------CCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc
Confidence 367999999999998887 4567999999987 4677655 5689999999988888776
Q ss_pred ecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcc
Q 001935 229 TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (994)
Q Consensus 229 t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~G 308 (994)
.|..+ ...+++ .. ++..
T Consensus 179 ~h~~~-------------v~~~~~-------~~---------------------------~~~~---------------- 195 (420)
T 3vl1_A 179 GHRAT-------------VTDIAI-------ID---------------------------RGRN---------------- 195 (420)
T ss_dssp CCSSC-------------EEEEEE-------ET---------------------------TTTE----------------
T ss_pred CCCCc-------------EEEEEE-------cC---------------------------CCCE----------------
Confidence 65432 111222 21 1111
Q ss_pred cceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC--------------------
Q 001935 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-------------------- 368 (994)
Q Consensus 309 i~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aH-------------------- 368 (994)
+++++.||.|+|||+.+++.+..+..|
T Consensus 196 ---------------------------------l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 242 (420)
T 3vl1_A 196 ---------------------------------VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL 242 (420)
T ss_dssp ---------------------------------EEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC
T ss_pred ---------------------------------EEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee
Confidence 123457888999999988888888753
Q ss_pred ----CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC
Q 001935 369 ----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ 444 (994)
Q Consensus 369 ----tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~ 444 (994)
..+|.+++|+|+|++|++++.+|+ |+|||+.. + ..+..+..+ +...|.+++|+||++
T Consensus 243 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~i~d~~~-------~----------~~~~~~~~~-~~~~v~~~~~~~~~~ 303 (420)
T 3vl1_A 243 HEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFS-------K----------EQTIQLPSK-FTCSCNSLTVDGNNA 303 (420)
T ss_dssp GGGCCCCCCTTCSSCTTEEEEEEETTSC-EEEEETTT-------C----------CEEEEECCT-TSSCEEEEEECSSCT
T ss_pred eecccCcccceEEcCCCCEEEEEcCCCe-EEEEECCC-------C----------ceeEEcccc-cCCCceeEEEeCCCC
Confidence 355556667899999999999777 99999853 2 355666544 346799999999999
Q ss_pred -EEEEEeCCCeEEEEecCCCCC
Q 001935 445 -WIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 445 -~LAsgS~dGTVhIw~I~~~gg 465 (994)
+|++++.||+|+||++.....
T Consensus 304 ~~l~~g~~dg~i~vwd~~~~~~ 325 (420)
T 3vl1_A 304 NYIYAGYENGMLAQWDLRSPEC 325 (420)
T ss_dssp TEEEEEETTSEEEEEETTCTTS
T ss_pred CEEEEEeCCCeEEEEEcCCCcC
Confidence 999999999999999987544
No 63
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.85 E-value=6.4e-19 Score=191.06 Aligned_cols=259 Identities=17% Similarity=0.127 Sum_probs=166.9
Q ss_pred ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEE
Q 001935 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (994)
Q Consensus 97 v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVr 176 (994)
+..++.+|.++|.++.+.+.+.. ....++|+..+ .+++|+
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~-------~~d~~~l~sgs---------------------------------~D~~v~ 52 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKE-------NEDSPVLISGS---------------------------------RDKTVM 52 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSST-------TCCCCEEEEEE---------------------------------TTSCEE
T ss_pred eeeeeccchhhhhheeeEEEeec-------CCCCCEEEEEc---------------------------------CCCEEE
Confidence 45678889999999998432210 01234666532 146899
Q ss_pred EEECCCC-------eEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCcccccc
Q 001935 177 FYSFQSH-------CYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (994)
Q Consensus 177 LWDlktg-------e~V~tL~f~-S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv 245 (994)
|||+.++ ....++..+ ..|.++++++ .+|+++. ++.|++||+.+.+.+.++..|..+
T Consensus 53 iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~------------ 120 (343)
T 2xzm_R 53 IWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSE------------ 120 (343)
T ss_dssp EEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSC------------
T ss_pred EEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCc------------
Confidence 9999753 456667544 6899999987 4666655 668999999999988888877552
Q ss_pred CccceEEcc--cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeecccccccc
Q 001935 246 GYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 321 (994)
Q Consensus 246 ~~gplAlgp--RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~ 321 (994)
...+++++ ++|+.++. .+.+|+........+... ......+. .+ .+.
T Consensus 121 -v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-------~~~~~~v~----------------~~-----~~~ 171 (343)
T 2xzm_R 121 -VYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK-------ENHSDWVS----------------CV-----RYS 171 (343)
T ss_dssp -EEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTT-------TSCSSCEE----------------EE-----EEC
T ss_pred -EEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecc-------cCCCceee----------------ee-----eec
Confidence 24577776 67776653 577897421000000000 00000000 00 001
Q ss_pred CCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCC
Q 001935 322 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 322 p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (994)
|.+.. .....+.. ..+++++.||.|+||| ...+.+..+.+|..+|.+|+|+|+|++|||++.+|+ |+|||+..
T Consensus 172 ~~~~~-~~~~~~~~----~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~~ 244 (343)
T 2xzm_R 172 PIMKS-ANKVQPFA----PYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDILN 244 (343)
T ss_dssp CCCCS-CSCCCSSC----CEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESSC
T ss_pred ccccc-ccccCCCC----CEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECCC
Confidence 11100 00000111 1345778999999999 456778899999999999999999999999999765 99999842
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 402 ~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
. + .....+..+ ..|.+++|+||+++|+++ .|++|+||++...
T Consensus 245 ~------~----------~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 245 L------T----------YPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp C------S----------SCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred C------c----------ccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 1 1 122233222 359999999999998866 4778999998764
No 64
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.85 E-value=6e-19 Score=210.23 Aligned_cols=280 Identities=14% Similarity=0.106 Sum_probs=199.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
..+|.+.|..+.|.. ++..|++|..+| ++|||+. .+.....+..|.++|.++.+.|++
T Consensus 9 ~~~h~~~v~~i~~sp-------~~~~la~~~~~g~v~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~------------- 67 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHP-------TEPWVLTTLYSGRVEIWNYE-TQVEVRSIQVTETPVRAGKFIARK------------- 67 (814)
T ss_dssp EEEECSCEEEEEECS-------SSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEEEGGG-------------
T ss_pred eecCCCceEEEEECC-------CCCEEEEEeCCCEEEEEECC-CCceEEEEecCCCcEEEEEEeCCC-------------
Confidence 356888999999963 567888888776 8999995 577778888999999999999865
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEEE
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAV 207 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~S~V~sV~~S~--~iLAV 207 (994)
.+|++.+. +++|++||+++++.+.++.. ...|.+++|++ +.|++
T Consensus 68 ~~l~~~~~---------------------------------dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 114 (814)
T 3mkq_A 68 NWIIVGSD---------------------------------DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114 (814)
T ss_dssp TEEEEEET---------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred CEEEEEeC---------------------------------CCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEE
Confidence 46665321 36899999999999999974 56899999998 46776
Q ss_pred Ee-CCeEEEEECCCC-ceeEEEeecCCccccCCCccccccCccceEEcc---cEEEEccC--CeeeccCCccCCCcCCCC
Q 001935 208 GL-ATQIYCFDALTL-ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASN--TLLLSNSGRLSPQNLTPS 280 (994)
Q Consensus 208 gl-~~~I~IwDa~Tl-e~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp---RwLAyas~--~~~iwd~G~~s~qsltp~ 280 (994)
+. ++.|++||+.+. .....+..+..+ ...++++| ++|+.++. .+.+|+.....+.
T Consensus 115 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~-------------v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~----- 176 (814)
T 3mkq_A 115 GSDDLTVKLWNWENNWALEQTFEGHEHF-------------VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----- 176 (814)
T ss_dssp EETTSEEEEEEGGGTSEEEEEEECCSSC-------------EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS-----
T ss_pred EcCCCEEEEEECCCCceEEEEEcCCCCc-------------EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce-----
Confidence 65 458999999886 445555555442 23466765 56776653 4677874211000
Q ss_pred CCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCC--ccccccccccccCCCCeEEEEECCC
Q 001935 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS--VWKVGRHAGADMDNAGIVVVKDFVT 358 (994)
Q Consensus 281 ~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~--~~k~g~~~~as~s~dG~V~VwDl~s 358 (994)
. ++... .........+++ +.. .++.+..+|.|++||+.+
T Consensus 177 ------------~------------------~~~~~-----~~~~v~~~~~~~~~~~~----~l~~~~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 177 ------------F------------------TLTTG-----QERGVNYVDYYPLPDKP----YMITASDDLTIKIWDYQT 217 (814)
T ss_dssp ------------E------------------EEECC-----CTTCCCEEEECCSTTCC----EEEEECTTSEEEEEETTT
T ss_pred ------------e------------------EEecC-----CCCCEEEEEEEECCCCC----EEEEEeCCCEEEEEECCC
Confidence 0 00000 000000011111 111 244677899999999999
Q ss_pred CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 001935 359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC 438 (994)
Q Consensus 359 ~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIa 438 (994)
++.+..+.+|..+|.+++|+|+|.+|++++.+|+ |+||++.. + ..+..+..+ ...|++++
T Consensus 218 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~-------~----------~~~~~~~~~--~~~v~~~~ 277 (814)
T 3mkq_A 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSST-------Y----------KVEKTLNVG--LERSWCIA 277 (814)
T ss_dssp TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTT-------C----------SEEEEECCS--SSSEEEEE
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCC-------C----------cEEEEeecC--CCcEEEEE
Confidence 9999999999999999999999999999999776 99999853 2 356666432 35799999
Q ss_pred EccCCC--EEEEEeCCCeEEEEecCCC
Q 001935 439 FSHYSQ--WIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 439 FSpDg~--~LAsgS~dGTVhIw~I~~~ 463 (994)
|+||++ ++++++ ++.+.+|++...
T Consensus 278 ~~~~~~~~~~~~~~-~~~~~~~~~~~~ 303 (814)
T 3mkq_A 278 THPTGRKNYIASGF-DNGFTVLSLGND 303 (814)
T ss_dssp ECTTCGGGEEEEEE-TTEEEEEECSCC
T ss_pred EccCCCceEEEEEe-CCCEEEEEcCCC
Confidence 999998 566555 666788987654
No 65
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.85 E-value=2.1e-19 Score=190.39 Aligned_cols=276 Identities=14% Similarity=0.080 Sum_probs=184.6
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCc---ceEeeeeccCCEEEEEEecCCCCCCCCCCcc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASN---FNELVSKRDGPVSFLQMQPFPVKDDGCEGFR 127 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~---v~ells~hdGpV~~v~~lP~p~~s~~~D~F~ 127 (994)
..+|++.|..+.|.. ++..|++|..+| ++|||+.. +. ....+..|.++|.++++.|++
T Consensus 7 ~~~h~~~v~~~~~s~-------~~~~l~~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~---------- 68 (342)
T 1yfq_A 7 EQAPKDYISDIKIIP-------SKSLLLITSWDGSLTVYKFDI-QAKNVDLLQSLRYKHPLLCCNFIDNT---------- 68 (342)
T ss_dssp SSCCSSCEEEEEEEG-------GGTEEEEEETTSEEEEEEEET-TTTEEEEEEEEECSSCEEEEEEEESS----------
T ss_pred ccCCCCcEEEEEEcC-------CCCEEEEEcCCCeEEEEEeCC-CCccccceeeeecCCceEEEEECCCC----------
Confidence 347899999999984 445677776655 99999964 43 123344788999999999865
Q ss_pred ccCc-EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEEC-CCCeEEEEEe---CCCcEEEEEecC
Q 001935 128 KLHP-FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-QSHCYEHVLR---FRSSVCMVRCSP 202 (994)
Q Consensus 128 ~srp-LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDl-ktge~V~tL~---f~S~V~sV~~S~ 202 (994)
. +|++.+ .+++|++||+ .+++. ..+. +...|.++++++
T Consensus 69 ---~~~l~~~~---------------------------------~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~ 111 (342)
T 1yfq_A 69 ---DLQIYVGT---------------------------------VQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG 111 (342)
T ss_dssp ---SEEEEEEE---------------------------------TTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET
T ss_pred ---CcEEEEEc---------------------------------CCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC
Confidence 4 455422 1367999999 88877 4444 567999999985
Q ss_pred -CeEEEEe-CCeEEEEECCC---------CceeEEEeecCCccccCCCccccccCccceEEcccEEEEccC--CeeeccC
Q 001935 203 -RIVAVGL-ATQIYCFDALT---------LENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN--TLLLSNS 269 (994)
Q Consensus 203 -~iLAVgl-~~~I~IwDa~T---------le~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~--~~~iwd~ 269 (994)
+.|+++. ++.|++||+.+ .+.+.++. ++. ....+++.+..|+.++. .+.+|+.
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~-------------~v~~~~~~~~~l~~~~~d~~i~i~d~ 177 (342)
T 1yfq_A 112 DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKN-------------KIFTMDTNSSRLIVGMNNSQVQWFRL 177 (342)
T ss_dssp TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCC-------------CEEEEEECSSEEEEEESTTEEEEEES
T ss_pred CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCC-------------ceEEEEecCCcEEEEeCCCeEEEEEC
Confidence 6666654 56899999876 44333322 221 12346676655655543 4667763
Q ss_pred Cc-cCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCC-ccccccccccccCC
Q 001935 270 GR-LSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNS-VWKVGRHAGADMDN 347 (994)
Q Consensus 270 G~-~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~-~~k~g~~~~as~s~ 347 (994)
.. ... .+.. .. ... ......+.+++ ..+ .++.++.
T Consensus 178 ~~~~~~-----------------~~~~-~~--------~~~-------------~~~i~~i~~~~~~~~----~l~~~~~ 214 (342)
T 1yfq_A 178 PLCEDD-----------------NGTI-EE--------SGL-------------KYQIRDVALLPKEQE----GYACSSI 214 (342)
T ss_dssp SCCTTC-----------------CCEE-EE--------CSC-------------SSCEEEEEECSGGGC----EEEEEET
T ss_pred Cccccc-----------------ccee-ee--------cCC-------------CCceeEEEECCCCCC----EEEEEec
Confidence 21 000 0000 00 000 00001112222 222 2346678
Q ss_pred CCeEEEEECCCC------cEEEEeccCCC---------CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCc
Q 001935 348 AGIVVVKDFVTR------AIISQFKAHTS---------PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHK 412 (994)
Q Consensus 348 dG~V~VwDl~s~------~~i~~~~aHts---------pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~ 412 (994)
+|.|+|||+... +.+..++.|.. +|.+++|+|+|++||+++.+|+ |+|||+.. +
T Consensus 215 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~~~-------~--- 283 (342)
T 1yfq_A 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQT-------R--- 283 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTT-------T---
T ss_pred CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcCcc-------H---
Confidence 999999999887 77888998866 9999999999999999999776 99999853 3
Q ss_pred cccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCe-EEEEec
Q 001935 413 YDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGT-CHVFVL 460 (994)
Q Consensus 413 ~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGT-VhIw~I 460 (994)
..+.++ .+++...|.+++ ||+++|++++.||+ .+.|..
T Consensus 284 -------~~~~~~-~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 284 -------KKIKNF-AKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp -------EEEEEC-CCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred -------hHhhhh-hcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 456665 454367899999 99999999999999 666554
No 66
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.85 E-value=2.5e-18 Score=191.98 Aligned_cols=272 Identities=15% Similarity=0.145 Sum_probs=191.9
Q ss_pred CCCCCCcE-EEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 52 SEDLKDQV-TWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 52 ~~~~kd~V-~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
..+|.+.| ..+.|+ ++.|++|..+| ++|||+. .+++...+..|.++|.++.+.+
T Consensus 114 l~~h~~~v~~~~~~~---------g~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~-------------- 169 (445)
T 2ovr_B 114 LKGHDDHVITCLQFC---------GNRIVSGSDDNTLKVWSAV-TGKCLRTLVGHTGGVWSSQMRD-------------- 169 (445)
T ss_dssp EECSTTSCEEEEEEE---------TTEEEEEETTSCEEEEETT-TCCEEEECCCCSSCEEEEEEET--------------
T ss_pred ecccCCCcEEEEEEc---------CCEEEEEECCCcEEEEECC-CCcEEEEEcCCCCCEEEEEecC--------------
Confidence 35677765 444443 34667676665 9999995 5777888889999999998762
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecCCeEEEE
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSPRIVAVG 208 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~S~V~sV~~S~~iLAVg 208 (994)
.+|++.+ .+++|++||+++++++.++.. ...|.++.++++.|+++
T Consensus 170 -~~l~s~~---------------------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~ 215 (445)
T 2ovr_B 170 -NIIISGS---------------------------------TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG 215 (445)
T ss_dssp -TEEEEEE---------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEE
T ss_pred -CEEEEEe---------------------------------CCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEE
Confidence 2555432 136899999999999999974 46899999999888876
Q ss_pred e-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccC--CeeeccCCccCCCcCCCCCCCCC
Q 001935 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASN--TLLLSNSGRLSPQNLTPSGVSPS 285 (994)
Q Consensus 209 l-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~--~~~iwd~G~~s~qsltp~~~S~s 285 (994)
. ++.|++||+.+.+.+..+..+..+ ...+++..++|+.++. .+.+|+...
T Consensus 216 s~dg~i~~wd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~~~~~dg~i~iwd~~~-------------- 268 (445)
T 2ovr_B 216 SRDATLRVWDIETGQCLHVLMGHVAA-------------VRCVQYDGRRVVSGAYDFMVKVWDPET-------------- 268 (445)
T ss_dssp ETTSEEEEEESSSCCEEEEEECCSSC-------------EEEEEECSSCEEEEETTSCEEEEEGGG--------------
T ss_pred eCCCEEEEEECCCCcEEEEEcCCccc-------------EEEEEECCCEEEEEcCCCEEEEEECCC--------------
Confidence 6 568999999999988888766542 2335555666666553 456676310
Q ss_pred cCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe
Q 001935 286 TSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF 365 (994)
Q Consensus 286 tSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~ 365 (994)
+..+ +++..+... ...+.++ ...++.++.||.|++||+.+++.+..+
T Consensus 269 -----~~~~----------------~~~~~~~~~------v~~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~~~ 315 (445)
T 2ovr_B 269 -----ETCL----------------HTLQGHTNR------VYSLQFD------GIHVVSGSLDTSIRVWDVETGNCIHTL 315 (445)
T ss_dssp -----TEEE----------------EEECCCSSC------EEEEEEC------SSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred -----CcEe----------------EEecCCCCc------eEEEEEC------CCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 0000 011000000 0000110 012456778999999999999999999
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc-cccccEEEEEEccCCC
Q 001935 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG-ITSATIQDICFSHYSQ 444 (994)
Q Consensus 366 ~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG-~t~a~I~sIaFSpDg~ 444 (994)
.+|...+.++++ +|.+|++++.+|+ |+|||+.. + ..+..+... .+...|.+++|+ ++
T Consensus 316 ~~~~~~v~~~~~--~~~~l~~~~~dg~-i~vwd~~~-------~----------~~~~~~~~~~~~~~~v~~~~~~--~~ 373 (445)
T 2ovr_B 316 TGHQSLTSGMEL--KDNILVSGNADST-VKIWDIKT-------G----------QCLQTLQGPNKHQSAVTCLQFN--KN 373 (445)
T ss_dssp CCCCSCEEEEEE--ETTEEEEEETTSC-EEEEETTT-------C----------CEEEEECSTTSCSSCEEEEEEC--SS
T ss_pred cCCcccEEEEEE--eCCEEEEEeCCCe-EEEEECCC-------C----------cEEEEEccCCCCCCCEEEEEEC--CC
Confidence 999999999888 4679999999776 99999853 3 456666431 144679999995 68
Q ss_pred EEEEEeCCCeEEEEecCCC
Q 001935 445 WIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 445 ~LAsgS~dGTVhIw~I~~~ 463 (994)
+|++++.||+|+||++...
T Consensus 374 ~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 374 FVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp EEEEEETTSEEEEEETTTC
T ss_pred EEEEEeCCCeEEEEECCCC
Confidence 9999999999999998764
No 67
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.85 E-value=1.1e-20 Score=204.34 Aligned_cols=240 Identities=13% Similarity=0.100 Sum_probs=154.6
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC-cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEE
Q 001935 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS-NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFL 133 (994)
Q Consensus 56 kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g-~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLL 133 (994)
++.|..+.|. +++++|++|..+| ++|||+.... .....+..|.++|.++++.|++ .+|
T Consensus 11 ~~~v~~~~~s-------~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-------------~~l 70 (377)
T 3dwl_C 11 PKPSYEHAFN-------SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-------------NRI 70 (377)
T ss_dssp SSCCSCCEEC-------SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-------------CCE
T ss_pred CCcEEEEEEC-------CCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-------------CEE
Confidence 3456666665 3567888886555 9999996422 5667778899999999999865 356
Q ss_pred EEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCe---EEEEE-eCCCcEEEEEecC--CeEEE
Q 001935 134 LVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC---YEHVL-RFRSSVCMVRCSP--RIVAV 207 (994)
Q Consensus 134 AvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge---~V~tL-~f~S~V~sV~~S~--~iLAV 207 (994)
+..+. +++|++||+++++ .+..+ .+...|.++++++ ++|++
T Consensus 71 ~s~s~---------------------------------d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 117 (377)
T 3dwl_C 71 VTCSQ---------------------------------DRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAV 117 (377)
T ss_dssp EEEET---------------------------------TSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEE
T ss_pred EEEeC---------------------------------CCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEE
Confidence 65321 3679999999987 44444 4557999999987 45665
Q ss_pred Ee-CCeEEEEECCCCce---eEEEee-cCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCC
Q 001935 208 GL-ATQIYCFDALTLEN---KFSVLT-YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGV 282 (994)
Q Consensus 208 gl-~~~I~IwDa~Tle~---l~tL~t-~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~ 282 (994)
+. ++.|++||+.+.+. ...+.. |..+ ...+++.+
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~-------------v~~~~~~~---------------------------- 156 (377)
T 3dwl_C 118 GSGARVISVCYFEQENDWWVSKHLKRPLRST-------------ILSLDWHP---------------------------- 156 (377)
T ss_dssp EESSSCEEECCC-----CCCCEEECSSCCSC-------------EEEEEECT----------------------------
T ss_pred EecCCeEEEEEECCcccceeeeEeecccCCC-------------eEEEEEcC----------------------------
Confidence 54 66899999987663 344433 2221 11122221
Q ss_pred CCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECC-----
Q 001935 283 SPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV----- 357 (994)
Q Consensus 283 S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~----- 357 (994)
++. .+++++.||.|+|||+.
T Consensus 157 ------~~~-------------------------------------------------~l~~~~~d~~i~iwd~~~~~~~ 181 (377)
T 3dwl_C 157 ------NNV-------------------------------------------------LLAAGCADRKAYVLSAYVRDVD 181 (377)
T ss_dssp ------TSS-------------------------------------------------EEEEEESSSCEEEEEECCSSCC
T ss_pred ------CCC-------------------------------------------------EEEEEeCCCEEEEEEEEecccC
Confidence 111 01234567888888874
Q ss_pred -------------CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 001935 358 -------------TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (994)
Q Consensus 358 -------------s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~ 424 (994)
.++.+..+ +|..+|.+++|+|+|++||+++.+|+ |+||++.. +. .....+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~~-------~~------~~~~~~~~ 246 (377)
T 3dwl_C 182 AKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPSA-------PE------QPPRALIT 246 (377)
T ss_dssp -CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEECS-------TT------SCEEECCC
T ss_pred CCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECCC-------CC------CcceeeEe
Confidence 35567777 99999999999999999999999665 99999864 21 00011344
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 425 L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
+. + +...|.+++|+||+++|++++.++++ +|....
T Consensus 247 ~~-~-~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 247 VK-L-SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EE-C-SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred ec-C-CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 43 3 34579999999999999999877776 777664
No 68
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.84 E-value=9.1e-19 Score=195.63 Aligned_cols=231 Identities=16% Similarity=0.220 Sum_probs=173.2
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
.++...|..+.|| ++.|++|..+| ++|||+. .+++...+..|.++|.++.+. + .
T Consensus 130 ~~~~~~v~~~~~d---------~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~--~-------------~ 184 (435)
T 1p22_A 130 SETSKGVYCLQYD---------DQKIVSGLRDNTIKIWDKN-TLECKRILTGHTGSVLCLQYD--E-------------R 184 (435)
T ss_dssp CSSCCCEEEEECC---------SSEEEEEESSSCEEEEESS-SCCEEEEECCCSSCEEEEECC--S-------------S
T ss_pred cCCCCcEEEEEEC---------CCEEEEEeCCCeEEEEeCC-CCeEEEEEcCCCCcEEEEEEC--C-------------C
Confidence 4566778888885 24666666555 9999995 577888888999999998852 1 3
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecCCeEEEEe-
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSPRIVAVGL- 209 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~~iLAVgl- 209 (994)
+|++.+ .+++|++||+++++++.++..+ ..|.+++++++.|+++.
T Consensus 185 ~l~sg~---------------------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~ 231 (435)
T 1p22_A 185 VIITGS---------------------------------SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK 231 (435)
T ss_dssp EEEEEE---------------------------------TTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEET
T ss_pred EEEEEc---------------------------------CCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeC
Confidence 556422 1368999999999999999754 68999999998888766
Q ss_pred CCeEEEEECCCCceeE---EEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCc
Q 001935 210 ATQIYCFDALTLENKF---SVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (994)
Q Consensus 210 ~~~I~IwDa~Tle~l~---tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~st 286 (994)
++.|++||+.+.+... .+..|..+ .. .+++.++
T Consensus 232 dg~i~vwd~~~~~~~~~~~~~~~~~~~---------------v~-----~~~~~~~------------------------ 267 (435)
T 1p22_A 232 DRSIAVWDMASPTDITLRRVLVGHRAA---------------VN-----VVDFDDK------------------------ 267 (435)
T ss_dssp TSCEEEEECSSSSCCEEEEEECCCSSC---------------EE-----EEEEETT------------------------
T ss_pred CCcEEEEeCCCCCCceeeeEecCCCCc---------------EE-----EEEeCCC------------------------
Confidence 5579999998876542 22222110 00 1111100
Q ss_pred CCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 001935 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (994)
Q Consensus 287 Sp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~ 366 (994)
.+++++.||.|+|||+.+++.+..+.
T Consensus 268 ------------------------------------------------------~l~s~~~dg~i~vwd~~~~~~~~~~~ 293 (435)
T 1p22_A 268 ------------------------------------------------------YIVSASGDRTIKVWNTSTCEFVRTLN 293 (435)
T ss_dssp ------------------------------------------------------EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ------------------------------------------------------EEEEEeCCCeEEEEECCcCcEEEEEc
Confidence 11245679999999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 001935 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (994)
Q Consensus 367 aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (994)
+|..+|.+++| +|.+|++++.+|+ |+|||+.. | ..+.++. + +...|.+++| |+++|
T Consensus 294 ~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~-------~----------~~~~~~~-~-h~~~v~~~~~--~~~~l 349 (435)
T 1p22_A 294 GHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIEC-------G----------ACLRVLE-G-HEELVRCIRF--DNKRI 349 (435)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTT-------C----------CEEEEEC-C-CSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCC-------C----------CEEEEEe-C-CcCcEEEEEe--cCCEE
Confidence 99999999999 5789999999776 99999863 3 4666664 4 3467999999 89999
Q ss_pred EEEeCCCeEEEEecCCC
Q 001935 447 AIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 447 AsgS~dGTVhIw~I~~~ 463 (994)
++++.||+|+||++...
T Consensus 350 ~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 350 VSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp EEEETTSCEEEEEHHHH
T ss_pred EEEeCCCcEEEEECCCC
Confidence 99999999999998653
No 69
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.84 E-value=9.5e-20 Score=204.24 Aligned_cols=282 Identities=12% Similarity=0.097 Sum_probs=177.7
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEe--eeeccCCEEEEEEecCCCCCCCCCCccccC
Q 001935 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNEL--VSKRDGPVSFLQMQPFPVKDDGCEGFRKLH 130 (994)
Q Consensus 54 ~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~el--ls~hdGpV~~v~~lP~p~~s~~~D~F~~sr 130 (994)
.+.++|+.+.|.- ...++|++|..+| ++|||++. ++...+ +..|.++|.+|+|.|.. .
T Consensus 117 ~~~~~V~~l~~~P------~~~~~lasGs~dg~i~lWd~~~-~~~~~~~~~~gH~~~V~~l~f~p~~------------~ 177 (435)
T 4e54_B 117 PFDRRATSLAWHP------THPSTVAVGSKGGDIMLWNFGI-KDKPTFIKGIGAGGSITGLKFNPLN------------T 177 (435)
T ss_dssp ECSSCEEEEEECS------SCTTCEEEEETTSCEEEECSSC-CSCCEEECCCSSSCCCCEEEECSSC------------T
T ss_pred CCCCCEEEEEEeC------CCCCEEEEEeCCCEEEEEECCC-CCceeEEEccCCCCCEEEEEEeCCC------------C
Confidence 4567798888862 1356888888877 99999964 433333 34689999999998732 1
Q ss_pred cEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC---CcEEEEEecC--CeE
Q 001935 131 PFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR---SSVCMVRCSP--RIV 205 (994)
Q Consensus 131 pLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~---S~V~sV~~S~--~iL 205 (994)
.+|+..+ .+++|+|||++++........+ ..+.++++++ ++|
T Consensus 178 ~~l~s~s---------------------------------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (435)
T 4e54_B 178 NQFYASS---------------------------------MEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMV 224 (435)
T ss_dssp TEEEEEC---------------------------------SSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEE
T ss_pred CEEEEEe---------------------------------CCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEE
Confidence 2555422 1468999999877654333332 3567888876 577
Q ss_pred EEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc---cEEEEccC--CeeeccCCccC-CCcCC
Q 001935 206 AVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASN--TLLLSNSGRLS-PQNLT 278 (994)
Q Consensus 206 AVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp---RwLAyas~--~~~iwd~G~~s-~qslt 278 (994)
+++. ++.|++||+.+ +.+.++..|..+ ...+++.| .+||.++. .+.+|+.-... ...+.
T Consensus 225 ~~g~~dg~i~~wd~~~-~~~~~~~~h~~~-------------v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~ 290 (435)
T 4e54_B 225 VTGDNVGNVILLNMDG-KELWNLRMHKKK-------------VTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL 290 (435)
T ss_dssp EEECSSSBEEEEESSS-CBCCCSBCCSSC-------------EEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS
T ss_pred EEEeCCCcEeeeccCc-ceeEEEecccce-------------EEeeeecCCCceEEEEecCcceeeEEecccccccceEE
Confidence 7766 45799999864 444444444332 23467765 46666543 46788731110 00000
Q ss_pred CCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCC
Q 001935 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (994)
Q Consensus 279 p~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s 358 (994)
. ...+. ..+..+.+++.++ .+++++.||.|+|||+.+
T Consensus 291 -------~--------------------------~~~h~------~~v~~~~~spdg~----~l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 291 -------Y--------------------------SLPHR------HPVNAACFSPDGA----RLLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp -------B--------------------------CCBCS------SCEEECCBCTTSS----EEEEEESSSCEEEEESSS
T ss_pred -------E--------------------------eeecc------ccccceeECCCCC----eeEEEcCCCEEEEEECCC
Confidence 0 00000 0011122233333 245678999999999999
Q ss_pred CcEEEEeccCCCC------eEEEEECCCCCEEEEEE-----------cCCCeEEEEeCCCCcccCCCCCCccccCCcceE
Q 001935 359 RAIISQFKAHTSP------ISALCFDPSGTLLVTAS-----------VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (994)
Q Consensus 359 ~~~i~~~~aHtsp------IsaLaFSPdGtlLATAS-----------~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~ 421 (994)
+.....+..|... +..++|+|++.++++++ .+++.|+||++.. | ..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~-------g----------~~ 390 (435)
T 4e54_B 328 WDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS-------G----------KM 390 (435)
T ss_dssp SSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS-------C----------CE
T ss_pred CccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC-------C----------cE
Confidence 9888888777532 23456777777666664 3456799999853 3 46
Q ss_pred EEEEecccccccEEEE-EEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 422 LYKLHRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 422 l~~L~RG~t~a~I~sI-aFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
+.++..++ ...|.++ +|||||++||+|+ |++|+||++...
T Consensus 391 ~~~l~~~~-~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 391 MCQLYDPE-SSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp EEEECCSS-CCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred EEEEeCCC-CCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 77776554 4457776 7999999999886 789999998764
No 70
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=7.4e-19 Score=186.41 Aligned_cols=259 Identities=12% Similarity=0.075 Sum_probs=173.3
Q ss_pred eeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEEC
Q 001935 101 VSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF 180 (994)
Q Consensus 101 ls~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDl 180 (994)
+..|.++|.++++.|++ .+|++.+. +++|++||+
T Consensus 28 l~~h~~~v~~~~~s~~~-------------~~l~~~~~---------------------------------dg~i~vwd~ 61 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEG-------------DLLFSCSK---------------------------------DSSASVWYS 61 (369)
T ss_dssp EECCSSCEEEEEECTTS-------------CEEEEEES---------------------------------SSCEEEEET
T ss_pred EEEeeceEEEEEEcCCC-------------CEEEEEeC---------------------------------CCEEEEEeC
Confidence 66789999999999865 36665321 367999999
Q ss_pred CCCeEEEEEeC-CCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--
Q 001935 181 QSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP-- 254 (994)
Q Consensus 181 ktge~V~tL~f-~S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp-- 254 (994)
.+++.+.++.. ...|.++++++ ++|+++. ++.|++||+.+.+.+..+. +..+ ...+++.+
T Consensus 62 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~-------------v~~~~~~~~~ 127 (369)
T 3zwl_B 62 LNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVP-------------VKRVEFSPCG 127 (369)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSC-------------EEEEEECTTS
T ss_pred CCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCC-------------eEEEEEccCC
Confidence 99999999974 56899999987 4666654 5689999999999887776 3321 23466666
Q ss_pred cEEEEccC-------CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCC
Q 001935 255 RWLAYASN-------TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (994)
Q Consensus 255 RwLAyas~-------~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s 327 (994)
++|+.+.. .+.+|+...... . ..+.. ... .....+..+.. .....
T Consensus 128 ~~l~~~~~~~~~~~g~i~~~d~~~~~~--~-------------~~~~~-~~~--------~~~~~~~~~~~----~~~~~ 179 (369)
T 3zwl_B 128 NYFLAILDNVMKNPGSINIYEIERDSA--T-------------HELTK-VSE--------EPIHKIITHEG----LDAAT 179 (369)
T ss_dssp SEEEEEECCBTTBCCEEEEEEEEECTT--T-------------CCEEE-ECS--------SCSEEEECCTT----CCCEE
T ss_pred CEEEEecCCccCCCCEEEEEEecCCcc--c-------------eeecc-ccc--------ceeeeccCCcC----cccee
Confidence 66666543 355665311000 0 00000 000 00000000000 00011
Q ss_pred CccCCCccccccccccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccC
Q 001935 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS 406 (994)
Q Consensus 328 ~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s-~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~ 406 (994)
.+.+++..+ .++.+..+|.|++||+.+ ++.+..+..|..+|.+|+|+|+|++|++++.+|+ |+|||+..
T Consensus 180 ~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~~----- 249 (369)
T 3zwl_B 180 VAGWSTKGK----YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN-SFLVDVST----- 249 (369)
T ss_dssp EEEECGGGC----EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTT-----
T ss_pred EEEEcCCCC----EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce-EEEEECCC-----
Confidence 112223322 234677899999999999 7888999999999999999999999999999665 99999863
Q ss_pred CCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC--------------eEEEEecCCCCCCcccccc
Q 001935 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG--------------TCHVFVLSPFGGDSGFQTL 472 (994)
Q Consensus 407 ~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dG--------------TVhIw~I~~~gg~~~~~~H 472 (994)
+ ..+..+. ....|.+++|+|++++|++++.++ ++++|++........+..|
T Consensus 250 --~----------~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 314 (369)
T 3zwl_B 250 --L----------QVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH 314 (369)
T ss_dssp --C----------CEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC
T ss_pred --C----------ceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc
Confidence 2 3555554 345799999999999999999999 7888887665433333444
No 71
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=8.9e-19 Score=189.59 Aligned_cols=252 Identities=12% Similarity=0.111 Sum_probs=164.4
Q ss_pred cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEE
Q 001935 96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV 175 (994)
Q Consensus 96 ~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tV 175 (994)
++...+..|.++|.++.+.|+ +||..+ .+++|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~---------------~las~~---------------------------------~D~~i 36 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG---------------ILATGS---------------------------------TDRKI 36 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT---------------EEEEEE---------------------------------SSSCE
T ss_pred ccceeeccCCCceeeeccCCC---------------EEEEEc---------------------------------CCCEE
Confidence 355678889999999998742 556432 13689
Q ss_pred EEEECCCC--eEEEEEe---CCCcEEEEEecC--CeEEEEe-CCeEEEEECCC-------CceeEEEeecCCccccCCCc
Q 001935 176 RFYSFQSH--CYEHVLR---FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALT-------LENKFSVLTYPVPQLAGQGA 240 (994)
Q Consensus 176 rLWDlktg--e~V~tL~---f~S~V~sV~~S~--~iLAVgl-~~~I~IwDa~T-------le~l~tL~t~p~p~~~~~g~ 240 (994)
+|||++++ +.+.++. +...|.+|+|++ ++|+++. ++.|+|||+.+ .+.+.++..|..+
T Consensus 37 ~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~------- 109 (330)
T 2hes_X 37 KLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENE------- 109 (330)
T ss_dssp EEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----C-------
T ss_pred EEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCc-------
Confidence 99999875 5666773 456899999998 5777765 66899999853 3445555555442
Q ss_pred cccccCccceEEcc--cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccc
Q 001935 241 VGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKY 316 (994)
Q Consensus 241 ~~vnv~~gplAlgp--RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y 316 (994)
...++++| ++||.++. .+.+|+..... +. ...+ +++.++
T Consensus 110 ------V~~v~~sp~g~~las~s~D~~v~iwd~~~~~-~~--------------~~~~----------------~~~~~h 152 (330)
T 2hes_X 110 ------VKGVAWSNDGYYLATCSRDKSVWIWETDESG-EE--------------YECI----------------SVLQEH 152 (330)
T ss_dssp ------EEEEEECTTSCEEEEEETTSCEEEEECCTTC-CC--------------CEEE----------------EEECCC
T ss_pred ------EEEEEECCCCCEEEEEeCCCEEEEEeccCCC-CC--------------eEEE----------------EEeccC
Confidence 24577876 78887764 57788741100 00 0000 111111
Q ss_pred cccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC--cEEEEeccCCCCeEEEEECCC--CCEEEEEEcCCC
Q 001935 317 CQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFKAHTSPISALCFDPS--GTLLVTASVYGN 392 (994)
Q Consensus 317 ~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~--~~i~~~~aHtspIsaLaFSPd--GtlLATAS~dGt 392 (994)
... ...+.++|... .+++++.||+|+|||..++ +.+..+.+|..+|.+++|+|+ +.+|||++.||+
T Consensus 153 ~~~------v~~v~~~p~~~----~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~ 222 (330)
T 2hes_X 153 SQD------VKHVIWHPSEA----LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST 222 (330)
T ss_dssp SSC------EEEEEECSSSS----EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred CCc------eEEEEECCCCC----EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence 100 11112233222 3457889999999999876 678899999999999999999 789999999776
Q ss_pred eEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 393 ~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
|+||++.... ..+ ......+..+ .+.+...|++++|++++ +||+++.||+|+||++.
T Consensus 223 -v~iw~~~~~~---~~~------~~~~~~~~~~-~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 223 -VRVWKYMGDD---EDD------QQEWVCEAIL-PDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV 279 (330)
T ss_dssp -EEEEEEEEEC---TTS------CEEEEEEEEC-CSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEE
T ss_pred -EEEEEecCCC---ccc------cceeEEeeec-ccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcC
Confidence 9999985310 000 0011233333 33345679999999765 89999999999999975
No 72
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.84 E-value=4.8e-19 Score=197.85 Aligned_cols=241 Identities=14% Similarity=0.165 Sum_probs=173.2
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
.+|.+.|..+.|+ +..|++|..+| ++|||+. .+++...+..|.++|.++.+.+ .
T Consensus 170 ~~h~~~v~~l~~~---------~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~l~~~~---------------~ 224 (435)
T 1p22_A 170 TGHTGSVLCLQYD---------ERVIITGSSDSTVRVWDVN-TGEMLNTLIHHCEAVLHLRFNN---------------G 224 (435)
T ss_dssp CCCSSCEEEEECC---------SSEEEEEETTSCEEEEESS-SCCEEEEECCCCSCEEEEECCT---------------T
T ss_pred cCCCCcEEEEEEC---------CCEEEEEcCCCeEEEEECC-CCcEEEEEcCCCCcEEEEEEcC---------------C
Confidence 4577778777773 35777777766 9999995 5777788888999999998652 2
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEE---EEEe-CCCcEEEEEecCCeEEE
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYE---HVLR-FRSSVCMVRCSPRIVAV 207 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V---~tL~-f~S~V~sV~~S~~iLAV 207 (994)
+|++.+ .+++|++||+++++.+ ..+. +...|.++.++.+.|++
T Consensus 225 ~l~s~s---------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 271 (435)
T 1p22_A 225 MMVTCS---------------------------------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVS 271 (435)
T ss_dssp EEEEEE---------------------------------TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEE
T ss_pred EEEEee---------------------------------CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEE
Confidence 555432 1368999999988765 4443 45689999999888887
Q ss_pred Ee-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCc
Q 001935 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (994)
Q Consensus 208 gl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~st 286 (994)
+. ++.|++||+.+.+.+.++..+..+ .. .+++.+.
T Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~---------------v~-----~~~~~~~------------------------ 307 (435)
T 1p22_A 272 ASGDRTIKVWNTSTCEFVRTLNGHKRG---------------IA-----CLQYRDR------------------------ 307 (435)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSC---------------EE-----EEEEETT------------------------
T ss_pred EeCCCeEEEEECCcCcEEEEEcCCCCc---------------EE-----EEEeCCC------------------------
Confidence 66 568999999999988887755431 01 1122110
Q ss_pred CCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec
Q 001935 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK 366 (994)
Q Consensus 287 Sp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~ 366 (994)
.+++++.||.|+|||+.+++.+..+.
T Consensus 308 ------------------------------------------------------~l~~g~~dg~i~iwd~~~~~~~~~~~ 333 (435)
T 1p22_A 308 ------------------------------------------------------LVVSGSSDNTIRLWDIECGACLRVLE 333 (435)
T ss_dssp ------------------------------------------------------EEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ------------------------------------------------------EEEEEeCCCeEEEEECCCCCEEEEEe
Confidence 01234678999999999999999999
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 001935 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (994)
Q Consensus 367 aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (994)
+|..+|.+|+| +|.+|++++.+|+ |+|||+...... . .......+..+ .+ +...|.+++| |+++|
T Consensus 334 ~h~~~v~~~~~--~~~~l~sg~~dg~-i~vwd~~~~~~~---~-----~~~~~~~~~~~-~~-h~~~v~~l~~--~~~~l 398 (435)
T 1p22_A 334 GHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLVAALDP---R-----APAGTLCLRTL-VE-HSGRVFRLQF--DEFQI 398 (435)
T ss_dssp CCSSCEEEEEC--CSSEEEEEETTSC-EEEEEHHHHTST---T-----SCTTTTEEEEE-CC-CSSCCCCEEE--CSSCE
T ss_pred CCcCcEEEEEe--cCCEEEEEeCCCc-EEEEECCCCCCc---c-----ccccchheeec-cC-CCCCeEEEEe--CCCEE
Confidence 99999999999 7899999999776 999998531000 0 00011255555 34 3457999999 88999
Q ss_pred EEEeCCCeEEEEecCCCC
Q 001935 447 AIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 447 AsgS~dGTVhIw~I~~~g 464 (994)
++++.||+|+||++....
T Consensus 399 ~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 399 VSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EECCSSSEEEEEC-----
T ss_pred EEEeCCCEEEEEECCCCC
Confidence 999999999999997643
No 73
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.4e-19 Score=222.13 Aligned_cols=110 Identities=16% Similarity=0.121 Sum_probs=86.8
Q ss_pred ccCCCccccccccccccCCCCeEEEEECCCC---------------------------------------------cEEE
Q 001935 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTR---------------------------------------------AIIS 363 (994)
Q Consensus 329 ~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~---------------------------------------------~~i~ 363 (994)
+.++++++. +++++.||+|+|||+.++ +++.
T Consensus 494 vafspdg~~----LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 569 (902)
T 2oaj_A 494 ISFAAETLE----LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPST 569 (902)
T ss_dssp EEEETTTTE----EEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEE
T ss_pred EEecCCCCe----EEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeE
Confidence 445555553 457889999999999866 2478
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEE--EEe---cccccccEEEEE
Q 001935 364 QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY--KLH---RGITSATIQDIC 438 (994)
Q Consensus 364 ~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~--~L~---RG~t~a~I~sIa 438 (994)
.+.+|..+|++|+||||| +||+|+.+|+ |+|||+.. + ..++ .++ .| +...|++|+
T Consensus 570 ~l~~h~~~V~svafSpdG-~lAsgs~D~t-v~lwd~~~-------~----------~~~~~~~~~~~~~g-h~~~V~sv~ 629 (902)
T 2oaj_A 570 AVHANKGKTSAINNSNIG-FVGIAYAAGS-LMLIDRRG-------P----------AIIYMENIREISGA-QSACVTCIE 629 (902)
T ss_dssp EECCCSCSEEEEEECBTS-EEEEEETTSE-EEEEETTT-------T----------EEEEEEEGGGTCSS-CCCCEEEEE
T ss_pred EEEcCCCcEEEEEecCCc-EEEEEeCCCc-EEEEECCC-------C----------eEEEEeehhHhccc-cccceEEEE
Confidence 889999999999999999 9999999665 99999853 1 2333 221 14 346799999
Q ss_pred Ec-----cCC---CEEEEEeCCCeEEEEecCC
Q 001935 439 FS-----HYS---QWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 439 FS-----pDg---~~LAsgS~dGTVhIw~I~~ 462 (994)
|| ||| ++|++++.||||++|++.|
T Consensus 630 Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p 661 (902)
T 2oaj_A 630 FVIMEYGDDGYSSILMVCGTDMGEVITYKILP 661 (902)
T ss_dssp EEEEECTTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred EEEEecCCCCCcceEEEEEecCCcEEEEEEec
Confidence 99 885 9999999999999999943
No 74
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.84 E-value=4e-19 Score=195.64 Aligned_cols=235 Identities=12% Similarity=0.074 Sum_probs=155.0
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceEe----eeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNEL----VSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 56 kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~el----ls~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
...|..+.|.. ++++++.+.++.++|||++. ++...+ +..|.++|.+|+|.|++ .
T Consensus 82 ~~~v~~~~~s~-------d~~l~~~s~dg~v~lWd~~~-~~~~~~~~~~~~~H~~~V~~v~~spdg-------------~ 140 (344)
T 4gqb_B 82 EAGVADLTWVG-------ERGILVASDSGAVELWELDE-NETLIVSKFCKYEHDDIVSTVSVLSSG-------------T 140 (344)
T ss_dssp SSCEEEEEEET-------TTEEEEEETTSEEEEEEECT-TSSCEEEEEEEECCSSCEEEEEECTTS-------------S
T ss_pred CCCEEEEEEeC-------CCeEEEEECCCEEEEEeccC-CCceeEeeccccCCCCCEEEEEECCCC-------------C
Confidence 34577777752 44555444444599999964 443322 34689999999999875 3
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC---CeEEE
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP---RIVAV 207 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~S~V~sV~~S~---~iLAV 207 (994)
+|+..+ .+++|++||+++++++.++.. ...|.+++|++ .+|++
T Consensus 141 ~l~sgs---------------------------------~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s 187 (344)
T 4gqb_B 141 QAVSGS---------------------------------KDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLS 187 (344)
T ss_dssp EEEEEE---------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEE
T ss_pred EEEEEe---------------------------------CCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceee
Confidence 566432 136899999999999999975 46999999987 35665
Q ss_pred Ee-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc---cEEEEccC--CeeeccCCccCCCcCCCCC
Q 001935 208 GL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASN--TLLLSNSGRLSPQNLTPSG 281 (994)
Q Consensus 208 gl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp---RwLAyas~--~~~iwd~G~~s~qsltp~~ 281 (994)
+. ++.|++||+.+.+....+...... .....+++.+ ++||.++. .+.+|+...
T Consensus 188 ~s~D~~v~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~---------- 246 (344)
T 4gqb_B 188 CSEDNRILLWDTRCPKPASQIGCSAPG-----------YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS---------- 246 (344)
T ss_dssp EETTSCEEEEETTSSSCEEECC----C-----------CCEEEEEECSSCTTEEEEEETTSEEEEEESCC----------
T ss_pred eccccccccccccccceeeeeecceee-----------ccceeeeecCCCCcceEEeccCCcEEEEECCC----------
Confidence 54 678999999999887766532110 0123466655 67776653 467887311
Q ss_pred CCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE
Q 001935 282 VSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI 361 (994)
Q Consensus 282 ~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~ 361 (994)
+..+ +++..+... ...+.+++.+. ..+++++.||.|+|||+.++++
T Consensus 247 ---------~~~~----------------~~~~~h~~~------v~~v~fsp~g~---~~lasgs~D~~i~vwd~~~~~~ 292 (344)
T 4gqb_B 247 ---------TSCV----------------LSSAVHSQC------VTGLVFSPHSV---PFLASLSEDCSLAVLDSSLSEL 292 (344)
T ss_dssp -----------CC----------------EEEECCSSC------EEEEEECSSSS---CCEEEEETTSCEEEECTTCCEE
T ss_pred ---------CcEE----------------EEEcCCCCC------EEEEEEccCCC---eEEEEEeCCCeEEEEECCCCcE
Confidence 0000 111111100 01112222221 1245778999999999998875
Q ss_pred EEEeccCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEeCCC
Q 001935 362 ISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 362 i~~~~aHtspIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p 401 (994)
+ .+.+|+.+|.+|+|+|+|. +|||+|.||+ |++|++..
T Consensus 293 ~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~-v~~w~v~~ 331 (344)
T 4gqb_B 293 F-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQ-VVHHVVPT 331 (344)
T ss_dssp E-EECCCSSCEEEEEECSSSTTEEEEEETTSC-EEEEECCC
T ss_pred E-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCe-EEEEECCC
Confidence 4 6789999999999999986 7889999776 89999853
No 75
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.84 E-value=2e-18 Score=182.34 Aligned_cols=246 Identities=18% Similarity=0.230 Sum_probs=162.7
Q ss_pred CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCE
Q 001935 95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA 174 (994)
Q Consensus 95 g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~t 174 (994)
..++.+|.+|.++|.+|++.|+. ..+||..+ .+++
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~------------~~~l~S~s---------------------------------~D~~ 62 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQF------------PDMILSAS---------------------------------RDKT 62 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTC------------TTEEEEEE---------------------------------TTSC
T ss_pred eEEEEEECCccCCEEEEEEeCCC------------CCEEEEEc---------------------------------CCCe
Confidence 34566788999999999999863 13666432 1478
Q ss_pred EEEEECCCCe-----EEEEEeC-CCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCcccccc
Q 001935 175 VRFYSFQSHC-----YEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINV 245 (994)
Q Consensus 175 VrLWDlktge-----~V~tL~f-~S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv 245 (994)
|+|||+.+++ ++++++. ...|.++++++ ++|+++. ++.|++|+............+...
T Consensus 63 i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~------------ 130 (340)
T 4aow_A 63 IIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD------------ 130 (340)
T ss_dssp EEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC------------
T ss_pred EEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc------------
Confidence 9999997654 4566665 46899999987 5666654 668999999887766655543221
Q ss_pred CccceEEcc--cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeecccccccc
Q 001935 246 GYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELL 321 (994)
Q Consensus 246 ~~gplAlgp--RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~ 321 (994)
...+.+.+ ++|+.++. .+.+|+........... .+....+. +.
T Consensus 131 -~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~---------------------------~~~~~~v~--~~--- 177 (340)
T 4aow_A 131 -VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---------------------------ESHSEWVS--CV--- 177 (340)
T ss_dssp -EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS---------------------------SSCSSCEE--EE---
T ss_pred -eeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe---------------------------ccccCccc--ce---
Confidence 11233333 55555442 45677631110000000 00000000 00
Q ss_pred CCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCC
Q 001935 322 PDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 322 p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (994)
.++.+... ...++++.|+.|++||+.+++.+..+.+|..+|.+|+|+|+|++||+++.||+ |+|||+..
T Consensus 178 ------~~~~~~~~----~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~ 246 (340)
T 4aow_A 178 ------RFSPNSSN----PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNE 246 (340)
T ss_dssp ------EECSCSSS----CEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTT
T ss_pred ------EEccCCCC----cEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEecc
Confidence 00000000 12346778999999999999999999999999999999999999999999765 99999853
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 402 ~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
+ ..++.+.. ...|.+++|+|++.+|+ ++.|++|+||++..
T Consensus 247 -------~----------~~~~~~~~---~~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~ 286 (340)
T 4aow_A 247 -------G----------KHLYTLDG---GDIINALCFSPNRYWLC-AATGPSIKIWDLEG 286 (340)
T ss_dssp -------T----------EEEEEEEC---SSCEEEEEECSSSSEEE-EEETTEEEEEETTT
T ss_pred -------C----------ceeeeecC---CceEEeeecCCCCceee-ccCCCEEEEEECCC
Confidence 2 46666643 24699999999987665 55689999999864
No 76
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.83 E-value=1.1e-18 Score=199.58 Aligned_cols=242 Identities=12% Similarity=0.095 Sum_probs=183.0
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCC----cceEeeeeccCC-EEEEEEec--CCCCCCCCC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDAS----NFNELVSKRDGP-VSFLQMQP--FPVKDDGCE 124 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g----~v~ells~hdGp-V~~v~~lP--~p~~s~~~D 124 (994)
...+++.|..+.|.. +++.|++|.++.++|||++ .+ .....+..|.++ |.++++.| ++
T Consensus 14 ~~~~~~~v~~~~~sp-------dg~~l~~~~~~~v~v~~~~-~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~------- 78 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDP-------TTNAIAYPCGKSAFVRCLD-DGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS------- 78 (615)
T ss_dssp CCCCTTCCCCCEEET-------TTTEEEEEETTEEEEEECC-SSCCSSCSEEEECTTTTSCEEEEEECSSTTC-------
T ss_pred CCCccCceeEEEECC-------CCCEEEEecCCeEEEEECC-CCCCccccceEEecCCCceEEEEEECcCCCC-------
Confidence 356788898888874 5678888888789999996 45 677788889999 99999998 65
Q ss_pred CccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCC--------eEEEEEe-CCCcE
Q 001935 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--------CYEHVLR-FRSSV 195 (994)
Q Consensus 125 ~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktg--------e~V~tL~-f~S~V 195 (994)
.+||+.+ .+++|++||+.++ +.+.++. +...|
T Consensus 79 ------~~l~s~~---------------------------------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 119 (615)
T 1pgu_A 79 ------QYLCSGD---------------------------------ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPI 119 (615)
T ss_dssp ------CEEEEEE---------------------------------TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCE
T ss_pred ------CEEEEec---------------------------------CCCEEEEEeCCCCcccccccccccchhhcccccE
Confidence 3666532 1368999999855 6677776 45799
Q ss_pred EEEEecC--CeEEEEeCC-----eEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeecc
Q 001935 196 CMVRCSP--RIVAVGLAT-----QIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSN 268 (994)
Q Consensus 196 ~sV~~S~--~iLAVgl~~-----~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd 268 (994)
.++++++ ++|+++..+ .|++|| +.+.+..+..|..+ . ..++|.+
T Consensus 120 ~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~-------------v-------~~~~~~~------- 170 (615)
T 1pgu_A 120 SDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR-------------I-------NACHLKQ------- 170 (615)
T ss_dssp EEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC-------------E-------EEEEECS-------
T ss_pred EEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc-------------E-------EEEEECC-------
Confidence 9999998 577776654 688888 44455544433221 0 1122221
Q ss_pred CCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCC
Q 001935 269 SGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNA 348 (994)
Q Consensus 269 ~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~d 348 (994)
++.. .+++++.|
T Consensus 171 --------------------~~~~------------------------------------------------~l~~~~~d 182 (615)
T 1pgu_A 171 --------------------SRPM------------------------------------------------RSMTVGDD 182 (615)
T ss_dssp --------------------SSSC------------------------------------------------EEEEEETT
T ss_pred --------------------CCCc------------------------------------------------EEEEEeCC
Confidence 1110 11245678
Q ss_pred CeEEEEECCCCcEEEEeccCCC---CeEEEEECCC-CCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 001935 349 GIVVVKDFVTRAIISQFKAHTS---PISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHts---pIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~ 424 (994)
|.|+|||+.+++.+..+.+|.. +|.+|+|+|+ |++|++++.+|. |+||++.. + ..+..
T Consensus 183 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~-------~----------~~~~~ 244 (615)
T 1pgu_A 183 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKS-------G----------EFLKY 244 (615)
T ss_dssp TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTT-------C----------CEEEE
T ss_pred CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCC-------C----------CEeEE
Confidence 9999999999999999999999 9999999999 999999999776 99999853 3 45666
Q ss_pred Eec---ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 425 LHR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 425 L~R---G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
+.. + +...|.+++|+ |+++|++++.||+|+||++....
T Consensus 245 ~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~ 285 (615)
T 1pgu_A 245 IEDDQEP-VQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK 285 (615)
T ss_dssp CCBTTBC-CCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE
T ss_pred ecccccc-cCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCc
Confidence 633 4 45679999999 99999999999999999997643
No 77
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.83 E-value=5.6e-19 Score=185.41 Aligned_cols=263 Identities=12% Similarity=0.103 Sum_probs=173.8
Q ss_pred CCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCC
Q 001935 73 VFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (994)
Q Consensus 73 ~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~ 151 (994)
++++.|+++...+ +.+|+..........+ .|.++|.++++.|++ .+|++. +
T Consensus 19 ~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~-------------~~l~~~-~------------- 70 (337)
T 1gxr_A 19 ADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPT-------------RHVYTG-G------------- 70 (337)
T ss_dssp SSSCEEECCCCTTSSSSTTCCSEEEEEEEE-CCSSCCCEEEECSSS-------------SEEEEE-C-------------
T ss_pred CCCCEEEeecCCCcEeccccCCccccceec-cCCCceEEEEEecCC-------------cEEEEc-C-------------
Confidence 4677887777654 6666654333333333 588999999998765 355642 1
Q ss_pred CccccccCCcCCCCCCCCCCCCEEEEEECCCCeE---EEEEe---CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCc
Q 001935 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY---EHVLR---FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE 222 (994)
Q Consensus 152 ~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~---V~tL~---f~S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle 222 (994)
+++|++||+.+++. +..+. +...|.++++++ ++|+++. ++.|++||+.+.+
T Consensus 71 --------------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~ 130 (337)
T 1gxr_A 71 --------------------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130 (337)
T ss_dssp --------------------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred --------------------CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC
Confidence 25899999987753 34443 456899999997 4666655 5689999999877
Q ss_pred --eeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEE
Q 001935 223 --NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVAR 296 (994)
Q Consensus 223 --~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~ 296 (994)
....+..+..+ ...+++.+ ++|+.++. .+.+|+... +..+.
T Consensus 131 ~~~~~~~~~~~~~-------------i~~~~~~~~~~~l~~~~~dg~v~~~d~~~-------------------~~~~~- 177 (337)
T 1gxr_A 131 PRIKAELTSSAPA-------------CYALAISPDSKVCFSCCSDGNIAVWDLHN-------------------QTLVR- 177 (337)
T ss_dssp -EEEEEEECSSSC-------------EEEEEECTTSSEEEEEETTSCEEEEETTT-------------------TEEEE-
T ss_pred cceeeecccCCCc-------------eEEEEECCCCCEEEEEeCCCcEEEEeCCC-------------------Cceee-
Confidence 34444433321 23466665 66766653 466776311 01100
Q ss_pred eehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEE
Q 001935 297 YAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALC 376 (994)
Q Consensus 297 ~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLa 376 (994)
.+..+. .....+.+++..+ .++.++.+|.|++||+.+++.+..+. |..+|.+++
T Consensus 178 ---------------~~~~~~------~~i~~~~~~~~~~----~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~ 231 (337)
T 1gxr_A 178 ---------------QFQGHT------DGASCIDISNDGT----KLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLG 231 (337)
T ss_dssp ---------------EECCCS------SCEEEEEECTTSS----EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEE
T ss_pred ---------------eeeccc------CceEEEEECCCCC----EEEEEecCCcEEEEECCCCceEeeec-CCCceEEEE
Confidence 000000 0000111222222 23466789999999999998877764 788999999
Q ss_pred ECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEE
Q 001935 377 FDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCH 456 (994)
Q Consensus 377 FSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVh 456 (994)
|+|+|++|++++.+|. |++|++.. + .+..+. + +...|.+++|+||+++|++++.||+|+
T Consensus 232 ~s~~~~~l~~~~~~~~-i~~~~~~~-------~-----------~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~dg~i~ 290 (337)
T 1gxr_A 232 YCPTGEWLAVGMESSN-VEVLHVNK-------P-----------DKYQLH-L-HESCVLSLKFAYCGKWFVSTGKDNLLN 290 (337)
T ss_dssp ECTTSSEEEEEETTSC-EEEEETTS-------S-----------CEEEEC-C-CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ECCCCCEEEEEcCCCc-EEEEECCC-------C-----------CeEEEc-C-CccceeEEEECCCCCEEEEecCCCcEE
Confidence 9999999999999776 99999853 1 223442 3 346799999999999999999999999
Q ss_pred EEecCCC
Q 001935 457 VFVLSPF 463 (994)
Q Consensus 457 Iw~I~~~ 463 (994)
||++...
T Consensus 291 ~~~~~~~ 297 (337)
T 1gxr_A 291 AWRTPYG 297 (337)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 9998753
No 78
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.83 E-value=4.8e-19 Score=194.63 Aligned_cols=236 Identities=12% Similarity=0.059 Sum_probs=153.9
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEccCCCcceE----eeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNE----LVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 54 ~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G~qVWDv~~~g~v~e----lls~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
.+.+.|..+.|.. ++++|+.+.++.++|||+.. ++... ....|.++|.+|++.|++
T Consensus 92 ~~~~~V~~~~~s~-------d~~~l~~s~dg~v~lWd~~~-~~~~~~~~~~~~~h~~~V~~v~~spdg------------ 151 (357)
T 4g56_B 92 QTEAGVTDVAWVS-------EKGILVASDSGAVELWEILE-KESLLVNKFAKYEHDDIVKTLSVFSDG------------ 151 (357)
T ss_dssp ECSSCEEEEEEET-------TTEEEEEETTSCEEEC---------CCCCEEECCCSSCEEEEEECSSS------------
T ss_pred CCCCCEEEEEEcC-------CCCEEEEECCCEEEEeeccc-cceeEEEeeccCCCCCCEEEEEECCCC------------
Confidence 4667788888863 46777777767799999964 33222 233688999999999875
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC---CeE
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP---RIV 205 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~---~iL 205 (994)
.+|+..+ .+++|++||+++++++..++.+ ..|.+|+|++ .++
T Consensus 152 -~~l~sgs---------------------------------~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 152 -TQAVSGG---------------------------------KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp -SEEEEEE---------------------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred -CEEEEEe---------------------------------CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence 3556432 1368999999999999999754 6899999976 355
Q ss_pred EE-EeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc---cEEEEccC--CeeeccCCccCCCcCCC
Q 001935 206 AV-GLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASN--TLLLSNSGRLSPQNLTP 279 (994)
Q Consensus 206 AV-gl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp---RwLAyas~--~~~iwd~G~~s~qsltp 279 (994)
++ +.++.|++||+.+.+....+...... .....++++| ++||.++. .+.+|+.... +
T Consensus 198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~-----------~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~--~---- 260 (357)
T 4g56_B 198 LSCGEDGRILLWDTRKPKPATRIDFCASD-----------TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP--D---- 260 (357)
T ss_dssp EEEETTSCEEECCTTSSSCBCBCCCTTCC-----------SCEEEEEECTTSTTEEEEEESSSCEEEEESSCG--G----
T ss_pred eeeccCCceEEEECCCCceeeeeeecccc-----------ccccchhhhhcccceEEEeecccceeEEECCCC--c----
Confidence 55 45678999999988766544322110 0123467765 57776543 4677873110 0
Q ss_pred CCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 001935 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (994)
Q Consensus 280 ~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~ 359 (994)
.+ +++..+.. ....+.+++... ..+++++.||+|+|||+.++
T Consensus 261 -------------~~----------------~~~~~~~~------~v~~l~~sp~~~---~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 261 -------------SA----------------QTSAVHSQ------NITGLAYSYHSS---PFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp -------------GC----------------EEECCCSS------CEEEEEECSSSS---CCEEEEETTSCEEEECTTSC
T ss_pred -------------Ee----------------EEEeccce------eEEEEEEcCCCC---CEEEEEeCCCEEEEEECCCC
Confidence 00 01111100 001112222211 12456789999999999998
Q ss_pred cEEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCeEEEEeCC
Q 001935 360 AIISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 360 ~~i~~~~aHtspIsaLaFSP-dGtlLATAS~dGt~IrVwdi~ 400 (994)
+++.. .+|..+|.+|+|+| ||++|||+|.||+ |+||++.
T Consensus 303 ~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~-v~iW~~~ 342 (357)
T 4g56_B 303 EVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHK-VLHHHLP 342 (357)
T ss_dssp EEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSC-EEEEECC
T ss_pred cEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCe-EEEEECC
Confidence 87754 58999999999999 8999999999776 9999995
No 79
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.82 E-value=4.6e-18 Score=213.35 Aligned_cols=324 Identities=14% Similarity=0.117 Sum_probs=202.5
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
.+|.+.|..+.|.. ++++|++|..+| ++|||+. ++.+...+..|.++|.++.+.|+. ...
T Consensus 654 ~~h~~~v~~~~~s~-------~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~ 714 (1249)
T 3sfz_A 654 KAHEDEVLCCAFSS-------DDSYIATCSADKKVKIWDSA-TGKLVHTYDEHSEQVNCCHFTNKS-----------NHL 714 (1249)
T ss_dssp CCCSSCEEEEEECT-------TSSEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECSSS-----------SCC
T ss_pred ccCCCCEEEEEEec-------CCCEEEEEeCCCeEEEEECC-CCceEEEEcCCCCcEEEEEEecCC-----------Cce
Confidence 46788888888863 556788887766 9999995 577888888999999999999753 112
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEEEE
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVG 208 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~S~V~sV~~S~--~iLAVg 208 (994)
+++..+ .+++|++||+++++++.++.. ...|.++++++ ++|+++
T Consensus 715 ~l~sg~---------------------------------~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~ 761 (1249)
T 3sfz_A 715 LLATGS---------------------------------NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASC 761 (1249)
T ss_dssp EEEEEE---------------------------------TTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred EEEEEe---------------------------------CCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEE
Confidence 444321 136899999999999999865 46899999988 466665
Q ss_pred e-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccC-CeeeccCCccCCCcCCCCCCCC
Q 001935 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN-TLLLSNSGRLSPQNLTPSGVSP 284 (994)
Q Consensus 209 l-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~-~~~iwd~G~~s~qsltp~~~S~ 284 (994)
. ++.|++||+.+.+...++......................+++++ ++|+.++. .+.+|+...
T Consensus 762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~------------- 828 (1249)
T 3sfz_A 762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHT------------- 828 (1249)
T ss_dssp ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTT-------------
T ss_pred ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecC-------------
Confidence 5 568999999998877776532110000000000000123345555 45554443 345665210
Q ss_pred CcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE
Q 001935 285 STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ 364 (994)
Q Consensus 285 stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~ 364 (994)
+..+.... ..+ ........+++... .++.+..+|.|++||+.++..+..
T Consensus 829 ------~~~~~~~~---------------~~~------~~~v~~~~~sp~~~----~l~~~~~dg~v~vwd~~~~~~~~~ 877 (1249)
T 3sfz_A 829 ------SGLLAEIH---------------TGH------HSTIQYCDFSPYDH----LAVIALSQYCVELWNIDSRLKVAD 877 (1249)
T ss_dssp ------CCEEEEEE---------------CSS------SSCCCEEEECSSTT----EEEEECSSSCEEEEETTTTEEEEE
T ss_pred ------CCceeEEc---------------CCC------CCceEEEEEcCCCC----EEEEEeCCCeEEEEEcCCCceeee
Confidence 00000000 000 00011112223222 234677899999999999999999
Q ss_pred eccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCC-c--ccc-----------CCcceEEEEEecc--
Q 001935 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH-K--YDW-----------NSSHVHLYKLHRG-- 428 (994)
Q Consensus 365 ~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~-~--~~~-----------~~s~~~l~~L~RG-- 428 (994)
+.+|..+|.+++|+|+|++|+|++.+|+ |++|++............ . ... ......+.....+
T Consensus 878 ~~~h~~~v~~v~~spdg~~l~s~s~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1249)
T 3sfz_A 878 CRGHLSWVHGVMFSPDGSSFLTASDDQT-IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 956 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE
T ss_pred cCCCccceEEEEECCCCCEEEEEeCCCe-EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE
Confidence 9999999999999999999999999776 999997421000000000 0 000 0000000000000
Q ss_pred --cccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccccccc
Q 001935 429 --ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (994)
Q Consensus 429 --~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~ 473 (994)
.....|.+++|+||+++|++++.+|+|+||++........+..|.
T Consensus 957 ~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~ 1003 (1249)
T 3sfz_A 957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK 1003 (1249)
T ss_dssp EEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS
T ss_pred EEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC
Confidence 123468999999999999999999999999998765544555554
No 80
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.82 E-value=9.9e-18 Score=182.12 Aligned_cols=271 Identities=15% Similarity=0.102 Sum_probs=180.9
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCc
Q 001935 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (994)
Q Consensus 75 ~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~ 153 (994)
+.++++|..++ ++|||+. .+++...+..|. .+.++++.|++ ..|++...
T Consensus 2 ~~l~vs~~~d~~v~v~d~~-~~~~~~~~~~~~-~~~~~~~s~dg-------------~~l~~~~~--------------- 51 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVT-SNKVTATIPVGS-NPMGAVISPDG-------------TKVYVANA--------------- 51 (391)
T ss_dssp EEEEEEETTTTEEEEEETT-TTEEEEEEECSS-SEEEEEECTTS-------------SEEEEEEG---------------
T ss_pred CEEEEEcCCCCEEEEEECC-CCeEEEEeecCC-CcceEEECCCC-------------CEEEEECC---------------
Confidence 35677776655 9999995 567777776654 58999998875 34444321
Q ss_pred cccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEee
Q 001935 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 154 ~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVgl--~~~I~IwDa~Tle~l~tL~t 229 (994)
.+++|++||+++++.+..+..+..|.++++++ +.|+++. ++.|++||+.+.+.+..+..
T Consensus 52 -----------------~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~ 114 (391)
T 1l0q_A 52 -----------------HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT 114 (391)
T ss_dssp -----------------GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred -----------------CCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC
Confidence 13689999999999999999888999999987 4565544 36899999999887776654
Q ss_pred cCCccccCCCccccccCccceEEcc--cEEEEcc---CCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhh
Q 001935 230 YPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS---NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ 304 (994)
Q Consensus 230 ~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas---~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~ 304 (994)
+.. ...+++++ ++|++++ ..+.+|+... +.++..+..
T Consensus 115 ~~~--------------~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-------------------~~~~~~~~~----- 156 (391)
T 1l0q_A 115 GKS--------------PLGLALSPDGKKLYVTNNGDKTVSVINTVT-------------------KAVINTVSV----- 156 (391)
T ss_dssp SSS--------------EEEEEECTTSSEEEEEETTTTEEEEEETTT-------------------TEEEEEEEC-----
T ss_pred CCC--------------cceEEECCCCCEEEEEeCCCCEEEEEECCC-------------------CcEEEEEec-----
Confidence 322 13467766 5564433 2355665310 111100000
Q ss_pred hhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEE
Q 001935 305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLL 384 (994)
Q Consensus 305 la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlL 384 (994)
+ .....+.++++.+. ..+.+..+|.|++||+.+++.+..+.. ...+.+++|+|+|++|
T Consensus 157 ---~---------------~~~~~~~~~~dg~~---l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l 214 (391)
T 1l0q_A 157 ---G---------------RSPKGIAVTPDGTK---VYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKA 214 (391)
T ss_dssp ---C---------------SSEEEEEECTTSSE---EEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEE
T ss_pred ---C---------------CCcceEEECCCCCE---EEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEE
Confidence 0 00001112222221 123456789999999999988877764 4678999999999999
Q ss_pred EEEEc--CCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE-EEEeCCCeEEEEecC
Q 001935 385 VTASV--YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI-AIVSSKGTCHVFVLS 461 (994)
Q Consensus 385 ATAS~--dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~L-AsgS~dGTVhIw~I~ 461 (994)
++++. .+..|++||+.. + ..+..+..+ ..+.+++|+||+++| ++++.+++|+||++.
T Consensus 215 ~~~~~~~~~~~v~~~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 215 YVTNVDKYFNTVSMIDTGT-------N----------KITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp EEEEECSSCCEEEEEETTT-------T----------EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEecCcCCCcEEEEECCC-------C----------eEEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 99884 355699999853 2 355555432 247899999999988 566889999999998
Q ss_pred CCCCCcccccc
Q 001935 462 PFGGDSGFQTL 472 (994)
Q Consensus 462 ~~gg~~~~~~H 472 (994)
.......+..|
T Consensus 275 ~~~~~~~~~~~ 285 (391)
T 1l0q_A 275 TNTITATMAVG 285 (391)
T ss_dssp TTEEEEEEECS
T ss_pred CCcEEEEEECC
Confidence 75433333333
No 81
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.82 E-value=2.2e-18 Score=193.26 Aligned_cols=239 Identities=13% Similarity=0.158 Sum_probs=164.0
Q ss_pred CeEEEEEecCc-EEEEEccCC---------CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCC
Q 001935 75 KQVLLLGYQNG-FQVLDVEDA---------SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTL 144 (994)
Q Consensus 75 ~~vL~lGy~~G-~qVWDv~~~---------g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~ 144 (994)
+.+|++|..+| ++|||+... ......+..|.+.|.++.+.|+.. .+|++.+
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~------------~~l~s~~------- 201 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN------------GYLLSAS------- 201 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST------------TEEEEEC-------
T ss_pred CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC------------CeEEEEe-------
Confidence 57888888776 999999642 344566778889999999987641 1555421
Q ss_pred CCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeE-------EEEEe-CCCcEEEEEecC---CeEEEEe-CCe
Q 001935 145 APGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-------EHVLR-FRSSVCMVRCSP---RIVAVGL-ATQ 212 (994)
Q Consensus 145 ~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~-------V~tL~-f~S~V~sV~~S~---~iLAVgl-~~~ 212 (994)
.+++|++||+.++.. ...+. +...|.+|++++ .+|+++. ++.
T Consensus 202 --------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~ 255 (430)
T 2xyi_A 202 --------------------------DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255 (430)
T ss_dssp --------------------------TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred --------------------------CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe
Confidence 136899999987422 23443 446899999987 4676654 678
Q ss_pred EEEEECCCC---ceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCC
Q 001935 213 IYCFDALTL---ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPG 289 (994)
Q Consensus 213 I~IwDa~Tl---e~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~ 289 (994)
|++||+.+. +.+..+..|..+ ++.|+|.. .
T Consensus 256 i~i~d~~~~~~~~~~~~~~~~~~~--------------------v~~i~~~p---------------------------~ 288 (430)
T 2xyi_A 256 LMIWDTRNNNTSKPSHTVDAHTAE--------------------VNCLSFNP---------------------------Y 288 (430)
T ss_dssp EEEEETTCSCSSSCSEEEECCSSC--------------------EEEEEECS---------------------------S
T ss_pred EEEEECCCCCCCcceeEeecCCCC--------------------eEEEEeCC---------------------------C
Confidence 999999976 344444333221 01122221 1
Q ss_pred CCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCC-CcEEEEeccC
Q 001935 290 GSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAH 368 (994)
Q Consensus 290 ~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s-~~~i~~~~aH 368 (994)
+..+ +++++.||.|+|||+.+ +..+..+.+|
T Consensus 289 ~~~~------------------------------------------------l~tg~~dg~v~vwd~~~~~~~~~~~~~h 320 (430)
T 2xyi_A 289 SEFI------------------------------------------------LATGSADKTVALWDLRNLKLKLHSFESH 320 (430)
T ss_dssp CTTE------------------------------------------------EEEEETTSEEEEEETTCTTSCSEEEECC
T ss_pred CCCE------------------------------------------------EEEEeCCCeEEEEeCCCCCCCeEEeecC
Confidence 1111 22456799999999998 5678899999
Q ss_pred CCCeEEEEECCCCC-EEEEEEcCCCeEEEEeCCCCcccCCCCCCcc---ccCCcceEEEEEecccccccEEEEEEccCCC
Q 001935 369 TSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKY---DWNSSHVHLYKLHRGITSATIQDICFSHYSQ 444 (994)
Q Consensus 369 tspIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~~~~~~sG~~~~---~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~ 444 (994)
..+|.+|+|+|+|. +||+++.+|+ |+||++... +.... .-......++.+ .| +...|.+++|+|+++
T Consensus 321 ~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~p~~~ 391 (430)
T 2xyi_A 321 KDEIFQVQWSPHNETILASSGTDRR-LHVWDLSKI------GEEQSTEDAEDGPPELLFIH-GG-HTAKISDFSWNPNEP 391 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGGT------TCCCCHHHHHHCCTTEEEEC-CC-CSSCEEEEEECSSST
T ss_pred CCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCCC------ccccCccccccCCcceEEEc-CC-CCCCceEEEECCCCC
Confidence 99999999999994 7999999776 999999641 10000 000001344444 44 345799999999999
Q ss_pred -EEEEEeCCCeEEEEecCC
Q 001935 445 -WIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 445 -~LAsgS~dGTVhIw~I~~ 462 (994)
+|++++.||+|+||++..
T Consensus 392 ~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 392 WIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp TEEEEEETTSEEEEEEECH
T ss_pred CEEEEEECCCCEEEeEccc
Confidence 899999999999999864
No 82
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.82 E-value=1e-18 Score=192.56 Aligned_cols=227 Identities=14% Similarity=0.119 Sum_probs=161.4
Q ss_pred EEEEEecCc-EEEEEccCCCc---ceEeeeeccCCEEEEEEec-CCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCC
Q 001935 77 VLLLGYQNG-FQVLDVEDASN---FNELVSKRDGPVSFLQMQP-FPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRS 151 (994)
Q Consensus 77 vL~lGy~~G-~qVWDv~~~g~---v~ells~hdGpV~~v~~lP-~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~ 151 (994)
+++.|..+| ++|||++..+. ....+..|.++|.++++.| ++ .+||+.+
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~-------------~~l~s~s-------------- 101 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND-------------NVIASGS-------------- 101 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT-------------TEEEEEE--------------
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC-------------CEEEEEe--------------
Confidence 344455555 99999965543 2345678999999999998 43 3666532
Q ss_pred CccccccCCcCCCCCCCCCCCCEEEEEECCCC-------eEEEEEeC-CCcEEEEEecC---CeEEEEe-CCeEEEEECC
Q 001935 152 HLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-------CYEHVLRF-RSSVCMVRCSP---RIVAVGL-ATQIYCFDAL 219 (994)
Q Consensus 152 ~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktg-------e~V~tL~f-~S~V~sV~~S~---~iLAVgl-~~~I~IwDa~ 219 (994)
.+++|+|||+.++ +.+.++.. ...|.+|++++ ++|+++. ++.|++||+.
T Consensus 102 -------------------~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 162 (402)
T 2aq5_A 102 -------------------EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162 (402)
T ss_dssp -------------------TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT
T ss_pred -------------------CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC
Confidence 1368999999988 56777764 56899999987 3677655 5689999999
Q ss_pred CCceeEEE--eecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEe
Q 001935 220 TLENKFSV--LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY 297 (994)
Q Consensus 220 Tle~l~tL--~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~ 297 (994)
+.+.+.++ ..|..+ . ..+++.. ++..
T Consensus 163 ~~~~~~~~~~~~~~~~-------------v-------~~~~~~~---------------------------~~~~----- 190 (402)
T 2aq5_A 163 TGAAVLTLGPDVHPDT-------------I-------YSVDWSR---------------------------DGAL----- 190 (402)
T ss_dssp TTEEEEEECTTTCCSC-------------E-------EEEEECT---------------------------TSSC-----
T ss_pred CCCccEEEecCCCCCc-------------e-------EEEEECC---------------------------CCCE-----
Confidence 98887777 333321 0 1122211 1111
Q ss_pred ehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe-ccCCCC-eEEE
Q 001935 298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-KAHTSP-ISAL 375 (994)
Q Consensus 298 A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~-~aHtsp-IsaL 375 (994)
+++++.||.|+|||+.+++.+..+ .+|... +.++
T Consensus 191 --------------------------------------------l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 226 (402)
T 2aq5_A 191 --------------------------------------------ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHA 226 (402)
T ss_dssp --------------------------------------------EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEE
T ss_pred --------------------------------------------EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEE
Confidence 123467899999999999999999 799876 9999
Q ss_pred EECCCCCEEEEE---EcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE-EeC
Q 001935 376 CFDPSGTLLVTA---SVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI-VSS 451 (994)
Q Consensus 376 aFSPdGtlLATA---S~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs-gS~ 451 (994)
+|+|+|++|+++ +.+| .|+|||+.. +. ....+..+ + +...|.+++|+||+++|++ ++.
T Consensus 227 ~~~~~~~~l~~g~~~~~d~-~i~iwd~~~-------~~-------~~~~~~~~--~-~~~~v~~~~~s~~~~~l~~~g~~ 288 (402)
T 2aq5_A 227 VFVSEGKILTTGFSRMSER-QVALWDTKH-------LE-------EPLSLQEL--D-TSSGVLLPFFDPDTNIVYLCGKG 288 (402)
T ss_dssp EECSTTEEEEEEECTTCCE-EEEEEETTB-------CS-------SCSEEEEC--C-CCSSCEEEEEETTTTEEEEEETT
T ss_pred EEcCCCcEEEEeccCCCCc-eEEEEcCcc-------cc-------CCceEEec--c-CCCceeEEEEcCCCCEEEEEEcC
Confidence 999999999999 5644 599999863 10 00122222 2 2346899999999999975 557
Q ss_pred CCeEEEEecCCC
Q 001935 452 KGTCHVFVLSPF 463 (994)
Q Consensus 452 dGTVhIw~I~~~ 463 (994)
||+|+||++...
T Consensus 289 dg~i~i~d~~~~ 300 (402)
T 2aq5_A 289 DSSIRYFEITSE 300 (402)
T ss_dssp CSCEEEEEECSS
T ss_pred CCeEEEEEecCC
Confidence 999999999764
No 83
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.82 E-value=2.9e-18 Score=203.83 Aligned_cols=247 Identities=15% Similarity=0.145 Sum_probs=170.6
Q ss_pred eEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEE
Q 001935 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (994)
Q Consensus 98 ~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrL 177 (994)
...+..|.+.|.+|++.|+. ..+|+..+ .+++|+|
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~------------~~~l~s~s---------------------------------~D~~i~~ 409 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDN------------ADIIVSAS---------------------------------RDKSIIL 409 (694)
T ss_dssp EEEEECCSSCEEEEECCTTC------------CSEEEEEE---------------------------------TTSEEEE
T ss_pred hhhcccCCceeEEEEecCCC------------CCEEEEEe---------------------------------CCCcEEE
Confidence 34577899999999987643 13666432 1478999
Q ss_pred EECCC-----CeEEEEEeCC-CcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCcc
Q 001935 178 YSFQS-----HCYEHVLRFR-SSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (994)
Q Consensus 178 WDlkt-----ge~V~tL~f~-S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~g 248 (994)
||+.+ +...+.+..| ..|.+|++++ ++|+++. ++.|+|||+.+.+...++..|..+ ..
T Consensus 410 W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~-------------v~ 476 (694)
T 3dm0_A 410 WKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD-------------VL 476 (694)
T ss_dssp EECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-------------EE
T ss_pred EEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCC-------------EE
Confidence 99976 3455666644 6899999987 5777655 668999999999988888877552 24
Q ss_pred ceEEcc--cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCC
Q 001935 249 PMAVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (994)
Q Consensus 249 plAlgp--RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~ 324 (994)
.+++++ ++|+.++. .+.+|+........+.. ...+....
T Consensus 477 ~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~-------------------------~~~~h~~~------------ 519 (694)
T 3dm0_A 477 SVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE-------------------------GGEGHRDW------------ 519 (694)
T ss_dssp EEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS-------------------------STTSCSSC------------
T ss_pred EEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc-------------------------CCCCCCCc------------
Confidence 567766 67776653 57788741100000000 00000000
Q ss_pred CCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcc
Q 001935 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 404 (994)
Q Consensus 325 s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~ 404 (994)
...+.+++... ...+++++.||.|+|||+.+++.+..+.+|..+|.+|+|+|+|++|||++.||+ |+|||+..
T Consensus 520 -v~~~~~~~~~~--~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~--- 592 (694)
T 3dm0_A 520 -VSCVRFSPNTL--QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAE--- 592 (694)
T ss_dssp -EEEEEECSCSS--SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTT---
T ss_pred -EEEEEEeCCCC--cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCC---
Confidence 00001111110 012457789999999999999999999999999999999999999999999776 99999853
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 405 ~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
+ ..++.+.. ...|.+++|+||+.+|+++++ ++|+||++....
T Consensus 593 ----~----------~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~ 634 (694)
T 3dm0_A 593 ----G----------KKLYSLEA---NSVIHALCFSPNRYWLCAATE-HGIKIWDLESKS 634 (694)
T ss_dssp ----T----------EEEECCBC---SSCEEEEEECSSSSEEEEEET-TEEEEEETTTTE
T ss_pred ----C----------ceEEEecC---CCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCC
Confidence 3 46666542 357999999999999988764 569999997643
No 84
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.82 E-value=2.7e-18 Score=189.12 Aligned_cols=251 Identities=11% Similarity=0.052 Sum_probs=173.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCC------cceEeeeeccCCEEEEEEecCCCCCCCCC
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDAS------NFNELVSKRDGPVSFLQMQPFPVKDDGCE 124 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g------~v~ells~hdGpV~~v~~lP~p~~s~~~D 124 (994)
..+|++.|..+.|... ++++|++|..+| ++|||+...+ .....+..|.++|.++++.|+.
T Consensus 77 ~~~h~~~V~~~~~~p~------~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~------- 143 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPH------NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA------- 143 (402)
T ss_dssp BCCCSSCEEEEEECTT------CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB-------
T ss_pred EecCCCCEEEEEeCCC------CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC-------
Confidence 4568899999999631 356888887776 9999996532 4456778899999999999864
Q ss_pred CccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE--e-CCCcEEEEEec
Q 001935 125 GFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL--R-FRSSVCMVRCS 201 (994)
Q Consensus 125 ~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL--~-f~S~V~sV~~S 201 (994)
+.+|+..+ .+++|++||+++++++.++ . +...|.+++++
T Consensus 144 -----~~~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 144 -----QNVLLSAG---------------------------------CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185 (402)
T ss_dssp -----TTEEEEEE---------------------------------TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC
T ss_pred -----CCEEEEEc---------------------------------CCCEEEEEECCCCCccEEEecCCCCCceEEEEEC
Confidence 12556432 1367999999999999999 3 45789999998
Q ss_pred C--CeEEEE-eCCeEEEEECCCCceeEEE-eecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcC
Q 001935 202 P--RIVAVG-LATQIYCFDALTLENKFSV-LTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNL 277 (994)
Q Consensus 202 ~--~iLAVg-l~~~I~IwDa~Tle~l~tL-~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsl 277 (994)
+ ++|+++ .++.|++||+.+.+.+.++ ..+... .... +++..
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------~~~~-------~~~~~---------------- 230 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT------------RPVH-------AVFVS---------------- 230 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS------------SCCE-------EEECS----------------
T ss_pred CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC------------cceE-------EEEcC----------------
Confidence 7 466665 4678999999998887776 333221 0011 11211
Q ss_pred CCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECC
Q 001935 278 TPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV 357 (994)
Q Consensus 278 tp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~ 357 (994)
+ +.+++ .| .+...+|.|+|||+.
T Consensus 231 -----------~-~~~l~-----------~g----------------------------------~~~~~d~~i~iwd~~ 253 (402)
T 2aq5_A 231 -----------E-GKILT-----------TG----------------------------------FSRMSERQVALWDTK 253 (402)
T ss_dssp -----------T-TEEEE-----------EE----------------------------------ECTTCCEEEEEEETT
T ss_pred -----------C-CcEEE-----------Ee----------------------------------ccCCCCceEEEEcCc
Confidence 1 11110 00 011578999999999
Q ss_pred CCcE-EEEec-cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEE
Q 001935 358 TRAI-ISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQ 435 (994)
Q Consensus 358 s~~~-i~~~~-aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~ 435 (994)
+++. +..+. .|...|.+++|+|+|++|++++..+..|+||++.. +. ..+..+..-.+...|.
T Consensus 254 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~-------~~---------~~~~~l~~~~~~~~v~ 317 (402)
T 2aq5_A 254 HLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS-------EA---------PFLHYLSMFSSKESQR 317 (402)
T ss_dssp BCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS-------ST---------TCEEEEEEECCSSCCS
T ss_pred cccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC-------CC---------cceEeecccccCCccc
Confidence 8764 33333 57889999999999999986664344599999964 21 1133332222346799
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 436 DICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 436 sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
+++|+||++++++ .++++++|++...
T Consensus 318 ~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 318 GMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp EEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred ceEEeccccccee--cceeEEEEEcCCC
Confidence 9999999999875 5779999999864
No 85
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.82 E-value=2.1e-18 Score=187.01 Aligned_cols=265 Identities=13% Similarity=0.109 Sum_probs=171.5
Q ss_pred ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEE
Q 001935 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (994)
Q Consensus 97 v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVr 176 (994)
+..++..|.++|.++++.| .+|++.+ .+++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~---------------~~l~s~~---------------------------------~dg~i~ 39 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN---------------SFTVSCS---------------------------------GDGYLK 39 (397)
T ss_dssp EEEESSCSSSCEEEEEECS---------------SEEEEEE---------------------------------TTSEEE
T ss_pred hhhhhhhhhcCeEEEEecC---------------CeEEEEc---------------------------------CCCEEE
Confidence 3567778999999999875 2566532 136899
Q ss_pred EEECCCCe------EEEEEe-CCCcEEEEEecC---------CeEEEEe-CCeEEEEECCCCce-----eEEEeecCCcc
Q 001935 177 FYSFQSHC------YEHVLR-FRSSVCMVRCSP---------RIVAVGL-ATQIYCFDALTLEN-----KFSVLTYPVPQ 234 (994)
Q Consensus 177 LWDlktge------~V~tL~-f~S~V~sV~~S~---------~iLAVgl-~~~I~IwDa~Tle~-----l~tL~t~p~p~ 234 (994)
+||+.+++ .+..+. +...|.++++++ ++|+++. ++.|++||+.+.+. +..+..++...
T Consensus 40 iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 119 (397)
T 1sq9_A 40 VWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM 119 (397)
T ss_dssp EEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTG
T ss_pred EEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccccccc
Confidence 99999988 666765 457899999875 4566655 66899999998876 66666553100
Q ss_pred ccCCCccccccCccceEEc----c--cE-EEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhh
Q 001935 235 LAGQGAVGINVGYGPMAVG----P--RW-LAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (994)
Q Consensus 235 ~~~~g~~~vnv~~gplAlg----p--Rw-LAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~l 305 (994)
. ......+++. + ++ |+.++. .+.+|+........ ......+.|.
T Consensus 120 ----~----~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~---------------- 172 (397)
T 1sq9_A 120 ----K----KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES---NSLTLNWSPT---------------- 172 (397)
T ss_dssp ----G----GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH---HHTTTCCCCE----------------
T ss_pred ----C----CCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc---ccceeeccCc----------------
Confidence 0 0012456777 5 66 776643 46678632100000 0000000000
Q ss_pred hcccceeecccccc-ccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc---C---CCCeEEEEEC
Q 001935 306 AAGLSKTLSKYCQE-LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA---H---TSPISALCFD 378 (994)
Q Consensus 306 a~Gi~ktlS~y~~~-l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a---H---tspIsaLaFS 378 (994)
.++...... .........+.+++.. .++.+..+|.|+|||+.+++.+..+.. | ..+|.+|+|+
T Consensus 173 -----~~~~~~~~~~~~~~~~i~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 173 -----LELQGTVESPMTPSQFATSVDISERG-----LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp -----EEEEEEECCSSSSCCCCCEEEECTTS-----EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred -----ceeeeeeccccCCCCCceEEEECCCc-----eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 000000000 0000011112222222 245678899999999999999999999 9 9999999999
Q ss_pred CCCCEEEEEEcC---CCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc------------ccccEEEEEEccCC
Q 001935 379 PSGTLLVTASVY---GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI------------TSATIQDICFSHYS 443 (994)
Q Consensus 379 PdGtlLATAS~d---Gt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~------------t~a~I~sIaFSpDg 443 (994)
|+|++|++++.+ | .|+|||+.. + ..+..+. +. +...|.+++|+||+
T Consensus 243 ~~~~~l~~~~~d~~~g-~i~i~d~~~-------~----------~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 303 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFG-CITLYETEF-------G----------ERIGSLS-VPTHSSQASLGEFAHSSWVMSLSFNDSG 303 (397)
T ss_dssp SSTTEEEEEEEETTEE-EEEEEETTT-------C----------CEEEEEC-BC--------CCBSBSSCEEEEEECSSS
T ss_pred CCCCEEEEEecCCCCc-eEEEEECCC-------C----------cccceec-cCcccccccccccccCCcEEEEEECCCC
Confidence 999999999996 5 599999853 2 3555553 31 34679999999999
Q ss_pred CEEEEEeCCCeEEEEecCCCCC
Q 001935 444 QWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 444 ~~LAsgS~dGTVhIw~I~~~gg 465 (994)
++|++++.||+|+||++.....
T Consensus 304 ~~l~~~~~dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 304 ETLCSAGWDGKLRFWDVKTKER 325 (397)
T ss_dssp SEEEEEETTSEEEEEETTTTEE
T ss_pred CEEEEEeCCCeEEEEEcCCCce
Confidence 9999999999999999976543
No 86
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.82 E-value=6.8e-19 Score=212.89 Aligned_cols=264 Identities=12% Similarity=0.140 Sum_probs=177.3
Q ss_pred CCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccC-CCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVED-ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~-~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
..+|++.|..+.|.. +++.|++|..+| ++|||+.. .+.....+..|.++|.++++.|+. .
T Consensus 5 l~gH~~~V~~l~~s~-------dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-----------~ 66 (753)
T 3jro_A 5 ANAHNELIHDAVLDY-------YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-----------F 66 (753)
T ss_dssp ---CCCCEEEECCCS-------SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-----------S
T ss_pred cccCcceeEEEEECC-------CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-----------C
Confidence 467899999999873 456777776665 99999953 234556777899999999998752 1
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCe--EEEEEe-CCCcEEEEEecCC---
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC--YEHVLR-FRSSVCMVRCSPR--- 203 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge--~V~tL~-f~S~V~sV~~S~~--- 203 (994)
..+|++.+. +++|++||+++++ .+..+. +...|.++++++.
T Consensus 67 ~~~l~s~s~---------------------------------Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~ 113 (753)
T 3jro_A 67 GTILASCSY---------------------------------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 113 (753)
T ss_dssp CSEEEEEET---------------------------------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred CCEEEEEeC---------------------------------CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC
Confidence 136665331 3689999999997 556665 4468999999864
Q ss_pred -eEEEEe-CCeEEEEECCCCce--eEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCC
Q 001935 204 -IVAVGL-ATQIYCFDALTLEN--KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTP 279 (994)
Q Consensus 204 -iLAVgl-~~~I~IwDa~Tle~--l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp 279 (994)
+|+++. ++.|++||+.+... ...+..++.+ ...+++.+... .+
T Consensus 114 ~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~--------------------v~~l~~~p~~~-------------~~ 160 (753)
T 3jro_A 114 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG--------------------VNSASWAPATI-------------EE 160 (753)
T ss_dssp SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC--------------------EEEEEECCCC----------------
T ss_pred CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc--------------------eEEEEecCccc-------------cc
Confidence 666655 56899999987643 2333333221 11223322100 00
Q ss_pred CCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC
Q 001935 280 SGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR 359 (994)
Q Consensus 280 ~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~ 359 (994)
. +.. ...++.. .+++++.||.|+|||+.++
T Consensus 161 ---------~-~~~------------------------------------~~~~d~~----~l~sgs~dg~I~iwd~~~~ 190 (753)
T 3jro_A 161 ---------D-GEH------------------------------------NGTKESR----KFVTGGADNLVKIWKYNSD 190 (753)
T ss_dssp ----------------------------------------------------CGGGC----CEEEEETTSCEEEEEEETT
T ss_pred ---------c-ccc------------------------------------ccCCCCC----EEEEEECCCeEEEEeccCC
Confidence 0 000 0000001 2345678999999999877
Q ss_pred ----cEEEEeccCCCCeEEEEECCC---CCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc
Q 001935 360 ----AIISQFKAHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA 432 (994)
Q Consensus 360 ----~~i~~~~aHtspIsaLaFSPd---GtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a 432 (994)
..+..+.+|..+|.+|+|+|+ |++|++++.+|+ |+||++.... + .+ ...+.. ...+..
T Consensus 191 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iwd~~~~~-----~----~~---~~~~~~--~~~~~~ 255 (753)
T 3jro_A 191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIWTQDNEQ-----G----PW---KKTLLK--EEKFPD 255 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EEEEEESSSS-----S----CC---BCCBSS--SSCCSS
T ss_pred cccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EEEecCCCCC-----C----cc---eeEEec--cCCCCC
Confidence 567888999999999999999 999999999776 9999986410 0 00 001111 112345
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 433 TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 433 ~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
.|++++|+||+++|++++.||+|+||++...+
T Consensus 256 ~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 256 VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 79999999999999999999999999998643
No 87
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.2e-18 Score=189.61 Aligned_cols=269 Identities=11% Similarity=0.089 Sum_probs=163.9
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEcc--CCCcceEeeeeccCCEEEEEEecCCCCCCCCC---Ccc
Q 001935 54 DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVE--DASNFNELVSKRDGPVSFLQMQPFPVKDDGCE---GFR 127 (994)
Q Consensus 54 ~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~--~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D---~F~ 127 (994)
+|...|..+.|.. ++..|++|..+| ++|||++ ..+.+...+..| .|+.+.+.|.+....... .+.
T Consensus 109 ~h~~~v~~~~~~~-------~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~ 179 (437)
T 3gre_A 109 DCSSTVTQITMIP-------NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFGKNEYAVRMRAFVN 179 (437)
T ss_dssp ECSSCEEEEEECT-------TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred cCCCCEEEEEEeC-------CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcccccCceEEEEEEc
Confidence 3677788888762 456777777766 8999995 245555555544 566665554220000000 011
Q ss_pred ccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC---CCcEEEEEecC--
Q 001935 128 KLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF---RSSVCMVRCSP-- 202 (994)
Q Consensus 128 ~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f---~S~V~sV~~S~-- 202 (994)
....+|++.+ .+++|++||+++++++.++.. ...|.++++++
T Consensus 180 ~~~~~l~~~~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 226 (437)
T 3gre_A 180 EEKSLLVALT---------------------------------NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC 226 (437)
T ss_dssp SSCEEEEEEE---------------------------------TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS
T ss_pred CCCCEEEEEe---------------------------------CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC
Confidence 2223444321 247899999999999999975 47999999987
Q ss_pred CeEEEEe-CCeEEEEECCCCceeEEEe-ecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCC
Q 001935 203 RIVAVGL-ATQIYCFDALTLENKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS 280 (994)
Q Consensus 203 ~iLAVgl-~~~I~IwDa~Tle~l~tL~-t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~ 280 (994)
++|+++. ++.|++||+.+.+.+.++. .+..+ . ..|++..
T Consensus 227 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------v-------~~~~~~~------------------- 267 (437)
T 3gre_A 227 CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAP-------------I-------THVEVCQ------------------- 267 (437)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEE-------------E-------EEEEECT-------------------
T ss_pred CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCc-------------e-------EEEEecc-------------------
Confidence 5777665 5579999999988777664 22110 0 1111111
Q ss_pred CCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc
Q 001935 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA 360 (994)
Q Consensus 281 ~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~ 360 (994)
.++|++. .+++++.||.|+|||+.+++
T Consensus 268 ----~~s~~~~-------------------------------------------------~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 268 ----FYGKNSV-------------------------------------------------IVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp ----TTCTTEE-------------------------------------------------EEEEESTTEEEEEEETTTTE
T ss_pred ----ccCCCcc-------------------------------------------------EEEEEcCCCcEEEEEcCCCc
Confidence 1111100 12345678899999998888
Q ss_pred EEEEecc--------------------------CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccC-CCCC--C
Q 001935 361 IISQFKA--------------------------HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRS-GSGN--H 411 (994)
Q Consensus 361 ~i~~~~a--------------------------HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~-~sG~--~ 411 (994)
.+..+.+ |..+|.+|+|+ +|++|++++.||+ |+||++....... ..+. .
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~ 372 (437)
T 3gre_A 295 CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSS-IVMFSLNELSSSKAVISPSRF 372 (437)
T ss_dssp EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTE-EEEEETTCGGGCEEEECC--C
T ss_pred EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCe-EEEEECCCcccceEEeccccc
Confidence 7777764 55668889999 7899999999665 9999986420000 0000 0
Q ss_pred cc-----ccCCcceEEE-----------EEecccccccEEEEEEccC--CCEEEEEeCCCeEEEEe
Q 001935 412 KY-----DWNSSHVHLY-----------KLHRGITSATIQDICFSHY--SQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 412 ~~-----~~~~s~~~l~-----------~L~RG~t~a~I~sIaFSpD--g~~LAsgS~dGTVhIw~ 459 (994)
.. .+......+. ....+ +...|.+|+|+++ +.+|++++.||+|+||.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 373 SDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLY-HHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCEEEEEEEETTEEEEEEECC--------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred CceEEEEEeecceEEEEEecccccccccCcccc-cccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 00 0000000000 00011 4567999999998 88999999999999995
No 88
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.81 E-value=1.9e-18 Score=184.87 Aligned_cols=243 Identities=10% Similarity=0.021 Sum_probs=167.0
Q ss_pred EeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEE
Q 001935 99 ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFY 178 (994)
Q Consensus 99 ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLW 178 (994)
+++..|.++|.++++.|++ .+||+.+ .+++|++|
T Consensus 2 ~~~~~~~~~i~~~~~s~~~-------------~~l~~~~---------------------------------~d~~v~i~ 35 (372)
T 1k8k_C 2 AYHSFLVEPISCHAWNKDR-------------TQIAICP---------------------------------NNHEVHIY 35 (372)
T ss_dssp CEEESCSSCCCEEEECTTS-------------SEEEEEC---------------------------------SSSEEEEE
T ss_pred ceecccCCCeEEEEECCCC-------------CEEEEEe---------------------------------CCCEEEEE
Confidence 4566789999999999865 3666521 13689999
Q ss_pred ECCCCe--EEEEEeC-CCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEee--cCCccccCCCccccccCccce
Q 001935 179 SFQSHC--YEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLT--YPVPQLAGQGAVGINVGYGPM 250 (994)
Q Consensus 179 Dlktge--~V~tL~f-~S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~l~tL~t--~p~p~~~~~g~~~vnv~~gpl 250 (994)
|+.+++ .+.++.. ...|.++++++ ++|+++. ++.|++||+.+.+....+.. +.. ....+
T Consensus 36 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------------~v~~~ 102 (372)
T 1k8k_C 36 EKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR-------------AARCV 102 (372)
T ss_dssp EEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSS-------------CEEEE
T ss_pred eCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCC-------------ceeEE
Confidence 999998 8888864 56899999986 5677655 56899999988775544432 222 12346
Q ss_pred EEcc--cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCC
Q 001935 251 AVGP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (994)
Q Consensus 251 Algp--RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~ 326 (994)
++.+ ++|+.++. .+.+|+...... ..+... +..+ + ....
T Consensus 103 ~~~~~~~~l~~~~~d~~v~i~d~~~~~~----------------~~~~~~--------~~~~-------~------~~~i 145 (372)
T 1k8k_C 103 RWAPNEKKFAVGSGSRVISICYFEQEND----------------WWVCKH--------IKKP-------I------RSTV 145 (372)
T ss_dssp EECTTSSEEEEEETTSSEEEEEEETTTT----------------EEEEEE--------ECTT-------C------CSCE
T ss_pred EECCCCCEEEEEeCCCEEEEEEecCCCc----------------ceeeee--------eecc-------c------CCCe
Confidence 6765 67777653 456676311000 000000 0000 0 0000
Q ss_pred CCccCCCccccccccccccCCCCeEEEEEC------------------CCCcEEEEeccCCCCeEEEEECCCCCEEEEEE
Q 001935 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDF------------------VTRAIISQFKAHTSPISALCFDPSGTLLVTAS 388 (994)
Q Consensus 327 s~~s~s~~~k~g~~~~as~s~dG~V~VwDl------------------~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS 388 (994)
..+.+++..+ .++.++.||.|+|||+ ..++.+..+.+|..+|.+++|+|+|++|++++
T Consensus 146 ~~~~~~~~~~----~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 146 LSLDWHPNSV----LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp EEEEECTTSS----EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred eEEEEcCCCC----EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 1111222222 2346778999999995 46788999999999999999999999999999
Q ss_pred cCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 389 VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 389 ~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
.+|+ |+|||+.. + ..+.++. + +...|.+++|+||+++|+++ .|++|+||++..
T Consensus 222 ~d~~-i~i~d~~~-------~----------~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 222 HDST-VCLADADK-------K----------MAVATLA-S-ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TTTE-EEEEEGGG-------T----------TEEEEEE-C-SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCE-EEEEECCC-------C----------ceeEEEc-c-CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9665 99999853 2 3566664 3 34579999999999999988 899999999977
No 89
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.3e-18 Score=186.42 Aligned_cols=102 Identities=11% Similarity=0.100 Sum_probs=78.0
Q ss_pred ccCCCCeEEEEECCCCcEE-EEecc-CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceE
Q 001935 344 DMDNAGIVVVKDFVTRAII-SQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~~i-~~~~a-HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~ 421 (994)
+++.||.|+|||+.+++.+ ..|.. |..+|.+|+|+|+|.+||+++. + .|+|||+... .. ...
T Consensus 187 sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~-~v~iwd~~~~-------~~-------~~~ 250 (343)
T 3lrv_A 187 LYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-Q-TVVCFDLRKD-------VG-------TLA 250 (343)
T ss_dssp EECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-S-BEEEEETTSS-------TT-------CBS
T ss_pred EEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-C-eEEEEEcCCC-------Cc-------cee
Confidence 4568999999999999877 88998 9999999999999999999994 6 6999999642 00 000
Q ss_pred EEEEecccccccE--EEEEEccCCCEEEEEeC-CCeEEEEecCCC
Q 001935 422 LYKLHRGITSATI--QDICFSHYSQWIAIVSS-KGTCHVFVLSPF 463 (994)
Q Consensus 422 l~~L~RG~t~a~I--~sIaFSpDg~~LAsgS~-dGTVhIw~I~~~ 463 (994)
+..+. + +...+ .+++|+||+++|++++. +++++||++...
T Consensus 251 ~~~~~-~-~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 251 YPTYT-I-PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp SCCCB-C------CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ecccc-c-ccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 10000 0 00112 46999999999999999 999999998654
No 90
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.81 E-value=2.5e-17 Score=174.70 Aligned_cols=259 Identities=12% Similarity=0.091 Sum_probs=165.1
Q ss_pred ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEE
Q 001935 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (994)
Q Consensus 97 v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVr 176 (994)
+..++..|.++|.++++.|+. +.|+++++.+ ..+++|+
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~-------------~~l~~~~s~~-----------------------------~~d~~v~ 47 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCS-------------AKFVTMGNFA-----------------------------RGTGVIQ 47 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTS-------------SEEEEEEC-------------------------------CCCEEEE
T ss_pred hhhhccCCCCceEEEEEcCCC-------------ceEEEecCcc-----------------------------CCCcEEE
Confidence 445667799999999999864 2344433110 0137899
Q ss_pred EEECCCCeEEEEE--eCCCcEEEEEecC-----CeEEEEe-CCeEEEEECCCCc-eeEEEeecCCccccCCCccccccCc
Q 001935 177 FYSFQSHCYEHVL--RFRSSVCMVRCSP-----RIVAVGL-ATQIYCFDALTLE-NKFSVLTYPVPQLAGQGAVGINVGY 247 (994)
Q Consensus 177 LWDlktge~V~tL--~f~S~V~sV~~S~-----~iLAVgl-~~~I~IwDa~Tle-~l~tL~t~p~p~~~~~g~~~vnv~~ 247 (994)
|||+.+++..... .+...|.+++|++ ++|+++. ++.|++||+.+.+ .+..+..|..+ .
T Consensus 48 iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------v 114 (357)
T 3i2n_A 48 LYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEI-------------I 114 (357)
T ss_dssp EEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSC-------------E
T ss_pred EEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccc-------------e
Confidence 9999999875544 5667999999987 4566655 6689999999887 77777665442 1
Q ss_pred cce------EEcc--cEEEEccC--CeeeccCCcc--CCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeecc
Q 001935 248 GPM------AVGP--RWLAYASN--TLLLSNSGRL--SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSK 315 (994)
Q Consensus 248 gpl------Algp--RwLAyas~--~~~iwd~G~~--s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~ 315 (994)
..+ ++++ ++|+.++. .+.+|+.... ....+.... ... ...+ ..+.
T Consensus 115 ~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-----~~~-~~~v----------------~~~~- 171 (357)
T 3i2n_A 115 NAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ-----GEN-KRDC----------------WTVA- 171 (357)
T ss_dssp EEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT-----TSC-CCCE----------------EEEE-
T ss_pred EEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC-----CCC-CCce----------------EEEE-
Confidence 122 2333 57776653 4678874211 000000000 000 0000 0000
Q ss_pred ccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC---CCCEEEEEEcCCC
Q 001935 316 YCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP---SGTLLVTASVYGN 392 (994)
Q Consensus 316 y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSP---dGtlLATAS~dGt 392 (994)
+ . ..+++... .++.+..+|.|++||+.+++.+ ....|..+|.+++|+| +|.+|++++.+|+
T Consensus 172 ~----~-------~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 235 (357)
T 3i2n_A 172 F----G-------NAYNQEER----VVCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKDISMNKLVATSLEGK 235 (357)
T ss_dssp E----E-------CCCC-CCC----EEEEEETTSEEEEEETTTTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEESTTE
T ss_pred E----E-------eccCCCCC----EEEEEccCCeEEEEECccCcee-eecCCCCceEEEEcCCCCCCCCEEEEECCCCe
Confidence 0 0 00112222 2346778999999999998864 4577999999999999 9999999999665
Q ss_pred eEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEEeCCCeEEEEecCCCC
Q 001935 393 NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 393 ~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~-~LAsgS~dGTVhIw~I~~~g 464 (994)
|+||++... . .........+ .+ +...|.+++|+||++ +|++++.||+|+||++....
T Consensus 236 -i~i~d~~~~-------~-----~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 236 -FHVFDMRTQ-------H-----PTKGFASVSE-KA-HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp -EEEEEEEEE-------E-----TTTEEEEEEE-EC-CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred -EEEEeCcCC-------C-----cccceeeecc-CC-CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 999998531 0 0000111122 24 346799999999999 89999999999999997644
No 91
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.2e-18 Score=190.03 Aligned_cols=177 Identities=12% Similarity=0.167 Sum_probs=128.2
Q ss_pred CCEEEEEECC--CCeEEEEEe---CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeE----EEeecCCccccCCC
Q 001935 172 PTAVRFYSFQ--SHCYEHVLR---FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKF----SVLTYPVPQLAGQG 239 (994)
Q Consensus 172 p~tVrLWDlk--tge~V~tL~---f~S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~l~----tL~t~p~p~~~~~g 239 (994)
+++|+|||+. +++++..+. +...|.+|+|++ ++|+++. ++.|++||+.+.+... .+..|..+
T Consensus 124 dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~------ 197 (450)
T 2vdu_B 124 DKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSM------ 197 (450)
T ss_dssp GTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSC------
T ss_pred CCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCc------
Confidence 4789999999 898888884 557899999987 5777765 4679999988766432 22222110
Q ss_pred ccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeecccccc
Q 001935 240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 319 (994)
Q Consensus 240 ~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~ 319 (994)
...|+|..+. .++.
T Consensus 198 --------------v~~~~~sp~~-------------------------~~~~--------------------------- 211 (450)
T 2vdu_B 198 --------------LTDVHLIKDS-------------------------DGHQ--------------------------- 211 (450)
T ss_dssp --------------EEEEEEEECT-------------------------TSCE---------------------------
T ss_pred --------------eEEEEEcCCC-------------------------CCCc---------------------------
Confidence 0112222210 0010
Q ss_pred ccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEe
Q 001935 320 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFR 398 (994)
Q Consensus 320 l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~-~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwd 398 (994)
.+++++.||.|+|||+.+++.+.. +.+|..+|.+|+|+ +|++||+++.+|+ |+|||
T Consensus 212 ---------------------~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd 268 (450)
T 2vdu_B 212 ---------------------FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDK-IFAWD 268 (450)
T ss_dssp ---------------------EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSE-EEEEE
T ss_pred ---------------------EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCe-EEEEE
Confidence 122456789999999999988877 66999999999999 9999999998664 99999
Q ss_pred CCCCcccCCCCCCccccCCcceEEEEEecc-----------------------cccccEEEEEEccCCCEEEEEe-CCCe
Q 001935 399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRG-----------------------ITSATIQDICFSHYSQWIAIVS-SKGT 454 (994)
Q Consensus 399 i~p~~~~~~sG~~~~~~~~s~~~l~~L~RG-----------------------~t~a~I~sIaFSpDg~~LAsgS-~dGT 454 (994)
+.. | ..+..+..+ .....|.+|+|+||+++|++++ .+++
T Consensus 269 ~~~-------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~ 331 (450)
T 2vdu_B 269 WKT-------G----------KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC 331 (450)
T ss_dssp TTT-------C----------CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred CCC-------C----------cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence 864 3 345555321 1224689999999999999999 8999
Q ss_pred EEEEec
Q 001935 455 CHVFVL 460 (994)
Q Consensus 455 VhIw~I 460 (994)
|+||++
T Consensus 332 i~iw~~ 337 (450)
T 2vdu_B 332 IIILEM 337 (450)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999999
No 92
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.81 E-value=4.2e-18 Score=190.62 Aligned_cols=272 Identities=13% Similarity=0.013 Sum_probs=162.3
Q ss_pred CCeEEEEEecCcEEEEEccCCC--cceEeeeeccCCEEEEEEecCCCCC----CCC----C----Ccccc----CcEEEE
Q 001935 74 FKQVLLLGYQNGFQVLDVEDAS--NFNELVSKRDGPVSFLQMQPFPVKD----DGC----E----GFRKL----HPFLLV 135 (994)
Q Consensus 74 ~~~vL~lGy~~G~qVWDv~~~g--~v~ells~hdGpV~~v~~lP~p~~s----~~~----D----~F~~s----rpLLAv 135 (994)
...+++++....+++|+..+.. ++...+..|+.||-.|.++|+--.- -+. + .|... +++++.
T Consensus 53 ~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s 132 (356)
T 2w18_A 53 KEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLK 132 (356)
T ss_dssp CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEE
T ss_pred CccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEe
Confidence 3468999999999999997643 4445556677788887777632100 000 0 02222 233332
Q ss_pred EecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEEC-CCCeEEEEEeCCC-cEEEEEecC-----CeEEEE
Q 001935 136 VAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSF-QSHCYEHVLRFRS-SVCMVRCSP-----RIVAVG 208 (994)
Q Consensus 136 Vsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDl-ktge~V~tL~f~S-~V~sV~~S~-----~iLAVg 208 (994)
.+. . ..+-.+.+|..-... ....+.+|++|++ .+|+.+.++..++ .|..++|++ .+||.+
T Consensus 133 -~g~---------~-~~v~~l~~g~lv~ss--~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg 199 (356)
T 2w18_A 133 -SGN---------I-KAVLGLTKRRLVSSS--GTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT 199 (356)
T ss_dssp -EEE---------E-EEEEEETTTEEEEEE--SSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred -CCC---------e-EEEEecCCCcEEEec--ccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence 110 0 011112222210000 0012689999999 5688888876654 555555554 678874
Q ss_pred e-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcC
Q 001935 209 L-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTS 287 (994)
Q Consensus 209 l-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stS 287 (994)
. |+.|+|||+.++++++++..+.... .+...+||.++..
T Consensus 200 S~D~TIkIWDl~TGk~l~tL~g~~~~v-----------------~~v~~vafSpdG~----------------------- 239 (356)
T 2w18_A 200 TIMNNIVIWNLKTGQLLKKMHIDDSYQ-----------------ASVCHKAYSEMGL----------------------- 239 (356)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCC--------------------CCCEEEEEEETTE-----------------------
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCcce-----------------eeeEEEEECCCCC-----------------------
Confidence 4 6689999999999999997643310 0112233433211
Q ss_pred CCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEe--
Q 001935 288 PGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQF-- 365 (994)
Q Consensus 288 p~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~-- 365 (994)
.+++. . .+.. .| .+++++.|++|++||..+++.+..+
T Consensus 240 ----~lvs~-s----------------------~~~~---------~w-----~laSGs~D~tIklWd~~tgk~l~v~~~ 278 (356)
T 2w18_A 240 ----LFIVL-S----------------------HPCA---------KE-----SESLRSPVFQLIVINPKTTLSVGVMLY 278 (356)
T ss_dssp ----EEEEE-C------------------------------------------------CCEEEEEEETTTTEEEEEEEE
T ss_pred ----EEEEe-c----------------------cCCC---------cc-----eeeccCCCcEEEEEECCCCEEEEEEEe
Confidence 11100 0 0000 00 1235678999999999999887665
Q ss_pred ---ccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 001935 366 ---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (994)
Q Consensus 366 ---~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpD 442 (994)
.+|...+. ..+.+|.++|+++.||+ |+|||+.. | +++.+|. |++...+.+++||||
T Consensus 279 ~~p~Gh~~~~l--sg~~sg~~lASgS~DgT-IkIWDl~t-------G----------k~l~tL~-gH~~~vvs~vafSPD 337 (356)
T 2w18_A 279 CLPPGQAGRFL--EGDVKDHCAAAILTSGT-IAIWDLLL-------G----------QCTALLP-PVSDQHWSFVKWSGT 337 (356)
T ss_dssp CCCTTCCCCEE--EEEEETTEEEEEETTSC-EEEEETTT-------C----------SEEEEEC-CC--CCCCEEEECSS
T ss_pred eccCCCcceeE--ccccCCCEEEEEcCCCc-EEEEECCC-------C----------cEEEEec-CCCCCeEEEEEECCC
Confidence 37776654 44445999999999776 99999964 4 5777874 555455567999999
Q ss_pred CCEEEEEeCCCeEEEEec
Q 001935 443 SQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 443 g~~LAsgS~dGTVhIw~I 460 (994)
|++||+|+.|+||+||++
T Consensus 338 G~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 338 DSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSEEEEECTTSCEEEEEE
T ss_pred CCEEEEEECCCcEEEecC
Confidence 999999999999999985
No 93
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.81 E-value=7.2e-18 Score=179.49 Aligned_cols=208 Identities=14% Similarity=0.160 Sum_probs=146.2
Q ss_pred eeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEE
Q 001935 100 LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYS 179 (994)
Q Consensus 100 lls~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWD 179 (994)
++..|.++|.+++|.|++ .+||..+ .+++|+|||
T Consensus 4 ~~~~h~~~V~~~~~s~~g-------------~~las~s---------------------------------~D~~v~iw~ 37 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYG-------------KRMATCS---------------------------------SDKTIKIFE 37 (297)
T ss_dssp ECCSCSSCEEEEEECTTS-------------SEEEEEE---------------------------------TTSCEEEEE
T ss_pred eccCCcCceEEEEECCCC-------------CEEEEEe---------------------------------CCCEEEEEe
Confidence 566799999999999875 3666532 146899999
Q ss_pred CCC--CeEEEEEeCC-CcEEEEEecC----CeEEEEe-CCeEEEEECCCCc--eeEEEeecCCccccCCCccccccCccc
Q 001935 180 FQS--HCYEHVLRFR-SSVCMVRCSP----RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGYGP 249 (994)
Q Consensus 180 lkt--ge~V~tL~f~-S~V~sV~~S~----~iLAVgl-~~~I~IwDa~Tle--~l~tL~t~p~p~~~~~g~~~vnv~~gp 249 (994)
+.+ ++++.+|..+ .+|++|+|++ ++|+++. ++.|++||+.+.+ .+.++..|..+
T Consensus 38 ~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~---------------- 101 (297)
T 2pm7_B 38 VEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSAS---------------- 101 (297)
T ss_dssp BCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSC----------------
T ss_pred cCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCc----------------
Confidence 974 4677888654 6899999963 5777655 6689999998754 33333322221
Q ss_pred eEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCc
Q 001935 250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV 329 (994)
Q Consensus 250 lAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~ 329 (994)
.+.++|.+.. .+.
T Consensus 102 ----v~~v~~~p~~--------------------------~g~------------------------------------- 114 (297)
T 2pm7_B 102 ----VNSVQWAPHE--------------------------YGP------------------------------------- 114 (297)
T ss_dssp ----EEEEEECCGG--------------------------GCS-------------------------------------
T ss_pred ----eeEEEeCcCC--------------------------CCc-------------------------------------
Confidence 0112222100 000
Q ss_pred cCCCccccccccccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEECCC-------------CCEEEEEEcCCCeE
Q 001935 330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDPS-------------GTLLVTASVYGNNI 394 (994)
Q Consensus 330 s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~--~i~~~~aHtspIsaLaFSPd-------------GtlLATAS~dGt~I 394 (994)
.+++++.||.|+|||+.++. ....+.+|..+|.+++|+|+ |++||||+.||+ |
T Consensus 115 -----------~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~-v 182 (297)
T 2pm7_B 115 -----------MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL-V 182 (297)
T ss_dssp -----------EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSC-E
T ss_pred -----------EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCc-E
Confidence 12345689999999998763 24678899999999999997 579999999776 9
Q ss_pred EEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC---CEEEEEeCCCeEEEEecCCC
Q 001935 395 NIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS---QWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 395 rVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg---~~LAsgS~dGTVhIw~I~~~ 463 (994)
+|||+.. +. .....+..| +|+ ...|.+|+|+||+ ++||+++.|++|+||++...
T Consensus 183 ~lwd~~~-------~~------~~~~~~~~l-~~H-~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 183 KIWKYNS-------DA------QTYVLESTL-EGH-SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp EEEEEET-------TT------TEEEEEEEE-CCC-SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred EEEEEcC-------CC------ceEEEEEEe-cCC-CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 9999853 10 011234455 454 4679999999995 89999999999999998753
No 94
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.81 E-value=2e-18 Score=186.18 Aligned_cols=225 Identities=15% Similarity=0.185 Sum_probs=163.2
Q ss_pred cCcEEEEEccCCCcceEeeeeccCCEEEEEEec-CCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCc
Q 001935 83 QNGFQVLDVEDASNFNELVSKRDGPVSFLQMQP-FPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMM 161 (994)
Q Consensus 83 ~~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP-~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~ 161 (994)
+..++||+++ .+....++..|.++|.++++.| ++ .+||+.+.
T Consensus 22 ~~~~~v~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~-------------~~l~~~~~----------------------- 64 (408)
T 4a11_B 22 ESTRRVLGLE-LNKDRDVERIHGGGINTLDIEPVEG-------------RYMLSGGS----------------------- 64 (408)
T ss_dssp HHHHHHHTEE-ECTTEEECCCCSSCEEEEEECTTTC-------------CEEEEEET-----------------------
T ss_pred cCcceeeccc-cCcceeeeeccCCcEEEEEEecCCC-------------CEEEEEcC-----------------------
Confidence 3447889885 4667888999999999999998 54 36665321
Q ss_pred CCCCCCCCCCCCEEEEEECCCCeEEEEEe--------------CCCcEEEEEecC---CeEEEEe-CCeEEEEECCCCce
Q 001935 162 DSQSGNCVNSPTAVRFYSFQSHCYEHVLR--------------FRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLEN 223 (994)
Q Consensus 162 d~~~~~~~~sp~tVrLWDlktge~V~tL~--------------f~S~V~sV~~S~---~iLAVgl-~~~I~IwDa~Tle~ 223 (994)
+++|++||+.+++....+. +...|.++++++ ++|+++. ++.|++||+.+.+.
T Consensus 65 ----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 134 (408)
T 4a11_B 65 ----------DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT 134 (408)
T ss_dssp ----------TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE
T ss_pred ----------CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc
Confidence 3679999999987665554 567999999987 3666655 67899999999887
Q ss_pred eEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhh
Q 001935 224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 303 (994)
Q Consensus 224 l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk 303 (994)
...+.. +.+ ... +++... +++ +.
T Consensus 135 ~~~~~~-~~~-------------~~~-------~~~~~~------------------------~~~-~~----------- 157 (408)
T 4a11_B 135 ADVFNF-EET-------------VYS-------HHMSPV------------------------STK-HC----------- 157 (408)
T ss_dssp EEEEEC-SSC-------------EEE-------EEECSS------------------------CSS-CC-----------
T ss_pred ceeccC-CCc-------------eee-------eEeecC------------------------CCC-Cc-----------
Confidence 665542 110 001 111110 000 00
Q ss_pred hhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-
Q 001935 304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT- 382 (994)
Q Consensus 304 ~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGt- 382 (994)
.++.+..+|.|++||+.+++.+..+.+|..+|.+|+|+|+|+
T Consensus 158 -------------------------------------~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 200 (408)
T 4a11_B 158 -------------------------------------LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY 200 (408)
T ss_dssp -------------------------------------EEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTT
T ss_pred -------------------------------------EEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCc
Confidence 112346789999999999999999999999999999999999
Q ss_pred EEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-------------ccccccEEEEEEccCCCEEEEE
Q 001935 383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-------------GITSATIQDICFSHYSQWIAIV 449 (994)
Q Consensus 383 lLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R-------------G~t~a~I~sIaFSpDg~~LAsg 449 (994)
+||+++.+|. |+|||+.... ..+..+.. ..+...|.+++|+||+++|+++
T Consensus 201 ll~~~~~dg~-i~i~d~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 263 (408)
T 4a11_B 201 ILATASADSR-VKLWDVRRAS----------------GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263 (408)
T ss_dssp EEEEEETTSC-EEEEETTCSS----------------CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEcCCCc-EEEEECCCCC----------------cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence 6999999776 9999986420 01111100 1234579999999999999999
Q ss_pred eCCCeEEEEecCCCCC
Q 001935 450 SSKGTCHVFVLSPFGG 465 (994)
Q Consensus 450 S~dGTVhIw~I~~~gg 465 (994)
+.||+|+||++.....
T Consensus 264 ~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 264 GTDNRMRLWNSSNGEN 279 (408)
T ss_dssp ETTSCEEEEETTTCCB
T ss_pred cCCCeEEEEECCCCcc
Confidence 9999999999987543
No 95
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.80 E-value=5.9e-18 Score=176.20 Aligned_cols=246 Identities=13% Similarity=0.067 Sum_probs=165.4
Q ss_pred CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCE
Q 001935 95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA 174 (994)
Q Consensus 95 g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~t 174 (994)
-++...+..|.++|.++++ |+. .+|++.+ .+++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~-------------~~l~s~~---------------------------------~dg~ 40 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDD-------------SKVASVS---------------------------------RDGT 40 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EET-------------TEEEEEE---------------------------------TTSE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCC-------------CEEEEEE---------------------------------cCCc
Confidence 3456778889999999998 654 3566532 1368
Q ss_pred EEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEEEEe-CCeEEEEECCCCc---eeEEEeecCCccccCCCccccccCc
Q 001935 175 VRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE---NKFSVLTYPVPQLAGQGAVGINVGY 247 (994)
Q Consensus 175 VrLWDlktge~V~tL~f-~S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle---~l~tL~t~p~p~~~~~g~~~vnv~~ 247 (994)
|++||+.+++.+..+.. ...|.++++++ ++|+++. ++.|++||+.+.. .+..+..+..+ .
T Consensus 41 v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~-------------i 107 (313)
T 3odt_A 41 VRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGN-------------V 107 (313)
T ss_dssp EEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSC-------------E
T ss_pred EEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccC-------------E
Confidence 99999999998888865 57899999987 5666655 5679999987653 34444444331 2
Q ss_pred cceEEcccEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCC
Q 001935 248 GPMAVGPRWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (994)
Q Consensus 248 gplAlgpRwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s 325 (994)
..+++..++|+.++. .+.+|+.+.. +. .+..+...
T Consensus 108 ~~~~~~~~~l~~~~~d~~i~~~d~~~~---------------------~~----------------~~~~~~~~------ 144 (313)
T 3odt_A 108 CSLSFQDGVVISGSWDKTAKVWKEGSL---------------------VY----------------NLQAHNAS------ 144 (313)
T ss_dssp EEEEEETTEEEEEETTSEEEEEETTEE---------------------EE----------------EEECCSSC------
T ss_pred EEEEecCCEEEEEeCCCCEEEEcCCcE---------------------EE----------------ecccCCCc------
Confidence 345666677776654 3567763211 00 00000000
Q ss_pred CCCccCCC-ccccccccccccCCCCeEEEEECCCCcEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCc
Q 001935 326 SSPVSPNS-VWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 403 (994)
Q Consensus 326 ~s~~s~s~-~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a-HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~ 403 (994)
.....+.+ ... .++.++.+|.|++|| ..+.+..+.. |..+|.+++|+|+|. |++++.+|. |+|||+..
T Consensus 145 v~~~~~~~~~~~----~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~i~d~~~-- 214 (313)
T 3odt_A 145 VWDAKVVSFSEN----KFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL-IKLVDMHT-- 214 (313)
T ss_dssp EEEEEEEETTTT----EEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSE-EEEEETTT--
T ss_pred eeEEEEccCCCC----EEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCe-EEEEECCc--
Confidence 00000000 011 234677899999999 4567777887 999999999999999 888998665 99999853
Q ss_pred ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccccc
Q 001935 404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471 (994)
Q Consensus 404 ~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~ 471 (994)
+ ..+.++. + +...|.+++|+||+ .|++++.||+|+||++........+..
T Consensus 215 -----~----------~~~~~~~-~-~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~ 264 (313)
T 3odt_A 215 -----G----------DVLRTYE-G-HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITL 264 (313)
T ss_dssp -----C----------CEEEEEE-C-CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEEC
T ss_pred -----h----------hhhhhhh-c-CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEec
Confidence 2 3566664 3 34679999999999 589999999999999977543333333
No 96
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.80 E-value=2.6e-17 Score=179.06 Aligned_cols=222 Identities=10% Similarity=0.068 Sum_probs=160.1
Q ss_pred CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCE
Q 001935 95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA 174 (994)
Q Consensus 95 g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~t 174 (994)
..+...+..|.++|.++++.|+.. .+||+.+. +++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~------------~~l~s~~~---------------------------------dg~ 97 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHP------------TTVAVGSK---------------------------------GGD 97 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCT------------TEEEEEEB---------------------------------TSC
T ss_pred cceEEeccCCCCCEEEEEECCCCC------------CEEEEEcC---------------------------------CCe
Confidence 345566778999999999998641 26665321 367
Q ss_pred EEEEECCCCeEEEEEe---CCCcEEEEEecC---CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCc
Q 001935 175 VRFYSFQSHCYEHVLR---FRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (994)
Q Consensus 175 VrLWDlktge~V~tL~---f~S~V~sV~~S~---~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~ 247 (994)
|+|||+.+++....+. +...|.++++++ ++|+++. ++.|++||+.+ +.+..+..+... .
T Consensus 98 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~----------~--- 163 (383)
T 3ei3_B 98 IILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSW----------D--- 163 (383)
T ss_dssp EEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCS----------S---
T ss_pred EEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCC----------C---
Confidence 9999999999888886 457999999987 4666655 56899999986 444444432210 0
Q ss_pred cceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCC
Q 001935 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (994)
Q Consensus 248 gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s 327 (994)
.. ...+++.. ++.
T Consensus 164 ~~----v~~~~~~~---------------------------~~~------------------------------------ 176 (383)
T 3ei3_B 164 YW----YCCVDVSV---------------------------SRQ------------------------------------ 176 (383)
T ss_dssp CC----EEEEEEET---------------------------TTT------------------------------------
T ss_pred CC----eEEEEECC---------------------------CCC------------------------------------
Confidence 00 01122221 111
Q ss_pred CccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEeCCCCcccC
Q 001935 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRS 406 (994)
Q Consensus 328 ~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~~~~~ 406 (994)
.++.++.||.|++||+ +++.+..+.+|..+|.+|+|+|+|+ +|++++.+|+ |+|||+...
T Consensus 177 -------------~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~---- 237 (383)
T 3ei3_B 177 -------------MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDAT-VKLWDLRNI---- 237 (383)
T ss_dssp -------------EEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSE-EEEEEGGGC----
T ss_pred -------------EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCE-EEEEeCCCC----
Confidence 1124567899999999 5778899999999999999999999 9999999665 999998631
Q ss_pred CCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEEEEeCCCeEEEEecCCCCCCccccccc
Q 001935 407 GSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (994)
Q Consensus 407 ~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSp-Dg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~ 473 (994)
......+..+ + +...|.+++|+| |+++|++++.||+|+||++........+..|.
T Consensus 238 ---------~~~~~~~~~~--~-~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 238 ---------KDKNSYIAEM--P-HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp ---------CSTTCEEEEE--E-CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred ---------CcccceEEEe--c-CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 0011345554 3 456899999999 99999999999999999998876666665553
No 97
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.80 E-value=7.1e-18 Score=200.96 Aligned_cols=253 Identities=17% Similarity=0.122 Sum_probs=181.1
Q ss_pred ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEE
Q 001935 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (994)
Q Consensus 97 v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVr 176 (994)
....+..|.++|.++++.|++ ++||+.+. +++|+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~-------------~~la~~~~---------------------------------~g~v~ 38 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTE-------------PWVLTTLY---------------------------------SGRVE 38 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSS-------------SEEEEEET---------------------------------TSEEE
T ss_pred cceeeecCCCceEEEEECCCC-------------CEEEEEeC---------------------------------CCEEE
Confidence 467788999999999999865 57775321 36899
Q ss_pred EEECCCCeEEEEEeC-CCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEE
Q 001935 177 FYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAV 252 (994)
Q Consensus 177 LWDlktge~V~tL~f-~S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAl 252 (994)
|||+.+++.+.++.. ..+|.+++|++ ++|+++. ++.|++||+.+++.+.++..|..+ ...+++
T Consensus 39 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-------------v~~~~~ 105 (814)
T 3mkq_A 39 IWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY-------------IRSIAV 105 (814)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC-------------EEEEEE
T ss_pred EEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC-------------EEEEEE
Confidence 999999999999985 56899999988 5777765 568999999999998888766542 245777
Q ss_pred cc--cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCC
Q 001935 253 GP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (994)
Q Consensus 253 gp--RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~ 328 (994)
++ ++|+.++. .+.+|+...- ..+. +.+..+.. ....
T Consensus 106 s~~~~~l~~~~~dg~i~vw~~~~~------------------~~~~----------------~~~~~~~~------~v~~ 145 (814)
T 3mkq_A 106 HPTKPYVLSGSDDLTVKLWNWENN------------------WALE----------------QTFEGHEH------FVMC 145 (814)
T ss_dssp CSSSSEEEEEETTSEEEEEEGGGT------------------SEEE----------------EEEECCSS------CEEE
T ss_pred eCCCCEEEEEcCCCEEEEEECCCC------------------ceEE----------------EEEcCCCC------cEEE
Confidence 76 67776654 4667763100 0000 00100000 0001
Q ss_pred ccCCC-ccccccccccccCCCCeEEEEECCCCcEEEEeccCC-CCeEEEEECC--CCCEEEEEEcCCCeEEEEeCCCCcc
Q 001935 329 VSPNS-VWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT-SPISALCFDP--SGTLLVTASVYGNNINIFRIMPSCM 404 (994)
Q Consensus 329 ~s~s~-~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHt-spIsaLaFSP--dGtlLATAS~dGt~IrVwdi~p~~~ 404 (994)
..+++ +.. .++.+..||.|++||+.++.....+..|. .+|.+++|+| +|.+|++++.+|+ |++|++..
T Consensus 146 ~~~~p~~~~----~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~--- 217 (814)
T 3mkq_A 146 VAFNPKDPS----TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQT--- 217 (814)
T ss_dssp EEEETTEEE----EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETTT---
T ss_pred EEEEcCCCC----EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECCC---
Confidence 11122 111 24567789999999999888777777665 8999999999 9999999999665 99999853
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcccccc
Q 001935 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTL 472 (994)
Q Consensus 405 ~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H 472 (994)
+ ..+..+. ++ ...|.+++|+||+++|++++.||+|+||++........+..|
T Consensus 218 ----~----------~~~~~~~-~~-~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 218 ----K----------SCVATLE-GH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp ----T----------EEEEEEE-CC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred ----C----------cEEEEEc-CC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 2 3555553 43 457999999999999999999999999999875544444444
No 98
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.79 E-value=1.7e-16 Score=174.82 Aligned_cols=226 Identities=8% Similarity=0.034 Sum_probs=165.4
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCC
Q 001935 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (994)
Q Consensus 74 ~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~ 152 (994)
++++++++..++ +++||+. .++....+..|...+..+++.|+. .+|++...
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~-------------- 231 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLK-TLAYKATVDLTGKWSKILLYDPIR-------------DLVYCSNW-------------- 231 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETT-TCCEEEEEECSSSSEEEEEEETTT-------------TEEEEEET--------------
T ss_pred CCEEEEEECCCCEEEEEECC-CceEEEEEcCCCCCeeEEEEcCCC-------------CEEEEEec--------------
Confidence 567888887755 9999995 466767777788899999999865 24444321
Q ss_pred ccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe---------CCeEEEEECCCC
Q 001935 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL---------ATQIYCFDALTL 221 (994)
Q Consensus 153 ~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVgl---------~~~I~IwDa~Tl 221 (994)
.+++|++||+++++.+..+.....+.++++++ +.|+++. ++.|++||+.+.
T Consensus 232 ------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~ 293 (433)
T 3bws_A 232 ------------------ISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE 293 (433)
T ss_dssp ------------------TTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred ------------------CCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence 13689999999999999988888899999987 4666655 558999999988
Q ss_pred ceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhh
Q 001935 222 ENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH 301 (994)
Q Consensus 222 e~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~ds 301 (994)
+.+..+.. +. .++.+++.. ++..+.
T Consensus 294 ~~~~~~~~-~~--------------------~~~~~~~~~---------------------------~g~~l~------- 318 (433)
T 3bws_A 294 KLIDTIGP-PG--------------------NKRHIVSGN---------------------------TENKIY------- 318 (433)
T ss_dssp EEEEEEEE-EE--------------------CEEEEEECS---------------------------STTEEE-------
T ss_pred cEEeeccC-CC--------------------CcceEEECC---------------------------CCCEEE-------
Confidence 76554421 10 011222322 111111
Q ss_pred hhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC
Q 001935 302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG 381 (994)
Q Consensus 302 sk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdG 381 (994)
+.+..++.|++||+.+++.+..+. |...+.+++|+|+|
T Consensus 319 -----------------------------------------~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg 356 (433)
T 3bws_A 319 -----------------------------------------VSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDG 356 (433)
T ss_dssp -----------------------------------------EEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTS
T ss_pred -----------------------------------------EEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCC
Confidence 123568899999999998888776 67889999999999
Q ss_pred CEEEEEEcCC--------------CeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEE
Q 001935 382 TLLVTASVYG--------------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIA 447 (994)
Q Consensus 382 tlLATAS~dG--------------t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LA 447 (994)
++|++++.+. ..|++||+.. + ..+..+.. ...+.+++|+||+++|+
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-------~----------~~~~~~~~---~~~~~~~~~s~dg~~l~ 416 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-------D----------TVKEFWEA---GNQPTGLDVSPDNRYLV 416 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT-------T----------EEEEEEEC---SSSEEEEEECTTSCEEE
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCC-------C----------cEEEEecC---CCCCceEEEcCCCCEEE
Confidence 9999888742 2699999853 3 34555543 24689999999999999
Q ss_pred EEeC-CCeEEEEecCC
Q 001935 448 IVSS-KGTCHVFVLSP 462 (994)
Q Consensus 448 sgS~-dGTVhIw~I~~ 462 (994)
+++. +++|+||+++.
T Consensus 417 ~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 417 ISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEETTTTEEEEEEETT
T ss_pred EEECCCCeEEEEEecC
Confidence 8875 99999999864
No 99
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.79 E-value=4.1e-19 Score=192.04 Aligned_cols=220 Identities=12% Similarity=0.130 Sum_probs=142.0
Q ss_pred eEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEE
Q 001935 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (994)
Q Consensus 98 ~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrL 177 (994)
.+++..++++|.++++.|++ .+||+ +. .+++|+|
T Consensus 4 ~~~~~~~~~~v~~~~~s~~g-------------~~l~~--~~-------------------------------~d~~i~i 37 (377)
T 3dwl_C 4 SQVLHILPKPSYEHAFNSQR-------------TEFVT--TT-------------------------------ATNQVEL 37 (377)
T ss_dssp EEEEEECSSCCSCCEECSSS-------------SEEEC--CC-------------------------------SSSCBCE
T ss_pred ceeEecCCCcEEEEEECCCC-------------CEEEE--ec-------------------------------CCCEEEE
Confidence 35566678899999999865 35553 11 1368999
Q ss_pred EECCCC--eEEEEEeC-CCcEEEEEecC--CeEEEEe-CCeEEEEECCCCc---eeEEEeecCCccccCCCccccccCcc
Q 001935 178 YSFQSH--CYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLE---NKFSVLTYPVPQLAGQGAVGINVGYG 248 (994)
Q Consensus 178 WDlktg--e~V~tL~f-~S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle---~l~tL~t~p~p~~~~~g~~~vnv~~g 248 (994)
||+.++ +.+.++.. ...|.++++++ ++|+++. ++.|++||+.+.+ ....+..|..+
T Consensus 38 w~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~--------------- 102 (377)
T 3dwl_C 38 YEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRA--------------- 102 (377)
T ss_dssp EEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSC---------------
T ss_pred EEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCc---------------
Confidence 999998 67777764 46899999987 5677655 5689999998766 22222222110
Q ss_pred ceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCC
Q 001935 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (994)
Q Consensus 249 plAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~ 328 (994)
...++|. |++.
T Consensus 103 -----v~~~~~~---------------------------~~~~------------------------------------- 113 (377)
T 3dwl_C 103 -----ATFVRWS---------------------------PNED------------------------------------- 113 (377)
T ss_dssp -----EEEEECC---------------------------TTSS-------------------------------------
T ss_pred -----eEEEEEC---------------------------CCCC-------------------------------------
Confidence 0111111 1111
Q ss_pred ccCCCccccccccccccCCCCeEEEEECCCCc---EEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcc
Q 001935 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 404 (994)
Q Consensus 329 ~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~---~i~~~~a-HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~ 404 (994)
.++.++.||.|+|||+.+++ .+..+.. |..+|.+|+|+|+|++||+++.+|+ |+||++.....
T Consensus 114 ------------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~ 180 (377)
T 3dwl_C 114 ------------KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK-AYVLSAYVRDV 180 (377)
T ss_dssp ------------CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC-EEEEEECCSSC
T ss_pred ------------EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE-EEEEEEEeccc
Confidence 12245679999999999887 4778888 9999999999999999999999776 99999852100
Q ss_pred cCCCCCCccccCC---cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 405 RSGSGNHKYDWNS---SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 405 ~~~sG~~~~~~~~---s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
.. ......|.. ....+..+ + +...|.+++|+||+++|++++.||+|+||++.....
T Consensus 181 ~~--~~~~~~~~~~~~~~~~~~~~--~-~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 181 DA--KPEASVWGSRLPFNTVCAEY--P-SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp C---CCCSCSSCSCCCEEEEEECC--C-CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred CC--Cccccccccccchhhhhhcc--c-CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 00 000000111 12344444 3 456799999999999999999999999999987655
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.3e-17 Score=176.03 Aligned_cols=212 Identities=14% Similarity=0.157 Sum_probs=149.6
Q ss_pred cceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEE
Q 001935 96 NFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAV 175 (994)
Q Consensus 96 ~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tV 175 (994)
.+..++..|.++|.++++.|++ .+||+.+. +++|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~-------------~~l~~~~~---------------------------------dg~i 35 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYG-------------KRLATCSS---------------------------------DKTI 35 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSS-------------SEEEEEET---------------------------------TSCE
T ss_pred CccEEecCCcccEEEEEEcCCC-------------CEEEEEEC---------------------------------CCcE
Confidence 4567889999999999999865 46665321 3679
Q ss_pred EEEECC--CCeEEEEEeC-CCcEEEEEec----CCeEEEEe-CCeEEEEECCCCc--eeEEEeecCCccccCCCcccccc
Q 001935 176 RFYSFQ--SHCYEHVLRF-RSSVCMVRCS----PRIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINV 245 (994)
Q Consensus 176 rLWDlk--tge~V~tL~f-~S~V~sV~~S----~~iLAVgl-~~~I~IwDa~Tle--~l~tL~t~p~p~~~~~g~~~vnv 245 (994)
+|||+. +++.+..+.. ...|.+++++ .++|+++. ++.|++||+.+.+ .+..+..+..+
T Consensus 36 ~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------------ 103 (379)
T 3jrp_A 36 KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS------------ 103 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC------------
T ss_pred EEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcc------------
Confidence 999998 5667777764 4689999997 46777655 5689999998876 33333322221
Q ss_pred CccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCC
Q 001935 246 GYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGS 325 (994)
Q Consensus 246 ~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s 325 (994)
. ..+++..+. .+.
T Consensus 104 -v-------~~~~~~~~~--------------------------~~~--------------------------------- 116 (379)
T 3jrp_A 104 -V-------NSVQWAPHE--------------------------YGP--------------------------------- 116 (379)
T ss_dssp -E-------EEEEECCGG--------------------------GCS---------------------------------
T ss_pred -e-------EEEEeCCCC--------------------------CCC---------------------------------
Confidence 0 112222110 000
Q ss_pred CCCccCCCccccccccccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEECC-------------CCCEEEEEEcC
Q 001935 326 SSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDP-------------SGTLLVTASVY 390 (994)
Q Consensus 326 ~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~--~i~~~~aHtspIsaLaFSP-------------dGtlLATAS~d 390 (994)
.++.+..||.|+|||+.++. ....+.+|..+|.+++|+| +|.+|++++.+
T Consensus 117 ---------------~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 181 (379)
T 3jrp_A 117 ---------------LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 181 (379)
T ss_dssp ---------------EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT
T ss_pred ---------------EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC
Confidence 11245679999999999873 4457789999999999999 79999999997
Q ss_pred CCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC---CCEEEEEeCCCeEEEEecCCC
Q 001935 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY---SQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 391 Gt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpD---g~~LAsgS~dGTVhIw~I~~~ 463 (994)
|+ |+|||+... . .....+..+ .+ +...|.+++|+|| +++|++++.||+|+||++...
T Consensus 182 g~-i~i~d~~~~-------~------~~~~~~~~~-~~-h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 182 NL-VKIWKYNSD-------A------QTYVLESTL-EG-HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp SC-EEEEEEETT-------T------TEEEEEEEE-CC-CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred Ce-EEEEEecCC-------C------cceeeEEEE-ec-ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 76 999998531 0 111233444 34 3467999999999 999999999999999998764
No 101
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.79 E-value=3e-18 Score=192.12 Aligned_cols=112 Identities=18% Similarity=0.288 Sum_probs=87.7
Q ss_pred ccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 344 DMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
+++.||.|+|||+.. +.+..+.+|..+|.+|+|+|+|. +||+++.||+ |+|||+.... . . ..+
T Consensus 226 ~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~-v~iwd~~~~~-----~--------~-~~~ 289 (435)
T 4e54_B 226 TGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWDLRQVR-----G--------K-ASF 289 (435)
T ss_dssp EECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB-CCEEETTTCC-----S--------S-SCC
T ss_pred EEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcce-eeEEeccccc-----c--------c-ceE
Confidence 457899999999875 56788999999999999999986 7889999665 9999986420 0 0 011
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccccccc
Q 001935 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~ 473 (994)
....+ +...|.+|+|+|||++|++++.||+|+||++........+..|.
T Consensus 290 -~~~~~-h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 290 -LYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP 338 (435)
T ss_dssp -SBCCB-CSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred -EEeee-ccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence 11123 34679999999999999999999999999998876666665554
No 102
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.78 E-value=4.4e-18 Score=189.16 Aligned_cols=257 Identities=13% Similarity=0.086 Sum_probs=137.0
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcce-----EeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCC
Q 001935 74 FKQVLLLGYQNG-FQVLDVEDASNFN-----ELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPG 147 (994)
Q Consensus 74 ~~~vL~lGy~~G-~qVWDv~~~g~v~-----ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~ 147 (994)
..++|++|..++ ++|||+.. +++. ..+.+|.++|..|+|.|..... ......+||.++
T Consensus 100 ~~~~las~~~d~~v~lw~~~~-~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~-----~~~d~~~las~s---------- 163 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKN-ETIITQHVLGGKSGHHNFVNDIDIADVYSAD-----NRLAEQVIASVG---------- 163 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEET-TEEEEEEEECTTTSCSSCEEEEEEEEEECTT-----CSEEEEEEEEEE----------
T ss_pred CCCEEEEEeCCCcEEEEECCC-CccceeeeecccCCCCCceEEEEEccccccc-----cCCCCCEEEEEE----------
Confidence 456788887665 99999964 4332 2367899999999999842110 011123666532
Q ss_pred CCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEE-EEeCCCcEEEEEecC---CeEEEEe-CCeEEEEECCCCc
Q 001935 148 QNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEH-VLRFRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLE 222 (994)
Q Consensus 148 q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~-tL~f~S~V~sV~~S~---~iLAVgl-~~~I~IwDa~Tle 222 (994)
.+++|||||++++.++. .+.+++.|.+|+|+| ++|+++. ++.|++||+.+.+
T Consensus 164 -----------------------~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~ 220 (393)
T 4gq1_A 164 -----------------------DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL 220 (393)
T ss_dssp -----------------------TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred -----------------------CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence 14799999998876554 457889999999998 3577655 5689999999887
Q ss_pred eeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCee-eccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhh
Q 001935 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLL-LSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEH 301 (994)
Q Consensus 223 ~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~-iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~ds 301 (994)
....+..++... . ...+... ..... ...
T Consensus 221 ~~~~~~~~~~~~---------~--~~~~s~~-------~~~~~~~~~--------------------------------- 249 (393)
T 4gq1_A 221 SAEENSQTELVK---------N--PWLLTLN-------TLPLVNTCH--------------------------------- 249 (393)
T ss_dssp ----------CS---------C--CCSEEEE-------SGGGC-------------------------------------
T ss_pred ccccccccCCcc---------c--ceEEecc-------cccceeeee---------------------------------
Confidence 665544332210 0 0001111 00000 000
Q ss_pred hhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCC-
Q 001935 302 SKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPS- 380 (994)
Q Consensus 302 sk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPd- 380 (994)
..|....+... ... .++++ .++++..|+.++|||+..++....+..|...+..+.|.|+
T Consensus 250 ----~~~~~~~v~~v--~~~----------~~dg~----~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~ 309 (393)
T 4gq1_A 250 ----SSGIASSLANV--RWI----------GSDGS----GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNV 309 (393)
T ss_dssp ------CCSSSCSEE--EEE----------TTTTC----EEEEECTTSEEEEEEC-------------------CCSCSE
T ss_pred ----cccccccceee--eee----------cCCCC----EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccc
Confidence 00000000000 000 01111 2346678999999999988877777777777666655553
Q ss_pred -------------------CCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 001935 381 -------------------GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (994)
Q Consensus 381 -------------------GtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSp 441 (994)
+.++++++.+| .|+|||+.. | ..+..+.. +...|++|+|||
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg-~V~lwd~~~-------~----------~~~~~~~~--~~~~V~svafsp 369 (393)
T 4gq1_A 310 QGISLFPSLLGACPHPRYMDYFATAHSQHG-LIQLINTYE-------K----------DSNSIPIQ--LGMPIVDFCWHQ 369 (393)
T ss_dssp EEECSSCCSSCCEECSSCTTEEEEEETTTT-EEEEEETTC-------T----------TCCEEEEE--CSSCEEEEEECT
T ss_pred ccccccCcceeEEEccCCCCEEEEEECCCC-EEEEEECCC-------C----------cEEEEecC--CCCcEEEEEEcC
Confidence 34666777755 599999864 2 12333332 235799999999
Q ss_pred CCCEEEEEeCCCeEEEEecC
Q 001935 442 YSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 442 Dg~~LAsgS~dGTVhIw~I~ 461 (994)
||++||+++.+|. .||.+.
T Consensus 370 dG~~LA~as~~Gv-~lvrL~ 388 (393)
T 4gq1_A 370 DGSHLAIATEGSV-LLTRLM 388 (393)
T ss_dssp TSSEEEEEESSEE-EEEEEG
T ss_pred CCCEEEEEeCCCe-EEEEEe
Confidence 9999999998774 566653
No 103
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.78 E-value=6.4e-18 Score=181.78 Aligned_cols=209 Identities=14% Similarity=0.135 Sum_probs=141.5
Q ss_pred ceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEE
Q 001935 97 FNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVR 176 (994)
Q Consensus 97 v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVr 176 (994)
++.++..|.++|.+++|.|++ .+||..+ .+++|+
T Consensus 5 ~~~~~~~H~~~V~~v~~s~~g-------------~~lasgs---------------------------------~D~~v~ 38 (316)
T 3bg1_A 5 INTVDTSHEDMIHDAQMDYYG-------------TRLATCS---------------------------------SDRSVK 38 (316)
T ss_dssp ---------CCEEEEEECGGG-------------CEEEEEE---------------------------------TTTEEE
T ss_pred eeeecccccCeEEEeeEcCCC-------------CEEEEEe---------------------------------CCCeEE
Confidence 345677899999999999765 3666532 247999
Q ss_pred EEECCCCe--EEEEEeC-CCcEEEEEecC----CeEEEEe-CCeEEEEECCCCc--eeEEEeecCCccccCCCccccccC
Q 001935 177 FYSFQSHC--YEHVLRF-RSSVCMVRCSP----RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVG 246 (994)
Q Consensus 177 LWDlktge--~V~tL~f-~S~V~sV~~S~----~iLAVgl-~~~I~IwDa~Tle--~l~tL~t~p~p~~~~~g~~~vnv~ 246 (994)
|||+++++ ++.+++. ...|++|+|++ ++|+++. ++.|++||+.+.+ ...++..|..+
T Consensus 39 lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~------------- 105 (316)
T 3bg1_A 39 IFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSS------------- 105 (316)
T ss_dssp EEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSC-------------
T ss_pred EEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCc-------------
Confidence 99999875 4667764 46999999963 5677655 6689999998753 34444333321
Q ss_pred ccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCC
Q 001935 247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (994)
Q Consensus 247 ~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~ 326 (994)
. +.|+|.++. .+.
T Consensus 106 V-------~~v~~~p~~--------------------------~g~---------------------------------- 118 (316)
T 3bg1_A 106 V-------NSVCWAPHD--------------------------YGL---------------------------------- 118 (316)
T ss_dssp C-------CEEEECCTT--------------------------TCS----------------------------------
T ss_pred e-------EEEEECCCC--------------------------CCc----------------------------------
Confidence 0 112222110 011
Q ss_pred CCccCCCccccccccccccCCCCeEEEEECCCCc---EEEEeccCCCCeEEEEECCC-----------------CCEEEE
Q 001935 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IISQFKAHTSPISALCFDPS-----------------GTLLVT 386 (994)
Q Consensus 327 s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~---~i~~~~aHtspIsaLaFSPd-----------------GtlLAT 386 (994)
.+++++.||.|+|||+..+. ....+.+|..+|.+++|+|+ |++||+
T Consensus 119 --------------~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 184 (316)
T 3bg1_A 119 --------------ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS 184 (316)
T ss_dssp --------------CEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEEC
T ss_pred --------------EEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEE
Confidence 12356789999999998763 24667899999999999998 579999
Q ss_pred EEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC----CEEEEEeCCCeEEEEecCC
Q 001935 387 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----QWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 387 AS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg----~~LAsgS~dGTVhIw~I~~ 462 (994)
++.||+ |+||++... + ....+.+| +|+ ...|++++|+||+ ++||+++.||+|+||++..
T Consensus 185 gs~D~~-v~lWd~~~~------~--------~~~~~~~l-~~h-~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 185 GGCDNL-IKLWKEEED------G--------QWKEEQKL-EAH-SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp CBTTSB-CCEEEECTT------S--------CEEEEECC-BCC-SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred ecCCCe-EEEEEeCCC------C--------ccceeeec-ccC-CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 999765 999998421 1 11244444 454 4679999999997 8999999999999999865
No 104
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.78 E-value=4e-17 Score=180.14 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=80.5
Q ss_pred CCeEEEEECCCCcEE--EEeccCCCCeEEEEECCCCCEEEEEEcCCC---eEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 348 AGIVVVKDFVTRAII--SQFKAHTSPISALCFDPSGTLLVTASVYGN---NINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 348 dG~V~VwDl~s~~~i--~~~~aHtspIsaLaFSPdGtlLATAS~dGt---~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
++.+++|+..+++.+ ..+..|...|.+++|+|+|++|++++.++. .+++|++... .......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~-------------~~~~~~~ 262 (365)
T 4h5i_A 196 GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSG-------------NTSVLRS 262 (365)
T ss_dssp SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETT-------------EEEEEEE
T ss_pred ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccc-------------eecceee
Confidence 445667777776654 345679999999999999999999998764 5888987531 0001122
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccc-cccc
Q 001935 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGF-QTLS 473 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~-~~H~ 473 (994)
..+. + +...|++|+|||||++||+|+.|++|+||++........+ +.|.
T Consensus 263 ~~~~-~-~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~ 312 (365)
T 4h5i_A 263 KQVT-N-RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHS 312 (365)
T ss_dssp EEEE-S-SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSS
T ss_pred eeec-C-CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCccc
Confidence 3332 3 3356999999999999999999999999999875444343 5564
No 105
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.78 E-value=4.7e-17 Score=172.82 Aligned_cols=262 Identities=11% Similarity=0.057 Sum_probs=163.6
Q ss_pred CCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEec-CCCCCCCCCCccccCcE
Q 001935 55 LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQP-FPVKDDGCEGFRKLHPF 132 (994)
Q Consensus 55 ~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP-~p~~s~~~D~F~~srpL 132 (994)
+.+.|..+.|..- ....+++|++|..+| ++|||+. .++....+..|.++|.++++.| ++ .+
T Consensus 68 ~~~~v~~~~~~~~---~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~-------------~~ 130 (366)
T 3k26_A 68 ADENFYTCAWTYD---SNTSHPLLAVAGSRGIIRIINPI-TMQCIKHYVGHGNAINELKFHPRDP-------------NL 130 (366)
T ss_dssp TTCCEEEEEEEEC---TTTCCEEEEEEETTCEEEEECTT-TCCEEEEEESCCSCEEEEEECSSCT-------------TE
T ss_pred CCCcEEEEEeccC---CCCCCCEEEEecCCCEEEEEEch-hceEeeeecCCCCcEEEEEECCCCC-------------CE
Confidence 5677888888741 111256888888776 8999995 4677777888999999999998 44 35
Q ss_pred EEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEE----eCCCcEEEEEecC--CeEE
Q 001935 133 LLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVL----RFRSSVCMVRCSP--RIVA 206 (994)
Q Consensus 133 LAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL----~f~S~V~sV~~S~--~iLA 206 (994)
|++.+ .+++|++||+++++.+..+ .+...|.++++++ +.|+
T Consensus 131 l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 177 (366)
T 3k26_A 131 LLSVS---------------------------------KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 177 (366)
T ss_dssp EEEEE---------------------------------TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEE
T ss_pred EEEEe---------------------------------CCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEE
Confidence 56432 1368999999999999998 3557999999987 4666
Q ss_pred EEe-CCeEEEEECCCCceeEEEeec--CCcc--ccCCC--------c---cccccCccceEEcccEEEEccC--Ceeecc
Q 001935 207 VGL-ATQIYCFDALTLENKFSVLTY--PVPQ--LAGQG--------A---VGINVGYGPMAVGPRWLAYASN--TLLLSN 268 (994)
Q Consensus 207 Vgl-~~~I~IwDa~Tle~l~tL~t~--p~p~--~~~~g--------~---~~vnv~~gplAlgpRwLAyas~--~~~iwd 268 (994)
++. ++.|++||+.+.+....+... -.|. ..... . ..-......+++..++|+.++. .+.+|+
T Consensus 178 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd 257 (366)
T 3k26_A 178 SCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWK 257 (366)
T ss_dssp EEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEE
T ss_pred EecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEe
Confidence 655 568999999987654333210 0000 00000 0 0000012345666777777654 466787
Q ss_pred CCcc--CCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCc--cccccccccc
Q 001935 269 SGRL--SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSV--WKVGRHAGAD 344 (994)
Q Consensus 269 ~G~~--s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~--~k~g~~~~as 344 (994)
.... ....+. +...... ..+.+..+. .....+.+++. .+ .++.
T Consensus 258 ~~~~~~~~~~~~---------~~~~~~~--------------~~~~~~~~~------~~v~~~~~s~~~~~~----~l~~ 304 (366)
T 3k26_A 258 PGKMEDDIDKIK---------PSESNVT--------------ILGRFDYSQ------CDIWYMRFSMDFWQK----MLAL 304 (366)
T ss_dssp ESSTTCCGGGCC---------TTCCCEE--------------EEEEEECSS------CCSSCCCCEECTTSS----EEEE
T ss_pred CCCccccccccc---------cCCcchh--------------eeccccccC------CcEEEEEEcCCCCCc----EEEE
Confidence 4211 000000 0000000 001111111 11112222232 32 3457
Q ss_pred cCCCCeEEEEECCCCc----EEEEeccC--CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCC
Q 001935 345 MDNAGIVVVKDFVTRA----IISQFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~----~i~~~~aH--tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (994)
++.||.|+|||+.+++ .+..+.+| ..+|.+|+|+|+|++||+++.+|+ |+|||+.
T Consensus 305 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~ 365 (366)
T 3k26_A 305 GNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS-IWRWDRL 365 (366)
T ss_dssp ECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEEEC-
T ss_pred EecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCE-EEEEEec
Confidence 7899999999999875 55688888 799999999999999999999775 9999974
No 106
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=8.3e-17 Score=199.43 Aligned_cols=250 Identities=12% Similarity=0.101 Sum_probs=168.7
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
.+|++.|..+.|+. ++++|++|..+| ++|||.. ..++...+ .|.++|..|+|.| + .
T Consensus 14 ~gh~~~V~~lafsp-------dg~~lAsgs~Dg~I~lw~~~-~~~~~~~~-~~~~~V~~l~fsp-g-------------~ 70 (902)
T 2oaj_A 14 YGMSSKPIAAAFDF-------TQNLLAIATVTGEVHIYGQQ-QVEVVIKL-EDRSAIKEMRFVK-G-------------I 70 (902)
T ss_dssp EECSSCEEEEEEET-------TTTEEEEEETTSEEEEECST-TCEEEEEC-SSCCCEEEEEEET-T-------------T
T ss_pred cCCCCCcEEEEECC-------CCCEEEEEeCCCEEEEEeCC-CcEEEEEc-CCCCCEEEEEEcC-C-------------C
Confidence 35788999999983 567899998877 8999984 33333332 3678999999997 3 2
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL 209 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVgl 209 (994)
+|+.++. +++|+|||++++++++++.++..|.++++++ ++|++|.
T Consensus 71 ~L~S~s~---------------------------------D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs 117 (902)
T 2oaj_A 71 YLVVINA---------------------------------KDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGL 117 (902)
T ss_dssp EEEEEET---------------------------------TCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEE
T ss_pred EEEEEEC---------------------------------cCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEc
Confidence 5665321 4789999999999999999889999999998 5777766
Q ss_pred -CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCC
Q 001935 210 -ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSP 288 (994)
Q Consensus 210 -~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp 288 (994)
++.|++||+.+.+.. .+.. +.. |.. ...++....++.++.++|
T Consensus 118 ~dg~V~lwd~~~~~~~-~~~i-~~~---------------------------------~~~-~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 118 QNGSMIVYDIDRDQLS-SFKL-DNL---------------------------------QKS-SFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp TTSCEEEEETTTTEEE-EEEE-CCH---------------------------------HHH-HTCSSSCCCCCCEEEEET
T ss_pred CCCcEEEEECCCCccc-ccee-ccc---------------------------------ccc-ccccccCCCCeEEEEEcc
Confidence 557999999887642 1111 000 000 000000000111111222
Q ss_pred CCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC
Q 001935 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH 368 (994)
Q Consensus 289 ~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aH 368 (994)
+++. .++.+..||.| |||+.+++.+..|..|
T Consensus 162 ~~~~------------------------------------------------~l~~g~~dg~v-lWd~~~~~~~~~~~~~ 192 (902)
T 2oaj_A 162 RDIG------------------------------------------------TVLISYEYVTL-TYSLVENEIKQSFIYE 192 (902)
T ss_dssp TEEE------------------------------------------------EEEEECSSCEE-EEETTTTEEEEEECCC
T ss_pred CCCC------------------------------------------------EEEEEeCCCcE-EEECCCCceEEEEecc
Confidence 1110 12245678999 9999999988888766
Q ss_pred ------------------CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEE--Ee--
Q 001935 369 ------------------TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK--LH-- 426 (994)
Q Consensus 369 ------------------tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~--L~-- 426 (994)
..+|.+++|+|+|++|||++.||+ |+|||+.. | +.+.. +.
T Consensus 193 ~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd~~~-------g----------~~~~~r~l~~~ 254 (902)
T 2oaj_A 193 LPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWDANS-------G----------HMIMARTVFET 254 (902)
T ss_dssp BCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEETTT-------C----------CEEEEECSSCS
T ss_pred cCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCC-------C----------cEEEEEeeccc
Confidence 578999999999999999999776 99999853 3 23332 21
Q ss_pred ccc------------ccccEEEEEEc----cCC-CEEEEEeCC-----CeEEEEecC
Q 001935 427 RGI------------TSATIQDICFS----HYS-QWIAIVSSK-----GTCHVFVLS 461 (994)
Q Consensus 427 RG~------------t~a~I~sIaFS----pDg-~~LAsgS~d-----GTVhIw~I~ 461 (994)
.++ +...|++++|+ ||+ +.|++|+.+ .++++|++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 255 EINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp CTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred ccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence 111 23469999995 554 577788766 378899864
No 107
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.78 E-value=2.5e-17 Score=174.48 Aligned_cols=253 Identities=12% Similarity=0.061 Sum_probs=162.6
Q ss_pred eEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEE
Q 001935 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (994)
Q Consensus 98 ~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrL 177 (994)
.++...|.++|.++++.|++ .+|++.+ .+++|+|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~-------------~~l~~~~---------------------------------~d~~v~i 37 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSK-------------SLLLITS---------------------------------WDGSLTV 37 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGG-------------TEEEEEE---------------------------------TTSEEEE
T ss_pred eecccCCCCcEEEEEEcCCC-------------CEEEEEc---------------------------------CCCeEEE
Confidence 45667899999999999864 3566532 1368999
Q ss_pred EECCCCe----EEEEEeCCCcEEEEEecC--C-eEEEEe-CCeEEEEEC-CCCceeEEEee--cCCccccCCCccccccC
Q 001935 178 YSFQSHC----YEHVLRFRSSVCMVRCSP--R-IVAVGL-ATQIYCFDA-LTLENKFSVLT--YPVPQLAGQGAVGINVG 246 (994)
Q Consensus 178 WDlktge----~V~tL~f~S~V~sV~~S~--~-iLAVgl-~~~I~IwDa-~Tle~l~tL~t--~p~p~~~~~g~~~vnv~ 246 (994)
||+.+++ ......+...|.++++++ + +|+++. ++.|++||+ .+.+. ..+.. |..+
T Consensus 38 w~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~------------- 103 (342)
T 1yfq_A 38 YKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLG------------- 103 (342)
T ss_dssp EEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSC-------------
T ss_pred EEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCc-------------
Confidence 9999887 555556778999999975 5 677766 568999999 77654 44444 4331
Q ss_pred ccceEEcc-cEEEEccC--CeeeccCCccCCCc----CCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeecccccc
Q 001935 247 YGPMAVGP-RWLAYASN--TLLLSNSGRLSPQN----LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQE 319 (994)
Q Consensus 247 ~gplAlgp-RwLAyas~--~~~iwd~G~~s~qs----ltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~ 319 (994)
...+++.+ ++|+.++. .+.+|+........ .. +. +++.
T Consensus 104 v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~-----------------------------~~~~----- 148 (342)
T 1yfq_A 104 ICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-NS-----------------------------NNTK----- 148 (342)
T ss_dssp EEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES-CS-----------------------------SSSS-----
T ss_pred eEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCC-ee-----------------------------eEEe-----
Confidence 23455653 66666553 35677631100000 00 00 0000
Q ss_pred ccCCCCCCCccCCCccccccccccccCCCCeEEEEECCC-Cc--EEEEeccCCCCeEEEEECC-CCCEEEEEEcCCCeEE
Q 001935 320 LLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RA--IISQFKAHTSPISALCFDP-SGTLLVTASVYGNNIN 395 (994)
Q Consensus 320 l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s-~~--~i~~~~aHtspIsaLaFSP-dGtlLATAS~dGt~Ir 395 (994)
.......+.+++.. ++.+..+|.|++||+.+ +. .......|..+|.+++|+| +|++|++++.+|. |+
T Consensus 149 --~~~~v~~~~~~~~~------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~ 219 (342)
T 1yfq_A 149 --VKNKIFTMDTNSSR------LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VA 219 (342)
T ss_dssp --SCCCEEEEEECSSE------EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EE
T ss_pred --eCCceEEEEecCCc------EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc-EE
Confidence 00000011111211 34567899999999998 54 3445567899999999999 9999999999665 99
Q ss_pred EEeCCCCcccCCCCCCccccCCcceEEEEEeccc-------ccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI-------TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 396 Vwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~-------t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
||++... +. ......++.+.... +...|.+++|+||+++|++++.||+|+||++.....
T Consensus 220 i~~~~~~------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 220 VEFFDDQ------GD-----DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp EEECCTT------CC-----STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred EEEEcCC------Cc-----ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH
Confidence 9998541 00 00001233342211 133799999999999999999999999999976543
No 108
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.77 E-value=1.4e-16 Score=177.75 Aligned_cols=274 Identities=15% Similarity=0.132 Sum_probs=185.2
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
.+|.+.|..+.|.. +. .|++|..+| ++|||+. .+.....+..|.++|.++.+.|.+ ...
T Consensus 159 ~~h~~~V~~l~~~~-------~~-~l~s~s~dg~i~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~-----------~~~ 218 (464)
T 3v7d_B 159 SGHDGGVWALKYAH-------GG-ILVSGSTDRTVRVWDIK-KGCCTHVFEGHNSTVRCLDIVEYK-----------NIK 218 (464)
T ss_dssp CCCSSCEEEEEECS-------TT-EEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEEEESS-----------SCE
T ss_pred eCCCcCEEEEEEcC-------CC-EEEEEeCCCCEEEEECC-CCcEEEEECCCCCccEEEEEecCC-----------CCC
Confidence 46788888888852 23 566666555 9999995 577778888899999999998643 123
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeE-----------------------EEE
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-----------------------EHV 188 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~-----------------------V~t 188 (994)
+|++.+ .+++|++||+++++. +..
T Consensus 219 ~l~s~s---------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 219 YIVTGS---------------------------------RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp EEEEEE---------------------------------TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred EEEEEc---------------------------------CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 555432 136799999998763 344
Q ss_pred EeC-CCcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccC--
Q 001935 189 LRF-RSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN-- 262 (994)
Q Consensus 189 L~f-~S~V~sV~~S~~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~-- 262 (994)
+.. ...|.++..+.++|+++. ++.|++||+.+++.+.++..|..+ ...+++.+ ++|+.++.
T Consensus 266 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~l~sg~~dg 332 (464)
T 3v7d_B 266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR-------------IYSTIYDHERKRCISASMDT 332 (464)
T ss_dssp ECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEEETTTTEEEEEETTS
T ss_pred ccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC-------------EEEEEEcCCCCEEEEEeCCC
Confidence 443 458889988888888766 568999999999988888765442 23466665 56766553
Q ss_pred CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccc
Q 001935 263 TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAG 342 (994)
Q Consensus 263 ~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~ 342 (994)
.+.+|+... +..+ +++..+.. ....+.+++ -.+
T Consensus 333 ~i~vwd~~~-------------------~~~~----------------~~~~~h~~------~v~~~~~~~------~~l 365 (464)
T 3v7d_B 333 TIRIWDLEN-------------------GELM----------------YTLQGHTA------LVGLLRLSD------KFL 365 (464)
T ss_dssp CEEEEETTT-------------------TEEE----------------EEECCCSS------CEEEEEECS------SEE
T ss_pred cEEEEECCC-------------------CcEE----------------EEEeCCCC------cEEEEEEcC------CEE
Confidence 467787310 1111 11111100 000111111 124
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
++++.||.|+|||+.++.....+ .|...+..++|+|+|++||+++ +| .|+||++.. | ..+
T Consensus 366 ~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg-~i~iwd~~~-------g----------~~~ 425 (464)
T 3v7d_B 366 VSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-EN-QFNIYNLRS-------G----------KLV 425 (464)
T ss_dssp EEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TT-EEEEEETTT-------C----------CEE
T ss_pred EEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CC-eEEEEECCC-------C----------cEE
Confidence 56789999999999998766555 3777899999999999999999 46 599999864 3 355
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
.++..+ +...|++++|+ +...+++++.+|.+.+|-++
T Consensus 426 ~~~~~~-~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 426 HANILK-DADQIWSVNFK-GKTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp ESCTTT-TCSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred ehhhcc-CCCcEEEEEec-CCEEEEEEEeCCeEEEEEee
Confidence 544344 35689999998 55666777788887777653
No 109
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.76 E-value=3.1e-17 Score=179.88 Aligned_cols=117 Identities=14% Similarity=0.212 Sum_probs=83.6
Q ss_pred cccCCCCe-EEEEECCCCcEEEEec-c-CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCC---CC-----CC
Q 001935 343 ADMDNAGI-VVVKDFVTRAIISQFK-A-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSG---SG-----NH 411 (994)
Q Consensus 343 as~s~dG~-V~VwDl~s~~~i~~~~-a-HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~---sG-----~~ 411 (994)
++++.||+ |+|||+.+++.+..|+ + |..+|.+|+|+|+|++||+++.+|+ |+||++........ .+ ..
T Consensus 211 ~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~~~~~~~~~~~~~~~~~~ 289 (355)
T 3vu4_A 211 ATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFNDQDNKRHALKGWINMKYF 289 (355)
T ss_dssp EEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCCSCCCSEETTTTEECCCC
T ss_pred EEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCCCCcccccccceeecccc
Confidence 45678998 9999999999999998 5 9999999999999999999999665 99999964200000 00 00
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 412 ~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
...|. ...+.+..+. ...+..++|++|+++|++++.||++++|++...+
T Consensus 290 ~~~~~---~~~~~~~~~~-~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 290 QSEWS---LCNFKLSVDK-HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCSSC---SEEEECCCCT-TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred ccccc---eeEEEeccCC-CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 00000 0112222221 1224669999999999999999999999987643
No 110
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.76 E-value=4.7e-16 Score=162.04 Aligned_cols=103 Identities=21% Similarity=0.213 Sum_probs=79.7
Q ss_pred ccCCCCeEEEEECCCCcEEEEec-------------cCCCCeEEEEECCC---CCEEEEEEcCCCeEEEEeCCCCcccCC
Q 001935 344 DMDNAGIVVVKDFVTRAIISQFK-------------AHTSPISALCFDPS---GTLLVTASVYGNNINIFRIMPSCMRSG 407 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~~i~~~~-------------aHtspIsaLaFSPd---GtlLATAS~dGt~IrVwdi~p~~~~~~ 407 (994)
.++.||.|+|||+.+++.+..+. .|...|.+++|+|+ +.+|++++.+|. +.+|+...
T Consensus 129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~------ 201 (351)
T 3f3f_A 129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKD------ 201 (351)
T ss_dssp EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTT------
T ss_pred EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCC------
Confidence 45679999999998876554443 68899999999998 999999999665 66666532
Q ss_pred CCCCccccCCcceEEEEEecccccccEEEEEEccCC----CEEEEEeCCCeEEEEecCCCC
Q 001935 408 SGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS----QWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 408 sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg----~~LAsgS~dGTVhIw~I~~~g 464 (994)
+ ....+..+ .+ +...|.+++|+|++ ++|++++.||+|+||++....
T Consensus 202 -~--------~~~~~~~~-~~-h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 251 (351)
T 3f3f_A 202 -G--------KLHVAAKL-PG-HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL 251 (351)
T ss_dssp -S--------CEEEEEEC-CC-CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC
T ss_pred -C--------ceeeeeec-CC-CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCc
Confidence 1 11234444 34 34679999999998 899999999999999997643
No 111
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.73 E-value=3.9e-16 Score=171.93 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=78.8
Q ss_pred cccCCCCeEEEEECCC-CcEEE-------EeccCCCCeEEEEECCCC-CEEEEEEcCCCeEEEEeCCCCcccCCCCCCcc
Q 001935 343 ADMDNAGIVVVKDFVT-RAIIS-------QFKAHTSPISALCFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (994)
Q Consensus 343 as~s~dG~V~VwDl~s-~~~i~-------~~~aHtspIsaLaFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~ 413 (994)
+++ .||.|+|||+.+ ++.+. .+.+|..+|.+|+|+|+| ++||+++.+|+ |+|||+.. +.
T Consensus 193 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~~~-------~~--- 260 (447)
T 3dw8_B 193 LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDMRA-------SA--- 260 (447)
T ss_dssp EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEETTT-------CS---
T ss_pred EEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEECcC-------Cc---
Confidence 355 699999999994 44444 367999999999999999 99999999776 99999864 11
Q ss_pred ccCCcceEEEEEeccccc-----------ccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 414 DWNSSHVHLYKLHRGITS-----------ATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 414 ~~~~s~~~l~~L~RG~t~-----------a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
....++..+ .++.. ..|.+++|+||+++|++++. |+|+||++..
T Consensus 261 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 261 ---LCDRHSKLF-EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp ---SSCTTCEEE-CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred ---cccceeeEe-ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence 000012333 22221 37999999999999999999 9999999976
No 112
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.73 E-value=5.6e-16 Score=172.60 Aligned_cols=235 Identities=15% Similarity=0.161 Sum_probs=154.3
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
++|.+.|..+.|. +++++|++|..+| ++|||++ .+++...+..|.+.|.++.+.+ .
T Consensus 144 ~~~~~~V~sv~fs-------pdg~~lasgs~Dg~v~iWd~~-~~~~~~~~~~h~~~v~~~s~~~---------------~ 200 (420)
T 4gga_A 144 EQPGEYISSVAWI-------KEGNYLAVGTSSAEVQLWDVQ-QQKRLRNMTSHSARVGSLSWNS---------------Y 200 (420)
T ss_dssp CSTTCCEEEEEEC-------TTSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEEET---------------T
T ss_pred cCCCCcEEEEEEC-------CCCCEEEEEECCCeEEEEEcC-CCcEEEEEeCCCCceEEEeeCC---------------C
Confidence 4566677777775 3567888888877 9999995 5777778888999999887542 2
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCC-eEEEEEeCC-CcEEEEEecC--CeEEE
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-CYEHVLRFR-SSVCMVRCSP--RIVAV 207 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktg-e~V~tL~f~-S~V~sV~~S~--~iLAV 207 (994)
+|+..+ .++++++||.... ..+.++..+ ..|..+.+++ +.|++
T Consensus 201 ~l~sgs---------------------------------~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s 247 (420)
T 4gga_A 201 ILSSGS---------------------------------RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLAS 247 (420)
T ss_dssp EEEEEE---------------------------------TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EEEEEe---------------------------------CCCceeEeeecccceeeEEecccccceeeeeecCCCCeeee
Confidence 455321 1368999999865 466777654 6889999987 56666
Q ss_pred Ee-CCeEEEEECCCCcee----EEEeecCCccccCCCccccccCccceEEcc---cEEEEcc----CCeeeccCCccCCC
Q 001935 208 GL-ATQIYCFDALTLENK----FSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYAS----NTLLLSNSGRLSPQ 275 (994)
Q Consensus 208 gl-~~~I~IwDa~Tle~l----~tL~t~p~p~~~~~g~~~vnv~~gplAlgp---RwLAyas----~~~~iwd~G~~s~q 275 (994)
+. ++.|++||..+.+.. .....+.. ....+++++ ..||.++ ..+.+|+...
T Consensus 248 ~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~-------------~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t---- 310 (420)
T 4gga_A 248 GGNDNLVNVWPSAPGEGGWVPLQTFTQHQG-------------AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS---- 310 (420)
T ss_dssp EETTSCEEEEESSCCSSCSCCSEEECCCSS-------------CEEEEEECTTCTTEEEEEECTTTCEEEEEETTT----
T ss_pred eeccccceEEeeccccccceeeeeecccCC-------------ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc----
Confidence 54 568999999876532 22222222 123456655 5666542 2467787311
Q ss_pred cCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEE
Q 001935 276 NLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKD 355 (994)
Q Consensus 276 sltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwD 355 (994)
+.....+... ..+ ....+++..+. +..+.+..||.|+|||
T Consensus 311 ---------------~~~~~~~~~~------~~v-----------------~~~~~~~~~~~--lv~~sg~~d~~I~iwd 350 (420)
T 4gga_A 311 ---------------GACLSAVDAH------SQV-----------------CSILWSPHYKE--LISGHGFAQNQLVIWK 350 (420)
T ss_dssp ---------------TEEEEEEECS------SCE-----------------EEEEEETTTTE--EEEEECTTTCCEEEEE
T ss_pred ---------------cccceeeccc------cce-----------------eeeeecCCCCe--EEEEEecCCCEEEEEE
Confidence 1111100000 000 00000111111 1112345799999999
Q ss_pred CCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCC
Q 001935 356 FVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 356 l~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (994)
+.+++.+..|.+|+.+|.+|+|+|||++|||||.||+ ||||++..
T Consensus 351 ~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~t-vriWdv~~ 395 (420)
T 4gga_A 351 YPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADET-LRLWRCFE 395 (420)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTE-EEEECCSC
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe-EEEEECCC
Confidence 9999999999999999999999999999999999765 99999853
No 113
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.73 E-value=2.8e-16 Score=173.62 Aligned_cols=214 Identities=14% Similarity=0.126 Sum_probs=153.2
Q ss_pred CCEEEEEECCCCeEEEEEeC--CCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccC
Q 001935 172 PTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f--~S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~ 246 (994)
+++|++||+.+++.+..+.. ...|.+|++++ ++|+++. ++.|++||+.+.+.+.++..|..+
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------- 178 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR------------- 178 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC-------------
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc-------------
Confidence 57999999999999888876 56899999987 5777766 568999999999988888765442
Q ss_pred ccceEEcccEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCC
Q 001935 247 YGPMAVGPRWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (994)
Q Consensus 247 ~gplAlgpRwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~ 324 (994)
...+++.+++|+.++. .+.+|+.... +..+ ..+..+..
T Consensus 179 v~~~~~~~~~l~~~~~dg~i~i~d~~~~------------------~~~~----------------~~~~~~~~------ 218 (401)
T 4aez_A 179 VGCLSWNRHVLSSGSRSGAIHHHDVRIA------------------NHQI----------------GTLQGHSS------ 218 (401)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTSS------------------SCEE----------------EEEECCSS------
T ss_pred eEEEEECCCEEEEEcCCCCEEEEecccC------------------ccee----------------eEEcCCCC------
Confidence 2346667778877664 3567763100 0000 01111100
Q ss_pred CCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC-CEEEEEE--cCCCeEEEEeCCC
Q 001935 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-TLLVTAS--VYGNNINIFRIMP 401 (994)
Q Consensus 325 s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdG-tlLATAS--~dGt~IrVwdi~p 401 (994)
....+.+++..+ .+++++.||.|+|||+.+++.+..+..|..+|.+|+|+|+| .+|++++ .+| .|++||+..
T Consensus 219 ~v~~~~~~~~~~----~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~-~i~i~d~~~ 293 (401)
T 4aez_A 219 EVCGLAWRSDGL----QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK-QIHFWNAAT 293 (401)
T ss_dssp CEEEEEECTTSS----EEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC-EEEEEETTT
T ss_pred CeeEEEEcCCCC----EEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCC-EEEEEECCC
Confidence 001111222222 24567889999999999999999999999999999999977 5677765 444 599999853
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--CCCeEEEEecCCC
Q 001935 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS--SKGTCHVFVLSPF 463 (994)
Q Consensus 402 ~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS--~dGTVhIw~I~~~ 463 (994)
+ ..+..+. +...|.+++|+||+++|++++ .||+|+||++...
T Consensus 294 -------~----------~~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 294 -------G----------ARVNTVD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp -------C----------CEEEEEE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred -------C----------CEEEEEe---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 3 3555654 235799999999999999954 8999999998764
No 114
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.72 E-value=5.5e-17 Score=190.01 Aligned_cols=113 Identities=11% Similarity=-0.037 Sum_probs=88.4
Q ss_pred ccccCCCCeEEEEECCCCc-EEEEeccCCCCeEEE--EECCCC-CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCC
Q 001935 342 GADMDNAGIVVVKDFVTRA-IISQFKAHTSPISAL--CFDPSG-TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (994)
Q Consensus 342 ~as~s~dG~V~VwDl~s~~-~i~~~~aHtspIsaL--aFSPdG-tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~ 417 (994)
+++++.||+|+|||+.++. .+..+.+|+.+|.+| +|+|+| ++|||+|.||+ |||||+.. +
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t-vklWD~~~-------~-------- 343 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY-FYIFNPKD-------I-------- 343 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE-EEEECGGG-------H--------
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCe-EEEEECCC-------C--------
Confidence 3467789999999999764 456789999999999 689999 99999999765 99999853 1
Q ss_pred cceEEEEEeccccc-ccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCccccccc
Q 001935 418 SHVHLYKLHRGITS-ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLS 473 (994)
Q Consensus 418 s~~~l~~L~RG~t~-a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~ 473 (994)
.++..+. |+.. ..|++|+|+||++.|++++.|+||+||++........+..|.
T Consensus 344 --~~~~~~~-~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~ 397 (524)
T 2j04_B 344 --ATTKTTV-SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE 397 (524)
T ss_dssp --HHHCEEE-EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS
T ss_pred --Ccccccc-cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCC
Confidence 1222232 2222 247899999999999999999999999998766555666674
No 115
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.71 E-value=2.6e-15 Score=156.98 Aligned_cols=237 Identities=16% Similarity=0.174 Sum_probs=147.0
Q ss_pred CCCCCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCc
Q 001935 53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHP 131 (994)
Q Consensus 53 ~~~kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srp 131 (994)
.+|.+.|..+.|.. +++.|++|..+| ++|||++ .+++...+..|...+.++...+ .
T Consensus 64 ~~~~~~V~~v~~~~-------~~~~l~sgs~Dg~v~iw~~~-~~~~~~~~~~h~~~~~~~~~~~---------------~ 120 (318)
T 4ggc_A 64 EQPGEYISSVAWIK-------EGNYLAVGTSSAEVQLWDVQ-QQKRLRNMTSHSARVGSLSWNS---------------Y 120 (318)
T ss_dssp CSTTCCEEEEEECT-------TSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEEET---------------T
T ss_pred cCCCCeEEEEEECC-------CCCEEEEEECCCcEEEeecC-CceeEEEecCccceEEEeecCC---------------C
Confidence 45667788888863 567888887776 8999995 5777778888888888766442 2
Q ss_pred EEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCC-eEEEEEeC-CCcEEEEEecC--CeEEE
Q 001935 132 FLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH-CYEHVLRF-RSSVCMVRCSP--RIVAV 207 (994)
Q Consensus 132 LLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktg-e~V~tL~f-~S~V~sV~~S~--~iLAV 207 (994)
+|+..+ .++.+++|+..++ ..+.++.. ...+..+.+.+ +.|++
T Consensus 121 ~l~s~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 167 (318)
T 4ggc_A 121 ILSSGS---------------------------------RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLAS 167 (318)
T ss_dssp EEEEEE---------------------------------TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EEEEEe---------------------------------cCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEE
Confidence 455421 1367999998876 45666654 46788888876 56666
Q ss_pred Ee-CCeEEEEECCCCceeEEEee-cCCccccCCCccccccCccceEEcc---cEEEE--ccC--CeeeccCCccCCCcCC
Q 001935 208 GL-ATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGP---RWLAY--ASN--TLLLSNSGRLSPQNLT 278 (994)
Q Consensus 208 gl-~~~I~IwDa~Tle~l~tL~t-~p~p~~~~~g~~~vnv~~gplAlgp---RwLAy--as~--~~~iwd~G~~s~qslt 278 (994)
+. ++.|++||+.+.+....... .... . . ....+++.+ +.+.. ++. .+.+|+....
T Consensus 168 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~--~----~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~------ 231 (318)
T 4ggc_A 168 GGNDNLVNVWPSAPGEGGWVPLQTFTQH----Q--G----AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG------ 231 (318)
T ss_dssp EETTSCEEEEESSCBTTBSCCSEEECCC----C--S----CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC------
T ss_pred EecCcceeEEECCCCcccccceeeeccc----C--C----ceEEEEecCCCCcEEEEEecCCCCEEEEEecccc------
Confidence 55 56799999988664322111 0000 0 0 012233333 33322 221 3456653110
Q ss_pred CCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCC
Q 001935 279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT 358 (994)
Q Consensus 279 p~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s 358 (994)
....... .. .......+.+.... +..+++..||.|+|||+.+
T Consensus 232 -------------~~~~~~~-----------------~~------~~v~~~~~~~~~~~--~~~~sg~~d~~i~iwd~~~ 273 (318)
T 4ggc_A 232 -------------ACLSAVD-----------------AH------SQVCSILWSPHYKE--LISGHGFAQNQLVIWKYPT 273 (318)
T ss_dssp -------------CEEEEEE-----------------CS------SCEEEEEEETTTTE--EEEEECTTTCCEEEEETTT
T ss_pred -------------ccccccc-----------------ce------eeeeeeeecccccc--eEEEEEcCCCEEEEEECCC
Confidence 0000000 00 00000000111110 1123456899999999999
Q ss_pred CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCC
Q 001935 359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 359 ~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (994)
++.+..|++|+.+|.+|+|+|||++|||||.||+ |||||+.
T Consensus 274 ~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~-v~iWd~~ 314 (318)
T 4ggc_A 274 MAKVAELKGHTSRVLSLTMSPDGATVASAAADET-LRLWRCF 314 (318)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTE-EEEECCS
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe-EEEEECC
Confidence 9999999999999999999999999999999765 9999985
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.70 E-value=1.4e-15 Score=170.41 Aligned_cols=102 Identities=19% Similarity=0.291 Sum_probs=83.8
Q ss_pred ccCCCCeEEEEECCCC---cEEEEeccCCCCeEEEEECCCCC-EEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcc
Q 001935 344 DMDNAGIVVVKDFVTR---AIISQFKAHTSPISALCFDPSGT-LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~---~~i~~~~aHtspIsaLaFSPdGt-lLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~ 419 (994)
+++.+|.|+|||+.++ +.+..+.+|..+|.+|+|+|+|. +||+++.+|+ |+|||+... +
T Consensus 249 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~------~---------- 311 (430)
T 2xyi_A 249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDLRNL------K---------- 311 (430)
T ss_dssp EEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCT------T----------
T ss_pred EEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCC------C----------
Confidence 4567999999999987 57788899999999999999997 7999999665 999998631 1
Q ss_pred eEEEEEecccccccEEEEEEccCCC-EEEEEeCCCeEEEEecCCCC
Q 001935 420 VHLYKLHRGITSATIQDICFSHYSQ-WIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSpDg~-~LAsgS~dGTVhIw~I~~~g 464 (994)
..+..+. + +...|.+|+|+|+++ +|++++.||+|+||++...+
T Consensus 312 ~~~~~~~-~-h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 312 LKLHSFE-S-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp SCSEEEE-C-CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred CCeEEee-c-CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 2344553 2 346799999999995 69999999999999998754
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=9.9e-15 Score=163.99 Aligned_cols=246 Identities=9% Similarity=-0.056 Sum_probs=167.5
Q ss_pred CCCCcEEEEEEeeccCCCCCCCeE-EEEEecCc-EEEEEccC-CCcceEeee--eccCCEEEEEEecCCCCCCCCCCccc
Q 001935 54 DLKDQVTWAGFDRLEYGPSVFKQV-LLLGYQNG-FQVLDVED-ASNFNELVS--KRDGPVSFLQMQPFPVKDDGCEGFRK 128 (994)
Q Consensus 54 ~~kd~V~wa~Fd~le~~~~~~~~v-L~lGy~~G-~qVWDv~~-~g~v~ells--~hdGpV~~v~~lP~p~~s~~~D~F~~ 128 (994)
.+.+.|..+.|.. +++. +++|..+| ++|||+.. .+.....+. .+.+.|.++++.|++
T Consensus 100 ~~~~~v~~~~~s~-------d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~----------- 161 (450)
T 2vdu_B 100 PIYSYIRNLRLTS-------DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD----------- 161 (450)
T ss_dssp CCCCCEEEEEECT-------TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS-----------
T ss_pred ccCCceEEEEEcC-------CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC-----------
Confidence 3455788888863 4455 47886655 99999962 466777776 456889999999865
Q ss_pred cCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEE----EEe-CCCcEEEEEecCC
Q 001935 129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEH----VLR-FRSSVCMVRCSPR 203 (994)
Q Consensus 129 srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~----tL~-f~S~V~sV~~S~~ 203 (994)
.+|++.. .++.|++|++.+++... .+. +...|.+|+++++
T Consensus 162 --~~l~~~~---------------------------------~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 206 (450)
T 2vdu_B 162 --TTVIIAD---------------------------------KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKD 206 (450)
T ss_dssp --SEEEEEE---------------------------------TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEEC
T ss_pred --CEEEEEe---------------------------------CCCcEEEEecCCcccccccceeeecccCceEEEEEcCC
Confidence 3566532 13679999998887543 443 4578999999876
Q ss_pred -----eEEEEe-CCeEEEEECCCCceeEEEe-ecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCc
Q 001935 204 -----IVAVGL-ATQIYCFDALTLENKFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQN 276 (994)
Q Consensus 204 -----iLAVgl-~~~I~IwDa~Tle~l~tL~-t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qs 276 (994)
+|+++. ++.|++||+.+.+.+.++. .|..+ ..-++|. +
T Consensus 207 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~--------------------v~~~~~s-d-------------- 251 (450)
T 2vdu_B 207 SDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF--------------------VSSICCG-K-------------- 251 (450)
T ss_dssp TTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC--------------------EEEEEEC-S--------------
T ss_pred CCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc--------------------eEEEEEC-C--------------
Confidence 677655 5589999999887766543 23221 0112222 1
Q ss_pred CCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEEC
Q 001935 277 LTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDF 356 (994)
Q Consensus 277 ltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl 356 (994)
+. .+++++.||.|+|||+
T Consensus 252 --------------~~------------------------------------------------~l~s~~~d~~v~vwd~ 269 (450)
T 2vdu_B 252 --------------DY------------------------------------------------LLLSAGGDDKIFAWDW 269 (450)
T ss_dssp --------------TT------------------------------------------------EEEEEESSSEEEEEET
T ss_pred --------------CC------------------------------------------------EEEEEeCCCeEEEEEC
Confidence 00 0123457899999999
Q ss_pred CCCcEEEEecc-------------------------CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeC--CCCcccCCCC
Q 001935 357 VTRAIISQFKA-------------------------HTSPISALCFDPSGTLLVTASVYGNNINIFRI--MPSCMRSGSG 409 (994)
Q Consensus 357 ~s~~~i~~~~a-------------------------HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi--~p~~~~~~sG 409 (994)
.+++.+..+.. +...|.+|+|+|+|++|++++..+..|+||++ ... +
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~------~ 343 (450)
T 2vdu_B 270 KTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQK------G 343 (450)
T ss_dssp TTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSST------T
T ss_pred CCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCC------C
Confidence 99988888763 34579999999999999999944567999998 221 1
Q ss_pred CCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC------CCeEEEEecCCCCCC
Q 001935 410 NHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS------KGTCHVFVLSPFGGD 466 (994)
Q Consensus 410 ~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~------dGTVhIw~I~~~gg~ 466 (994)
....+..+. +. ..|.+++|+|++.++++++. +..|.||.+...++.
T Consensus 344 --------~l~~~~~~~-~~--~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~ 395 (450)
T 2vdu_B 344 --------DLALKQIIT-FP--YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENS 395 (450)
T ss_dssp --------CEEEEEEEE-CS--SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTE
T ss_pred --------ceeeccEec-cC--CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCe
Confidence 113444453 32 57999999997666666554 455899999876553
No 118
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.69 E-value=2.5e-14 Score=150.36 Aligned_cols=279 Identities=11% Similarity=0.071 Sum_probs=169.0
Q ss_pred EEEEEe-cCcEEEEEccCCCcceEeeeeccC--CEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCc
Q 001935 77 VLLLGY-QNGFQVLDVEDASNFNELVSKRDG--PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (994)
Q Consensus 77 vL~lGy-~~G~qVWDv~~~g~v~ells~hdG--pV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~ 153 (994)
+|+++. ++.+++||+. ++++...+..... .+..+++.|++ ..|++...
T Consensus 3 ~~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~s~dg-------------~~l~v~~~--------------- 53 (337)
T 1pby_B 3 YILAPARPDKLVVIDTE-KMAVDKVITIADAGPTPMVPMVAPGG-------------RIAYATVN--------------- 53 (337)
T ss_dssp EEEEEETTTEEEEEETT-TTEEEEEEECTTCTTCCCCEEECTTS-------------SEEEEEET---------------
T ss_pred EEEEcCCCCeEEEEECC-CCcEEEEEEcCCCCCCccceEEcCCC-------------CEEEEEeC---------------
Confidence 455554 4559999985 4555555443221 46778888765 24444321
Q ss_pred cccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------cEEEEEecC--CeEEEEe-------------CCe
Q 001935 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSP--RIVAVGL-------------ATQ 212 (994)
Q Consensus 154 ~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S------~V~sV~~S~--~iLAVgl-------------~~~ 212 (994)
..+.|.+||+.+++.+..+.+.. .+..+++++ +.|+++. ++.
T Consensus 54 -----------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~ 116 (337)
T 1pby_B 54 -----------------KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116 (337)
T ss_dssp -----------------TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred -----------------CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCce
Confidence 12589999999999999888754 677888886 5777763 578
Q ss_pred EEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcc--cEEEEccCCeeeccC--CccCCCcCCC--CCCCCCc
Q 001935 213 IYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNS--GRLSPQNLTP--SGVSPST 286 (994)
Q Consensus 213 I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~~~~iwd~--G~~s~qsltp--~~~S~st 286 (994)
|++||+.+++.+..+..... ...+++++ ++|++++..+.+|+. +.. ...+.. ...+..+
T Consensus 117 i~v~d~~~~~~~~~~~~~~~--------------~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~ 181 (337)
T 1pby_B 117 VALYDAETLSRRKAFEAPRQ--------------ITMLAWARDGSKLYGLGRDLHVMDPEAGTL-VEDKPIQSWEAETYA 181 (337)
T ss_dssp EEEEETTTTEEEEEEECCSS--------------CCCEEECTTSSCEEEESSSEEEEETTTTEE-EEEECSTTTTTTTBC
T ss_pred EEEEECCCCcEEEEEeCCCC--------------cceeEECCCCCEEEEeCCeEEEEECCCCcE-eeeeeccccCCCcee
Confidence 99999999887766653211 13466776 677777666777763 211 000000 0112233
Q ss_pred CCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE-EEe
Q 001935 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII-SQF 365 (994)
Q Consensus 287 Sp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i-~~~ 365 (994)
+|++..+...... .+.+. ..|.......+.. ........|.+||+.+++.. ..+
T Consensus 182 s~dg~~l~~~~~~-------~~~~~--~~~~~~~~~~~~~----------------~~~~~~~~v~~~d~~~~~~~~~~~ 236 (337)
T 1pby_B 182 QPDVLAVWNQHES-------SGVMA--TPFYTARKDIDPA----------------DPTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp CCBCCCCCCCCTT-------TTEEE--EEEEEEBTTSCTT----------------SGGGEEEEEEEEETTTCCEEEEEE
T ss_pred CCCccEEeeeccC-------CCcee--eeeeccccccccc----------------cccccccceEEEeCCCCCceEeec
Confidence 4443322110000 00000 0000000000000 00011226899999998764 345
Q ss_pred ccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCE
Q 001935 366 KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQW 445 (994)
Q Consensus 366 ~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~ 445 (994)
..|...+..++|+|||++|++++ + .|.+||+.. + +.+..+..+ ..+.+++|+|||++
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~~--~-~v~~~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dg~~ 293 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGAY--N-VLESFDLEK-------N----------ASIKRVPLP---HSYYSVNVSTDGST 293 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEEE--S-EEEEEETTT-------T----------EEEEEEECS---SCCCEEEECTTSCE
T ss_pred CCCCCceeeEEECCCCCEEEEeC--C-eEEEEECCC-------C----------cCcceecCC---CceeeEEECCCCCE
Confidence 56777889999999999999883 4 599999853 2 344444332 35789999999999
Q ss_pred EEEEeCCCeEEEEecCCCC
Q 001935 446 IAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 446 LAsgS~dGTVhIw~I~~~g 464 (994)
|++++.+++|+||++....
T Consensus 294 l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 294 VWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp EEEESBSSEEEEEETTTCC
T ss_pred EEEEcCCCcEEEEECcCCc
Confidence 9999999999999987654
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.68 E-value=1.5e-14 Score=159.33 Aligned_cols=231 Identities=12% Similarity=0.158 Sum_probs=155.6
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceE-----eeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCC
Q 001935 74 FKQVLLLGYQNG-FQVLDVEDASNFNE-----LVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPG 147 (994)
Q Consensus 74 ~~~vL~lGy~~G-~qVWDv~~~g~v~e-----lls~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~ 147 (994)
.+.+++++..++ +++||+. .+++.. .+..|.+.|..+++.|++ .+++. +.
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~s-~~--------- 188 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDIN-SGQTVRLSPPEKYKKKLGFVETISIPEHN-------------ELWVS-QM--------- 188 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETT-TCCEEEECCCHHHHTTCCEEEEEEEGGGT-------------EEEEE-EG---------
T ss_pred CCeEEEEeCCCCeEEEEECC-CCeEeeecCcccccccCCceeEEEEcCCC-------------EEEEE-EC---------
Confidence 567888877665 9999995 465655 234677889999987654 24443 21
Q ss_pred CCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC-CcEEEEEecC--CeE-EEE-eCCeEEEEECCCCc
Q 001935 148 QNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR-SSVCMVRCSP--RIV-AVG-LATQIYCFDALTLE 222 (994)
Q Consensus 148 q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~-S~V~sV~~S~--~iL-AVg-l~~~I~IwDa~Tle 222 (994)
.+++|++||+++++.+.++..+ ..|.++++++ +.| +++ .++.|++||+.+++
T Consensus 189 -----------------------~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 189 -----------------------QANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp -----------------------GGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred -----------------------CCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 1368999999999999998754 5899999987 455 445 35789999999887
Q ss_pred eeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhh
Q 001935 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS 302 (994)
Q Consensus 223 ~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dss 302 (994)
.+..+..... +..+++.. ++..+++-.
T Consensus 246 ~~~~~~~~~~---------------------~~~~~~~~---------------------------~g~~l~~~~----- 272 (433)
T 3bws_A 246 EIRKTDKIGL---------------------PRGLLLSK---------------------------DGKELYIAQ----- 272 (433)
T ss_dssp EEEECCCCSE---------------------EEEEEECT---------------------------TSSEEEEEE-----
T ss_pred EEEEecCCCC---------------------ceEEEEcC---------------------------CCCEEEEEE-----
Confidence 6554432110 11122222 111111100
Q ss_pred hhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCC
Q 001935 303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGT 382 (994)
Q Consensus 303 k~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGt 382 (994)
+. . .. ....+|.|++||+.+++.+..+ .|...+..++|+|+|+
T Consensus 273 -------------~~-----~-----------~~-------~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~ 315 (433)
T 3bws_A 273 -------------FS-----A-----------SN-------QESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTEN 315 (433)
T ss_dssp -------------EE-----S-----------CT-------TCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTT
T ss_pred -------------CC-----C-----------Cc-------cccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCC
Confidence 00 0 00 0025899999999998876665 5666899999999997
Q ss_pred EE-EEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC----------
Q 001935 383 LL-VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS---------- 451 (994)
Q Consensus 383 lL-ATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~---------- 451 (994)
.| ++++. +..|++|++.. + ..+..+. +...+.+++|+||+++|++++.
T Consensus 316 ~l~~~~~~-~~~v~v~d~~~-------~----------~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 374 (433)
T 3bws_A 316 KIYVSDMC-CSKIEVYDLKE-------K----------KVQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYL 374 (433)
T ss_dssp EEEEEETT-TTEEEEEETTT-------T----------EEEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTT
T ss_pred EEEEEecC-CCEEEEEECCC-------C----------cEEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccccc
Confidence 65 44455 55699999853 2 3444443 2346899999999999999887
Q ss_pred -----CCeEEEEecCC
Q 001935 452 -----KGTCHVFVLSP 462 (994)
Q Consensus 452 -----dGTVhIw~I~~ 462 (994)
||+|++|++..
T Consensus 375 ~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 375 KKGLVLGKVYVIDTTT 390 (433)
T ss_dssp SCCSSCCEEEEEETTT
T ss_pred cccccceEEEEEECCC
Confidence 57999999865
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.68 E-value=2.1e-15 Score=159.85 Aligned_cols=257 Identities=14% Similarity=0.098 Sum_probs=159.3
Q ss_pred CcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCE
Q 001935 95 SNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTA 174 (994)
Q Consensus 95 g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~t 174 (994)
....+++..|.+.|.++++.|+.. .+.+|++.+ .+++
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~----------~g~~l~~~~---------------------------------~dg~ 65 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTL----------PGNFLIAGS---------------------------------WAND 65 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTS----------SSEEEEEEE---------------------------------TTSE
T ss_pred cceeEeccCCCCceEEEEEcCCCC----------CceEEEEEC---------------------------------CCCc
Confidence 345567888999999999998620 013566432 1368
Q ss_pred EEEEECCC-CeEE-EEEe-CCCcEEEEEecC--CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCcc
Q 001935 175 VRFYSFQS-HCYE-HVLR-FRSSVCMVRCSP--RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (994)
Q Consensus 175 VrLWDlkt-ge~V-~tL~-f~S~V~sV~~S~--~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~g 248 (994)
|+|||+++ ++.+ ..+. +...|.++++++ ++|+++. ++.|++||+.+.+.+. +..+..+ ..
T Consensus 66 i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~-------------v~ 131 (368)
T 3mmy_A 66 VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAP-------------VK 131 (368)
T ss_dssp EEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSC-------------EE
T ss_pred EEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCc-------------eE
Confidence 99999997 6555 5665 457999999987 4677655 5689999999887655 3334331 23
Q ss_pred ceEE--cc--cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccC
Q 001935 249 PMAV--GP--RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 322 (994)
Q Consensus 249 plAl--gp--RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p 322 (994)
.+++ .+ ++|+.++. .+.+|+.... ..+..+... ..+ ++
T Consensus 132 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------------------~~~~~~~~~------~~~------~~----- 175 (368)
T 3mmy_A 132 TIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-------------------NPMMVLQLP------ERC------YC----- 175 (368)
T ss_dssp EEEEEECSSCEEEEEEETTSEEEEECSSCS-------------------SCSEEEECS------SCE------EE-----
T ss_pred EEEEEeCCCCCEEEEccCCCcEEEEECCCC-------------------cEEEEEecC------CCc------eE-----
Confidence 4566 44 56766653 4677873110 000000000 000 00
Q ss_pred CCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE-EEe-ccCCCCeEEEEECCCCCE----EEEEEcCCCeEEE
Q 001935 323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII-SQF-KAHTSPISALCFDPSGTL----LVTASVYGNNINI 396 (994)
Q Consensus 323 ~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i-~~~-~aHtspIsaLaFSPdGtl----LATAS~dGt~IrV 396 (994)
...... .+..+..++.+.+||+...... ..+ ..+...+.++++.+++.. |++++.+|. |+|
T Consensus 176 ------~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-i~i 242 (368)
T 3mmy_A 176 ------ADVIYP------MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR-VAI 242 (368)
T ss_dssp ------EEEETT------EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE-EEE
T ss_pred ------EEecCC------eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc-EEE
Confidence 000000 1223457889999999876533 222 235566777777766655 999999665 999
Q ss_pred EeCCCCcccCCCCCCccccCCcceEEEEEeccccc-----------ccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 397 FRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----------ATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 397 wdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~-----------a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
|++.... ....++.+. ++.. ..|.+++|+||+++|++++.||+|+||++.....
T Consensus 243 ~~~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 307 (368)
T 3mmy_A 243 HYINPPN--------------PAKDNFTFK-CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK 307 (368)
T ss_dssp EESSCSC--------------HHHHSEEEE-CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred EecCCCC--------------ccccceeee-eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE
Confidence 9986420 001223332 2221 1599999999999999999999999999986544
Q ss_pred Ccccccc
Q 001935 466 DSGFQTL 472 (994)
Q Consensus 466 ~~~~~~H 472 (994)
...+..|
T Consensus 308 ~~~~~~~ 314 (368)
T 3mmy_A 308 LKTSEQL 314 (368)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 3444444
No 121
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.67 E-value=2.4e-14 Score=161.15 Aligned_cols=235 Identities=15% Similarity=0.077 Sum_probs=154.7
Q ss_pred CeEEEEEec------CcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCC
Q 001935 75 KQVLLLGYQ------NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQ 148 (994)
Q Consensus 75 ~~vL~lGy~------~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q 148 (994)
.+++.++.. ..+++||++ .+ ....+..|.+.|..+++.|++ ..||.++.++
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~-g~-~~~~l~~~~~~v~~~~~Spdg-------------~~la~~s~~~-------- 200 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYD-GY-NQFVVHRSPQPLMSPAWSPDG-------------SKLAYVTFES-------- 200 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETT-SC-SCEEEEEESSCEEEEEECTTS-------------SEEEEEECTT--------
T ss_pred CEEEEEEecCCCCccceEEEEcCC-CC-CCEEEeCCCCcceeeEEcCCC-------------CEEEEEEecC--------
Confidence 355555554 358999995 34 445666788999999999876 3567654221
Q ss_pred CCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEE-EeC---CeEEEEECCCCc
Q 001935 149 NRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAV-GLA---TQIYCFDALTLE 222 (994)
Q Consensus 149 ~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAV-gl~---~~I~IwDa~Tle 222 (994)
...+|++||++++++.....+...+.+++|+| +.|++ +.. ..|++||+.+.+
T Consensus 201 ----------------------~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~ 258 (415)
T 2hqs_A 201 ----------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 258 (415)
T ss_dssp ----------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred ----------------------CCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence 02589999999999876556778899999998 46664 432 359999998876
Q ss_pred eeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhh
Q 001935 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHS 302 (994)
Q Consensus 223 ~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dss 302 (994)
. ..+..+... ...++++ |++..++.
T Consensus 259 ~-~~l~~~~~~-------------~~~~~~s----------------------------------pdg~~l~~------- 283 (415)
T 2hqs_A 259 I-RQVTDGRSN-------------NTEPTWF----------------------------------PDSQNLAF------- 283 (415)
T ss_dssp E-EECCCCSSC-------------EEEEEEC----------------------------------TTSSEEEE-------
T ss_pred E-EeCcCCCCc-------------ccceEEC----------------------------------CCCCEEEE-------
Confidence 4 333322210 0112222 22222211
Q ss_pred hhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCC--eEEEEECCCCcEEEEeccCCCCeEEEEECCC
Q 001935 303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG--IVVVKDFVTRAIISQFKAHTSPISALCFDPS 380 (994)
Q Consensus 303 k~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG--~V~VwDl~s~~~i~~~~aHtspIsaLaFSPd 380 (994)
....+| .|.+||+.+++. ..+..|...+.+++|+||
T Consensus 284 -----------------------------------------~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd 321 (415)
T 2hqs_A 284 -----------------------------------------TSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSD 321 (415)
T ss_dssp -----------------------------------------EECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTT
T ss_pred -----------------------------------------EECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCC
Confidence 001122 577889888763 456678889999999999
Q ss_pred CCEEEEEEcCC--CeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC---eE
Q 001935 381 GTLLVTASVYG--NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG---TC 455 (994)
Q Consensus 381 GtlLATAS~dG--t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dG---TV 455 (994)
|++||+++.++ ..|.+|++.. + .+..+..+ ..+.+++|+|||++|++++.++ ++
T Consensus 322 G~~l~~~~~~~g~~~i~~~d~~~-------~-----------~~~~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l 380 (415)
T 2hqs_A 322 GKFMVMVSSNGGQQHIAKQDLAT-------G-----------GVQVLSST---FLDETPSLAPNGTMVIYSSSQGMGSVL 380 (415)
T ss_dssp SSEEEEEEECSSCEEEEEEETTT-------C-----------CEEECCCS---SSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred CCEEEEEECcCCceEEEEEECCC-------C-----------CEEEecCC---CCcCCeEEcCCCCEEEEEEcCCCccEE
Confidence 99999988752 4699999853 2 22344332 2689999999999999998887 78
Q ss_pred EEEecCCCCCCccccccc
Q 001935 456 HVFVLSPFGGDSGFQTLS 473 (994)
Q Consensus 456 hIw~I~~~gg~~~~~~H~ 473 (994)
.+|++. .+....+..|.
T Consensus 381 ~~~d~~-g~~~~~l~~~~ 397 (415)
T 2hqs_A 381 NLVSTD-GRFKARLPATD 397 (415)
T ss_dssp EEEETT-SCCEEECCCSS
T ss_pred EEEECC-CCcEEEeeCCC
Confidence 888875 22233344443
No 122
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.8e-15 Score=178.78 Aligned_cols=240 Identities=9% Similarity=0.021 Sum_probs=156.3
Q ss_pred CCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCC----CC---C--ccccCcEEEEEecCCCC
Q 001935 73 VFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDG----CE---G--FRKLHPFLLVVAGEDTN 142 (994)
Q Consensus 73 ~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~----~D---~--F~~srpLLAvVsgd~~~ 142 (994)
++++.+++++.++ ++ |.. ..+.+.+|.+.|..|+++|++....- .+ . +....+..+ |.-.
T Consensus 25 pDG~~iASas~D~TV~--d~~----~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~-vawS--- 94 (588)
T 2j04_A 25 RDGTLYLTTFPDISIG--QPK----YAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRV-CKPS--- 94 (588)
T ss_dssp TTSCEEEECSSSEEEE--EEC----CCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEE-EEEC---
T ss_pred CCCCEEEEEcCCceee--ccc----ccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEE-EEEC---
Confidence 5788999998887 56 642 23445688899999999998822100 00 0 111111111 1100
Q ss_pred CCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------cEEEEEecC--CeEEEEe-CCeE
Q 001935 143 TLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSP--RIVAVGL-ATQI 213 (994)
Q Consensus 143 ~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S------~V~sV~~S~--~iLAVgl-~~~I 213 (994)
++|.+=. +...+++|++||.++ ++..+. +. .|.+++|+| ++||+|. +++|
T Consensus 95 --------------PdG~~LA----s~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtV 153 (588)
T 2j04_A 95 --------------PIDDWMA----VLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGEL 153 (588)
T ss_dssp --------------SSSSCEE----EEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEE
T ss_pred --------------CCCCEEE----EEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEE
Confidence 2222100 012358899999654 777777 44 499999998 6788766 5689
Q ss_pred EEEECCCCce-------eEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCc
Q 001935 214 YCFDALTLEN-------KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPST 286 (994)
Q Consensus 214 ~IwDa~Tle~-------l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~st 286 (994)
+|||+.+.+. +.++..+... +..++.+.++
T Consensus 154 kIWd~~~~~l~~~~~i~l~ti~~~~~g-------------------------------------------h~~~V~sVaw 190 (588)
T 2j04_A 154 QFFSIRKNSENTPEFYFESSIRLSDAG-------------------------------------------SKDWVTHIVW 190 (588)
T ss_dssp EEEECCCCTTTCCCCEEEEEEECSCTT-------------------------------------------CCCCEEEEEE
T ss_pred EEEECCCCccccccceeeeeeeccccc-------------------------------------------ccccEEEEEE
Confidence 9999988652 3444322110 0001111122
Q ss_pred CCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCc---EEE
Q 001935 287 SPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA---IIS 363 (994)
Q Consensus 287 Sp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~---~i~ 363 (994)
||++ ++ .++.|+.|++||+.++. +..
T Consensus 191 SPdg--La-------------------------------------------------ass~D~tVrlWd~~~~~~~~~~~ 219 (588)
T 2j04_A 191 YEDV--LV-------------------------------------------------AALSNNSVFSMTVSASSHQPVSR 219 (588)
T ss_dssp ETTE--EE-------------------------------------------------EEETTCCEEEECCCSSSSCCCEE
T ss_pred cCCc--EE-------------------------------------------------EEeCCCeEEEEECCCCcccccee
Confidence 2332 21 23468999999999877 345
Q ss_pred Ee-ccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEE--c
Q 001935 364 QF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--S 440 (994)
Q Consensus 364 ~~-~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaF--S 440 (994)
++ .+|...|.+++|+ |+.||+++. | .|++|++.. + ++..+..| +.+.|++|+| |
T Consensus 220 tL~~~h~~~V~svaFs--g~~LASa~~-~-tIkLWd~~~-------~-----------~~~~~~~g-h~~~V~~va~~~s 276 (588)
T 2j04_A 220 MIQNASRRKITDLKIV--DYKVVLTCP-G-YVHKIDLKN-------Y-----------SISSLKTG-SLENFHIIPLNHE 276 (588)
T ss_dssp EEECCCSSCCCCEEEE--TTEEEEECS-S-EEEEEETTT-------T-----------EEEEEECS-CCSCCCEEEETTC
T ss_pred eecccccCcEEEEEEE--CCEEEEEeC-C-eEEEEECCC-------C-----------eEEEEEcC-CCceEEEEEeeeC
Confidence 67 4899999999999 799999984 4 699999853 2 34344446 5678999999 9
Q ss_pred cCCCEEEEEeCCCeEEEEecC
Q 001935 441 HYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 441 pDg~~LAsgS~dGTVhIw~I~ 461 (994)
||++.|++++.+|+ +||.++
T Consensus 277 ~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 277 KESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SSCEEEEECSSCEE-EEEESS
T ss_pred CCCCEEEEEcCCCC-EEEeec
Confidence 99999999999999 999987
No 123
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.1e-15 Score=179.93 Aligned_cols=210 Identities=14% Similarity=0.165 Sum_probs=145.0
Q ss_pred eEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEE
Q 001935 98 NELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRF 177 (994)
Q Consensus 98 ~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrL 177 (994)
..++..|.++|.++++.|++ .+|++.+ .+++|+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg-------------~~latg~---------------------------------~dg~I~v 35 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYG-------------KRLATCS---------------------------------SDKTIKI 35 (753)
T ss_dssp ------CCCCEEEECCCSSS-------------CCEEEEE---------------------------------TTTEEEE
T ss_pred eeecccCcceeEEEEECCCC-------------CeEEEEE---------------------------------CCCcEEE
Confidence 35678899999999988765 3566532 1368999
Q ss_pred EECC--CCeEEEEEe-CCCcEEEEEecC----CeEEEEe-CCeEEEEECCCCc--eeEEEeecCCccccCCCccccccCc
Q 001935 178 YSFQ--SHCYEHVLR-FRSSVCMVRCSP----RIVAVGL-ATQIYCFDALTLE--NKFSVLTYPVPQLAGQGAVGINVGY 247 (994)
Q Consensus 178 WDlk--tge~V~tL~-f~S~V~sV~~S~----~iLAVgl-~~~I~IwDa~Tle--~l~tL~t~p~p~~~~~g~~~vnv~~ 247 (994)
||+. +++.+.++. +..+|.++++++ ++|+++. ++.|++||+.+.+ ....+..|..+ .
T Consensus 36 wd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~-------------V 102 (753)
T 3jro_A 36 FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS-------------V 102 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC-------------E
T ss_pred EecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCC-------------e
Confidence 9998 556777776 446999999974 5666655 5689999998875 33333322221 0
Q ss_pred cceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCC-CceEEEeehhhhhhhhcccceeeccccccccCCCCC
Q 001935 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGG-SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (994)
Q Consensus 248 gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~-gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~ 326 (994)
..+++.+ +. +.
T Consensus 103 -------~~v~~sp---------------------------~~~~~---------------------------------- 114 (753)
T 3jro_A 103 -------NSVQWAP---------------------------HEYGP---------------------------------- 114 (753)
T ss_dssp -------EEEEECC---------------------------GGGCS----------------------------------
T ss_pred -------EEEEECC---------------------------CCCCC----------------------------------
Confidence 1112211 10 00
Q ss_pred CCccCCCccccccccccccCCCCeEEEEECCCCc--EEEEeccCCCCeEEEEECC-------------CCCEEEEEEcCC
Q 001935 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRA--IISQFKAHTSPISALCFDP-------------SGTLLVTASVYG 391 (994)
Q Consensus 327 s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~--~i~~~~aHtspIsaLaFSP-------------dGtlLATAS~dG 391 (994)
.+++++.||.|+|||+.++. ....+.+|..+|.+++|+| +|.+|++++.+|
T Consensus 115 --------------~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg 180 (753)
T 3jro_A 115 --------------LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180 (753)
T ss_dssp --------------EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTS
T ss_pred --------------EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCC
Confidence 12345689999999998873 4466789999999999999 599999999987
Q ss_pred CeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC---CCEEEEEeCCCeEEEEecCCCC
Q 001935 392 NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY---SQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 392 t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpD---g~~LAsgS~dGTVhIw~I~~~g 464 (994)
+ |+|||+... ......+..+ .+ +...|.+++|+|| +++|++++.||+|+||++....
T Consensus 181 ~-I~iwd~~~~-------------~~~~~~~~~~-~~-h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 181 L-VKIWKYNSD-------------AQTYVLESTL-EG-HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp C-EEEEEEETT-------------TTEEEEEEEE-CC-CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred e-EEEEeccCC-------------cccceeeeee-cC-CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 7 999998531 0111234444 34 3467999999999 9999999999999999998754
No 124
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.66 E-value=1.7e-14 Score=153.03 Aligned_cols=271 Identities=7% Similarity=-0.002 Sum_probs=167.5
Q ss_pred CeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCc
Q 001935 75 KQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (994)
Q Consensus 75 ~~vL~lGy~~-G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~ 153 (994)
..+++++..+ .+.+||++ ++++...+..+..++ .+++.|++ ..|+++..
T Consensus 10 ~~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~-~~~~s~dg-------------~~l~~~~~--------------- 59 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTD-TLEILNQITLGYDFV-DTAITSDC-------------SNVVVTSD--------------- 59 (331)
T ss_dssp CEEEEEEGGGTEEEEEETT-TCCEEEEEECCCCEE-EEEECSSS-------------CEEEEEES---------------
T ss_pred CEEEEEecCCCeEEEEeCc-ccceeeeEEccCCcc-eEEEcCCC-------------CEEEEEeC---------------
Confidence 4566666554 49999985 577766666555666 88888765 24454331
Q ss_pred cccccCCcCCCCCCCCCCCCEEEEEECCCCeE-EEEEeCCCcEEE-EEecC--CeEEEEeCC----eEEEEECCCCceeE
Q 001935 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCY-EHVLRFRSSVCM-VRCSP--RIVAVGLAT----QIYCFDALTLENKF 225 (994)
Q Consensus 154 ~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~-V~tL~f~S~V~s-V~~S~--~iLAVgl~~----~I~IwDa~Tle~l~ 225 (994)
..++|.+||+++++. +..+........ +++++ +.|+++..+ .|++||+.+.+.+.
T Consensus 60 -----------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~ 122 (331)
T 3u4y_A 60 -----------------FCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS 122 (331)
T ss_dssp -----------------TTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE
T ss_pred -----------------CCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE
Confidence 125899999999997 777776655555 88887 567776655 89999999988777
Q ss_pred EEeecCCccccCCCccccccCccceEEcc--cEEEEcc---CC-eeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeeh
Q 001935 226 SVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS---NT-LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAM 299 (994)
Q Consensus 226 tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas---~~-~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~ 299 (994)
.+..... ...+++++ ++|.++. .. +.+|+... .+.+... .
T Consensus 123 ~~~~~~~--------------~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~------------------~g~~~~~-~- 168 (331)
T 3u4y_A 123 TIPIPYD--------------AVGIAISPNGNGLILIDRSSANTVRRFKIDA------------------DGVLFDT-G- 168 (331)
T ss_dssp EEECCTT--------------EEEEEECTTSSCEEEEEETTTTEEEEEEECT------------------TCCEEEE-E-
T ss_pred EEECCCC--------------ccceEECCCCCEEEEEecCCCceEEEEEECC------------------CCcEeec-C-
Confidence 6654222 13467766 4454432 23 44554210 0111000 0
Q ss_pred hhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE---EEEeccCCCCeEEEE
Q 001935 300 EHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI---ISQFKAHTSPISALC 376 (994)
Q Consensus 300 dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~---i~~~~aHtspIsaLa 376 (994)
. +.+ ........+.++++++.. .+....++.|.+||+.+++. +..+..+ ..+..++
T Consensus 169 --~--------~~~-------~~~~~~~~~~~spdg~~l---~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~ 227 (331)
T 3u4y_A 169 --Q--------EFI-------SGGTRPFNITFTPDGNFA---FVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIV 227 (331)
T ss_dssp --E--------EEE-------CSSSSEEEEEECTTSSEE---EEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEE
T ss_pred --C--------ccc-------cCCCCccceEECCCCCEE---EEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEE
Confidence 0 000 000000112223333321 22345688999999999887 7778765 5568899
Q ss_pred ECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc--cccc---cEEEEEEccCCCEEEEEeC
Q 001935 377 FDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG--ITSA---TIQDICFSHYSQWIAIVSS 451 (994)
Q Consensus 377 FSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG--~t~a---~I~sIaFSpDg~~LAsgS~ 451 (994)
|+|||++|+.++..+..|.+||+.. | ....+..+..+ .... .+..++|+||+++|++++.
T Consensus 228 ~spdg~~l~v~~~~~~~i~~~d~~~-------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 292 (331)
T 3u4y_A 228 VSRDGSTVYVLTESTVDVFNFNQLS-------G--------TLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISAN 292 (331)
T ss_dssp ECTTSSEEEEECSSEEEEEEEETTT-------T--------EEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEET
T ss_pred ECCCCCEEEEEEcCCCEEEEEECCC-------C--------ceeeecccccccccCCCCcccccceEECCCCCEEEEecC
Confidence 9999998877776556699999853 2 11223344333 1111 2356899999999977665
Q ss_pred -CCeEEEEecCC
Q 001935 452 -KGTCHVFVLSP 462 (994)
Q Consensus 452 -dGTVhIw~I~~ 462 (994)
+++|.||++..
T Consensus 293 ~~~~v~v~d~~~ 304 (331)
T 3u4y_A 293 ISRELKVFTISG 304 (331)
T ss_dssp TTTEEEEEETTS
T ss_pred CCCcEEEEEecC
Confidence 56999999875
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.66 E-value=5.5e-15 Score=165.55 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=48.1
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeE-EEEECCCCCEEEEEEcCCCeEEEEeC
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPIS-ALCFDPSGTLLVTASVYGNNINIFRI 399 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIs-aLaFSPdGtlLATAS~dGt~IrVwdi 399 (994)
++++.||+|+|||+.+++++.+|.+|...+. .++|+|||++|||||.|++ |||||+
T Consensus 299 ASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T-IklWd~ 355 (356)
T 2w18_A 299 AAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN-IFVYHY 355 (356)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC-EEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc-EEEecC
Confidence 3566899999999999999999999987654 6999999999999999766 999995
No 126
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=8.8e-15 Score=158.23 Aligned_cols=217 Identities=9% Similarity=0.083 Sum_probs=140.6
Q ss_pred EEEEecC-cEEEEEccC--------CCc-ceEeeeeccCCEEEEEEec--CCCCCCCCCCccccCcEEEEEecCCCCCCC
Q 001935 78 LLLGYQN-GFQVLDVED--------ASN-FNELVSKRDGPVSFLQMQP--FPVKDDGCEGFRKLHPFLLVVAGEDTNTLA 145 (994)
Q Consensus 78 L~lGy~~-G~qVWDv~~--------~g~-v~ells~hdGpV~~v~~lP--~p~~s~~~D~F~~srpLLAvVsgd~~~~~~ 145 (994)
|++|..+ .++||+.+. .+. +......|.++|.++++.| ++ .+|+..+
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------~~l~s~s-------- 146 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-------------EYFIWAD-------- 146 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---C-------------CEEEEEE--------
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-------------CEEEEEe--------
Confidence 5555554 489997641 222 2233335568899999887 43 3556432
Q ss_pred CCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC--CCcEEEEEecC--CeEEEEe-CCeEEEEECCC
Q 001935 146 PGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF--RSSVCMVRCSP--RIVAVGL-ATQIYCFDALT 220 (994)
Q Consensus 146 ~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f--~S~V~sV~~S~--~iLAVgl-~~~I~IwDa~T 220 (994)
.+++|++||+++++++..+.. ...|.++++++ ++|++|. ++.|++||+.+
T Consensus 147 -------------------------~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 147 -------------------------NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp -------------------------TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred -------------------------CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 136899999999999777643 34799999988 5788755 56899999999
Q ss_pred Ccee-EEEee-cCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEee
Q 001935 221 LENK-FSVLT-YPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA 298 (994)
Q Consensus 221 le~l-~tL~t-~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A 298 (994)
++.+ .++.. |..+ . .-|+|.+ ++..+
T Consensus 202 ~~~~~~~~~~~h~~~-------------v-------~~l~fs~---------------------------~g~~l----- 229 (343)
T 3lrv_A 202 PDQASSRFPVDEEAK-------------I-------KEVKFAD---------------------------NGYWM----- 229 (343)
T ss_dssp TTSCCEECCCCTTSC-------------E-------EEEEECT---------------------------TSSEE-----
T ss_pred CCCCccEEeccCCCC-------------E-------EEEEEeC---------------------------CCCEE-----
Confidence 8866 55543 3221 0 1122222 11111
Q ss_pred hhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc---CCCCeE--
Q 001935 299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA---HTSPIS-- 373 (994)
Q Consensus 299 ~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a---HtspIs-- 373 (994)
++++ ++.|+|||+.+++.+..+.. |..++.
T Consensus 230 --------------------------------------------~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (343)
T 3lrv_A 230 --------------------------------------------VVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTV 264 (343)
T ss_dssp --------------------------------------------EEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred --------------------------------------------EEEe-CCeEEEEEcCCCCcceeecccccccccccce
Confidence 1233 45999999999876655554 556666
Q ss_pred EEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc---CCCEEEEEe
Q 001935 374 ALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH---YSQWIAIVS 450 (994)
Q Consensus 374 aLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSp---Dg~~LAsgS 450 (994)
+++|+|+|++||+++..+..|+||++... . ..++. ..+..++|++ +.+.|++++
T Consensus 265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~------~-----------~~~~~------~~~~~~~~~~~~~~~~~l~~~~ 321 (343)
T 3lrv_A 265 TYDIDDSGKNMIAYSNESNSLTIYKFDKK------T-----------KNWTK------DEESALCLQSDTADFTDMDVVC 321 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTT------T-----------CSEEE------EEEEECCC----CCCCEEEEEE
T ss_pred EEEECCCCCEEEEecCCCCcEEEEEEccc------c-----------cceEe------cCceeEecCccccccceeEEEe
Confidence 69999999999999984456999998531 1 11221 3477899999 999999999
Q ss_pred CCCeEEEEec
Q 001935 451 SKGTCHVFVL 460 (994)
Q Consensus 451 ~dGTVhIw~I 460 (994)
.||++.++--
T Consensus 322 ~d~~~~~~~~ 331 (343)
T 3lrv_A 322 GDGGIAAILK 331 (343)
T ss_dssp ETTEEEEEEE
T ss_pred cCCceEEEEe
Confidence 9999998763
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.65 E-value=4.9e-14 Score=165.32 Aligned_cols=286 Identities=15% Similarity=0.137 Sum_probs=177.5
Q ss_pred CCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCC
Q 001935 74 FKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (994)
Q Consensus 74 ~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~ 152 (994)
+++++++++.++ +.|||.. ++++...+..+.. +..+++.|++ .+|++.+.
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~-t~~~~~~i~~g~~-~~~v~~spdg-------------~~l~v~~~-------------- 198 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGD-SKKIVKVIDTGYA-VHISRMSASG-------------RYLLVIGR-------------- 198 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETT-TCCEEEEEECSTT-EEEEEECTTS-------------CEEEEEET--------------
T ss_pred CCEEEEEEcCCCeEEEEECC-CceEEEEEecCcc-cceEEECCCC-------------CEEEEECC--------------
Confidence 467888888765 9999985 5777777764333 8899999876 35565321
Q ss_pred ccccccCCcCCCCCCCCCCCCEEEEEEC--CCCeEEEEEeCCCcEEEEEecC------CeEEEEe--CCeEEEEECCCCc
Q 001935 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSF--QSHCYEHVLRFRSSVCMVRCSP------RIVAVGL--ATQIYCFDALTLE 222 (994)
Q Consensus 153 ~~~vr~g~~d~~~~~~~~sp~tVrLWDl--ktge~V~tL~f~S~V~sV~~S~------~iLAVgl--~~~I~IwDa~Tle 222 (994)
+++|++||+ ++++++.++.....++.|++++ ++|+++. +++|.+||..+++
T Consensus 199 -------------------d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 199 -------------------DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp -------------------TSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred -------------------CCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 258999999 8999999999877899999986 4676654 6799999999999
Q ss_pred eeEEEeecCCccccCCCccccccCccceEEcc---cEEEEccC--CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEe
Q 001935 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP---RWLAYASN--TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY 297 (994)
Q Consensus 223 ~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp---RwLAyas~--~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~ 297 (994)
.+.++.+...... .+.+.. ......+++++ ++++.... .+.+|+.... ..+..
T Consensus 260 ~~~~i~~~g~~~~-~~~~~~-~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~------------------~~l~~-- 317 (543)
T 1nir_A 260 PKQIVSTRGMTVD-TQTYHP-EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI------------------DNLTV-- 317 (543)
T ss_dssp EEEEEECCEECSS-SCCEES-CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTS------------------SSCEE--
T ss_pred cceeecccCcccC-cccccc-CCceEEEEECCCCCEEEEEECCCCeEEEEEecCC------------------Cccee--
Confidence 9988875321000 000000 00012244443 33332221 2334442100 00000
Q ss_pred ehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc----CCCCeE
Q 001935 298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA----HTSPIS 373 (994)
Q Consensus 298 A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a----HtspIs 373 (994)
.++. .......+.+++++++. ++....+++|.|||+.+++++..+.. |.....
T Consensus 318 -------------~~i~-------~~~~~~~~~~spdg~~l---~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~ 374 (543)
T 1nir_A 318 -------------TSIG-------AAPFLHDGGWDSSHRYF---MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA 374 (543)
T ss_dssp -------------EEEE-------CCSSCCCEEECTTSCEE---EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred -------------EEec-------cCcCccCceECCCCCEE---EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCc
Confidence 0000 00001112233444322 23445678999999999999988875 655444
Q ss_pred EEEECCC-CCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe--
Q 001935 374 ALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-- 450 (994)
Q Consensus 374 aLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS-- 450 (994)
.+ ++|+ |.++||++..+..|.||++.+. +.. ....+.+.++. ++ ...+..|+|+|||++|++++
T Consensus 375 ~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~------~~~----~~~~~~v~~l~-~~-g~~~~~v~~~pdg~~l~v~~~~ 441 (543)
T 1nir_A 375 NF-VHPKYGPVWSTSHLGDGSISLIGTDPK------NHP----QYAWKKVAELQ-GQ-GGGSLFIKTHPKSSHLYVDTTF 441 (543)
T ss_dssp EE-EETTTEEEEEEEBSSSSEEEEEECCTT------TCT----TTBTSEEEEEE-CS-CSCCCCEECCTTCCEEEECCTT
T ss_pred cc-CCCCCccEEEeccCCCceEEEEEeCCC------CCc----hhcCeEEEEEE-cC-CCCceEEEcCCCCCcEEEecCC
Confidence 44 5787 7788887644466999998652 100 11124666765 22 23568899999999999998
Q ss_pred -----CCCeEEEEecCCCCC
Q 001935 451 -----SKGTCHVFVLSPFGG 465 (994)
Q Consensus 451 -----~dGTVhIw~I~~~gg 465 (994)
.+++|.||++.....
T Consensus 442 ~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 442 NPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp CSSHHHHTCEEEEETTCTTS
T ss_pred CCCcccCceEEEEECCCCCC
Confidence 378999999988654
No 128
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.65 E-value=2.7e-14 Score=155.13 Aligned_cols=212 Identities=14% Similarity=0.082 Sum_probs=145.6
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeE-EEE-eCCeEEEEECCCCceeEEEeecCCccccCCCccccccCc
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIV-AVG-LATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iL-AVg-l~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~ 247 (994)
+++|++||+++++++..+..+..+.++++++ +.| +++ .++.|++||+.+++.+..+..+.. .
T Consensus 11 d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~--------------v 76 (391)
T 1l0q_A 11 SDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS--------------P 76 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS--------------E
T ss_pred CCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCC--------------c
Confidence 4789999999999999999988999999988 455 444 467899999999988777654321 2
Q ss_pred cceEEcc--cEEEEcc---CCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccC
Q 001935 248 GPMAVGP--RWLAYAS---NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP 322 (994)
Q Consensus 248 gplAlgp--RwLAyas---~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p 322 (994)
..+++++ ++|++++ ..+.+|+... +..+..+..
T Consensus 77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~-------------------~~~~~~~~~----------------------- 114 (391)
T 1l0q_A 77 QGVAVSPDGKQVYVTNMASSTLSVIDTTS-------------------NTVAGTVKT----------------------- 114 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTT-------------------TEEEEEEEC-----------------------
T ss_pred cceEECCCCCEEEEEECCCCEEEEEECCC-------------------CeEEEEEeC-----------------------
Confidence 3467776 6666554 2456676310 111110000
Q ss_pred CCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCC
Q 001935 323 DGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPS 402 (994)
Q Consensus 323 ~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~ 402 (994)
......+.++++++.. .+.+..++.|.+||+.+++.+..+..|. .+..++|+|+|++|+.++..+..|++||+..
T Consensus 115 ~~~~~~~~~s~dg~~l---~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~- 189 (391)
T 1l0q_A 115 GKSPLGLALSPDGKKL---YVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVT- 189 (391)
T ss_dssp SSSEEEEEECTTSSEE---EEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT-
T ss_pred CCCcceEEECCCCCEE---EEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCC-
Confidence 0000011122222211 1345678999999999999998888875 4699999999998854444456699999853
Q ss_pred cccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe---CCCeEEEEecCCC
Q 001935 403 CMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS---SKGTCHVFVLSPF 463 (994)
Q Consensus 403 ~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS---~dGTVhIw~I~~~ 463 (994)
+ ..+..+.. ...+.+++|+||+++|++++ .+++|++|++...
T Consensus 190 ------~----------~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 190 ------N----------SVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp ------T----------EEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred ------C----------eEEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 2 34444432 24689999999999999998 6899999998754
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.64 E-value=1.3e-14 Score=161.25 Aligned_cols=225 Identities=13% Similarity=0.093 Sum_probs=132.1
Q ss_pred CCCCCCcEEEEEEeeccCCCC-CCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCcccc
Q 001935 52 SEDLKDQVTWAGFDRLEYGPS-VFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 52 ~~~~kd~V~wa~Fd~le~~~~-~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~s 129 (994)
..+|++.|.-+.|........ .++++|++|..++ ++|||+...+ ....+..|.++|..++|.|+..
T Consensus 132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~-~~~~~~~~~~~v~~v~~~p~~~----------- 199 (393)
T 4gq1_A 132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG-PILAGYPLSSPGISVQFRPSNP----------- 199 (393)
T ss_dssp TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE-EEEEEEECSSCEEEEEEETTEE-----------
T ss_pred cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc-eeeeecCCCCCcEEEEECCCCC-----------
Confidence 578999999999975433221 2567888887766 9999996544 4444556778999999998641
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe-------------------
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR------------------- 190 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~------------------- 190 (994)
.+|++.+ .+++|+|||+++++....+.
T Consensus 200 -~~l~~~~---------------------------------~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 200 -NQLIVGE---------------------------------RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp -EEEEEEE---------------------------------TTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred -ceEEecC---------------------------------CCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 2455422 14789999999987655432
Q ss_pred -------CCCcEEEEEecC---CeEEEEe-CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccceEEcccEEEE
Q 001935 191 -------FRSSVCMVRCSP---RIVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAY 259 (994)
Q Consensus 191 -------f~S~V~sV~~S~---~iLAVgl-~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAy 259 (994)
+...|..+++.. +.|+++. ++.|++||+.+.+....+..+... ...+++.+..-..
T Consensus 246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~-------------~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMK-------------LGPKNLLPNVQGI 312 (393)
T ss_dssp ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------------------CCSCSEEEE
T ss_pred eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCc-------------cccEEEccccccc
Confidence 123566777753 4566554 568999999887665554433210 0011111100000
Q ss_pred ccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCcccccc
Q 001935 260 ASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGR 339 (994)
Q Consensus 260 as~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~ 339 (994)
.. .. ......+ .+ .. ..
T Consensus 313 ~~---------------~~-~~~~~~~----------------------------------~~---------~~----~~ 329 (393)
T 4gq1_A 313 SL---------------FP-SLLGACP----------------------------------HP---------RY----MD 329 (393)
T ss_dssp CS---------------SC-CSSCCEE----------------------------------CS---------SC----TT
T ss_pred cc---------------cC-cceeEEE----------------------------------cc---------CC----CC
Confidence 00 00 0000000 00 00 01
Q ss_pred ccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCC
Q 001935 340 HAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 340 ~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (994)
..++.++.||.|+|||+.+++.+..+..|..+|.+|+|+|||++||+|+.+| +.+|++.
T Consensus 330 ~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G--v~lvrL~ 388 (393)
T 4gq1_A 330 YFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS--VLLTRLM 388 (393)
T ss_dssp EEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE--EEEEEEG
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEEe
Confidence 1234677899999999999998888999999999999999999999999843 6778764
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.63 E-value=8.4e-14 Score=146.75 Aligned_cols=276 Identities=13% Similarity=0.104 Sum_probs=157.0
Q ss_pred eEEEEEec-CcEEEEEccCCCcceEee-eeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCc
Q 001935 76 QVLLLGYQ-NGFQVLDVEDASNFNELV-SKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (994)
Q Consensus 76 ~vL~lGy~-~G~qVWDv~~~g~v~ell-s~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~ 153 (994)
.++++++. +.+++||++..+....+. -.+.+.+..+++.|++ .+|+++..+
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-------------~~l~~~~~~-------------- 58 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDK-------------RYLYVGVRP-------------- 58 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTS-------------SEEEEEETT--------------
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCC-------------CEEEEeecC--------------
Confidence 34444354 559999996555443332 2355678888888765 355653311
Q ss_pred cccccCCcCCCCCCCCCCCCEEEEEECC--CCe--EEEEEeCCCcEEEEEecC--CeEEEEe--CCeEEEEECCC---Cc
Q 001935 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQ--SHC--YEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALT---LE 222 (994)
Q Consensus 154 ~~vr~g~~d~~~~~~~~sp~tVrLWDlk--tge--~V~tL~f~S~V~sV~~S~--~iLAVgl--~~~I~IwDa~T---le 222 (994)
.++|++|++. +++ .+..+.....+..+++++ +.|+++. ++.|++||+.+ .+
T Consensus 59 ------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~ 120 (343)
T 1ri6_A 59 ------------------EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG 120 (343)
T ss_dssp ------------------TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE
T ss_pred ------------------CCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccc
Confidence 2589999997 665 445566556788899987 4565554 45799999843 33
Q ss_pred eeEEEeecCCccccCCCccccccCccceEEcc--cEEEEcc---CCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEe
Q 001935 223 NKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYAS---NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY 297 (994)
Q Consensus 223 ~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas---~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~ 297 (994)
....+..... ...+++++ ++|+.+. ..+.+|+... .+.+....
T Consensus 121 ~~~~~~~~~~--------------~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~------------------~~~~~~~~ 168 (343)
T 1ri6_A 121 VVDVVEGLDG--------------CHSANISPDNRTLWVPALKQDRICLFTVSD------------------DGHLVAQD 168 (343)
T ss_dssp EEEEECCCTT--------------BCCCEECTTSSEEEEEEGGGTEEEEEEECT------------------TSCEEEEE
T ss_pred ccccccCCCC--------------ceEEEECCCCCEEEEecCCCCEEEEEEecC------------------CCceeeec
Confidence 3333322211 23466766 5565543 3455665210 01110000
Q ss_pred ehhhhhhhhcccceeeccccccccCCC-CCCCccCCCccccccccccccCCCCeEEEEECCC--CcE--EEEec---cC-
Q 001935 298 AMEHSKQFAAGLSKTLSKYCQELLPDG-SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT--RAI--ISQFK---AH- 368 (994)
Q Consensus 298 A~dssk~la~Gi~ktlS~y~~~l~p~~-s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s--~~~--i~~~~---aH- 368 (994)
. . .+ ..+.+ ....+.++++++.. .+....++.|.+||+.. ++. +..+. .+
T Consensus 169 ~---------~---~~------~~~~~~~~~~~~~~pdg~~l---~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (343)
T 1ri6_A 169 P---------A---EV------TTVEGAGPRHMVFHPNEQYA---YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF 227 (343)
T ss_dssp E---------E---EE------ECSTTCCEEEEEECTTSSEE---EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred c---------c---cc------ccCCCCCcceEEECCCCCEE---EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence 0 0 00 00000 00011223333211 12345788999999954 332 22222 22
Q ss_pred --CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 001935 369 --TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (994)
Q Consensus 369 --tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (994)
...+..++|+|+|++|+.+...+..|+||++... .+ ....+..+..+ ..+.+++|+|||++|
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~-----~~--------~~~~~~~~~~~---~~~~~~~~s~dg~~l 291 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSED-----GS--------VLSKEGFQPTE---TQPRGFNVDHSGKYL 291 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----SC--------CEEEEEEEECS---SSCCCEEECTTSSEE
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC-----CC--------ceEEeeeecCC---CccceEEECCCCCEE
Confidence 2356789999999988866654567999998631 01 11334444322 237889999999999
Q ss_pred EEEe-CCCeEEEEecCCCCC
Q 001935 447 AIVS-SKGTCHVFVLSPFGG 465 (994)
Q Consensus 447 AsgS-~dGTVhIw~I~~~gg 465 (994)
++++ .+++++||++++..+
T Consensus 292 ~~~~~~~~~v~v~~~d~~~g 311 (343)
T 1ri6_A 292 IAAGQKSHHISVYEIVGEQG 311 (343)
T ss_dssp EEECTTTCEEEEEEEETTTT
T ss_pred EEecCCCCeEEEEEEcCCCc
Confidence 9988 689999999887554
No 131
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.5e-14 Score=167.86 Aligned_cols=234 Identities=12% Similarity=0.099 Sum_probs=151.7
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEecCc-EEEEEccCCCcceEeeeeccCC-----EEEEEEecCCCCCCCCCCcccc
Q 001935 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQNG-FQVLDVEDASNFNELVSKRDGP-----VSFLQMQPFPVKDDGCEGFRKL 129 (994)
Q Consensus 56 kd~V~wa~Fd~le~~~~~~~~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGp-----V~~v~~lP~p~~s~~~D~F~~s 129 (994)
.+.|.-+.|. ++++.|+++..+| ++|||.+. +...+. |+.+ |.+++|+|++
T Consensus 85 ~~~V~~vawS-------PdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG------------ 141 (588)
T 2j04_A 85 VCYPRVCKPS-------PIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIE------------ 141 (588)
T ss_dssp SCCEEEEEEC-------SSSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSS------------
T ss_pred CCcEEEEEEC-------CCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCC------------
Confidence 3445555553 4677777777766 89999632 666677 7764 9999999987
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCe-------EEEEEeC-----CCcEEE
Q 001935 130 HPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHC-------YEHVLRF-----RSSVCM 197 (994)
Q Consensus 130 rpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge-------~V~tL~f-----~S~V~s 197 (994)
.+||+.+. +++|+|||++++. .+++++. .+.|++
T Consensus 142 -~~LAsgs~---------------------------------DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~s 187 (588)
T 2j04_A 142 -SSIVVGNE---------------------------------DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTH 187 (588)
T ss_dssp -SCEEEEET---------------------------------TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEE
T ss_pred -CEEEEEcC---------------------------------CCEEEEEECCCCccccccceeeeeeecccccccccEEE
Confidence 35676321 3799999999986 4677743 248999
Q ss_pred EEecCCeEEE-EeCCeEEEEECCCCce---eEEEe-ecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCcc
Q 001935 198 VRCSPRIVAV-GLATQIYCFDALTLEN---KFSVL-TYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRL 272 (994)
Q Consensus 198 V~~S~~iLAV-gl~~~I~IwDa~Tle~---l~tL~-t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~ 272 (994)
|+|+|+-||+ +.++.|++||+.+.+. .+++. .|... ... +||.+
T Consensus 188 VawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~-------------V~s-------vaFsg----------- 236 (588)
T 2j04_A 188 IVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK-------------ITD-------LKIVD----------- 236 (588)
T ss_dssp EEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC-------------CCC-------EEEET-----------
T ss_pred EEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCc-------------EEE-------EEEEC-----------
Confidence 9999854554 5567899999987663 23442 11110 001 11111
Q ss_pred CCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEE
Q 001935 273 SPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVV 352 (994)
Q Consensus 273 s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~ 352 (994)
. .++++. +|+|+
T Consensus 237 ------------------~-------------------------------------------------~LASa~-~~tIk 248 (588)
T 2j04_A 237 ------------------Y-------------------------------------------------KVVLTC-PGYVH 248 (588)
T ss_dssp ------------------T-------------------------------------------------EEEEEC-SSEEE
T ss_pred ------------------C-------------------------------------------------EEEEEe-CCeEE
Confidence 0 011233 58999
Q ss_pred EEECCCCcEEEEeccCCCCeEEEEE--CCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCC-------ccccCCcceEEE
Q 001935 353 VKDFVTRAIISQFKAHTSPISALCF--DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH-------KYDWNSSHVHLY 423 (994)
Q Consensus 353 VwDl~s~~~i~~~~aHtspIsaLaF--SPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~-------~~~~~~s~~~l~ 423 (994)
+||+.+++......+|...|..++| +|||+.|++|+++|+ |||.... ...+..+.. -.-|......+.
T Consensus 249 LWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~--klw~~d~-~~~spd~~l~a~~d~~v~lW~~~g~~l~ 325 (588)
T 2j04_A 249 KIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY--KVLLEDE-LHVTADNIIAPYLEKKFKKWSTIWNEFN 325 (588)
T ss_dssp EEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE--EEEESSS-EEEECCCSSHHHHHHHHHHTTTTTTSSS
T ss_pred EEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC--EEEeecc-EEECCCceEEEEcCCEEEEEECCCCcee
Confidence 9999988774444489999999999 999999999999776 9998731 100000110 001222112222
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeC
Q 001935 424 KLHRGITSATIQDICFSHYSQWIAIVSS 451 (994)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~LAsgS~ 451 (994)
.+ .+ +..|++++|||||+.||+++.
T Consensus 326 ~~-~~--~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 326 NY-ET--TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SS-CC--EEEEEEEEECTTSSEEEEEEE
T ss_pred ee-cc--ceEEEEEEECCCCCEEEEEEe
Confidence 22 22 456999999999999999863
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.57 E-value=2.1e-13 Score=139.31 Aligned_cols=216 Identities=9% Similarity=0.004 Sum_probs=139.1
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCC-CceeEEEeecCCccccCCCccccccCcc
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALT-LENKFSVLTYPVPQLAGQGAVGINVGYG 248 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVgl~~~I~IwDa~T-le~l~tL~t~p~p~~~~~g~~~vnv~~g 248 (994)
+++|++||+.+++....+.+...|.++++++ ++|+++.++.|++||+.+ .+.......+... ...
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------------~~~ 88 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATI------------CNN 88 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCC------------BCS
T ss_pred ceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccc------------ccc
Confidence 5799999999999887777888999999998 688888899999999998 7654332222110 123
Q ss_pred ceEEcc--cEEEEccC----CeeeccC--CccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccc
Q 001935 249 PMAVGP--RWLAYASN----TLLLSNS--GRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQEL 320 (994)
Q Consensus 249 plAlgp--RwLAyas~----~~~iwd~--G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l 320 (994)
.+++++ ++|++... ...+|.. .....+.+.. .
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------------------------------~---- 128 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTK------------------------------------N---- 128 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCS------------------------------------S----
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeec------------------------------------C----
Confidence 467776 78888762 2334431 0000000000 0
Q ss_pred cCCCCCCCccCCCccccccccccccCCCCeEEEEECCC-CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeC
Q 001935 321 LPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI 399 (994)
Q Consensus 321 ~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s-~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (994)
.....+.++++.+.. ...+..++.++||++.. ......+..|...+.+++|+|+|++|+.++..+..++||++
T Consensus 129 ---~~~~~~~~spdg~~l---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~ 202 (297)
T 2ojh_A 129 ---LPSYWHGWSPDGKSF---TYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRV 202 (297)
T ss_dssp ---SSEEEEEECTTSSEE---EEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ---CCccceEECCCCCEE---EEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEE
Confidence 000001122222211 11345678889998632 23456778888999999999999998887753445899998
Q ss_pred CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC-----------CeEEEEecCCC
Q 001935 400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-----------GTCHVFVLSPF 463 (994)
Q Consensus 400 ~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~d-----------GTVhIw~I~~~ 463 (994)
... + ..+..+.. +...+.+++|+||+++|++++.+ +++.+|++...
T Consensus 203 ~~~------~----------~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 203 RVD------G----------SSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp ETT------S----------SCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred CCC------C----------CCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 532 1 13344432 23468999999999999999877 46888887653
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.56 E-value=1e-12 Score=154.08 Aligned_cols=276 Identities=10% Similarity=0.069 Sum_probs=171.1
Q ss_pred CCCeEEEEEec-CcEEEEEcc-CCCcceEeeeeccCCEEEEEEec----CCCCCCCCCCccccCcEEEEEecCCCCCCCC
Q 001935 73 VFKQVLLLGYQ-NGFQVLDVE-DASNFNELVSKRDGPVSFLQMQP----FPVKDDGCEGFRKLHPFLLVVAGEDTNTLAP 146 (994)
Q Consensus 73 ~~~~vL~lGy~-~G~qVWDv~-~~g~v~ells~hdGpV~~v~~lP----~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~ 146 (994)
++++.|+++.. +.+.+||+. .++.+...+. +...++.+++.| ++ .+|++...
T Consensus 188 pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg-------------~~l~v~~~-------- 245 (543)
T 1nir_A 188 ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYED-------------RYTIAGAY-------- 245 (543)
T ss_dssp TTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTT-------------TEEEEEEE--------
T ss_pred CCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCC-------------CEEEEEEc--------
Confidence 35555555554 559999993 2355555554 344578899988 54 35554321
Q ss_pred CCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC------------CcEEEEEecC--CeEEEEe--C
Q 001935 147 GQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR------------SSVCMVRCSP--RIVAVGL--A 210 (994)
Q Consensus 147 ~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~------------S~V~sV~~S~--~iLAVgl--~ 210 (994)
.+++|.+||..+++++.++..+ ..|.+|.+++ +.++++. +
T Consensus 246 ------------------------~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 246 ------------------------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp ------------------------ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred ------------------------cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 1468999999999999998652 2688999987 4455444 4
Q ss_pred CeEEEEECCCCceeE--EEeecCCccccCCCccccccCccceEEcc--cEEEEc---cCCeeeccCCccCCCcCCCCCCC
Q 001935 211 TQIYCFDALTLENKF--SVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYA---SNTLLLSNSGRLSPQNLTPSGVS 283 (994)
Q Consensus 211 ~~I~IwDa~Tle~l~--tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAya---s~~~~iwd~G~~s~qsltp~~~S 283 (994)
++|.+||..+.+.+. ++..... ...++|+| ++|..+ .+.+.+||..
T Consensus 302 g~i~vvd~~~~~~l~~~~i~~~~~--------------~~~~~~spdg~~l~va~~~~~~v~v~D~~------------- 354 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIGAAPF--------------LHDGGWDSSHRYFMTAANNSNKVAVIDSK------------- 354 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEECCSS--------------CCCEEECTTSCEEEEEEGGGTEEEEEETT-------------
T ss_pred CeEEEEEecCCCcceeEEeccCcC--------------ccCceECCCCCEEEEEecCCCeEEEEECC-------------
Confidence 589999999877654 3321111 12367776 654322 3456677631
Q ss_pred CCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccC-CCCeEEEEECCC----
Q 001935 284 PSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMD-NAGIVVVKDFVT---- 358 (994)
Q Consensus 284 ~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s-~dG~V~VwDl~s---- 358 (994)
.+.++..+.. |. .-.+. ....+ +++... ...+++. .+++|.|||+.+
T Consensus 355 ------tg~l~~~i~~--------g~---------~ph~g-~g~~~-~~p~~g---~~~~s~~~~d~~V~v~d~~~~~~~ 406 (543)
T 1nir_A 355 ------DRRLSALVDV--------GK---------TPHPG-RGANF-VHPKYG---PVWSTSHLGDGSISLIGTDPKNHP 406 (543)
T ss_dssp ------TTEEEEEEEC--------SS---------SBCCT-TCEEE-EETTTE---EEEEEEBSSSSEEEEEECCTTTCT
T ss_pred ------CCeEEEeecc--------CC---------CCCCC-CCccc-CCCCCc---cEEEeccCCCceEEEEEeCCCCCc
Confidence 1112111100 00 00000 00000 011111 1123333 579999999998
Q ss_pred ---CcEEEEeccCCCCeEEEEECCCCCEEEEEEcC------CCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-c-
Q 001935 359 ---RAIISQFKAHTSPISALCFDPSGTLLVTASVY------GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH-R- 427 (994)
Q Consensus 359 ---~~~i~~~~aHtspIsaLaFSPdGtlLATAS~d------Gt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~-R- 427 (994)
.+++.+|..|...+..|+|+|||++|++++.- +..|.|||+.. + ..+|+.. -
T Consensus 407 ~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~-------~----------~~~~~~~~v~ 469 (543)
T 1nir_A 407 QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN-------L----------DAKYQVLPIA 469 (543)
T ss_dssp TTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTC-------T----------TSCCEEECHH
T ss_pred hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCC-------C----------CCCeEEeech
Confidence 88999999999999999999999999998721 33599999964 2 1222221 0
Q ss_pred -----ccccccEEEEEEccCCCEEEEEe-----CCCeEEEEecCCCCCC
Q 001935 428 -----GITSATIQDICFSHYSQWIAIVS-----SKGTCHVFVLSPFGGD 466 (994)
Q Consensus 428 -----G~t~a~I~sIaFSpDg~~LAsgS-----~dGTVhIw~I~~~gg~ 466 (994)
+.....++.++|+|||++|.++. .+++|.||+..+.+..
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 470 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp HHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred hhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 11134689999999999999873 4799999998876543
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.54 E-value=8.4e-13 Score=148.54 Aligned_cols=94 Identities=18% Similarity=0.119 Sum_probs=70.9
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC--eEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt--~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
+..|.+||+.+++. ..+..|...+.+++|+|||++|++++.++. .|.+|++.. + .+..+
T Consensus 246 ~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-------~-----------~~~~l 306 (415)
T 2hqs_A 246 SLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-------G-----------APQRI 306 (415)
T ss_dssp SCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-------S-----------CCEEC
T ss_pred CceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-------C-----------CEEEE
Confidence 34699999998875 678889999999999999999998886443 466667642 2 11222
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCC---CeEEEEecCC
Q 001935 426 HRGITSATIQDICFSHYSQWIAIVSSK---GTCHVFVLSP 462 (994)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~LAsgS~d---GTVhIw~I~~ 462 (994)
.. +...+.+++|||||++|++++.+ .+|++|++..
T Consensus 307 ~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 307 TW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 344 (415)
T ss_dssp CC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred ec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence 21 23468899999999999998875 5889999864
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.54 E-value=2.7e-13 Score=160.88 Aligned_cols=320 Identities=10% Similarity=0.025 Sum_probs=173.5
Q ss_pred CCcEEEEEEeeccCCCCCCCeEEEEEec-C------cEEEEEccCCCcceEeeeeccCC---------------------
Q 001935 56 KDQVTWAGFDRLEYGPSVFKQVLLLGYQ-N------GFQVLDVEDASNFNELVSKRDGP--------------------- 107 (994)
Q Consensus 56 kd~V~wa~Fd~le~~~~~~~~vL~lGy~-~------G~qVWDv~~~g~v~ells~hdGp--------------------- 107 (994)
...|..+.|. ++++.|+.+.. + .+.+||++ +++...++..+...
T Consensus 36 ~~~~~~~~~S-------pdG~~la~~~~~d~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 36 GPTLMKPKVA-------PDGSRVTFLRGKDSDRNQLDLWSYDIG-SGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCCCEEEEEC-------TTSSEEEEEECCSSCTTEEEEEEEETT-TCCEEEEECGGGTC--------------------C
T ss_pred CCCCCCceEe-------cCCCEEEEEeccCCCCcccEEEEEECC-CCceeEccchhhcccccccccchhhhhhhhhhhcc
Confidence 4557777775 35666666554 4 48999995 57777777655432
Q ss_pred ---EEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCC-
Q 001935 108 ---VSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH- 183 (994)
Q Consensus 108 ---V~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktg- 183 (994)
|..++++|++ .+|++.+ .++|.+||+.++
T Consensus 108 ~~~v~~~~~SpDg-------------~~l~~~~----------------------------------~~~i~~~d~~~~~ 140 (741)
T 2ecf_A 108 MTGIVDYQWSPDA-------------QRLLFPL----------------------------------GGELYLYDLKQEG 140 (741)
T ss_dssp CEESCCCEECTTS-------------SEEEEEE----------------------------------TTEEEEEESSSCS
T ss_pred ccCcceeEECCCC-------------CEEEEEe----------------------------------CCcEEEEECCCCC
Confidence 5566666654 3555532 157999999998
Q ss_pred --eEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccc-c----ccCccceEEcc
Q 001935 184 --CYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVG-I----NVGYGPMAVGP 254 (994)
Q Consensus 184 --e~V~tL~f~S~V~sV~~S~--~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~-v----nv~~gplAlgp 254 (994)
+..........+..++|+| +.||.+.+++|++||+.+.+............. .+... + ......++++|
T Consensus 141 ~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~--~g~~~~v~~~~~~~~~~~~~Sp 218 (741)
T 2ecf_A 141 KAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIG--NGIAEFVADEEMDRHTGYWWAP 218 (741)
T ss_dssp TTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEE--ESCCCHHHHHHSCCCCSEEECT
T ss_pred cceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCcccee--ccccceeeeeccccccceEECC
Confidence 5433233446899999998 688888888999999988765432211111000 00000 0 00013478887
Q ss_pred --cEEEEccCC---eeeccCCccCCC-----cCCCCCCCCCcCCCCCceEEEeehhhhhhhhc-ccceeeccccccccCC
Q 001935 255 --RWLAYASNT---LLLSNSGRLSPQ-----NLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA-GLSKTLSKYCQELLPD 323 (994)
Q Consensus 255 --RwLAyas~~---~~iwd~G~~s~q-----sltp~~~S~stSp~~gsLVa~~A~dssk~la~-Gi~ktlS~y~~~l~p~ 323 (994)
++|||.... ...+..+...+. .+..+ .... .++.... +. +++.. |....+.... ...
T Consensus 219 Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~---~~g~-~~~~~~l-~~----~d~~~~~~~~~~~~~~---~~~ 286 (741)
T 2ecf_A 219 DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP---AAGD-ANVQVKL-GV----ISPAEQAQTQWIDLGK---EQD 286 (741)
T ss_dssp TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC---BTTS-CCCEEEE-EE----ECSSTTCCCEEECCCS---CSS
T ss_pred CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC---CCCC-CCCeeEE-EE----EECCCCCceEEecCCC---Ccc
Confidence 788887421 001100000000 00000 0000 0000000 00 01111 1111100000 000
Q ss_pred CCCCCccCCCcccccccccc-ccCCCCeEEEEECCCCcEEEEeccCCC----CeEEEEECCCCCEEEEEEcCCCeEEEEe
Q 001935 324 GSSSPVSPNSVWKVGRHAGA-DMDNAGIVVVKDFVTRAIISQFKAHTS----PISALCFDPSGTLLVTASVYGNNINIFR 398 (994)
Q Consensus 324 ~s~s~~s~s~~~k~g~~~~a-s~s~dG~V~VwDl~s~~~i~~~~aHts----pIsaLaFSPdGtlLATAS~dGt~IrVwd 398 (994)
.......+ ++++...+... ....++.|.+||+.+++....+..|.. .+..++|+|||++|++++.+|+ ++||.
T Consensus 287 ~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~ 364 (741)
T 2ecf_A 287 IYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGF-QHLYR 364 (741)
T ss_dssp EEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSS-CEEEE
T ss_pred eEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCc-cEEEE
Confidence 00011122 33332221111 223567899999999988877777654 5678999999999999888775 78888
Q ss_pred CCCCcccCCCCCCccccCCcceEEEEEecccccccEEEE-EEccCCCEEEEEeC-CC--eEEEEecCCCCC
Q 001935 399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDI-CFSHYSQWIAIVSS-KG--TCHVFVLSPFGG 465 (994)
Q Consensus 399 i~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sI-aFSpDg~~LAsgS~-dG--TVhIw~I~~~gg 465 (994)
+... | . +..|..+ ...|.++ +||||+++|+..+. ++ +++||.+...++
T Consensus 365 ~~~~------~----------~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 365 IDSK------G----------K-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp ECSS------S----------C-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred EcCC------C----------C-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 7421 2 2 3444333 3457777 59999998866554 44 899999976544
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.52 E-value=2.7e-11 Score=128.66 Aligned_cols=174 Identities=13% Similarity=0.095 Sum_probs=122.2
Q ss_pred CEEEEEECCCCeEEEEEeCCC----------cEEEEEecC--CeEEEEe---CCeEEEEECCCCceeEEEeecCCccccC
Q 001935 173 TAVRFYSFQSHCYEHVLRFRS----------SVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLTYPVPQLAG 237 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S----------~V~sV~~S~--~iLAVgl---~~~I~IwDa~Tle~l~tL~t~p~p~~~~ 237 (994)
+.|.+||+++++.+..+.... .+.++.+++ +.|+++. ++.|++||+.+.+....+......
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---- 186 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKM---- 186 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTT----
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCc----
Confidence 589999999999999998743 268888877 5566654 557999999998876665421110
Q ss_pred CCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeecccc
Q 001935 238 QGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYC 317 (994)
Q Consensus 238 ~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~ 317 (994)
...+++ +|++..++
T Consensus 187 ---------~~~~~~----------------------------------s~dg~~l~----------------------- 200 (353)
T 3vgz_A 187 ---------STGLAL----------------------------------DSEGKRLY----------------------- 200 (353)
T ss_dssp ---------CCCCEE----------------------------------ETTTTEEE-----------------------
T ss_pred ---------cceEEE----------------------------------CCCCCEEE-----------------------
Confidence 011122 12222111
Q ss_pred ccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc----CCCCeEEEEECCCCCEEEEEEcCCCe
Q 001935 318 QELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA----HTSPISALCFDPSGTLLVTASVYGNN 393 (994)
Q Consensus 318 ~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a----HtspIsaLaFSPdGtlLATAS~dGt~ 393 (994)
.+..++.|.+||+.+++.+..+.. |...+..++|+|+|++|+.++..+..
T Consensus 201 --------------------------~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 254 (353)
T 3vgz_A 201 --------------------------TTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE 254 (353)
T ss_dssp --------------------------EECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE
T ss_pred --------------------------EEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE
Confidence 123467899999999998887775 56678889999999998888876678
Q ss_pred EEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEecCCC
Q 001935 394 INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF 463 (994)
Q Consensus 394 IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS-~dGTVhIw~I~~~ 463 (994)
|.+||+.. + ..+..+.-+. -..++|+||+++|+++. .+++|++|++...
T Consensus 255 v~~~d~~~-------~----------~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 255 VLVVDTRN-------G----------NILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp EEEEETTT-------C----------CEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred EEEEECCC-------C----------cEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 99999853 3 3444444332 14699999999777666 6899999998653
No 137
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.50 E-value=1e-11 Score=134.44 Aligned_cols=290 Identities=11% Similarity=0.170 Sum_probs=158.1
Q ss_pred CcEEEEEccC-CCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcC
Q 001935 84 NGFQVLDVED-ASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMD 162 (994)
Q Consensus 84 ~G~qVWDv~~-~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d 162 (994)
.++.+|.++. ++++..+...+...+..+++.|++ .+|+++..++.
T Consensus 27 ~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg-------------~~l~~~~~~~~--------------------- 72 (361)
T 3scy_A 27 KGIYTFRFNEETGESLPLSDAEVANPSYLIPSADG-------------KFVYSVNEFSK--------------------- 72 (361)
T ss_dssp CEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTS-------------SEEEEEECCSS---------------------
T ss_pred CCEEEEEEeCCCCCEEEeecccCCCCceEEECCCC-------------CEEEEEEccCC---------------------
Confidence 3699998864 355554443356677788888765 35665432100
Q ss_pred CCCCCCCCCCCEEEEEECCC--CeE--EEEEe-CCCcEEEEEecCCeEEEEe--CCeEEEEECCCCceeEEE---eecCC
Q 001935 163 SQSGNCVNSPTAVRFYSFQS--HCY--EHVLR-FRSSVCMVRCSPRIVAVGL--ATQIYCFDALTLENKFSV---LTYPV 232 (994)
Q Consensus 163 ~~~~~~~~sp~tVrLWDlkt--ge~--V~tL~-f~S~V~sV~~S~~iLAVgl--~~~I~IwDa~Tle~l~tL---~t~p~ 232 (994)
..+.|++|++.. |+. +..+. ....+..++++.++|+++. ++.|.+||+.+...+..+ ..+..
T Consensus 73 --------~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g 144 (361)
T 3scy_A 73 --------DQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKG 144 (361)
T ss_dssp --------TTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCC
T ss_pred --------CCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccC
Confidence 126899998765 543 33333 2346777777777777765 457999998754332211 11111
Q ss_pred --ccccCCCccccccCccceEEcc--cEEEEccC---CeeeccCCccCCCcCCCCCCCCCcCCCCCc-eEEEeehhhhhh
Q 001935 233 --PQLAGQGAVGINVGYGPMAVGP--RWLAYASN---TLLLSNSGRLSPQNLTPSGVSPSTSPGGSS-LVARYAMEHSKQ 304 (994)
Q Consensus 233 --p~~~~~g~~~vnv~~gplAlgp--RwLAyas~---~~~iwd~G~~s~qsltp~~~S~stSp~~gs-LVa~~A~dssk~ 304 (994)
+...++... ....++++| ++|+++.. .+.+|+...... . .... +...
T Consensus 145 ~~~~~~~~~~~----~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~--~-----------~~~~~l~~~-------- 199 (361)
T 3scy_A 145 SGPDKERQTMP----HLHCVRITPDGKYLLADDLGTDQIHKFNINPNAN--A-----------DNKEKFLTK-------- 199 (361)
T ss_dssp CCSCTTTCSSC----CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCC--T-----------TTCCCCEEE--------
T ss_pred CCCCccccCCC----cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCC--c-----------ccccceeec--------
Confidence 000001000 112367777 66665542 345554210000 0 0000 0000
Q ss_pred hhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE--EEEe---ccCCCCeEEEEECC
Q 001935 305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI--ISQF---KAHTSPISALCFDP 379 (994)
Q Consensus 305 la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~--i~~~---~aHtspIsaLaFSP 379 (994)
|....+ .+........+.++++++... +....++.|.+||+.+++. +..+ ..|......|+|+|
T Consensus 200 ---~~~~~~-----~~~~~~~~~~~~~spdg~~l~---v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp 268 (361)
T 3scy_A 200 ---GTPEAF-----KVAPGSGPRHLIFNSDGKFAY---LINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP 268 (361)
T ss_dssp ---EEEEEE-----ECCTTCCEEEEEECTTSSEEE---EEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT
T ss_pred ---ccccce-----ecCCCCCCeEEEEcCCCCEEE---EEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC
Confidence 000000 000000001122334443221 2334688999999987753 2333 34445678999999
Q ss_pred CCCEEEEEEcC-CCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEE
Q 001935 380 SGTLLVTASVY-GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHV 457 (994)
Q Consensus 380 dGtlLATAS~d-Gt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS-~dGTVhI 457 (994)
||++|+.+... +..|+||++.+. .| ....+..+.. ...+.+++|+|||++|++++ .+++|.|
T Consensus 269 dg~~l~v~~~~~~~~i~v~~~~~~-----~g--------~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v 332 (361)
T 3scy_A 269 DGKYLYASNRLKADGVAIFKVDET-----NG--------TLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQI 332 (361)
T ss_dssp TSSEEEEEECSSSCEEEEEEECTT-----TC--------CEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEE
T ss_pred CCCEEEEECCCCCCEEEEEEEcCC-----CC--------cEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEE
Confidence 99999887775 467999998532 12 1123333432 23578999999999999988 6799999
Q ss_pred EecCCCCCCc
Q 001935 458 FVLSPFGGDS 467 (994)
Q Consensus 458 w~I~~~gg~~ 467 (994)
|.++...+..
T Consensus 333 ~~~d~~~g~~ 342 (361)
T 3scy_A 333 FERDQATGLL 342 (361)
T ss_dssp EEECTTTCCE
T ss_pred EEEECCCCcE
Confidence 9998765544
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.49 E-value=3.5e-13 Score=159.20 Aligned_cols=333 Identities=11% Similarity=0.054 Sum_probs=174.0
Q ss_pred CCCeEEEEEecCcEEEEEccCCCcceEeeeeccC---CEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCC
Q 001935 73 VFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDG---PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQN 149 (994)
Q Consensus 73 ~~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdG---pV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~ 149 (994)
+++++|+.+.++.+++||+. +++...++..|.. .|..++++|++ ..||....+..
T Consensus 26 pdg~~~~~~~dg~i~~~d~~-~g~~~~~~~~~~~~~~~v~~~~~SpDg-------------~~l~~~~~~~~-------- 83 (723)
T 1xfd_A 26 SDTEFIYREQKGTVRLWNVE-TNTSTVLIEGKKIESLRAIRYEISPDR-------------EYALFSYNVEP-------- 83 (723)
T ss_dssp SSSCBCCCCSSSCEEEBCGG-GCCCEEEECTTTTTTTTCSEEEECTTS-------------SEEEEEESCCC--------
T ss_pred CCCcEEEEeCCCCEEEEECC-CCcEEEEeccccccccccceEEECCCC-------------CEEEEEecCcc--------
Confidence 45566666555569999995 5777788877665 49999999886 35666443210
Q ss_pred CCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC----CcEEEEEecC--CeEEEEeCCeEEEEECCCCce
Q 001935 150 RSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR----SSVCMVRCSP--RIVAVGLATQIYCFDALTLEN 223 (994)
Q Consensus 150 ~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~----S~V~sV~~S~--~iLAVgl~~~I~IwDa~Tle~ 223 (994)
+ + .......|.+||+.+++. ..+... ..|..++++| +.||.+.+.+|++||+.+.+.
T Consensus 84 ------~----~------~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~ 146 (723)
T 1xfd_A 84 ------I----Y------QHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQA 146 (723)
T ss_dssp ------C----S------SSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCC
T ss_pred ------c----e------eecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCce
Confidence 0 0 011247899999999986 344322 2378888988 588888889999999998876
Q ss_pred eEEEeecCCccccCCCccc------cccCccceEEcc--cEEEEccC---CeeeccCCccCCCcCCCCCCCCCcCCCCCc
Q 001935 224 KFSVLTYPVPQLAGQGAVG------INVGYGPMAVGP--RWLAYASN---TLLLSNSGRLSPQNLTPSGVSPSTSPGGSS 292 (994)
Q Consensus 224 l~tL~t~p~p~~~~~g~~~------vnv~~gplAlgp--RwLAyas~---~~~iwd~G~~s~qsltp~~~S~stSp~~gs 292 (994)
........... ...|.++ +......++++| ++|||... .+.+|........ ..+......+++.+..
T Consensus 147 ~~~~~~~~~~~-~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~~ 224 (723)
T 1xfd_A 147 IRVVSTGKEGV-IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS-IYPTVKPYHYPKAGSE 224 (723)
T ss_dssp EEEECCCBTTT-EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS-SSCCCEEEECCBTTSC
T ss_pred EEEecCCCCCc-eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCc-CCCcceeccCCCCCCC
Confidence 54433221100 0000000 000113478887 78988753 2223321000000 0011111122222110
Q ss_pred e-EEEeehhhhhhhhccc-ceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc-CC
Q 001935 293 L-VARYAMEHSKQFAAGL-SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA-HT 369 (994)
Q Consensus 293 L-Va~~A~dssk~la~Gi-~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a-Ht 369 (994)
. .... ..+++..+. .+.+.................++++++...........+..|.+||+.+++....+.. |.
T Consensus 225 ~~~~~l---~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~ 301 (723)
T 1xfd_A 225 NPSISL---HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE 301 (723)
T ss_dssp CCEEEE---EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS
T ss_pred CCeeEE---EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccC
Confidence 0 0000 012222221 1122110000000001112334455543321112234567899999999987766654 34
Q ss_pred CCeE----EEEECCCCCEEEEE-EcCCC----e--EEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEE-E
Q 001935 370 SPIS----ALCFDPSGTLLVTA-SVYGN----N--INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQD-I 437 (994)
Q Consensus 370 spIs----aLaFSPdGtlLATA-S~dGt----~--IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~s-I 437 (994)
..+. .++|+|||+.|+.+ +.++. . |.+|++... +. ..++..|..|. ..+.. +
T Consensus 302 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~------~~--------~~~~~~l~~~~--~~~~~~~ 365 (723)
T 1xfd_A 302 AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN------SS--------NDNIQSITSGD--WDVTKIL 365 (723)
T ss_dssp SCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC------SS--------SCCCCBSCCSS--SCEEEEE
T ss_pred CEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCC------CC--------ccceeEeecCC--eEEEeee
Confidence 4443 78999999988865 43333 3 455552111 10 00022232221 23444 7
Q ss_pred EEccCCCEEEEEeCC---CeEEEEecCCCCC
Q 001935 438 CFSHYSQWIAIVSSK---GTCHVFVLSPFGG 465 (994)
Q Consensus 438 aFSpDg~~LAsgS~d---GTVhIw~I~~~gg 465 (994)
+|||||++|+..+.+ ++++||.++..++
T Consensus 366 ~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 366 AYDEKGNKIYFLSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp EEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred EEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence 999999999877666 8999999986553
No 139
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.49 E-value=1.1e-11 Score=132.99 Aligned_cols=105 Identities=11% Similarity=0.200 Sum_probs=71.0
Q ss_pred CCCeEEEEECCC--CcE--EEEeccCC------CCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccC
Q 001935 347 NAGIVVVKDFVT--RAI--ISQFKAHT------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWN 416 (994)
Q Consensus 347 ~dG~V~VwDl~s--~~~--i~~~~aHt------spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~ 416 (994)
.++.|.+||+.. ++. +..+..+. ..+..++|+|||++|+.+...+..|.||++.+. |
T Consensus 207 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~------g------- 273 (347)
T 3hfq_A 207 LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD------G------- 273 (347)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG------G-------
T ss_pred CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC------C-------
Confidence 456788888764 432 23333332 348899999999988655554566999998531 1
Q ss_pred CcceEEEEEecccccccEEEEEEccCCCEEEEEeCC-CeEEEEecCCCCCCc
Q 001935 417 SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGGDS 467 (994)
Q Consensus 417 ~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~d-GTVhIw~I~~~gg~~ 467 (994)
....+..+..+ ...+.+++|+|||++|++++.+ ++|.||+++...|..
T Consensus 274 -~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 274 -HLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp -CEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred -cEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 11344444321 2347899999999999988765 899999998765554
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.48 E-value=1.1e-12 Score=133.84 Aligned_cols=246 Identities=12% Similarity=0.026 Sum_probs=150.3
Q ss_pred CcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCC
Q 001935 84 NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDS 163 (994)
Q Consensus 84 ~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~ 163 (994)
..+.+||+. .++.. .+..|.+.|..+++.|++ .+|++..
T Consensus 22 ~~i~~~d~~-~~~~~-~~~~~~~~v~~~~~spdg-------------~~l~~~~-------------------------- 60 (297)
T 2ojh_A 22 SSIEIFNIR-TRKMR-VVWQTPELFEAPNWSPDG-------------KYLLLNS-------------------------- 60 (297)
T ss_dssp EEEEEEETT-TTEEE-EEEEESSCCEEEEECTTS-------------SEEEEEE--------------------------
T ss_pred eeEEEEeCC-CCcee-eeccCCcceEeeEECCCC-------------CEEEEEc--------------------------
Confidence 448999985 45554 445578899999999876 3556421
Q ss_pred CCCCCCCCCCEEEEEECCC-CeEEEEEeCC--CcEEEEEecC--CeEEEEe-----CCeEEEEECCCCceeEEEeecCCc
Q 001935 164 QSGNCVNSPTAVRFYSFQS-HCYEHVLRFR--SSVCMVRCSP--RIVAVGL-----ATQIYCFDALTLENKFSVLTYPVP 233 (994)
Q Consensus 164 ~~~~~~~sp~tVrLWDlkt-ge~V~tL~f~--S~V~sV~~S~--~iLAVgl-----~~~I~IwDa~Tle~l~tL~t~p~p 233 (994)
.+.|.+||+.+ ++....+..+ ..|.++++++ +.|+++. ..+|+.||+.+.+. ..+.....
T Consensus 61 --------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~- 130 (297)
T 2ojh_A 61 --------EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNLP- 130 (297)
T ss_dssp --------TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSSS-
T ss_pred --------CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecCCC-
Confidence 25799999999 8877665544 5678888887 5777766 23577777766542 22221111
Q ss_pred cccCCCccccccCccceEEcc--cEEEEccC---CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcc
Q 001935 234 QLAGQGAVGINVGYGPMAVGP--RWLAYASN---TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAG 308 (994)
Q Consensus 234 ~~~~~g~~~vnv~~gplAlgp--RwLAyas~---~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~G 308 (994)
...+++++ ++|+|... ...+|..... ++..
T Consensus 131 -------------~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~-----------------~~~~--------------- 165 (297)
T 2ojh_A 131 -------------SYWHGWSPDGKSFTYCGIRDQVFDIYSMDID-----------------SGVE--------------- 165 (297)
T ss_dssp -------------EEEEEECTTSSEEEEEEEETTEEEEEEEETT-----------------TCCE---------------
T ss_pred -------------ccceEECCCCCEEEEEECCCCceEEEEEECC-----------------CCcc---------------
Confidence 12356666 67776542 2345541000 0000
Q ss_pred cceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECC-CCcEEEEeccCCCCeEEEEECCCCCEEEEE
Q 001935 309 LSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFV-TRAIISQFKAHTSPISALCFDPSGTLLVTA 387 (994)
Q Consensus 309 i~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~-s~~~i~~~~aHtspIsaLaFSPdGtlLATA 387 (994)
+.+... ......+.++++++.. ...+..++.++||++. .+..+..+..|...+..++|+|+|++|+++
T Consensus 166 --~~~~~~------~~~~~~~~~s~dg~~l---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 234 (297)
T 2ojh_A 166 --TRLTHG------EGRNDGPDYSPDGRWI---YFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFV 234 (297)
T ss_dssp --EECCCS------SSCEEEEEECTTSSEE---EEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred --eEcccC------CCccccceECCCCCEE---EEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEE
Confidence 000000 0000011122222211 1123457888999886 556678888899999999999999999998
Q ss_pred EcCC----------CeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 001935 388 SVYG----------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453 (994)
Q Consensus 388 S~dG----------t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dG 453 (994)
+.++ ..|.+|++.. + ....+..+.. +...|.+++|+||+++|++++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~d~~~-------~--------~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 235 SYDADVFDHPRDLDVRVQLMDMDG-------G--------NVETLFDLFG--GQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEETTCCSCCSSEEEEEEEEETTS-------C--------SCEEEEEEEE--STTTSCSCCBCTTSSEEEEEEECC
T ss_pred EcCCCCCcccccCceEEEEEecCC-------C--------CceeeeccCC--CCcccccceECCCCCEEEEEEecc
Confidence 8753 4589999853 2 1134554432 234688899999999999988764
No 141
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.46 E-value=1.3e-11 Score=130.67 Aligned_cols=88 Identities=10% Similarity=0.052 Sum_probs=65.4
Q ss_pred EEECCCCcE-EEEeccCCCCeEEEEECC-CCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc
Q 001935 353 VKDFVTRAI-ISQFKAHTSPISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT 430 (994)
Q Consensus 353 VwDl~s~~~-i~~~~aHtspIsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t 430 (994)
.+|..+++. +..+..+...+..++|+| ||++|+++ ++ .|.+||+.. + +.+..+..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~-~v~~~d~~~-------~----------~~~~~~~~~-- 294 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LN-RLAKYDLKQ-------R----------KLIKAANLD-- 294 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ES-EEEEEETTT-------T----------EEEEEEECS--
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cC-eEEEEECcc-------C----------eEEEEEcCC--
Confidence 366666552 233345667889999999 99999988 34 599999853 2 344444433
Q ss_pred cccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 431 SATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 431 ~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
..+.+++|+||+++|++++.+++|+||++...
T Consensus 295 -~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 295 -HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp -SCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred -CCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 24678999999999999999999999998764
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.46 E-value=2.8e-12 Score=151.57 Aligned_cols=262 Identities=13% Similarity=0.029 Sum_probs=150.8
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCC-----CceeEEEeecCCccc-----cCCCc
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALT-----LENKFSVLTYPVPQL-----AGQGA 240 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVgl~~~I~IwDa~T-----le~l~tL~t~p~p~~-----~~~g~ 240 (994)
++|++||+.+++..........+.+++++| +.||++.++.|++||+.+ .+............. ..+..
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~ 180 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREF 180 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCT
T ss_pred CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhc
Confidence 589999999998877666667788888987 588888889999999988 665432211100000 00000
Q ss_pred cccccCccceEEcc--cEEEEcc-----------------------------------CCeeeccC--CccCCCc----C
Q 001935 241 VGINVGYGPMAVGP--RWLAYAS-----------------------------------NTLLLSNS--GRLSPQN----L 277 (994)
Q Consensus 241 ~~vnv~~gplAlgp--RwLAyas-----------------------------------~~~~iwd~--G~~s~qs----l 277 (994)
. ....++++| ++|||.. ..+.+|+. |...... .
T Consensus 181 ~----~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 256 (706)
T 2z3z_A 181 G----IEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK 256 (706)
T ss_dssp T----CCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred C----CCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence 0 014577887 8888875 13456663 2210000 0
Q ss_pred CCCCCCCCcCCCCCceEEEeehh-------hhhhhhcc-cceeeccccccccCCCCCCCccCCC--ccccccccccccCC
Q 001935 278 TPSGVSPSTSPGGSSLVARYAME-------HSKQFAAG-LSKTLSKYCQELLPDGSSSPVSPNS--VWKVGRHAGADMDN 347 (994)
Q Consensus 278 tp~~~S~stSp~~gsLVa~~A~d-------ssk~la~G-i~ktlS~y~~~l~p~~s~s~~s~s~--~~k~g~~~~as~s~ 347 (994)
......+.+||++..++...... ..+++..| ..+.+.......+. .......+++ +++. +..+..
T Consensus 257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~-~~~~~~~~sp~~dg~~----l~~~~~ 331 (706)
T 2z3z_A 257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV-EPLHPLTFLPGSNNQF----IWQSRR 331 (706)
T ss_dssp TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC-CCCSCCEECTTCSSEE----EEEECT
T ss_pred ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE-CccCCceeecCCCCEE----EEEEcc
Confidence 11234567788877665421110 01222333 22222110000000 0011233444 4442 234567
Q ss_pred CCeEEEEECC-CCcEEEEeccCCCCeEE-EEECCCCCEEEEEEcCCC--eEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 001935 348 AGIVVVKDFV-TRAIISQFKAHTSPISA-LCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (994)
Q Consensus 348 dG~V~VwDl~-s~~~i~~~~aHtspIsa-LaFSPdGtlLATAS~dGt--~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~ 423 (994)
+|.++||++. +++.+..+..|..++.. ++|+|||+.|+.++.++. .++||.+... ++ .+.
T Consensus 332 ~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~-----~~-----------~~~ 395 (706)
T 2z3z_A 332 DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK-----GG-----------KTK 395 (706)
T ss_dssp TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT-----CC-----------CCE
T ss_pred CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC-----CC-----------Cce
Confidence 8889999876 66778889999888987 899999998877766543 2444444221 02 122
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCC----CeEEEEecCC
Q 001935 424 KLHRGITSATIQDICFSHYSQWIAIVSSK----GTCHVFVLSP 462 (994)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~LAsgS~d----GTVhIw~I~~ 462 (994)
.+. +...+.+++|||||++|+.+..+ +++++|++..
T Consensus 396 ~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 396 DLT---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp ESC---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred ecc---CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 222 23458899999999999887554 4699999864
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.39 E-value=5.2e-12 Score=149.91 Aligned_cols=243 Identities=10% Similarity=0.019 Sum_probs=142.9
Q ss_pred CEEEEEECCCCeEEEEEeCCC-------------------------cEEEEEecC--CeEEEEeCCeEEEEECCCCc--e
Q 001935 173 TAVRFYSFQSHCYEHVLRFRS-------------------------SVCMVRCSP--RIVAVGLATQIYCFDALTLE--N 223 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S-------------------------~V~sV~~S~--~iLAVgl~~~I~IwDa~Tle--~ 223 (994)
.+|++||+.+++....+.++. .|.++++++ +.|+++..++|++||+.+.+ .
T Consensus 64 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~ 143 (741)
T 2ecf_A 64 LDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAA 143 (741)
T ss_dssp EEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCSTTS
T ss_pred cEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCcce
Confidence 489999999999887776532 267888988 58888888999999998872 2
Q ss_pred eEEEeecCCccccCCCccccccCccceEEcc--cEEEEccC-CeeeccCCccCCCcCCCC--------------------
Q 001935 224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN-TLLLSNSGRLSPQNLTPS-------------------- 280 (994)
Q Consensus 224 l~tL~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~-~~~iwd~G~~s~qsltp~-------------------- 280 (994)
...+..+.. ....++++| ++|||..+ .+.+|+...-....++..
T Consensus 144 ~~~l~~~~~-------------~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~ 210 (741)
T 2ecf_A 144 VRQLTHGEG-------------FATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDR 210 (741)
T ss_dssp CCBCCCSSS-------------CEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCC
T ss_pred EEEcccCCc-------------ccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccceeccccceeeeecccc
Confidence 223332211 123477887 89998875 466776411111111110
Q ss_pred CCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCC--CCeEEEEECCC
Q 001935 281 GVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDN--AGIVVVKDFVT 358 (994)
Q Consensus 281 ~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~--dG~V~VwDl~s 358 (994)
...+.+||++..++.-......... +. ....+|.... .....++ ..+.. .-.|.+||+.+
T Consensus 211 ~~~~~~SpDg~~l~~~~~d~~~~~~-------~~--~~~~~p~~~~--------~~~~~~~-~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 211 HTGYWWAPDDSAIAYARIDESPVPV-------QK--RYEVYADRTD--------VIEQRYP-AAGDANVQVKLGVISPAE 272 (741)
T ss_dssp CCSEEECTTSSCEEEEEEECTTSCE-------EE--EEEECSSCEE--------EEEEECC-BTTSCCCEEEEEEECSST
T ss_pred ccceEECCCCCEEEEEEEcCCCCce-------Ee--cCCCCCCccc--------ceEeecC-CCCCCCCeeEEEEEECCC
Confidence 2445677776655431110000000 00 0000010000 0000000 01111 22688889988
Q ss_pred -CcEEEEec--cCCCCeEEEEECCCCCEEEEEEc----CCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc
Q 001935 359 -RAIISQFK--AHTSPISALCFDPSGTLLVTASV----YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS 431 (994)
Q Consensus 359 -~~~i~~~~--aHtspIsaLaFSPdGtlLATAS~----dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~ 431 (994)
++...... .|...|..++| |||++|+.++. ....|++||+.. | .....+ .+...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~-------g----------~~~~~~-~~~~~ 333 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS-------N----------QQRVLA-HETSP 333 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT-------C----------CEEEEE-EEECS
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC-------C----------ceEEEE-EcCCC
Confidence 77654443 48889999999 99999998764 134588899753 2 122222 22222
Q ss_pred c---cEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 432 A---TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 432 a---~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
. .+.+++|||||++|++++.+|+++||.++..++
T Consensus 334 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~ 370 (741)
T 2ecf_A 334 TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK 370 (741)
T ss_dssp SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC
T ss_pred CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC
Confidence 2 346899999999999999999999999886544
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.37 E-value=3.9e-10 Score=119.78 Aligned_cols=222 Identities=7% Similarity=-0.027 Sum_probs=144.3
Q ss_pred CCe-EEEEEec-CcEEEEEccCCCcceEeeeeccCC---------EEEEEEecCCCCCCCCCCccccCcEEEEEecCCCC
Q 001935 74 FKQ-VLLLGYQ-NGFQVLDVEDASNFNELVSKRDGP---------VSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTN 142 (994)
Q Consensus 74 ~~~-vL~lGy~-~G~qVWDv~~~g~v~ells~hdGp---------V~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~ 142 (994)
+++ +++++.. +.+.+||.. ++++...+..+.+. +..+.+.|++ ..|++...+
T Consensus 99 dg~~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-------------~~l~~~~~~--- 161 (353)
T 3vgz_A 99 TTQTLWFGNTVNSAVTAIDAK-TGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-------------NTVYISGIG--- 161 (353)
T ss_dssp TTTEEEEEETTTTEEEEEETT-TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-------------TEEEEEEES---
T ss_pred CCCEEEEEecCCCEEEEEeCC-CCeeEEEEecCCCccccccCCCCCceEEECCCC-------------CEEEEEecC---
Confidence 444 5555554 458999985 56666666554432 6778888765 244442211
Q ss_pred CCCCCCCCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeC-CCcEEEEEecC--CeEEEEe-CCeEEEEEC
Q 001935 143 TLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRF-RSSVCMVRCSP--RIVAVGL-ATQIYCFDA 218 (994)
Q Consensus 143 ~~~~~q~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f-~S~V~sV~~S~--~iLAVgl-~~~I~IwDa 218 (994)
.+++|.+||+++++.+..+.. ...+..+++++ +.|+++. ++.|++||+
T Consensus 162 ----------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~ 213 (353)
T 3vgz_A 162 ----------------------------KESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDT 213 (353)
T ss_dssp ----------------------------SSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEET
T ss_pred ----------------------------CCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEEC
Confidence 136899999999999999984 44577888876 5566654 568999999
Q ss_pred CCCceeEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEee
Q 001935 219 LTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYA 298 (994)
Q Consensus 219 ~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A 298 (994)
.+.+.+..+...... .. ..+ .-+++. |++..+.
T Consensus 214 ~~~~~~~~~~~~~~~---------~~--~~~-----~~~~~s---------------------------~dg~~l~---- 246 (353)
T 3vgz_A 214 ADNKILSRKKLLDDG---------KE--HFF-----INISLD---------------------------TARQRAF---- 246 (353)
T ss_dssp TTTEEEEEEECCCSS---------SC--CCE-----EEEEEE---------------------------TTTTEEE----
T ss_pred CCCeEEEEEEcCCCC---------CC--ccc-----ceEEEC---------------------------CCCCEEE----
Confidence 998877665532110 00 000 011222 1211110
Q ss_pred hhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEEC
Q 001935 299 MEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFD 378 (994)
Q Consensus 299 ~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFS 378 (994)
.....++.|.+||+.+++.+..+..+. + ..++|+
T Consensus 247 --------------------------------------------~~~~~~~~v~~~d~~~~~~~~~~~~~~-~-~~~~~s 280 (353)
T 3vgz_A 247 --------------------------------------------ITDSKAAEVLVVDTRNGNILAKVAAPE-S-LAVLFN 280 (353)
T ss_dssp --------------------------------------------EEESSSSEEEEEETTTCCEEEEEECSS-C-CCEEEE
T ss_pred --------------------------------------------EEeCCCCEEEEEECCCCcEEEEEEcCC-C-ceEEEC
Confidence 012346889999999999888887654 3 569999
Q ss_pred CCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 001935 379 PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453 (994)
Q Consensus 379 PdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dG 453 (994)
|+|++|+.++..+..|.+||+.. + +.+..+..+ ..+.+++|+|||++|+++...+
T Consensus 281 ~dg~~l~v~~~~~~~v~~~d~~~-------~----------~~~~~~~~~---~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 281 PARNEAYVTHRQAGKVSVIDAKS-------Y----------KVVKTFDTP---THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp TTTTEEEEEETTTTEEEEEETTT-------T----------EEEEEEECC---SEEEEEEECTTSCEEEEEEECC
T ss_pred CCCCEEEEEECCCCeEEEEECCC-------C----------eEEEEEecC---CCCCeEEEcCCCCEEEEEEccc
Confidence 99997777776566799999853 2 344444332 3579999999999888887764
No 145
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.37 E-value=3.5e-11 Score=150.43 Aligned_cols=258 Identities=7% Similarity=-0.044 Sum_probs=162.7
Q ss_pred eEEEEEecCc-EEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCcc
Q 001935 76 QVLLLGYQNG-FQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLG 154 (994)
Q Consensus 76 ~vL~lGy~~G-~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~ 154 (994)
+++.++..+| ++||.++..+.....+..+. .+..+.++|++ ..||...
T Consensus 215 ~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG-------------~~la~~~----------------- 263 (1045)
T 1k32_A 215 RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDG-------------RRILFSK----------------- 263 (1045)
T ss_dssp EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESS-------------SCEEEEE-----------------
T ss_pred EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCC-------------CEEEEEe-----------------
Confidence 5666666655 89999865454445555554 34556777765 2345421
Q ss_pred ccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC------------CcEEEEEec-C--CeEEEEeCCeEEEEECC
Q 001935 155 GVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR------------SSVCMVRCS-P--RIVAVGLATQIYCFDAL 219 (994)
Q Consensus 155 ~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~------------S~V~sV~~S-~--~iLAVgl~~~I~IwDa~ 219 (994)
+..|.+||+..++. ..+..+ ..|.+++++ | +.|+++..+.|++||+.
T Consensus 264 -----------------~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~ 325 (1045)
T 1k32_A 264 -----------------GGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVS 325 (1045)
T ss_dssp -----------------TTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTT
T ss_pred -----------------CCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCC
Confidence 25799999955544 344332 257888998 7 57888778899999988
Q ss_pred CCceeEEEeecCCccccCCCccccccCccceEE-cccEEEEccCCeeec---cCCccCCCcCCCCCCCCCcCCCCCceEE
Q 001935 220 TLENKFSVLTYPVPQLAGQGAVGINVGYGPMAV-GPRWLAYASNTLLLS---NSGRLSPQNLTPSGVSPSTSPGGSSLVA 295 (994)
Q Consensus 220 Tle~l~tL~t~p~p~~~~~g~~~vnv~~gplAl-gpRwLAyas~~~~iw---d~G~~s~qsltp~~~S~stSp~~gsLVa 295 (994)
+.+... +..++.. . ...+++ ..++|+|.+....+| +...-....++
T Consensus 326 ~~~~~~-~~~~~~~--------~----~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~----------------- 375 (1045)
T 1k32_A 326 GTYVLK-VPEPLRI--------R----YVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE----------------- 375 (1045)
T ss_dssp SSBEEE-CSCCSCE--------E----EEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC-----------------
T ss_pred CCceEE-ccCCCcc--------e----EEeeeEcCCCeEEEEECCCceEEEEECCCCCceEec-----------------
Confidence 766432 2222210 0 011122 345677766543344 31100000000
Q ss_pred EeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEE
Q 001935 296 RYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISAL 375 (994)
Q Consensus 296 ~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaL 375 (994)
.. ......+.++++++. ++.+..++.|.+||+.+++....+..|..+|.++
T Consensus 376 -------------------~~------~~~~~~~~~SpDG~~----la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~ 426 (1045)
T 1k32_A 376 -------------------EN------LGNVFAMGVDRNGKF----AVVANDRFEIMTVDLETGKPTVIERSREAMITDF 426 (1045)
T ss_dssp -------------------CC------CCSEEEEEECTTSSE----EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred -------------------CC------ccceeeeEECCCCCE----EEEECCCCeEEEEECCCCceEEeccCCCCCccce
Confidence 00 000011223333332 2345678899999999999888888999999999
Q ss_pred EECCCCCEEEEEEcCC---------CeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 001935 376 CFDPSGTLLVTASVYG---------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (994)
Q Consensus 376 aFSPdGtlLATAS~dG---------t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (994)
+|||||++||+++.++ ..|+|||+.. | .+..+.. +...+.+++|+|||++|
T Consensus 427 ~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-------g-----------~~~~l~~--~~~~~~~~~~spdG~~l 486 (1045)
T 1k32_A 427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-------R-----------KIFAATT--ENSHDYAPAFDADSKNL 486 (1045)
T ss_dssp EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-------T-----------EEEECSC--SSSBEEEEEECTTSCEE
T ss_pred EECCCCCeEEEEecCccccccCCCCCeEEEEECCC-------C-----------cEEEeeC--CCcccCCceEcCCCCEE
Confidence 9999999999988754 4799999853 2 2444432 23468889999999999
Q ss_pred EEEeCCCeEEEEecC
Q 001935 447 AIVSSKGTCHVFVLS 461 (994)
Q Consensus 447 AsgS~dGTVhIw~I~ 461 (994)
+.++.++...+|+..
T Consensus 487 ~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 487 YYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EEEESCCCCCEECSS
T ss_pred EEEecccCCcCcchh
Confidence 999999999999864
No 146
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.34 E-value=3.3e-11 Score=137.11 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=79.4
Q ss_pred cccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 343 ADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 343 as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
++++.||+|+|||+.++..+....+|...|.+++|+|+|++||+++.+|+ |+|||+. + ...
T Consensus 166 as~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~--------~----------~~~ 226 (434)
T 2oit_A 166 AVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPT--------L----------QEK 226 (434)
T ss_dssp EEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTT--------C----------CEE
T ss_pred EEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccC--------C----------ccc
Confidence 35678999999999998877777889999999999999999999999776 9999985 1 122
Q ss_pred EEEec--c---cccccEEEEEEccCCCEEEEEe-CCCe------EEEEecCCCCC
Q 001935 423 YKLHR--G---ITSATIQDICFSHYSQWIAIVS-SKGT------CHVFVLSPFGG 465 (994)
Q Consensus 423 ~~L~R--G---~t~a~I~sIaFSpDg~~LAsgS-~dGT------VhIw~I~~~gg 465 (994)
.++.. . .+...|.+++|++++.++++.+ .+|. +++|++...+.
T Consensus 227 ~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~ 281 (434)
T 2oit_A 227 KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEE 281 (434)
T ss_dssp EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTT
T ss_pred ccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCC
Confidence 22221 1 1123799999999999986643 4433 89999976543
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.33 E-value=7e-10 Score=117.52 Aligned_cols=182 Identities=10% Similarity=0.097 Sum_probs=117.9
Q ss_pred CEEEEEECCCCeEEEEEeCCC-cEEEEEecC--CeEEEEe--CCeEEEEECCCCce-eEEEeecCCccccCCCccccccC
Q 001935 173 TAVRFYSFQSHCYEHVLRFRS-SVCMVRCSP--RIVAVGL--ATQIYCFDALTLEN-KFSVLTYPVPQLAGQGAVGINVG 246 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S-~V~sV~~S~--~iLAVgl--~~~I~IwDa~Tle~-l~tL~t~p~p~~~~~g~~~vnv~ 246 (994)
++|++||+.+++.+..+.+.. .+ .+++++ +.|+++. +++|++||+.+.+. ...+.....|
T Consensus 20 ~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------------- 85 (331)
T 3u4y_A 20 RRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS------------- 85 (331)
T ss_dssp TEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC-------------
T ss_pred CeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCC-------------
Confidence 689999999999999888754 55 899987 4455544 45899999998876 4444332221
Q ss_pred ccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCC
Q 001935 247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (994)
Q Consensus 247 ~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~ 326 (994)
...++++ |++..+++ .
T Consensus 86 ~~~~~~s----------------------------------~dg~~l~~--~---------------------------- 101 (331)
T 3u4y_A 86 MADVDIT----------------------------------PDDQFAVT--V---------------------------- 101 (331)
T ss_dssp CCCEEEC----------------------------------TTSSEEEE--C----------------------------
T ss_pred ccceEEC----------------------------------CCCCEEEE--e----------------------------
Confidence 0012222 12111110 0
Q ss_pred CCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCe-EEEEeCCCCccc
Q 001935 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNN-INIFRIMPSCMR 405 (994)
Q Consensus 327 s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~-IrVwdi~p~~~~ 405 (994)
...+..+.|.+||+.+++.+..+..+.. ...++|+|||++|++++..+.. |.+|++.+.
T Consensus 102 ----------------~~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~--- 161 (331)
T 3u4y_A 102 ----------------TGLNHPFNMQSYSFLKNKFISTIPIPYD-AVGIAISPNGNGLILIDRSSANTVRRFKIDAD--- 161 (331)
T ss_dssp ----------------CCSSSSCEEEEEETTTTEEEEEEECCTT-EEEEEECTTSSCEEEEEETTTTEEEEEEECTT---
T ss_pred ----------------cCCCCcccEEEEECCCCCeEEEEECCCC-ccceEECCCCCEEEEEecCCCceEEEEEECCC---
Confidence 0001233899999999998888877654 5899999999977766655455 999998642
Q ss_pred CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEecCCCC
Q 001935 406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG 464 (994)
Q Consensus 406 ~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS-~dGTVhIw~I~~~g 464 (994)
|.. .......+. ....+..++|+|||++|++++ .+++|++|++....
T Consensus 162 ---g~~------~~~~~~~~~---~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 209 (331)
T 3u4y_A 162 ---GVL------FDTGQEFIS---GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE 209 (331)
T ss_dssp ---CCE------EEEEEEEEC---SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred ---CcE------eecCCcccc---CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 210 000011221 123578999999999776655 68999999987543
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.33 E-value=7.6e-10 Score=118.80 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=69.4
Q ss_pred CCCCeEEEEECC-CCcEE--EEeccC-CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceE
Q 001935 346 DNAGIVVVKDFV-TRAII--SQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (994)
Q Consensus 346 s~dG~V~VwDl~-s~~~i--~~~~aH-tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~ 421 (994)
..++.|.+||+. +++.. ..+..+ ......++|+|||++|+.++..+..|+||++... .| ....
T Consensus 159 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g--------~~~~ 225 (347)
T 3hfq_A 159 LGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-----TG--------AFTQ 225 (347)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT-----TT--------EEEE
T ss_pred CCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC-----CC--------ceEE
Confidence 346789999998 45432 223333 2356789999999988887776778999998531 12 1122
Q ss_pred EEEEecccc----cccEEEEEEccCCCEEE-EEeCCCeEEEEecCC
Q 001935 422 LYKLHRGIT----SATIQDICFSHYSQWIA-IVSSKGTCHVFVLSP 462 (994)
Q Consensus 422 l~~L~RG~t----~a~I~sIaFSpDg~~LA-sgS~dGTVhIw~I~~ 462 (994)
+..+..... ...+..++|||||++|+ +...+++|+||++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 333321111 13588999999999885 455689999999875
No 149
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.31 E-value=2.5e-10 Score=125.02 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=54.1
Q ss_pred CeEEEE-ECCCCCEEEEEEcCCC-----eEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc---
Q 001935 371 PISALC-FDPSGTLLVTASVYGN-----NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH--- 441 (994)
Q Consensus 371 pIsaLa-FSPdGtlLATAS~dGt-----~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSp--- 441 (994)
.+..++ |+|||++|++++..+. .|+||++.+. |. ...+..+... ....+..++|+|
T Consensus 255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~------g~--------~~~~~~~~~~-~~~~~~~~a~sp~~~ 319 (365)
T 1jof_A 255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC------GS--------IEKQLFLSPT-PTSGGHSNAVSPCPW 319 (365)
T ss_dssp EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT------SC--------EEEEEEEEEC-SSCCTTCCCEEECTT
T ss_pred ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC------CC--------EEEeeeeeec-CCCCcccceecCCCc
Confidence 478999 9999999988776443 7999998531 31 1111111111 122356799999
Q ss_pred CCCEEEEEeCC-CeEEEEecCCC
Q 001935 442 YSQWIAIVSSK-GTCHVFVLSPF 463 (994)
Q Consensus 442 Dg~~LAsgS~d-GTVhIw~I~~~ 463 (994)
||++|++++.+ ++|.||+++..
T Consensus 320 dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 320 SDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCEEEEEEcCCCeEEEEEEchh
Confidence 89999999875 89999998763
No 150
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.30 E-value=2.1e-10 Score=143.40 Aligned_cols=95 Identities=22% Similarity=0.262 Sum_probs=74.1
Q ss_pred CCCeEE-EEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 347 NAGIVV-VKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 347 ~dG~V~-VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
.++.+. +||+.+++.. .+..|...+..++|||||++||+++.++ .|++||+.. | .. ..+
T Consensus 356 ~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~-~v~~~d~~t-------g----------~~-~~~ 415 (1045)
T 1k32_A 356 REGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRF-EIMTVDLET-------G----------KP-TVI 415 (1045)
T ss_dssp TTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTS-EEEEEETTT-------C----------CE-EEE
T ss_pred CCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCC-eEEEEECCC-------C----------ce-EEe
Confidence 366788 8899887654 4458889999999999999999999865 599999853 3 12 222
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCC----------eEEEEecCC
Q 001935 426 HRGITSATIQDICFSHYSQWIAIVSSKG----------TCHVFVLSP 462 (994)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~LAsgS~dG----------TVhIw~I~~ 462 (994)
..+ +...|.+++|||||++||+++.++ +|+||++..
T Consensus 416 ~~~-~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 416 ERS-REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp EEC-SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred ccC-CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 233 234688999999999999988765 899999875
No 151
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.29 E-value=7.1e-10 Score=116.70 Aligned_cols=222 Identities=9% Similarity=0.108 Sum_probs=126.8
Q ss_pred CEEEEEECC-CC--eEEEEEeCCCcEEEEEecC--CeEEEEeC--CeEEEEECC--CCce--eEEEeecCCccccCCCcc
Q 001935 173 TAVRFYSFQ-SH--CYEHVLRFRSSVCMVRCSP--RIVAVGLA--TQIYCFDAL--TLEN--KFSVLTYPVPQLAGQGAV 241 (994)
Q Consensus 173 ~tVrLWDlk-tg--e~V~tL~f~S~V~sV~~S~--~iLAVgl~--~~I~IwDa~--Tle~--l~tL~t~p~p~~~~~g~~ 241 (994)
++|++||+. ++ +.+..+.....+..+++++ +.|+++.. +.|++||+. +.+. +..+.....
T Consensus 15 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--------- 85 (343)
T 1ri6_A 15 QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS--------- 85 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC---------
T ss_pred CeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCC---------
Confidence 689999995 44 4566666667888899987 56666654 689999987 4442 222221111
Q ss_pred ccccCccceEEcc--cEEEEccC---CeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccc
Q 001935 242 GINVGYGPMAVGP--RWLAYASN---TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKY 316 (994)
Q Consensus 242 ~vnv~~gplAlgp--RwLAyas~---~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y 316 (994)
...+++++ ++|+++.. .+.+|+.. .+... ...+.+..
T Consensus 86 -----~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-------------------~~~~~-------------~~~~~~~~- 127 (343)
T 1ri6_A 86 -----LTHISTDHQGQFVFVGSYNAGNVSVTRLE-------------------DGLPV-------------GVVDVVEG- 127 (343)
T ss_dssp -----CSEEEECTTSSEEEEEETTTTEEEEEEEE-------------------TTEEE-------------EEEEEECC-
T ss_pred -----CcEEEEcCCCCEEEEEecCCCeEEEEECC-------------------CCccc-------------cccccccC-
Confidence 13466666 55554432 24455420 00000 00000000
Q ss_pred cccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCC-CcEEE----Eecc-CCCCeEEEEECCCCCEEEEEEcC
Q 001935 317 CQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAIIS----QFKA-HTSPISALCFDPSGTLLVTASVY 390 (994)
Q Consensus 317 ~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s-~~~i~----~~~a-HtspIsaLaFSPdGtlLATAS~d 390 (994)
......+.++++++.. .+....++.|.+||+.+ ++... .+.. +...+..++|+|+|++|+.++..
T Consensus 128 ------~~~~~~~~~s~dg~~l---~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~ 198 (343)
T 1ri6_A 128 ------LDGCHSANISPDNRTL---WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 198 (343)
T ss_dssp ------CTTBCCCEECTTSSEE---EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT
T ss_pred ------CCCceEEEECCCCCEE---EEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC
Confidence 0001112233333321 12223678999999987 54432 3333 34478899999999988777755
Q ss_pred CCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---cccc-cccEEEEEEccCCCEEEEEe-CCCeEEEEecCCC
Q 001935 391 GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGIT-SATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF 463 (994)
Q Consensus 391 Gt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~---RG~t-~a~I~sIaFSpDg~~LAsgS-~dGTVhIw~I~~~ 463 (994)
+..|+||++... .| ....+..+. .++. ...+.+++|+||+++|+++. .+++|+||++...
T Consensus 199 ~~~i~~~~~~~~-----~g--------~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~ 263 (343)
T 1ri6_A 199 NSSVDVWELKDP-----HG--------NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED 263 (343)
T ss_dssp TTEEEEEESSCT-----TS--------CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEEecCC-----CC--------cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC
Confidence 667999998531 12 111222222 1211 23577899999999988555 7899999999753
No 152
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.28 E-value=7.5e-11 Score=136.86 Aligned_cols=91 Identities=10% Similarity=0.100 Sum_probs=70.4
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCC-eEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGN-NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt-~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
+.|.+||+.+++.. .+..|...+..++|||||++||+++.+|. .|.+||+.. | ... .+ .
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-------~----------~~~-~~-~ 234 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD-------G----------SVE-DL-E 234 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-------C----------CEE-EC-C
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC-------C----------cEE-Ec-c
Confidence 56999999988754 77889999999999999999997777552 588999853 2 122 22 3
Q ss_pred ccccccEEEEE--------EccCCCEEEEEeCCCeEEEEec
Q 001935 428 GITSATIQDIC--------FSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 428 G~t~a~I~sIa--------FSpDg~~LAsgS~dGTVhIw~I 460 (994)
++ ...|.+++ |||||+.+++++.+|+++||.+
T Consensus 235 ~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 235 LP-SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CS-CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred CC-CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 32 23344555 9999999999999999999998
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.27 E-value=2e-11 Score=144.77 Aligned_cols=284 Identities=11% Similarity=0.053 Sum_probs=159.8
Q ss_pred CCeEEEEEecCcEEEEEccCCCcceEeeeeccC---CEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCC
Q 001935 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDG---PVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR 150 (994)
Q Consensus 74 ~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdG---pV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~ 150 (994)
++++++.+.++.+++||+. +++...++..+.. .|..++++|++ .+||+.+..+
T Consensus 26 dg~~~~~~~d~~i~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~SpDg-------------~~la~~~~~~---------- 81 (719)
T 1z68_A 26 GQEYLHQSADNNIVLYNIE-TGQSYTILSNRTMKSVNASNYGLSPDR-------------QFVYLESDYS---------- 81 (719)
T ss_dssp SSEEEEECTTSCEEEEESS-SCCEEEEECHHHHHTTTCSEEEECTTS-------------SEEEEEEEEE----------
T ss_pred CCeEEEEcCCCCEEEEEcC-CCcEEEEEccccccccceeeEEECCCC-------------CeEEEEecCc----------
Confidence 4567777766679999994 5777777776644 48899999886 3566543210
Q ss_pred CCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEe
Q 001935 151 SHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVL 228 (994)
Q Consensus 151 ~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVgl~~~I~IwDa~Tle~l~tL~ 228 (994)
+.|. ...+++|++||+++++.+...+....+..++|+| +.||.+.++.|++||+.+.+... +.
T Consensus 82 --------~~~~------~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~-l~ 146 (719)
T 1z68_A 82 --------KLWR------YSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQ-IT 146 (719)
T ss_dssp --------ECSS------SCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEE-CC
T ss_pred --------eeEE------eecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEE-Ee
Confidence 1110 0113689999999998743233456788899998 58888889999999998877543 22
Q ss_pred ecCCccccCCCccc------cccCccceEEcc--cEEEEccCC---eeeccCCccCCCcCCCCCCCCCcCCCCCceEEEe
Q 001935 229 TYPVPQLAGQGAVG------INVGYGPMAVGP--RWLAYASNT---LLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARY 297 (994)
Q Consensus 229 t~p~p~~~~~g~~~------vnv~~gplAlgp--RwLAyas~~---~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~ 297 (994)
..........|.++ +......++++| ++|||.... +.+|.... .... .....
T Consensus 147 ~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~-----~~~~----------~~~~~-- 209 (719)
T 1z68_A 147 FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSY-----YGDE----------QYPRT-- 209 (719)
T ss_dssp CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEE-----CCSS----------SSCEE--
T ss_pred cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeec-----cCCC----------CCccc--
Confidence 11110000000000 000013467776 677776521 11110000 0000 00000
Q ss_pred ehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEE--------EEeccCC
Q 001935 298 AMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAII--------SQFKAHT 369 (994)
Q Consensus 298 A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i--------~~~~aHt 369 (994)
..+ +| |. .+ .......|.+||+.+++.+ ..+.+|.
T Consensus 210 -------------~~~-~y-----p~-------------~g-----~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 210 -------------INI-PY-----PK-------------AG-----AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp -------------EEE-EC-----CB-------------TT-----SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred -------------eee-cC-----CC-------------CC-----CCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 000 00 00 00 1123457999999987642 2245788
Q ss_pred CCeEEEEECCCCCEEEEEEcCC---CeEEEEe----CCCCcccCCCCCCccccCCcceEEEE-EecccccccEE-----E
Q 001935 370 SPISALCFDPSGTLLVTASVYG---NNINIFR----IMPSCMRSGSGNHKYDWNSSHVHLYK-LHRGITSATIQ-----D 436 (994)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dG---t~IrVwd----i~p~~~~~~sG~~~~~~~~s~~~l~~-L~RG~t~a~I~-----s 436 (994)
..|..++|||||++++++...+ ..|.+|+ +.. |. ...+.. .+.+ +...|. +
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-------g~--------~~~~~~~~~~~-~~~~~~~~~~~~ 316 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-------WD--------CPKTQEHIEES-RTGWAGGFFVST 316 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-------EE--------CCGGGEEEEEC-SSSCSSSSSCCC
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-------Cc--------eEEEEeccccc-CCceEccccCCc
Confidence 9999999999999888865432 2377778 532 20 011110 0012 223344 7
Q ss_pred EEEccCCCEEEE--EeCCCeEEEEecCCCCCC
Q 001935 437 ICFSHYSQWIAI--VSSKGTCHVFVLSPFGGD 466 (994)
Q Consensus 437 IaFSpDg~~LAs--gS~dGTVhIw~I~~~gg~ 466 (994)
++|||||++|+. +..+|..+||.++..++.
T Consensus 317 ~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 317 PVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp CEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred cEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 899999996654 557788888877665443
No 154
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.25 E-value=3.4e-10 Score=122.70 Aligned_cols=97 Identities=13% Similarity=0.087 Sum_probs=60.5
Q ss_pred CeEEEEECCCCcE--EEEeccCCCC---eEEEEECCCCCEEEEEE--------cCCCeEEEEeCCCCcccCCCCCCcccc
Q 001935 349 GIVVVKDFVTRAI--ISQFKAHTSP---ISALCFDPSGTLLVTAS--------VYGNNINIFRIMPSCMRSGSGNHKYDW 415 (994)
Q Consensus 349 G~V~VwDl~s~~~--i~~~~aHtsp---IsaLaFSPdGtlLATAS--------~dGt~IrVwdi~p~~~~~~sG~~~~~~ 415 (994)
+.|.+||+.+++. +..+.++... ...++|+|||+.|+... ..+..|.+|++.. |
T Consensus 264 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-------~------ 330 (388)
T 3pe7_A 264 RFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN-------G------ 330 (388)
T ss_dssp EEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT-------T------
T ss_pred ceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC-------C------
Confidence 4599999998873 3444442111 11237999999988654 2245699999853 2
Q ss_pred CCcceEEEEEecccc---------cccEEEEEEccCCCEEEEEeC-CCeEEEEecCCC
Q 001935 416 NSSHVHLYKLHRGIT---------SATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPF 463 (994)
Q Consensus 416 ~~s~~~l~~L~RG~t---------~a~I~sIaFSpDg~~LAsgS~-dGTVhIw~I~~~ 463 (994)
.+..|..+.. ...+.+++|||||++|+.++. +|..+||.++..
T Consensus 331 -----~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 331 -----TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp -----EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred -----ceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 3334433211 013678999999999998775 688999988654
No 155
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.24 E-value=1.6e-10 Score=136.72 Aligned_cols=243 Identities=14% Similarity=0.152 Sum_probs=138.5
Q ss_pred EEEEECCCCeEE-EEE-eCC-----------------CcEEEEEecC-CeEEEEeCCeEEEEECCCCceeEEEeecCCcc
Q 001935 175 VRFYSFQSHCYE-HVL-RFR-----------------SSVCMVRCSP-RIVAVGLATQIYCFDALTLENKFSVLTYPVPQ 234 (994)
Q Consensus 175 VrLWDlktge~V-~tL-~f~-----------------S~V~sV~~S~-~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~ 234 (994)
| +||+++|+.+ ..+ ... ..|.++++++ +.|+++.++.|++||+.+.+... +..+..
T Consensus 46 i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~-- 121 (706)
T 2z3z_A 46 L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTY-LFDTNE-- 121 (706)
T ss_dssp E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEEETTEEEEEETTTTEEEE-EECCTT--
T ss_pred E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEEECCEEEEEECCCCceEE-ccCCcc--
Confidence 8 9999999874 333 322 4589999998 57777788999999998876543 332222
Q ss_pred ccCCCccccccCccceEEcc--cEEEEccC-CeeeccCCc-----cCCCcCCC---C---------------CCCCCcCC
Q 001935 235 LAGQGAVGINVGYGPMAVGP--RWLAYASN-TLLLSNSGR-----LSPQNLTP---S---------------GVSPSTSP 288 (994)
Q Consensus 235 ~~~~g~~~vnv~~gplAlgp--RwLAyas~-~~~iwd~G~-----~s~qsltp---~---------------~~S~stSp 288 (994)
....++++| ++|||..+ .+.+|+... -....++. . ...+.+||
T Consensus 122 -----------~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp 190 (706)
T 2z3z_A 122 -----------ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP 190 (706)
T ss_dssp -----------CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT
T ss_pred -----------cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC
Confidence 124467877 78998754 456777422 11111111 1 24556788
Q ss_pred CCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEec--
Q 001935 289 GGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK-- 366 (994)
Q Consensus 289 ~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~-- 366 (994)
++..++.--..+.... .. .+..+. ... +.. ...++.. ......+..|.+||+.+++......
T Consensus 191 Dg~~la~~~~d~~~~~----~~-~~~~~~----~~~---~~~--~~~~y~~--~g~~~~~~~l~~~d~~~~~~~~~~~~~ 254 (706)
T 2z3z_A 191 KGSCLAFYRMDQSMVK----PT-PIVDYH----PLE---AES--KPLYYPM--AGTPSHHVTVGIYHLATGKTVYLQTGE 254 (706)
T ss_dssp TSSEEEEEEEECTTSC----CE-EEEECC----SSS---CEE--EEECCCB--TTSCCCEEEEEEEETTTTEEEECCCCS
T ss_pred CCCEEEEEEECCCCCc----eE-EeeccC----CCC---Cce--EEeeCCC--CCCCCCeeEEEEEECCCCceEeeccCC
Confidence 8766543211110000 00 000000 000 000 0000000 0012345789999999987654442
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCC----CeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccc---cEEEEEE
Q 001935 367 AHTSPISALCFDPSGTLLVTASVYG----NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSA---TIQDICF 439 (994)
Q Consensus 367 aHtspIsaLaFSPdGtlLATAS~dG----t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a---~I~sIaF 439 (994)
.|...|..++|+|||++|++++.++ ..|++||+.. | ..+..+....... .+.+++|
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~-------g----------~~~~~~~~~~~~~~~~~~~~~~~ 317 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET-------G----------RFVRTLFVETDKHYVEPLHPLTF 317 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT-------C----------CEEEEEEEEECSSCCCCCSCCEE
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC-------C----------ceeeEEEEccCCCeECccCCcee
Confidence 5778899999999999999987644 2689999853 2 1222222111111 2467899
Q ss_pred cc--CCCEEEEEeCCCeEEEEecCCCCC
Q 001935 440 SH--YSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 440 Sp--Dg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
|| ||++|++++.+|+++||.++..++
T Consensus 318 sp~~dg~~l~~~~~~g~~~l~~~~~~~~ 345 (706)
T 2z3z_A 318 LPGSNNQFIWQSRRDGWNHLYLYDTTGR 345 (706)
T ss_dssp CTTCSSEEEEEECTTSSCEEEEEETTSC
T ss_pred ecCCCCEEEEEEccCCccEEEEEECCCC
Confidence 99 999999999999999999985443
No 156
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.23 E-value=8.7e-11 Score=138.79 Aligned_cols=246 Identities=13% Similarity=0.091 Sum_probs=141.6
Q ss_pred CCEEEEEECCCCeEEEEEeCCC----cEEEEEecC--CeEEEEeC----------CeEEEEECCCCceeEEEeecCCccc
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRS----SVCMVRCSP--RIVAVGLA----------TQIYCFDALTLENKFSVLTYPVPQL 235 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S----~V~sV~~S~--~iLAVgl~----------~~I~IwDa~Tle~l~tL~t~p~p~~ 235 (994)
+++|++||+.+++....+..+. .|.+++++| +.|+++.. ..|++||+.+.+. ..+......
T Consensus 36 dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~-- 112 (723)
T 1xfd_A 36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVS-- 112 (723)
T ss_dssp SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCC--
T ss_pred CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccc--
Confidence 4689999999999888887654 389999998 57777664 5799999998875 333322110
Q ss_pred cCCCccccccCccceEEcc--cEEEEccC-CeeeccCCccCCCcCCC----C------------------CCCCCcCCCC
Q 001935 236 AGQGAVGINVGYGPMAVGP--RWLAYASN-TLLLSNSGRLSPQNLTP----S------------------GVSPSTSPGG 290 (994)
Q Consensus 236 ~~~g~~~vnv~~gplAlgp--RwLAyas~-~~~iwd~G~~s~qsltp----~------------------~~S~stSp~~ 290 (994)
......++++| ++|||..+ .+.+|+...-....++. . ...+.+||++
T Consensus 113 --------~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg 184 (723)
T 1xfd_A 113 --------NAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG 184 (723)
T ss_dssp --------SCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS
T ss_pred --------cccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC
Confidence 00023466777 78998875 46677641110111111 0 1346678887
Q ss_pred CceEEEeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC--
Q 001935 291 SSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-- 368 (994)
Q Consensus 291 gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aH-- 368 (994)
..++.-...+.... ++ .+..+....++.. ..+.+.+.+ ....+..|.+||+.+++....+..|
T Consensus 185 ~~la~~~~~~~~~~----~~-~~~~~~~~~~~~~--~~~~~~~~G--------~~~~~~~l~~~d~~~~~~~~~l~~~~~ 249 (723)
T 1xfd_A 185 TRLAYAAINDSRVP----IM-ELPTYTGSIYPTV--KPYHYPKAG--------SENPSISLHVIGLNGPTHDLEMMPPDD 249 (723)
T ss_dssp SEEEEEEEECTTSC----EE-EECCCSSSSSCCC--EEEECCBTT--------SCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred CEEEEEEECCCccc----eE-EeeccCCcCCCcc--eeccCCCCC--------CCCCeeEEEEEECCCCceeEEeeCCcc
Confidence 76654211111000 00 0000000000000 000000000 0122458999999998866667665
Q ss_pred ----CCCeEEEEECCCCCEEEEEEcCC---CeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccE----EEE
Q 001935 369 ----TSPISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATI----QDI 437 (994)
Q Consensus 369 ----tspIsaLaFSPdGtlLATAS~dG---t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I----~sI 437 (994)
...|..++|||||++|++.+.++ ..|++||+.. | .....+. +.+...+ .++
T Consensus 250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-------g----------~~~~~~~-~~~~~~~~~~~~~~ 311 (723)
T 1xfd_A 250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-------G----------VCTKKHE-DESEAWLHRQNEEP 311 (723)
T ss_dssp GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-------C----------CEEEEEE-EECSSCCCCCCCCC
T ss_pred CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-------C----------cceEEEE-eccCCEEeccCCCc
Confidence 67899999999999998876533 4689999853 3 1222221 1122223 378
Q ss_pred EEccCCCEEEEE--eCCC----eEEEEecC
Q 001935 438 CFSHYSQWIAIV--SSKG----TCHVFVLS 461 (994)
Q Consensus 438 aFSpDg~~LAsg--S~dG----TVhIw~I~ 461 (994)
+|||||++|+.. ..++ +.+||.++
T Consensus 312 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred eEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 999999988864 4667 77777776
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.22 E-value=8.3e-10 Score=115.89 Aligned_cols=211 Identities=10% Similarity=0.015 Sum_probs=131.1
Q ss_pred CCEEEEEECCCCeEEEEEeCCC---cEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEeecC-CccccCCCcccc
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRS---SVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYP-VPQLAGQGAVGI 243 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S---~V~sV~~S~--~iLAVgl--~~~I~IwDa~Tle~l~tL~t~p-~p~~~~~g~~~v 243 (994)
+++|++||+.+++.+..+.... .+..+++++ +.|+++. ++.|++||+.+++.+..+.... .. .+.
T Consensus 10 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------~~~ 82 (337)
T 1pby_B 10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-------RVK 82 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE-------EEE
T ss_pred CCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc-------ccc
Confidence 3689999999999999998776 688899987 4555544 3589999999998777665321 00 000
Q ss_pred ccCccceEEcc--cEEEEcc--------------CCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhc
Q 001935 244 NVGYGPMAVGP--RWLAYAS--------------NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAA 307 (994)
Q Consensus 244 nv~~gplAlgp--RwLAyas--------------~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~ 307 (994)
....+++++ ++|+++. ..+.+|+.. .+..+.
T Consensus 83 --~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~-------------------~~~~~~------------ 129 (337)
T 1pby_B 83 --SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-------------------TLSRRK------------ 129 (337)
T ss_dssp --CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-------------------TTEEEE------------
T ss_pred --cccceEECCCCCEEEEEecccccccccccccCceEEEEECC-------------------CCcEEE------------
Confidence 113467766 5666653 233444320 011100
Q ss_pred ccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCC--CCeEEEEECCCCCEEE
Q 001935 308 GLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHT--SPISALCFDPSGTLLV 385 (994)
Q Consensus 308 Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHt--spIsaLaFSPdGtlLA 385 (994)
.+. .......+.++++++... .+ ++.|.+||+.+++.+..+..+. .++ +|+|||++|+
T Consensus 130 ----~~~-------~~~~~~~~~~s~dg~~l~----~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~ 189 (337)
T 1pby_B 130 ----AFE-------APRQITMLAWARDGSKLY----GL--GRDLHVMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVW 189 (337)
T ss_dssp ----EEE-------CCSSCCCEEECTTSSCEE----EE--SSSEEEEETTTTEEEEEECSTTTTTTT---BCCCBCCCCC
T ss_pred ----EEe-------CCCCcceeEECCCCCEEE----Ee--CCeEEEEECCCCcEeeeeeccccCCCc---eeCCCccEEe
Confidence 000 000011122333333222 12 5789999999999888887665 444 8999999887
Q ss_pred EEEcCCCe-----------------------EEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 001935 386 TASVYGNN-----------------------INIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (994)
Q Consensus 386 TAS~dGt~-----------------------IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpD 442 (994)
.++..+.. |.+||+.. +. .....+ +.....+.+++|+||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-------~~---------~~~~~~--~~~~~~~~~~~~s~d 251 (337)
T 1pby_B 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET-------GE---------MAMREV--RIMDVFYFSTAVNPA 251 (337)
T ss_dssp CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT-------CC---------EEEEEE--EECSSCEEEEEECTT
T ss_pred eeccCCCceeeeeeccccccccccccccccceEEEeCCC-------CC---------ceEeec--CCCCCceeeEEECCC
Confidence 76655543 57778743 21 112222 222346889999999
Q ss_pred CCEEEEEeCCCeEEEEecCC
Q 001935 443 SQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 443 g~~LAsgS~dGTVhIw~I~~ 462 (994)
+++|+++ +++|++|++..
T Consensus 252 g~~l~~~--~~~v~~~d~~~ 269 (337)
T 1pby_B 252 KTRAFGA--YNVLESFDLEK 269 (337)
T ss_dssp SSEEEEE--ESEEEEEETTT
T ss_pred CCEEEEe--CCeEEEEECCC
Confidence 9999998 79999999864
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.21 E-value=2.8e-09 Score=116.73 Aligned_cols=102 Identities=17% Similarity=0.220 Sum_probs=69.6
Q ss_pred CCeEEEEECC-CCcE--EEEec--cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceE-
Q 001935 348 AGIVVVKDFV-TRAI--ISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH- 421 (994)
Q Consensus 348 dG~V~VwDl~-s~~~--i~~~~--aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~- 421 (994)
++.|.+||+. +++. +..+. .|...+..++|+|||++|+.++..+..|.||++... +|. ...
T Consensus 166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g~--------~~~~ 232 (365)
T 1jof_A 166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-----THM--------PVYT 232 (365)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----TCC--------EEEE
T ss_pred CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-----CCc--------EEEc
Confidence 4689999998 6654 23444 356678999999999999999886778999987531 121 011
Q ss_pred EEEEe---cccc--cc------cEEEEE-EccCCCEEEEEeCCC------eEEEEecCC
Q 001935 422 LYKLH---RGIT--SA------TIQDIC-FSHYSQWIAIVSSKG------TCHVFVLSP 462 (994)
Q Consensus 422 l~~L~---RG~t--~a------~I~sIa-FSpDg~~LAsgS~dG------TVhIw~I~~ 462 (994)
...+. .+.. .. .+.+++ |||||++|+++.... +|.||++..
T Consensus 233 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~ 291 (365)
T 1jof_A 233 HHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred cceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC
Confidence 11221 1111 11 488999 999999998876432 899999975
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.13 E-value=9.1e-11 Score=133.50 Aligned_cols=98 Identities=13% Similarity=0.272 Sum_probs=81.1
Q ss_pred ccCCCCeEEEEECCCC--------c---EEEEeccCCCCeEEEEECCC-CCEEEEEEcCCCeEEEEeCCCCcccCCCCCC
Q 001935 344 DMDNAGIVVVKDFVTR--------A---IISQFKAHTSPISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~--------~---~i~~~~aHtspIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~sG~~ 411 (994)
+++.|+.|+|||+.++ + .+..+.+|..+|.+|+|+|+ +.+||+++.+|+ |+|||+.. +
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v~iwD~~~-------~-- 182 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-IAVLQVTE-------T-- 182 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-EEEEEESS-------S--
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-EEEEEcCC-------C--
Confidence 6788999999998754 1 25677789999999999998 899999999776 99999963 2
Q ss_pred ccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 412 ~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
..+... .+ +...|++++|+|||++||+|+.||+|+||++.
T Consensus 183 --------~~~~~~-~~-~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 183 --------VKVCAT-LP-STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp --------EEEEEE-EC-GGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred --------cceeec-cC-CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 233333 23 34679999999999999999999999999986
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.13 E-value=5.5e-10 Score=134.45 Aligned_cols=289 Identities=14% Similarity=0.105 Sum_probs=158.4
Q ss_pred CCeEEEEEecCcEEEEEccCCCcceEeeeeccCC---EEE--EEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCC
Q 001935 74 FKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGP---VSF--LQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQ 148 (994)
Q Consensus 74 ~~~vL~lGy~~G~qVWDv~~~g~v~ells~hdGp---V~~--v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q 148 (994)
++++|+.+ ++.+++||+. +++...++..|... +.+ +.++|++ ..||+...+..
T Consensus 27 dg~~~~~~-~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Spdg-------------~~l~~~~~~~~------- 84 (740)
T 4a5s_A 27 DHEYLYKQ-ENNILVFNAE-YGNSSVFLENSTFDEFGHSINDYSISPDG-------------QFILLEYNYVK------- 84 (740)
T ss_dssp SSEEEEEE-TTEEEEEETT-TCCEEEEECTTTTTTCCSCCCEEEECTTS-------------SEEEEEEEEEE-------
T ss_pred CCcEEEEc-CCcEEEEECC-CCceEEEEechhhhhhcccccceEECCCC-------------CEEEEEECCee-------
Confidence 56788887 6679999995 57777888877643 333 6778776 35666443210
Q ss_pred CCCCccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEeCCeEEEEECCCCceeEE
Q 001935 149 NRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGLATQIYCFDALTLENKFS 226 (994)
Q Consensus 149 ~~~~~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVgl~~~I~IwDa~Tle~l~t 226 (994)
+ | .......+.+||+++++......+...+..++|+| +.||.+.+..|++||+.+.+..+
T Consensus 85 -------~----~------r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~- 146 (740)
T 4a5s_A 85 -------Q----W------RHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR- 146 (740)
T ss_dssp -------C----S------SSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE-
T ss_pred -------e----E------EEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEE-
Confidence 0 0 00112578899999998754334467899999998 68888889999999998876432
Q ss_pred EeecCCccccCCCccc------cccCccceEEcc--cEEEEccC---CeeeccCCccCCCcCCCCCCCCCcCCCCCceEE
Q 001935 227 VLTYPVPQLAGQGAVG------INVGYGPMAVGP--RWLAYASN---TLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVA 295 (994)
Q Consensus 227 L~t~p~p~~~~~g~~~------vnv~~gplAlgp--RwLAyas~---~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa 295 (994)
+...........|.++ +......++++| ++|||... .+.+|..-......
T Consensus 147 lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~------------------- 207 (740)
T 4a5s_A 147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES------------------- 207 (740)
T ss_dssp CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT-------------------
T ss_pred EcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC-------------------
Confidence 2211110000000000 000112356776 77777642 11122100000000
Q ss_pred EeehhhhhhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCC---Cc--EEEEec----
Q 001935 296 RYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT---RA--IISQFK---- 366 (994)
Q Consensus 296 ~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s---~~--~i~~~~---- 366 (994)
+.......+ -+|. .+ .......|.|||+.+ ++ ....+.
T Consensus 208 ------------~~~~~~~~~---~yp~-------------~G-----~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~ 254 (740)
T 4a5s_A 208 ------------LQYPKTVRV---PYPK-------------AG-----AVNPTVKFFVVNTDSLSSVTNATSIQITAPAS 254 (740)
T ss_dssp ------------CSSCEEEEE---ECCB-------------TT-----SCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred ------------CCCCcceee---cCCC-------------Cc-----CcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence 000000000 0000 00 112234788999998 73 223343
Q ss_pred --cCCCCeEEEEECCCCCEEEEEEcCC---CeEEEEeCCCCcccCCCCCCccccCC-cceEEEEEecccccccE-----E
Q 001935 367 --AHTSPISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNS-SHVHLYKLHRGITSATI-----Q 435 (994)
Q Consensus 367 --aHtspIsaLaFSPdGtlLATAS~dG---t~IrVwdi~p~~~~~~sG~~~~~~~~-s~~~l~~L~RG~t~a~I-----~ 435 (994)
+|..-|..++|+|||+++|.....+ ..|++||+.. |.. .|.. ....+.+ .+ +...| .
T Consensus 255 ~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-------g~~--~~~~~~~~~l~~--~~-~~~~v~~~~~~ 322 (740)
T 4a5s_A 255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-------SSG--RWNCLVARQHIE--MS-TTGWVGRFRPS 322 (740)
T ss_dssp HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-------TTT--EEEECGGGCEEE--EC-SSSCSSSSSCC
T ss_pred CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-------Ccc--ccceeEEEEeee--cc-CCceEccCcCC
Confidence 3888899999999999888765543 2588999753 210 0000 0011211 12 22223 3
Q ss_pred EEEEccCCCEEE-EEe-CCCeEEEEecCCCCCC
Q 001935 436 DICFSHYSQWIA-IVS-SKGTCHVFVLSPFGGD 466 (994)
Q Consensus 436 sIaFSpDg~~LA-sgS-~dGTVhIw~I~~~gg~ 466 (994)
+.+|||||++|+ ..| .+|.-|||-++..++.
T Consensus 323 ~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 323 EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp CCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred CceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 789999999988 665 5677777776655554
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.08 E-value=6e-09 Score=120.87 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=67.6
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEE--------ECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceE
Q 001935 350 IVVVKDFVTRAIISQFKAHTSPISALC--------FDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (994)
Q Consensus 350 ~V~VwDl~s~~~i~~~~aHtspIsaLa--------FSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~ 421 (994)
.|.+||+.+++.. .+..|...+..++ |+|||+++++++.+|+ ++||++ . ..
T Consensus 219 ~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~-~~l~~~-g------------------~~ 277 (582)
T 3o4h_A 219 RLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR-SAVFID-G------------------ER 277 (582)
T ss_dssp EEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTE-EEEEET-T------------------EE
T ss_pred EEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCc-EEEEEE-C------------------Ce
Confidence 7999999998887 8888988888788 9999999999998665 999997 2 12
Q ss_pred EEEEecccccccEEEEEEccCCCEEEEEeCCCe-EEEEecCC
Q 001935 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGT-CHVFVLSP 462 (994)
Q Consensus 422 l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGT-VhIw~I~~ 462 (994)
+.. ....|.+++|| |++++++++.+.+ -.||.++.
T Consensus 278 ~~~-----~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 278 VEA-----PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp ECC-----CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred ecc-----CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 211 12468899999 9999999888866 45665554
No 162
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.07 E-value=4.3e-07 Score=94.82 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=69.6
Q ss_pred CCCeEEEEECCCCcEEEEeccC--CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 001935 347 NAGIVVVKDFVTRAIISQFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~aH--tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~ 424 (994)
.++.|.+||.. ++.+..+..+ ...+..|+|+|+|+++++...++..|++|+.. | ..+..
T Consensus 183 ~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--------g----------~~~~~ 243 (286)
T 1q7f_A 183 RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--------G----------QLISA 243 (286)
T ss_dssp GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--------S----------CEEEE
T ss_pred CCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--------C----------CEEEE
Confidence 35678899974 4566666543 46788999999999998887644369999953 3 24445
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 425 L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
+..+.....+.+|+|+|||+.+++ +.+++|+||++..
T Consensus 244 ~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 244 LESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 543333335889999999986666 6799999999755
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.06 E-value=1.9e-08 Score=106.38 Aligned_cols=57 Identities=19% Similarity=0.138 Sum_probs=45.6
Q ss_pred CCEEEEEECCCCeEEEEEeCCC--cEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEe
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVL 228 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S--~V~sV~~S~--~iLAVgl--~~~I~IwDa~Tle~l~tL~ 228 (994)
+++|.+||+.+++.+.++.... .+..+++++ +.++++. +++|++||+.+++.+..+.
T Consensus 20 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 20 PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 3689999999999999998776 688888887 4555543 4689999999988776665
No 164
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.01 E-value=1.7e-07 Score=101.15 Aligned_cols=53 Identities=19% Similarity=0.123 Sum_probs=41.2
Q ss_pred CCeEEEEECC--CCc--EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCC
Q 001935 348 AGIVVVKDFV--TRA--IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 348 dG~V~VwDl~--s~~--~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (994)
++.|.|||+. +++ .+..+.. ...+..|+|+|||++|++++.++..|.||++.+
T Consensus 281 ~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 281 ADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp SCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 5789999985 344 4555555 456789999999999999997777899988753
No 165
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.00 E-value=4.5e-08 Score=105.52 Aligned_cols=101 Identities=14% Similarity=0.116 Sum_probs=64.1
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEc---------------CCCeEEEEeCCCCcccCCCCCCc
Q 001935 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASV---------------YGNNINIFRIMPSCMRSGSGNHK 412 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHtspIsaLaFSP-dGtlLATAS~---------------dGt~IrVwdi~p~~~~~~sG~~~ 412 (994)
+.|.+||+.+++........ ... ++|+| ||++|++++. .+..|.+|++.. |
T Consensus 264 ~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-------~--- 330 (396)
T 3c5m_A 264 RVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-------K--- 330 (396)
T ss_dssp EEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT-------T---
T ss_pred ceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc-------C---
Confidence 55999999988653322111 233 89999 9999998652 235688999753 2
Q ss_pred cccCCcceEEEEEeccccc---------ccEEEEEEccCCCEEEEEeC-CCeEEEEecCCCCCCcccc
Q 001935 413 YDWNSSHVHLYKLHRGITS---------ATIQDICFSHYSQWIAIVSS-KGTCHVFVLSPFGGDSGFQ 470 (994)
Q Consensus 413 ~~~~~s~~~l~~L~RG~t~---------a~I~sIaFSpDg~~LAsgS~-dGTVhIw~I~~~gg~~~~~ 470 (994)
.+..|..+... ..+.+++|+|||++|+.++. +++.+||.++..++...+.
T Consensus 331 --------~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~ 390 (396)
T 3c5m_A 331 --------SAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLE 390 (396)
T ss_dssp --------BCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC---
T ss_pred --------ceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccccc
Confidence 11122221110 02566899999999988775 5788999988777665554
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.97 E-value=2.3e-07 Score=102.57 Aligned_cols=96 Identities=8% Similarity=0.079 Sum_probs=65.8
Q ss_pred CCCCeEEEEECCCCc--EEEEecc------CC----CCeEEEEECCCCCEEEEEEc-C---------CCeEEEEeCCCCc
Q 001935 346 DNAGIVVVKDFVTRA--IISQFKA------HT----SPISALCFDPSGTLLVTASV-Y---------GNNINIFRIMPSC 403 (994)
Q Consensus 346 s~dG~V~VwDl~s~~--~i~~~~a------Ht----spIsaLaFSPdGtlLATAS~-d---------Gt~IrVwdi~p~~ 403 (994)
..+|.|.++|+.... .+..+.- +. .....++|+|||+.|..+.. + +..|.|||+..
T Consensus 218 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-- 295 (361)
T 2oiz_A 218 SYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-- 295 (361)
T ss_dssp BTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT--
T ss_pred eCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC--
Confidence 356889999987553 2222211 10 11113789999888776643 2 23699999853
Q ss_pred ccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 404 MRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 404 ~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
+ +.+.++.-|. +++|+|+|||++|++++. ++|.||++...
T Consensus 296 -----~----------~~v~~i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 296 -----K----------QRVARIPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp -----T----------EEEEEEECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred -----C----------cEEEEEecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 2 5666665442 789999999999998887 99999998764
No 167
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=98.92 E-value=5e-09 Score=124.29 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=40.7
Q ss_pred CEEEEEECCCCeEEEEEeCCC----cEEEEEecC--CeEEEEeC----------CeEEEEECCCCce
Q 001935 173 TAVRFYSFQSHCYEHVLRFRS----SVCMVRCSP--RIVAVGLA----------TQIYCFDALTLEN 223 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S----~V~sV~~S~--~iLAVgl~----------~~I~IwDa~Tle~ 223 (994)
++|++||+.+++....+..+. .|.+++++| +.|+.+.+ .+|++||+.+.+.
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~ 102 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF 102 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence 579999999999887776543 388999988 57776654 6899999988764
No 168
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.87 E-value=3.9e-07 Score=97.22 Aligned_cols=86 Identities=12% Similarity=0.173 Sum_probs=63.9
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEE-EEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISA-LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsa-LaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
...|.+|| +++....+..|...|.. ++|+ || ++++++.+| .++|| +. . | .. ..+.
T Consensus 243 ~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~-~~~l~-~~-~------g----------~~-~~~~ 298 (347)
T 2gop_A 243 HNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG-SVNLY-IW-D------G----------EI-KPIA 298 (347)
T ss_dssp SCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT-EEEEE-EE-S------S----------SE-EEEE
T ss_pred cceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCC-cEEEE-Ec-C------C----------ce-EEEe
Confidence 45788888 66666666677888986 9999 99 999999866 58999 84 2 3 12 2333
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeE-EEEecC
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSSKGTC-HVFVLS 461 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~dGTV-hIw~I~ 461 (994)
.+ ...|.+++|+| +++++++.+++. +||.++
T Consensus 299 ~~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 299 KG--RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp CS--SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred cC--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 33 35689999999 788887777775 899987
No 169
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.83 E-value=1.5e-06 Score=94.47 Aligned_cols=232 Identities=10% Similarity=-0.030 Sum_probs=139.8
Q ss_pred CeEEEEEec-CcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCc
Q 001935 75 KQVLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (994)
Q Consensus 75 ~~vL~lGy~-~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~ 153 (994)
.++.++... +.+.+||.. ++++...+. .....+.+++.|+. .|.+...
T Consensus 54 ~~lyv~~~~~~~v~viD~~-t~~~~~~i~-~~~~p~~i~~~~~g--------------~lyv~~~--------------- 102 (328)
T 3dsm_A 54 GIGWIVVNNSHVIFAIDIN-TFKEVGRIT-GFTSPRYIHFLSDE--------------KAYVTQI--------------- 102 (328)
T ss_dssp TEEEEEEGGGTEEEEEETT-TCCEEEEEE-CCSSEEEEEEEETT--------------EEEEEEB---------------
T ss_pred CEEEEEEcCCCEEEEEECc-ccEEEEEcC-CCCCCcEEEEeCCC--------------eEEEEEC---------------
Confidence 456666665 459999985 466655553 23456777776543 2333210
Q ss_pred cccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCCC------cEEEEEecCCeEEEEe---CCeEEEEECCCCcee
Q 001935 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRS------SVCMVRCSPRIVAVGL---ATQIYCFDALTLENK 224 (994)
Q Consensus 154 ~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~S------~V~sV~~S~~iLAVgl---~~~I~IwDa~Tle~l 224 (994)
..++|.+||+++++.+.++.... ....|.+..+.|.|+. ++.|.+||+.+++.+
T Consensus 103 -----------------~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~ 165 (328)
T 3dsm_A 103 -----------------WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVV 165 (328)
T ss_dssp -----------------SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred -----------------CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence 12689999999999998887655 5666666666666553 568999999998877
Q ss_pred EEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhh
Q 001935 225 FSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQ 304 (994)
Q Consensus 225 ~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~ 304 (994)
.++.....| ..+++.+ ++..+++.
T Consensus 166 ~~i~~g~~p--------------~~i~~~~----------------------------------dG~l~v~~-------- 189 (328)
T 3dsm_A 166 DELTIGIQP--------------TSLVMDK----------------------------------YNKMWTIT-------- 189 (328)
T ss_dssp EEEECSSCB--------------CCCEECT----------------------------------TSEEEEEB--------
T ss_pred EEEEcCCCc--------------cceEEcC----------------------------------CCCEEEEE--------
Confidence 766532221 1122222 11100000
Q ss_pred hhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCE
Q 001935 305 FAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTL 383 (994)
Q Consensus 305 la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aH-tspIsaLaFSPdGtl 383 (994)
.+ .|. ..+ .....+.|.++|..+++++..+... ......|+|+|||++
T Consensus 190 --~~------~~~--------~~~---------------~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~ 238 (328)
T 3dsm_A 190 --DG------GYE--------GSP---------------YGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDT 238 (328)
T ss_dssp --CC------BCT--------TCS---------------SCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCE
T ss_pred --CC------Ccc--------CCc---------------cccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCE
Confidence 00 000 000 0113578999999999888777643 235789999999999
Q ss_pred EEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE-E----eCCCeEEEE
Q 001935 384 LVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI-V----SSKGTCHVF 458 (994)
Q Consensus 384 LATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs-g----S~dGTVhIw 458 (994)
|..+.. .|.+||+.. +.. .. ... +..+ ....+.|+|+|++..|.+ . ..+++|.+|
T Consensus 239 lyv~~~---~v~~~d~~t-------~~~----~~--~~~--~~~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~ 298 (328)
T 3dsm_A 239 LYWINN---DIWRMPVEA-------DRV----PV--RPF--LEFR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRY 298 (328)
T ss_dssp EEEESS---SEEEEETTC-------SSC----CS--SCS--BCCC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEE
T ss_pred EEEEcc---EEEEEECCC-------Cce----ee--eee--ecCC--CCceEEEEEcCCCCeEEEEcccccccCCEEEEE
Confidence 988764 588999753 210 00 000 0011 245789999995554544 4 578999999
Q ss_pred ecC
Q 001935 459 VLS 461 (994)
Q Consensus 459 ~I~ 461 (994)
+..
T Consensus 299 d~~ 301 (328)
T 3dsm_A 299 SPQ 301 (328)
T ss_dssp CTT
T ss_pred CCC
Confidence 975
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.83 E-value=1.8e-07 Score=109.77 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=68.1
Q ss_pred CeEEEEECC-CC---cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 001935 349 GIVVVKDFV-TR---AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (994)
Q Consensus 349 G~V~VwDl~-s~---~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~ 424 (994)
..|.+||+. ++ +.......|...+..++|+|||+++++++.+|+ ++||.+... .| .+..
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~-~~l~~~~~~-----~~-----------~~~~ 279 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW-WNLHRVDPA-----TG-----------AATQ 279 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS-CEEEEECTT-----TC-----------CEEE
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCC-eEEEEEECC-----CC-----------ceee
Confidence 479999998 56 444444556789999999999998888877664 455554321 02 1222
Q ss_pred Eecccccc-------cEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 425 LHRGITSA-------TIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 425 L~RG~t~a-------~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
+..+.... .+.+++|+||++++++++. ++++||.++..++
T Consensus 280 l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 280 LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred cccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 22221111 1567999999999999999 9999998876544
No 171
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.82 E-value=2.4e-07 Score=100.22 Aligned_cols=98 Identities=7% Similarity=-0.033 Sum_probs=67.4
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCC-----CeEEEEeCCCCcccCCCCCCccccCCcc
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYG-----NNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSP-dGtlLATAS~dG-----t~IrVwdi~p~~~~~~sG~~~~~~~~s~ 419 (994)
..++.|.+||+.+++. ..+..|...+..++|+| ||++||.++..+ ..|.++++.. +
T Consensus 165 ~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-------~---------- 226 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG-------T---------- 226 (388)
T ss_dssp CCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS-------C----------
T ss_pred CCcceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC-------C----------
Confidence 4567899999998864 45556777899999999 999999888642 1356666531 1
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCC-C----eEEEEecCC
Q 001935 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-G----TCHVFVLSP 462 (994)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~d-G----TVhIw~I~~ 462 (994)
.+..+..+.....+..++|||||++|+..+.+ + +|++|++..
T Consensus 227 -~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (388)
T 3pe7_A 227 -NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET 273 (388)
T ss_dssp -CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT
T ss_pred -ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCC
Confidence 22333333222357889999999988776653 2 388888754
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.81 E-value=1.8e-06 Score=93.40 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=72.0
Q ss_pred CCCCeEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEc------CCCeEEEEeCCCCcccCCCCCCccccCC
Q 001935 346 DNAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASV------YGNNINIFRIMPSCMRSGSGNHKYDWNS 417 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~--aHtspIsaLaFSPdGtlLATAS~------dGt~IrVwdi~p~~~~~~sG~~~~~~~~ 417 (994)
..++.|++||..+++.+..+. .+...+.+++|+| |.++++.+. .+..|++|++.. |
T Consensus 215 ~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-------g-------- 278 (329)
T 3fvz_A 215 RENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-------G-------- 278 (329)
T ss_dssp TTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-------C--------
T ss_pred CCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-------C--------
Confidence 356789999999888888884 4667899999999 544444332 133589999753 3
Q ss_pred cceEEEEEecc-cccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 418 SHVHLYKLHRG-ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 418 s~~~l~~L~RG-~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
..+..+..+ .....+.+|+|+|||+.+++.+.+++|++|++..
T Consensus 279 --~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 279 --EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp --CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred --eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 355555311 1223589999999998888889999999999864
No 173
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.74 E-value=3.5e-06 Score=88.72 Aligned_cols=90 Identities=12% Similarity=0.200 Sum_probs=60.7
Q ss_pred CCCeEEEEECC-CCcE---EEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 347 NAGIVVVKDFV-TRAI---ISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 347 ~dG~V~VwDl~-s~~~---i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
.++.|.+||+. +++. ...+..+...+..|+|+++|+++++. +..|.+|+.. | ..+
T Consensus 191 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~---~~~v~~~~~~--------g----------~~~ 249 (296)
T 3e5z_A 191 GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA---GDGVHVLTPD--------G----------DEL 249 (296)
T ss_dssp TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---TTEEEEECTT--------S----------CEE
T ss_pred CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---CCeEEEECCC--------C----------CEE
Confidence 45678888876 4443 23333455566789999999988877 3458999863 3 344
Q ss_pred EEEecccccccEEEEEE-ccCCCEEEEEeCCCeEEEEecCCC
Q 001935 423 YKLHRGITSATIQDICF-SHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaF-SpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
..+... .. +.+++| +||+++|.+++.++ ||.+.+.
T Consensus 250 ~~~~~~--~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~~ 285 (296)
T 3e5z_A 250 GRVLTP--QT-TSNLCFGGPEGRTLYMTVSTE---FWSIETN 285 (296)
T ss_dssp EEEECS--SC-CCEEEEESTTSCEEEEEETTE---EEEEECS
T ss_pred EEEECC--CC-ceeEEEECCCCCEEEEEcCCe---EEEEEcc
Confidence 444322 23 789999 69999999999874 5555554
No 174
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.74 E-value=7.2e-08 Score=116.10 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=70.2
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe-
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH- 426 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~- 426 (994)
.+.+.|||+.+++. ..+..|...+...+|||||+.||.++. ..|.||++.. |. ...+.
T Consensus 91 ~~~~~~~d~~~~~~-~~l~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~-------~~-----------~~~lt~ 149 (740)
T 4a5s_A 91 TASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVWN--NDIYVKIEPN-------LP-----------SYRITW 149 (740)
T ss_dssp EEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEET--TEEEEESSTT-------SC-----------CEECCS
T ss_pred ceEEEEEECCCCcE-EEcccCCCcceeeEECCCCCEEEEEEC--CeEEEEECCC-------Cc-----------eEEEcC
Confidence 46789999999875 457788889999999999999999864 5799999853 21 11111
Q ss_pred ccccc----------------ccEEEEEEccCCCEEEEEeCCCe-EEEEecCCCCC
Q 001935 427 RGITS----------------ATIQDICFSHYSQWIAIVSSKGT-CHVFVLSPFGG 465 (994)
Q Consensus 427 RG~t~----------------a~I~sIaFSpDg~~LAsgS~dGT-VhIw~I~~~gg 465 (994)
.|... .....++|||||++||.++.|.+ +.+|.+..++.
T Consensus 150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~ 205 (740)
T 4a5s_A 150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD 205 (740)
T ss_dssp CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS
T ss_pred CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC
Confidence 11111 01124899999999999988777 88998865543
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.74 E-value=2.3e-07 Score=100.03 Aligned_cols=98 Identities=8% Similarity=-0.038 Sum_probs=68.1
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC-CCCEEEEEEcCC-----CeEEEEeCCCCcccCCCCCCccccCCcc
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP-SGTLLVTASVYG-----NNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSP-dGtlLATAS~dG-----t~IrVwdi~p~~~~~~sG~~~~~~~~s~ 419 (994)
..+..|.+||+.+++.... ..+...+..++|+| +|+.|+.++..+ ..|.+|++.. +
T Consensus 165 ~~~~~l~~~d~~~g~~~~~-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-------~---------- 226 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVI-HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG-------S---------- 226 (396)
T ss_dssp CCCEEEEEEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS-------C----------
T ss_pred CCcceEEEEECCCCcEEee-ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC-------C----------
Confidence 3567899999998875543 35777899999999 899888777533 2477777632 1
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCC-----CeEEEEecCC
Q 001935 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSK-----GTCHVFVLSP 462 (994)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~d-----GTVhIw~I~~ 462 (994)
.+..+..+.....+..++|||||++|+.++.+ ++|++|++..
T Consensus 227 -~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 227 -NVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET 273 (396)
T ss_dssp -CCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred -ceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence 12223222112358889999999999888765 4588888754
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.69 E-value=2.5e-05 Score=83.01 Aligned_cols=106 Identities=7% Similarity=0.020 Sum_probs=65.8
Q ss_pred CCeEEEEEec-CcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCC
Q 001935 74 FKQVLLLGYQ-NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (994)
Q Consensus 74 ~~~vL~lGy~-~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~ 152 (994)
++++++++.. +++.+||.+ .+.+..+...+...+..+.+.|++ .|++. .... .
T Consensus 55 ~g~l~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~i~~~~dg-------------~l~v~-~~~~----~------- 108 (333)
T 2dg1_A 55 QGQLFLLDVFEGNIFKINPE-TKEIKRPFVSHKANPAAIKIHKDG-------------RLFVC-YLGD----F------- 108 (333)
T ss_dssp TSCEEEEETTTCEEEEECTT-TCCEEEEEECSSSSEEEEEECTTS-------------CEEEE-ECTT----S-------
T ss_pred CCCEEEEECCCCEEEEEeCC-CCcEEEEeeCCCCCcceEEECCCC-------------cEEEE-eCCC----C-------
Confidence 4567777765 459999984 466666554456778999888664 24443 2110 0
Q ss_pred ccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEe---CCCcEEEEEecC--CeEEEEeC-------CeEEEEECCC
Q 001935 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLR---FRSSVCMVRCSP--RIVAVGLA-------TQIYCFDALT 220 (994)
Q Consensus 153 ~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~---f~S~V~sV~~S~--~iLAVgl~-------~~I~IwDa~T 220 (994)
.....|.+||.++++....+. ....+.+|.+++ +++++... ..|+.||..+
T Consensus 109 -----------------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~ 171 (333)
T 2dg1_A 109 -----------------KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF 171 (333)
T ss_dssp -----------------SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred -----------------CCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC
Confidence 012579999999887654443 124688999987 35554442 3577777665
Q ss_pred Cc
Q 001935 221 LE 222 (994)
Q Consensus 221 le 222 (994)
.+
T Consensus 172 ~~ 173 (333)
T 2dg1_A 172 RT 173 (333)
T ss_dssp CC
T ss_pred CE
Confidence 44
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.60 E-value=1.2e-06 Score=102.58 Aligned_cols=97 Identities=13% Similarity=0.001 Sum_probs=60.4
Q ss_pred eEEEEECCCCcEEEEeccCCCC--------eEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceE
Q 001935 350 IVVVKDFVTRAIISQFKAHTSP--------ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH 421 (994)
Q Consensus 350 ~V~VwDl~s~~~i~~~~aHtsp--------IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~ 421 (994)
.|.+||+.+++....+..|... +..++|+|+|+++++++. |+ ++||.+... + ..
T Consensus 266 ~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~d~~------~----------~~ 327 (662)
T 3azo_A 266 NLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA-AVLGILDPE------S----------GE 327 (662)
T ss_dssp EEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS-CEEEEEETT------T----------TE
T ss_pred EEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc-cEEEEEECC------C----------Cc
Confidence 5666776666654444433322 567999999999999998 66 799965321 1 13
Q ss_pred EEEEecccccccEEEE-EEccCCCEEEEEeCCCeEEEEecCCCCCC
Q 001935 422 LYKLHRGITSATIQDI-CFSHYSQWIAIVSSKGTCHVFVLSPFGGD 466 (994)
Q Consensus 422 l~~L~RG~t~a~I~sI-aFSpDg~~LAsgS~dGTVhIw~I~~~gg~ 466 (994)
+..|..+ ...+..+ +++.+.-++++++.+....||.++..++.
T Consensus 328 ~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 328 LVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp EEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 4455322 3356666 55544445556677777788877665554
No 178
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.59 E-value=7.3e-06 Score=93.10 Aligned_cols=81 Identities=9% Similarity=0.117 Sum_probs=59.2
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceE--E
Q 001935 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVH--L 422 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~--l 422 (994)
...+|.|.+||+.++.... +...|+|+||||+| ++.+..+|+ |++|+... + .. .
T Consensus 142 ~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~-i~~~~~~~-------~----------~~~~k 197 (388)
T 1xip_A 142 LNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS-FQSFAWRN-------G----------EMEKQ 197 (388)
T ss_dssp EETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC-EEEEEEET-------T----------EEEEE
T ss_pred EECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc-EEEEcCCC-------c----------ccccc
Confidence 3578999999999887643 45689999999999 566777676 89997632 1 11 2
Q ss_pred EEEec----c---cccccEEEEEEccCCCEEEEE
Q 001935 423 YKLHR----G---ITSATIQDICFSHYSQWIAIV 449 (994)
Q Consensus 423 ~~L~R----G---~t~a~I~sIaFSpDg~~LAsg 449 (994)
.++-+ + .+...|.+|.|.++++||++=
T Consensus 198 ~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 198 FEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 33411 1 134679999999999999873
No 179
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.57 E-value=9e-06 Score=88.25 Aligned_cols=178 Identities=6% Similarity=-0.034 Sum_probs=116.1
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC-CeEEEEe--CCeEEEEECCCCceeEEEeecCCccccCCCccccccCccc
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGP 249 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~sV~~S~-~iLAVgl--~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gp 249 (994)
++|.+||.++++.+.++.....+..|++++ ..|.|+. ++.|++||+.+++...++...... + ...
T Consensus 64 ~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~-----~--~~~----- 131 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD-----M--ESG----- 131 (328)
T ss_dssp TEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC-----T--TTC-----
T ss_pred CEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc-----c--cCC-----
Confidence 689999999999999997666788888844 4555554 678999999998876666532200 0 000
Q ss_pred eEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCc
Q 001935 250 MAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPV 329 (994)
Q Consensus 250 lAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~ 329 (994)
.|.-|++.+ +.+ |.
T Consensus 132 ---~p~~i~~~~-----------------------------~~l----------------------yv------------ 145 (328)
T 3dsm_A 132 ---STEQMVQYG-----------------------------KYV----------------------YV------------ 145 (328)
T ss_dssp ---BCCCEEEET-----------------------------TEE----------------------EE------------
T ss_pred ---CcceEEEEC-----------------------------CEE----------------------EE------------
Confidence 011122211 000 00
Q ss_pred cCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC---------CCeEEEEeCC
Q 001935 330 SPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY---------GNNINIFRIM 400 (994)
Q Consensus 330 s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~d---------Gt~IrVwdi~ 400 (994)
+..+.++.|.++|+.+++++..+.....| ..|+|+|+|++++++..+ ...|.+||..
T Consensus 146 -------------~~~~~~~~v~viD~~t~~~~~~i~~g~~p-~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 146 -------------NCWSYQNRILKIDTETDKVVDELTIGIQP-TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp -------------EECTTCCEEEEEETTTTEEEEEEECSSCB-CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred -------------EcCCCCCEEEEEECCCCeEEEEEEcCCCc-cceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 01123678999999999988888765444 679999999988877643 1458888874
Q ss_pred CCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 401 PSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 401 p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
. + +.+..+.-. .......|+|+||+++|.++.. +|.+|++..
T Consensus 212 t-------~----------~v~~~~~~~-~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t 253 (328)
T 3dsm_A 212 T-------F----------TVEKQFKFK-LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEA 253 (328)
T ss_dssp T-------T----------EEEEEEECC-TTCCCEEEEECTTSCEEEEESS--SEEEEETTC
T ss_pred C-------C----------eEEEEEecC-CCCCceeEEEecCCCEEEEEcc--EEEEEECCC
Confidence 3 2 233333221 0124789999999999988765 788887654
No 180
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.56 E-value=5.1e-05 Score=81.08 Aligned_cols=229 Identities=9% Similarity=-0.000 Sum_probs=146.8
Q ss_pred CeEEEEEecCc-EEEEEccCCCcceEeeeecc-CCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCC
Q 001935 75 KQVLLLGYQNG-FQVLDVEDASNFNELVSKRD-GPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSH 152 (994)
Q Consensus 75 ~~vL~lGy~~G-~qVWDv~~~g~v~ells~hd-GpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~ 152 (994)
.++|+++..++ +++||.+ +|++.-.+..++ ..+..+.++|++ .+|+ +.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~-tG~~~w~~~~~~~~~~~~~~~~pdG-------------~ilv--s~-------------- 54 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKD-TKEIVWEYPLEKGWECNSVAATKAG-------------EILF--SY-------------- 54 (276)
T ss_dssp CEEEEECTTCSEEEEEETT-TTEEEEEEECCTTCCCCEEEECTTS-------------CEEE--EC--------------
T ss_pred CcEEEeeCCCCEEEEEECC-CCeEEEEeCCCccCCCcCeEECCCC-------------CEEE--eC--------------
Confidence 56777777665 8999974 577766666555 367888888865 2444 22
Q ss_pred ccccccCCcCCCCCCCCCCCCEEEEEECCCCeEEEEEeCC--CcEEEEEecC--CeEEEEeC--CeEEEEECCCCceeEE
Q 001935 153 LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFR--SSVCMVRCSP--RIVAVGLA--TQIYCFDALTLENKFS 226 (994)
Q Consensus 153 ~~~vr~g~~d~~~~~~~~sp~tVrLWDlktge~V~tL~f~--S~V~sV~~S~--~iLAVgl~--~~I~IwDa~Tle~l~t 226 (994)
.+.|..||. +|+.+..++.. ..+.++.+.+ ++|++... .+|++||. +++.+.+
T Consensus 55 -------------------~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~ 113 (276)
T 3no2_A 55 -------------------SKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSK 113 (276)
T ss_dssp -------------------BSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEE
T ss_pred -------------------CCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEE
Confidence 146999999 89999998875 3677777765 56666543 46888886 6666655
Q ss_pred EeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhh
Q 001935 227 VLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFA 306 (994)
Q Consensus 227 L~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la 306 (994)
+..... .. ++.. .++.+ ...+++..+
T Consensus 114 ~~~~~~----------~~---~~~~-~~~~v---------------------------~~~~~G~~l------------- 139 (276)
T 3no2_A 114 TEFETG----------IE---RPHA-QFRQI---------------------------NKNKKGNYL------------- 139 (276)
T ss_dssp EEECCS----------CS---SGGG-SCSCC---------------------------EECTTSCEE-------------
T ss_pred EeccCC----------CC---cccc-cccCc---------------------------eECCCCCEE-------------
Confidence 432100 00 0000 00000 001111111
Q ss_pred cccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEE
Q 001935 307 AGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVT 386 (994)
Q Consensus 307 ~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLAT 386 (994)
+....++.|.+||.. ++.+.++..+.. ..++.+.++|.+|++
T Consensus 140 ------------------------------------v~~~~~~~v~~~d~~-G~~~w~~~~~~~-~~~~~~~~~g~~~v~ 181 (276)
T 3no2_A 140 ------------------------------------VPLFATSEVREIAPN-GQLLNSVKLSGT-PFSSAFLDNGDCLVA 181 (276)
T ss_dssp ------------------------------------EEETTTTEEEEECTT-SCEEEEEECSSC-CCEEEECTTSCEEEE
T ss_pred ------------------------------------EEecCCCEEEEECCC-CCEEEEEECCCC-ccceeEcCCCCEEEE
Confidence 122457899999998 999999987644 456788999999998
Q ss_pred EEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc----cccccEEEEEEccCCCEEEEEeCC--------Ce
Q 001935 387 ASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG----ITSATIQDICFSHYSQWIAIVSSK--------GT 454 (994)
Q Consensus 387 AS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG----~t~a~I~sIaFSpDg~~LAsgS~d--------GT 454 (994)
++. +..|..||... | ..+.++.+. ..-..+..++..+||+.+++.+.- +.
T Consensus 182 ~~~-~~~v~~~d~~t-------G----------~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~ 243 (276)
T 3no2_A 182 CGD-AHCFVQLNLES-------N----------RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKH 243 (276)
T ss_dssp CBT-TSEEEEECTTT-------C----------CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCC
T ss_pred eCC-CCeEEEEeCcC-------C----------cEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCC
Confidence 776 44588888642 4 467777542 112348899999999998887521 35
Q ss_pred EEEEecCCCC
Q 001935 455 CHVFVLSPFG 464 (994)
Q Consensus 455 VhIw~I~~~g 464 (994)
.++|.+++.|
T Consensus 244 ~~~~~~~~~g 253 (276)
T 3no2_A 244 PQLVEIDSEG 253 (276)
T ss_dssp CSEEEECTTS
T ss_pred ceEEEECCCC
Confidence 5789987744
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.54 E-value=2.1e-05 Score=94.15 Aligned_cols=97 Identities=10% Similarity=-0.018 Sum_probs=66.8
Q ss_pred CCeEEEEECCCCc--EEEEeccCCC--CeEEEEECCCCCEEEEEEcCCCe-EEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 348 AGIVVVKDFVTRA--IISQFKAHTS--PISALCFDPSGTLLVTASVYGNN-INIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 348 dG~V~VwDl~s~~--~i~~~~aHts--pIsaLaFSPdGtlLATAS~dGt~-IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
.+.|.+||+.++. ....+.+|.. .|..++|++++.+++++..+|.. |.+|++.. | ..+
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-------g----------~~~ 372 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-------G----------ALL 372 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-------C----------CEE
T ss_pred CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-------C----------CEE
Confidence 4678899988764 2345556654 68889999899999999987752 55666532 3 244
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeC----CCeEEEEecCCC
Q 001935 423 YKLHRGITSATIQDICFSHYSQWIAIVSS----KGTCHVFVLSPF 463 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~LAsgS~----dGTVhIw~I~~~ 463 (994)
.++.. ....|..++|+||++.|+.+.. .+++.+|++...
T Consensus 373 ~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 373 KIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 55532 2456889999999987775433 367888887653
No 182
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.50 E-value=8.5e-05 Score=77.74 Aligned_cols=97 Identities=13% Similarity=0.148 Sum_probs=64.2
Q ss_pred CCeEEEEECC-CCc-----EEEEeccCC-CCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcce
Q 001935 348 AGIVVVKDFV-TRA-----IISQFKAHT-SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (994)
Q Consensus 348 dG~V~VwDl~-s~~-----~i~~~~aHt-spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~ 420 (994)
++.|.+||+. +++ ....+..+. .....|+|+++|+++++....+ .|.+|+... | .
T Consensus 197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~-~i~~~d~~~-------g----------~ 258 (314)
T 1pjx_A 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS-HIEVFGPDG-------G----------Q 258 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT-EEEEECTTC-------B----------S
T ss_pred CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC-EEEEEcCCC-------C----------c
Confidence 4567777765 332 334455554 5578899999999998876644 588998642 2 1
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEecCCCC
Q 001935 421 HLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPFG 464 (994)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS-~dGTVhIw~I~~~g 464 (994)
.+..+.- ....+.+++|++|+++|.+++ .++.|.+|++...|
T Consensus 259 ~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 259 PKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp CSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 1222221 224689999999999666554 56889999987643
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.46 E-value=0.00014 Score=86.24 Aligned_cols=237 Identities=13% Similarity=0.089 Sum_probs=141.5
Q ss_pred CeEEEEEecC-cEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCc
Q 001935 75 KQVLLLGYQN-GFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHL 153 (994)
Q Consensus 75 ~~vL~lGy~~-G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~ 153 (994)
..++++...+ .+.|||.+ ++++...+... ..+..+.++|++ .+|.+ ++.
T Consensus 167 ~~~~V~~~~~~~V~viD~~-t~~v~~~i~~g-~~p~~v~~SpDG-------------r~lyv-~~~-------------- 216 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGS-TYEIKTVLDTG-YAVHISRLSASG-------------RYLFV-IGR-------------- 216 (567)
T ss_dssp GEEEEEETTTTEEEEEETT-TCCEEEEEECS-SCEEEEEECTTS-------------CEEEE-EET--------------
T ss_pred ceEEEEeCCCCeEEEEECC-CCeEEEEEeCC-CCccceEECCCC-------------CEEEE-EcC--------------
Confidence 3455555444 49999985 46565555432 246688888876 24444 221
Q ss_pred cccccCCcCCCCCCCCCCCCEEEEEECC--CCeEEEEEeCCCcEEEEEec----C--CeEEEEe--CCeEEEEECCCCce
Q 001935 154 GGVRDGMMDSQSGNCVNSPTAVRFYSFQ--SHCYEHVLRFRSSVCMVRCS----P--RIVAVGL--ATQIYCFDALTLEN 223 (994)
Q Consensus 154 ~~vr~g~~d~~~~~~~~sp~tVrLWDlk--tge~V~tL~f~S~V~sV~~S----~--~iLAVgl--~~~I~IwDa~Tle~ 223 (994)
++.|.+||+. +++.+.++........|+++ + ++|+|+. .++|.+||..|++.
T Consensus 217 ------------------dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~ 278 (567)
T 1qks_A 217 ------------------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP 278 (567)
T ss_dssp ------------------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred ------------------CCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE
Confidence 2579999996 89999999877778899998 3 5666644 46899999999999
Q ss_pred eEEEeecCCccccCCCccccccCccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhh
Q 001935 224 KFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSK 303 (994)
Q Consensus 224 l~tL~t~p~p~~~~~g~~~vnv~~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk 303 (994)
+.++.+...+ ++ .....-.+|..+.. .|+++..+
T Consensus 279 ~~~i~~~~~~---------~~--~~~~~p~~rva~i~-------------------------~s~~~~~~---------- 312 (567)
T 1qks_A 279 KKIQSTRGMT---------YD--EQEYHPEPRVAAIL-------------------------ASHYRPEF---------- 312 (567)
T ss_dssp EEEEECCEEC---------TT--TCCEESCCCEEEEE-------------------------ECSSSSEE----------
T ss_pred EEEEeccccc---------cc--cccccCCCceEEEE-------------------------EcCCCCEE----------
Confidence 8877642110 00 00000000000000 00000000
Q ss_pred hhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCCcE--EEEeccCCCCeEEEEECCCC
Q 001935 304 QFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAI--ISQFKAHTSPISALCFDPSG 381 (994)
Q Consensus 304 ~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~--i~~~~aHtspIsaLaFSPdG 381 (994)
.......|.|.++|..+.+. +..+. .......+.|+|||
T Consensus 313 --------------------------------------vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdg 353 (567)
T 1qks_A 313 --------------------------------------IVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSH 353 (567)
T ss_dssp --------------------------------------EEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTS
T ss_pred --------------------------------------EEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCC
Confidence 01224578899999877542 23332 23345678999999
Q ss_pred CEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-cc--ccc-cEEEEEEccCCCEEEEEe--CCCeE
Q 001935 382 TLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-GI--TSA-TIQDICFSHYSQWIAIVS--SKGTC 455 (994)
Q Consensus 382 tlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R-G~--t~a-~I~sIaFSpDg~~LAsgS--~dGTV 455 (994)
++|+++......|.|+|+.. + +.+..+.- |. +.. .+. + |.||+..+.+.+ .+++|
T Consensus 354 r~~~va~~~sn~V~ViD~~t-------~----------kl~~~i~vgg~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~V 414 (567)
T 1qks_A 354 RYFITAANARNKLVVIDTKE-------G----------KLVAIEDTGGQTPHPGRGAN-F-VHPTFGPVWATSHMGDDSV 414 (567)
T ss_dssp CEEEEEEGGGTEEEEEETTT-------T----------EEEEEEECSSSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEE
T ss_pred CEEEEEeCCCCeEEEEECCC-------C----------cEEEEEeccCcCCCCcccee-e-ECCCCCcEEEeCCCCCCeE
Confidence 99988887677899999864 2 23333333 22 211 222 2 688866665544 46899
Q ss_pred EEEecCCC
Q 001935 456 HVFVLSPF 463 (994)
Q Consensus 456 hIw~I~~~ 463 (994)
.|++..+.
T Consensus 415 svid~~~~ 422 (567)
T 1qks_A 415 ALIGTDPE 422 (567)
T ss_dssp EEEECCTT
T ss_pred EEecCCCC
Confidence 99998873
No 184
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.45 E-value=8.1e-05 Score=77.51 Aligned_cols=93 Identities=11% Similarity=0.203 Sum_probs=66.7
Q ss_pred CCCeEEEEECCCCcEEEEec--cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 001935 347 NAGIVVVKDFVTRAIISQFK--AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~--aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~ 424 (994)
.++.|.+||.. ++.+..+. .+...+..|+|+|+|+++++.+. +..|++|+.. | ..+..
T Consensus 140 ~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-~~~i~~~~~~--------g----------~~~~~ 199 (286)
T 1q7f_A 140 KVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-AHCVKVFNYE--------G----------QYLRQ 199 (286)
T ss_dssp TTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG-GTEEEEEETT--------C----------CEEEE
T ss_pred CCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC-CCEEEEEcCC--------C----------CEEEE
Confidence 35678888854 45555554 45567899999999998887665 4569999963 3 24444
Q ss_pred Eec-ccccccEEEEEEccCCCEEEEEeCCC-eEEEEec
Q 001935 425 LHR-GITSATIQDICFSHYSQWIAIVSSKG-TCHVFVL 460 (994)
Q Consensus 425 L~R-G~t~a~I~sIaFSpDg~~LAsgS~dG-TVhIw~I 460 (994)
+.. |. ...+..|+|++||+.+++...++ +|++|+.
T Consensus 200 ~~~~g~-~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 200 IGGEGI-TNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp ESCTTT-SCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred EccCCc-cCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 421 21 13588999999999888888876 9999983
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.37 E-value=0.00017 Score=76.52 Aligned_cols=101 Identities=13% Similarity=0.151 Sum_probs=60.4
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
.+.|..+|..+++.. .+..+...+..++|+|||+.|..+...+..|.+|++... |...... .......+ .
T Consensus 161 ~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~------g~~~~~~--~~~~~~~~-~ 230 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD------GVTIQPF--GATIPYYF-T 230 (333)
T ss_dssp CEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT------SSSEEEE--EEEEEEEC-C
T ss_pred CceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC------CcCcccc--cceEEEec-C
Confidence 345666666554433 233333457889999999966555543456999998431 2100000 00001111 1
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I 460 (994)
+ ...+..|+|++||+.+++...++.|.+|+.
T Consensus 231 ~--~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 231 G--HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp S--SSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred C--CCCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 1 135788999999998888888899999975
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.35 E-value=5.6e-05 Score=77.49 Aligned_cols=96 Identities=9% Similarity=-0.029 Sum_probs=66.9
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
++.|.+||............+...+..|+++++|+++++....+ .|.+|+.... ........
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~-~v~~~~~~~~-----------------~~~~~~~~ 231 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTN-QVVKLLAGST-----------------TSTVLPFT 231 (270)
T ss_dssp GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTS-CEEEECTTCS-----------------CCEECCCC
T ss_pred CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCC-cEEEEcCCCC-----------------cceeeccC
Confidence 45778888777665444444546788999999998887766544 4889986421 11111111
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
+ ...+.+|+|++||+.+++.+.+++|++|++...
T Consensus 232 ~--~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 232 G--LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp S--CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred C--CCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 2 135899999999998889999999999998653
No 187
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=98.34 E-value=0.00017 Score=77.79 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=44.5
Q ss_pred CCCeEEEEECCCCcEEEEe---ccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCC
Q 001935 347 NAGIVVVKDFVTRAIISQF---KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~---~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (994)
.+..|.+||+.+++.+..+ .+|......|+|+|+|.++++...++ .|++|++.
T Consensus 266 ~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~-~I~~~~~~ 321 (329)
T 3fvz_A 266 EPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN-TVWKFTLT 321 (329)
T ss_dssp CCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC-CEEEEEEE
T ss_pred CCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC-EEEEEeCC
Confidence 4668999999999999888 47888899999999998888777644 59999974
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.29 E-value=8.8e-05 Score=87.95 Aligned_cols=182 Identities=10% Similarity=-0.017 Sum_probs=121.7
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe-CCeEEEEECC--CCceeEEEeecCCccccCCCccccccC
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-ATQIYCFDAL--TLENKFSVLTYPVPQLAGQGAVGINVG 246 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVgl-~~~I~IwDa~--Tle~l~tL~t~p~p~~~~~g~~~vnv~ 246 (994)
.++|.+||..+++.+.++.....+..+.+++ ++|.|+. ++.|.+||+. +++.+.++....
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~--------------- 240 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--------------- 240 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---------------
T ss_pred CCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---------------
Confidence 3689999999999999998877888999987 5666655 5589999996 777766654311
Q ss_pred ccceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCC
Q 001935 247 YGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSS 326 (994)
Q Consensus 247 ~gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~ 326 (994)
.|+.++++... .|++..+.+
T Consensus 241 ------~P~~ia~s~~~-----------------------~pDGk~l~v------------------------------- 260 (567)
T 1qks_A 241 ------EARSIETSKME-----------------------GWEDKYAIA------------------------------- 260 (567)
T ss_dssp ------EEEEEEECCST-----------------------TCTTTEEEE-------------------------------
T ss_pred ------CCceeEEcccc-----------------------CCCCCEEEE-------------------------------
Confidence 12334443100 012111110
Q ss_pred CCccCCCccccccccccccCCCCeEEEEECCCCcEEEEecc----------CCC-CeEEEEECCCCCEEEEEEcCCCeEE
Q 001935 327 SPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKA----------HTS-PISALCFDPSGTLLVTASVYGNNIN 395 (994)
Q Consensus 327 s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~a----------Hts-pIsaLaFSPdGtlLATAS~dGt~Ir 395 (994)
....++.|.|+|..+++++..+.. |.. .+.++.+++++..++..-.+...|.
T Consensus 261 -----------------~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~ 323 (567)
T 1qks_A 261 -----------------GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 323 (567)
T ss_dssp -----------------EEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred -----------------EEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence 112357889999999988877753 223 5889999999887666666556688
Q ss_pred EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe-CCCeEEEEecCCC
Q 001935 396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF 463 (994)
Q Consensus 396 Vwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS-~dGTVhIw~I~~~ 463 (994)
++|..+. . ...+.++..| ....++.|+||+++|.++. .+++|.|+++...
T Consensus 324 ~vd~~~~------~---------~~~v~~i~~~---~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 324 LVDYTDL------N---------NLKTTEISAE---RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp EEETTCS------S---------EEEEEEEECC---SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred EEecCCC------c---------cceeeeeecc---ccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 8887531 0 0122233222 2467899999999987766 5789999998754
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.26 E-value=4.7e-05 Score=81.38 Aligned_cols=171 Identities=9% Similarity=0.061 Sum_probs=110.9
Q ss_pred CCEEEEEECCCCeEEEEEeCCC--cEEEEEecC--CeEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCc
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--RIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGY 247 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S--~V~sV~~S~--~iLAVgl~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~ 247 (994)
++.|.+||.++|+.+.++..+. .+.++.+.+ ++|+ +.++.|++||. +++.+..+...... . .
T Consensus 14 ~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~----------~--~ 79 (276)
T 3no2_A 14 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGC----------E--M 79 (276)
T ss_dssp CSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTC----------E--E
T ss_pred CCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCc----------c--c
Confidence 3789999999999999998764 678888876 5666 67788999999 88888777642110 0 0
Q ss_pred cceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCC
Q 001935 248 GPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSS 327 (994)
Q Consensus 248 gplAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s 327 (994)
..++ ..+++..+++
T Consensus 80 ~~~~----------------------------------~~~dG~~lv~-------------------------------- 93 (276)
T 3no2_A 80 QTAR----------------------------------ILPDGNALVA-------------------------------- 93 (276)
T ss_dssp EEEE----------------------------------ECTTSCEEEE--------------------------------
T ss_pred cccE----------------------------------ECCCCCEEEE--------------------------------
Confidence 0000 0112222221
Q ss_pred CccCCCccccccccccccCCCCeEEEEECCCCcEEEEec------cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCC
Q 001935 328 PVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFK------AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMP 401 (994)
Q Consensus 328 ~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~------aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p 401 (994)
.....+.|..+|. +++.+..+. .+..+...+++.++|++|++.+.++ .|.+||..
T Consensus 94 ----------------~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~-~v~~~d~~- 154 (276)
T 3no2_A 94 ----------------WCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS-EVREIAPN- 154 (276)
T ss_dssp ----------------EESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT-EEEEECTT-
T ss_pred ----------------ecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC-EEEEECCC-
Confidence 0111334444554 344444443 2223455678999999999888755 58899963
Q ss_pred CcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 402 SCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 402 ~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
| +.+.++.++ ..+.++.+.++|+.|++++.++.|..|+..
T Consensus 155 -------G----------~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 155 -------G----------QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp -------S----------CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred -------C----------CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 4 467777654 245678899999999999988887776644
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.26 E-value=9.7e-05 Score=88.37 Aligned_cols=99 Identities=4% Similarity=-0.099 Sum_probs=66.9
Q ss_pred CCeEEEEECCC------Cc-EEEEeccCCCCeEEEEECCCCCEEEEEEcCCC---eEEEEeCCCCcccCCCCCCccccCC
Q 001935 348 AGIVVVKDFVT------RA-IISQFKAHTSPISALCFDPSGTLLVTASVYGN---NINIFRIMPSCMRSGSGNHKYDWNS 417 (994)
Q Consensus 348 dG~V~VwDl~s------~~-~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt---~IrVwdi~p~~~~~~sG~~~~~~~~ 417 (994)
+..|.+||+.+ +. .+..|..|...+.. .|+|+|+.|+..+.++. .|.+|++.. +.
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~-------~~------- 322 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTD-------PE------- 322 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTS-------CC-------
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCC-------CC-------
Confidence 56788999876 43 45667777777665 58999998887776443 477788742 10
Q ss_pred cceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 418 SHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 418 s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
......|........|.+++|++++..+++...+++.+||.++.
T Consensus 323 -~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 323 -ESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp -GGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred -cccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence 00112332322224688999998888899999999887777665
No 191
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.25 E-value=1.3e-05 Score=85.34 Aligned_cols=82 Identities=7% Similarity=0.097 Sum_probs=54.5
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-------CeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 350 ~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dG-------t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
.|.++| +++ +..+..| ..+..+ +|||++||.++.++ ..|.+|+ . | ..
T Consensus 201 ~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-------~-----------~~ 254 (347)
T 2gop_A 201 DIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-------K-----------EV 254 (347)
T ss_dssp EEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-------S-----------CE
T ss_pred cEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-------C-----------ce
Confidence 455555 444 4455555 556554 99999998888543 2466666 2 2 12
Q ss_pred EEEecccccccEEE-EEEccCCCEEEEEeCCCeEEEEecC
Q 001935 423 YKLHRGITSATIQD-ICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 423 ~~L~RG~t~a~I~s-IaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
..+..+. ...|.+ ++|+ |+ .+++++.+++++|| +.
T Consensus 255 ~~l~~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 255 MGILDEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp EESSTTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred EeccccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 2333332 345776 9999 99 99999999999999 88
No 192
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.24 E-value=0.00028 Score=78.88 Aligned_cols=98 Identities=9% Similarity=0.083 Sum_probs=64.9
Q ss_pred CCCeEEEEECCCCc--EEEEeccC----------CCCeEEEEECCCCCEEEEEEcC---------CCeEEEEeCCCCccc
Q 001935 347 NAGIVVVKDFVTRA--IISQFKAH----------TSPISALCFDPSGTLLVTASVY---------GNNINIFRIMPSCMR 405 (994)
Q Consensus 347 ~dG~V~VwDl~s~~--~i~~~~aH----------tspIsaLaFSPdGtlLATAS~d---------Gt~IrVwdi~p~~~~ 405 (994)
..|.|.+.|+.+.. .+..+.-. ......++|+|||+.|..+... +..|.|+|+..
T Consensus 232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t---- 307 (373)
T 2mad_H 232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV---- 307 (373)
T ss_pred CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC----
Confidence 45788888987542 33333211 1224458899999988776542 24588888753
Q ss_pred CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEEe-CCCeEEEEecCCCC
Q 001935 406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIVS-SKGTCHVFVLSPFG 464 (994)
Q Consensus 406 ~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~-~LAsgS-~dGTVhIw~I~~~g 464 (994)
+ +.+.++.-| ...+.|+|+|||+ .|.++. .+++|.||++...+
T Consensus 308 ---~----------~vv~~i~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 308 ---G----------QTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred ---C----------EEEEEEECC---CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 2 344555433 2468999999999 666666 48999999987654
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.19 E-value=2.5e-05 Score=93.31 Aligned_cols=97 Identities=8% Similarity=-0.083 Sum_probs=66.0
Q ss_pred CCCeEEEEECCCCcE--EEEeccC--CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 347 NAGIVVVKDFVTRAI--ISQFKAH--TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~--i~~~~aH--tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
.++.|.+||+.+++. ...+..| ...|..++|+ ++.++++...+|. .+||.+... | ..+
T Consensus 293 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~------g----------~~~ 354 (695)
T 2bkl_A 293 PRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVATLK------G----------KPV 354 (695)
T ss_dssp TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEEETT------C----------CEE
T ss_pred CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC------C----------Cee
Confidence 468899999988753 2334443 4568889998 7888999888665 788876421 2 234
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeC----CCeEEEEecCC
Q 001935 423 YKLHRGITSATIQDICFSHYSQWIAIVSS----KGTCHVFVLSP 462 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~LAsgS~----dGTVhIw~I~~ 462 (994)
.++. ......|..++|+||++.|+.... .++|.+|++..
T Consensus 355 ~~l~-~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 355 RTVQ-LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp EECC-CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred EEec-CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 4442 222456888999999988874433 36799999865
No 194
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.18 E-value=0.00024 Score=78.37 Aligned_cols=222 Identities=11% Similarity=0.047 Sum_probs=126.2
Q ss_pred CCEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEeecCCccccCC
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLTYPVPQLAGQ 238 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVgl-----------~~~I~IwDa~Tle~l~tL~t~p~p~~~~~ 238 (994)
+++|.+||..+++.+.++...... .|++++ ++|.++. ++.|.+||+.+++.+.++...+... .
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~---~ 105 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV---Q 105 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC---C
T ss_pred cCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc---c
Confidence 468999999999999888765444 889987 5777764 3469999999999888887532210 0
Q ss_pred CccccccCccceEEcc--cEEEEcc----CCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEE-eehhhhhhhhcccce
Q 001935 239 GAVGINVGYGPMAVGP--RWLAYAS----NTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVAR-YAMEHSKQFAAGLSK 311 (994)
Q Consensus 239 g~~~vnv~~gplAlgp--RwLAyas----~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~-~A~dssk~la~Gi~k 311 (994)
.+. ...-+++++ ++|..+. +.+.+|+.. .+.++.. +. + .+.
T Consensus 106 --~g~--~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~-------------------~~~~~~~~i~------~-~~~-- 153 (361)
T 2oiz_A 106 --GLN--YDGLFRQTTDGKFIVLQNASPATSIGIVDVA-------------------KGDYVEDVTA------A-AGC-- 153 (361)
T ss_dssp --BCC--CGGGEEECTTSSEEEEEEESSSEEEEEEETT-------------------TTEEEEEEGG------G-TTE--
T ss_pred --cCC--CcceEEECCCCCEEEEECCCCCCeEEEEECC-------------------CCcEEEEEec------C-CCc--
Confidence 000 123477876 6665432 234455421 0111110 00 0 000
Q ss_pred eeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCC-CcEE------EEeccCCCCeEEEEECCCCCEE
Q 001935 312 TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT-RAII------SQFKAHTSPISALCFDPSGTLL 384 (994)
Q Consensus 312 tlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s-~~~i------~~~~aHtspIsaLaFSPdGtlL 384 (994)
+--.+.|.+ . ..++....||.+.+|++.. ++.. ..|..+..|+ .+.++|+|..+
T Consensus 154 ----~~v~~~p~~-----------~---~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~ 214 (361)
T 2oiz_A 154 ----WSVIPQPNR-----------P---RSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKA 214 (361)
T ss_dssp ----EEEEECTTS-----------S---SEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEE
T ss_pred ----ceeEEcCCC-----------C---eeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEE
Confidence 000011111 0 0123456789999999875 5554 2344555565 45668889888
Q ss_pred EEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe--c------ccccccEEEEEEccCCCEEEEEeC-----
Q 001935 385 VTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH--R------GITSATIQDICFSHYSQWIAIVSS----- 451 (994)
Q Consensus 385 ATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~--R------G~t~a~I~sIaFSpDg~~LAsgS~----- 451 (994)
+..+.+| .+.++|+... . ...+..+. . +......+-++|+||+++|.++..
T Consensus 215 ~~~~~~~-~v~v~d~~~~------~---------~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~ 278 (361)
T 2oiz_A 215 HFVSYYG-NVYSADFSGD------E---------VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE 278 (361)
T ss_dssp EEEBTTS-EEEEEECSSS------S---------CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred EEEeCCC-eEEEEEecCC------C---------ceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence 8888755 5899998531 1 01111111 0 000111123799999998887654
Q ss_pred ------CCeEEEEecCCCC
Q 001935 452 ------KGTCHVFVLSPFG 464 (994)
Q Consensus 452 ------dGTVhIw~I~~~g 464 (994)
.++|.+|++...+
T Consensus 279 ~~~~~~~~~v~viD~~t~~ 297 (361)
T 2oiz_A 279 GTHKFPAAEIWVMDTKTKQ 297 (361)
T ss_dssp TCTTCCCSEEEEEETTTTE
T ss_pred ccccCCCceEEEEECCCCc
Confidence 3478888877643
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.16 E-value=0.00073 Score=76.75 Aligned_cols=99 Identities=10% Similarity=0.094 Sum_probs=66.7
Q ss_pred CCCCeEEEEECCCCc--EEEEec--------c--CCCCeEEEEECCCCCEEEEEEcC---------CCeEEEEeCCCCcc
Q 001935 346 DNAGIVVVKDFVTRA--IISQFK--------A--HTSPISALCFDPSGTLLVTASVY---------GNNINIFRIMPSCM 404 (994)
Q Consensus 346 s~dG~V~VwDl~s~~--~i~~~~--------a--HtspIsaLaFSPdGtlLATAS~d---------Gt~IrVwdi~p~~~ 404 (994)
...|.|.+.|+.+.. ++..+. . +...+..++++|+|+.|..+..+ ++.|-|+|+..
T Consensus 244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t--- 320 (386)
T 3sjl_D 244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT--- 320 (386)
T ss_dssp BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT---
T ss_pred eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC---
Confidence 447899999997653 333332 0 11234468889999998887531 35677888753
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCC-EEEEE-eCCCeEEEEecCCCC
Q 001935 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQ-WIAIV-SSKGTCHVFVLSPFG 464 (994)
Q Consensus 405 ~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~-~LAsg-S~dGTVhIw~I~~~g 464 (994)
+ +.+.++.-| ..+++|+||+|++ +|.++ ..+++|.|++....+
T Consensus 321 ----~----------kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 321 ----G----------ERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp ----C----------CEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ----C----------eEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 2 345555433 3588999999997 56554 458999999987654
No 196
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.12 E-value=0.0013 Score=68.99 Aligned_cols=92 Identities=16% Similarity=0.102 Sum_probs=59.2
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcc-eEEEEEec
Q 001935 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH-VHLYKLHR 427 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~-~~l~~L~R 427 (994)
+.|..+|.. ++ +..+..+......|+|+|||++|++.+. +..|.+|++... |. . .....+ .
T Consensus 153 ~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~-~~~i~~~~~~~~------g~--------~~~~~~~~-~ 214 (296)
T 3e5z_A 153 RWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTG-DNATHRYCLNAR------GE--------TEYQGVHF-T 214 (296)
T ss_dssp CEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETT-TTEEEEEEECSS------SC--------EEEEEEEE-C
T ss_pred cEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCC-CCeEEEEEECCC------Cc--------CcCCCeEe-e
Confidence 455555554 33 3445566677789999999999955544 556999998521 21 1 011222 2
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
. ....+..|+|++||+.+++. ++.|.+|+..
T Consensus 215 ~-~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 215 V-EPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp C-SSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred C-CCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 1 23346789999999866655 8889999853
No 197
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.10 E-value=0.00057 Score=78.47 Aligned_cols=107 Identities=10% Similarity=-0.058 Sum_probs=69.3
Q ss_pred CcEEEEEccCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCCcCC
Q 001935 84 NGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDS 163 (994)
Q Consensus 84 ~G~qVWDv~~~g~v~ells~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~~~~~q~~~~~~~vr~g~~d~ 163 (994)
+.+.|+|.. +.++...+.....| .+.+.|++. .|.|...... . ..+ |.
T Consensus 99 ~~VsVID~~-t~~vv~~I~vG~~P--gia~SpDgk-------------~lyVan~~~~-~-----------~~~-G~--- 146 (426)
T 3c75_H 99 TQQFVIDGS-TGRILGMTDGGFLP--HPVAAEDGS-------------FFAQASTVFE-R-----------IAR-GK--- 146 (426)
T ss_dssp EEEEEEETT-TTEEEEEEEECSSC--EEEECTTSS-------------CEEEEEEEEE-E-----------TTE-EE---
T ss_pred CeEEEEECC-CCEEEEEEECCCCC--ceEECCCCC-------------EEEEEecccc-c-----------ccc-CC---
Confidence 469999985 56666666555567 688888762 2343221000 0 000 00
Q ss_pred CCCCCCCCCCEEEEEECCCCeEEEEEeCC--------CcEEEEEecC--CeEEEEe---CCeEEEEECCCCceeEEEee
Q 001935 164 QSGNCVNSPTAVRFYSFQSHCYEHVLRFR--------SSVCMVRCSP--RIVAVGL---ATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 164 ~~~~~~~sp~tVrLWDlktge~V~tL~f~--------S~V~sV~~S~--~iLAVgl---~~~I~IwDa~Tle~l~tL~t 229 (994)
-.+.|.++|.++++.+.++... .....+.+++ ++|.|+. .+.|.++|+.+++.+.++..
T Consensus 147 -------~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v 218 (426)
T 3c75_H 147 -------RTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV 218 (426)
T ss_dssp -------EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred -------CCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence 0257999999999999998764 2345677776 6777764 35799999999998877653
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.09 E-value=0.00028 Score=85.10 Aligned_cols=96 Identities=6% Similarity=-0.041 Sum_probs=63.7
Q ss_pred CCeEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 348 AGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 348 dG~V~VwDl~s~--~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
.+.|.+||+.++ +....+..|...|..++|+ ++.+++++..+|. .+||.+... | ..+..+
T Consensus 340 ~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~------g----------~~~~~l 401 (741)
T 1yr2_A 340 LKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAFDLD------G----------KPAGAV 401 (741)
T ss_dssp TCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEEETT------S----------CEEEEC
T ss_pred CCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCC------C----------Cceeec
Confidence 567889998874 3444455566667788888 7778888888665 677765321 2 234444
Q ss_pred ecccccccEEEEEEccCCCEEEEEeC----CCeEEEEecCC
Q 001935 426 HRGITSATIQDICFSHYSQWIAIVSS----KGTCHVFVLSP 462 (994)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~LAsgS~----dGTVhIw~I~~ 462 (994)
.- .....|..++|+||++.|+.... .+++.+|++..
T Consensus 402 ~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 402 SL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp BC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred cC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 31 12356899999999987774432 36788888754
No 199
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.08 E-value=0.0013 Score=76.31 Aligned_cols=81 Identities=12% Similarity=0.047 Sum_probs=56.1
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccc---------c---ccEEEEE
Q 001935 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGIT---------S---ATIQDIC 438 (994)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t---------~---a~I~sIa 438 (994)
..+.|.+||||++|..+-.....|.||++... + ..+.+.++.-|-. . ..-+.++
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~------~--------~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~ 387 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNP------F--------KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLE 387 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECSST------T--------SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEE
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEecCC------C--------CcEEEEEEEeCCeeccccccccccCCCCCCEEE
Confidence 46789999999999988887678999998521 1 1134444443310 0 0247899
Q ss_pred EccCCCEEEEEe------------CCCeEEEE--ecCCCCC
Q 001935 439 FSHYSQWIAIVS------------SKGTCHVF--VLSPFGG 465 (994)
Q Consensus 439 FSpDg~~LAsgS------------~dGTVhIw--~I~~~gg 465 (994)
+||||++|.++. .+..++++ ++++.+|
T Consensus 388 lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G 428 (462)
T 2ece_A 388 ISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG 428 (462)
T ss_dssp ECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC
T ss_pred EcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC
Confidence 999999999998 33445565 6687766
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.06 E-value=0.011 Score=60.66 Aligned_cols=92 Identities=11% Similarity=0.032 Sum_probs=61.1
Q ss_pred CCeEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 348 AGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~-~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
.+.|.+||. +++.... +..+...+..|+++++|+++++... +..|.+|+. . |. ...+.+.
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~~~-~-------g~---------~~~~~~~ 221 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII-GNKIGRITT-S-------GE---------ITEFKIP 221 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT-TTEEEEECT-T-------CC---------EEEEECS
T ss_pred CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC-CceEEEECC-C-------Cc---------EEEEECC
Confidence 456777777 5544332 3344566889999999998876654 445888886 2 31 1222222
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I 460 (994)
. ....+.+|++++||+..++...++.|.+|+.
T Consensus 222 ~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 222 T--PNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp S--TTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred C--CCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 1 2346899999999996666667889999886
No 201
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.04 E-value=0.0065 Score=65.64 Aligned_cols=85 Identities=8% Similarity=0.087 Sum_probs=53.2
Q ss_pred CCeEEEEECC--CC-c-----EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcc
Q 001935 348 AGIVVVKDFV--TR-A-----IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (994)
Q Consensus 348 dG~V~VwDl~--s~-~-----~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~ 419 (994)
.+.|.+||+. ++ . .+..+..+......++++++|.++++... +..|.+|+.. |
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~-~~~v~~~d~~--------g---------- 260 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG-EGAVDRYDTD--------G---------- 260 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET-TTEEEEECTT--------C----------
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC-CCEEEEECCC--------C----------
Confidence 3456666653 33 1 23334334445678999999998887655 3458888852 3
Q ss_pred eEEEEEecccccccEEEEEEc-cCCCEEEEEeCCC
Q 001935 420 VHLYKLHRGITSATIQDICFS-HYSQWIAIVSSKG 453 (994)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFS-pDg~~LAsgS~dG 453 (994)
..+..+.- ....+.+++|+ +|++.|.+++.++
T Consensus 261 ~~~~~i~~--~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 261 NHIARYEV--PGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp CEEEEEEC--SCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred CEEEEEEC--CCCCcEEEEEecCCCCEEEEEecCC
Confidence 23444432 22369999999 9999887776654
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.01 E-value=0.0043 Score=65.80 Aligned_cols=86 Identities=15% Similarity=0.245 Sum_probs=56.1
Q ss_pred CCeEEEEEC--CCCc-----EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcce
Q 001935 348 AGIVVVKDF--VTRA-----IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (994)
Q Consensus 348 dG~V~VwDl--~s~~-----~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~ 420 (994)
.+.|.+||+ .++. .+..+..+......|+++++|++.++... +..|.+|+... | +
T Consensus 170 ~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~-~~~v~~~d~~t-------G----------~ 231 (297)
T 3g4e_A 170 SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN-GGRVIRLDPVT-------G----------K 231 (297)
T ss_dssp GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET-TTEEEEECTTT-------C----------C
T ss_pred CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC-CCEEEEEcCCC-------c----------e
Confidence 345666665 2332 23344444456788999999998887665 55588888642 3 3
Q ss_pred EEEEEecccccccEEEEEEc-cCCCEEEEEeCCC
Q 001935 421 HLYKLHRGITSATIQDICFS-HYSQWIAIVSSKG 453 (994)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFS-pDg~~LAsgS~dG 453 (994)
.+.++.-. ...+.+++|+ ||++.|.+++.+.
T Consensus 232 ~~~~i~~p--~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 232 RLQTVKLP--VDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEEEEECS--SSBEEEEEEESGGGCEEEEEEBCT
T ss_pred EEEEEECC--CCCceEEEEeCCCCCEEEEEcCCc
Confidence 55555322 2468999999 9999888877653
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.00 E-value=0.0029 Score=71.41 Aligned_cols=73 Identities=12% Similarity=0.209 Sum_probs=50.1
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-----cc--------ccccEEEE
Q 001935 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-----GI--------TSATIQDI 437 (994)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R-----G~--------t~a~I~sI 437 (994)
....|+|+|+|+++++-+..++.|++|++.. | .+..+.. |. .-...+.|
T Consensus 324 ~P~gia~d~dG~lyvad~~~~~~I~~~~~~~-------G-----------~v~~~~g~~~~~g~~~g~~~~~~~~~P~gi 385 (409)
T 3hrp_A 324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILD-------G-----------YVSTVAGQVDVASQIDGTPLEATFNYPYDI 385 (409)
T ss_dssp SEEEEEECTTCCEEEEETTTTCEEEEEETTT-------T-----------EEEEEEECTTCBSCCCBSTTTCCBSSEEEE
T ss_pred CCeEEEEeCCCCEEEEeCCCCCEEEEEECCC-------C-----------EEEEEeCCCCCCCcCCCChhceEeCCceEE
Confidence 4578999999996665440477799999632 3 2222211 10 01248899
Q ss_pred EEccCCCEEEEEeCCCeEEEEecC
Q 001935 438 CFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 438 aFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
+|++|+..+++-...+.|+.+.++
T Consensus 386 avd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 386 CYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EECSSSEEEEEESTTCEEEEEEEC
T ss_pred EEcCCCCEEEEECCCCeEEEEEeC
Confidence 999999888888888999888763
No 204
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.94 E-value=0.00042 Score=77.96 Aligned_cols=250 Identities=10% Similarity=-0.033 Sum_probs=127.5
Q ss_pred EEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEeecCCccccCCCc
Q 001935 174 AVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLTYPVPQLAGQGA 240 (994)
Q Consensus 174 tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVgl-----------~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~ 240 (994)
+|.++|..+++.+.++.....- .+.+++ +.|.|+. ++.|.+||+.+++.+.++.....+. . .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~---~-~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR---F-S 121 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS---C-C
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc---c-c
Confidence 8999999999999999754323 788887 5677764 4679999999999998886431100 0 0
Q ss_pred cccccCccceEEcc--cEEEEc----cCCeee--ccCCccCCCcCCCCC----------CCCCcCCCCCceEEEeehhhh
Q 001935 241 VGINVGYGPMAVGP--RWLAYA----SNTLLL--SNSGRLSPQNLTPSG----------VSPSTSPGGSSLVARYAMEHS 302 (994)
Q Consensus 241 ~~vnv~~gplAlgp--RwLAya----s~~~~i--wd~G~~s~qsltp~~----------~S~stSp~~gsLVa~~A~dss 302 (994)
.+. ...-+++++ +||..+ ++.+.+ +|...+ ..+.-+. .-...++++..++..+. ..
T Consensus 122 ~g~--~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv--~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~--~~ 195 (368)
T 1mda_H 122 VGP--RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD--QLTKSASCFHIHPGAAATHYLGSCPASLAASDLA--AA 195 (368)
T ss_dssp BSC--CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEE--EEEECSSCCCCEEEETTEEECCCCTTSCEEEECC--SS
T ss_pred cCC--CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhc--eEEECCCceEEccCCCeEEEEEcCCCCEEEEECc--cc
Confidence 000 113478887 666543 233555 664110 0010000 00112223222221111 00
Q ss_pred hhhhcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCCC--cEEEEecc-------CC---C
Q 001935 303 KQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTR--AIISQFKA-------HT---S 370 (994)
Q Consensus 303 k~la~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~--~~i~~~~a-------Ht---s 370 (994)
. .+.|. +........+.+. .|.. .+... . ...... +.|.+.|+.+. +.+..+.. +. .
T Consensus 196 ~-~~~~~---v~~~~t~~i~vg~-~P~~-~~~~~--~--~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~ 264 (368)
T 1mda_H 196 P-AAAGI---VGAQCTGAQNCSS-QAAQ-ANYPG--M--LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSA 264 (368)
T ss_dssp C-CCCEE---CCCCSCTTSCBCS-CCEE-ETTTT--E--EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC
T ss_pred c-ccCCe---EEEEeeeeeeCCC-Cccc-cccCC--E--EEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccC
Confidence 0 00000 0000000011000 0110 00000 0 111223 88999998653 23333321 10 1
Q ss_pred CeEEEEECCCCCEEEEEEc-C-C------CeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccC
Q 001935 371 PISALCFDPSGTLLVTASV-Y-G------NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHY 442 (994)
Q Consensus 371 pIsaLaFSPdGtlLATAS~-d-G------t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpD 442 (994)
....++|+|||+.|..+.. . + ..+.|||+.. + +.+.++.-| ...+.|+|+||
T Consensus 265 g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-------~----------~vv~~i~vg---~~p~gi~~s~D 324 (368)
T 1mda_H 265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-------G----------QTSGPISNG---HDSDAIIAAQD 324 (368)
T ss_dssp SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-------C----------CEEECCEEE---EEECEEEECCS
T ss_pred cceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-------C----------eEEEEEECC---CCcceEEECCC
Confidence 1122689999998886644 2 2 2355999864 2 344444333 24789999999
Q ss_pred CCEEEEEe--CCCeEEEEecCCCCC
Q 001935 443 SQWIAIVS--SKGTCHVFVLSPFGG 465 (994)
Q Consensus 443 g~~LAsgS--~dGTVhIw~I~~~gg 465 (994)
|++++++. .+++|.|+++...+-
T Consensus 325 g~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 325 GASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp SSCEEEEEETTTTEEEEEESSSCEE
T ss_pred CCEEEEEccCCCCeEEEEECCCCcE
Confidence 98655544 489999999987643
No 205
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.85 E-value=0.0016 Score=70.85 Aligned_cols=57 Identities=9% Similarity=-0.038 Sum_probs=42.1
Q ss_pred CEEEEEECCCCeEEEEEeCCC-------cEEEEEecC--CeEEEE-----eCCeEEEEECCCCceeEEEee
Q 001935 173 TAVRFYSFQSHCYEHVLRFRS-------SVCMVRCSP--RIVAVG-----LATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S-------~V~sV~~S~--~iLAVg-----l~~~I~IwDa~Tle~l~tL~t 229 (994)
.+|.+||+++++.++++.++. .+.+|++++ ..+.++ ....|++||+.+.+....+..
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~ 163 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQG 163 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence 589999999999999988752 357888874 455554 346899999988876555433
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=97.83 E-value=0.0016 Score=78.37 Aligned_cols=99 Identities=11% Similarity=0.087 Sum_probs=65.1
Q ss_pred CCeEEEEECCCC--cEEEEeccCCCCeEEEEECCCCCEEEEEEcCC---CeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 348 AGIVVVKDFVTR--AIISQFKAHTSPISALCFDPSGTLLVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 348 dG~V~VwDl~s~--~~i~~~~aHtspIsaLaFSPdGtlLATAS~dG---t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
...|.+||+.++ +....|..+...+.... +|+|+.|+..+.++ ..|.+|++.. + . ...
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~-------~--------~-~~~ 355 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG-------S--------T-PRF 355 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS-------S--------S-CEE
T ss_pred cceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC-------C--------c-ccc
Confidence 457889999876 31456666666665554 49999998887643 2377777642 1 0 022
Q ss_pred EEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 423 YKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 423 ~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
..+..+ ....|.+++|+ +++.+++...+++.+||.++..++
T Consensus 356 ~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 396 (741)
T 1yr2_A 356 DTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK 396 (741)
T ss_dssp EEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred EEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 333333 23357888998 677888899999999998875443
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.77 E-value=0.00028 Score=80.14 Aligned_cols=89 Identities=9% Similarity=0.100 Sum_probs=70.3
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
.+|.|++||+.+......+..|..+|..+.+.+.. +|.++.+|. +.+|++.. + ... .+.
T Consensus 104 ~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~-L~v~dl~~-------~----------~~~-~~~ 162 (388)
T 1xip_A 104 TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVND-LSALDLRT-------K----------STK-QLA 162 (388)
T ss_dssp ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSE-EEEEETTT-------C----------CEE-EEE
T ss_pred cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCC-EEEEEccC-------C----------ccc-ccc
Confidence 56899999999887777788899999998887653 888888775 89999963 2 122 221
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
..|.+++|||+| +++|..||++++|+.+..
T Consensus 163 -----~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~ 192 (388)
T 1xip_A 163 -----QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNG 192 (388)
T ss_dssp -----ESEEEEEECSSE--EEEEETTSCEEEEEEETT
T ss_pred -----CCceEEEEcCCc--eEEEEcCCcEEEEcCCCc
Confidence 358999999999 788999999999976543
No 208
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.68 E-value=0.01 Score=71.15 Aligned_cols=94 Identities=9% Similarity=0.019 Sum_probs=63.7
Q ss_pred CCeEEEEECCCCcE--EEEeccCCCCeEEEEECCCCCEEEEEEcCCC--eEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 001935 348 AGIVVVKDFVTRAI--ISQFKAHTSPISALCFDPSGTLLVTASVYGN--NINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (994)
Q Consensus 348 dG~V~VwDl~s~~~--i~~~~aHtspIsaLaFSPdGtlLATAS~dGt--~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~ 423 (994)
.+.|.++|+.++.. ...|..|...+. .|+++|..|+....++. .|++|++. | ..+.
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--------g----------~~~~ 363 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--------G----------KRVR 363 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--------S----------CEEE
T ss_pred CCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--------C----------CeeE
Confidence 46788888887643 345677776665 99999998887766553 47777763 2 1333
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCC----CeEEEEecCC
Q 001935 424 KLHRGITSATIQDICFSHYSQWIAIVSSK----GTCHVFVLSP 462 (994)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~LAsgS~d----GTVhIw~I~~ 462 (994)
.+.-. ....+..+++++|++.|+....+ +++.+|++..
T Consensus 364 ~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 364 EVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp EECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred EeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence 44221 22457888999999988777655 7888888754
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.63 E-value=0.016 Score=61.46 Aligned_cols=50 Identities=8% Similarity=-0.000 Sum_probs=40.3
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC-CeEEEEeCCeEEEEECCCCce
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP-RIVAVGLATQIYCFDALTLEN 223 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~sV~~S~-~iLAVgl~~~I~IwDa~Tle~ 223 (994)
++|..||.++++. ..+.+...+.++++++ ..|.++....|++||..+.+.
T Consensus 35 ~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 35 KKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSA 85 (297)
T ss_dssp TEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEE
T ss_pred CEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcE
Confidence 6899999998875 5677788899999987 346677788999999887654
No 210
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.62 E-value=0.08 Score=54.20 Aligned_cols=91 Identities=14% Similarity=0.073 Sum_probs=57.1
Q ss_pred CCeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 348 AGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~-~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
.+.|.+||. +++... .+..+...+.+|+++++|+++++... +..|.+|+.. |. ...+.+.
T Consensus 203 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~~~i~~~d~~--------g~---------~~~~~~~ 263 (299)
T 2z2n_A 203 GNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG-ANKIGRLTSN--------NI---------IEEYPIQ 263 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT-TTEEEEEETT--------TE---------EEEEECS
T ss_pred CceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC-CceEEEECCC--------Cc---------eEEEeCC
Confidence 456777777 554332 23345567899999999998776544 3458889862 20 1222222
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
.+ ...+.++++ ++++..++.+ .+.+..|+..
T Consensus 264 ~~--~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 264 IK--SAEPHGICF-DGETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp SS--SCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred CC--CCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence 21 246899999 8888776655 5555566544
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.50 E-value=0.11 Score=53.03 Aligned_cols=92 Identities=12% Similarity=0.083 Sum_probs=58.2
Q ss_pred CCeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 348 AGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~-~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
.+.|.++|. +++... .+..+...+..|+++++|++.++... +..|.+|+.. |. ...+.+.
T Consensus 166 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~~--------g~---------~~~~~~~ 226 (300)
T 2qc5_A 166 NNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM-GNKIGRITTT--------GE---------ISEYDIP 226 (300)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT-TTEEEEECTT--------CC---------EEEEECS
T ss_pred CCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC-CCEEEEEcCC--------Cc---------EEEEECC
Confidence 345666666 343332 12234456889999999998876554 4458888862 21 1222222
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I 460 (994)
. ....+.+|+++++|+..++...++.|.+|+.
T Consensus 227 ~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 227 T--PNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp S--TTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred C--CCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 1 2245899999999996666666788888875
No 212
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.43 E-value=0.0035 Score=64.05 Aligned_cols=94 Identities=11% Similarity=0.012 Sum_probs=60.2
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
++.|.+||..+.........+...+..|+|+|+|+++++... +..|.+|+... + ........
T Consensus 128 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-~~~i~~~~~~~-------~----------~~~~~~~~ 189 (270)
T 1rwi_B 128 NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD-NNRVVKLEAES-------N----------NQVVLPFT 189 (270)
T ss_dssp GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG-GTEEEEECTTT-------C----------CEEECCCS
T ss_pred CCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC-CCEEEEEecCC-------C----------ceEeeccc
Confidence 345666665544333222333446788999999998876655 44589998642 1 11111111
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
+. ..+.+|+|++||+.+++...++.|.+|+..
T Consensus 190 ~~--~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 190 DI--TAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp SC--CSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred CC--CCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 11 458899999999877777778899998753
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.35 E-value=0.08 Score=59.58 Aligned_cols=96 Identities=5% Similarity=-0.076 Sum_probs=58.8
Q ss_pred CCCeEEEEECCCCcEEEE----eccCCC--CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcce
Q 001935 347 NAGIVVVKDFVTRAIISQ----FKAHTS--PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~----~~aHts--pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~ 420 (994)
.++.|..||..++..... ..++.. |.+.|+|+|++..|..+....+.|++|+.. | .
T Consensus 238 ~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~--------g----------~ 299 (409)
T 3hrp_A 238 SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD--------G----------E 299 (409)
T ss_dssp TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT--------C----------C
T ss_pred CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC--------C----------C
Confidence 356788888877653222 222222 334999999644444455546668888753 2 1
Q ss_pred EEEEE-ec----ccc--------cccEEEEEEccCCCEEEEEe-CCCeEEEEecC
Q 001935 421 HLYKL-HR----GIT--------SATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (994)
Q Consensus 421 ~l~~L-~R----G~t--------~a~I~sIaFSpDg~~LAsgS-~dGTVhIw~I~ 461 (994)
+..+ -. |.. -.....|+|++||+.+++-+ .+++|++|++.
T Consensus 300 -~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 300 -CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp -EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred -EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence 1111 11 100 12478999999999888877 88899998864
No 214
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=97.35 E-value=0.00059 Score=81.47 Aligned_cols=115 Identities=10% Similarity=0.015 Sum_probs=73.9
Q ss_pred CCCcccccccccc-ccCCCCeEEEEECCCCcEEEEeccCCCCe--EEEEECCCCCEEEEEEcCCC------------eEE
Q 001935 331 PNSVWKVGRHAGA-DMDNAGIVVVKDFVTRAIISQFKAHTSPI--SALCFDPSGTLLVTASVYGN------------NIN 395 (994)
Q Consensus 331 ~s~~~k~g~~~~a-s~s~dG~V~VwDl~s~~~i~~~~aHtspI--saLaFSPdGtlLATAS~dGt------------~Ir 395 (994)
++|+++..++... .++.+..|+|||+.+++.+. ..|...+ ..++|+|||+.|+.++.+++ .|+
T Consensus 128 ~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~ 205 (695)
T 2bkl_A 128 VSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR 205 (695)
T ss_dssp ECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred ECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence 3455554443332 34456899999999987641 1222223 67999999999999987543 389
Q ss_pred EEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC--eEEEEecCC
Q 001935 396 IFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG--TCHVFVLSP 462 (994)
Q Consensus 396 Vwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dG--TVhIw~I~~ 462 (994)
+|++.. +. ...+.++... .+...+.+++|||||++|+.++.++ +..||-++.
T Consensus 206 ~~~l~t-------~~------~~~~lv~~~~--~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~ 259 (695)
T 2bkl_A 206 YHTLGT-------EP------SKDTVVHERT--GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRP 259 (695)
T ss_dssp EEETTS-------CG------GGCEEEECCC--CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECT
T ss_pred EEECCC-------Cc------hhceEEEecC--CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcC
Confidence 999853 10 0113444332 1224688999999999999988776 555665544
No 215
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.31 E-value=0.03 Score=67.48 Aligned_cols=42 Identities=2% Similarity=-0.049 Sum_probs=30.8
Q ss_pred eEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 420 VHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
+.+.++.-+ ..+++..++.++..|++++.+|++++|++...+
T Consensus 468 ~~~W~~~~~---~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 468 KAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp EEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cEEeecCCC---CCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 445554433 234566788899999999999999999987643
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.31 E-value=0.039 Score=58.47 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=51.8
Q ss_pred CeEEEEECCCCcEE--EEe-ccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 349 GIVVVKDFVTRAII--SQF-KAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 349 G~V~VwDl~s~~~i--~~~-~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
+.|.+||+..+... ..+ .........|+++++|++.++. . + .|.+|+.. | ..+.++
T Consensus 215 ~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~-~-gv~~~~~~--------g----------~~~~~~ 273 (305)
T 3dr2_A 215 VEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-G-T-GVCVFDSD--------G----------QLLGHI 273 (305)
T ss_dssp CEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-S-S-EEEEECTT--------S----------CEEEEE
T ss_pred CEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-C-C-cEEEECCC--------C----------CEEEEE
Confidence 45666776543310 111 1122234568999999977655 3 3 38888852 3 244444
Q ss_pred ecccccccEEEEEEccCCCEEEEEeCCCeEEE
Q 001935 426 HRGITSATIQDICFSHYSQWIAIVSSKGTCHV 457 (994)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhI 457 (994)
.-. ..+.+++|++|++.|.+++.++..++
T Consensus 274 ~~~---~~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 274 PTP---GTASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp ECS---SCCCEEEECTTSCEEEEEETTEEEEE
T ss_pred ECC---CceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 322 24788999999999999998754443
No 217
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.30 E-value=0.00067 Score=77.04 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=73.2
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc---------CCCeEEEEeCCCCcccCCCCCCccccCCc
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~---------dGt~IrVwdi~p~~~~~~sG~~~~~~~~s 418 (994)
++.|.++|..+++++.++..-..| . |+|||||++|..++. ++..|.|||... +
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t-------~--------- 119 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT-------L--------- 119 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-------C---------
T ss_pred CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-------C---------
Confidence 679999999999999999987778 4 999999998887762 234699999864 2
Q ss_pred ceEEEEEeccc-----ccccEEEEEEccCCCEEEEEeC--CCeEEEEecCCCC
Q 001935 419 HVHLYKLHRGI-----TSATIQDICFSHYSQWIAIVSS--KGTCHVFVLSPFG 464 (994)
Q Consensus 419 ~~~l~~L~RG~-----t~a~I~sIaFSpDg~~LAsgS~--dGTVhIw~I~~~g 464 (994)
..+.++.-+. ....-..++|+|||++|.++.. +++|.|+++....
T Consensus 120 -~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~ 171 (386)
T 3sjl_D 120 -LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 171 (386)
T ss_dssp -CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred -eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc
Confidence 2334432111 1112356999999999999874 6899999987753
No 218
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.28 E-value=0.21 Score=51.03 Aligned_cols=90 Identities=13% Similarity=0.063 Sum_probs=54.1
Q ss_pred CCeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 348 AGIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~-~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
.+.|.+||. +++... .+..+...+.+|+++++|++.++... +..|.+|+.. |. ...+.+.
T Consensus 208 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~-~~~i~~~~~~--------g~---------~~~~~~~ 268 (300)
T 2qc5_A 208 GNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWG-ANQIGRITND--------NT---------IQEYQLQ 268 (300)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT-TTEEEEECTT--------SC---------EEEEECC
T ss_pred CCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccC-CCeEEEECCC--------Cc---------EEEEECC
Confidence 345666776 333322 23345567889999999997776544 3458888862 21 1223332
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I 460 (994)
.+ ...+.+|++++||+..++.. . .|..|+.
T Consensus 269 ~~--~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 269 TE--NAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ST--TCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred cc--CCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 22 24578999999998555544 4 5555543
No 219
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.28 E-value=0.099 Score=56.38 Aligned_cols=174 Identities=14% Similarity=0.087 Sum_probs=113.2
Q ss_pred CEEEEEECCCCeEEEEEeCCCc--EEEEEecCCeEEEEe--CCeEEEEECCCCceeEEEeecCCccccCCCccccccCcc
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSS--VCMVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~--V~sV~~S~~iLAVgl--~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~g 248 (994)
.+|+++|+++++.+.++..... ...+.+..+.|.++. ++.|.++|..+++.+.++..- .+ .
T Consensus 44 s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~----~---------- 108 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK----D---------- 108 (266)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS----S----------
T ss_pred CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC----C----------
Confidence 6899999999999999987553 346777777777666 558999999999988776532 11 0
Q ss_pred ceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCC
Q 001935 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (994)
Q Consensus 249 plAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~ 328 (994)
.+.+ ++.+ +.+.
T Consensus 109 g~gl-----t~Dg-----------------------------~~l~---------------------------------- 120 (266)
T 2iwa_A 109 GWGL-----ATDG-----------------------------KILY---------------------------------- 120 (266)
T ss_dssp CCEE-----EECS-----------------------------SSEE----------------------------------
T ss_pred eEEE-----EECC-----------------------------CEEE----------------------------------
Confidence 0111 1111 1110
Q ss_pred ccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC--CC---CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCc
Q 001935 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH--TS---PISALCFDPSGTLLVTASVYGNNINIFRIMPSC 403 (994)
Q Consensus 329 ~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aH--ts---pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~ 403 (994)
.+ ..+++|.++|..+.+.+..+.-- .. .++.|.|. +|++.|+. .....|.+.|...
T Consensus 121 --------------vs-~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~-~~~~~V~vID~~t-- 181 (266)
T 2iwa_A 121 --------------GS-DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANI-WQTDCIARISAKD-- 181 (266)
T ss_dssp --------------EE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE-TTSSEEEEEETTT--
T ss_pred --------------EE-CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEec-CCCCeEEEEECCC--
Confidence 01 23578999999999888887732 22 36788898 88655544 4455688888753
Q ss_pred ccCCCCCCccccCCcceEEEEEec-ccc----------cccEEEEEEccCCCEEEEEe-CCCeEEEEecCCC
Q 001935 404 MRSGSGNHKYDWNSSHVHLYKLHR-GIT----------SATIQDICFSHYSQWIAIVS-SKGTCHVFVLSPF 463 (994)
Q Consensus 404 ~~~~sG~~~~~~~~s~~~l~~L~R-G~t----------~a~I~sIaFSpDg~~LAsgS-~dGTVhIw~I~~~ 463 (994)
| +.+.++.- |.. ......|+|+||++.|.+++ ..+++.+.++.+.
T Consensus 182 -----g----------~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 182 -----G----------TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp -----C----------CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred -----C----------cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 3 23334331 211 13578999999987666555 6678888777664
No 220
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.26 E-value=0.032 Score=60.22 Aligned_cols=172 Identities=10% Similarity=0.071 Sum_probs=109.8
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEE--EEEecCCeEEEEe--CCeEEEEECCCCceeEEEeecCCccccCCCccccccCcc
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVC--MVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYG 248 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~--sV~~S~~iLAVgl--~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~~g 248 (994)
..|+.+|+++|+.+.++......+ .|....+.|.+.. ++.+.+||..+++.+.++..... |
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e------G--------- 129 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE------G--------- 129 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSC------C---------
T ss_pred ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCC------c---------
Confidence 489999999999999999887664 4677676666655 66899999999998887753111 0
Q ss_pred ceEEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCC
Q 001935 249 PMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSP 328 (994)
Q Consensus 249 plAlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~ 328 (994)
.+ |++.+ +.|.
T Consensus 130 -~g-----lt~dg-----------------------------~~L~---------------------------------- 140 (262)
T 3nol_A 130 -WG-----LTHND-----------------------------QYLI---------------------------------- 140 (262)
T ss_dssp -CC-----EEECS-----------------------------SCEE----------------------------------
T ss_pred -eE-----EecCC-----------------------------CEEE----------------------------------
Confidence 11 11111 1110
Q ss_pred ccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccC--C---CCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCc
Q 001935 329 VSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAH--T---SPISALCFDPSGTLLVTASVYGNNINIFRIMPSC 403 (994)
Q Consensus 329 ~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aH--t---spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~ 403 (994)
.+ +..++|.++|..+.+++..+... . ..++.|.|. +|++.| +......|.+.|...
T Consensus 141 --------------~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lya-n~w~~~~I~vIDp~t-- 201 (262)
T 3nol_A 141 --------------MS-DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFA-NVWQTNKIVRIDPET-- 201 (262)
T ss_dssp --------------EC-CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEE-EETTSSEEEEECTTT--
T ss_pred --------------EE-CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEE-EEccCCeEEEEECCC--
Confidence 01 12567999999999888887652 2 235567886 887665 444456688888643
Q ss_pred ccCCCCCCccccCCcceEEEEEec--------ccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 404 MRSGSGNHKYDWNSSHVHLYKLHR--------GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 404 ~~~~sG~~~~~~~~s~~~l~~L~R--------G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
|. ......+.. .........|||+|+++.|.+.+..=- ++|.|.
T Consensus 202 -----G~--------V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp-~~~ev~ 253 (262)
T 3nol_A 202 -----GK--------VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP-KVFEIT 253 (262)
T ss_dssp -----CB--------EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS-EEEEEE
T ss_pred -----Cc--------EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC-ceEEEE
Confidence 31 122233310 011236789999999999988876643 455543
No 221
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=97.21 E-value=0.032 Score=58.03 Aligned_cols=100 Identities=10% Similarity=0.043 Sum_probs=60.9
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEEC----CCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFD----PSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFS----PdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~ 423 (994)
.+.|..||.. ++.. .+..+......++|+ |+|+.|..+...+..|.+|++... |. + .....+.
T Consensus 152 ~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~------g~----~-~~~~~~~ 218 (314)
T 1pjx_A 152 FGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP------AK----I-ENKKVWG 218 (314)
T ss_dssp CEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET------TE----E-EEEEEEE
T ss_pred CCeEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC------Cc----c-ccceEEE
Confidence 3456666665 4433 233344456889999 999766666554566999997421 20 0 0001112
Q ss_pred EEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 424 KLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 424 ~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
.+. +.....+..|+|++||+.+++...++.|.+|+..
T Consensus 219 ~~~-~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 219 HIP-GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp ECC-CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ECC-CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 221 1110357889999999988888888999998754
No 222
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.19 E-value=0.00017 Score=80.12 Aligned_cols=91 Identities=12% Similarity=0.010 Sum_probs=45.2
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
..+|.|..||..+++.+..+..|. ...++|++.+|++++.+|+ |+.||... | +.+.++
T Consensus 99 ~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~t-------G----------~~~W~~ 156 (369)
T 2hz6_A 99 KKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKT-------R----------ELRWNA 156 (369)
T ss_dssp EEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSS-------S----------SCCCEE
T ss_pred eCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCC-------C----------CEEEeE
Confidence 457889999999999988887764 2456788999998888554 89999753 3 122222
Q ss_pred ecccccccEEEEEEccCC---CEEEEEeCCCeEEEEecCC
Q 001935 426 HRGITSATIQDICFSHYS---QWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg---~~LAsgS~dGTVhIw~I~~ 462 (994)
..+ .....+++.|. ..+.+++.+|+++.|+...
T Consensus 157 ~~~----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 157 TYF----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp EEE----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred ecc----cccCccccCCccccceEEEECCCCEEEEEECCC
Confidence 111 01223445543 5677889999999998764
No 223
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.15 E-value=0.11 Score=55.88 Aligned_cols=97 Identities=12% Similarity=0.126 Sum_probs=58.6
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCC-CCccccCCcceEEEEEec
Q 001935 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSG-NHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG-~~~~~~~~s~~~l~~L~R 427 (994)
+.|..+| +++. ..+..+......++|+|||+.|..+...+..|.+|++.+. .| . .. ..+.+..+.
T Consensus 161 ~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~-----~Gl~----~~-~~~~~~~~~- 226 (326)
T 2ghs_A 161 GSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR-----TGLP----TG-KAEVFIDST- 226 (326)
T ss_dssp EEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT-----TCCB----SS-CCEEEEECT-
T ss_pred eEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccc-----cCCc----cc-CceEEEECC-
Confidence 4455555 3433 2333333456789999999987766655567999997421 02 1 00 011222321
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I 460 (994)
+ ....+..+++++||+..++....+.|.+|+.
T Consensus 227 ~-~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 227 G-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp T-SSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred C-CCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 1 1235688999999987777767788888874
No 224
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.13 E-value=0.0034 Score=70.06 Aligned_cols=94 Identities=11% Similarity=-0.022 Sum_probs=68.7
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc---------CCCeEEEEeCCCCcccCCCCCCccccCCcce
Q 001935 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV---------YGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (994)
Q Consensus 350 ~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~---------dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~ 420 (994)
.|.++|..+++++..+..-..| .++|||||++|+.+.. .+..|.+||+.. + .
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t-------~----------~ 108 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT-------F----------L 108 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC-------C----------c
Confidence 8999999999999999877666 8999999999998863 245689999853 1 1
Q ss_pred EEEEEecc-----cccccEEEEEEccCCCEEEEEeC--CCeEEEEecCCC
Q 001935 421 HLYKLHRG-----ITSATIQDICFSHYSQWIAIVSS--KGTCHVFVLSPF 463 (994)
Q Consensus 421 ~l~~L~RG-----~t~a~I~sIaFSpDg~~LAsgS~--dGTVhIw~I~~~ 463 (994)
.+.++.-+ .+...-..++|||||++|.+++. +++|.|++ ...
T Consensus 109 ~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~ 157 (373)
T 2mad_H 109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG 157 (373)
T ss_pred EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC
Confidence 22222111 00112457999999999999885 47899988 543
No 225
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.10 E-value=0.026 Score=65.49 Aligned_cols=100 Identities=11% Similarity=0.193 Sum_probs=73.1
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCC--eE-EEEECCCCCEEEEEE------------------cCCCeEEEEeCCCCcc
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAHTSP--IS-ALCFDPSGTLLVTAS------------------VYGNNINIFRIMPSCM 404 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aHtsp--Is-aLaFSPdGtlLATAS------------------~dGt~IrVwdi~p~~~ 404 (994)
...|.|.++|..+.+++.++..-..+ +. .+.|+|+++.|+|+. ..|..|.|||+..
T Consensus 161 ~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~--- 237 (462)
T 2ece_A 161 EGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK--- 237 (462)
T ss_dssp CSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT---
T ss_pred CCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC---
Confidence 45688999999999999999743333 22 378899999999886 3478899999853
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEE--ccCCCEEEEEe------CCCeEEEEecCC
Q 001935 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICF--SHYSQWIAIVS------SKGTCHVFVLSP 462 (994)
Q Consensus 405 ~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaF--SpDg~~LAsgS------~dGTVhIw~I~~ 462 (994)
+ +.+.++.-|........|.| +||++++.++. .+++|.+|..+.
T Consensus 238 ----~----------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 238 ----R----------KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp ----T----------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred ----C----------cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 2 45556655522233455656 99999998887 567898888753
No 226
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.07 E-value=0.025 Score=61.33 Aligned_cols=56 Identities=5% Similarity=-0.034 Sum_probs=45.4
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEE--EEEecCCeEEEEe--CCeEEEEECCCCceeEEEee
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVC--MVRCSPRIVAVGL--ATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~--sV~~S~~iLAVgl--~~~I~IwDa~Tle~l~tL~t 229 (994)
+.|+.+|+++|+.+.++ ++...+ .|.+..+.|.+.. ++.+.+||..+++.+.++..
T Consensus 75 g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 75 GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 56999999999999998 877654 4777776666655 66899999999998887763
No 227
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.07 E-value=0.0099 Score=68.24 Aligned_cols=56 Identities=9% Similarity=-0.129 Sum_probs=44.8
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecC--CeEEEEe-----------CCeEEEEECCCCceeEEEee
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSP--RIVAVGL-----------ATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~sV~~S~--~iLAVgl-----------~~~I~IwDa~Tle~l~tL~t 229 (994)
++|.++|+.+++.+.++.....- .|.+++ +.|.|+. ++.|.++|..+++.+.++..
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v 167 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL 167 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence 58999999999999999765433 889987 5666654 45799999999998877763
No 228
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.98 E-value=0.12 Score=55.30 Aligned_cols=56 Identities=9% Similarity=-0.003 Sum_probs=45.4
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEE--EEEecCCeEEEEe--CCeEEEEECCCCceeEEEe
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVC--MVRCSPRIVAVGL--ATQIYCFDALTLENKFSVL 228 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~--sV~~S~~iLAVgl--~~~I~IwDa~Tle~l~tL~ 228 (994)
..|+.+|+++|+.+..+..+...+ .+....+.|.+.. ++.+.+||..|++.+.++.
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~ 102 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFR 102 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEe
Confidence 589999999999999999887653 5566666666655 6689999999999888775
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=96.90 E-value=0.0014 Score=73.80 Aligned_cols=94 Identities=10% Similarity=-0.060 Sum_probs=70.7
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEE---------cCCCeEEEEeCCCCcccCCCCCCccccCCcce
Q 001935 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTAS---------VYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (994)
Q Consensus 350 ~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS---------~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~ 420 (994)
.|.|+|..+++++.+|..-..| .++|+|||++|..+. +++..|.|||+.. + +
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-------~----------~ 107 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-------F----------L 107 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-------C----------C
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-------C----------C
Confidence 8999999999999999877778 799999999999887 3356799999864 2 3
Q ss_pred EEEEEecc-cc----cccEEEEEEccCCCEEEEEeC--CCeEEE--EecCC
Q 001935 421 HLYKLHRG-IT----SATIQDICFSHYSQWIAIVSS--KGTCHV--FVLSP 462 (994)
Q Consensus 421 ~l~~L~RG-~t----~a~I~sIaFSpDg~~LAsgS~--dGTVhI--w~I~~ 462 (994)
.+.++.-| .. ......++|||||+||.++.. ..++.| +++..
T Consensus 108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 44554322 00 012346999999999999975 467888 77654
No 230
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.62 E-value=0.1 Score=54.57 Aligned_cols=92 Identities=13% Similarity=0.091 Sum_probs=56.2
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
++.+..+|. +++.+..+..+...+..+.++++|++.+ ++.+|. |..|+. . | ..+..+.-
T Consensus 234 ~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~gg-l~~~d~-~-------g----------~~~~~~~~ 292 (330)
T 3hxj_A 234 DGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYF-GSYDGH-LYAINP-D-------G----------TEKWNFET 292 (330)
T ss_dssp TTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEE-ECTTCE-EEEECT-T-------S----------CEEEEEEC
T ss_pred CCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEE-ecCCCC-EEEECC-C-------C----------cEEEEEEc
Confidence 445555663 4455555555555556678888888665 555454 677774 1 3 23444432
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
....+.++.+.+|++ |.+++.+|.+++......
T Consensus 293 --~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 293 --GSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp --SSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred --CCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 233567788888876 567899999999887653
No 231
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.55 E-value=0.13 Score=61.34 Aligned_cols=220 Identities=11% Similarity=0.061 Sum_probs=125.5
Q ss_pred CEEEEEECCCCeEEEEEeCC--CcEEEEEe-c-C--CeEEEEe-------------------CCeEEEEECCCCceeEEE
Q 001935 173 TAVRFYSFQSHCYEHVLRFR--SSVCMVRC-S-P--RIVAVGL-------------------ATQIYCFDALTLENKFSV 227 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~--S~V~sV~~-S-~--~iLAVgl-------------------~~~I~IwDa~Tle~l~tL 227 (994)
++|.+.|+++.+++..++.+ ..+..+++ . | +.|.++. ++.+.+.|+.+++...++
T Consensus 112 ~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI 191 (595)
T 1fwx_A 112 TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQV 191 (595)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEE
Confidence 68999999999999977664 46888887 3 3 5666663 125899999999988888
Q ss_pred eecCCccccCCCccccccCccceEEcc--cEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhh
Q 001935 228 LTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQF 305 (994)
Q Consensus 228 ~t~p~p~~~~~g~~~vnv~~gplAlgp--RwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~l 305 (994)
....+| --+++++ +|+..+.... ..+.. ... .+...-..+++ +.. +++
T Consensus 192 ~Vgg~p--------------d~~~~spdGk~~~vt~~~s---e~~~~-i~~--------~~~~~~d~v~V-~~~---~~~ 241 (595)
T 1fwx_A 192 LVSGNL--------------DNCDADYEGKWAFSTSYNS---EKGMT-LPE--------MTAAEMDHIVV-FNI---AEI 241 (595)
T ss_dssp EESSCC--------------CCEEECSSSSEEEEEESCT---TCCSS-HHH--------HTCCSEEEEEE-EEH---HHH
T ss_pred EeCCCc--------------cceEECCCCCEEEEEecCc---ccCcc-hhh--------ccccccceEEE-eec---cce
Confidence 753333 2356665 6655443210 00000 000 00000000000 000 000
Q ss_pred hcccceeeccccccccCCCCCCCccCCCccccccccccccCCCCeEEEEECCC--CcE-EEEeccCCCCeEEEEECCCCC
Q 001935 306 AAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT--RAI-ISQFKAHTSPISALCFDPSGT 382 (994)
Q Consensus 306 a~Gi~ktlS~y~~~l~p~~s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s--~~~-i~~~~aHtspIsaLaFSPdGt 382 (994)
.. ..++ ++. ...+.|.|.|..+ ++. +..+..-.+| -.+.|+|||+
T Consensus 242 ~~------------~v~~-----------Gk~--------~~i~~V~VID~~~~~~~~~~~~Ipvg~~P-hGv~~sPDGk 289 (595)
T 1fwx_A 242 EK------------AIAA-----------GDY--------QELNGVKVVDGRKEASSLFTRYIPIANNP-HGCNMAPDKK 289 (595)
T ss_dssp HH------------HHHH-----------TCS--------EEETTEEEEECSGGGCCSSEEEEEEESSC-CCEEECTTSS
T ss_pred eE------------eccC-----------CCe--------eEECcEEEEeCcccCCceeEEEEecCCCc-eEEEEcCCCC
Confidence 00 0011 110 0114599999998 555 5666543333 4689999999
Q ss_pred EEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 383 LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 383 lLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
+++.++.....|.|+|+...... -.| ........+.++.-| ..-+.++|+|||....+.-.+++|-+|++..
T Consensus 290 ~v~V~~~~s~~VsVid~~~~~~~-~~~----~l~~~~~v~~~v~vG---~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 290 HLCVAGKLSPTVTVLDVTRFDAV-FYE----NADPRSAVVAEPELG---LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEEECTTSSBEEEEEGGGHHHH-HHS----CCCGGGGEEECCBCC---SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEEEeCCCCCeEEEEECcccccc-ccc----ccCcccceEEEcCCC---CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 99999987778999998631000 000 001111233344444 2468899999994445677789999999876
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=96.49 E-value=0.0019 Score=71.61 Aligned_cols=54 Identities=17% Similarity=0.065 Sum_probs=23.8
Q ss_pred CCEEEEEECCCCeEEEEEeCCC-------cEEEEEecCCeEEE-EeCCeEEEEECCCCceeEEEe
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRS-------SVCMVRCSPRIVAV-GLATQIYCFDALTLENKFSVL 228 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S-------~V~sV~~S~~iLAV-gl~~~I~IwDa~Tle~l~tL~ 228 (994)
++.|..||.++|+.+..++++. ++. . ....|++ +.++.|++||+.+++.+.++.
T Consensus 58 dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~--~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~ 119 (369)
T 2hz6_A 58 DGSLYTLGSKNNEGLTKLPFTIPELVQASPCR--S-SDGILYMGKKQDIWYVIDLLTGEKQQTLS 119 (369)
T ss_dssp TCCEEEC-----CCSEECSCCHHHHHTTCSCC--------CCCCEEEEEEEEECCC---------
T ss_pred CCEEEEEECCCCceeeeeeccCccccccCceE--e-cCCEEEEEeCCCEEEEEECCCCcEEEEec
Confidence 3679999999998877766541 221 1 2233444 456689999999988765543
No 233
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.34 E-value=0.57 Score=50.70 Aligned_cols=57 Identities=9% Similarity=-0.128 Sum_probs=48.3
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEee
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~sV~~S~~iLAVgl-~~~I~IwDa~Tle~l~tL~t 229 (994)
+++.+||.++.+.+.++.+...=++++...+.|.++. .++|+++|..|++.+.++..
T Consensus 116 ~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 116 GLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 6899999999999999998766677778888777765 56899999999998887763
No 234
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.31 E-value=0.41 Score=51.52 Aligned_cols=95 Identities=11% Similarity=0.006 Sum_probs=62.4
Q ss_pred CCCCeEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aH-tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~ 424 (994)
..++.|.++|..+++++.+|..- ..+ +.+++||+.|..+.. +..|.++|.... +.+.+
T Consensus 83 ~~~~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~g-s~~l~viD~~t~-----------------~v~~~ 141 (266)
T 2iwa_A 83 WLKNIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDG-TSILYEIDPHTF-----------------KLIKK 141 (266)
T ss_dssp TTCSEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECS-SSEEEEECTTTC-----------------CEEEE
T ss_pred ecCCEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECC-CCeEEEEECCCC-----------------cEEEE
Confidence 35788999999999999999744 222 346668887777664 556889887531 23333
Q ss_pred Eec---ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 425 LHR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 425 L~R---G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
+.- |..-..++.+.|. |++..+..-.+++|.+-+...
T Consensus 142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~t 181 (266)
T 2iwa_A 142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKD 181 (266)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTT
T ss_pred EEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCC
Confidence 322 2222247789998 786555555678888777654
No 235
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=96.30 E-value=1.6 Score=47.05 Aligned_cols=89 Identities=11% Similarity=0.058 Sum_probs=52.5
Q ss_pred CCCeEEEEECCCCcEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 347 NAGIVVVKDFVTRAIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~a-HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
.+|.|..+|..+++.+..... ....+....+ .+..|..++.+|. +.+||... | +.+.++
T Consensus 285 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~-l~~~d~~t-------G----------~~~~~~ 344 (376)
T 3q7m_A 285 QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGY-LHWINVED-------G----------RFVAQQ 344 (376)
T ss_dssp TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSE-EEEEETTT-------C----------CEEEEE
T ss_pred CCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCe-EEEEECCC-------C----------cEEEEE
Confidence 467788888888887776652 2222333333 2456666777564 88999753 4 344444
Q ss_pred ecccccccEE-EEEEccCCCEEEEEeCCCeEEEEe
Q 001935 426 HRGITSATIQ-DICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 426 ~RG~t~a~I~-sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
.-. ...+. .... .+..|.+++.+|+++.|+
T Consensus 345 ~~~--~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 345 KVD--SSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ECC--TTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred ecC--CCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 321 11111 1112 256788899999999886
No 236
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.24 E-value=0.46 Score=51.24 Aligned_cols=57 Identities=4% Similarity=-0.007 Sum_probs=47.3
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEee
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~sV~~S~~iLAVgl-~~~I~IwDa~Tle~l~tL~t 229 (994)
+++.+||.++.+.+.++++...=+.+....+.|.++. .++|+++|..|++.+.++..
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred CEEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 6899999999999999998765567777777777755 55799999999998887763
No 237
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.14 E-value=0.19 Score=60.47 Aligned_cols=57 Identities=18% Similarity=0.026 Sum_probs=41.3
Q ss_pred CEEEEEECCCCeEEEEEeCCCc-----------E-EEEEecCCeEEEEe-CCeEEEEECCCCceeEEEee
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSS-----------V-CMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~-----------V-~sV~~S~~iLAVgl-~~~I~IwDa~Tle~l~tL~t 229 (994)
+.|.-+|.++|+.+-.++.... + ..+......|.++. ++.|+.+|+.|++.+.+...
T Consensus 87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 156 (677)
T 1kb0_A 87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNT 156 (677)
T ss_dssp GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecC
Confidence 5688899999999988865421 1 23444555566654 67899999999998887764
No 238
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=96.07 E-value=0.025 Score=67.73 Aligned_cols=115 Identities=8% Similarity=0.018 Sum_probs=70.4
Q ss_pred CCcccccccccc-ccCCCCeEEEEECCCCcEEEE-eccCCCCeEEEEECCCCCEEEEEEcCC------------CeEEEE
Q 001935 332 NSVWKVGRHAGA-DMDNAGIVVVKDFVTRAIISQ-FKAHTSPISALCFDPSGTLLVTASVYG------------NNINIF 397 (994)
Q Consensus 332 s~~~k~g~~~~a-s~s~dG~V~VwDl~s~~~i~~-~~aHtspIsaLaFSPdGtlLATAS~dG------------t~IrVw 397 (994)
+|+++..++... .++....|+|||+.+++.+.. +... ....++|+ ||+.|+.++.++ ..|.+|
T Consensus 137 SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~ 213 (693)
T 3iuj_A 137 SRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFH 213 (693)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEE
T ss_pred CCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEE
Confidence 344554443332 233446899999999986542 2221 12567899 999999888753 347888
Q ss_pred eCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC----CeEEEEecCCC
Q 001935 398 RIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK----GTCHVFVLSPF 463 (994)
Q Consensus 398 di~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~d----GTVhIw~I~~~ 463 (994)
++... . ...+++++.. +.+...+.+++|||||++|+..+.+ ..++++++...
T Consensus 214 ~lgt~-------~------~~~~~v~~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~ 269 (693)
T 3iuj_A 214 RLGTA-------Q------EDDRLVFGAI-PAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE 269 (693)
T ss_dssp ETTSC-------G------GGCEEEESCS-GGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred ECCCC-------c------ccceEEEecC-CCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence 87431 0 0113444321 1012346789999999999876653 36778777654
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.00 E-value=0.31 Score=58.27 Aligned_cols=99 Identities=14% Similarity=0.146 Sum_probs=60.3
Q ss_pred ccCCCCeEEEEECCCCc------------EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCC
Q 001935 344 DMDNAGIVVVKDFVTRA------------IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411 (994)
Q Consensus 344 s~s~dG~V~VwDl~s~~------------~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~ 411 (994)
....+.+|.|+|+.+.+ ++.++..-..| .-++|+|+| .+.++-.-+..|-+|++..... .-.|
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP-~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~-~~~g-- 368 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP-LHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIR-AYAG-- 368 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE-EEEEECTTS-EEEEEETTTTEEEEEEHHHHHH-HHHT--
T ss_pred eCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc-ceEEECCCC-eEEEEEecCCcEEEEEhhHhhh-hhcc--
Confidence 34567789999998653 56666655555 568999999 7777777677799999853100 0000
Q ss_pred ccccCCcceEEEEEecccccccE---EEEEEccCCCEEEEEeC
Q 001935 412 KYDWNSSHVHLYKLHRGITSATI---QDICFSHYSQWIAIVSS 451 (994)
Q Consensus 412 ~~~~~~s~~~l~~L~RG~t~a~I---~sIaFSpDg~~LAsgS~ 451 (994)
......+.++.-+...... ..++++|||+||.++..
T Consensus 369 ----~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 369 ----EKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp ----CSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred ----cccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 0011345555443221101 23467899999988753
No 240
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.86 E-value=0.42 Score=57.65 Aligned_cols=57 Identities=23% Similarity=0.078 Sum_probs=40.6
Q ss_pred CEEEEEECCCCeEEEEEeCCCc-----------E-EEEEecCCeEEEEe-CCeEEEEECCCCceeEEEee
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSS-----------V-CMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~-----------V-~sV~~S~~iLAVgl-~~~I~IwDa~Tle~l~tL~t 229 (994)
+.|.-+|.++|+.+-.++.... + ..+......|.++. ++.|+.+|+.|++.+.+...
T Consensus 80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 4688899999999888865321 1 12334455566655 77899999999998887664
No 241
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=95.85 E-value=0.066 Score=58.03 Aligned_cols=114 Identities=10% Similarity=0.094 Sum_probs=63.2
Q ss_pred CCeEEEEECCCCcEEEEeccC------CCCeEEEEECCCC-CEEEEEEc--CCCeEEEEeCCCCcccC-CCCCCccccCC
Q 001935 348 AGIVVVKDFVTRAIISQFKAH------TSPISALCFDPSG-TLLVTASV--YGNNINIFRIMPSCMRS-GSGNHKYDWNS 417 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aH------tspIsaLaFSPdG-tlLATAS~--dGt~IrVwdi~p~~~~~-~sG~~~~~~~~ 417 (994)
++.|.+||+.+++++..+..+ ...+..|+|+|++ .++++-+. ....|.||++....... ..+........
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~ 171 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED 171 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence 567999999998877766532 3456899999864 45555441 34568999975310000 00000000000
Q ss_pred -----cceEEEEEec-cc---ccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 418 -----SHVHLYKLHR-GI---TSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 418 -----s~~~l~~L~R-G~---t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
....++.... |. -...+..|+||||+++|.++...++ +||.++.
T Consensus 172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~ 224 (343)
T 2qe8_A 172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKS 224 (343)
T ss_dssp CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEH
T ss_pred cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEH
Confidence 0001100000 00 0123688999999999999988876 6777653
No 242
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.73 E-value=0.57 Score=56.46 Aligned_cols=29 Identities=10% Similarity=0.005 Sum_probs=24.4
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 435 QDICFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 435 ~sIaFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
+.-.++..+..|++++.||++++|+....
T Consensus 478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG 506 (689)
T 1yiq_A 478 NGGTLSTAGNLVFEGSADGRVIAYAADTG 506 (689)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred cCccceECCCEEEEECCCCcEEEEECCCC
Confidence 44567788999999999999999998764
No 243
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=95.58 E-value=3.2 Score=44.66 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=59.0
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 001935 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~ 424 (994)
+..+|.+..+|..+++.+..... .....+..+ +..|..++.+|. +..||... | ..+.+
T Consensus 245 ~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~-l~~~d~~t-------G----------~~~w~ 302 (376)
T 3q7m_A 245 LAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDR-VMALTIDG-------G----------VTLWT 302 (376)
T ss_dssp ECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCC-EEEEETTT-------C----------CEEEE
T ss_pred EecCcEEEEEECCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCe-EEEEECCC-------C----------cEEEe
Confidence 35688999999999998876653 334555553 556666776566 78889753 4 34444
Q ss_pred EecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 425 LHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 425 L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
.... ....+..... .+..|.+++.+|.+++|+...
T Consensus 303 ~~~~-~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 303 QSDL-LHRLLTSPVL--YNGNLVVGDSEGYLHWINVED 337 (376)
T ss_dssp ECTT-TTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred eccc-CCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence 4311 1111222222 356888999999999999765
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.49 E-value=0.89 Score=54.55 Aligned_cols=57 Identities=21% Similarity=-0.021 Sum_probs=40.5
Q ss_pred CEEEEEECCCCeEEEEEeCCCc-----------E-EEEEecCCeEEEEe-CCeEEEEECCCCceeEEEee
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSS-----------V-CMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~-----------V-~sV~~S~~iLAVgl-~~~I~IwDa~Tle~l~tL~t 229 (994)
+.|.-+|.++|+.+-.++.... + ..+......|.++. ++.|+.+|+.|++.+.+...
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 5788899999999888765321 1 12333445555554 67899999999999887764
No 245
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.48 E-value=1.4 Score=49.57 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=64.2
Q ss_pred CCCeEEEEECC-------CCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcc
Q 001935 347 NAGIVVVKDFV-------TRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH 419 (994)
Q Consensus 347 ~dG~V~VwDl~-------s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~ 419 (994)
.+|.+..|++. +.+.+.+|.-- +.+..|+.++....|..+-++ ..|..|+..|. .. ...
T Consensus 151 k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~--~~----------~~~ 216 (355)
T 3amr_A 151 KEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEED-EAIWKFSAEPD--GG----------SNG 216 (355)
T ss_dssp SSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETT-TEEEEEECSTT--SC----------SCC
T ss_pred CCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEeccc-ceEEEEeCCcC--CC----------CCc
Confidence 34677777662 33567777754 468899999988888888884 54555554442 10 011
Q ss_pred eEEEEEecccccccEEEEEE--ccCCC-EEEEEe-CCCeEEEEecC
Q 001935 420 VHLYKLHRGITSATIQDICF--SHYSQ-WIAIVS-SKGTCHVFVLS 461 (994)
Q Consensus 420 ~~l~~L~RG~t~a~I~sIaF--SpDg~-~LAsgS-~dGTVhIw~I~ 461 (994)
+.+..+-.|.-.+.+-.|+. .+|++ ||.+++ .+.+.+||+..
T Consensus 217 ~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 217 TVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 33433322333346888888 56777 777777 56799999986
No 246
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.89 E-value=1.4 Score=51.84 Aligned_cols=26 Identities=4% Similarity=-0.139 Sum_probs=20.1
Q ss_pred EEccCCCEEEEEeCCCeEEEEecCCC
Q 001935 438 CFSHYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 438 aFSpDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
.+...+..|.+++.||+++.|+....
T Consensus 470 ~~~t~gg~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 470 TLYTKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp CEEETTTEEEEECTTSEEEEEETTTC
T ss_pred eEEECCCEEEEEcCCCeEEEEECCCC
Confidence 34445678888999999999997653
No 247
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=94.69 E-value=0.27 Score=51.35 Aligned_cols=87 Identities=16% Similarity=0.149 Sum_probs=60.0
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
.++.|..+|.. ++.+..+..+...+.++.++++|++++.. +. |..|+ .. | ..+.++.
T Consensus 155 ~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~-l~~~d-~~-------g----------~~~~~~~ 211 (330)
T 3hxj_A 155 NDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DK-VYAIN-PD-------G----------TEKWNFY 211 (330)
T ss_dssp TTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SS-EEEEC-TT-------S----------CEEEEEC
T ss_pred CCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CE-EEEEC-CC-------C----------cEEEEEc
Confidence 45778888888 77777777666778889999999987755 44 77788 22 3 2444443
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
.+ ...|.++++.+||+ |.+++.++.+..|+
T Consensus 212 ~~--~~~~~~~~~~~~g~-l~v~t~~~gl~~~~ 241 (330)
T 3hxj_A 212 AG--YWTVTRPAISEDGT-IYVTSLDGHLYAIN 241 (330)
T ss_dssp CS--SCCCSCCEECTTSC-EEEEETTTEEEEEC
T ss_pred cC--CcceeceEECCCCe-EEEEcCCCeEEEEC
Confidence 22 23577888888875 55566777777764
No 248
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=94.64 E-value=0.18 Score=53.37 Aligned_cols=103 Identities=13% Similarity=-0.029 Sum_probs=65.4
Q ss_pred cCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEE
Q 001935 345 MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYK 424 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~ 424 (994)
....+.|..||. +++ +..+..+...+..++|+|+|+++++... +..|.+|+.. |. ...+..
T Consensus 63 d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~-~~~v~~~~~~--------g~--------~~~~~~ 123 (305)
T 3dr2_A 63 DLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHG-RRAITRSDAD--------GQ--------AHLLVG 123 (305)
T ss_dssp ETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETT-TTEEEEECTT--------SC--------EEEEEC
T ss_pred ECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECC-CCEEEEECCC--------CC--------EEEEEe
Confidence 345788999998 444 4566667778999999999997765443 4558888752 21 122222
Q ss_pred EecccccccEEEEEEccCCCEEEE----EeC-----------CCeEEEEecCCCCCC
Q 001935 425 LHRGITSATIQDICFSHYSQWIAI----VSS-----------KGTCHVFVLSPFGGD 466 (994)
Q Consensus 425 L~RG~t~a~I~sIaFSpDg~~LAs----gS~-----------dGTVhIw~I~~~gg~ 466 (994)
...+.....+.+++|++||+..++ ++. .++-.||.+++..+.
T Consensus 124 ~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~ 180 (305)
T 3dr2_A 124 RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP 180 (305)
T ss_dssp EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC
T ss_pred ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc
Confidence 122222234678999999998876 332 124677777764443
No 249
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.56 E-value=7.6 Score=43.56 Aligned_cols=48 Identities=10% Similarity=0.177 Sum_probs=44.0
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEe-cCCeEEEEeCCeEEEEECCC
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRC-SPRIVAVGLATQIYCFDALT 220 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~sV~~-S~~iLAVgl~~~I~IwDa~T 220 (994)
++++++|+.+.+.++.+.++..|.=.+| +++.|+...+..||-|++..
T Consensus 87 ~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~ 135 (365)
T 2xzh_A 87 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 135 (365)
T ss_dssp TEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEESSEEEEEESST
T ss_pred CeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEcCCcEEEEcccC
Confidence 6899999999999999999999988888 66899999999999999875
No 250
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=94.23 E-value=6.8 Score=41.66 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=47.5
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEecCCeEEEEe-CCeEEEEECCCCceeEEEee
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGL-ATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~sV~~S~~iLAVgl-~~~I~IwDa~Tle~l~tL~t 229 (994)
+++.+||.++.+.+.++.+...=+++....+.|.++. .++|+++|..|++.+.++..
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred CEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 6899999999999999998766678877777776654 45799999999998887764
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=94.12 E-value=1.7 Score=52.18 Aligned_cols=84 Identities=15% Similarity=0.263 Sum_probs=57.0
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
..+|.|..||+.+++.+.+++.+. ++....+...|.+|+.++.+|. +++||... | +.+.++
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~-l~a~d~~t-------G----------~~l~~~ 495 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQ-MHAYSADK-------G----------EALWQF 495 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSE-EEEEETTT-------C----------CEEEEE
T ss_pred CccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCccc-chhhhhhc-------C----------hhheEe
Confidence 456999999999999988887653 3444455567888888987665 99999853 4 466665
Q ss_pred ecc--cccccEEEEEEccCCC-EEEEEeC
Q 001935 426 HRG--ITSATIQDICFSHYSQ-WIAIVSS 451 (994)
Q Consensus 426 ~RG--~t~a~I~sIaFSpDg~-~LAsgS~ 451 (994)
+-+ ... .-+.+..||+ |+++++-
T Consensus 496 ~~~~~~~~---~p~~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 496 EAQSGIVA---APMTFELAGRQYVAIMAG 521 (668)
T ss_dssp ECSSCCCS---CCEEEEETTEEEEEEEEC
T ss_pred cCCCCccc---CceEEEECCEEEEEEEec
Confidence 433 221 2345567776 6766653
No 252
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.00 E-value=7.6 Score=45.10 Aligned_cols=195 Identities=13% Similarity=0.156 Sum_probs=114.0
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEe-cCCeEEEEeCCeEEEEECCCCc-eeEEEeecCCccccCCCccccccCccce
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRC-SPRIVAVGLATQIYCFDALTLE-NKFSVLTYPVPQLAGQGAVGINVGYGPM 250 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~sV~~-S~~iLAVgl~~~I~IwDa~Tle-~l~tL~t~p~p~~~~~g~~~vnv~~gpl 250 (994)
++++++|+.+.+.++.+.++..|.=.+| +++.|+...+..||-|++.... ....+.-|++ +
T Consensus 86 ~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~-----------------L 148 (494)
T 1bpo_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSS-----------------L 148 (494)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGG-----------------G
T ss_pred CeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchh-----------------c
Confidence 6899999999999999999998877776 6789999999999999986422 2222222322 0
Q ss_pred EEcccEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCCCCCCcc
Q 001935 251 AVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVS 330 (994)
Q Consensus 251 AlgpRwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~s~s~~s 330 (994)
+ +...+.|..+.-.-|. +..|+.
T Consensus 149 ~-~~QIInY~~d~~~kW~------------------------------------~l~GI~-------------------- 171 (494)
T 1bpo_A 149 A-GCQIINYRTDAKQKWL------------------------------------LLTGIS-------------------- 171 (494)
T ss_dssp T-TCEEEEEEECTTSSEE------------------------------------EEEEEE--------------------
T ss_pred c-cceEEEEEECCCCCeE------------------------------------EEEeec--------------------
Confidence 0 1233334332211110 011110
Q ss_pred CCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCC-----CEEEEEEc--CCCeEEEEeCCCCc
Q 001935 331 PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSG-----TLLVTASV--YGNNINIFRIMPSC 403 (994)
Q Consensus 331 ~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdG-----tlLATAS~--dGt~IrVwdi~p~~ 403 (994)
...+...|.+.+|..+.+ .-..|.+|...- ..|-.+| ++++.|.. .|..++|.++....
T Consensus 172 -----------~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~ 237 (494)
T 1bpo_A 172 -----------AQQNRVVGAMQLYSVDRK-VSQPIEGHAASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP 237 (494)
T ss_dssp -----------EETTEEEEEEEEEESTTC-CEEEECCSEEEE--EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCC
T ss_pred -----------ccCCcccceEEEeecccc-ccchheeeeeee--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCc
Confidence 001123578888888754 346677774322 2333333 35555654 25679999984210
Q ss_pred ccCCCCCCccccCCcceEEEEEecc--cccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCC
Q 001935 404 MRSGSGNHKYDWNSSHVHLYKLHRG--ITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFG 464 (994)
Q Consensus 404 ~~~~sG~~~~~~~~s~~~l~~L~RG--~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~g 464 (994)
.|. .+.. +....+..- ..+.--.++..|+.=..+..-+.-|.+|+|++++..
T Consensus 238 ----~~~--~~f~---kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 238 ----TGN--QPFP---KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291 (494)
T ss_dssp ----TTC--CCCC---CEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred ----cCC--CCcc---ceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce
Confidence 011 0111 122222111 112223458888888899999999999999998753
No 253
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=92.99 E-value=2.3 Score=50.25 Aligned_cols=83 Identities=22% Similarity=0.393 Sum_probs=54.8
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
..|.|..||+.+++.+.+++.+. ++..-.+.-.|.+++.++.+|+ ++.||... | +.|.+++
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~-l~A~D~~t-------G----------~~lW~~~ 524 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGY-FKAFDAKS-------G----------KELWKFQ 524 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSE-EEEEETTT-------C----------CEEEEEE
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCc-EEEEECCC-------C----------CEEEEec
Confidence 47899999999999988876543 3322222234667888888665 99999864 5 5777765
Q ss_pred cccccccEE--EEEEccCCC-EEEEEeC
Q 001935 427 RGITSATIQ--DICFSHYSQ-WIAIVSS 451 (994)
Q Consensus 427 RG~t~a~I~--sIaFSpDg~-~LAsgS~ 451 (994)
-+ +.|. -+.|..||+ ||++.+-
T Consensus 525 ~~---~g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 525 TG---SGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp CS---SCCCSCCEEEEETTEEEEEEEEC
T ss_pred CC---CCcccCceEEEECCEEEEEEEcc
Confidence 33 2222 266778886 6665544
No 254
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=92.67 E-value=8.9 Score=45.08 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=40.4
Q ss_pred CCEEEEEECCCCeEEEEEeCCC-----cEE-EEEecCCeEEEEe-------CCeEEEEECCCCceeEEEeec
Q 001935 172 PTAVRFYSFQSHCYEHVLRFRS-----SVC-MVRCSPRIVAVGL-------ATQIYCFDALTLENKFSVLTY 230 (994)
Q Consensus 172 p~tVrLWDlktge~V~tL~f~S-----~V~-sV~~S~~iLAVgl-------~~~I~IwDa~Tle~l~tL~t~ 230 (994)
++.|.-+|.++|+.+...+... .+. .-......|+++. ++.|+.||+.|++.+.++...
T Consensus 124 dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 195 (571)
T 2ad6_A 124 NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence 3678999999999988776432 121 1111234555554 468999999999999887753
No 255
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=92.18 E-value=11 Score=38.39 Aligned_cols=70 Identities=10% Similarity=0.003 Sum_probs=43.4
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEe
Q 001935 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVS 450 (994)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS 450 (994)
.-..|+|+|+|..|..+....+.|.+|++. | ..+..+..+. .....|++. +.+|.++.
T Consensus 168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~--------g----------~~~~~~~~~~--~~P~gi~~d--~~~lyva~ 225 (267)
T 1npe_A 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPA--------Q----------PGRRKVLEGL--QYPFAVTSY--GKNLYYTD 225 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT--------E----------EEEEEEEECC--CSEEEEEEE--TTEEEEEE
T ss_pred CCcEEEEcCCCCEEEEEECCCCEEEEEecC--------C----------CceEEEecCC--CCceEEEEe--CCEEEEEE
Confidence 457899999988887788767779999874 1 1122222221 224566654 55565554
Q ss_pred -CCCeEEEEecCC
Q 001935 451 -SKGTCHVFVLSP 462 (994)
Q Consensus 451 -~dGTVhIw~I~~ 462 (994)
..+.|.+++...
T Consensus 226 ~~~~~v~~~d~~~ 238 (267)
T 1npe_A 226 WKTNSVIAMDLAI 238 (267)
T ss_dssp TTTTEEEEEETTT
T ss_pred CCCCeEEEEeCCC
Confidence 457787777543
No 256
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=91.95 E-value=15 Score=39.24 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=55.1
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-CeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dG-t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
.+.|.++|+........+......-..|+++|++..|.-++... ..|.+++.. |. ....+.
T Consensus 98 ~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--------G~----------~~~~~~ 159 (316)
T 1ijq_A 98 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV----------DIYSLV 159 (316)
T ss_dssp TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC----------CEEEEE
T ss_pred CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--------CC----------CeEEEE
Confidence 45667777665433333333334558999999766666565532 446666652 31 112221
Q ss_pred cccccccEEEEEEccCCCEEEEEe-CCCeEEEEecC
Q 001935 427 RGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS-~dGTVhIw~I~ 461 (994)
.. .-.....|+|+++++.|..+- ..++|.+++++
T Consensus 160 ~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 160 TE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp CS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 11 123568999999887776554 45678888765
No 257
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=91.55 E-value=0.48 Score=57.52 Aligned_cols=111 Identities=13% Similarity=0.050 Sum_probs=61.9
Q ss_pred Ccccccccccc-ccCCCCeEEEEECCCC-cEEE-EeccCCCCeEEEEECCCCCEEEEEEcCC--C--eEEEEeCCCCccc
Q 001935 333 SVWKVGRHAGA-DMDNAGIVVVKDFVTR-AIIS-QFKAHTSPISALCFDPSGTLLVTASVYG--N--NINIFRIMPSCMR 405 (994)
Q Consensus 333 ~~~k~g~~~~a-s~s~dG~V~VwDl~s~-~~i~-~~~aHtspIsaLaFSPdGtlLATAS~dG--t--~IrVwdi~p~~~~ 405 (994)
|+++..++... .+.....|.|+|+.++ +.+. .+.. ....++|+|||+.|+..+.+. . .|.++++..
T Consensus 184 PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt---- 256 (751)
T 2xe4_A 184 PEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGK---- 256 (751)
T ss_dssp TTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTS----
T ss_pred CCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCC----
Confidence 44554443222 2223346999999998 6321 1211 134688999999888777642 2 355555521
Q ss_pred CCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC-e--EEEEecCC
Q 001935 406 SGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG-T--CHVFVLSP 462 (994)
Q Consensus 406 ~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dG-T--VhIw~I~~ 462 (994)
+. ...+.++.. .......++.|||||++|+..+.++ + |.++++..
T Consensus 257 ---~~------~~~~lv~~~---~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 257 ---LQ------SEDVCLYEE---HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp ---CG------GGCEEEEEC---CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred ---Cc------hhcEEEEec---CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 10 011344432 1223456899999999999877443 3 44445443
No 258
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=90.95 E-value=18 Score=38.16 Aligned_cols=74 Identities=12% Similarity=0.046 Sum_probs=41.3
Q ss_pred eEEEEECCCCCEEEEEEcC-------CCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE--ecccccccEEEEEEccC
Q 001935 372 ISALCFDPSGTLLVTASVY-------GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL--HRGITSATIQDICFSHY 442 (994)
Q Consensus 372 IsaLaFSPdGtlLATAS~d-------Gt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L--~RG~t~a~I~sIaFSpD 442 (994)
-..|+++++|++.++.... +..-+|+.+.+. | ..+..+ ..|.....+..+++ .+
T Consensus 231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~------G----------~~~~~~~~~~g~~~~~~~~~~~-~~ 293 (322)
T 2fp8_A 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF------G----------NILEVIPLPPPFAGEHFEQIQE-HD 293 (322)
T ss_dssp EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT------S----------CEEEEEECCTTTTTSCCCEEEE-ET
T ss_pred CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC------C----------CEEEEEECCCCCccccceEEEE-eC
Confidence 5679999999987766431 112234443332 3 233333 23322234677777 46
Q ss_pred CCEEEEEeCCCeEEEEecCC
Q 001935 443 SQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 443 g~~LAsgS~dGTVhIw~I~~ 462 (994)
++..++....+.|.+|++..
T Consensus 294 g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 294 GLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TEEEEECSSCSEEEEEEC--
T ss_pred CEEEEeecCCCceEEEeccc
Confidence 65555555678899998754
No 259
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=90.23 E-value=16 Score=43.49 Aligned_cols=23 Identities=4% Similarity=-0.201 Sum_probs=18.7
Q ss_pred cCCCEEEEEeCCCeEEEEecCCC
Q 001935 441 HYSQWIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 441 pDg~~LAsgS~dGTVhIw~I~~~ 463 (994)
-.+..|.+++.||.++.|+....
T Consensus 482 tagg~vf~gt~dg~l~A~D~~tG 504 (599)
T 1w6s_A 482 TAGDLVFYGTLDGYLKARDSDTG 504 (599)
T ss_dssp ETTTEEEEECTTSEEEEEETTTC
T ss_pred ecCCEEEEECCCCeEEEEECCCC
Confidence 36778888999999999997663
No 260
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=89.94 E-value=5.3 Score=40.93 Aligned_cols=96 Identities=7% Similarity=0.052 Sum_probs=60.5
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
..+.|.++|+........+.........|+|+|++..|..+......|.++++. |. ....+ +.
T Consensus 56 ~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~--------g~-------~~~~~--~~ 118 (267)
T 1npe_A 56 SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD--------GT-------QRRVL--FD 118 (267)
T ss_dssp TTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT--------SC-------SCEEE--EC
T ss_pred CCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC--------CC-------CEEEE--EE
Confidence 356888899876654333333334568999999877777777656678888874 21 00111 11
Q ss_pred cccccccEEEEEEccCCCEEEEEeC---CCeEEEEecC
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSS---KGTCHVFVLS 461 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~---dGTVhIw~I~ 461 (994)
.+. .....|+|+|++.+|..+.. .+.|.+++++
T Consensus 119 ~~~--~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 119 TGL--VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp SSC--SSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred CCC--CCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 221 24689999998777666554 3567777654
No 261
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=89.83 E-value=8.9 Score=45.42 Aligned_cols=50 Identities=8% Similarity=0.077 Sum_probs=30.5
Q ss_pred CEEEEEECCCCeEEEEEeCCC---cEEEEEe-cCCeEEEEeC-------CeEEEEECCCCc
Q 001935 173 TAVRFYSFQSHCYEHVLRFRS---SVCMVRC-SPRIVAVGLA-------TQIYCFDALTLE 222 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S---~V~sV~~-S~~iLAVgl~-------~~I~IwDa~Tle 222 (994)
..|.+||.++++....-..+. .-..+.+ +.+++++|.. ..+.+||..+.+
T Consensus 265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 369999999887654322222 1223444 5677777652 358888877644
No 262
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=89.49 E-value=30 Score=38.51 Aligned_cols=95 Identities=16% Similarity=0.078 Sum_probs=55.1
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcC-CCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVY-GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~d-Gt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
.+.|.+.|+........+.........|+++|.+.+|.-+... ...|.++++. |. .+.. .+.
T Consensus 180 ~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d--------G~--------~~~~-~~~ 242 (400)
T 3p5b_L 180 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV--------DIYS-LVT 242 (400)
T ss_dssp TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT--------SC--------SCEE-EEC
T ss_pred CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC--------CC--------ccEE-EEE
Confidence 3467777776554444444333446899999976666655542 2346666653 21 0111 111
Q ss_pred cccccccEEEEEEccCCCEEEEEe-CCCeEEEEecC
Q 001935 427 RGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS-~dGTVhIw~I~ 461 (994)
.+. .....|+|++++++|..+- ..++|..++++
T Consensus 243 ~~l--~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 243 ENI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp SSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCC--CceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 222 3568999999888877663 44567776653
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=89.48 E-value=29 Score=38.32 Aligned_cols=93 Identities=8% Similarity=-0.040 Sum_probs=50.1
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-CeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 001935 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (994)
Q Consensus 350 ~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dG-t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG 428 (994)
.|.+.|+........+......-..|+++|++..|.-+.... ..|..++.. |. .+.. .+..+
T Consensus 182 ~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------G~--------~~~~-~~~~~ 244 (386)
T 3v65_B 182 RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------GS--------GRRI-IADTH 244 (386)
T ss_dssp EEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC--------SCEE-EECSS
T ss_pred eEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--------CC--------CcEE-EEECC
Confidence 344444443322222233334458899999777666666544 556666642 21 0111 11122
Q ss_pred cccccEEEEEEccCCCEEEEEe-CCCeEEEEecC
Q 001935 429 ITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (994)
Q Consensus 429 ~t~a~I~sIaFSpDg~~LAsgS-~dGTVhIw~I~ 461 (994)
. .....|+|+|+++.|..+- ..+.|..++++
T Consensus 245 ~--~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 245 L--FWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp C--SCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred C--CCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 2 2468899998877776654 44566666643
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=88.34 E-value=32 Score=37.39 Aligned_cols=93 Identities=8% Similarity=-0.043 Sum_probs=52.7
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-CeEEEEeCCCCcccCCCCCCccccCCcceEEEEE-e
Q 001935 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL-H 426 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dG-t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L-~ 426 (994)
+.|.+.|+........+......-..|+++|.+..|.-+.... ..|..++.. |. ....+ .
T Consensus 138 ~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--------G~----------~~~~~~~ 199 (349)
T 3v64_C 138 SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--------GS----------GRRIIAD 199 (349)
T ss_dssp TEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC----------SCEESCC
T ss_pred CeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--------CC----------CcEEEEE
Confidence 4566666654433223333334458899999766666666544 556666652 21 11111 1
Q ss_pred cccccccEEEEEEccCCCEEEEEe-CCCeEEEEecC
Q 001935 427 RGITSATIQDICFSHYSQWIAIVS-SKGTCHVFVLS 461 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS-~dGTVhIw~I~ 461 (994)
.+. ..-..|+|+|+++.|..+- ..++|..++++
T Consensus 200 ~~~--~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 200 THL--FWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp SSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCC--CCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 121 2468899999877776654 45667777754
No 265
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=87.13 E-value=53 Score=38.61 Aligned_cols=56 Identities=9% Similarity=-0.098 Sum_probs=39.1
Q ss_pred EEEEEECCCCeEEEEEeCCCcE----------EEEEecCCeEEEE-eCCeEEEEECCCCceeEEEee
Q 001935 174 AVRFYSFQSHCYEHVLRFRSSV----------CMVRCSPRIVAVG-LATQIYCFDALTLENKFSVLT 229 (994)
Q Consensus 174 tVrLWDlktge~V~tL~f~S~V----------~sV~~S~~iLAVg-l~~~I~IwDa~Tle~l~tL~t 229 (994)
.|.-+|.++|+.+-.+...... ..+......|.++ .++.|+.+|+.|++.+.....
T Consensus 79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 4778899999998887654321 2223344555554 567899999999998877654
No 266
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=86.19 E-value=18 Score=40.67 Aligned_cols=194 Identities=11% Similarity=0.153 Sum_probs=108.1
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
..+++|+|+++++.+..+.-. .+|..=.|=.+ +.|+-.. ++.+.-|++... ..-++++..+.
T Consensus 86 g~~LQiFnletK~klks~~~~-e~VvfWkWis~-~~L~lVT--~taVyHWs~~~~--------------s~P~kvFdR~~ 147 (365)
T 2xzh_A 86 GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT--DNAVYHWSMEGE--------------SQPVKMFDRHS 147 (365)
T ss_dssp TTEEEEEETTTTEEEEEEECS-SCEEEEEECSS-SEEEEEE--SSEEEEEESSTT--------------CCCEEEEECCG
T ss_pred CCeEEEechHHhhhhcceecC-CccEEEEecCC-CeEEEEc--CCcEEEEcccCC--------------CCCceeeecch
Confidence 357999999999877666544 57777777444 3455454 356899998521 11145555444
Q ss_pred ccccccEEEEEEccCCCEEEEEeCC-------CeEEEEecCCCCCCcccccccCCCCCCccCCccCCCcccCCCCCccCc
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSK-------GTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQ 500 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~d-------GTVhIw~I~~~gg~~~~~~H~s~~~~~~~~p~~~lpw~~~ss~~~~q~ 500 (994)
-..++.|..-.-++|.+|++..+-. |.+.+|.++.. -...+..|... +.+.
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~---------------------F~~~ 205 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAAS---------------------FAQF 205 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEE---------------------EEEE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeee---------------------eEEE
Confidence 4455678889999999999887652 67889988753 33345556320 1111
Q ss_pred ccC-CCCceeeeeeeeeeecCCccccccccc--cccccCccccccceeeeecccCcccccccccccc-CccccEEEEcCC
Q 001935 501 CVL-PPPPVTLSVVSRIKYSSFGWLNTVSNA--SASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRT-NSLEHLLVYTPS 576 (994)
Q Consensus 501 ~~p-~p~~~~l~~vsrIk~~~~~w~~~v~~a--~~~at~~~~~ps~~va~~F~~~~~~~~~~~~s~~-~~~~~LlV~s~~ 576 (994)
.++ .+.+..|-..+.-+ . +| +.+.=. ....++....+.- ..++|-...+...-|+...+ ++-.=++|.+--
T Consensus 206 ~~~g~~~~~~lf~fa~r~-~-~g--~kLhIiEi~~~~~~~~~f~kk-~vdi~fppea~~DFPVamqvs~kygviyviTK~ 280 (365)
T 2xzh_A 206 KMEGNAEESTLFCFAVRG-Q-AG--GKLHIIEVGTPPTGNQPFPKK-AVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY 280 (365)
T ss_dssp CCTTCSSCEEEEEEEEEE-T-TE--EEEEEEECSSCCTTCCCCCCE-EEEECCCTTCTTCCEEEEEEETTTTEEEEEETT
T ss_pred ecCCCCCCceEEEEEEec-C-CC--cEEEEEEcCCCCCCCCCcccc-cceeeCCccccCCceEEEEecccCCEEEEEeCC
Confidence 111 11222222222111 1 11 100000 0110111122222 56777776665555543333 444568999999
Q ss_pred ccEEEEeccc
Q 001935 577 GYVVQHELLP 586 (994)
Q Consensus 577 G~l~~Y~L~p 586 (994)
|+++.|+|..
T Consensus 281 G~ihlyDleT 290 (365)
T 2xzh_A 281 GYIHLYDLET 290 (365)
T ss_dssp SEEEEEETTT
T ss_pred cEEEEEEccc
Confidence 9999999965
No 267
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=86.17 E-value=6.1 Score=45.60 Aligned_cols=109 Identities=12% Similarity=0.166 Sum_probs=69.5
Q ss_pred CCCeEEEEECCCCcEEEEeccC----CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 347 NAGIVVVKDFVTRAIISQFKAH----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~aH----tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
.+..||.-++......+.++.- -..|..|..||+|++||..+. +.|.|-.+-.... .......... ...
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~--~~V~Vv~LP~~~~----~~~~~~~~~~-~q~ 111 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND--NEIFVMEVPWGYS----NVEDVSIQDA-FQI 111 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS--SEEEEEECCTTCS----CCCCHHHHHT-TEE
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC--CeEEEEEecCccc----cCcccccccc-cce
Confidence 4567777777744333333322 236788999999999999986 5699999842210 0000000011 123
Q ss_pred EEEeccc----ccccEEEEEEccC---CCEEEEEeCCCeEEEEecCC
Q 001935 423 YKLHRGI----TSATIQDICFSHY---SQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 423 ~~L~RG~----t~a~I~sIaFSpD---g~~LAsgS~dGTVhIw~I~~ 462 (994)
+.++-|. ....|..+-|.|- +..|++-..|++|++|++..
T Consensus 112 ~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 112 FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp EEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred eEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 3343332 2457999999995 46899999999999999986
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=85.96 E-value=4.4 Score=42.82 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=49.2
Q ss_pred CcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEE
Q 001935 359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC 438 (994)
Q Consensus 359 ~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIa 438 (994)
.+++.+|..+ .....++|+|+|+++++-.. +..|..|+.. | .....+.. ...+..|+
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~-~~~I~~~d~~--------g----------~~~~~~~~---~~~p~gia 78 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHE-VGEIVSITPD--------G----------NQQIHATV---EGKVSGLA 78 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETT-TTEEEEECTT--------C----------CEEEEEEC---SSEEEEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCC-CCeEEEECCC--------C----------ceEEEEeC---CCCceeEE
Confidence 4456677654 34578999999997776544 4547777642 2 12222221 23588999
Q ss_pred EccCCCEEEEEeCCCeEEEEecCC
Q 001935 439 FSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 439 FSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
|++||+.+++.......+|+.+.+
T Consensus 79 ~~~dG~l~vad~~~~~~~v~~~d~ 102 (306)
T 2p4o_A 79 FTSNGDLVATGWNADSIPVVSLVK 102 (306)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEEC
T ss_pred EcCCCcEEEEeccCCcceEEEEcC
Confidence 999999766654433434554433
No 269
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=85.39 E-value=19 Score=41.88 Aligned_cols=195 Identities=11% Similarity=0.151 Sum_probs=106.9
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEE-CCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCF-DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaF-SPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
..+++|+|++++..+..+.-.. +|..=.| |++ .|+-.. ++.|.-|++... ..-++++..+
T Consensus 85 g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~--~l~lVT--~taVyHWsi~~~--------------s~P~kvFdR~ 145 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN--TVALVT--DNAVYHWSMEGE--------------SQPVKMFDRH 145 (494)
T ss_dssp TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT--EEEEEC--SSEEEEEESSSS--------------CCCEEEEECC
T ss_pred CCeEEEEchHHhhhhcceecCC-CceEEEecCCC--eEEEEc--CCeeEEecccCC--------------CCchhheecc
Confidence 4579999999998776665443 5555555 444 454444 356899998521 0114555544
Q ss_pred cccccccEEEEEEccCCCEEEEEeC-------CCeEEEEecCCCCCCcccccccCCCCCCccCCccCCCcccCCCCCccC
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSS-------KGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQ 499 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~-------dGTVhIw~I~~~gg~~~~~~H~s~~~~~~~~p~~~lpw~~~ss~~~~q 499 (994)
.-..++.|..-.-++|.+|++..+- .|.+.+|.++.. -...+..|... +.+
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~---------------------F~~ 203 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAAS---------------------FAQ 203 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEE---------------------EEE
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeee---------------------eEE
Confidence 4445567888999999999997654 367889998763 33445566321 111
Q ss_pred cccC-CCCceeeeeeeeeeecCCccccccccccccccCccccccceeeeecccCcccccccccccc-CccccEEEEcCCc
Q 001935 500 QCVL-PPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRT-NSLEHLLVYTPSG 577 (994)
Q Consensus 500 ~~~p-~p~~~~l~~vsrIk~~~~~w~~~v~~a~~~at~~~~~ps~~va~~F~~~~~~~~~~~~s~~-~~~~~LlV~s~~G 577 (994)
..++ .+.+.+|-..+. |.. +|..=.+-.-....++...++- ...++|-...+...-|+...+ ++-.=++|.+--|
T Consensus 204 ~~~~g~~~~~~lf~fa~-r~~-~g~kLhi~Ei~~~~~~~~~f~k-k~vdv~fppe~~~DFPvamqvs~kygviyviTK~G 280 (494)
T 1bpo_A 204 FKMEGNAEESTLFCFAV-RGQ-AGGKLHIIEVGTPPTGNQPFPK-KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYG 280 (494)
T ss_dssp EECTTCSSEEEEEEEEE-CST-TCCEEEEEECSCCCTTCCCCCC-EEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTS
T ss_pred EecCCCCCCceEEEEEE-ecC-CCcEEEEEEcCCCccCCCCccc-eeeeeeCCcccccCceeEEEecccCCEEEEEecCc
Confidence 1111 111222222111 111 1110000000011011112222 256777777665555544433 4445689999999
Q ss_pred cEEEEeccc
Q 001935 578 YVVQHELLP 586 (994)
Q Consensus 578 ~l~~Y~L~p 586 (994)
+++.|+|..
T Consensus 281 ~i~lyDleT 289 (494)
T 1bpo_A 281 YIHLYDLET 289 (494)
T ss_dssp EEEEEETTT
T ss_pred eEEEEeccc
Confidence 999999965
No 270
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=84.93 E-value=38 Score=43.48 Aligned_cols=95 Identities=9% Similarity=0.112 Sum_probs=59.0
Q ss_pred CeEEEEECCCCcEEE-EeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 349 GIVVVKDFVTRAIIS-QFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 349 G~V~VwDl~s~~~i~-~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
.+|+|||+...+.+. ....+. .|..+...-.|.+++.|+.... |.++...+. . ..+..+-|
T Consensus 904 ~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~vgD~~~S-v~~~~y~~~------~----------~~L~~~a~ 965 (1158)
T 3ei3_A 904 STVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFILVGDLMRS-VLLLAYKPM------E----------GNFEEIAR 965 (1158)
T ss_dssp TEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEEEEESSBC-EEEEEEETT------T----------TEEEEEEE
T ss_pred CEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEEEEEEhhhe-EEEEEEEcC------C----------CeEEEEEe
Confidence 356777776554322 111121 2334444446778888887543 555443221 0 26777777
Q ss_pred ccccccEEEEEEccCCCEEEEEeCCCeEEEEecCC
Q 001935 428 GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 428 G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~ 462 (994)
-....++.++.|=.|+ .++.+-.+|.++|+..++
T Consensus 966 D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 966 DFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp CCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred ecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 7666789999997665 666788999999999877
No 271
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=83.48 E-value=27 Score=44.91 Aligned_cols=92 Identities=17% Similarity=0.212 Sum_probs=61.5
Q ss_pred CeEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec
Q 001935 349 GIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR 427 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aH-tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R 427 (994)
..|++.+...+..+..+++. ...|.+.+.+. .+++.|+ |..|.+|++.. + .+.+..+
T Consensus 492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~--g~~l~~fel~~-------~-----------~L~~~~~ 549 (1158)
T 3ei3_A 492 ASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV--GRALYYLQIHP-------Q-----------ELRQISH 549 (1158)
T ss_dssp SCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE--TTEEEEEEEET-------T-----------EEEEEEE
T ss_pred CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE--CCEEEEEEeeC-------C-----------ceeeecc
Confidence 34667777666667677653 34688777764 4666665 55678888743 2 1222222
Q ss_pred ccccccEEEEEEccC------CCEEEEEeC-CCeEEEEecCC
Q 001935 428 GITSATIQDICFSHY------SQWIAIVSS-KGTCHVFVLSP 462 (994)
Q Consensus 428 G~t~a~I~sIaFSpD------g~~LAsgS~-dGTVhIw~I~~ 462 (994)
-.-...|.|+++.|. ++++|+|.. |+|++|+.++.
T Consensus 550 ~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 550 TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 122357999999864 579999996 99999999964
No 272
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=82.68 E-value=1e+02 Score=37.99 Aligned_cols=95 Identities=18% Similarity=0.102 Sum_probs=56.0
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-CeEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dG-t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
..+.|.+.|+........+.........|+++|.+.+|.-+.... ..|.++++. |. ....+
T Consensus 491 ~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d--------G~----------~~~~l 552 (791)
T 3m0c_C 491 VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV----------DIYSL 552 (791)
T ss_dssp TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------SC----------CEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC--------CC----------ceEEE
Confidence 345778888876554444444445578999999866666666422 446666653 31 12222
Q ss_pred ecccccccEEEEEEccCCCEEEEEeC-CCeEEEEec
Q 001935 426 HRGITSATIQDICFSHYSQWIAIVSS-KGTCHVFVL 460 (994)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~LAsgS~-dGTVhIw~I 460 (994)
..+ .-.....|++++++++|..+-. ..+|.++++
T Consensus 553 v~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~ 587 (791)
T 3m0c_C 553 VTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 587 (791)
T ss_dssp ECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EeC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 211 1135789999988887776643 345555554
No 273
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=81.88 E-value=4.7 Score=45.05 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=60.0
Q ss_pred CCeEEEEECCCC-c---EEEEeccC-CCCeEEEEECCCCCEEEEEEcC--------------CCeEEEEeCCCCcccCCC
Q 001935 348 AGIVVVKDFVTR-A---IISQFKAH-TSPISALCFDPSGTLLVTASVY--------------GNNINIFRIMPSCMRSGS 408 (994)
Q Consensus 348 dG~V~VwDl~s~-~---~i~~~~aH-tspIsaLaFSPdGtlLATAS~d--------------Gt~IrVwdi~p~~~~~~s 408 (994)
...|.||++... . .+..+.+. -...+.++++++|++.+|.... ...=+||.+.+
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~------- 210 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP------- 210 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-------
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-------
Confidence 456777776543 2 23444432 2357899999999999987621 01135666543
Q ss_pred CCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE-eCCCeEEEEecCCCC
Q 001935 409 GNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLSPFG 464 (994)
Q Consensus 409 G~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsg-S~dGTVhIw~I~~~g 464 (994)
+ .+..+..+.. .-+.|+||||+++|.++ +..++|++|++...+
T Consensus 211 ~-----------~~~~~~~~l~--~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g 254 (355)
T 3sre_A 211 N-----------DVRVVAEGFD--FANGINISPDGKYVYIAELLAHKIHVYEKHANW 254 (355)
T ss_dssp T-----------CCEEEEEEES--SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred C-----------eEEEeecCCc--ccCcceECCCCCEEEEEeCCCCeEEEEEECCCC
Confidence 1 0112223332 34789999999887665 457899999997643
No 274
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=81.86 E-value=11 Score=49.39 Aligned_cols=48 Identities=10% Similarity=0.177 Sum_probs=43.3
Q ss_pred CEEEEEECCCCeEEEEEeCCCcEEEEEe-cCCeEEEEeCCeEEEEECCC
Q 001935 173 TAVRFYSFQSHCYEHVLRFRSSVCMVRC-SPRIVAVGLATQIYCFDALT 220 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S~V~sV~~-S~~iLAVgl~~~I~IwDa~T 220 (994)
++++|+|+.+.+.++...++.+|.=.+| +++.|+...+..|+-|++..
T Consensus 86 ~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~ 134 (1630)
T 1xi4_A 86 KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEG 134 (1630)
T ss_pred CeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCC
Confidence 6899999999999999999999988887 67899999999999999864
No 275
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=81.40 E-value=36 Score=38.25 Aligned_cols=72 Identities=14% Similarity=0.084 Sum_probs=43.5
Q ss_pred eEEEEECC-CCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEE-E
Q 001935 372 ISALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAI-V 449 (994)
Q Consensus 372 IsaLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAs-g 449 (994)
...++++| +|.++++ ......|.+|+... + ....+..+ + ....-..|+|+||+++|.+ -
T Consensus 228 p~giavdp~~g~lyv~-d~~~~~V~~~~~~~-------~--------~~~~~~~~--~-~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 228 CNGAETHPINGELYFN-SWNAGQVFRYDFTT-------Q--------ETTPLFTI--Q-DSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp CCCEEECTTTCCEEEE-ETTTTEEEEEETTT-------T--------EEEEEEEC--S-SSSCCEEEEECTTSSEEEEEE
T ss_pred ceEEEEeCCCCEEEEE-ECCCCEEEEEECCC-------C--------cEEEEEEc--C-CCCcceeEEEcCCCCEEEEEE
Confidence 35688999 7776665 44355577887632 1 00122222 1 1124578999999996555 4
Q ss_pred eCCCeEEEEecCC
Q 001935 450 SSKGTCHVFVLSP 462 (994)
Q Consensus 450 S~dGTVhIw~I~~ 462 (994)
...+.|++|+.+.
T Consensus 289 ~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 289 VNQHYILRSDYDW 301 (430)
T ss_dssp TTTTEEEEEEEET
T ss_pred CCCCEEEEEeCCc
Confidence 5667888887653
No 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=80.66 E-value=67 Score=36.06 Aligned_cols=54 Identities=26% Similarity=0.219 Sum_probs=36.0
Q ss_pred CCCeEEEEECCCCcEEEEeccC-CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCC
Q 001935 347 NAGIVVVKDFVTRAIISQFKAH-TSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~aH-tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (994)
..+.|..+|..++.....+... ...-..|+|+|+|++|..+....+.|.+|+..
T Consensus 246 ~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 246 NAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 3467888888766542222211 12346899999999777777777878888763
No 277
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=80.65 E-value=80 Score=35.53 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=35.9
Q ss_pred CCCeEEEEECCCCcEEEEe-ccCCCC-eEEEEECCCCCEEEEEEcCCCeEEEEeCC
Q 001935 347 NAGIVVVKDFVTRAIISQF-KAHTSP-ISALCFDPSGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~-~aHtsp-IsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (994)
..+.|..+|..++.....+ .....+ -..|+|+|+|+.|..+....+.|++++..
T Consensus 248 ~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 248 HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 3567888888766653232 222222 24699999999777777767778888764
No 278
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=80.60 E-value=97 Score=36.74 Aligned_cols=56 Identities=9% Similarity=-0.050 Sum_probs=38.0
Q ss_pred CEEEEEEC-CCCeEEEEEeCCCc------------EEEEEe--cCCe----EEEE-eCCeEEEEECCCCceeEEEe
Q 001935 173 TAVRFYSF-QSHCYEHVLRFRSS------------VCMVRC--SPRI----VAVG-LATQIYCFDALTLENKFSVL 228 (994)
Q Consensus 173 ~tVrLWDl-ktge~V~tL~f~S~------------V~sV~~--S~~i----LAVg-l~~~I~IwDa~Tle~l~tL~ 228 (994)
+.|.-+|. ++|+.+-.++.... ...+.. .... |.++ .++.|+.+|+.|++.+....
T Consensus 73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~ 148 (599)
T 1w6s_A 73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVE 148 (599)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeec
Confidence 46777899 89999888765421 123344 2322 5554 56789999999999887654
No 279
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=80.42 E-value=22 Score=37.48 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=51.9
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
...|.|..||..+++....... ...-..|+|+|+|++|..+......|.+|++.... .+ ....+..+
T Consensus 162 ~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~----~~--------~~~~~~~~ 228 (322)
T 2fp8_A 162 DKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK----KG--------TAEVLVKI 228 (322)
T ss_dssp CCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT----TT--------CEEEEEEC
T ss_pred CCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCc----CC--------ccceEEeC
Confidence 3457888899877754322221 12235699999999776665545668999875210 01 11111121
Q ss_pred ecccccccEEEEEEccCCCEEEEEeC
Q 001935 426 HRGITSATIQDICFSHYSQWIAIVSS 451 (994)
Q Consensus 426 ~RG~t~a~I~sIaFSpDg~~LAsgS~ 451 (994)
.. ...|++.+||+..++...
T Consensus 229 -----~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 229 -----PN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp -----SS-EEEEEECTTSCEEEEEEE
T ss_pred -----CC-CCCeEECCCCCEEEEecC
Confidence 12 678999999986655543
No 280
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=79.72 E-value=7.2 Score=43.43 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=65.8
Q ss_pred CCCeEEEEECC---CCcEEEEe--ccCC-----------CCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCC
Q 001935 347 NAGIVVVKDFV---TRAIISQF--KAHT-----------SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410 (994)
Q Consensus 347 ~dG~V~VwDl~---s~~~i~~~--~aHt-----------spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~ 410 (994)
.+..|..||+. +++.+..+ .+.. .....|+.+++|+.-+|.+..-. .||.+.|. |.
T Consensus 98 g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~--~I~rV~pd------G~ 169 (334)
T 2p9w_A 98 GASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP--AIARVSAD------GK 169 (334)
T ss_dssp SCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSC--EEEEECTT------SC
T ss_pred CCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCC--eEEEEeCC------CC
Confidence 46678899998 67655333 3322 24789999999999999998304 36666553 31
Q ss_pred CccccCCcceEEEEEec--ccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 411 HKYDWNSSHVHLYKLHR--GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 411 ~~~~~~~s~~~l~~L~R--G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
. ....-+.. +.+......|+|.|||+.|++....|.+..|++.
T Consensus 170 -------~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 170 -------T-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp -------C-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred -------E-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 0 11111222 2222336689999999999998778989888887
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=79.01 E-value=2.1 Score=51.86 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=42.9
Q ss_pred cCCC-CeEEEEEC-CCCCEEEEEEcC-C---CeEEEEeCCCCcccCCCC-CCccccCCcceEEEEEecccccccEEEEEE
Q 001935 367 AHTS-PISALCFD-PSGTLLVTASVY-G---NNINIFRIMPSCMRSGSG-NHKYDWNSSHVHLYKLHRGITSATIQDICF 439 (994)
Q Consensus 367 aHts-pIsaLaFS-PdGtlLATAS~d-G---t~IrVwdi~p~~~~~~sG-~~~~~~~~s~~~l~~L~RG~t~a~I~sIaF 439 (994)
+|.- .+...+|| |||++||-+... | ..|+|+++.. | .. .. .. +.. ...+++|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~-------g~~~---l~---~~---~~~-----~~~~~~W 228 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISD-------PSQT---IA---DK---VSG-----TNGEIVW 228 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTC-------TTCC---CC---CC---EEE-----ECSCCEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCC-------CCEe---CC---cc---ccC-----ceeeEEE
Confidence 3443 68899999 999998865543 3 2589999853 2 10 00 01 111 1246899
Q ss_pred ccCCCEEEEEeCCC
Q 001935 440 SHYSQWIAIVSSKG 453 (994)
Q Consensus 440 SpDg~~LAsgS~dG 453 (994)
||||+.|+..+.+.
T Consensus 229 spDg~~l~y~~~d~ 242 (751)
T 2xe4_A 229 GPDHTSLFYVTKDE 242 (751)
T ss_dssp CSSTTEEEEEEECT
T ss_pred ecCCCEEEEEEECC
Confidence 99999999988763
No 282
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=78.86 E-value=22 Score=37.71 Aligned_cols=101 Identities=10% Similarity=0.195 Sum_probs=70.0
Q ss_pred cCCCCeEEEEECCCCcEEEEecc-CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 001935 345 MDNAGIVVVKDFVTRAIISQFKA-HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~~~i~~~~a-HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~ 423 (994)
.+.++.|...|.. ++++..+.- -......|++.++|.+++ ++++.+.+.+|++... + ....+.
T Consensus 45 ~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~v-s~E~~~~l~~~~v~~~------~--------~i~~~~ 108 (255)
T 3qqz_A 45 INKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVI-SDERDYAIYVISLTPN------S--------EVKILK 108 (255)
T ss_dssp EETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEE-EETTTTEEEEEEECTT------C--------CEEEEE
T ss_pred ECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEE-EECCCCcEEEEEcCCC------C--------eeeeee
Confidence 3457889999998 888877743 224678899999997655 4665667889988532 1 011122
Q ss_pred EEe----cccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 424 KLH----RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 424 ~L~----RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
+.. ....+...-.|+|+|+++.|.++..+....||.++
T Consensus 109 ~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 109 KIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp EEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred eeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 221 12234557899999999999999999888888876
No 283
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=77.51 E-value=13 Score=39.20 Aligned_cols=83 Identities=13% Similarity=0.138 Sum_probs=50.4
Q ss_pred CCCeEEEEECCC-Cc-----EEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcce
Q 001935 347 NAGIVVVKDFVT-RA-----IISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV 420 (994)
Q Consensus 347 ~dG~V~VwDl~s-~~-----~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~ 420 (994)
..+.|.++|+.. ++ ....+ .....|+++++|++.++... +..|.+|+.. | .
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~-~~~V~~~~~~--------G----------~ 243 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGATHI-YNSVVRIAPD--------R----------S 243 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEECBT-TCCEEEECTT--------C----------C
T ss_pred CCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEeCC-CCeEEEECCC--------C----------C
Confidence 456788888764 22 22222 22356999999998765554 4447888742 3 1
Q ss_pred EEEEEeccccc-ccEEEEEEc---cCCCEEEEEeCCC
Q 001935 421 HLYKLHRGITS-ATIQDICFS---HYSQWIAIVSSKG 453 (994)
Q Consensus 421 ~l~~L~RG~t~-a~I~sIaFS---pDg~~LAsgS~dG 453 (994)
. ..+.+-... ....+++|. ||+++|.+++..+
T Consensus 244 ~-~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 244 T-TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp E-EEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred E-EEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 2 122111122 358999999 8999888877654
No 284
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=76.70 E-value=1.3e+02 Score=35.92 Aligned_cols=94 Identities=14% Similarity=0.129 Sum_probs=56.4
Q ss_pred CCCeEEEEECCCCcEEEEecc--------CCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCc
Q 001935 347 NAGIVVVKDFVTRAIISQFKA--------HTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSS 418 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~a--------HtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s 418 (994)
.+|-|..||..+++....... ....|.+|+.+++|++|..|+.++ -|.+|+... +
T Consensus 375 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~-Gl~~~d~~~-------~--------- 437 (795)
T 4a2l_A 375 NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAG-GLSILHRNS-------G--------- 437 (795)
T ss_dssp SSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTT-EEEEEETTT-------C---------
T ss_pred CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcC-ceeEEeCCC-------C---------
Confidence 455678888877654332211 235799999999999444455533 488888642 2
Q ss_pred ceEEEEEec---ccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 419 HVHLYKLHR---GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 419 ~~~l~~L~R---G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
....+.. +.....|++|...++|+..+. +.+| +.+|+..
T Consensus 438 --~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~G-l~~~~~~ 479 (795)
T 4a2l_A 438 --QVENFNQRNSQLVNENVYAILPDGEGNLWLG-TLSA-LVRFNPE 479 (795)
T ss_dssp --CEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ESSC-EEEEETT
T ss_pred --cEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ecCc-eeEEeCC
Confidence 1222221 122346999999998884443 3444 6677743
No 285
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=75.41 E-value=16 Score=44.05 Aligned_cols=53 Identities=9% Similarity=-0.038 Sum_probs=32.6
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCC
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (994)
.+.|.++++........+...-..-..|+|+|++..|..+....+.|.++++.
T Consensus 518 ~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 518 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp SCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred CCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 36677776654322122222222345799999887777777767778888873
No 286
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=74.50 E-value=1.5e+02 Score=35.46 Aligned_cols=92 Identities=12% Similarity=0.058 Sum_probs=57.4
Q ss_pred CCCeEEEEECCCCcEEEEec----cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 347 NAGIVVVKDFVTRAIISQFK----AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~----aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
.++-+.++|..+++...... .+...|.+|..+++|++.+... .| +.+|+... + ..
T Consensus 425 ~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G--l~~~~~~~-------~-----------~~ 483 (795)
T 4a2l_A 425 HAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA--LVRFNPEQ-------R-----------SF 483 (795)
T ss_dssp TTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SC--EEEEETTT-------T-----------EE
T ss_pred CcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc--eeEEeCCC-------C-----------eE
Confidence 44568889988776433221 2346799999999999877554 33 77888642 1 12
Q ss_pred EEEec-----ccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 423 YKLHR-----GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 423 ~~L~R-----G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
..+.. +.....|.+|...++|+..+.+ .. -+.+|+..
T Consensus 484 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~ 525 (795)
T 4a2l_A 484 TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-EE-GLSVFKQE 525 (795)
T ss_dssp EECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-SS-CEEEEEEE
T ss_pred EEccccccccccCCceEEEEEECCCCCEEEEe-CC-ceEEEeCC
Confidence 22211 2233569999999998755444 44 46677654
No 287
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=74.43 E-value=92 Score=32.94 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=49.5
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccccc-----ccEEEEEEccCCC
Q 001935 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITS-----ATIQDICFSHYSQ 444 (994)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~-----a~I~sIaFSpDg~ 444 (994)
..+++|+|+|.-..|..-|...+.+-++|.. | .....+.|.+|... ..--.|+|.++|+
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--------g--------~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLV--------G--------EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTT--------C--------CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCC--------C--------CEEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 4578999998766666667668878888863 3 12455667666422 2457899999997
Q ss_pred EEEEEeCCCeEEEEe
Q 001935 445 WIAIVSSKGTCHVFV 459 (994)
Q Consensus 445 ~LAsgS~dGTVhIw~ 459 (994)
|.++|.-.-+.+|.
T Consensus 237 -lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 237 -IYIVSEPNRFYRFT 250 (255)
T ss_dssp -EEEEETTTEEEEEE
T ss_pred -EEEEcCCceEEEEE
Confidence 66667777555553
No 288
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=72.95 E-value=99 Score=36.05 Aligned_cols=29 Identities=7% Similarity=-0.020 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEeC
Q 001935 371 PISALCFDPSGTLLVTASVYGNNINIFRI 399 (994)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (994)
.-..|+|+|+|++|..+....+.|+.++.
T Consensus 311 ~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 311 WEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 34789999999987778887887888665
No 289
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=72.31 E-value=1.2e+02 Score=33.67 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=42.1
Q ss_pred CeEEEEECCCCCEEEEEEc-------------CCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEE
Q 001935 371 PISALCFDPSGTLLVTASV-------------YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDI 437 (994)
Q Consensus 371 pIsaLaFSPdGtlLATAS~-------------dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sI 437 (994)
.-..|+|+|||.|.++.+. .|+ ||++.+. |..-.+..-....+| -.|+.+ .+.|
T Consensus 141 ~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~---IlRi~~d------G~ip~~nPf~~~~i~--a~G~RN--p~Gl 207 (347)
T 3das_A 141 NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGK---ILRMTPD------GEPAPGNPFPGSPVY--SYGHRN--VQGL 207 (347)
T ss_dssp CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTC---EEEECTT------SSBCTTCSSTTCCEE--EBCCSB--CCEE
T ss_pred cCccccCCCCCCEEEEECCCCCCccccCCCCCCCE---EEEEeCC------CCccCCCCCCCCeEE--eeCCCC--cceE
Confidence 3467999999999888653 243 4555443 210000000011233 356543 5889
Q ss_pred EEccCCCEEEEE-eCCCeEEEEecC
Q 001935 438 CFSHYSQWIAIV-SSKGTCHVFVLS 461 (994)
Q Consensus 438 aFSpDg~~LAsg-S~dGTVhIw~I~ 461 (994)
+|.|+|+..++= +.++--.|-.|.
T Consensus 208 a~dp~G~L~~~d~g~~~~deln~i~ 232 (347)
T 3das_A 208 AWDDKQRLFASEFGQDTWDELNAIK 232 (347)
T ss_dssp EECTTCCEEEEECCSSSCEEEEEEC
T ss_pred EECCCCCEEEEecCCCCCceeeEEc
Confidence 999998766553 333334444443
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=69.56 E-value=1.2e+02 Score=32.38 Aligned_cols=95 Identities=13% Similarity=0.042 Sum_probs=52.4
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEc-CCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASV-YGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~-dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
.+.|.++|+........+......-..|+++|.+.+|.-+.. ....|..++.. |. .+.. .+.
T Consensus 100 ~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--------G~--------~~~~-~~~ 162 (318)
T 3sov_A 100 TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--------GS--------SRFI-IIN 162 (318)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--------SC--------SCEE-EEC
T ss_pred CCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--------CC--------CeEE-EEE
Confidence 346667776644322223233344578999997666665654 23445555542 21 0111 111
Q ss_pred cccccccEEEEEEccCCCEEEEE-eCCCeEEEEecC
Q 001935 427 RGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLS 461 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsg-S~dGTVhIw~I~ 461 (994)
.+. ..-..|+|+++++.|..+ +..+.|..++++
T Consensus 163 ~~l--~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 163 SEI--YWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp SSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCC--CCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 222 245889999987777665 445667777754
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=69.19 E-value=18 Score=40.57 Aligned_cols=99 Identities=15% Similarity=0.254 Sum_probs=63.5
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCCCeEEEEECC----CCCE--EEEEEcCC---CeEEEEeCCCCcccCCCCCCccccC
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAHTSPISALCFDP----SGTL--LVTASVYG---NNINIFRIMPSCMRSGSGNHKYDWN 416 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSP----dGtl--LATAS~dG---t~IrVwdi~p~~~~~~sG~~~~~~~ 416 (994)
...+-+.|||+ +++.+..+.. ..++.+..=| .|+. ||.++..+ ..|+||++.|.. +
T Consensus 47 ~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~-----~------- 111 (355)
T 3amr_A 47 NKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN-----G------- 111 (355)
T ss_dssp ETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT-----C-------
T ss_pred cCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC-----C-------
Confidence 34578999999 7888888864 4456555555 2332 55566544 679999986530 1
Q ss_pred CcceEEEEEecc--c--cc-ccEEEEEE--ccC-CC-EEEEEeCCCeEEEEecCCC
Q 001935 417 SSHVHLYKLHRG--I--TS-ATIQDICF--SHY-SQ-WIAIVSSKGTCHVFVLSPF 463 (994)
Q Consensus 417 ~s~~~l~~L~RG--~--t~-a~I~sIaF--SpD-g~-~LAsgS~dGTVhIw~I~~~ 463 (994)
.+..+-+. . +. ..++.||+ +|+ ++ ++.+...+|.+..|.|...
T Consensus 112 ----~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~ 163 (355)
T 3amr_A 112 ----TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKAD 163 (355)
T ss_dssp ----CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEEC
T ss_pred ----ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeC
Confidence 23333111 0 11 35677888 775 44 7888889999999999653
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=69.15 E-value=1.6e+02 Score=34.84 Aligned_cols=178 Identities=11% Similarity=-0.007 Sum_probs=0.0
Q ss_pred CEEEEEECCCC--eEEEEEeCCCcEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEeecCCccccCCCccccccC
Q 001935 173 TAVRFYSFQSH--CYEHVLRFRSSVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (994)
Q Consensus 173 ~tVrLWDlktg--e~V~tL~f~S~V~sV~~S~--~iLAVgl--~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~ 246 (994)
+.|+..|+... +....+.--..+.+|++++ +.|.++. .++|+.+++.......++...... .
T Consensus 18 ~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~------------~ 85 (619)
T 3s94_A 18 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL------------S 85 (619)
T ss_dssp SBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCS------------C
T ss_pred ccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCC------------C
Q ss_pred ccceEEcc--cEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCC
Q 001935 247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (994)
Q Consensus 247 ~gplAlgp--RwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~ 324 (994)
..-+|+.. +.|-++.
T Consensus 86 P~GlAvD~~~~~ly~~d--------------------------------------------------------------- 102 (619)
T 3s94_A 86 PDGLACDWLGEKLYWTD--------------------------------------------------------------- 102 (619)
T ss_dssp EEEEEEETTTTEEEEEE---------------------------------------------------------------
T ss_pred cCeEEEEecCCEEEEEe---------------------------------------------------------------
Q ss_pred CCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcc
Q 001935 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 404 (994)
Q Consensus 325 s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~ 404 (994)
...+.|.+.|+........+......-..|+++|.+.+|.-++. |..-+||.....
T Consensus 103 ---------------------~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~-g~~~~I~r~~~d-- 158 (619)
T 3s94_A 103 ---------------------SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW-GEVPKIERAGMD-- 158 (619)
T ss_dssp ---------------------TTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEEC-SSSCEEEEEETT--
T ss_pred ---------------------CCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEecc-CCCCEEEEEECC--
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCC
Q 001935 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGG 465 (994)
Q Consensus 405 ~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg 465 (994)
| .....+-.. .-.....|+++++++.|..+ +.+.-+||.++..|.
T Consensus 159 ----G----------~~~~~l~~~-~~~~P~Glald~~~~~LY~a-D~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 159 ----G----------SSRFIIINS-EIYWPNGLTLDYEEQKLYWA-DAKLNFIHKSNLDGT 203 (619)
T ss_dssp ----S----------CSCEEEECS-SCSSEEEEEEETTTTEEEEE-ETTTCCEEEESSSCC
T ss_pred ----C----------CceEEEEeC-CCCCCcEEEEEccCCEEEEE-eCCCCeEEEecCCCC
No 293
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=67.86 E-value=17 Score=43.06 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=60.0
Q ss_pred eEEEEECCCCcE--EEEec-cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEE-
Q 001935 350 IVVVKDFVTRAI--ISQFK-AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL- 425 (994)
Q Consensus 350 ~V~VwDl~s~~~--i~~~~-aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L- 425 (994)
.+.+||..+++. +..+. .+..-..++++.++|++++.++.++..+.+||.... .|. .+-.+
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~-----------~W~----~~~~~~ 284 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD-----------SWI----PGPDMQ 284 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT-----------EEE----ECCCCS
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCC-----------cee----ECCCCC
Confidence 588999988752 22332 244445578899999999999976777999997531 121 11111
Q ss_pred -ecccccccEEEEEEccCCCEEEEEe-CC-----CeEEEEecCC
Q 001935 426 -HRGITSATIQDICFSHYSQWIAIVS-SK-----GTCHVFVLSP 462 (994)
Q Consensus 426 -~RG~t~a~I~sIaFSpDg~~LAsgS-~d-----GTVhIw~I~~ 462 (994)
.|.. ..+++-+|++.++.|+ .+ .++.+|+...
T Consensus 285 ~~R~~-----~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 285 VARGY-----QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp SCCSS-----CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ccccc-----cceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 1111 2355667999999998 34 4688888654
No 294
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=67.02 E-value=13 Score=44.30 Aligned_cols=61 Identities=20% Similarity=0.319 Sum_probs=41.6
Q ss_pred EEEEECCCCCEEEEEEcCCC---------eEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCC
Q 001935 373 SALCFDPSGTLLVTASVYGN---------NINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYS 443 (994)
Q Consensus 373 saLaFSPdGtlLATAS~dGt---------~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg 443 (994)
--|+|+|+|.|++.-+..+. +-.+|-..+. +| .++.|.++...+.++.++|+||+
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~-----~g-----------~~~rf~~~P~gaE~TG~~fspDg 542 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPA-----TG-----------EIRRFMVGPIGCEVTGISFSPDQ 542 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTT-----TC-----------CEEEEEECCTTCEEEEEEECTTS
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCC-----CC-----------eEEEEEeCCCCccCcCeeECCCC
Confidence 35999999998875543211 1133433221 12 57788888888999999999999
Q ss_pred CEEEEE
Q 001935 444 QWIAIV 449 (994)
Q Consensus 444 ~~LAsg 449 (994)
++|.+.
T Consensus 543 ~tlfvn 548 (592)
T 3zwu_A 543 KTLFVG 548 (592)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 887664
No 295
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=61.94 E-value=82 Score=35.53 Aligned_cols=109 Identities=10% Similarity=0.159 Sum_probs=65.5
Q ss_pred CeEEEEECCCC--cEEEEecc------CCCCeEEEEEC---CC----CCEEEEEEcCCCeEEEEeCCCCcccCCCCCCcc
Q 001935 349 GIVVVKDFVTR--AIISQFKA------HTSPISALCFD---PS----GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKY 413 (994)
Q Consensus 349 G~V~VwDl~s~--~~i~~~~a------HtspIsaLaFS---Pd----GtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~ 413 (994)
-.+.+||+.+. ++++++.- ..+-+..|+++ |+ +.+..-++..+.-|-|+|+...-.-.-.. .+.
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~-~~~ 201 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTH-PTF 201 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEEC-GGG
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEcc-CCC
Confidence 47899999999 88877653 24568999999 33 46666677666779999986420000000 000
Q ss_pred ccCCcceEEEEEecccc---cccEEEEEEccC----CCEEEEEeCCCeEEEEecCC
Q 001935 414 DWNSSHVHLYKLHRGIT---SATIQDICFSHY----SQWIAIVSSKGTCHVFVLSP 462 (994)
Q Consensus 414 ~~~~s~~~l~~L~RG~t---~a~I~sIaFSpD----g~~LAsgS~dGTVhIw~I~~ 462 (994)
.......+.. .|.. ...|..|+.||| +++|--....++ ++|.|.+
T Consensus 202 --~pd~~~~~~i-~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T 253 (381)
T 3q6k_A 202 --KAERPTKFDY-GGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNT 253 (381)
T ss_dssp --SCCSCEEEEE-TTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEH
T ss_pred --ccccCcceEE-CCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEH
Confidence 0000001111 1110 135889999998 888888888776 6888764
No 296
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=61.55 E-value=1.9e+02 Score=31.65 Aligned_cols=91 Identities=9% Similarity=-0.070 Sum_probs=50.1
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecc
Q 001935 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRG 428 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG 428 (994)
+.|..+|+........+...-..-..|+|+|++..|.-+....+.|.++++. |. ..+.+ +..+
T Consensus 225 ~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d--------G~-------~~~~~--~~~~ 287 (386)
T 3v65_B 225 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--------GS-------HRKAV--ISQG 287 (386)
T ss_dssp CEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT--------SC-------SCEEE--ECSS
T ss_pred CEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC--------CC-------eeEEE--EECC
Confidence 4455555543322222222233457899999888888888877778888863 21 00112 2122
Q ss_pred cccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 001935 429 ITSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 429 ~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
......|++. ++..+.+-...+.|..++
T Consensus 288 --~~~P~giav~-~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 288 --LPHPFAITVF-EDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp --CSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred --CCCceEEEEE-CCEEEEeeCCCCeEEEEE
Confidence 1245778883 444444555566666655
No 297
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=59.80 E-value=18 Score=43.13 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=41.2
Q ss_pred eEEEEECCCCCEEEEEEcC----------CCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc
Q 001935 372 ISALCFDPSGTLLVTASVY----------GNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH 441 (994)
Q Consensus 372 IsaLaFSPdGtlLATAS~d----------Gt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSp 441 (994)
-..|+|+++|.|.+..+-. |. =.||.+.+. .| .++.|..+...+.++.++|||
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gn-n~v~~~dp~-----tG-----------el~~fl~~P~~aEpnGiafSP 540 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGN-NQMLCADPA-----TG-----------EIRRFMVGPIGCEVTGISFSP 540 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCS-CEEEEECTT-----TC-----------CEEEEEECCTTCEEEEEEECT
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCC-ceEEEEeCC-----CC-----------eEEEEEeCCCCccccCCEECC
Confidence 3569999999988844321 11 156666542 13 355555565557899999999
Q ss_pred CCCEEEEE
Q 001935 442 YSQWIAIV 449 (994)
Q Consensus 442 Dg~~LAsg 449 (994)
|++.|.++
T Consensus 541 D~ktLfV~ 548 (592)
T 4a9v_A 541 DQKTLFVG 548 (592)
T ss_dssp TSSEEEEE
T ss_pred CCCEEEEE
Confidence 99988776
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=59.34 E-value=62 Score=35.93 Aligned_cols=106 Identities=13% Similarity=0.078 Sum_probs=64.7
Q ss_pred CCCCeEEEEECCCCcEEEEeccC-----CC--CeEEEEE---CCCCCEEEEEEc------------CCCeEEEEeCCCCc
Q 001935 346 DNAGIVVVKDFVTRAIISQFKAH-----TS--PISALCF---DPSGTLLVTASV------------YGNNINIFRIMPSC 403 (994)
Q Consensus 346 s~dG~V~VwDl~s~~~i~~~~aH-----ts--pIsaLaF---SPdGtlLATAS~------------dGt~IrVwdi~p~~ 403 (994)
-..|.|..||...+........+ .. .++.|.| +|+|+||+.+.. ....+..||+.-
T Consensus 32 l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~-- 109 (334)
T 2p9w_A 32 LYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPL-- 109 (334)
T ss_dssp TTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSC--
T ss_pred ccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCc--
Confidence 36789999998766433322222 11 3578999 799999986542 135578888740
Q ss_pred ccCCCCCCccccCCcceEEEEEec---------ccccccEEEEEEccCCCEEEEEeCC-CeEEEEecCCCCC
Q 001935 404 MRSGSGNHKYDWNSSHVHLYKLHR---------GITSATIQDICFSHYSQWIAIVSSK-GTCHVFVLSPFGG 465 (994)
Q Consensus 404 ~~~~sG~~~~~~~~s~~~l~~L~R---------G~t~a~I~sIaFSpDg~~LAsgS~d-GTVhIw~I~~~gg 465 (994)
+.+|. ......|.. |......++|+..++|+--++++.- +. ||.+++.|.
T Consensus 110 --~~tg~--------~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~rV~pdG~ 169 (334)
T 2p9w_A 110 --SENSK--------PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IARVSADGK 169 (334)
T ss_dssp --CTTCC--------CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEEECTTSC
T ss_pred --CCCCC--------EEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEEEeCCCC
Confidence 00021 011222211 1111247999999999998888877 65 788888764
No 299
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=53.92 E-value=3.4e+02 Score=32.26 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=55.1
Q ss_pred CeEEEEECCCCcEEEEeccC-----CCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 001935 349 GIVVVKDFVTRAIISQFKAH-----TSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aH-----tspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~ 423 (994)
+-+.++|..+++........ ...|.+|+.+++|++.+.... +. +..|+... + .+.
T Consensus 469 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~-~G-l~~~~~~~-------~-----------~~~ 528 (781)
T 3v9f_A 469 AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG-GG-VGIYTPDM-------Q-----------LVR 528 (781)
T ss_dssp TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS-SC-EEEECTTC-------C-----------EEE
T ss_pred CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcC-CC-EEEEeCCC-------C-----------eEE
Confidence 44777888776543222222 467999999999998875442 33 66677532 1 222
Q ss_pred EE--ecccccccEEEEEEccCCCEEEEEeCCCeEEEEec
Q 001935 424 KL--HRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVL 460 (994)
Q Consensus 424 ~L--~RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I 460 (994)
.+ ..|.....|.+|...++|+..+ ++.+|-+..|+.
T Consensus 529 ~~~~~~~l~~~~i~~i~~d~~g~lWi-~T~~Glv~~~d~ 566 (781)
T 3v9f_A 529 KFNQYEGFCSNTINQIYRSSKGQMWL-ATGEGLVCFPSA 566 (781)
T ss_dssp EECTTTTCSCSCEEEEEECTTSCEEE-EETTEEEEESCT
T ss_pred EccCCCCCCCCeeEEEEECCCCCEEE-EECCCceEEECC
Confidence 23 2244445799999999987444 444665455553
No 300
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=52.47 E-value=69 Score=42.35 Aligned_cols=106 Identities=7% Similarity=0.174 Sum_probs=64.6
Q ss_pred CCeEEEEECCCCcEEEEeccCCCCeEEEEE-CCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 348 AGIVVVKDFVTRAIISQFKAHTSPISALCF-DPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~aHtspIsaLaF-SPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
..+++|+|+.++..+..+.-. .+|..=.| |++ .|+-.+ ++.|.-|++... ...++++..+
T Consensus 85 g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~--~l~lVT--~~aVyHW~~~~~--------------s~P~k~fdR~ 145 (1630)
T 1xi4_A 85 GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN--TVALVT--DNAVYHWSMEGE--------------SQPVKMFDRH 145 (1630)
T ss_pred CCeEEEeehHHhhhhcccccC-CCceEEEecCCC--eeEEEc--CCeEEEeccCCC--------------CccHHHHhcc
Confidence 457999999988765544433 45666566 444 343333 345899998421 0012333332
Q ss_pred cccccccEEEEEEccCCCEEEEEeC-------CCeEEEEecCCCCCCccccccc
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSS-------KGTCHVFVLSPFGGDSGFQTLS 473 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~-------dGTVhIw~I~~~gg~~~~~~H~ 473 (994)
.-..++.|..-.-++|.+|++..+- .|.+.+|.++.. -...+.+|.
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha 198 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 198 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhH
Confidence 2233567888888999999997654 378888888753 333455553
No 301
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=49.92 E-value=77 Score=36.08 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=36.7
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEeccc----ccccEEEEEEccC---CC
Q 001935 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGI----TSATIQDICFSHY---SQ 444 (994)
Q Consensus 372 IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~----t~a~I~sIaFSpD---g~ 444 (994)
-..|+|.|+|++|++-.. |..|++++... |. ...+..+.... ....+.+|+|+|| +.
T Consensus 29 P~~~a~~pdG~l~V~e~~-gg~I~~~~~~~-------g~--------~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g 92 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERA-TGKILRVNPES-------GS--------VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP 92 (454)
T ss_dssp EEEEEECTTSCEEEEETT-TCEEEEECTTT-------CC--------EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred ceEEEEcCCCcEEEEEcC-CCEEEEEECCC-------Cc--------EeEEecCCccccccCCCCceeEEEECCCcCcCC
Confidence 358999999998886543 54455555321 21 12223332211 1235779999997 66
Q ss_pred EEEEEe
Q 001935 445 WIAIVS 450 (994)
Q Consensus 445 ~LAsgS 450 (994)
+|.++.
T Consensus 93 ~lYv~~ 98 (454)
T 1cru_A 93 YIYISG 98 (454)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666554
No 302
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=48.08 E-value=4.1e+02 Score=31.44 Aligned_cols=173 Identities=11% Similarity=-0.020 Sum_probs=0.0
Q ss_pred CEEEEEECCCCeEEEEEeCCC--cEEEEEecC--CeEEEEe--CCeEEEEECCCCceeEEEeecCCccccCCCccccccC
Q 001935 173 TAVRFYSFQSHCYEHVLRFRS--SVCMVRCSP--RIVAVGL--ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVG 246 (994)
Q Consensus 173 ~tVrLWDlktge~V~tL~f~S--~V~sV~~S~--~iLAVgl--~~~I~IwDa~Tle~l~tL~t~p~p~~~~~g~~~vnv~ 246 (994)
..|+..|+.+......+.+.. .+.+|++++ +.|.++. .++|+.+++........+...-. .
T Consensus 15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~-------------~ 81 (628)
T 4a0p_A 15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLD-------------Y 81 (628)
T ss_dssp TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-------------C
T ss_pred CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC-------------C
Q ss_pred ccceEEcc--cEEEEccCCeeeccCCccCCCcCCCCCCCCCcCCCCCceEEEeehhhhhhhhcccceeeccccccccCCC
Q 001935 247 YGPMAVGP--RWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDG 324 (994)
Q Consensus 247 ~gplAlgp--RwLAyas~~~~iwd~G~~s~qsltp~~~S~stSp~~gsLVa~~A~dssk~la~Gi~ktlS~y~~~l~p~~ 324 (994)
..-+|+.. +.|-++.
T Consensus 82 P~GlAvD~~~~~LY~tD--------------------------------------------------------------- 98 (628)
T 4a0p_A 82 PEGMAVDWLGKNLYWAD--------------------------------------------------------------- 98 (628)
T ss_dssp CCEEEEETTTTEEEEEE---------------------------------------------------------------
T ss_pred cceEEEEeCCCEEEEEE---------------------------------------------------------------
Q ss_pred CCCCccCCCccccccccccccCCCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcc
Q 001935 325 SSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM 404 (994)
Q Consensus 325 s~s~~s~s~~~k~g~~~~as~s~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~ 404 (994)
...+.|.+.|+........+...-..-..|+++|...+|.-+.. |..-+|+.+...
T Consensus 99 ---------------------~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~-g~~~~I~r~~~d-- 154 (628)
T 4a0p_A 99 ---------------------TGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW-GGKPKIDRAAMD-- 154 (628)
T ss_dssp ---------------------TTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC-SSSCEEEEEETT--
T ss_pred ---------------------CCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC-CCCCEEEEEeCC--
Q ss_pred cCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE-eCCCeEEEEecC
Q 001935 405 RSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLS 461 (994)
Q Consensus 405 ~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsg-S~dGTVhIw~I~ 461 (994)
| .....+-.+.. ....|+++++++.|..+ +..+.|..++++
T Consensus 155 ----G----------~~~~~l~~~~~--~P~GlalD~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 155 ----G----------SERTTLVPNVG--RANGLTIDYAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp ----S----------CSCEEEECSCS--SEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ----C----------CceEEEECCCC--CcceEEEccccCEEEEEECCCCEEEEEcCC
No 303
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=47.38 E-value=3.2e+02 Score=30.03 Aligned_cols=51 Identities=10% Similarity=-0.045 Sum_probs=32.6
Q ss_pred eEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCC
Q 001935 350 IVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 350 ~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (994)
.|...++........+...-..-..|+|+|++..|.-+....+.|.++++.
T Consensus 226 ~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 226 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp CEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 444445443322222222223457899999999898888877788888874
No 304
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=47.37 E-value=3e+02 Score=29.61 Aligned_cols=30 Identities=13% Similarity=0.001 Sum_probs=24.3
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEeCC
Q 001935 371 PISALCFDPSGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (994)
.-..|+|+|++..|.-+....+.|..+++.
T Consensus 204 ~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 204 WPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 457899999888888888877778888863
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=44.98 E-value=54 Score=36.44 Aligned_cols=63 Identities=8% Similarity=0.191 Sum_probs=40.6
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEcc-CCCEEEEE
Q 001935 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSH-YSQWIAIV 449 (994)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSp-Dg~~LAsg 449 (994)
--+-|+|||||+.|..+....+.|.+|++... |. .....++.+ ......+++.+ ||++.+++
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~------g~------l~~~~~~~~-----~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKHAN------WT------LTPLRVLSF-----DTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTT------SC------EEEEEEEEC-----SSEEEEEEECTTTCCEEEEE
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEECCC------Cc------EecCEEEeC-----CCCCceEEEeCCCCcEEEEe
Confidence 34789999999988888876778999998642 21 001122222 23467788888 47755544
Q ss_pred e
Q 001935 450 S 450 (994)
Q Consensus 450 S 450 (994)
.
T Consensus 285 ~ 285 (355)
T 3sre_A 285 H 285 (355)
T ss_dssp E
T ss_pred c
Confidence 3
No 306
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=43.92 E-value=89 Score=34.09 Aligned_cols=92 Identities=16% Similarity=0.152 Sum_probs=46.3
Q ss_pred CCCeEEEEECCCCc-EEEEec---cCCCCeEEEEECCC----CCEEEEEEc---CC---CeEEEEeCCCCcccCCCCCCc
Q 001935 347 NAGIVVVKDFVTRA-IISQFK---AHTSPISALCFDPS----GTLLVTASV---YG---NNINIFRIMPSCMRSGSGNHK 412 (994)
Q Consensus 347 ~dG~V~VwDl~s~~-~i~~~~---aHtspIsaLaFSPd----GtlLATAS~---dG---t~IrVwdi~p~~~~~~sG~~~ 412 (994)
..|.|.++|. +++ .+..+. ........|+|+|+ |.+.++-+. ++ +.|..|+.... .+.
T Consensus 47 ~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~-----~~~-- 118 (354)
T 3a9g_A 47 RPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGS-----TFK-- 118 (354)
T ss_dssp TTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSS-----SCC--
T ss_pred CCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCC-----CcC--
Confidence 4488888873 343 333332 12345788999997 666665442 11 33445554310 000
Q ss_pred cccCCcceEEEE-Eecc-cccccEEEEEEccCCCEEEEEeC
Q 001935 413 YDWNSSHVHLYK-LHRG-ITSATIQDICFSHYSQWIAIVSS 451 (994)
Q Consensus 413 ~~~~~s~~~l~~-L~RG-~t~a~I~sIaFSpDg~~LAsgS~ 451 (994)
+. ..+.++. +-.+ .| ....|+|.|||...++.++
T Consensus 119 --~~-~~~~l~~~~~~~~~h--~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 119 --LK-EVKTLIDGIPGAYIH--NGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp --EE-EEEEEEEEEECCSSC--CCCCEEECTTSCEEEECCC
T ss_pred --cC-ccEEEEEcCCCCCCc--CCceEEECCCCcEEEEECC
Confidence 00 1122222 2211 12 2367999999986666444
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=43.79 E-value=83 Score=34.14 Aligned_cols=89 Identities=10% Similarity=0.078 Sum_probs=45.4
Q ss_pred CCCeEEEEECCCCc--EEEEec---cCCCCeEEEEECCC----CCEEEEEEcCC----CeEEEEeCCCCcccCCCCCCcc
Q 001935 347 NAGIVVVKDFVTRA--IISQFK---AHTSPISALCFDPS----GTLLVTASVYG----NNINIFRIMPSCMRSGSGNHKY 413 (994)
Q Consensus 347 ~dG~V~VwDl~s~~--~i~~~~---aHtspIsaLaFSPd----GtlLATAS~dG----t~IrVwdi~p~~~~~~sG~~~~ 413 (994)
..|.|.+++ +++ .+..+. .-......|+|+|+ |.+.++-+..+ +.|..|+... +.
T Consensus 49 ~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~-------~~--- 116 (352)
T 2ism_A 49 RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLG-------ER--- 116 (352)
T ss_dssp TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECS-------SC---
T ss_pred CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCC-------CC---
Confidence 348888888 333 233332 12345788999998 55555544321 3455566531 10
Q ss_pred ccCCcceEEEE-Ee--cc-cccccEEEEEEccCCCEEEEEeC
Q 001935 414 DWNSSHVHLYK-LH--RG-ITSATIQDICFSHYSQWIAIVSS 451 (994)
Q Consensus 414 ~~~~s~~~l~~-L~--RG-~t~a~I~sIaFSpDg~~LAsgS~ 451 (994)
+. ..+.+.. +. .+ .| ....|+|.|||...++.++
T Consensus 117 -~~-~~~~l~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~~G~ 154 (352)
T 2ism_A 117 -GV-LDRVVLDGIPARPHGLH--SGGRIAFGPDGMLYVTTGE 154 (352)
T ss_dssp -EE-EEEEEEEEECCCTTCCC--CCCCEEECTTSCEEEECCC
T ss_pred -cC-ceEEEEEeCCCCCCCCc--CCceEEECCCCCEEEEECC
Confidence 00 1122222 32 11 12 2358999999965555443
No 308
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=42.31 E-value=2.2e+02 Score=30.27 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=45.7
Q ss_pred cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEE
Q 001935 367 AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWI 446 (994)
Q Consensus 367 aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~L 446 (994)
.+...+.+++|+|+|++++.+.. |...+-.|-. |. .| ..+ ..+ ....+.+++++++++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S~d~g--------G~---tW----~~~---~~~-~~~~~~~~~~~~~g~~~ 219 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSR-GSFYSTWEPG--------QT---AW----EPH---NRT-TSRRLHNMGFTPDGRLW 219 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETT-SSEEEEECTT--------CS---SC----EEE---ECC-SSSCEEEEEECTTSCEE
T ss_pred CCCcceEEEEEcCCCcEEEEECC-CcEEEEeCCC--------CC---ce----eEC---CCC-CCCccceeEECCCCCEE
Confidence 45567899999999999886654 7755544420 11 11 222 223 23468899999999866
Q ss_pred EEEeCCCeEEEEe
Q 001935 447 AIVSSKGTCHVFV 459 (994)
Q Consensus 447 AsgS~dGTVhIw~ 459 (994)
+ ++.+|.+.+..
T Consensus 220 ~-~~~~G~~~~s~ 231 (327)
T 2xbg_A 220 M-IVNGGKIAFSD 231 (327)
T ss_dssp E-EETTTEEEEEE
T ss_pred E-EeCCceEEEec
Confidence 4 45678876653
No 309
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=41.00 E-value=5.8e+02 Score=31.20 Aligned_cols=52 Identities=10% Similarity=-0.041 Sum_probs=34.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCC
Q 001935 349 GIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIM 400 (994)
Q Consensus 349 G~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~ 400 (994)
+.|.+.++........+...-..-..|++++.+..|.-+..+...|.++++.
T Consensus 537 ~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 537 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp CEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 3455555554333333333334568899999888888888877778888873
No 310
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=40.53 E-value=1.1e+02 Score=33.05 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=40.4
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---cccccccEEEEEEccC---CCE
Q 001935 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGITSATIQDICFSHY---SQW 445 (994)
Q Consensus 372 IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~---RG~t~a~I~sIaFSpD---g~~ 445 (994)
-..|+|+|||+++++- ..|+ |++++ . |. ...+..+. .| ......|+|+|| +.+
T Consensus 33 P~~ia~~pdG~l~V~e-~~g~-I~~i~--~-------g~--------~~~~~~~~v~~~g--~~~p~gia~~pdf~~~g~ 91 (352)
T 2ism_A 33 PWALAFLPDGGMLIAE-RPGR-IRLFR--E-------GR--------LSTYAELSVYHRG--ESGLLGLALHPRFPQEPY 91 (352)
T ss_dssp EEEEEECTTSCEEEEE-TTTE-EEEEE--T-------TE--------EEEEEECCCCCST--TCSEEEEEECTTTTTSCE
T ss_pred ceEEEEcCCCeEEEEe-CCCe-EEEEE--C-------CC--------ccEeecceEeecC--CCCceeEEECCCCCCCCE
Confidence 3589999999977764 4354 77776 2 21 01222221 11 234789999999 666
Q ss_pred EEEEeCC------CeEEEEecC
Q 001935 446 IAIVSSK------GTCHVFVLS 461 (994)
Q Consensus 446 LAsgS~d------GTVhIw~I~ 461 (994)
|.++... +.|..|++.
T Consensus 92 lYv~~~~~~~~~~~~v~r~~~~ 113 (352)
T 2ism_A 92 VYAYRTVAEGGLRNQVVRLRHL 113 (352)
T ss_dssp EEEEEEECTTSSEEEEEEEEEC
T ss_pred EEEEEecCCCCCccEEEEEEeC
Confidence 6555432 455555554
No 311
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=40.41 E-value=1.1e+02 Score=35.44 Aligned_cols=77 Identities=25% Similarity=0.410 Sum_probs=50.3
Q ss_pred CCCCeEEEEECCCCC---EEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-----ccc--cccEEEE
Q 001935 368 HTSPISALCFDPSGT---LLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-----GIT--SATIQDI 437 (994)
Q Consensus 368 HtspIsaLaFSPdGt---lLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R-----G~t--~a~I~sI 437 (994)
...+|..+-|+|-|. .|++=-.++. ||+||+..... ... .|.+ |.. ...|.++
T Consensus 123 ~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~---------------~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 123 PKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQE---------------KPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTS---------------CCE-EESCCCSEEESCSSCCCEEEE
T ss_pred CCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCC---------------CCc-chhccccccCCCcccceEEEE
Confidence 357899999998764 6777777555 99999964211 011 2211 211 1368999
Q ss_pred EEccCCCEEEEEe--CCCeEEEEecCCC
Q 001935 438 CFSHYSQWIAIVS--SKGTCHVFVLSPF 463 (994)
Q Consensus 438 aFSpDg~~LAsgS--~dGTVhIw~I~~~ 463 (994)
+|+.++-.|-+.+ ..| .||++-|+
T Consensus 186 ~Fg~~~lTLYvl~~t~~G--DIYAlcP~ 211 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGG--DIFAFYPF 211 (452)
T ss_dssp EECTTSSCEEEEECTTSC--EEEEESSC
T ss_pred EEcCCCcEEEEEecCCCC--CEEEECCC
Confidence 9999988777755 445 47777775
No 312
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=39.78 E-value=34 Score=41.27 Aligned_cols=95 Identities=19% Similarity=0.129 Sum_probs=53.3
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCC-CeEEEEeCCCCcccCCCCCCccccCCcceEEEEE
Q 001935 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYG-NNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKL 425 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dG-t~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L 425 (994)
..+.|.++|+........+.........|+++|++.+|.-+.... ..|.++++. |. ....+
T Consensus 473 ~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d--------G~----------~~~~l 534 (699)
T 1n7d_A 473 VLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------GV----------DIYSL 534 (699)
T ss_dssp TTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS--------SC----------CCCEE
T ss_pred cCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC--------CC----------CeeEE
Confidence 457789999886654444443333457899999765555444321 335555542 21 11111
Q ss_pred e-cccccccEEEEEEccCCCEEEEE-eCCCeEEEEecC
Q 001935 426 H-RGITSATIQDICFSHYSQWIAIV-SSKGTCHVFVLS 461 (994)
Q Consensus 426 ~-RG~t~a~I~sIaFSpDg~~LAsg-S~dGTVhIw~I~ 461 (994)
. .+. .....|+|+|++++|..+ +..++|.++++.
T Consensus 535 ~~~~l--~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 535 VTENI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp SCSSC--SSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred EeCCC--CCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 1 111 234679999987665544 455677777764
No 313
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=39.18 E-value=3.8e+02 Score=28.51 Aligned_cols=70 Identities=13% Similarity=-0.071 Sum_probs=42.0
Q ss_pred eEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeC
Q 001935 372 ISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSS 451 (994)
Q Consensus 372 IsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~ 451 (994)
-+.|+|+|++..|.-++.....|..+++. |. . +. .+..+. ......|++..+ ..+.+-..
T Consensus 168 Pnglavd~~~~~lY~aD~~~~~I~~~d~d--------G~-------~-~~--~~~~~~-~~~P~glav~~~-~lywtd~~ 227 (318)
T 3sov_A 168 PNGLTLDYEEQKLYWADAKLNFIHKSNLD--------GT-------N-RQ--AVVKGS-LPHPFALTLFED-ILYWTDWS 227 (318)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT--------SC-------S-CE--EEECSC-CSCEEEEEEETT-EEEEEETT
T ss_pred ccEEEEeccCCEEEEEECCCCEEEEEcCC--------CC-------c-eE--EEecCC-CCCceEEEEeCC-EEEEEecC
Confidence 47899999888888888877778888873 21 0 11 121221 124567887533 34444445
Q ss_pred CCeEEEEecC
Q 001935 452 KGTCHVFVLS 461 (994)
Q Consensus 452 dGTVhIw~I~ 461 (994)
.+.|..++..
T Consensus 228 ~~~V~~~~~~ 237 (318)
T 3sov_A 228 THSILACNKY 237 (318)
T ss_dssp TTEEEEEETT
T ss_pred CCeEEEEECC
Confidence 5666666643
No 314
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=37.57 E-value=95 Score=34.91 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=42.1
Q ss_pred EEEEECC-CCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcc-eEEEEEecccccccEEEEEEccCCCEEEEE-
Q 001935 373 SALCFDP-SGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSH-VHLYKLHRGITSATIQDICFSHYSQWIAIV- 449 (994)
Q Consensus 373 saLaFSP-dGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~-~~l~~L~RG~t~a~I~sIaFSpDg~~LAsg- 449 (994)
..++++| +|.+.++ +.....|++|+... |. . ..+. .-+.. ..-..|+|+||+++|.++
T Consensus 231 ~giavd~~~G~lyv~-d~~~~~V~~~d~~~-------g~--------~~~~~~--~~~~~-~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 231 KTCAVHPQNGKIYYT-RYHHAMISSYDPAT-------GT--------LTEEEV--MMDTK-GSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp CCCEECTTTCCEEEC-BTTCSEEEEECTTT-------CC--------EEEEEE--ECSCC-SSCEEEEECTTSSEEEEEE
T ss_pred CEEEEeCCCCeEEEE-ECCCCEEEEEECCC-------Ce--------EEEEEe--ccCCC-CCcccEEEeCCCCEEEEEe
Confidence 5689999 7776654 44345577777531 21 1 1122 22221 223469999999965554
Q ss_pred eCCCeEEEEecCCC
Q 001935 450 SSKGTCHVFVLSPF 463 (994)
Q Consensus 450 S~dGTVhIw~I~~~ 463 (994)
...+.|+.++++..
T Consensus 292 ~~~~~I~~~~~d~~ 305 (433)
T 4hw6_A 292 NGKHCIYRVDYNRE 305 (433)
T ss_dssp TTTTEEEEEEBCTT
T ss_pred CCCCEEEEEeCCCC
Confidence 45678888777643
No 315
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=37.05 E-value=3.9e+02 Score=28.04 Aligned_cols=73 Identities=7% Similarity=-0.120 Sum_probs=43.8
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 001935 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (994)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsg 449 (994)
..-..|+|+|++..|.-+....+.|.++++. |. ..+.+... +..-.....|++. .+..+.+-
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--------g~-------~~~~~~~~--~~~~~~P~giav~-~~~ly~~d 225 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVN--------GG-------NRKTILED--EKRLAHPFSLAVF-EDKVFWTD 225 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT--------SC-------SCEEEEEC--TTTTSSEEEEEEE-TTEEEEEE
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecC--------CC-------ceEEEeec--CCccCCcEEEEEE-CCEEEEEE
Confidence 3457899999988888888767779999874 21 01222221 1111235678885 34444455
Q ss_pred eCCCeEEEEec
Q 001935 450 SSKGTCHVFVL 460 (994)
Q Consensus 450 S~dGTVhIw~I 460 (994)
...+.|..++.
T Consensus 226 ~~~~~V~~~~~ 236 (316)
T 1ijq_A 226 IINEAIFSANR 236 (316)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEEeC
Confidence 55667776664
No 316
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=36.37 E-value=1.1e+02 Score=33.24 Aligned_cols=109 Identities=11% Similarity=0.063 Sum_probs=0.0
Q ss_pred cCCCCeEEEEECCCC--cEEEEec----cCCCCeEEEEECCC---CCEEEEEEcC-------CCeEEEEeCCCCcccCCC
Q 001935 345 MDNAGIVVVKDFVTR--AIISQFK----AHTSPISALCFDPS---GTLLVTASVY-------GNNINIFRIMPSCMRSGS 408 (994)
Q Consensus 345 ~s~dG~V~VwDl~s~--~~i~~~~----aHtspIsaLaFSPd---GtlLATAS~d-------Gt~IrVwdi~p~~~~~~s 408 (994)
+...|.|.++|.... +.+..+. ........|+|+|+ +..|..+... .+.|..|++...
T Consensus 35 ~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~------ 108 (353)
T 2g8s_A 35 TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDD------ 108 (353)
T ss_dssp EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTT------
T ss_pred EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCC------
Q ss_pred CCCccccCCcceEEEEEeccccc-----ccEEEEEEccCCCEEEEEeCCCeE------------EEEecCCCCCCc
Q 001935 409 GNHKYDWNSSHVHLYKLHRGITS-----ATIQDICFSHYSQWIAIVSSKGTC------------HVFVLSPFGGDS 467 (994)
Q Consensus 409 G~~~~~~~~s~~~l~~L~RG~t~-----a~I~sIaFSpDg~~LAsgS~dGTV------------hIw~I~~~gg~~ 467 (994)
.........+..+... ..-..|+|.||| +|.++..+++- +|+.+++.+..+
T Consensus 109 -------~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 109 -------LSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp -------SSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred -------CCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
No 317
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=35.90 E-value=1.8e+02 Score=32.11 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=20.9
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEeC
Q 001935 370 SPISALCFDPSGTLLVTASVYGNNINIFRI 399 (994)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt~IrVwdi 399 (994)
..-..|+|.|||++|+|--..|+ |++++.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~-I~~v~~ 60 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEAT-ITRVDA 60 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCE-EEEECT
T ss_pred CCceEEEEcCCCcEEEEEecCCE-EEEEEC
Confidence 34578999999999887653465 666653
No 318
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=35.49 E-value=79 Score=33.71 Aligned_cols=92 Identities=15% Similarity=0.206 Sum_probs=49.8
Q ss_pred CCCeEEEEECCCCcEEEEec----cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEE
Q 001935 347 NAGIVVVKDFVTRAIISQFK----AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHL 422 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~----aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l 422 (994)
.+|.+.+.+...++.-..+. .+...+.+|+|.++++++|.+.. |. | |..... |. .|
T Consensus 223 ~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~-g~-i--~~S~Dg------G~---tW------- 282 (327)
T 2xbg_A 223 NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA-GA-L--LCSQDG------GQ---TW------- 282 (327)
T ss_dssp TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEEST-TC-E--EEESST------TS---SC-------
T ss_pred CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCC-Ce-E--EEeCCC------Cc---cc-------
Confidence 35666665433233222222 12345899999999998887664 65 3 332221 21 11
Q ss_pred EEEeccc-ccccEEEEEEccCCCEEEEEeCCCeEEEEe
Q 001935 423 YKLHRGI-TSATIQDICFSHYSQWIAIVSSKGTCHVFV 459 (994)
Q Consensus 423 ~~L~RG~-t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~ 459 (994)
..+..+. ....+++|+|.++++ +++++.+|+|.-++
T Consensus 283 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 283 QQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp EECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred EEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 1122221 124578899986665 55666789765543
No 319
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=32.58 E-value=1.2e+02 Score=35.29 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=41.3
Q ss_pred CeEEEEECCC-CCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEec-cccc-ccEEEEEE-------c
Q 001935 371 PISALCFDPS-GTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHR-GITS-ATIQDICF-------S 440 (994)
Q Consensus 371 pIsaLaFSPd-GtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~R-G~t~-a~I~sIaF-------S 440 (994)
.-..|+|+|. +..|..+...++.|+++|+.. ..+..|.. |... .....|+| +
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~------------------~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d 201 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN------------------RMLSSPLNINTIPTNRIRSIAFNKKIEGYA 201 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTT------------------TEEEEEECCTTSSCSBEEEEEECCCBTTTB
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCC------------------CEEEEEEccCccccCCCcEEEEeecccccC
Confidence 3568999993 444444544456688888753 24444432 2211 24899999 9
Q ss_pred cCCCEEEEEeCCC
Q 001935 441 HYSQWIAIVSSKG 453 (994)
Q Consensus 441 pDg~~LAsgS~dG 453 (994)
+|+++|.++...+
T Consensus 202 ~~G~~lyvad~~~ 214 (496)
T 3kya_A 202 DEAEYMIVAIDYD 214 (496)
T ss_dssp CTTCEEEEEECCC
T ss_pred CCCCEEEEEeCCC
Confidence 9999877776665
No 320
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=31.50 E-value=1.5e+02 Score=32.16 Aligned_cols=59 Identities=19% Similarity=0.295 Sum_probs=35.0
Q ss_pred CeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe---cccccccEEEEEEccC---CC
Q 001935 371 PISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH---RGITSATIQDICFSHY---SQ 444 (994)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~---RG~t~a~I~sIaFSpD---g~ 444 (994)
.-..|+|+|||+++++- ..|+ |++++ +. | . ..+..+. .| ......|+|+|| +.
T Consensus 30 ~P~~ia~~pdG~l~V~e-~~g~-I~~~d--~~------G--------~-~~~~~~~v~~~g--~~g~~gia~~pdf~~~g 88 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTE-RPGR-LVLIS--PS------G--------K-KLVASFDVANVG--EAGLLGLALHPEFPKKS 88 (354)
T ss_dssp CEEEEEEEETTEEEEEE-TTTE-EEEEC--SS------C--------E-EEEEECCCCCST--TCSEEEEEECTTTTTSC
T ss_pred CCeEEEEcCCCeEEEEe-CCCE-EEEEe--CC------C--------c-eEeeccceeecC--CCceeeEEeCCCCCcCC
Confidence 34689999999977764 4354 66665 21 3 0 1222221 11 134789999998 66
Q ss_pred EEEEEe
Q 001935 445 WIAIVS 450 (994)
Q Consensus 445 ~LAsgS 450 (994)
+|.++.
T Consensus 89 ~lyv~~ 94 (354)
T 3a9g_A 89 WVYLYA 94 (354)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 665544
No 321
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=31.43 E-value=7.2e+02 Score=29.43 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=54.0
Q ss_pred CCeEEEEECCCCcEEEEec----cCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEE
Q 001935 348 AGIVVVKDFVTRAIISQFK----AHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLY 423 (994)
Q Consensus 348 dG~V~VwDl~s~~~i~~~~----aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~ 423 (994)
++-+.+||..++.. ..+. .....|.+|+.+++|++.+ ++..+ -+.+|+... + ...
T Consensus 382 ~~Gl~~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~-Gl~~~~~~~-------~-----------~~~ 440 (781)
T 3v9f_A 382 GGGINVFENGKRVA-IYNKENRELLSNSVLCSLKDSEGNLWF-GTYLG-NISYYNTRL-------K-----------KFQ 440 (781)
T ss_dssp SSCEEEEETTEEEE-ECC-----CCCSBEEEEEECTTSCEEE-EETTE-EEEEECSSS-------C-----------EEE
T ss_pred CCcEEEEECCCCeE-EEccCCCCCCCcceEEEEECCCCCEEE-EeccC-CEEEEcCCC-------C-----------cEE
Confidence 44577788765432 2221 2346799999999999887 44423 377777532 1 222
Q ss_pred EEec-ccccccEEEEEEccCCCEEEEEeCCCeEEEEecC
Q 001935 424 KLHR-GITSATIQDICFSHYSQWIAIVSSKGTCHVFVLS 461 (994)
Q Consensus 424 ~L~R-G~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~ 461 (994)
.+.. +.....|.+|...++++ |.+++. +-+.+|+..
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~ 477 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLA 477 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESS
T ss_pred EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCC
Confidence 2221 23345799999998876 444555 456677644
No 322
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=31.31 E-value=1.4e+02 Score=34.00 Aligned_cols=84 Identities=14% Similarity=0.132 Sum_probs=46.7
Q ss_pred CeEEEEECCCCCEEEEEEcCCC-----------------------------eEEEEeCCCCcccCCCCCCccccCC-cce
Q 001935 371 PISALCFDPSGTLLVTASVYGN-----------------------------NINIFRIMPSCMRSGSGNHKYDWNS-SHV 420 (994)
Q Consensus 371 pIsaLaFSPdGtlLATAS~dGt-----------------------------~IrVwdi~p~~~~~~sG~~~~~~~~-s~~ 420 (994)
....|+|+|||+|.++.+..+. .=+|+++.+. |..-.+..- ...
T Consensus 145 ~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~d------G~ip~~Npf~~~~ 218 (454)
T 1cru_A 145 QSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLD------GSIPKDNPSFNGV 218 (454)
T ss_dssp CEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTT------SCCCTTCCEETTE
T ss_pred CCCeEeECCCCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCC------CCCCCCCCCCCCC
Confidence 5689999999999888664221 1246666553 210000000 000
Q ss_pred EEEEEecccccccEEEEEEccCCCEEEE-EeCCCeEEEEecCC
Q 001935 421 HLYKLHRGITSATIQDICFSHYSQWIAI-VSSKGTCHVFVLSP 462 (994)
Q Consensus 421 ~l~~L~RG~t~a~I~sIaFSpDg~~LAs-gS~dGTVhIw~I~~ 462 (994)
....+..|+. ..+.|+|.|+|+..++ -+.++--.|..|.+
T Consensus 219 ~~ei~a~G~R--Np~gla~dp~G~L~~~d~g~~~~dein~i~~ 259 (454)
T 1cru_A 219 VSHIYTLGHR--NPQGLAFTPNGKLLQSEQGPNSDDEINLIVK 259 (454)
T ss_dssp ECSEEEBCCS--EEEEEEECTTSCEEEEEECSSSCEEEEECCT
T ss_pred cceEEEECCC--CcceEEECCCCCEEEEecCCCCCeEEEEecC
Confidence 1112334653 4799999998875544 44556666766654
No 323
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=28.53 E-value=4.7e+02 Score=29.83 Aligned_cols=101 Identities=11% Similarity=0.136 Sum_probs=52.0
Q ss_pred CCCCeEEEEECCCC---cEEEEec---c------CCCCeEEEEECCC----CCEEEEEEcCC---------CeEEE--Ee
Q 001935 346 DNAGIVVVKDFVTR---AIISQFK---A------HTSPISALCFDPS----GTLLVTASVYG---------NNINI--FR 398 (994)
Q Consensus 346 s~dG~V~VwDl~s~---~~i~~~~---a------HtspIsaLaFSPd----GtlLATAS~dG---------t~IrV--wd 398 (994)
...|.|++++.... ..+..+. + ...-+..|+|+|+ |.+.++-+..+ ...+| |.
T Consensus 33 er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~ 112 (463)
T 2wg3_C 33 EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYT 112 (463)
T ss_dssp ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEE
T ss_pred eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEE
Confidence 45688888875432 1223332 1 1346788999997 77766654321 12344 44
Q ss_pred CCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCC
Q 001935 399 IMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKG 453 (994)
Q Consensus 399 i~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dG 453 (994)
+... . .. ..++ .+.+.|.++........-..|+|.|||...++.++.+
T Consensus 113 ~~~~---~-~~--~~d~-~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 113 VSRK---N-PH--QVDL-RTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp BCTT---C-TT--SBCG-GGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred EcCC---C-CC--ccCC-CCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 4320 0 00 0011 1223455543211122358899999998776666654
No 324
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=25.26 E-value=6.3e+02 Score=26.77 Aligned_cols=69 Identities=14% Similarity=0.042 Sum_probs=42.9
Q ss_pred EEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCe
Q 001935 375 LCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGT 454 (994)
Q Consensus 375 LaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~dGT 454 (994)
..++|+|.+|+-.+..+. .+|+.+... |. ....|. ...+ ..|+|++++|.-++..+.
T Consensus 189 ~~~~P~g~~iy~t~~~~~-~~I~~~~ld------G~----------~~~~Lt----~~~~--~~~~~~g~~Iy~~~~~~~ 245 (302)
T 3s25_A 189 KPVVLDDTNVYYMDVNRD-NAIVHVNIN------NP----------NPVVLT----EANI--EHYNVYGSLIFYQRGGDN 245 (302)
T ss_dssp EEEEEETTEEEEEEGGGT-TEEEEECSS------SC----------CCEECS----CSCE--EEEEEETTEEEEEECSSS
T ss_pred ceeeecCCEEEEEEcCCC-cEEEEEECC------CC----------CeEEEe----CCCc--ceEEECCCEEEEEECCCC
Confidence 346799999988776443 466665432 21 122232 2223 348999999987766555
Q ss_pred EEEEecCCCCCC
Q 001935 455 CHVFVLSPFGGD 466 (994)
Q Consensus 455 VhIw~I~~~gg~ 466 (994)
-+|+.+...|..
T Consensus 246 ~~i~~~~~DG~~ 257 (302)
T 3s25_A 246 PALCVVKNDGTG 257 (302)
T ss_dssp CEEEEEETTSCC
T ss_pred cEEEEEECCCCc
Confidence 788888876653
No 325
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=24.05 E-value=1.8e+02 Score=31.19 Aligned_cols=94 Identities=4% Similarity=-0.103 Sum_probs=56.5
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEe
Q 001935 347 NAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLH 426 (994)
Q Consensus 347 ~dG~V~VwDl~s~~~i~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~ 426 (994)
....|..-++.... ...|..|.. ++|+|+|+.|.-.+.....|.+.++. |. ....+.
T Consensus 127 ~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~--------g~----------~~~~l~ 183 (302)
T 3s25_A 127 TATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTA--------SQ----------SEALFY 183 (302)
T ss_dssp SCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETT--------TT----------EEEEEE
T ss_pred CCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECC--------CC----------CEEEEe
Confidence 34556666766433 334444432 56899999999777633446666653 21 112232
Q ss_pred cccccccEEEEEEccCCCEEEEEeCCCeEEEEecCCCCCCcc
Q 001935 427 RGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG 468 (994)
Q Consensus 427 RG~t~a~I~sIaFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~ 468 (994)
.|.. .+.++|++++|+-....+.-+|+.+...|+...
T Consensus 184 ~~~~-----~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~ 220 (302)
T 3s25_A 184 DCNC-----YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV 220 (302)
T ss_dssp CSCE-----EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCE
T ss_pred CCCc-----cceeeecCCEEEEEEcCCCcEEEEEECCCCCeE
Confidence 3321 235679999999877655478998888776543
No 326
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=23.43 E-value=1.9e+02 Score=30.62 Aligned_cols=65 Identities=20% Similarity=0.329 Sum_probs=39.2
Q ss_pred EEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCC
Q 001935 373 SALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSK 452 (994)
Q Consensus 373 saLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsgS~d 452 (994)
.++.|+|+|.|.|+ +. |+ ||++.+.. + + ...|.....++-. +|- ..+..|.|.|||..-|+. |
T Consensus 91 ~a~~fD~~G~LYav-~d-G~---iyr~~pP~--~--~--~~~Wl~~a~~vg~--~gw--~~~~~lff~p~G~Lyav~--d 153 (236)
T 1tl2_A 91 QFLFFDPNGYLYAV-SK-DK---LYKASPPQ--S--D--TDNWIARATEVGS--GGW--SGFKFLFFHPNGYLYAVH--G 153 (236)
T ss_dssp SEEEECTTSCEEEE-ET-TE---EEEESCCC--S--T--TCCHHHHSEEEEC--SSG--GGEEEEEECTTSCEEEEE--T
T ss_pred eEEEECCCCCEEEe-CC-CE---EEEeCCCc--C--C--CCceeccccEecc--CCC--CceEEEEECCCceEEEEe--C
Confidence 57899999999988 43 75 44443321 1 1 1133322222211 121 257999999999988887 7
Q ss_pred Ce
Q 001935 453 GT 454 (994)
Q Consensus 453 GT 454 (994)
|.
T Consensus 154 g~ 155 (236)
T 1tl2_A 154 QQ 155 (236)
T ss_dssp TE
T ss_pred Cc
Confidence 76
No 327
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=20.12 E-value=2.9e+02 Score=29.28 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=43.7
Q ss_pred CCeEEEEECCCCCEEEEEEcCCCeEEEEeCCCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEE
Q 001935 370 SPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIV 449 (994)
Q Consensus 370 spIsaLaFSPdGtlLATAS~dGt~IrVwdi~p~~~~~~sG~~~~~~~~s~~~l~~L~RG~t~a~I~sIaFSpDg~~LAsg 449 (994)
..+.+|.|+|+|.+-|.. +|. +. ....|. + ...+|......+ -++|-+ .-.-+.|++++...++.
T Consensus 135 ~~~~~lff~p~G~Lyav~--dg~-ly-r~~~P~------~-~~~~wl~~~~~~--g~~g~~--~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 135 SGFKFLFFHPNGYLYAVH--GQQ-FY-KALPPV------S-NQDNWLARATKI--GQGGWD--TFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp GGEEEEEECTTSCEEEEE--TTE-EE-EECCCS------S-TTCCHHHHCEEE--ESSSGG--GEEEEEECTTSCEEEEE
T ss_pred CceEEEEECCCceEEEEe--CCc-EE-ecCCCC------C-CCccccccccee--ccCCcc--eEEEEEECCCCcEEEEe
Confidence 357899999999998877 465 21 233331 1 112232211111 113322 23447799999988888
Q ss_pred eCCCeEEEEecCCC
Q 001935 450 SSKGTCHVFVLSPF 463 (994)
Q Consensus 450 S~dGTVhIw~I~~~ 463 (994)
+| +||...+.
T Consensus 200 --~g--~~Y~~~~p 209 (236)
T 1tl2_A 200 --GG--KFYEDYPP 209 (236)
T ss_dssp --TT--EEEEESCC
T ss_pred --CC--eEEecCCc
Confidence 66 78887654
Done!