BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001938
         (993 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4P0P3|MED14_USTMA Mediator of RNA polymerase II transcription subunit 14 OS=Ustilago
           maydis (strain 521 / FGSC 9021) GN=RGR1 PE=3 SV=1
          Length = 1439

 Score = 35.8 bits (81), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 4/98 (4%)

Query: 351 VQRKLPTGKPAISVNAEQNCEEVASNNFSAKLASLNE---KHPLIQEIGSSNSSDSQVNG 407
           VQ   PTG PA+SV + +  +       ++K+ S  E   +  +  E G+   +   V G
Sbjct: 807 VQVMDPTGTPALSVQSIEWLDRAKIAAAASKVGSSGEDVGQEFVATEAGTKRKAPPGVQG 866

Query: 408 ENDANGKTWRMGKVSMEEGAYLDDYCNDFVKY-RMEQE 444
           E +     +   ++++EE A +  YC   V Y R+EQ+
Sbjct: 867 ETNDVDANFGSSELTIEELADVHSYCIALVSYFRVEQQ 904


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.128    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 354,596,772
Number of Sequences: 539616
Number of extensions: 14831632
Number of successful extensions: 37841
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 180
Number of HSP's that attempted gapping in prelim test: 37270
Number of HSP's gapped (non-prelim): 623
length of query: 993
length of database: 191,569,459
effective HSP length: 127
effective length of query: 866
effective length of database: 123,038,227
effective search space: 106551104582
effective search space used: 106551104582
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)