BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001939
(993 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
Complexed With Galactose
Length = 419
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 87/413 (21%), Positives = 137/413 (33%), Gaps = 107/413 (25%)
Query: 488 AGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHA 547
A +F +E+ +PGR++++G DY+G V I + K +L+
Sbjct: 39 AEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSE- 97
Query: 548 LARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQ 607
P L ++ FD+D E KK +
Sbjct: 98 ----------NFPKLGVIE-----------FDLD-------------EVEKK-----DGE 118
Query: 608 KWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGXXXXXXXXXXXXXXXXXXHGLN 667
W+ YV G I V++ G + +L+ +P G LN
Sbjct: 119 LWSNYVKGMI-VMLKGAGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLN 177
Query: 668 IHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRF 727
+ +L L QK EN +G G++DQ A GE K + + C L +P +R
Sbjct: 178 VPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNT---LKYEMVPVELRD 234
Query: 728 WGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVEL 787
+ I +I +T P++L S + ++
Sbjct: 235 YDI-------------------------VIMNTNK---PRALTESKYNERFAETREALKR 266
Query: 788 LEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAP 847
++ + L LS F+A ++G+E T+I R
Sbjct: 267 MQTRLDIQSLGELSNEEFDA------NTDLIGDE------------TLIKRAR------- 301
Query: 848 VCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYS----YSACGLGSD 896
H +YEN R K + A LT GELL H S Y GL D
Sbjct: 302 --HAVYENNRTKIAQKAFVAG----NLTKFGELLNASHASLKDDYEVTGLELD 348
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 90/244 (36%), Gaps = 49/244 (20%)
Query: 500 ARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPM 559
++PGR++++G DY+ V P L+ A DK
Sbjct: 6 VKSPGRVNLIGEHTDYTYGYV----------------XPXAIDLYTIITAEKYDK----- 44
Query: 560 PVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILV 619
V SE N TF +D + EG W YV G + V
Sbjct: 45 -----VQLYSEHFNEEKTFTLD--NLTKEGS------------------WIDYVKGVLWV 79
Query: 620 LMTELGVRFEDSISMLVSSAVPEGKGXXXXXXXXXXXXXXXXXXHGLNIHPRDLALLCQK 679
L+ E G + + ++ +P G G + LNI P ALL +K
Sbjct: 80 LIQE-GYKI-GGLKGKITGDLPLGAGLSSSASFEVGILEVLNQLYNLNIDPLKKALLAKK 137
Query: 680 VENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVG 739
EN VG PCG++DQ A G+ + ++ + Q + + P + +G++ +
Sbjct: 138 AENEFVGVPCGILDQFAVVFGKKDNVIFLDTQTLQ-YEYIPFPKDVSVLVFYTGVKRELA 196
Query: 740 GADY 743
++Y
Sbjct: 197 SSEY 200
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 52/145 (35%), Gaps = 9/145 (6%)
Query: 602 DTNPSQKWAAYVAGTILVLMT---ELGVRFEDSISMLVSSAVPEGKGXXXXXXXXXXXXX 658
D W YV G VL E+G I VS +P G G
Sbjct: 60 DLRKENSWIDYVKGIFWVLKESDYEVG-----GIKGRVSGNLPLGAGLSSSASFEVGILE 114
Query: 659 XXXXXHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGV 718
+ L + LL +K EN VG PCG++DQ A G ++ + +
Sbjct: 115 TLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFLDTHTLD-YEY 173
Query: 719 VEIPSHIRFWGIDSGIRHSVGGADY 743
+ P + +G+R + ++Y
Sbjct: 174 IPFPKDVSILVFYTGVRRELASSEY 198
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
Length = 399
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 93/261 (35%), Gaps = 42/261 (16%)
Query: 484 RKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRL 543
R+A F E E+ V+ APGR++++G DY+ LVL +
Sbjct: 24 RRAFREEFGAEPELAVS-APGRVNLIGEHTDYNQGLVLPXALE----------------- 65
Query: 544 WKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDT 603
L V GS + G + S+ DE + + +
Sbjct: 66 ------------------LXTVLVGSPRKD-GLVSLLTTSEGADEPQRLQFPLPTAQRSL 106
Query: 604 NP-SQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGXXXXXXXXXXXXXXXXX 662
P + +WA YV G I F S +V S+VP G G
Sbjct: 107 EPGTPRWANYVKGVIQYYPAAPLPGF----SAVVVSSVPLGGGLSSSASLEVATYTFLQQ 162
Query: 663 XHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP 722
+ A +CQ+ E+ G PCG+ DQ S G+ L + C+ E V
Sbjct: 163 LCPDSGTIAARAQVCQQAEHSFAGXPCGIXDQFISLXGQKGHALLIDCRSLETSLVPLSD 222
Query: 723 SHIRFWGIDSGIRHSVGGADY 743
+ +S +RHS+ ++Y
Sbjct: 223 PKLAVLITNSNVRHSLASSEY 243
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 86/250 (34%), Gaps = 42/250 (16%)
Query: 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQG 557
F RAPGR++++G DY G VL M + + +A++ +
Sbjct: 56 FYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVK-------------------- 95
Query: 558 PMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTI 617
+Y +L+N P + DF + +K K W Y +
Sbjct: 96 --------TYALQLANTNPLY----PDFSTSANNIQIDKTKPL--------WHNYFLCGL 135
Query: 618 LVLMTELGVRFEDSISMLVSSAVPEGKGXXXXXXXXXXXXXXXXXXHGLNIHPRDLALLC 677
+ G+ ++ LV +P G G N+ +LA +C
Sbjct: 136 KGIQEHFGLSNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEIC 195
Query: 678 QKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHS 737
K E +I G G MDQ S E + P V++PS F +S + +
Sbjct: 196 AKSERYI-GTEGGGMDQSISFLAEEGTAKLIEFSPLRATD-VKLPSGAVFVIANSCVEMN 253
Query: 738 VGGADYGSVR 747
+ ++R
Sbjct: 254 KAATSHFNIR 263
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 84/227 (37%), Gaps = 48/227 (21%)
Query: 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQG 557
FVAR+PGR++++G DY VL + I A++ + N+K
Sbjct: 66 FVARSPGRVNLIGEHIDYCDFSVLPLAIDFDMLCAVKVL---------------NEKN-- 108
Query: 558 PMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPS-QKWAAYVAGT 616
P + +++ + + R FD+ L Y +PS W+ Y
Sbjct: 109 --PSITLINADPKFAQR--KFDLPLDG--------------SYVTIDPSVSDWSNYFKCG 150
Query: 617 ILVLMTELGV----RFEDS----ISMLVSSAVPEGKGXXXXXXXXXXXXXXXXXXH---G 665
+ V + L RF + + + VP G G + G
Sbjct: 151 LHVAHSFLKKLAPERFASAPLAGLQVFCEGDVPTGSGLSSSAAFICAVALAVVKANMGPG 210
Query: 666 LNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQP 712
++ ++L + V H VG G MDQ AS CGE + L + +P
Sbjct: 211 YHMSKQNL-MRITVVAEHYVGVNNGGMDQAASVCGEEDHALYVEFKP 256
>pdb|1TDI|A Chain A, Crystal Structure Of Hgsta3-3 In Complex With Glutathione
pdb|1TDI|B Chain B, Crystal Structure Of Hgsta3-3 In Complex With Glutathione
pdb|2VCV|A Chain A, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|B Chain B, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|C Chain C, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|D Chain D, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|E Chain E, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|F Chain F, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|G Chain G, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|H Chain H, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|I Chain I, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|J Chain J, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|K Chain K, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|L Chain L, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|M Chain M, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|N Chain N, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|O Chain O, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
pdb|2VCV|P Chain P, Glutathione Transferase A3-3 In Complex With Glutathione
And Delta-4-Androstene-3-17-Dione
Length = 222
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 781 EVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKR 840
E+DG++L++ A L+Y+ + LY K+I E + + +++ D N+ + ++
Sbjct: 59 EIDGMKLVQTRAILNYIASKY-----NLYGKDIKERALIDMYTEGMADLNEMILLL---- 109
Query: 841 TYFVRAPVCHPIYENFRVKAFK 862
P+C P ++ ++ K
Sbjct: 110 ------PLCRPEEKDAKIALIK 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,451,971
Number of Sequences: 62578
Number of extensions: 1243838
Number of successful extensions: 2620
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2609
Number of HSP's gapped (non-prelim): 19
length of query: 993
length of database: 14,973,337
effective HSP length: 108
effective length of query: 885
effective length of database: 8,214,913
effective search space: 7270198005
effective search space used: 7270198005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)