Query 001938
Match_columns 993
No_of_seqs 45 out of 47
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 05:27:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f6h_X Myosin-2, type V myosin 97.2 0.00026 8.8E-09 76.9 5.1 270 603-965 44-325 (419)
2 3mmi_A Myosin-4; globular tail 96.0 0.028 9.6E-07 61.5 11.0 282 569-965 17-308 (386)
3 1ugk_A Synaptotagmin IV, KIAA1 90.5 1.9 6.6E-05 38.2 10.2 104 20-141 25-132 (138)
4 3f04_A Synaptotagmin-1; C2A, c 86.6 2.3 7.9E-05 37.8 8.0 91 20-128 37-129 (143)
5 2enp_A B/K protein; C2 type 1, 83.9 2.3 8E-05 38.0 6.8 72 39-128 56-128 (147)
6 3pyc_A E3 ubiquitin-protein li 81.1 16 0.00055 32.0 11.0 96 41-159 30-130 (132)
7 3kwu_A MUNC13-1; calcium bindi 80.8 3 0.0001 37.3 6.3 112 20-159 20-144 (148)
8 2cm5_A Rabphilin-3A; protein t 79.4 6.7 0.00023 36.0 8.3 91 20-128 40-134 (166)
9 3n5a_A Synaptotagmin-7; calciu 78.9 6.6 0.00023 34.2 7.7 91 20-128 19-113 (138)
10 1wfj_A Putative elicitor-respo 77.8 2.3 8E-05 37.3 4.6 43 71-127 56-99 (136)
11 3b7y_A E3 ubiquitin-protein li 77.8 14 0.00049 33.0 9.8 90 20-130 23-117 (153)
12 1wfm_A Synaptotagmin XIII; C2 76.7 1.6 5.6E-05 39.1 3.3 88 20-127 29-118 (138)
13 1rsy_A Synaptotagmin I; calciu 76.4 8.7 0.0003 34.7 8.0 90 20-127 45-136 (152)
14 2r83_A Synaptotagmin-1; C2A-C2 74.8 19 0.00065 35.3 10.5 90 20-127 22-113 (284)
15 2z0u_A WW domain-containing pr 73.0 1.2 4.2E-05 41.5 1.6 46 71-127 94-140 (155)
16 2b3r_A Phosphatidylinositol-4- 72.5 7.2 0.00025 34.8 6.4 70 40-127 43-116 (134)
17 3fdw_A Synaptotagmin-like prot 72.2 9.5 0.00033 34.2 7.1 89 21-127 27-120 (148)
18 1v27_A Regulating synaptic mem 72.0 25 0.00087 30.7 9.7 90 21-127 25-120 (141)
19 2d8k_A Synaptotagmin VII; exoc 71.7 8.3 0.00028 34.2 6.5 92 20-128 29-122 (141)
20 1w15_A Synaptotagmin IV; metal 71.5 9.3 0.00032 34.3 6.9 89 20-126 33-125 (153)
21 3m7f_B E3 ubiquitin-protein li 71.4 6.7 0.00023 36.4 6.1 74 71-159 59-138 (176)
22 2ep6_A MCTP2 protein; beta san 71.3 26 0.00089 30.7 9.6 71 71-159 58-129 (133)
23 1rlw_A Phospholipase A2, CALB 70.5 11 0.00037 32.5 6.9 88 20-127 6-97 (126)
24 2dmh_A Myoferlin; beta-sandwic 68.6 19 0.00064 31.7 8.1 88 20-127 10-98 (140)
25 2dmg_A KIAA1228 protein; beta- 68.4 17 0.00059 32.1 7.9 91 21-129 28-123 (142)
26 1tjx_A Similar to synaptotagmi 67.8 2.8 9.7E-05 38.1 2.7 91 20-128 28-122 (159)
27 2chd_A Rabphilin-3A, exophilin 64.5 17 0.00057 32.2 7.0 91 20-128 32-127 (142)
28 1rh8_A Piccolo protein; beta-s 63.4 2.7 9.2E-05 37.2 1.6 91 20-128 21-125 (142)
29 1dqv_A Synaptotagmin III; beta 63.3 61 0.0021 32.4 11.6 89 20-126 23-114 (296)
30 2q3x_A Regulating synaptic mem 59.6 4.2 0.00014 37.9 2.3 88 20-128 33-126 (171)
31 1gmi_A Protein kinase C, epsil 58.3 7.1 0.00024 34.6 3.5 65 39-127 40-105 (136)
32 1a25_A CALB, protein kinase C 58.2 43 0.0015 30.0 8.5 89 20-127 34-126 (149)
33 3fbk_A RGS3, RGP3, regulator o 57.9 50 0.0017 29.9 9.0 88 21-127 31-122 (153)
34 2bwq_A Regulating synaptic mem 57.1 7.4 0.00025 33.7 3.3 92 20-128 21-118 (129)
35 2fk9_A Protein kinase C, ETA t 55.7 6.8 0.00023 37.3 3.0 90 38-159 61-154 (157)
36 1dqv_A Synaptotagmin III; beta 50.8 4.3 0.00015 40.7 0.9 48 71-129 202-250 (296)
37 2r83_A Synaptotagmin-1; C2A-C2 50.5 7.7 0.00027 38.0 2.6 47 71-128 200-247 (284)
38 1ijd_A Light-harvesting protei 47.0 10 0.00036 32.0 2.4 30 947-976 6-36 (53)
39 1nkz_A Light-harvesting protei 45.2 12 0.00039 31.8 2.4 29 949-977 8-37 (53)
40 2cjt_A UNC-13 homolog A, MUNC1 45.2 15 0.00052 33.1 3.5 44 70-127 45-88 (131)
41 3rdl_A Protein kinase C alpha 44.5 45 0.0015 28.9 6.3 60 49-127 51-111 (137)
42 2lme_A Adhesin YADA; trimeric 42.9 27 0.00091 31.8 4.7 33 563-595 13-45 (105)
43 2nq3_A Itchy homolog E3 ubiqui 42.4 33 0.0011 32.5 5.5 84 19-127 38-123 (173)
44 2cjs_A UNC-13 homolog A, MUNC1 40.3 16 0.00055 34.7 3.0 43 71-127 55-97 (167)
45 3l9b_A Otoferlin; C2-domain, b 37.7 21 0.00072 34.7 3.3 122 15-162 19-142 (144)
46 1dip_A Delta-sleep-inducing pe 25.9 58 0.002 29.3 3.8 37 553-589 9-48 (78)
47 2er8_A Regulatory protein Leu3 22.6 41 0.0014 27.4 2.1 22 564-585 47-68 (72)
48 2z5i_A TM, general control pro 22.0 62 0.0021 26.7 3.1 25 559-583 5-29 (52)
49 3ra3_B P2F; coiled coil domain 21.7 81 0.0028 23.5 3.2 23 564-589 5-27 (28)
50 1djx_A PLC-D1, phosphoinositid 20.7 3.1E+02 0.011 31.3 9.4 120 15-159 495-621 (624)
51 2yy0_A C-MYC-binding protein; 20.6 1.1E+02 0.0037 25.3 4.2 29 559-587 19-47 (53)
No 1
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.00026 Score=76.85 Aligned_cols=270 Identities=14% Similarity=0.172 Sum_probs=162.4
Q ss_pred ccccCchhhhhhHHHHHHhcccchhhhhHHHhhhccceEEEeecc-cCC-CCcchhhhhhHHHHHHHH--HHHhcCCCCC
Q 001938 603 MSKVHAPARRLSRLYLHACKEDFQSRRASAARSAVSGLVLVAKAC-GND-VPRLTFWLSNSIVLRAII--SQATGRLEQP 678 (993)
Q Consensus 603 ~hKvHtPARRLSRlYiHAcK~~s~~krAsaArn~vSGLVLVaKaC-GND-VpRLTFWlSN~iVLReII--sqa~~~~~~~ 678 (993)
.+-+-.||.=|-..-.|+.|.....++-+.--.++.++=-|.+.. |+| +..|.|||||+.-|--.+ .|......
T Consensus 44 ~~~~l~PA~il~~cl~~~~~~~~~~~~~~ll~~ii~~I~~~v~~~~~~d~i~~lafWLSN~~~LL~~L~~k~~~~~~~-- 121 (419)
T 2f6h_X 44 KRDVVYPARILIIVLSEMWRFGLTKQSESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFALNSILTE-- 121 (419)
T ss_dssp HHHHSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCcchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHhhhhhhcc--
Confidence 445668888877666667777444444344334444444444455 467 588999999999999988 44431000
Q ss_pred CccccccccCcccCCCCCCCCccccccccccccccccccCCCCCCCCC----cccHHHHHHhhHHHhhhhhhhhhhhc--
Q 001938 679 FAAGQSLERNSSQRGNNNITSPLKWKESASRKKDNRNVMRGSFDDWED----PHTLPSALEKVEAWIFSRIVESIWWQ-- 752 (993)
Q Consensus 679 ~~~~~~~~~ng~~~~~~~~~~~~~wk~~~~~k~~~~~~~~~~~~dW~e----~~Tf~~ALeKvEsWIFSRIVESVWWQ-- 752 (993)
+ + . ..++ ...+|.+ ...|...|+-+.-.||+.++..+-=.
T Consensus 122 ----------~-~--~---~~~~------------------~~~~~~~y~~l~~~~~~~L~~l~~~iy~~li~~l~k~L~ 167 (419)
T 2f6h_X 122 ----------E-T--F---KNGM------------------TDEEYKEYVSLVTELKDDFEALSYNIYNIWLKKLQKQLQ 167 (419)
T ss_dssp ----------C-C---------C------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------C-c--c---cccc------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 0000 0012221 33456678888889999877554311
Q ss_pred -ccCccccchhhcccccccCcccccccC-CcCCCCccccccchHHHHHHHHHHHHHhcCcCCCCCCCccchHHHHHHHHH
Q 001938 753 -TLTPHMQSAAERVMDRDIGSCSRKNLE-RTSSSGDQEQINFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIME 830 (993)
Q Consensus 753 -~lTPhMQs~~~~~~~~~~~s~s~k~~g-r~~~lgDq~Qg~fSI~LWK~AF~dA~eRlCPlRAgGHECGCLPVLaRlVME 830 (993)
.+.|-||.+..- + +-...+..| +...... +...+++-=-+-|...+..++ .|+==|.|.++++.
T Consensus 168 p~l~paIl~~~~~---~--~~~~~~~~~~~~k~~~~--~~~~~~~~Il~~L~~~~~~L~-------~~~V~~~l~~Q~fs 233 (419)
T 2f6h_X 168 KKAINAVVISESL---P--GFSAGETSGFLNKIFAN--TEEYTMDDILTFFNSIYWCMK-------SFHIENEVFHAVVT 233 (419)
T ss_dssp HHHHHHHTTSCSS---T--TTTC-----------------CCCHHHHHHHHHHHHHHHH-------HTTCCHHHHHHHHH
T ss_pred HHHHHHHhCcccc---c--ccccccccccccccccC--CCccCHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHH
Confidence 233444432210 0 000001011 0001111 112333322333333333332 35556999999999
Q ss_pred HHHHhhHHHHHHHHhhccCCCCCCCCCCCCCCCCcccccCCCCccccccchhhhhhhchHHHHhhhcCCCCCCCccccCC
Q 001938 831 QCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWLSDLFGMDDDDSLDNENE 910 (993)
Q Consensus 831 QCVaRLDVAMFNAILRESa~eiPTDPiSDPI~DskVLPIPaG~lSFGaGAQLKNaIGnWSRwLtDlfgid~dds~e~~~~ 910 (993)
|...=+++-+||.+|-.. +-.+|-.|.|+|--|..--.|+.+. |+.
T Consensus 234 Qlf~~In~~lFN~LL~r~-----------------------~~cs~s~G~qIr~nls~Le~W~~~~-~l~---------- 279 (419)
T 2f6h_X 234 TLLNYVDAICFNELIMKR-----------------------NFLSWKRGLQLNYNVTRLEEWCKTH-GLT---------- 279 (419)
T ss_dssp HHHHHHHHHHHHHHHTCS-----------------------SCCCHHHHHHHHHHHHHHHHHHHHT-TCT----------
T ss_pred HHHHHHHHHHHHHHhccC-----------------------cccchhhHHHHHhhHHHHHHHHHHc-CCh----------
Confidence 999999999999998532 2478999999999999999999883 331
Q ss_pred CCcccccccCCCcchhhhHhhhhccccchhhcccccchhhhccccchHHHHHHHH
Q 001938 911 HDADDERQDSSFKSFHLLNALSDLMMLPKDLLLSRSIRKEVSTRFLLALIVYLRY 965 (993)
Q Consensus 911 ~~~~~~~~~~~~k~F~LLNaLSDLLMLPKDML~d~SiRKEVCP~~~lpLIkR~~~ 965 (993)
.....|.=|+.++.||.++|.-+.|-....++||.++..=|.||+.
T Consensus 280 ---------~a~~~L~~l~Qa~~lLq~~k~~~~d~~~i~~~C~~Ln~~Ql~~il~ 325 (419)
T 2f6h_X 280 ---------DGTECLQHLIQTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLIS 325 (419)
T ss_dssp ---------THHHHTHHHHHHHHHTTSCCSSHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHhhcCCHHHHHHHHH
Confidence 0122477788999999999998888888999999999888888653
No 2
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.028 Score=61.52 Aligned_cols=282 Identities=13% Similarity=0.137 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCccccCchhhhhhHHHHHHhcccchhhhhHHHhhhccceEEEeec-c
Q 001938 569 QQLEHKINMLETELREAAAIEASLYSVVAEHGSSMSKVHAPARRLSRLYLHACKEDFQSRRASAARSAVSGLVLVAKA-C 647 (993)
Q Consensus 569 ~ele~kie~LE~ELREaAAlEvsLYSVVaEHGSS~hKvHtPARRLSRlYiHAcK~~s~~krAsaArn~vSGLVLVaKa-C 647 (993)
+||...++.+..+-.|+. |-=|.. ||.=--+..=|-.||+=|.-.-=|+-|..-..+--+.--++++++==+.+. =
T Consensus 17 ~el~~ll~d~~~~~~ei~--~gl~~~-ip~~~~~~~evl~PA~ii~~~~~~m~~~gl~~~s~~fl~~v~~~I~~~v~~~~ 93 (386)
T 3mmi_A 17 PDLLELLMDLNCYTLEVT--EGYLKK-VNVTEVNGDNVLGPIHVITTVVSSLVRNGLLIQSSKFISKVLLTVESIVMSLP 93 (386)
T ss_dssp -CHHHHHHCHHHHHHHHH--HHTSTT-CCCSCCCC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhHHHHH--HHHhhc-CCCCCCCccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444444444444444442 222333 555445666788999999888888877655333222222222222212244 3
Q ss_pred cCC-CCcchhhhhhHHHHHHHHHHHhcCCCCCCccccccccCcccCCCCCCCCccccccccccccccccccCCCCCCCCC
Q 001938 648 GND-VPRLTFWLSNSIVLRAIISQATGRLEQPFAAGQSLERNSSQRGNNNITSPLKWKESASRKKDNRNVMRGSFDDWED 726 (993)
Q Consensus 648 GND-VpRLTFWlSN~iVLReIIsqa~~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~wk~~~~~k~~~~~~~~~~~~dW~e 726 (993)
|.| ++...|||||+--|+.-|.-+-.. ... +.|++
T Consensus 94 ~~d~i~~g~FWLsN~~~l~sFv~~~q~~----------~~~----------------------------------~~~d~ 129 (386)
T 3mmi_A 94 KDETMLGGIFWLSNLSRLPAFAANQKTL----------YEA----------------------------------NGGDE 129 (386)
T ss_dssp TTTHHHHHHHHHHHHTTHHHHHHHHHTT----------C-----------------------------------------
T ss_pred CccccccchHHHHhHHHHHHHHHHHHHH----------HHc----------------------------------cChhH
Confidence 788 899999999997777754443210 000 01333
Q ss_pred cccH----HHHHHhhHH----HhhhhhhhhhhhcccCccccchhhcccccccCcccccccCCcCCCCccccccchHHHHH
Q 001938 727 PHTL----PSALEKVEA----WIFSRIVESIWWQTLTPHMQSAAERVMDRDIGSCSRKNLERTSSSGDQEQINFSLDHWK 798 (993)
Q Consensus 727 ~~Tf----~~ALeKvEs----WIFSRIVESVWWQ~lTPhMQs~~~~~~~~~~~s~s~k~~gr~~~lgDq~Qg~fSI~LWK 798 (993)
-..+ -..|+.++- .||.-++..+= ..|.|.. |+.. +...+|.. + ....++++-=-
T Consensus 130 y~~ll~e~r~~l~~L~~~~~e~IY~~~i~~lk-k~L~~il--P~~~------~~~~~k~~------~--~~~~~s~~~Il 192 (386)
T 3mmi_A 130 KDKLTLIYLNDLENETLKVFDKIYSTWLVKFM-KHASAHI--EIFD------MVLNEKLF------K--NSGDEKFAKLF 192 (386)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--THHH------HHTCGGGS------S--SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHhhc--cccc------cccccccc------C--CCCccCHHHHH
Confidence 3333 335677777 88875544431 0111211 1211 11122222 1 12345543333
Q ss_pred HHHHHHHHhcCcCCCCCCCccchHHHHHHHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCCCCCCcccccCCCCccccc
Q 001938 799 KAFKDACERLCPVRARGHECGCLPLLARLIMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGA 878 (993)
Q Consensus 799 ~AF~dA~eRlCPlRAgGHECGCLPVLaRlVMEQCVaRLDVAMFNAILRESa~eiPTDPiSDPI~DskVLPIPaG~lSFGa 878 (993)
+-|...+..|+ .|+==|.|.++++.|...=+++-+||.+|-. .+-.+|-.
T Consensus 193 ~~L~~~~~~L~-------~~~V~p~li~QlfsQLF~fIna~lFN~LLlR-----------------------r~~cs~s~ 242 (386)
T 3mmi_A 193 TFLNEFDAVLC-------KFQVVDSMHTKIFNDTLKYLNVMLFNDLITK-----------------------CPALNWKY 242 (386)
T ss_dssp HHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------CCCBCHHH
T ss_pred HHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHhHHHHHHHHcc-----------------------CcccCcch
Confidence 33333333332 3455599999999999999999999999853 24689999
Q ss_pred cchhhhhhhchHHHHhhhcCCCCCCCccccCCCCcccccccCCCcchhhhHhhhhccccchhhcccccchhhhccccchH
Q 001938 879 GAQLKNAIGNWSRWLSDLFGMDDDDSLDNENEHDADDERQDSSFKSFHLLNALSDLMMLPKDLLLSRSIRKEVSTRFLLA 958 (993)
Q Consensus 879 GAQLKNaIGnWSRwLtDlfgid~dds~e~~~~~~~~~~~~~~~~k~F~LLNaLSDLLMLPKDML~d~SiRKEVCP~~~lp 958 (993)
|.|+|--|..--.|+.. |+.. ....|.=|+.++.||-+||.-+.|-.+-.++||.++..
T Consensus 243 G~qIr~NLs~LEeW~~~--~l~~-------------------a~~~L~~L~QA~~LLQ~~K~t~~Di~~i~~~C~~Lsp~ 301 (386)
T 3mmi_A 243 GYEVDRNIERLVSWFEP--RIED-------------------VRPNLIQIIQAVKILQLKISNLNEFKLLFDFWYALNPA 301 (386)
T ss_dssp HHHHHHHHHHHHHHHTT--TSSC-------------------CGGGGHHHHHHHHHHHCCCCCHHHHHHHHTTCCSSCHH
T ss_pred HHHHHhhHHHHHHHHHh--ccHH-------------------HHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcccCCHH
Confidence 99999999999999987 4321 11368889999999999998888887778999999988
Q ss_pred HHHHHHH
Q 001938 959 LIVYLRY 965 (993)
Q Consensus 959 LIkR~~~ 965 (993)
=|.||+.
T Consensus 302 QL~kIL~ 308 (386)
T 3mmi_A 302 QIQAILL 308 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888763
No 3
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=90.48 E-value=1.9 Score=38.17 Aligned_cols=104 Identities=13% Similarity=0.222 Sum_probs=66.0
Q ss_pred EEEeeeecCCCCCccc--cccceeEEEeecCCCCCCCcccccCCCcccccCceEEeecceeee-EEEEeecccCCCCccc
Q 001938 20 QIHIQDIKPWPPSQSL--RSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLR-VTLLRDMNVKNKDADT 96 (993)
Q Consensus 20 ~IhIqeIKPWPpSqSL--rSlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~-vtL~ke~s~kg~~~~~ 96 (993)
.|+|.+-+-.|+.... .+=.-|.+...++.+....|.++--+ -.=.|||.|.++ +.. +.
T Consensus 25 ~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~~v~~-----------~~ 86 (138)
T 1ugk_A 25 VVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKT-------LDPAFDETFTFYGIPY-----------TQ 86 (138)
T ss_dssp EEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSC-------SSCEEEEEEEEECCCS-----------TT
T ss_pred EEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCC-------CCCcEeeEEEEcCcCH-----------HH
Confidence 5677777777765432 23345677776655567777766322 234699999875 221 23
Q ss_pred ccccceEEeecccccc-cccccceeeeccccccccccccccccccc
Q 001938 97 FLKNCLEFNLYEPRRD-KTQLLATATIDLADYGIVKETLSVNAPMN 141 (993)
Q Consensus 97 FqKN~LEfnLyE~rrd-K~QlLGtA~idLADyGii~e~~sis~p~n 141 (993)
++...|.|.+|+-.+- +-.+||.+.|+|+++-.-.+....-.++-
T Consensus 87 ~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~ 132 (138)
T 1ugk_A 87 IQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp GGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred hccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhh
Confidence 4567899999986442 22899999999999755444444444443
No 4
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=86.57 E-value=2.3 Score=37.79 Aligned_cols=91 Identities=16% Similarity=0.152 Sum_probs=58.4
Q ss_pred EEEeeeecCCCCCccc-cccceeEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 001938 20 QIHIQDIKPWPPSQSL-RSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (993)
Q Consensus 20 ~IhIqeIKPWPpSqSL-rSlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (993)
.|+|.+-+--|+.... .+=.-|.+..-+++.....|.++--+ -.=.|||.|.+++.. +...
T Consensus 37 ~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~-----------~~l~ 98 (143)
T 3f04_A 37 LVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT-------LNPVFNEQFTFKVPY-----------SELG 98 (143)
T ss_dssp EEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSC-------SSCEEEEEEEECCCH-----------HHHT
T ss_pred EEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCC-------CCCcCcCeEEEeecH-----------hhcC
Confidence 4667666666654432 12234666665555667777766322 224699999887532 2234
Q ss_pred ccceEEeecccccc-cccccceeeecccccc
Q 001938 99 KNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (993)
Q Consensus 99 KN~LEfnLyE~rrd-K~QlLGtA~idLADyG 128 (993)
...|.|.+|+-.+- +-.+||.+.|+|+++-
T Consensus 99 ~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~ 129 (143)
T 3f04_A 99 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD 129 (143)
T ss_dssp TCEEEEEEEECCSSSCCEEEEEEEEEGGGCC
T ss_pred CCEEEEEEEeCCCCCCCceEEEEEEEHHHcc
Confidence 47899999986542 2289999999999873
No 5
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.89 E-value=2.3 Score=38.03 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=49.9
Q ss_pred ceeEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcccccccceEEeecccccc-ccccc
Q 001938 39 RSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLL 117 (993)
Q Consensus 39 rsVllqWENGd~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~rrd-K~QlL 117 (993)
.-|.+...++.+....|.++--++ .=.|||.|.+++.. +..+...|.|.+|+-.+- +-.+|
T Consensus 56 pyv~v~l~~~~~~~~kT~v~~~t~-------nP~wne~f~f~v~~-----------~~l~~~~L~~~V~d~d~~~~~~~i 117 (147)
T 2enp_A 56 PYVKICLLPDQKNSKQTGVKRKTQ-------KPVFEERYTFEIPF-----------LEAQRRTLLLTVVDFDKFSRHCVI 117 (147)
T ss_dssp CEEEEEEETCCSSCEECCCCCSCS-------SCCCCBCCEECCCH-----------HHHHHSEEEEEEECCSTTCCSCCC
T ss_pred cEEEEEEEeCCCcceEeecccCCC-------CCeEeeeEEEEeCh-----------HHhccCEEEEEEEECCCCcCCcEE
Confidence 467777776666677777663222 24799999987531 223456899999987542 22899
Q ss_pred ceeeecccccc
Q 001938 118 ATATIDLADYG 128 (993)
Q Consensus 118 GtA~idLADyG 128 (993)
|.+.|+|+++.
T Consensus 118 G~~~i~l~~l~ 128 (147)
T 2enp_A 118 GKVSVPLCEVD 128 (147)
T ss_dssp EEEEEETTTSC
T ss_pred EEEEEechhcC
Confidence 99999999873
No 6
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=81.05 E-value=16 Score=32.02 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=56.3
Q ss_pred eEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcccccccceEEeeccccccc----ccc
Q 001938 41 VMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDK----TQL 116 (993)
Q Consensus 41 VllqWENGd~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~rrdK----~Ql 116 (993)
|.+.. +++.....|.++--++ .=.|||.|.+++.- . + .|.|.+|+-..-. -.+
T Consensus 30 v~v~~-~~~~~~~kT~v~~~t~-------nP~wne~f~f~v~~-------~------~--~l~~~v~d~d~~~~~~~d~~ 86 (132)
T 3pyc_A 30 AKIVV-DGSGQCHSTDTVKNTL-------DPKWNQHYDLYVGK-------T------D--SITISVWNHKKIHKKQGAGF 86 (132)
T ss_dssp EEEEE-TTTCCEEECCCCSSCS-------SCEEEEEEEEEEET-------T------C--CEEEEEEEGGGTTSSTTTTE
T ss_pred EEEEE-CCCCceEECCccCCCC-------CCCccCEEEEEeCC-------C------C--EEEEEEEECCCCCCCCCCCc
Confidence 44443 4434556666662221 24699999887621 1 1 3999999876532 379
Q ss_pred cceeeecccccccccccccccccccccc-ccccCCCceEEEEee
Q 001938 117 LATATIDLADYGIVKETLSVNAPMNSKR-SFRNTAQPVLFIKIQ 159 (993)
Q Consensus 117 LGtA~idLADyGii~e~~sis~p~n~Kr-s~rn~~qP~lyv~Iq 159 (993)
||.+.|+|++..-..+......++.-+. .-....+-.|.|.|+
T Consensus 87 lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~ 130 (132)
T 3pyc_A 87 LGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQ 130 (132)
T ss_dssp EEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEE
T ss_pred eEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEE
Confidence 9999999988755555444445554321 122233556666654
No 7
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=80.77 E-value=3 Score=37.27 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=63.1
Q ss_pred EEEeeeecCCCCCccc-cccceeEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 001938 20 QIHIQDIKPWPPSQSL-RSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (993)
Q Consensus 20 ~IhIqeIKPWPpSqSL-rSlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (993)
.|+|.+-+-.|+.... .+=.-|.+... . ....|.++--+ -.=.|||.|.+++.. .
T Consensus 20 ~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~-~~~kT~~~~~t-------~nP~Wne~f~f~v~~------~-------- 75 (148)
T 3kwu_A 20 SITVVCAQGLQAKDKTGSSDPYVTVQVG--K-TKKRTKTIYGN-------LNPVWEENFHFECHN------S-------- 75 (148)
T ss_dssp EEEEEEEESCCCCSTTSCCCEEEEEEET--T-EEEECCCCCSC-------SSCEEEEEEEEEECS------T--------
T ss_pred EEEEEeeeCCCCCCCCCCcCeEEEEEEC--C-EEEECCccCCC-------CCCCcccEEEEEecC------C--------
Confidence 3455555555543221 12234555552 2 33455555322 223699999887741 0
Q ss_pred ccceEEeecccccc------------cccccceeeeccccccccccccccccccccccccccCCCceEEEEee
Q 001938 99 KNCLEFNLYEPRRD------------KTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQ 159 (993)
Q Consensus 99 KN~LEfnLyE~rrd------------K~QlLGtA~idLADyGii~e~~sis~p~n~Krs~rn~~qP~lyv~Iq 159 (993)
...|.|.+|+-... +-.+||.+.|+|.+++ .....-.|+. ++......+-.|.|+|.
T Consensus 76 ~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~---~~~~~w~~L~-~~~~~~~~~G~i~l~l~ 144 (148)
T 3kwu_A 76 SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS---GEMDVWYNLD-KRTDKSAVSGAIRLHIS 144 (148)
T ss_dssp TCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC---SEEEEEEECB-CSSTTCCCCCEEEEEEE
T ss_pred CCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc---CCCCEEEEcc-cCCCCCCCceEEEEEEE
Confidence 13699999987653 3489999999999983 2333445555 33333334556666654
No 8
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=79.40 E-value=6.7 Score=35.96 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=56.4
Q ss_pred EEEeeeecCCCCCcccc-ccceeEEEeecCC--CCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccc
Q 001938 20 QIHIQDIKPWPPSQSLR-SLRSVMIQWQNGD--RNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADT 96 (993)
Q Consensus 20 ~IhIqeIKPWPpSqSLr-SlrsVllqWENGd--~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~ 96 (993)
.|+|.+-+--|+..... +=.-|.+....+. .....|.++-- .-.=.|||.|.+++.. +.
T Consensus 40 ~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-------t~nP~wne~f~f~v~~-----------~~ 101 (166)
T 2cm5_A 40 IVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK-------TLNPEFNEEFFYDIKH-----------SD 101 (166)
T ss_dssp EEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCS-------CSSCEEEEEEEEECCG-----------GG
T ss_pred EEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccC-------CCCCcccceEEEEcch-----------Hh
Confidence 46666666666543221 2234555554422 34556666521 2236799999987632 12
Q ss_pred ccccceEEeeccccccc-ccccceeeecccccc
Q 001938 97 FLKNCLEFNLYEPRRDK-TQLLATATIDLADYG 128 (993)
Q Consensus 97 FqKN~LEfnLyE~rrdK-~QlLGtA~idLADyG 128 (993)
.+...|.|.+|+-.+-. -.+||.+.|+|.+.|
T Consensus 102 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 102 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp GGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH
T ss_pred cCCCEEEEEEEECCCCCCCcEEEeEEEecccCC
Confidence 44678999999875532 389999999999865
No 9
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=78.91 E-value=6.6 Score=34.18 Aligned_cols=91 Identities=12% Similarity=0.114 Sum_probs=54.5
Q ss_pred EEEeeeecCCCCCccc-cccceeEEEeecCCC--CCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccc
Q 001938 20 QIHIQDIKPWPPSQSL-RSLRSVMIQWQNGDR--NSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADT 96 (993)
Q Consensus 20 ~IhIqeIKPWPpSqSL-rSlrsVllqWENGd~--~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~ 96 (993)
.|+|.+-+--|+.... .+=.-|.+...++++ ....|.++--+ -.=.|||.|.+++. .+.
T Consensus 19 ~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t-------~nP~wne~f~f~v~-----------~~~ 80 (138)
T 3n5a_A 19 IVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRN-------LNPIFNESFAFDIP-----------TEK 80 (138)
T ss_dssp EEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSC-------SSCEEEEEEEEECC-----------GGG
T ss_pred EEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCC-------CCCcCcceEEEECC-----------hhh
Confidence 5666666655554322 122345555544322 34556555322 22479999988743 123
Q ss_pred ccccceEEeecccccc-cccccceeeecccccc
Q 001938 97 FLKNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (993)
Q Consensus 97 FqKN~LEfnLyE~rrd-K~QlLGtA~idLADyG 128 (993)
.+...|.|.+|+-.+- +-.+||.+.|+|.+.+
T Consensus 81 l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 81 LRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp GGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH
T ss_pred cCceEEEEEEEECCCCCCCcEEEEEEEccccCC
Confidence 4567899999986543 2389999999998743
No 10
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=77.83 E-value=2.3 Score=37.33 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=33.8
Q ss_pred EEeecceeeeEEEEeecccCCCCcccccccceEEeecccccc-cccccceeeeccccc
Q 001938 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADY 127 (993)
Q Consensus 71 IeFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~rrd-K~QlLGtA~idLADy 127 (993)
=.|||.|.+++. + ....|.|.+|+-.+- +-.+||.+.|+|.++
T Consensus 56 P~Wne~f~f~v~---~-----------~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l 99 (136)
T 1wfj_A 56 PEWNETFIFTVS---E-----------GTTELKAKIFDKDVGTEDDAVGEATIPLEPV 99 (136)
T ss_dssp CEEEEEEEEEEE---S-----------SCCEEEEEECCSSSCTTTCCSEEEEEESHHH
T ss_pred CccCcEEEEEEC---C-----------CCCEEEEEEEECCCCCCCceEEEEEEEHHHh
Confidence 579999999876 1 234799999987542 338999999999986
No 11
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=77.76 E-value=14 Score=33.00 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=51.0
Q ss_pred EEEeeeecCCCCCccc-cccceeEEEeecCC---CCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcc
Q 001938 20 QIHIQDIKPWPPSQSL-RSLRSVMIQWQNGD---RNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDAD 95 (993)
Q Consensus 20 ~IhIqeIKPWPpSqSL-rSlrsVllqWENGd---~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~ 95 (993)
.|+|.+-+-.|+.... .+=.-|.+...... .....|.++--+ -.=.|||.|.+++.-
T Consensus 23 ~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~------------ 83 (153)
T 3b7y_A 23 RVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKS-------LNPKWNEEILFRVHP------------ 83 (153)
T ss_dssp EEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSC-------SSCCCCEEEEEEECT------------
T ss_pred EEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCC-------CCCCCCCEEEEEecC------------
Confidence 4455555555543322 12234555555322 234556555322 224689999988641
Q ss_pred cccccceEEeecccccc-cccccceeeecccccccc
Q 001938 96 TFLKNCLEFNLYEPRRD-KTQLLATATIDLADYGIV 130 (993)
Q Consensus 96 ~FqKN~LEfnLyE~rrd-K~QlLGtA~idLADyGii 130 (993)
....|.|.+|+-.+- +-.+||.+.|+|.++-.-
T Consensus 84 --~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 117 (153)
T 3b7y_A 84 --QQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTE 117 (153)
T ss_dssp --TTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBC
T ss_pred --CCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccC
Confidence 125799999987553 238999999999986443
No 12
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=76.75 E-value=1.6 Score=39.10 Aligned_cols=88 Identities=10% Similarity=0.005 Sum_probs=51.6
Q ss_pred EEEeeeecCCCCCccccccceeEEEeecC-CCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 001938 20 QIHIQDIKPWPPSQSLRSLRSVMIQWQNG-DRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (993)
Q Consensus 20 ~IhIqeIKPWPpSqSLrSlrsVllqWENG-d~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (993)
.|+|.+-++ ....=.+=.-|.+.-.++ .+....|.++--+ =.=.|||.|.+++.. +..+
T Consensus 29 ~V~v~~a~~--~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~t-------lnP~wnE~f~f~v~~-----------~~l~ 88 (138)
T 1wfm_A 29 FVTRLEAVT--SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQ-------LHTTWEEGLVLPLAE-----------EELP 88 (138)
T ss_dssp EEEEEEEEC--CCCSSCCCEEEEEEEEETTEEEEEECCCCCCC-------SSEECSSCEEEECCT-----------TSST
T ss_pred EEEEEEEEc--CCCCCCcceEEEEEEEcCCCcccEecccCcCC-------CCCcCCceEEEEecH-----------HHcC
Confidence 466667663 221112223455544332 2333455554221 225799999988531 1234
Q ss_pred ccceEEeecccccc-cccccceeeeccccc
Q 001938 99 KNCLEFNLYEPRRD-KTQLLATATIDLADY 127 (993)
Q Consensus 99 KN~LEfnLyE~rrd-K~QlLGtA~idLADy 127 (993)
...|.|.+|+-.+- +-.+||.+.|+|+++
T Consensus 89 ~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l 118 (138)
T 1wfm_A 89 TATLTLTLRTCDRFSRHSVAGELRLGLDGT 118 (138)
T ss_dssp TCEEEEEEEECCSSCTTSCSEEEEEESSSS
T ss_pred CCEEEEEEEECCCCCCCcEEEEEEEEcccc
Confidence 56799999987442 228999999999997
No 13
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=76.40 E-value=8.7 Score=34.72 Aligned_cols=90 Identities=17% Similarity=0.150 Sum_probs=56.8
Q ss_pred EEEeeeecCCCCCcccc-ccceeEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 001938 20 QIHIQDIKPWPPSQSLR-SLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (993)
Q Consensus 20 ~IhIqeIKPWPpSqSLr-SlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (993)
.|+|.+-+--|+..... +=.-|.+...++++....|.++--+ -.=.|||.|.+++.. +...
T Consensus 45 ~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~-----------~~l~ 106 (152)
T 1rsy_A 45 LVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT-------LNPVFNEQFTFKVPY-----------SELG 106 (152)
T ss_dssp EEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTC-------SSCEEEEEEEECCCH-----------HHHT
T ss_pred EEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCC-------CCCcCcccEEEeecH-----------HHcC
Confidence 45666666666543221 1234556665555566667766322 235799999986532 1234
Q ss_pred ccceEEeecccccc-cccccceeeeccccc
Q 001938 99 KNCLEFNLYEPRRD-KTQLLATATIDLADY 127 (993)
Q Consensus 99 KN~LEfnLyE~rrd-K~QlLGtA~idLADy 127 (993)
...|.|.+|+-.+- +-.+||.+.|+|+++
T Consensus 107 ~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l 136 (152)
T 1rsy_A 107 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 136 (152)
T ss_dssp TCEEEEEEEECCSSSCCEEEEEEEEEGGGC
T ss_pred CCEEEEEEEECCCCCCCcEEEEEEEEchhc
Confidence 57899999987542 238999999999986
No 14
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=74.76 E-value=19 Score=35.30 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=56.8
Q ss_pred EEEeeeecCCCCCccc-cccceeEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 001938 20 QIHIQDIKPWPPSQSL-RSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (993)
Q Consensus 20 ~IhIqeIKPWPpSqSL-rSlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (993)
.|+|.+-+-.|+.... .+=.-|.+...++++....|.++--+ =.=.|||.|.+++.. +..+
T Consensus 22 ~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~-------~nP~wne~f~f~v~~-----------~~~~ 83 (284)
T 2r83_A 22 LVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT-------LNPVFNEQFTFKVPY-----------SELA 83 (284)
T ss_dssp EEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSC-------SSCEEEEEEEECCCG-----------GGCT
T ss_pred EEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCC-------CCCeeCceEEEEech-----------HHhC
Confidence 3555565555543321 22335677776655556667666322 234699999987531 1245
Q ss_pred ccceEEeecccccc-cccccceeeeccccc
Q 001938 99 KNCLEFNLYEPRRD-KTQLLATATIDLADY 127 (993)
Q Consensus 99 KN~LEfnLyE~rrd-K~QlLGtA~idLADy 127 (993)
...|.|.+|+-.+- +-.+||.+.|+|.++
T Consensus 84 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l 113 (284)
T 2r83_A 84 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 113 (284)
T ss_dssp TCEEEEEEEECCSSSCCCEEEEEEEEGGGC
T ss_pred cCEEEEEEEECCCCCCCceeEEEEEcchhc
Confidence 56899999986542 238999999999986
No 15
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=73.03 E-value=1.2 Score=41.46 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=35.7
Q ss_pred EEeecceeeeEEEEeecccCCCCcccccccceEEeecccccccc-cccceeeeccccc
Q 001938 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKT-QLLATATIDLADY 127 (993)
Q Consensus 71 IeFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~rrdK~-QlLGtA~idLADy 127 (993)
=.|||.|.+++.. +..+...|+|.+|+-.+... .+||.+.|+|+++
T Consensus 94 P~wnE~F~f~v~~-----------~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l 140 (155)
T 2z0u_A 94 LVFNEVFWVSMSY-----------PALHQKTLRVDVCTTDRSHLEECLGGAQISLAEV 140 (155)
T ss_dssp EEEEEEEEEECCH-----------HHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTS
T ss_pred CccccEEEEEcCH-----------HHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHc
Confidence 5799999988642 23456789999998754322 8999999999986
No 16
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=72.48 E-value=7.2 Score=34.84 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=44.9
Q ss_pred eeEEEeecC--CCCCCCcccccCCCcccccCceEEeecceeee-EEEEeecccCCCCcccccccceEEeeccccccc-cc
Q 001938 40 SVMIQWQNG--DRNSGSTKTVGPSLGSVIGEGKIEFNESFRLR-VTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDK-TQ 115 (993)
Q Consensus 40 sVllqWENG--d~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~-vtL~ke~s~kg~~~~~FqKN~LEfnLyE~rrdK-~Q 115 (993)
-|.+..-.+ ......|.++-=+ -.=.|||.|.++ +.. +..+...|.|.+|+-.+-. -.
T Consensus 43 yv~v~l~~~~~~~~~~kT~v~~~t-------~nP~wnE~f~f~~v~~-----------~~l~~~~L~~~V~d~d~~~~~~ 104 (134)
T 2b3r_A 43 YVKTYLLPDTHKTSKRKTKISRKT-------RNPTFNEMLVYSGYSK-----------ETLRQRELQLSVLSAESLRENF 104 (134)
T ss_dssp EEEEEEESCSSSCCCEECCCCCSC-------SSCEEEEEEEEESCCH-----------HHHTTCEEEEEEEECCSSSCCE
T ss_pred EEEEEEEcCCCCCceecCCcCcCC-------CCCCCccEEEECCcCH-----------HHhCcCEEEEEEEECCCCCCCc
Confidence 455555332 3445566665221 124699999887 532 2234568999999875432 28
Q ss_pred ccceeeeccccc
Q 001938 116 LLATATIDLADY 127 (993)
Q Consensus 116 lLGtA~idLADy 127 (993)
+||.+.|+|++.
T Consensus 105 ~lG~~~i~l~~l 116 (134)
T 2b3r_A 105 FLGGITLPLKDF 116 (134)
T ss_dssp EEEEEEEEGGGS
T ss_pred EEEEEEEEhhhc
Confidence 999999999987
No 17
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=72.23 E-value=9.5 Score=34.20 Aligned_cols=89 Identities=15% Similarity=0.251 Sum_probs=51.8
Q ss_pred EEeeeecCCCCCcc--ccccceeEEEeecCCC--CCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccc
Q 001938 21 IHIQDIKPWPPSQS--LRSLRSVMIQWQNGDR--NSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADT 96 (993)
Q Consensus 21 IhIqeIKPWPpSqS--LrSlrsVllqWENGd~--~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~ 96 (993)
|+|.+-+--|+... -.+=.-|.+....+.+ ....|.++--++ .=.|||.|.+++.. +.
T Consensus 27 V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~-------nP~wne~f~f~v~~-----------~~ 88 (148)
T 3fdw_A 27 VHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTV-------NPLYDETLRYEIPE-----------SL 88 (148)
T ss_dssp EEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCS-------SCEEEEEEEEECCS-----------TT
T ss_pred EEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCC-------CCcEeeEEEEEeCh-----------hH
Confidence 55555554444331 1122345555543332 244555552221 24799999887421 12
Q ss_pred ccccceEEeeccccccc-ccccceeeeccccc
Q 001938 97 FLKNCLEFNLYEPRRDK-TQLLATATIDLADY 127 (993)
Q Consensus 97 FqKN~LEfnLyE~rrdK-~QlLGtA~idLADy 127 (993)
.+...|.|.+|+-.+-. -.+||.+.|+|+++
T Consensus 89 ~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l 120 (148)
T 3fdw_A 89 LAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSW 120 (148)
T ss_dssp GGGCEEEEEEEEECGGGCEEEEEEEEEEHHHH
T ss_pred hCceEEEEEEEECCCCcCCcEEEEEEEEcccc
Confidence 45678999999864422 28999999999987
No 18
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=72.00 E-value=25 Score=30.68 Aligned_cols=90 Identities=26% Similarity=0.361 Sum_probs=52.7
Q ss_pred EEeeeecCCCCCcccc-ccceeEEEeec--CCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcccc
Q 001938 21 IHIQDIKPWPPSQSLR-SLRSVMIQWQN--GDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTF 97 (993)
Q Consensus 21 IhIqeIKPWPpSqSLr-SlrsVllqWEN--Gd~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~F 97 (993)
|+|.+-+--|+..... +=.-|.+..-. +......|.++--++ .=.|||.|.+++.- .+..
T Consensus 25 v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~-------nP~wne~f~f~~~~----------~~~~ 87 (141)
T 1v27_A 25 VTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTL-------EPKWNQTFIYSPVH----------RREF 87 (141)
T ss_dssp EEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCS-------SCCCCCCCEECSCC----------TTGG
T ss_pred EEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCC-------CCccccEEEEccCC----------HHHh
Confidence 4555555445433211 11234444422 234556666663322 24699999887311 1234
Q ss_pred cccceEEeeccccccc---ccccceeeeccccc
Q 001938 98 LKNCLEFNLYEPRRDK---TQLLATATIDLADY 127 (993)
Q Consensus 98 qKN~LEfnLyE~rrdK---~QlLGtA~idLADy 127 (993)
....|.|.+|+-.+-. -.+||.+.|+|++.
T Consensus 88 ~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l 120 (141)
T 1v27_A 88 RERMLEITLWDQARVREEESEFLGEILIELETA 120 (141)
T ss_dssp GTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGC
T ss_pred cCCEEEEEEEECCCCcCCCCceEEEEEEEcccc
Confidence 5578999999876633 48999999999985
No 19
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.66 E-value=8.3 Score=34.22 Aligned_cols=92 Identities=15% Similarity=0.141 Sum_probs=55.6
Q ss_pred EEEeeeecCCCCCcccc-ccceeEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 001938 20 QIHIQDIKPWPPSQSLR-SLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (993)
Q Consensus 20 ~IhIqeIKPWPpSqSLr-SlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (993)
.|+|.+-+-.|+..... +=.-|.+...++++....|.++--+ -.=.|||.|.+++. ..+...
T Consensus 29 ~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~~~----------~~~~~~ 91 (141)
T 2d8k_A 29 TVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKN-------LNPHWNETFLFEGF----------PYEKVV 91 (141)
T ss_dssp EEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTC-------SSCCCCEEEEECSC----------CHHHHT
T ss_pred EEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCC-------CCCccccEEEECcc----------CHHHcc
Confidence 45666666555443211 2235666665555555666665222 22468999987631 012234
Q ss_pred ccceEEeecccccc-cccccceeeecccccc
Q 001938 99 KNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (993)
Q Consensus 99 KN~LEfnLyE~rrd-K~QlLGtA~idLADyG 128 (993)
...|.|.+|+-.+- +-.+||.+.|+|.++-
T Consensus 92 ~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~ 122 (141)
T 2d8k_A 92 QRILYLQVLDYDRFSRNDPIGEVSIPLNKVD 122 (141)
T ss_dssp TSEEEEEEEECCSSSSCEEEEEEEEETTTSC
T ss_pred cCEEEEEEEECCCCCCCcEEEEEEEEhhhhc
Confidence 56799999987552 2389999999999863
No 20
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=71.46 E-value=9.3 Score=34.35 Aligned_cols=89 Identities=13% Similarity=0.217 Sum_probs=53.1
Q ss_pred EEEeeeecCCCCCccc-cccceeEEEeecCCCC--CCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccc
Q 001938 20 QIHIQDIKPWPPSQSL-RSLRSVMIQWQNGDRN--SGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADT 96 (993)
Q Consensus 20 ~IhIqeIKPWPpSqSL-rSlrsVllqWENGd~~--SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~ 96 (993)
.|+|.+-+--|+.... .+=.-|.+..-++.+. ...|.++-- .-.=.|||.|.+++.. +.
T Consensus 33 ~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-------t~nP~wne~f~f~v~~-----------~~ 94 (153)
T 1w15_A 33 TVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-------TPNAVFNELFVFDIPC-----------ES 94 (153)
T ss_dssp EEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCS-------CSSEEEEEEEEEECCS-----------SS
T ss_pred EEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccC-------CCCCeecceEEEECCH-----------HH
Confidence 4666666666654321 1223455555443322 445665521 2346899999987532 12
Q ss_pred ccccceEEeecccccc-cccccceeeecccc
Q 001938 97 FLKNCLEFNLYEPRRD-KTQLLATATIDLAD 126 (993)
Q Consensus 97 FqKN~LEfnLyE~rrd-K~QlLGtA~idLAD 126 (993)
.+...|.|.+|+-.+- +-.+||.+.|+|.+
T Consensus 95 l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 95 LEEISVEFLVLDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp STTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred hCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence 4557899999987543 23899999999988
No 21
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=71.38 E-value=6.7 Score=36.38 Aligned_cols=74 Identities=14% Similarity=0.277 Sum_probs=43.0
Q ss_pred EEeecceeeeEEEEeecccCCCCcccccccceEEeecccccc-cccccceeeeccccccccccccc-----ccccccccc
Q 001938 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYGIVKETLS-----VNAPMNSKR 144 (993)
Q Consensus 71 IeFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~rrd-K~QlLGtA~idLADyGii~e~~s-----is~p~n~Kr 144 (993)
=.|||.|.+++. . ....|.|.+|+-.+- +-.+||.+.|+|+++-.-..... .-.|+.-+.
T Consensus 59 P~Wne~f~f~v~------~--------~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~ 124 (176)
T 3m7f_B 59 PKWNEEILFRVL------P--------QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRS 124 (176)
T ss_dssp CEEEEEEEEEEC------T--------TTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSS
T ss_pred CcccceEEEEEc------C--------CCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccC
Confidence 469999988764 1 114699999986443 22899999999998754332211 345555332
Q ss_pred ccccCCCceEEEEee
Q 001938 145 SFRNTAQPVLFIKIQ 159 (993)
Q Consensus 145 s~rn~~qP~lyv~Iq 159 (993)
. +....-.|.|+|.
T Consensus 125 ~-~~~~~G~l~l~l~ 138 (176)
T 3m7f_B 125 H-KSRVKGYLRLKMT 138 (176)
T ss_dssp T-TCCCCSEEEEEEE
T ss_pred C-CCccCEEEEEEEE
Confidence 2 2334455555554
No 22
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=71.30 E-value=26 Score=30.70 Aligned_cols=71 Identities=17% Similarity=0.378 Sum_probs=45.5
Q ss_pred EEeecceeeeEEEEeecccCCCCcccccccceEEeecccccc-cccccceeeeccccccccccccccccccccccccccC
Q 001938 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNT 149 (993)
Q Consensus 71 IeFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~rrd-K~QlLGtA~idLADyGii~e~~sis~p~n~Krs~rn~ 149 (993)
=.|||.|.+++. + . ...|.|.+|+-.+- +-.+||.+.|+|.++- +....-.|+.-+ .-+..
T Consensus 58 P~wne~f~f~~~---~-------~----~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~---~~~~~w~~L~~~-~~~~~ 119 (133)
T 2ep6_A 58 PEWNKVFTFPIK---D-------I----HDVLEVTVFDEDGDKPPDFLGKVAIPLLSIR---DGQPNCYVLKNK-DLEQA 119 (133)
T ss_dssp CCCCEEEEEEES---C-------T----TCEEEEEEEEEETTEEEEECCBCEEEGGGCC---SSCCEECCCBCS-CTTSC
T ss_pred CccccEEEEEec---C-------C----CCEEEEEEEECCCCCCCCeeEEEEEEHHHcc---CCCceEEEeecC-CCCCc
Confidence 469999999874 1 0 24699999987553 2389999999999963 222344555422 22334
Q ss_pred CCceEEEEee
Q 001938 150 AQPVLFIKIQ 159 (993)
Q Consensus 150 ~qP~lyv~Iq 159 (993)
.+-.|.|+|+
T Consensus 120 ~~G~i~l~i~ 129 (133)
T 2ep6_A 120 FKGVIYLEMD 129 (133)
T ss_dssp CSSEEEEEEE
T ss_pred cceEEEEEEE
Confidence 5566666664
No 23
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=70.47 E-value=11 Score=32.51 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=53.9
Q ss_pred EEEeeeecCCCCC---ccc-cccceeEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcc
Q 001938 20 QIHIQDIKPWPPS---QSL-RSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDAD 95 (993)
Q Consensus 20 ~IhIqeIKPWPpS---qSL-rSlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~ 95 (993)
.|+|.+-+-.|+. ... .+=.-|.+...+.......|.++--+ -.=.|||.|.+++...
T Consensus 6 ~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~~----------- 67 (126)
T 1rlw_A 6 TVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNND-------INPVWNETFEFILDPN----------- 67 (126)
T ss_dssp EEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTC-------SSCEEEEEEEEEECTT-----------
T ss_pred EEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCC-------CCCcccceEEEEecCC-----------
Confidence 4555555555651 111 12234666665444455666655222 1247999999986221
Q ss_pred cccccceEEeecccccccccccceeeeccccc
Q 001938 96 TFLKNCLEFNLYEPRRDKTQLLATATIDLADY 127 (993)
Q Consensus 96 ~FqKN~LEfnLyE~rrdK~QlLGtA~idLADy 127 (993)
+...|.|.+|+-.+-+-.+||.+.|+|.++
T Consensus 68 --~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l 97 (126)
T 1rlw_A 68 --QENVLEITLMDANYVMDETLGTATFTVSSM 97 (126)
T ss_dssp --SCCEEEEEEEECCSSCCEEEEEEEEEGGGS
T ss_pred --CCCEEEEEEEECCCCCCceeEEEEEEHHHc
Confidence 135799999987544448999999999986
No 24
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.58 E-value=19 Score=31.70 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=50.8
Q ss_pred EEEeeeecCCCCCccccccceeEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcccccc
Q 001938 20 QIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLK 99 (993)
Q Consensus 20 ~IhIqeIKPWPpSqSLrSlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~FqK 99 (993)
.|+|.+-+-.|+...-.+=.-|.+... |. ...|.++- +.-.=.|||.|.+++..... -..
T Consensus 10 ~v~v~~a~~L~~~~~g~~dpyv~v~~~-~~--~~kT~v~~-------~t~nP~wne~f~f~v~~~~~----------~~~ 69 (140)
T 2dmh_A 10 RVIVESASNIPKTKFGKPDPIVSVIFK-DE--KKKTKKVD-------NELNPVWNEILEFDLRGIPL----------DFS 69 (140)
T ss_dssp EEEEEEEESCCCCSSSCCCEEEEEECS-SC--EEECCCCC-------SCSSCEEEEEEEEECSSCCC----------CTT
T ss_pred EEEEEEeeCCCCCCCCCCCeEEEEEEC-CE--eEEeeeec-------CCCCCccCcEEEEEeccccc----------CCC
Confidence 345555554454332112234555554 32 35555542 11235799999887632110 124
Q ss_pred cceEEeecccccc-cccccceeeeccccc
Q 001938 100 NCLEFNLYEPRRD-KTQLLATATIDLADY 127 (993)
Q Consensus 100 N~LEfnLyE~rrd-K~QlLGtA~idLADy 127 (993)
..|.|.+|+-.+- +-.+||.+.|+|.++
T Consensus 70 ~~l~i~V~d~d~~~~~~~lG~~~i~l~~l 98 (140)
T 2dmh_A 70 SSLGIIVKDFETIGQNKLIGTATVALKDL 98 (140)
T ss_dssp CEEEEEEEETTCSSSCCCCEEEEEEGGGT
T ss_pred CEEEEEEEECCCCCCCceEEEEEEEHHHh
Confidence 6799999987543 238999999999986
No 25
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.38 E-value=17 Score=32.08 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=54.3
Q ss_pred EEeeeecCCCCCccccccceeEEEeecCCC--CCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 001938 21 IHIQDIKPWPPSQSLRSLRSVMIQWQNGDR--NSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (993)
Q Consensus 21 IhIqeIKPWPpSqSLrSlrsVllqWENGd~--~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (993)
|+|.+-+--|+.....+=.-|.+..-.+.+ ....|.++--+ -.=.|||.|.+++.. +..+
T Consensus 28 v~v~~a~~L~~~d~~g~dpyv~v~l~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~-----------~~l~ 89 (142)
T 2dmg_A 28 VVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKT-------LNPVFDQSFDFSVSL-----------PEVQ 89 (142)
T ss_dssp EEEEEEECCCCSSTTCCCEEEEEEEESCCCSSSCEECCCCCSC-------SSCEEEEEEEECCCH-----------HHHH
T ss_pred EEEEEeECCCCCCCCCCCeeEEEEEEcCCCCCCcccCCccCCC-------CCCCcCceEEEEecH-----------HHhC
Confidence 445554444443222233456666654433 45556655221 235799999987532 1234
Q ss_pred ccceEEeecccccc-c-c-cccceeeeccccccc
Q 001938 99 KNCLEFNLYEPRRD-K-T-QLLATATIDLADYGI 129 (993)
Q Consensus 99 KN~LEfnLyE~rrd-K-~-QlLGtA~idLADyGi 129 (993)
...|.|.+|+-.+- + - .+||.+.|+|++...
T Consensus 90 ~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~ 123 (142)
T 2dmg_A 90 RRTLDVAVKNSGGFLSKDKGLLGKVLVALASEEL 123 (142)
T ss_dssp HCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTT
T ss_pred cCEEEEEEEECCCccccCCcEEEEEEEecccccc
Confidence 56899999987542 1 1 599999999998754
No 26
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=67.80 E-value=2.8 Score=38.08 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=54.4
Q ss_pred EEEeeeecCCCCCcccc-ccceeEEEeecCCC--CCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccc
Q 001938 20 QIHIQDIKPWPPSQSLR-SLRSVMIQWQNGDR--NSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADT 96 (993)
Q Consensus 20 ~IhIqeIKPWPpSqSLr-SlrsVllqWENGd~--~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~ 96 (993)
.|+|.+-+--|+..... +=.-|.+...++.+ ....|.++--+ -.=.|||.|.+++.. +.
T Consensus 28 ~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~-----------~~ 89 (159)
T 1tjx_A 28 TVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNT-------LNPYYNESFSFEVPF-----------EQ 89 (159)
T ss_dssp EEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSC-------SSCEEEEEEEEECCG-----------GG
T ss_pred EEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCC-------CCCcccceEEEEcCH-----------HH
Confidence 35566666666543221 12245555543322 34555555222 235799999987532 22
Q ss_pred ccccceEEeecccccc-cccccceeeecccccc
Q 001938 97 FLKNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (993)
Q Consensus 97 FqKN~LEfnLyE~rrd-K~QlLGtA~idLADyG 128 (993)
.+...|.|.+|+-.+- +-.+||.+.|+|...|
T Consensus 90 l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~ 122 (159)
T 1tjx_A 90 IQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTG 122 (159)
T ss_dssp GGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH
T ss_pred hCCcEEEEEEEECCCCCCCceEEEEEECCCCCC
Confidence 4566799999987543 2389999999998765
No 27
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=64.51 E-value=17 Score=32.19 Aligned_cols=91 Identities=18% Similarity=0.223 Sum_probs=55.0
Q ss_pred EEEeeeecCCCCCcccc-ccceeEEEeecCC--CCCCCcccccCCCcccccCceEEeecceeee-EEEEeecccCCCCcc
Q 001938 20 QIHIQDIKPWPPSQSLR-SLRSVMIQWQNGD--RNSGSTKTVGPSLGSVIGEGKIEFNESFRLR-VTLLRDMNVKNKDAD 95 (993)
Q Consensus 20 ~IhIqeIKPWPpSqSLr-SlrsVllqWENGd--~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~-vtL~ke~s~kg~~~~ 95 (993)
.|+|.+-+-.|+..... +=.-|.+...++. .....|.++-- .-.-.|||.|.++ +. .+
T Consensus 32 ~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-------t~nP~wne~f~f~~~~-----------~~ 93 (142)
T 2chd_A 32 QCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN-------TRNPVWNETLQYHGIT-----------EE 93 (142)
T ss_dssp EEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCS-------CSSCEEEEEEEEESCC-----------HH
T ss_pred EEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCC-------CCCCcCcCEEEEcccC-----------HH
Confidence 56666666666543221 2234556655432 24455655521 1235799999876 21 12
Q ss_pred cccccceEEeeccccccc-ccccceeeecccccc
Q 001938 96 TFLKNCLEFNLYEPRRDK-TQLLATATIDLADYG 128 (993)
Q Consensus 96 ~FqKN~LEfnLyE~rrdK-~QlLGtA~idLADyG 128 (993)
..+...|.|.+|+-.+-. -.+||.+.|+|.++.
T Consensus 94 ~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~ 127 (142)
T 2chd_A 94 DMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLK 127 (142)
T ss_dssp HHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCC
T ss_pred HccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcC
Confidence 344568999999875432 289999999999863
No 28
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=63.39 E-value=2.7 Score=37.20 Aligned_cols=91 Identities=23% Similarity=0.293 Sum_probs=54.5
Q ss_pred EEEeeeecCCCCCccc-cccceeEEEeecCCC-----------CCCCcccccCCCcccccCceEEeecceeee-EEEEee
Q 001938 20 QIHIQDIKPWPPSQSL-RSLRSVMIQWQNGDR-----------NSGSTKTVGPSLGSVIGEGKIEFNESFRLR-VTLLRD 86 (993)
Q Consensus 20 ~IhIqeIKPWPpSqSL-rSlrsVllqWENGd~-----------~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~-vtL~ke 86 (993)
.|+|.+-+--|+.... .+=.-|.+...++.. ....|.++--+ -.=.|||.|.++ +..
T Consensus 21 ~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~~v~~--- 90 (142)
T 1rh8_A 21 IIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS-------LNPEWNQTVIYKSISM--- 90 (142)
T ss_dssp EEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHH-------HSCEEEEEEEECSCCH---
T ss_pred EEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCC-------CCCCCCCEEEECCcCH---
Confidence 4666666666654322 122346666655432 23555554211 125799999875 322
Q ss_pred cccCCCCcccccccceEEeecccccc-cccccceeeecccccc
Q 001938 87 MNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (993)
Q Consensus 87 ~s~kg~~~~~FqKN~LEfnLyE~rrd-K~QlLGtA~idLADyG 128 (993)
+......|.|.+|+-.+- +-.+||.+.|+|.+..
T Consensus 91 --------~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~ 125 (142)
T 1rh8_A 91 --------EQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTS 125 (142)
T ss_dssp --------HHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCG
T ss_pred --------HHccCCEEEEEEEECCCCCCCceEEEEEEeccccc
Confidence 123456899999987543 2389999999999864
No 29
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=63.30 E-value=61 Score=32.40 Aligned_cols=89 Identities=24% Similarity=0.276 Sum_probs=53.4
Q ss_pred EEEeeeecCCCCCccc-cccceeEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 001938 20 QIHIQDIKPWPPSQSL-RSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (993)
Q Consensus 20 ~IhIqeIKPWPpSqSL-rSlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (993)
.|+|.+-+--|+.... .+=.-|.+....+.+....|.++--+ -.=.|||.|.+++.. +..+
T Consensus 23 ~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~-----------~~l~ 84 (296)
T 1dqv_A 23 VVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKT-------LNPIFNETFQFSVPL-----------AELA 84 (296)
T ss_dssp EEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSC-------SSCEEEEEEEEECCG-----------GGGS
T ss_pred EEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCC-------CCCcEeeEEEEEecH-----------HHhc
Confidence 4666666666654321 12234666664444455566655221 235899999987531 1234
Q ss_pred ccceEEeecccccc-cccccceeeec-ccc
Q 001938 99 KNCLEFNLYEPRRD-KTQLLATATID-LAD 126 (993)
Q Consensus 99 KN~LEfnLyE~rrd-K~QlLGtA~id-LAD 126 (993)
...|.|.+|+-.+- +-.+||.+.|+ |.+
T Consensus 85 ~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~ 114 (296)
T 1dqv_A 85 QRKLHFSVYDFDRFSRHDLIGQVVLDNLLE 114 (296)
T ss_dssp SCCCEEEEEECCSSSCCCEEEEEECCCTTG
T ss_pred CCEEEEEEEEcCCCCCCceEEEEEeccccc
Confidence 46799999987543 23899999996 444
No 30
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=59.62 E-value=4.2 Score=37.90 Aligned_cols=88 Identities=9% Similarity=0.104 Sum_probs=51.6
Q ss_pred EEEeeeecCCCCCcc--ccccceeEEEeecCCC--CCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcc
Q 001938 20 QIHIQDIKPWPPSQS--LRSLRSVMIQWQNGDR--NSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDAD 95 (993)
Q Consensus 20 ~IhIqeIKPWPpSqS--LrSlrsVllqWENGd~--~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~ 95 (993)
.|+|.+-+--|+... =.+=.-|.+...++.+ ....|.++--+ -.=.|||.|.+++..
T Consensus 33 ~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~------------ 93 (171)
T 2q3x_A 33 EVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKT-------LDPLYQQSLVFDESP------------ 93 (171)
T ss_dssp EEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSC-------SSCEEEEEEECSSCC------------
T ss_pred EEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCC-------CCCCCCcEEEEEecC------------
Confidence 355556555554331 1122345555444322 24455555221 235799999988631
Q ss_pred cccccceEEeec-ccccc-cccccceeeecccccc
Q 001938 96 TFLKNCLEFNLY-EPRRD-KTQLLATATIDLADYG 128 (993)
Q Consensus 96 ~FqKN~LEfnLy-E~rrd-K~QlLGtA~idLADyG 128 (993)
+...|.|.+| +-.+- +-.+||.+.|+|+++-
T Consensus 94 --~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~ 126 (171)
T 2q3x_A 94 --QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELD 126 (171)
T ss_dssp --TTEEEEEEEEEECSTTCSSEEEEEEEECGGGSC
T ss_pred --CCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcc
Confidence 2367999999 65442 2289999999999863
No 31
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=58.34 E-value=7.1 Score=34.64 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=41.7
Q ss_pred ceeEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcccccccceEEeecccccc-ccccc
Q 001938 39 RSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLL 117 (993)
Q Consensus 39 rsVllqWENGd~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~rrd-K~QlL 117 (993)
.-|.++- ++...+.|.++--++ .=.|||.|.+++.- . ..|+|.+|+-.+- +-.+|
T Consensus 40 Pyv~v~l--~~~~~~~T~~~~~t~-------nP~WnE~f~f~v~~---~------------~~L~~~V~d~d~~~~dd~i 95 (136)
T 1gmi_A 40 PYIALNV--DDSRIGQTATKQKTN-------SPAWHDEFVTDVCN---G------------RKIELAVFHDAPIGYDDFV 95 (136)
T ss_dssp EEEEEEE--TTEEEEECCCCSSCS-------SCEEEEEEEEEEEE---E------------CEEEEEEEECCSSSSCEEE
T ss_pred cEEEEEE--CCeEeeeeeEECCCc-------CCccCCEEEEEecC---C------------CEEEEEEEeCCCCCCCCEE
Confidence 3555554 333345555542222 23799999998631 0 4799999986432 22799
Q ss_pred ceeeeccccc
Q 001938 118 ATATIDLADY 127 (993)
Q Consensus 118 GtA~idLADy 127 (993)
|.+.|+|.++
T Consensus 96 G~~~i~l~~l 105 (136)
T 1gmi_A 96 ANCTIQFEEL 105 (136)
T ss_dssp EEEEEEHHHH
T ss_pred EEEEEEHHHh
Confidence 9999999875
No 32
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=58.16 E-value=43 Score=29.99 Aligned_cols=89 Identities=18% Similarity=0.268 Sum_probs=52.1
Q ss_pred EEEeeeecCCCCCcccc-ccceeEEEeecCC--CCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccc
Q 001938 20 QIHIQDIKPWPPSQSLR-SLRSVMIQWQNGD--RNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADT 96 (993)
Q Consensus 20 ~IhIqeIKPWPpSqSLr-SlrsVllqWENGd--~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~ 96 (993)
.|+|.+-+--|+..... +=.-|.+...+.. .....|.++--+ -.=.|||.|.+++.- .+
T Consensus 34 ~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~----------~~- 95 (149)
T 1a25_A 34 IVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCS-------LNPEWNETFRFQLKE----------SD- 95 (149)
T ss_dssp EEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSC-------SSCEEEEEEEEECCS----------GG-
T ss_pred EEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCC-------CCCcCCcEEEEEecc----------cc-
Confidence 45555555555443221 2234555554422 344556555221 235799999988631 01
Q ss_pred ccccceEEeecccccc-cccccceeeeccccc
Q 001938 97 FLKNCLEFNLYEPRRD-KTQLLATATIDLADY 127 (993)
Q Consensus 97 FqKN~LEfnLyE~rrd-K~QlLGtA~idLADy 127 (993)
....|.|.+|+-.+- +-.+||.+.|+|+++
T Consensus 96 -~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l 126 (149)
T 1a25_A 96 -KDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 126 (149)
T ss_dssp -GGCEEEEEEEECCSSSCCEEEEEEEEEHHHH
T ss_pred -CCCEEEEEEEECCCCCCCCEEEEEEEEHHHh
Confidence 124699999987543 238999999999986
No 33
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=57.94 E-value=50 Score=29.85 Aligned_cols=88 Identities=18% Similarity=0.167 Sum_probs=49.0
Q ss_pred EEeeeecCCCCCccccccceeEEEee--cCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccccc
Q 001938 21 IHIQDIKPWPPSQSLRSLRSVMIQWQ--NGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFL 98 (993)
Q Consensus 21 IhIqeIKPWPpSqSLrSlrsVllqWE--NGd~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~Fq 98 (993)
|+|.+-+--|+...=.+=.-|.+... .+......|.++--+ -.=.|||.|.+++.. ....
T Consensus 31 V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~v~~-----------~~~~ 92 (153)
T 3fbk_A 31 LHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDC-------RDPAFHEHFFFPVQE-----------EDDQ 92 (153)
T ss_dssp EEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTC-------SSCEEEEEEEEECCG-----------GGTT
T ss_pred EEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCC-------CCCccccEEEEeccc-----------HHhC
Confidence 45555444443321111223444432 223445556555322 224799999887531 1122
Q ss_pred ccceEEeecccccc-c-ccccceeeeccccc
Q 001938 99 KNCLEFNLYEPRRD-K-TQLLATATIDLADY 127 (993)
Q Consensus 99 KN~LEfnLyE~rrd-K-~QlLGtA~idLADy 127 (993)
+ .|.|.+|+-.+- + -.+||.+.|+|.++
T Consensus 93 ~-~L~i~V~d~d~~~~~d~~lG~~~i~l~~l 122 (153)
T 3fbk_A 93 K-RLLVTVWNRASQSRQSGLIGCMSFGVKSL 122 (153)
T ss_dssp S-EEEEEEEECCSSGGGCEEEEEEEEEHHHH
T ss_pred C-EEEEEEEeCCCCCCCCcEEEEEEEEHHHh
Confidence 2 499999987552 2 37999999999984
No 34
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=57.07 E-value=7.4 Score=33.71 Aligned_cols=92 Identities=23% Similarity=0.278 Sum_probs=51.9
Q ss_pred EEEeeeecCCCCCccc-cccceeEEEeecC--CCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCccc
Q 001938 20 QIHIQDIKPWPPSQSL-RSLRSVMIQWQNG--DRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADT 96 (993)
Q Consensus 20 ~IhIqeIKPWPpSqSL-rSlrsVllqWENG--d~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~ 96 (993)
.|+|.+-+--|+.... .+=.-|.+..-.+ ......|.++--+ -.=.|||.|.+++.- .+.
T Consensus 21 ~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t-------~nP~wne~f~f~~~~----------~~~ 83 (129)
T 2bwq_A 21 IVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT-------LEPKWNQTFIYSPVH----------RRE 83 (129)
T ss_dssp EEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSB-------SSCEEEEEEEECSCC----------GGG
T ss_pred EEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCC-------CCCccccEEEEccCC----------HHH
Confidence 4555555555543321 1223455554332 2344555555222 234799999987421 123
Q ss_pred ccccceEEeeccccccc---ccccceeeecccccc
Q 001938 97 FLKNCLEFNLYEPRRDK---TQLLATATIDLADYG 128 (993)
Q Consensus 97 FqKN~LEfnLyE~rrdK---~QlLGtA~idLADyG 128 (993)
.....|.|.+|+-.+-. -.+||.+.|+|++.-
T Consensus 84 ~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~ 118 (129)
T 2bwq_A 84 FRERMLEITLWDQARVREEESEFLGEILIELETAL 118 (129)
T ss_dssp GGGCEEEEEEEEC-------CEEEEEEEEEGGGCC
T ss_pred hcCCeEEEEEEECCcCcCcCCceeEEEEEEccccC
Confidence 45568999999876533 479999999999853
No 35
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=55.74 E-value=6.8 Score=37.31 Aligned_cols=90 Identities=19% Similarity=0.242 Sum_probs=54.0
Q ss_pred cceeEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcccccccceEEeecccccc-cccc
Q 001938 38 LRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQL 116 (993)
Q Consensus 38 lrsVllqWENGd~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~rrd-K~Ql 116 (993)
=.-|.|+-. +...+.|.++--++ .=.+||.|.++|. + ...|+|.+|+-.+- +-.+
T Consensus 61 DPYv~v~l~--~~~~~kT~v~~ktl-------nP~WNE~F~f~v~---~------------~~~L~~~V~D~d~~~~dd~ 116 (157)
T 2fk9_A 61 DPYLTVSVD--QVRVGQTSTKQKTN-------KPTYNEEFCANVT---D------------GGHLELAVFHETPLGYDHF 116 (157)
T ss_dssp CEEEEEEET--TEEEEECCCCSSCS-------SCEEEEEEEEEEE---E------------ECEEEEEEEECCSSSSCEE
T ss_pred CeEEEEEEC--CEeeEEeeecCCCC-------CCccCcEEEEEcC---C------------CCEEEEEEEECCCCCCCCE
Confidence 345666662 33345666543222 1279999999874 1 13699999985332 2279
Q ss_pred cceeeecccccccc---ccccccccccccccccccCCCceEEEEee
Q 001938 117 LATATIDLADYGIV---KETLSVNAPMNSKRSFRNTAQPVLFIKIQ 159 (993)
Q Consensus 117 LGtA~idLADyGii---~e~~sis~p~n~Krs~rn~~qP~lyv~Iq 159 (993)
||.+.|+|.++=-- .+....-+|+. .+-.|+|+|+
T Consensus 117 iG~~~i~l~~l~~~~~~~~~~~~W~~L~--------~~G~i~l~l~ 154 (157)
T 2fk9_A 117 VANCTLQFQELLRTTGASDTFEGWVDLE--------PEGKVFVVIT 154 (157)
T ss_dssp EEEEEEEHHHHHHHHTTCSEEEEEEECB--------SSCEEEEEEE
T ss_pred EEEEEEEHHHhhcccCCCCcccEEEECC--------CCcEEEEEEE
Confidence 99999999885211 02223344442 2677888776
No 36
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=50.80 E-value=4.3 Score=40.69 Aligned_cols=48 Identities=8% Similarity=0.092 Sum_probs=37.0
Q ss_pred EEeecceeeeEEEEeecccCCCCcccccccceEEeecccccccc-cccceeeeccccccc
Q 001938 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKT-QLLATATIDLADYGI 129 (993)
Q Consensus 71 IeFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~rrdK~-QlLGtA~idLADyGi 129 (993)
=.|||.|.+++.. +.++...|+|.+|+-.+... ++||.+.|+|.+.|.
T Consensus 202 P~wne~f~f~v~~-----------~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~ 250 (296)
T 1dqv_A 202 PTYNEALVFDVAP-----------ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP 250 (296)
T ss_dssp CEEEECCCCCCCS-----------GGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH
T ss_pred CeECceEEEEcCH-----------HHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCc
Confidence 5799999887532 23456689999998766433 999999999998865
No 37
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=50.50 E-value=7.7 Score=38.03 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=34.9
Q ss_pred EEeecceeeeEEEEeecccCCCCcccccccceEEeecccccc-cccccceeeecccccc
Q 001938 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYG 128 (993)
Q Consensus 71 IeFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~rrd-K~QlLGtA~idLADyG 128 (993)
=.|||.|.+++.. +.++...|.|.+|+-.+- +-.+||.+.|+|...|
T Consensus 200 P~wne~f~f~v~~-----------~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~ 247 (284)
T 2r83_A 200 PYYNESFSFEVPF-----------EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTG 247 (284)
T ss_dssp CEEEEEEEEECCT-----------TTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCH
T ss_pred CEEceeEEEeCCH-----------HHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCC
Confidence 5799999887522 235567899999987653 2389999999998644
No 38
>1ijd_A Light-harvesting protein B-800/820, alpha chain; pigment-protein complex, alpha-helix apoproteins, intergral protein, photosynthesis; HET: FME RPA BCL; 3.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1
Probab=46.99 E-value=10 Score=32.01 Aligned_cols=30 Identities=37% Similarity=0.431 Sum_probs=24.7
Q ss_pred chhhhccccchHHHHH-HHHHHHHHHHHHHH
Q 001938 947 IRKEVSTRFLLALIVY-LRYFAILVHIAVFH 976 (993)
Q Consensus 947 iRKEVCP~~~lpLIkR-~~~~~~~~~~~~~~ 976 (993)
|=--|=|+.|+||+=- ..-.|++||++|+-
T Consensus 6 iWlVV~PtvGlPl~LgaVav~a~lVH~avl~ 36 (53)
T 1ijd_A 6 IWTVVPPAFGLPLMLGAVAITALLVHAAVLT 36 (53)
T ss_dssp GGGTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCccchHHHHHHHHHHHHHHHHHHHh
Confidence 3345779999999877 77889999999985
No 39
>1nkz_A Light-harvesting protein B-800/850, alpha chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_A* 2fkw_A*
Probab=45.25 E-value=12 Score=31.75 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=24.5
Q ss_pred hhhccccchHHHHH-HHHHHHHHHHHHHHh
Q 001938 949 KEVSTRFLLALIVY-LRYFAILVHIAVFHL 977 (993)
Q Consensus 949 KEVCP~~~lpLIkR-~~~~~~~~~~~~~~~ 977 (993)
--|=|+.|+||+=- ..-.+++||++|+--
T Consensus 8 lVV~PtvglPl~LgaVav~a~lVH~avl~~ 37 (53)
T 1nkz_A 8 TVVNPAIGIPALLGSVTVIAILVHLAILSH 37 (53)
T ss_dssp GTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCccchhHHHHHHHHHHHHHHHHHHhc
Confidence 34779999999877 788999999999853
No 40
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=45.22 E-value=15 Score=33.14 Aligned_cols=44 Identities=11% Similarity=0.192 Sum_probs=32.1
Q ss_pred eEEeecceeeeEEEEeecccCCCCcccccccceEEeecccccccccccceeeeccccc
Q 001938 70 KIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADY 127 (993)
Q Consensus 70 kIeFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~rrdK~QlLGtA~idLADy 127 (993)
.=+|||.|.+.+. + . ...|.|.+|+-.-.+-.+||++.|+|.+.
T Consensus 45 nP~WnE~f~f~v~---~----------~-~~~L~~~V~D~d~~~dd~iG~~~i~l~~l 88 (131)
T 2cjt_A 45 QPSWEQDFMFEIN---R----------L-DLGLTVEVWNKGLIWDTMVGTVWIPLRTI 88 (131)
T ss_dssp SCEEEEEEEEEEC---C----------C-SSEEEEEEEECCSSCEEEEEEEEEEGGGS
T ss_pred CceECCEEEEEEe---C----------C-CCeEEEEEEECCCCCCCeEEEEEEEHHHh
Confidence 3589999999875 1 0 12499999986421228999999999874
No 41
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=44.54 E-value=45 Score=28.95 Aligned_cols=60 Identities=17% Similarity=0.380 Sum_probs=39.1
Q ss_pred CCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcccccccceEEeecccccc-cccccceeeeccccc
Q 001938 49 DRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADY 127 (993)
Q Consensus 49 d~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~rrd-K~QlLGtA~idLADy 127 (993)
......|.++--+ -.=.|||.|.+++.. . + ....|.|.+|+-.+- +-.+||.+.|+|++.
T Consensus 51 ~~~~~kT~~~~~t-------~nP~wne~f~f~~~~--------~--~--~~~~l~i~v~d~d~~~~~~~iG~~~i~l~~l 111 (137)
T 3rdl_A 51 NESKQKTKTIRST-------LNPQWNESFTFKLKP--------S--D--KDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 111 (137)
T ss_dssp CCCCEECCCCCSC-------SSCEEEEEEEEECCG--------G--G--GGCEEEEEEEECCSSSCCEEEEEEEEEHHHH
T ss_pred CCeeecCceEcCC-------CCCCcccEEEEEcCc--------h--h--cCCEEEEEEEECCCCCCCceEEEEEEeHHHh
Confidence 3445566655322 234799999888541 0 1 123699999986443 238999999999987
No 42
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=42.88 E-value=27 Score=31.78 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=28.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001938 563 VAESKIQQLEHKINMLETELREAAAIEASLYSV 595 (993)
Q Consensus 563 ~~~~ki~ele~kie~LE~ELREaAAlEvsLYSV 595 (993)
...+++.+|..||++++.|+|-.+|.=+||=.+
T Consensus 13 ~~~~~~~~l~~~i~~~~~~~~~g~A~a~A~a~l 45 (105)
T 2lme_A 13 KGAHKFRQLDNRLDKLDTRVDKGLASSAALNSL 45 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356999999999999999999999998888554
No 43
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=42.38 E-value=33 Score=32.46 Aligned_cols=84 Identities=19% Similarity=0.231 Sum_probs=49.7
Q ss_pred EEEEeeeecCCC-CCccccccceeEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCcccc
Q 001938 19 YQIHIQDIKPWP-PSQSLRSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTF 97 (993)
Q Consensus 19 Y~IhIqeIKPWP-pSqSLrSlrsVllqWENGd~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~~~F 97 (993)
..|+|.+-+-.| +.-..++=.-|.+.. +| ....|.++-=+ -.=.|||.|.+++. .
T Consensus 38 L~V~V~~A~~L~~~~~~~~sDPYv~v~~-~~--~~~kT~v~~~t-------lnP~Wne~f~f~v~------~-------- 93 (173)
T 2nq3_A 38 LQITVISAKLKENKKNWFGPSPYVEVTV-DG--QSKKTEKCNNT-------NSPKWKQPLTVIVT------P-------- 93 (173)
T ss_dssp EEEEEEEEEECCCC--CCCCCEEEEEEE-TT--EEEECCCCSSC-------SSCEEEEEEEEEEC------T--------
T ss_pred EEEEEEEeECCCCcccCCCCCeEEEEEE-CC--EEeEccccCCC-------CCCeECCEEEEEeC------C--------
Confidence 344555544444 222222333455555 33 45566655211 23579999999761 0
Q ss_pred cccceEEeecccccc-cccccceeeeccccc
Q 001938 98 LKNCLEFNLYEPRRD-KTQLLATATIDLADY 127 (993)
Q Consensus 98 qKN~LEfnLyE~rrd-K~QlLGtA~idLADy 127 (993)
...|.|.+|+-.+- +-.+||.+.|+|.++
T Consensus 94 -~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l 123 (173)
T 2nq3_A 94 -VSKLHFRVWSHQTLKSDVLLGTAALDIYET 123 (173)
T ss_dssp -TCEEEEEEEECCSSSCCEEEEEEEEEHHHH
T ss_pred -CCEEEEEEEECCCCCCCceEEEEEEEHHHh
Confidence 34699999987543 227999999999986
No 44
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=40.33 E-value=16 Score=34.67 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=31.9
Q ss_pred EEeecceeeeEEEEeecccCCCCcccccccceEEeecccccccccccceeeeccccc
Q 001938 71 IEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADY 127 (993)
Q Consensus 71 IeFnEsFrL~vtL~ke~s~kg~~~~~FqKN~LEfnLyE~rrdK~QlLGtA~idLADy 127 (993)
=+|||.|.+.+. + + ...|.|.+|+-.-.+-.+||++.|+|.++
T Consensus 55 P~WnE~f~f~v~---~----------~-~~~L~~~V~D~d~~~dd~iG~~~i~L~~l 97 (167)
T 2cjs_A 55 PSWEQDFMFEIN---R----------L-DLGLTVEVWNKGLIWDTMVGTVWIPLRTI 97 (167)
T ss_dssp CEEEEEEEEECC---C----------T-TSEEEEEEEECCSSCCEEEEEEEEEGGGS
T ss_pred CCCCCEEEEEee---C----------C-CCEEEEEEEECCCCCCceEEEEEEEHHHh
Confidence 589999999876 1 1 12499999986422228999999999984
No 45
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=37.68 E-value=21 Score=34.72 Aligned_cols=122 Identities=16% Similarity=0.230 Sum_probs=67.1
Q ss_pred eEEEEEEEeeeecCCCCCccccccceeEEEeecCCCCCCCcccccCCCcccc-cCceEEeecceeeeEEEEeecccCCCC
Q 001938 15 IHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRNSGSTKTVGPSLGSVI-GEGKIEFNESFRLRVTLLRDMNVKNKD 93 (993)
Q Consensus 15 v~vdY~IhIqeIKPWPpSqSLrSlrsVllqWENGd~~SGsT~~V~PSlgs~v-G~GkIeFnEsFrL~vtL~ke~s~kg~~ 93 (993)
.|+-..++|+..+-=|. ++=+-+=+-. +|.+. .|+.+ - .+-..+|||.|+.|+.= .
T Consensus 19 ~~msL~V~l~~a~~Lpg----~~Dp~akv~F-Rg~k~--kTkvi-------~~~~~npvfnE~F~wpl~~-~-------- 75 (144)
T 3l9b_A 19 SHMALIVHLKTVSELRG----RADRIAKVTF-RGQSF--YSRVL-------ENCEDVADFDETFRWPVAS-S-------- 75 (144)
T ss_dssp CCEEEEEEEEEEESCCS----CEEEEEEEEE-TTEEE--ECCCE-------EEECSCEEEEEEEEEEESS-C--------
T ss_pred CcEEEEEEEEEecCCCC----CCCCeEEEEE-eccce--eeEEe-------ccCCCCceEcceEEecCCC-C--------
Confidence 35666666766666663 1112222222 44332 22222 1 34668999999998751 1
Q ss_pred cccccccceEEeeccccc-ccccccceeeeccccccccccccccccccccccccccCCCceEEEEeeecc
Q 001938 94 ADTFLKNCLEFNLYEPRR-DKTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQPAE 162 (993)
Q Consensus 94 ~~~FqKN~LEfnLyE~rr-dK~QlLGtA~idLADyGii~e~~sis~p~n~Krs~rn~~qP~lyv~IqP~~ 162 (993)
.=.--+|++-||+-.+ -+-.+||+++|-|-+.-.- ....++.|+--.+.-.-.++-.|-|.-||.+
T Consensus 76 --ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~-~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 76 --IDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEE-NRVEVSDTLIDDNNAIIKTSLSMEVRYQAAD 142 (144)
T ss_dssp --CCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHH-SEEEEEEEEECTTSCEEEEEEEEEEEEEETT
T ss_pred --CCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccC-CeEEEeecccCCCCCccccEEEEEEEecCCC
Confidence 1223479999998755 2227899999998765322 2334555554433332223444555556654
No 46
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=25.90 E-value=58 Score=29.29 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=28.6
Q ss_pred ccCccccchhHHHhhHHHHHHHHHHHHHH---HHHHHHHH
Q 001938 553 KVYPRDTRSAVAESKIQQLEHKINMLETE---LREAAAIE 589 (993)
Q Consensus 553 ~~~~~~~~~~~~~~ki~ele~kie~LE~E---LREaAAlE 589 (993)
.-|...+.-.+|..+|.||+.|+..||.| ||..|.-|
T Consensus 9 Lm~AVREEVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspE 48 (78)
T 1dip_A 9 LMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPE 48 (78)
T ss_dssp GGGTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 34555566678999999999999999998 66666544
No 47
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=22.57 E-value=41 Score=27.37 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=17.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH
Q 001938 564 AESKIQQLEHKINMLETELREA 585 (993)
Q Consensus 564 ~~~ki~ele~kie~LE~ELREa 585 (993)
....+++||.+|+.||..|...
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999999888754
No 48
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=22.04 E-value=62 Score=26.67 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.5
Q ss_pred cchhHHHhhHHHHHHHHHHHHHHHH
Q 001938 559 TRSAVAESKIQQLEHKINMLETELR 583 (993)
Q Consensus 559 ~~~~~~~~ki~ele~kie~LE~ELR 583 (993)
.+..+.+..+..|+..|..||+||.
T Consensus 5 ~~aefAERsV~KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 5 SKNYHLENEVARLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999986
No 49
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.67 E-value=81 Score=23.48 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=14.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001938 564 AESKIQQLEHKINMLETELREAAAIE 589 (993)
Q Consensus 564 ~~~ki~ele~kie~LE~ELREaAAlE 589 (993)
+.+|+..|+++|..||-| .||||
T Consensus 5 lkqknarlkqeiaaleye---iaale 27 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYE---IAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHC
T ss_pred HHHhhhHHHHHHHHHHHH---HHHhc
Confidence 556666677777666654 35554
No 50
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=20.68 E-value=3.1e+02 Score=31.33 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=70.6
Q ss_pred eEEEEEEEeeeecCCCCCcc---ccccceeEEEeec--CCCCCCCcccccCCCcccccCc-eEEeecceeeeEEEEeecc
Q 001938 15 IHVDYQIHIQDIKPWPPSQS---LRSLRSVMIQWQN--GDRNSGSTKTVGPSLGSVIGEG-KIEFNESFRLRVTLLRDMN 88 (993)
Q Consensus 15 v~vdY~IhIqeIKPWPpSqS---LrSlrsVllqWEN--Gd~~SGsT~~V~PSlgs~vG~G-kIeFnEsFrL~vtL~ke~s 88 (993)
......|+|.+-+-||+... =.+=.-|.++--. .+.....|++|-= +| .=.|||.|.++|+.
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~-------ng~NP~WnE~f~F~v~~----- 562 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITN-------NGFNPRWDMEFEFEVTV----- 562 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTT-------CSSSCEEEEEEEEEESC-----
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccC-------CCCCCccCceEEEEEec-----
Confidence 44567788888888886542 1111234444322 2445567776622 21 24789999988752
Q ss_pred cCCCCcccccccceEEeecccccc-cccccceeeeccccccccccccccccccccccccccCCCceEEEEee
Q 001938 89 VKNKDADTFLKNCLEFNLYEPRRD-KTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQ 159 (993)
Q Consensus 89 ~kg~~~~~FqKN~LEfnLyE~rrd-K~QlLGtA~idLADyGii~e~~sis~p~n~Krs~rn~~qP~lyv~Iq 159 (993)
.+ -..|.|.+|+-.+- +-.+||.++|.|.+.- ... -.+|+..++.-. ...+.|||+|+
T Consensus 563 -----~e---l~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~--~G~--r~v~L~d~~g~~-~~~~~L~v~i~ 621 (624)
T 1djx_A 563 -----PD---LALVRFMVEDYDSSSKNDFIGQSTIPWNSLK--QGY--RHVHLLSKNGDQ-HPSATLFVKIS 621 (624)
T ss_dssp -----GG---GCEEEEEEEECCSSSCCEEEEEEEEEGGGBC--CEE--EEEEEECTTSCE-EEEEEEEEEEE
T ss_pred -----CC---CCEEEEEEEEcCCCCCCceeEEEEEEHHHcC--CCc--EEEeCCCCCcCC-CCceEEEEEEE
Confidence 01 14799999987432 3389999999998741 111 246775433222 23467888886
No 51
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.56 E-value=1.1e+02 Score=25.33 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=23.7
Q ss_pred cchhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001938 559 TRSAVAESKIQQLEHKINMLETELREAAA 587 (993)
Q Consensus 559 ~~~~~~~~ki~ele~kie~LE~ELREaAA 587 (993)
.+-..|..++.+|+.|++.|.+++.|.-+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999999999999999888643
Done!