Query 001939
Match_columns 993
No_of_seqs 507 out of 3368
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 12:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0153 GalK Galactokinase [Ca 100.0 9.7E-76 2.1E-80 635.9 31.5 380 481-977 7-389 (390)
2 PTZ00290 galactokinase; Provis 100.0 1.5E-67 3.3E-72 604.0 35.7 389 481-978 16-457 (468)
3 PLN02865 galactokinase 100.0 3.6E-67 7.7E-72 596.0 36.3 390 482-976 14-422 (423)
4 PLN02521 galactokinase 100.0 4.6E-64 1E-68 583.2 33.7 420 483-979 35-496 (497)
5 PRK05322 galactokinase; Provis 100.0 1.4E-62 3.1E-67 561.4 36.2 378 483-976 6-386 (387)
6 PRK05101 galactokinase; Provis 100.0 2.1E-61 4.5E-66 551.5 34.3 373 482-976 6-381 (382)
7 TIGR00131 gal_kin galactokinas 100.0 6.7E-60 1.5E-64 542.3 35.4 376 484-976 5-385 (386)
8 PRK00555 galactokinase; Provis 100.0 4.9E-60 1.1E-64 536.1 33.6 355 498-977 3-362 (363)
9 PRK03817 galactokinase; Provis 100.0 4.7E-51 1E-55 463.9 32.1 347 499-977 2-350 (351)
10 KOG0631 Galactokinase [Carbohy 100.0 6E-48 1.3E-52 424.7 23.2 405 486-960 29-462 (489)
11 PLN02677 mevalonate kinase 100.0 6.2E-42 1.3E-46 386.6 27.4 336 498-976 3-381 (387)
12 TIGR00549 mevalon_kin mevalona 100.0 6.8E-41 1.5E-45 368.7 24.7 273 502-938 1-273 (273)
13 COG1577 ERG12 Mevalonate kinas 100.0 1.2E-39 2.6E-44 353.7 25.1 292 499-957 2-293 (307)
14 TIGR01220 Pmev_kin_Gr_pos phos 100.0 5.8E-39 1.2E-43 363.8 30.4 315 499-968 2-353 (358)
15 KOG1511 Mevalonate kinase MVK/ 100.0 1.5E-39 3.2E-44 342.8 21.4 338 498-976 5-379 (397)
16 PRK13412 fkp bifunctional fuco 100.0 2E-38 4.3E-43 385.0 24.8 306 496-952 608-948 (974)
17 PTZ00298 mevalonate kinase; Pr 100.0 5.7E-36 1.2E-40 336.5 25.5 299 499-959 12-313 (328)
18 PRK03926 mevalonate kinase; Pr 100.0 8.4E-35 1.8E-39 324.8 28.8 295 498-976 2-298 (302)
19 PF13528 Glyco_trans_1_3: Glyc 100.0 2.3E-31 5E-36 299.5 27.7 311 16-346 1-317 (318)
20 COG2605 Predicted kinase relat 100.0 1.2E-31 2.6E-36 277.3 22.8 312 498-977 2-330 (333)
21 PHA03392 egt ecdysteroid UDP-g 100.0 1.2E-26 2.6E-31 274.5 33.3 372 16-416 21-489 (507)
22 PRK12446 undecaprenyldiphospho 99.9 1.1E-25 2.3E-30 256.0 31.9 326 13-369 1-351 (352)
23 cd03784 GT1_Gtf_like This fami 99.9 3.8E-25 8.3E-30 257.3 26.0 344 16-369 1-400 (401)
24 TIGR00661 MJ1255 conserved hyp 99.9 1.3E-24 2.8E-29 245.0 28.1 307 17-350 1-315 (321)
25 PF00201 UDPGT: UDP-glucoronos 99.9 1.6E-27 3.4E-32 285.3 1.0 197 194-416 246-465 (500)
26 COG0707 MurG UDP-N-acetylgluco 99.9 1.4E-23 3.1E-28 236.0 29.5 318 22-371 6-355 (357)
27 PRK00128 ipk 4-diphosphocytidy 99.9 7.6E-24 1.6E-28 234.6 21.9 262 498-953 3-270 (286)
28 COG1819 Glycosyl transferases, 99.9 2.7E-23 5.8E-28 239.6 21.5 340 15-373 1-401 (406)
29 TIGR01426 MGT glycosyltransfer 99.9 1.9E-22 4.1E-27 234.0 27.9 335 24-371 3-390 (392)
30 PRK02534 4-diphosphocytidyl-2- 99.9 1.5E-22 3.3E-27 226.6 24.6 295 498-974 4-308 (312)
31 TIGR00154 ispE 4-diphosphocyti 99.9 1.5E-21 3.2E-26 215.9 22.5 171 499-739 3-180 (293)
32 PLN02451 homoserine kinase 99.9 1.8E-21 4E-26 220.6 22.8 243 610-976 114-364 (370)
33 PLN02208 glycosyltransferase f 99.9 3.1E-20 6.8E-25 215.8 32.3 338 22-370 10-419 (442)
34 COG0083 ThrB Homoserine kinase 99.9 1.3E-20 2.8E-25 203.0 24.4 237 610-978 58-298 (299)
35 TIGR01219 Pmev_kin_ERG8 phosph 99.9 4.1E-20 8.8E-25 211.7 29.3 358 500-975 2-447 (454)
36 COG4671 Predicted glycosyl tra 99.9 5.2E-20 1.1E-24 196.6 27.2 333 15-372 9-390 (400)
37 PLN03007 UDP-glucosyltransfera 99.8 5.1E-19 1.1E-23 209.2 28.3 323 22-350 11-441 (482)
38 PLN02210 UDP-glucosyl transfer 99.8 1.9E-18 4.2E-23 202.1 32.8 329 22-371 14-432 (456)
39 PLN00414 glycosyltransferase f 99.8 1.9E-18 4.2E-23 201.1 30.3 342 22-371 10-421 (446)
40 TIGR01920 Shik_kin_archae shik 99.8 6.8E-19 1.5E-23 191.4 24.8 118 611-734 46-164 (261)
41 PLN02670 transferase, transfer 99.8 3.6E-18 7.7E-23 199.3 31.1 344 22-373 12-465 (472)
42 PRK01123 shikimate kinase; Pro 99.8 1.5E-18 3.2E-23 191.4 26.5 122 610-738 56-178 (282)
43 PRK00726 murG undecaprenyldiph 99.8 3.6E-18 7.7E-23 195.6 29.0 324 16-371 2-355 (357)
44 PLN02448 UDP-glycosyltransfera 99.8 7.7E-18 1.7E-22 198.2 31.6 339 15-371 10-434 (459)
45 TIGR00191 thrB homoserine kina 99.8 6E-19 1.3E-23 196.6 21.0 234 610-975 60-300 (302)
46 PLN02173 UDP-glucosyl transfer 99.8 2.3E-17 5.1E-22 191.6 33.3 332 22-371 11-425 (449)
47 PTZ00299 homoserine kinase; Pr 99.8 1.7E-18 3.6E-23 193.1 22.7 248 610-983 61-328 (336)
48 PRK01212 homoserine kinase; Pr 99.8 1.4E-18 3.1E-23 194.0 21.7 233 610-975 62-299 (301)
49 PLN02764 glycosyltransferase f 99.8 1.8E-17 3.8E-22 192.1 31.4 328 16-350 6-408 (453)
50 PLN02410 UDP-glucoronosyl/UDP- 99.8 2.8E-17 6.2E-22 191.7 31.8 332 22-371 13-427 (451)
51 cd03785 GT1_MurG MurG is an N- 99.8 1.4E-17 3E-22 189.9 28.4 301 18-350 2-325 (350)
52 PLN02992 coniferyl-alcohol glu 99.8 2.6E-17 5.6E-22 192.3 30.2 330 22-371 11-444 (481)
53 PLN02605 monogalactosyldiacylg 99.8 4E-18 8.7E-23 197.0 22.6 240 109-370 91-378 (382)
54 PLN02562 UDP-glycosyltransfera 99.8 2.4E-17 5.3E-22 192.7 27.5 311 22-350 12-414 (448)
55 PLN02554 UDP-glycosyltransfera 99.8 7.3E-17 1.6E-21 190.7 29.6 150 194-348 238-439 (481)
56 PLN03004 UDP-glycosyltransfera 99.8 1.5E-16 3.3E-21 185.0 31.5 163 195-370 236-437 (451)
57 PRK13608 diacylglycerol glucos 99.8 7.1E-18 1.5E-22 195.4 20.3 242 108-371 94-369 (391)
58 PLN02555 limonoid glucosyltran 99.8 2.5E-16 5.4E-21 184.6 32.3 318 22-350 13-430 (480)
59 PLN02863 UDP-glucoronosyl/UDP- 99.8 2.2E-16 4.8E-21 185.5 31.2 316 22-348 15-432 (477)
60 PLN02207 UDP-glycosyltransfera 99.8 2.1E-16 4.6E-21 184.4 29.7 324 13-348 1-425 (468)
61 PRK13609 diacylglycerol glucos 99.8 2.8E-17 6E-22 190.0 22.1 325 16-371 5-369 (380)
62 PRK03188 4-diphosphocytidyl-2- 99.8 5.2E-17 1.1E-21 181.1 22.6 278 500-969 3-285 (300)
63 PLN02167 UDP-glycosyltransfera 99.8 4.3E-16 9.4E-21 183.9 30.4 152 194-350 243-435 (475)
64 PLN00164 glucosyltransferase; 99.7 4.1E-16 9E-21 183.7 29.6 338 13-371 1-450 (480)
65 TIGR01133 murG undecaprenyldip 99.7 7E-16 1.5E-20 175.7 29.2 302 17-351 2-323 (348)
66 PLN02152 indole-3-acetate beta 99.7 6.5E-16 1.4E-20 179.9 28.8 325 14-350 2-418 (455)
67 TIGR03590 PseG pseudaminic aci 99.7 2.1E-16 4.6E-21 174.2 22.0 249 23-320 10-279 (279)
68 PRK14616 4-diphosphocytidyl-2- 99.7 4.8E-16 1E-20 172.0 22.1 266 498-957 4-275 (287)
69 PRK14611 4-diphosphocytidyl-2- 99.7 6.2E-16 1.3E-20 170.0 21.4 167 499-739 3-174 (275)
70 PLN02534 UDP-glycosyltransfera 99.7 6.7E-15 1.4E-19 172.8 31.3 318 22-348 14-443 (491)
71 PLN03015 UDP-glucosyl transfer 99.7 6.1E-15 1.3E-19 171.6 30.2 149 195-348 237-425 (470)
72 KOG1192 UDP-glucuronosyl and U 99.7 2.5E-15 5.3E-20 180.0 27.8 182 193-388 244-463 (496)
73 PRK14614 4-diphosphocytidyl-2- 99.7 4.8E-16 1E-20 171.2 19.6 114 610-739 66-179 (280)
74 PRK14608 4-diphosphocytidyl-2- 99.7 4.7E-15 1E-19 163.9 22.6 117 608-739 68-184 (290)
75 TIGR00215 lpxB lipid-A-disacch 99.7 3.2E-15 7E-20 172.5 21.6 292 22-350 11-348 (385)
76 PRK14612 4-diphosphocytidyl-2- 99.7 2.3E-15 5E-20 165.6 19.1 164 499-738 4-172 (276)
77 TIGR00144 beta_RFAP_syn beta-R 99.7 1.8E-14 4E-19 161.3 26.0 231 610-976 64-323 (324)
78 PRK14609 4-diphosphocytidyl-2- 99.6 6E-15 1.3E-19 161.1 18.8 116 607-739 61-177 (269)
79 PRK14615 4-diphosphocytidyl-2- 99.6 3.5E-14 7.5E-19 157.4 22.4 171 497-739 6-183 (296)
80 PRK00343 ipk 4-diphosphocytidy 99.6 3E-14 6.6E-19 155.7 20.0 168 498-739 7-180 (271)
81 PF10509 GalKase_gal_bdg: Gala 99.6 3.6E-16 7.8E-21 124.3 2.5 51 485-536 2-52 (52)
82 COG3980 spsG Spore coat polysa 99.6 1.2E-13 2.6E-18 144.3 19.1 262 24-350 12-294 (318)
83 PRK00025 lpxB lipid-A-disaccha 99.5 7.9E-13 1.7E-17 152.8 23.0 319 16-372 2-376 (380)
84 PF04101 Glyco_tran_28_C: Glyc 99.5 1.7E-14 3.6E-19 146.9 4.0 127 225-351 1-146 (167)
85 PRK14613 4-diphosphocytidyl-2- 99.5 1.8E-12 4E-17 143.7 18.9 213 610-957 74-288 (297)
86 PF00288 GHMP_kinases_N: GHMP 99.4 1.7E-13 3.8E-18 117.0 7.5 67 633-701 1-67 (67)
87 TIGR03492 conserved hypothetic 99.4 4.1E-11 9E-16 138.7 22.9 317 26-370 6-395 (396)
88 PLN02871 UDP-sulfoquinovose:DA 99.3 1.1E-09 2.4E-14 130.2 28.8 307 13-351 56-402 (465)
89 PRK14610 4-diphosphocytidyl-2- 99.3 2.8E-10 6E-15 125.6 21.7 111 610-738 65-177 (283)
90 PRK00650 4-diphosphocytidyl-2- 99.3 1.7E-10 3.6E-15 125.9 19.3 110 610-735 61-170 (288)
91 KOG0631 Galactokinase [Carbohy 99.2 7.6E-14 1.7E-18 155.6 -12.1 407 134-620 77-485 (489)
92 cd04962 GT1_like_5 This family 99.2 2.9E-09 6.3E-14 122.1 24.4 131 211-350 185-337 (371)
93 cd03814 GT1_like_2 This family 99.2 7.4E-09 1.6E-13 117.4 26.2 289 27-350 14-333 (364)
94 COG1685 Archaeal shikimate kin 99.2 4.6E-09 1E-13 109.7 22.0 165 499-734 4-170 (278)
95 TIGR01240 mevDPdecarb diphosph 99.1 7.5E-09 1.6E-13 114.7 22.7 81 610-702 66-146 (305)
96 cd03816 GT1_ALG1_like This fam 99.1 1.8E-08 3.9E-13 118.0 26.3 119 221-349 229-381 (415)
97 PF08544 GHMP_kinases_C: GHMP 99.1 1.4E-10 3.1E-15 103.9 6.4 82 861-957 1-84 (85)
98 cd03825 GT1_wcfI_like This fam 99.1 1.2E-08 2.7E-13 116.2 23.9 134 209-350 177-331 (365)
99 cd03823 GT1_ExpE7_like This fa 99.1 1.1E-08 2.4E-13 115.6 22.7 122 222-351 189-331 (359)
100 cd03817 GT1_UGDG_like This fam 99.1 3.2E-08 6.9E-13 112.2 26.2 296 24-351 11-345 (374)
101 cd04951 GT1_WbdM_like This fam 99.1 3.4E-08 7.3E-13 112.4 26.1 129 211-350 176-327 (360)
102 cd03820 GT1_amsD_like This fam 99.1 3.3E-08 7.1E-13 110.6 25.3 120 223-350 177-320 (348)
103 TIGR03088 stp2 sugar transfera 99.0 4.2E-08 9.1E-13 113.0 25.9 295 15-350 1-339 (374)
104 cd03808 GT1_cap1E_like This fa 99.0 6.5E-08 1.4E-12 108.6 26.8 121 222-350 186-330 (359)
105 cd03794 GT1_wbuB_like This fam 99.0 5.6E-08 1.2E-12 110.5 26.3 121 222-350 218-366 (394)
106 COG1947 IspE 4-diphosphocytidy 99.0 1.8E-08 3.9E-13 108.8 19.8 112 611-738 67-178 (289)
107 cd03812 GT1_CapH_like This fam 99.0 5.3E-08 1.2E-12 110.8 25.1 129 214-352 183-334 (358)
108 PRK15179 Vi polysaccharide bio 99.0 7.5E-08 1.6E-12 117.8 27.1 122 223-350 516-660 (694)
109 cd03807 GT1_WbnK_like This fam 99.0 9.1E-08 2E-12 107.9 25.5 129 211-350 181-333 (365)
110 cd03819 GT1_WavL_like This fam 99.0 1.3E-07 2.7E-12 107.6 26.0 278 27-348 10-329 (355)
111 PRK10307 putative glycosyl tra 99.0 4E-07 8.7E-12 106.5 30.6 131 211-350 217-374 (412)
112 KOG4644 L-fucose kinase [Carbo 99.0 1.3E-07 2.8E-12 104.9 23.7 105 630-735 690-805 (948)
113 KOG1537 Homoserine kinase [Ami 98.9 1E-08 2.3E-13 105.4 13.8 249 630-976 93-352 (355)
114 TIGR00236 wecB UDP-N-acetylglu 98.9 2.2E-07 4.8E-12 106.9 26.2 238 107-370 75-364 (365)
115 cd03811 GT1_WabH_like This fam 98.9 4.4E-07 9.5E-12 101.5 27.5 117 222-346 187-326 (353)
116 cd03801 GT1_YqgM_like This fam 98.9 2.7E-07 5.8E-12 103.6 25.3 293 26-350 13-342 (374)
117 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 3.1E-07 6.7E-12 105.4 25.8 143 214-367 190-362 (363)
118 PF04007 DUF354: Protein of un 98.9 6E-07 1.3E-11 100.7 26.7 307 16-370 1-333 (335)
119 TIGR03449 mycothiol_MshA UDP-N 98.9 4.6E-07 1E-11 105.6 27.0 300 27-350 20-369 (405)
120 cd03805 GT1_ALG2_like This fam 98.9 8.9E-07 1.9E-11 102.5 28.1 120 222-350 209-365 (392)
121 cd03796 GT1_PIG-A_like This fa 98.8 4.3E-07 9.3E-12 105.8 24.9 119 222-350 191-334 (398)
122 cd03821 GT1_Bme6_like This fam 98.8 8E-07 1.7E-11 100.6 26.5 126 214-350 194-346 (375)
123 cd03800 GT1_Sucrose_synthase T 98.8 3.1E-07 6.7E-12 106.2 22.9 128 214-350 211-369 (398)
124 PRK05749 3-deoxy-D-manno-octul 98.8 4.9E-07 1.1E-11 106.3 24.5 130 212-350 224-389 (425)
125 cd03799 GT1_amsK_like This is 98.8 1.2E-06 2.5E-11 99.5 26.2 121 222-350 177-328 (355)
126 COG1907 Predicted archaeal sug 98.8 1.1E-06 2.4E-11 93.0 21.9 224 630-976 70-310 (312)
127 cd03798 GT1_wlbH_like This fam 98.7 1.9E-06 4.1E-11 97.2 25.2 122 222-351 200-346 (377)
128 cd03802 GT1_AviGT4_like This f 98.7 1E-06 2.2E-11 99.3 22.9 114 226-349 173-308 (335)
129 cd03792 GT1_Trehalose_phosphor 98.7 1E-06 2.3E-11 101.5 23.0 128 212-350 179-338 (372)
130 PRK09922 UDP-D-galactose:(gluc 98.7 4.8E-07 1E-11 103.9 20.1 121 224-352 180-327 (359)
131 cd03818 GT1_ExpC_like This fam 98.7 2.9E-06 6.3E-11 98.8 26.5 82 261-350 280-367 (396)
132 COG4542 PduX Protein involved 98.7 1.5E-06 3.3E-11 89.9 20.1 109 621-745 71-181 (293)
133 cd03795 GT1_like_4 This family 98.7 4.2E-06 9E-11 95.0 25.3 119 223-350 190-333 (357)
134 cd03822 GT1_ecORF704_like This 98.7 3.1E-06 6.7E-11 96.1 23.4 119 223-350 184-335 (366)
135 cd05844 GT1_like_7 Glycosyltra 98.6 2.6E-06 5.6E-11 97.5 22.7 119 224-350 188-337 (367)
136 TIGR02472 sucr_P_syn_N sucrose 98.6 9.4E-06 2E-10 95.9 27.8 83 260-350 315-407 (439)
137 PRK15490 Vi polysaccharide bio 98.6 5.9E-06 1.3E-10 97.3 25.1 230 93-343 255-532 (578)
138 PLN02275 transferase, transfer 98.6 6.4E-06 1.4E-10 95.1 25.5 92 246-347 260-371 (371)
139 PRK00654 glgA glycogen synthas 98.6 5.3E-06 1.1E-10 98.8 24.1 138 210-349 268-428 (466)
140 PRK14089 ipid-A-disaccharide s 98.6 3.2E-07 6.9E-12 103.7 12.2 143 222-369 166-346 (347)
141 PRK04181 4-diphosphocytidyl-2- 98.6 1.1E-06 2.5E-11 95.2 15.6 115 610-739 61-180 (257)
142 PRK15427 colanic acid biosynth 98.6 7.3E-06 1.6E-10 95.8 23.2 120 223-350 221-372 (406)
143 TIGR02095 glgA glycogen/starch 98.5 1.2E-05 2.6E-10 96.0 24.3 131 210-348 276-436 (473)
144 PRK10125 putative glycosyl tra 98.5 9.2E-06 2E-10 94.8 22.2 96 238-342 260-364 (405)
145 PLN02407 diphosphomevalonate d 98.5 9.1E-06 2E-10 90.0 20.5 60 633-702 105-167 (343)
146 PRK15484 lipopolysaccharide 1, 98.5 2.3E-05 5.1E-10 90.7 24.5 132 210-350 180-345 (380)
147 COG3890 ERG8 Phosphomevalonate 98.5 1.4E-05 3.1E-10 83.6 19.6 92 643-739 107-207 (337)
148 PRK14099 glycogen synthase; Pr 98.4 3.5E-05 7.6E-10 91.9 25.1 134 211-346 281-441 (485)
149 TIGR02149 glgA_Coryne glycogen 98.4 2.6E-05 5.5E-10 90.2 23.5 135 209-350 187-353 (388)
150 PLN02846 digalactosyldiacylgly 98.4 2.7E-05 5.9E-10 91.2 23.3 113 226-350 230-364 (462)
151 TIGR02470 sucr_synth sucrose s 98.4 0.00028 6.1E-09 87.0 31.1 125 214-347 539-707 (784)
152 cd01635 Glycosyltransferase_GT 98.4 1E-05 2.2E-10 85.0 16.1 53 261-313 160-219 (229)
153 TIGR02468 sucrsPsyn_pln sucros 98.3 9.2E-05 2E-09 93.1 26.5 83 260-350 546-638 (1050)
154 PF02684 LpxB: Lipid-A-disacch 98.3 3.2E-05 6.9E-10 88.1 20.7 295 20-350 2-341 (373)
155 cd03809 GT1_mtfB_like This fam 98.3 2.1E-05 4.5E-10 89.2 19.5 117 224-350 195-337 (365)
156 cd04955 GT1_like_6 This family 98.3 0.00012 2.6E-09 83.3 25.8 125 212-350 183-331 (363)
157 KOG3349 Predicted glycosyltran 98.3 4.3E-06 9.3E-11 80.1 11.1 111 224-334 4-137 (170)
158 PRK05905 hypothetical protein; 98.3 1E-05 2.2E-10 87.4 15.1 112 610-739 66-179 (258)
159 COG0763 LpxB Lipid A disacchar 98.3 3.8E-05 8.3E-10 85.6 19.4 317 16-371 2-379 (381)
160 PRK01021 lpxB lipid-A-disaccha 98.3 0.00014 3E-09 86.5 24.6 227 105-350 297-572 (608)
161 PLN02316 synthase/transferase 98.3 0.00077 1.7E-08 85.3 31.9 138 210-349 826-998 (1036)
162 TIGR03087 stp1 sugar transfera 98.3 8E-05 1.7E-09 86.8 22.2 95 246-350 258-363 (397)
163 cd03791 GT1_Glycogen_synthase_ 98.2 0.0001 2.2E-09 88.1 22.8 137 211-350 282-443 (476)
164 cd03804 GT1_wbaZ_like This fam 98.2 7.2E-05 1.6E-09 85.4 20.3 117 226-350 197-327 (351)
165 PLN02939 transferase, transfer 98.2 0.0012 2.5E-08 82.3 30.8 137 210-348 763-930 (977)
166 cd03806 GT1_ALG11_like This fa 98.2 0.00065 1.4E-08 79.8 27.2 118 224-350 237-393 (419)
167 PLN02501 digalactosyldiacylgly 98.1 7.3E-05 1.6E-09 89.4 17.7 221 108-351 424-683 (794)
168 COG3407 MVD1 Mevalonate pyroph 98.1 0.00036 7.8E-09 76.9 20.8 81 610-702 71-151 (329)
169 PLN00142 sucrose synthase 98.0 0.0015 3.2E-08 80.8 27.0 125 214-347 562-730 (815)
170 cd04950 GT1_like_1 Glycosyltra 98.0 0.00051 1.1E-08 79.4 21.1 114 225-350 206-341 (373)
171 PF02350 Epimerase_2: UDP-N-ac 98.0 4.8E-05 1E-09 86.7 12.3 135 221-367 178-345 (346)
172 TIGR03568 NeuC_NnaA UDP-N-acet 98.0 0.00083 1.8E-08 77.3 22.3 219 106-348 81-338 (365)
173 KOG2833 Mevalonate pyrophospha 97.9 0.00046 1E-08 73.7 16.4 62 631-702 105-166 (395)
174 cd03813 GT1_like_3 This family 97.9 0.00049 1.1E-08 82.3 18.7 119 223-350 292-443 (475)
175 PF00534 Glycos_transf_1: Glyc 97.8 3.2E-05 6.8E-10 78.6 6.5 132 210-350 2-159 (172)
176 COG1817 Uncharacterized protei 97.7 0.0097 2.1E-07 64.5 23.7 311 17-371 2-340 (346)
177 cd04949 GT1_gtfA_like This fam 97.7 0.00067 1.5E-08 78.0 15.8 120 224-350 204-346 (372)
178 PF03033 Glyco_transf_28: Glyc 97.7 6.7E-05 1.5E-09 73.5 6.4 33 22-54 4-36 (139)
179 COG0381 WecB UDP-N-acetylgluco 97.7 0.005 1.1E-07 69.3 21.6 101 262-372 262-373 (383)
180 KOG4519 Phosphomevalonate kina 97.6 0.0099 2.1E-07 64.1 21.8 60 643-702 152-224 (459)
181 PLN02949 transferase, transfer 97.5 0.015 3.2E-07 69.1 23.5 95 246-350 302-423 (463)
182 COG1829 Predicted archaeal kin 97.4 0.005 1.1E-07 65.6 15.6 99 620-731 66-168 (283)
183 TIGR02918 accessory Sec system 97.3 0.0078 1.7E-07 72.1 18.9 120 223-348 318-466 (500)
184 COG1519 KdtA 3-deoxy-D-manno-o 96.8 0.43 9.4E-06 54.5 24.9 82 263-350 301-387 (419)
185 PF13692 Glyco_trans_1_4: Glyc 96.8 0.0023 5E-08 62.1 5.8 94 246-349 33-135 (135)
186 COG5017 Uncharacterized conser 96.6 0.017 3.6E-07 55.0 10.2 107 226-333 2-125 (161)
187 PHA01633 putative glycosyl tra 96.6 0.0074 1.6E-07 68.2 9.4 138 211-350 135-308 (335)
188 PRK14098 glycogen synthase; Pr 96.5 0.016 3.5E-07 69.4 12.0 135 210-348 292-450 (489)
189 cd04946 GT1_AmsK_like This fam 96.5 0.012 2.6E-07 68.9 10.6 122 222-350 228-378 (407)
190 PF06258 Mito_fiss_Elm1: Mitoc 96.2 0.45 9.7E-06 53.4 20.6 96 262-370 209-308 (311)
191 COG2099 CobK Precorrin-6x redu 95.3 2 4.3E-05 46.0 19.3 89 28-149 9-104 (257)
192 PHA01630 putative group 1 glyc 94.7 0.18 3.9E-06 57.3 10.8 68 246-313 172-247 (331)
193 TIGR00715 precor6x_red precorr 94.4 6.5 0.00014 42.9 21.4 49 261-309 174-233 (256)
194 KOG1111 N-acetylglucosaminyltr 94.4 1.3 2.8E-05 49.4 15.6 68 246-313 225-309 (426)
195 PF02571 CbiJ: Precorrin-6x re 93.8 9 0.0002 41.6 20.9 151 111-310 59-230 (249)
196 TIGR02195 heptsyl_trn_II lipop 93.4 5.5 0.00012 45.1 19.5 93 213-306 164-277 (334)
197 PRK09814 beta-1,6-galactofuran 93.2 0.48 1E-05 53.8 10.5 109 226-346 171-297 (333)
198 COG3660 Predicted nucleoside-d 92.7 9.9 0.00022 40.9 18.0 84 274-370 239-325 (329)
199 PF08660 Alg14: Oligosaccharid 92.6 0.95 2.1E-05 46.2 10.5 41 108-148 82-131 (170)
200 TIGR02193 heptsyl_trn_I lipopo 92.6 5.4 0.00012 44.9 17.9 119 221-347 177-319 (319)
201 PF13477 Glyco_trans_4_2: Glyc 92.6 1.4 3.1E-05 42.6 11.5 100 17-144 1-105 (139)
202 PRK10916 ADP-heptose:LPS hepto 92.4 8.7 0.00019 43.8 19.4 91 215-306 172-287 (348)
203 PF13579 Glyco_trans_4_4: Glyc 91.2 0.64 1.4E-05 45.4 7.4 97 28-145 2-103 (160)
204 PF13439 Glyco_transf_4: Glyco 90.9 2.6 5.6E-05 41.9 11.6 27 27-53 12-38 (177)
205 PRK10422 lipopolysaccharide co 90.5 34 0.00075 39.0 21.8 84 222-306 182-288 (352)
206 PF06925 MGDG_synth: Monogalac 89.7 0.35 7.6E-06 49.2 4.0 40 108-147 79-126 (169)
207 TIGR02400 trehalose_OtsA alpha 89.3 0.81 1.7E-05 54.4 7.2 68 272-350 348-423 (456)
208 TIGR02201 heptsyl_trn_III lipo 89.1 33 0.00071 39.0 20.1 84 222-306 180-286 (344)
209 cd03789 GT1_LPS_heptosyltransf 88.9 22 0.00048 39.0 18.0 36 272-308 191-226 (279)
210 PF13844 Glyco_transf_41: Glyc 88.8 0.9 1.9E-05 53.4 7.0 114 213-329 275-413 (468)
211 PF01975 SurE: Survival protei 88.8 2.2 4.7E-05 44.6 9.1 30 23-53 7-36 (196)
212 COG0859 RfaF ADP-heptose:LPS h 88.4 50 0.0011 37.5 20.9 84 223-307 175-278 (334)
213 COG3914 Spy Predicted O-linked 87.3 2.6 5.5E-05 50.0 9.3 110 214-329 421-560 (620)
214 COG4370 Uncharacterized protei 85.8 1 2.2E-05 48.9 4.7 92 273-369 305-409 (412)
215 PRK08057 cobalt-precorrin-6x r 85.0 63 0.0014 35.1 21.6 49 261-309 167-225 (248)
216 cd03788 GT1_TPS Trehalose-6-Ph 83.3 1.1 2.3E-05 53.5 4.0 69 271-350 352-428 (460)
217 COG0297 GlgA Glycogen synthase 79.9 7.4 0.00016 46.4 9.3 136 210-348 279-441 (487)
218 PF05159 Capsule_synth: Capsul 79.1 3.8 8.2E-05 45.0 6.2 48 262-310 182-229 (269)
219 PF07429 Glyco_transf_56: 4-al 78.4 19 0.00042 40.6 11.2 80 262-349 245-333 (360)
220 COG0438 RfaG Glycosyltransfera 77.8 5.5 0.00012 43.5 7.2 118 225-350 200-343 (381)
221 cd03793 GT1_Glycogen_synthase_ 77.5 5.7 0.00012 47.9 7.3 71 275-347 470-550 (590)
222 PRK02797 4-alpha-L-fucosyltran 76.4 28 0.00062 38.7 11.7 78 262-347 206-292 (322)
223 PLN03063 alpha,alpha-trehalose 75.1 5.3 0.00012 50.9 6.7 68 273-350 369-444 (797)
224 COG0496 SurE Predicted acid ph 74.4 27 0.00058 37.8 10.7 24 29-53 12-35 (252)
225 TIGR03713 acc_sec_asp1 accesso 73.1 3.1 6.6E-05 50.3 3.7 76 262-350 409-489 (519)
226 PF04464 Glyphos_transf: CDP-G 72.8 3 6.6E-05 48.0 3.5 152 210-368 179-368 (369)
227 PF02374 ArsA_ATPase: Anion-tr 72.7 18 0.00039 40.6 9.5 40 16-55 1-40 (305)
228 cd00550 ArsA_ATPase Oxyanion-t 72.5 28 0.0006 37.9 10.7 38 18-55 2-39 (254)
229 COG0003 ArsA Predicted ATPase 67.4 39 0.00084 38.2 10.6 40 16-55 2-41 (322)
230 KOG0853 Glycosyltransferase [C 65.9 3.8 8.3E-05 48.3 2.3 85 275-365 361-450 (495)
231 PRK10017 colanic acid biosynth 64.7 20 0.00043 42.3 8.0 71 275-351 323-394 (426)
232 PRK13932 stationary phase surv 63.1 1E+02 0.0023 33.6 12.5 36 15-53 5-40 (257)
233 TIGR02919 accessory Sec system 60.9 19 0.00042 42.5 7.0 79 262-350 328-412 (438)
234 PF01075 Glyco_transf_9: Glyco 59.7 29 0.00063 37.2 7.7 84 221-306 103-209 (247)
235 KOG0053 Cystathionine beta-lya 57.8 5.6 0.00012 45.7 1.7 47 400-452 354-402 (409)
236 PRK07812 O-acetylhomoserine am 55.4 5.1 0.00011 47.3 1.0 48 400-452 378-427 (436)
237 PRK08248 O-acetylhomoserine am 55.1 1.8 3.9E-05 51.1 -2.9 48 400-452 374-423 (431)
238 PLN02509 cystathionine beta-ly 54.5 1.8 4E-05 51.4 -2.9 48 400-452 408-457 (464)
239 TIGR01326 OAH_OAS_sulfhy OAH/O 54.2 2.9 6.3E-05 49.2 -1.3 48 400-452 366-415 (418)
240 PRK07049 methionine gamma-lyas 54.0 2.1 4.5E-05 50.5 -2.6 48 400-452 373-422 (427)
241 PF13524 Glyco_trans_1_2: Glyc 53.0 45 0.00098 29.6 6.6 52 288-350 11-63 (92)
242 PRK06084 O-acetylhomoserine am 50.2 7.2 0.00016 46.0 1.1 48 400-452 369-418 (425)
243 PRK12311 rpsB 30S ribosomal pr 50.2 75 0.0016 35.9 9.0 29 118-146 152-183 (326)
244 TIGR00087 surE 5'/3'-nucleotid 50.0 1.5E+02 0.0033 32.1 11.0 21 32-53 15-35 (244)
245 PF04413 Glycos_transf_N: 3-De 48.9 27 0.00059 36.1 5.0 93 21-144 25-124 (186)
246 PRK07504 O-succinylhomoserine 48.5 3.6 7.9E-05 48.0 -1.7 48 400-452 342-391 (398)
247 PRK06176 cystathionine gamma-s 47.6 2.6 5.6E-05 48.9 -3.1 48 400-452 325-374 (380)
248 PRK08249 cystathionine gamma-s 47.4 2.9 6.3E-05 48.8 -2.7 48 400-452 340-389 (398)
249 PRK06434 cystathionine gamma-l 46.3 2.7 5.8E-05 48.8 -3.2 48 400-452 331-380 (384)
250 PRK06767 methionine gamma-lyas 45.8 3.7 8E-05 47.7 -2.2 48 400-452 332-381 (386)
251 COG0052 RpsB Ribosomal protein 45.0 1.1E+02 0.0023 33.1 8.5 28 119-146 157-187 (252)
252 TIGR00725 conserved hypothetic 44.9 72 0.0016 32.1 7.2 39 275-313 86-129 (159)
253 PRK08045 cystathionine gamma-s 44.4 3.4 7.3E-05 48.1 -2.8 48 400-452 329-378 (386)
254 PF00551 Formyl_trans_N: Formy 44.2 67 0.0014 33.0 7.0 35 16-54 1-38 (181)
255 PRK10964 ADP-heptose:LPS hepto 42.9 72 0.0016 35.8 7.8 101 242-348 205-321 (322)
256 PRK08133 O-succinylhomoserine 42.9 4 8.6E-05 47.6 -2.6 47 401-452 338-386 (390)
257 PRK14501 putative bifunctional 42.8 21 0.00045 45.3 3.6 68 272-350 354-429 (726)
258 PRK13935 stationary phase surv 42.4 3.2E+02 0.0069 29.8 12.0 23 30-53 13-35 (253)
259 PRK00346 surE 5'(3')-nucleotid 42.4 2.4E+02 0.0053 30.7 11.2 23 30-53 13-35 (250)
260 TIGR00730 conserved hypothetic 42.2 47 0.001 34.2 5.4 50 276-325 93-153 (178)
261 cd02037 MRP-like MRP (Multiple 42.2 1.4E+02 0.003 29.9 9.0 37 18-54 2-38 (169)
262 PF03641 Lysine_decarbox: Poss 42.2 50 0.0011 32.1 5.4 50 276-325 50-111 (133)
263 PRK07671 cystathionine beta-ly 41.1 4.1 8.8E-05 47.2 -2.8 48 400-452 325-374 (377)
264 PRK05613 O-acetylhomoserine am 41.0 4.1 8.8E-05 48.2 -2.9 47 401-452 384-432 (437)
265 PRK13933 stationary phase surv 40.7 2.3E+02 0.0049 30.9 10.6 20 33-53 16-35 (253)
266 PRK08134 O-acetylhomoserine am 40.6 3.8 8.2E-05 48.4 -3.2 47 401-452 375-423 (433)
267 PRK08861 cystathionine gamma-s 40.3 4.2 9E-05 47.3 -2.9 48 400-452 330-379 (388)
268 PRK05986 cob(I)alamin adenolsy 40.3 1.5E+02 0.0033 30.8 8.8 30 21-50 27-56 (191)
269 PRK05994 O-acetylhomoserine am 39.2 4.5 9.7E-05 47.7 -2.9 47 401-452 374-422 (427)
270 PRK06460 hypothetical protein; 39.1 4.1 8.9E-05 47.2 -3.2 47 401-452 322-370 (376)
271 KOG3339 Predicted glycosyltran 38.6 1E+02 0.0022 31.7 6.8 35 14-50 37-71 (211)
272 TIGR01328 met_gam_lyase methio 38.3 5.9 0.00013 46.1 -2.1 47 401-452 338-386 (391)
273 TIGR01329 cysta_beta_ly_E cyst 38.2 5 0.00011 46.5 -2.7 47 401-452 323-371 (378)
274 TIGR02398 gluc_glyc_Psyn gluco 37.6 68 0.0015 38.5 6.6 66 274-350 376-449 (487)
275 PRK13931 stationary phase surv 37.6 3.1E+02 0.0066 30.1 11.1 34 113-146 82-129 (261)
276 PRK06234 methionine gamma-lyas 36.2 5.8 0.00013 46.3 -2.6 47 401-452 345-393 (400)
277 PRK05939 hypothetical protein; 36.2 6.1 0.00013 46.1 -2.4 48 400-452 343-392 (397)
278 cd00561 CobA_CobO_BtuR ATP:cor 35.8 3.5E+02 0.0076 27.3 10.4 29 22-50 8-36 (159)
279 PF12000 Glyco_trans_4_3: Gkyc 35.8 3.2E+02 0.007 27.9 10.2 30 116-145 64-95 (171)
280 TIGR02080 O_succ_thio_ly O-suc 35.1 5.8 0.00013 46.1 -2.8 47 401-452 329-377 (382)
281 PRK06702 O-acetylhomoserine am 34.3 6.4 0.00014 46.4 -2.6 48 400-452 371-420 (432)
282 PRK07503 methionine gamma-lyas 34.1 7.6 0.00016 45.4 -2.1 44 404-452 347-392 (403)
283 PRK08776 cystathionine gamma-s 33.8 5.3 0.00012 46.7 -3.4 48 401-453 338-387 (405)
284 PRK13934 stationary phase surv 33.5 3E+02 0.0065 30.2 10.1 24 29-53 12-35 (266)
285 cd01425 RPS2 Ribosomal protein 32.8 2E+02 0.0043 29.9 8.5 28 27-54 39-66 (193)
286 COG0626 MetC Cystathionine bet 32.5 8.2 0.00018 44.7 -2.1 48 400-452 341-390 (396)
287 PRK07414 cob(I)yrinic acid a,c 31.9 2.9E+02 0.0062 28.4 9.1 30 21-50 26-55 (178)
288 PF01053 Cys_Met_Meta_PP: Cys/ 30.2 4 8.6E-05 47.4 -5.2 47 400-451 334-382 (386)
289 COG2327 WcaK Polysaccharide py 29.8 1.6E+02 0.0034 34.1 7.5 82 262-350 266-351 (385)
290 TIGR01325 O_suc_HS_sulf O-succ 29.4 7.6 0.00017 45.0 -3.1 47 401-452 330-378 (380)
291 PRK08574 cystathionine gamma-s 28.8 8 0.00017 44.9 -3.0 48 400-452 331-380 (385)
292 PF02441 Flavoprotein: Flavopr 28.6 79 0.0017 30.4 4.3 35 17-53 2-36 (129)
293 PRK01077 cobyrinic acid a,c-di 28.3 3.1E+02 0.0068 32.5 10.2 34 21-54 9-42 (451)
294 PF05014 Nuc_deoxyrib_tr: Nucl 27.1 86 0.0019 29.3 4.2 34 275-308 57-98 (113)
295 cd03109 DTBS Dethiobiotin synt 27.1 88 0.0019 30.3 4.4 36 19-54 2-37 (134)
296 CHL00067 rps2 ribosomal protei 27.0 2.7E+02 0.0058 29.9 8.4 29 118-146 161-192 (230)
297 PRK06849 hypothetical protein; 26.8 2.2E+02 0.0047 33.0 8.4 23 32-54 16-38 (389)
298 PRK05299 rpsB 30S ribosomal pr 26.3 2.9E+02 0.0063 30.2 8.6 29 118-146 157-188 (258)
299 PF07355 GRDB: Glycine/sarcosi 25.5 1.4E+02 0.0029 34.0 5.9 39 106-144 68-117 (349)
300 PRK04539 ppnK inorganic polyph 24.5 1.7E+02 0.0037 32.7 6.5 58 275-350 64-125 (296)
301 PRK07810 O-succinylhomoserine 24.1 11 0.00024 44.0 -3.0 48 400-452 351-400 (403)
302 TIGR00708 cobA cob(I)alamin ad 24.1 6.5E+02 0.014 25.7 10.1 30 21-50 10-39 (173)
303 COG1797 CobB Cobyrinic acid a, 23.8 1.1E+02 0.0025 35.6 5.0 39 18-56 3-41 (451)
304 PRK12815 carB carbamoyl phosph 22.6 5.5E+02 0.012 34.3 11.7 24 31-54 576-599 (1068)
305 COG1703 ArgK Putative periplas 22.3 4.3E+02 0.0092 29.6 8.8 33 22-54 57-89 (323)
306 KOG4180 Predicted kinase [Gene 22.3 87 0.0019 34.8 3.5 58 277-347 103-164 (395)
307 KOG0780 Signal recognition par 21.9 1.4E+02 0.0031 34.3 5.1 38 16-54 102-139 (483)
308 PRK08305 spoVFB dipicolinate s 21.5 1.4E+02 0.003 31.3 4.7 36 16-53 6-42 (196)
309 COG4088 Predicted nucleotide k 21.5 87 0.0019 33.0 3.2 32 21-52 6-37 (261)
310 PRK07811 cystathionine gamma-s 20.6 23 0.00049 41.3 -1.4 43 402-452 340-384 (388)
311 PF00448 SRP54: SRP54-type pro 20.5 7.2E+02 0.016 25.8 10.0 35 20-54 5-39 (196)
312 PRK05905 hypothetical protein; 20.2 79 0.0017 34.6 2.8 32 894-939 222-253 (258)
313 PRK05920 aromatic acid decarbo 20.2 1.5E+02 0.0033 31.2 4.7 36 17-54 5-40 (204)
314 KOG0832 Mitochondrial/chloropl 20.2 1.1E+02 0.0023 32.5 3.5 112 21-144 85-202 (251)
No 1
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.7e-76 Score=635.87 Aligned_cols=380 Identities=30% Similarity=0.471 Sum_probs=318.9
Q ss_pred HHHHHHHhcCCCCCCceEEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCC
Q 001939 481 MRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMP 560 (993)
Q Consensus 481 ~~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 560 (993)
.+-..-++..|+..++...++||||||||||||||+||+|||||||.++++++++++|.+++++
T Consensus 7 ~~~~~~f~~~f~~~~~~~~~~aPGRvNLIGEHtDYn~G~VlP~Ain~~t~v~v~~r~d~~v~l~---------------- 70 (390)
T COG0153 7 EKLQALFAEHFGYVEPTVTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKRDDGKVRLY---------------- 70 (390)
T ss_pred HHHHHHHHHHhcccCcceEecCCceEEeeccceeccCceEEEEEeecceEEEEEEccCceEEEE----------------
Confidence 3344556677775467788999999999999999999999999999999999999999765554
Q ss_pred eEEEEecccccCCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCC
Q 001939 561 VLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAV 640 (993)
Q Consensus 561 ~i~i~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~i 640 (993)
|.+ +.+....+..+ ++ +. ..+..+|.||++|++.. +++.|..+ .|++++|.|+|
T Consensus 71 -----s~n--~~~~~~~~~~~-~d-------~~---------~~~~~~W~nYvkgvi~~-l~~~g~~~-~G~~i~i~gnI 124 (390)
T COG0153 71 -----SAN--FGNAGDIFFLL-LD-------IA---------KEKIDDWANYVKGVIKA-LQKRGYAF-TGLDIVISGNI 124 (390)
T ss_pred -----eCC--Cccccceeecc-hh-------hc---------ccccchhhhhHHHHHHH-HHhcCCCc-CCeeEEEecCC
Confidence 332 11211112111 11 11 13347999999999886 56788888 79999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeec
Q 001939 641 PEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVE 720 (993)
Q Consensus 641 P~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~ 720 (993)
|.|+|||||||++|+++.++..+++.++++.+|+++|+++||+|+|++||+|||++++||+.++++++||+++++ +++|
T Consensus 125 P~GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AEn~fvGvn~G~mDQ~~s~~G~~~~al~ld~~~l~~-~~~~ 203 (390)
T COG0153 125 PIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLDCRTLEY-EPVP 203 (390)
T ss_pred CCCCCcCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccCCcCchHHHHHHHhCCCCcEEEEEcccCce-EEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887 8999
Q ss_pred CCCC-eEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhc
Q 001939 721 IPSH-IRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCN 799 (993)
Q Consensus 721 ~p~~-~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~ 799 (993)
+|.+ +.|+|+||+++|.++.++||.||++|.- |++ .|+. .++.|++
T Consensus 204 ~p~~~~~ivI~ns~vkr~la~seYn~Rr~ece~--------A~~-----------------------~l~~--~~~~L~d 250 (390)
T COG0153 204 FPVGGVSIVIVNSNVKRELADSEYNERRAECEE--------AAE-----------------------FLGV--SIKSLRD 250 (390)
T ss_pred cCccceEEEEecCCCccccchhHHHHHHHHHHH--------HHH-----------------------HHHH--hhhhhhh
Confidence 9965 9999999999999999999999998832 222 2222 1467899
Q ss_pred CChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHH
Q 001939 800 LSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGE 879 (993)
Q Consensus 800 ~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~ 879 (993)
++.+.|.+. +..+. . |+ .+++|++|+++||+||.++.++|+++ |+..||+
T Consensus 251 ~~~~~~~~~-----~~~i~----------------~-~~----~~~rRa~hvv~En~Rvl~a~~Al~~~----dl~~fG~ 300 (390)
T COG0153 251 VTDEEFAAL-----QAEIE----------------V-DP----KIARRARHVVTENQRVLEAAKALRSG----DLTEFGE 300 (390)
T ss_pred cCHHHHHhh-----hhhcc----------------c-ch----HHHHHHHHHHhHHHHHHHHHHHHHcC----CHHHHHH
Confidence 888887653 22221 0 11 26789999999999999999999996 8999999
Q ss_pred HHHHhhhhhhh-cCCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHh
Q 001939 880 LLYQCHYSYSA-CGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKD 958 (993)
Q Consensus 880 Lm~~sH~slr~-~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~ 958 (993)
||++||.|||+ |+|||||||+||++|... .|++||||||||||||+|+|.+++. .++++++|.++|++
T Consensus 301 Lm~~SH~slrddyevt~pElD~lve~a~~~----------~G~~GaRmTGaGfGGc~IaLv~~~~-v~~~~e~v~~~y~~ 369 (390)
T COG0153 301 LMNESHESLRDDYEVTCPELDTLVEIALAA----------GGAYGARMTGAGFGGCVIALVPNDD-VEAVAEAVAEEYEK 369 (390)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHc----------CCcccceecCCCCCceEEEEechhh-HHHHHHHHHHhHHh
Confidence 99999999999 699999999999999862 6889999999999999998876543 46999999999999
Q ss_pred hcCCCCcEEee-cCCCCcce
Q 001939 959 ATGYLPLIIEG-SSPGAGKF 977 (993)
Q Consensus 959 ~~g~~~~~~~~-~~~G~~~~ 977 (993)
.+|+++.+|++ .++|++++
T Consensus 370 ~~g~k~~~yv~~~~~G~~~~ 389 (390)
T COG0153 370 VTGLKAAFYVVEASQGAGVC 389 (390)
T ss_pred hcCccccEEEEeccCCcccc
Confidence 99999999998 79998864
No 2
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=1.5e-67 Score=603.99 Aligned_cols=389 Identities=23% Similarity=0.348 Sum_probs=297.9
Q ss_pred HHHHHHHhcCCCCCCc-----eEEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCC
Q 001939 481 MRERKAAAGLFNWEEE-----IFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKG 555 (993)
Q Consensus 481 ~~~~~~~~~~f~~~~~-----~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~ 555 (993)
..-+..|.+.||.+++ .++++||||||||||||||+||+||||||+++|+|+++++.+..
T Consensus 16 ~~l~~~F~~~fG~~p~~~~~~~~~~~APGRVnLIGEHtDYngG~VLp~AId~~~~va~~~~~~~~--------------- 80 (468)
T PTZ00290 16 STLKPIFLETFKVENDADVEWLLFTFAPGRVNFIGEHVDYMGGYVCPAAVLEGCHILVGRVKHFC--------------- 80 (468)
T ss_pred HHHHHHHHHHhCCCcccccceeEEEeccceeeecccccccCCCeeeeccccCcEEEEEeecCCCC---------------
Confidence 3345677899997653 17889999999999999999999999999999999998874311
Q ss_pred CCCCCeEEEEecccccCCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCC----CCC
Q 001939 556 QGPMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRF----EDS 631 (993)
Q Consensus 556 ~~~~~~i~i~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~----~~g 631 (993)
.+.+++.+.. + ..|+++ +.. ...+...|.||++|++..++++.|..+ ..|
T Consensus 81 ---~~~i~~~~~~----~--~~~~~~--~~~---------------~~~~~~~W~nYv~gv~~~~l~~~g~~~~~~~~~G 134 (468)
T PTZ00290 81 ---DHKLRFATET----D--EHFVLD--HLG---------------GAKHNKAWTTFVRGAATLRLNRLGVAIDAPSLQG 134 (468)
T ss_pred ---CCeEEEEECC----C--ceeecC--ccc---------------ccCCcccHHHHHHHHHHHHHHHhCCCcccCCCCC
Confidence 1234443221 1 123222 110 012336899999999987677777642 269
Q ss_pred EEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCC-----C------------C---CHHHHHHHHHHHhccccCCCCCc
Q 001939 632 ISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGL-----N------------I---HPRDLALLCQKVENHIVGAPCGV 691 (993)
Q Consensus 632 ~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~-----~------------l---~~~el~~la~~~E~~~~G~~~G~ 691 (993)
|++.|.|+||.|+|||||||++||++.|++.+++. . + +..+|+.+|+++|+.++|+|||+
T Consensus 135 ~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~aqraEn~~vGv~cGi 214 (468)
T PTZ00290 135 VCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQARRIETEFCGVNVGI 214 (468)
T ss_pred eEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccccccccccCcccHHHHHHHHHHHHHhhcCCCcch
Confidence 99999999999999999999999999999998732 1 2 34899999999999999999999
Q ss_pred chhhHhhccccceEEEEeecCccceeeecCC----CCeEEEEEeCCCccccCCC---CccchhhhhhcchhhHHhhhhcc
Q 001939 692 MDQMASACGEANKLLAMVCQPAELLGVVEIP----SHIRFWGIDSGIRHSVGGA---DYGSVRAGAFMGRKMIKSTASGM 764 (993)
Q Consensus 692 mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p----~~~~~ll~dSgv~~~~~~~---~y~~~r~~~~~~~~~v~~~a~~~ 764 (993)
|||++|++|+.++++++||+++++ ++++++ .++.|||+||+++|+..++ +||.||.+|..+.+.+
T Consensus 215 MDQ~asa~g~~~~al~iD~~~l~~-~~v~l~~~~~~~~~~vV~nS~v~h~l~~s~~~~Yn~Rr~ece~a~~~L------- 286 (468)
T PTZ00290 215 MDQFISAFAEEDKFMFLDCKSLTF-ESHDMTPLLGDGACFLLIDSMIKHDLLGGTAGMYNTVRSDQEGAQKKI------- 286 (468)
T ss_pred hhHHHHHhCCCCcEEEEecCCCeE-EEeccCCCCCCCcEEEEEeCCCcchhccccchhhHHHHHHHHHHHHHh-------
Confidence 999999999999999999998876 678764 4799999999999998766 9999999985333222
Q ss_pred CcccCCCCCCCCCCCccchhhHHHHHhhhh-hHhhcC--Ch---------HHHHHHHhhcCCccchhhhhhhhcCCCCCC
Q 001939 765 LPQSLPSSNGLNNIEPEVDGVELLEAEASL-DYLCNL--SP---------HRFEALYAKNIPESIVGEEFSKNYGDHNDP 832 (993)
Q Consensus 765 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~L~~~--~~---------~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~ 832 (993)
.+.. ++ .+ ..||++ .+ ..+...+...+|+
T Consensus 287 -~~~~---------------l~------~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~----------------- 327 (468)
T PTZ00290 287 -GKHR---------------YR------GKPFTFSDLVRNPKKYTFDGDVVAFMESCKPLMTP----------------- 327 (468)
T ss_pred -cccc---------------cc------chhhhHHHhhhccccccccccHHHHHHHhhhcCCH-----------------
Confidence 1100 00 01 123333 11 1111111111111
Q ss_pred ceecCCCcccccccccccccchhhHHHHHHHHHHccC---ChhHHHHHHHHHHHhhhhhhh-cCCCCchHHHHHHHHHHH
Q 001939 833 VTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAA---SDDQLTSLGELLYQCHYSYSA-CGLGSDGTDRLVQLVQEI 908 (993)
Q Consensus 833 ~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~---~~~~l~~lG~Lm~~sH~slr~-~~vs~~~lD~lv~~a~~~ 908 (993)
.+++|++|+|+||.||.+|+++|++.. ..++++.||+||++||.|||+ ++||||+||.||+.+.+.
T Consensus 328 ----------~~~~Ra~HVitEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~~~~ 397 (468)
T PTZ00290 328 ----------GEFERGTYNIMEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEE 397 (468)
T ss_pred ----------HHHHHHHHHhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 367899999999999999999996210 124799999999999999999 799999999999987541
Q ss_pred hhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCcEEee-cCCCCccee
Q 001939 909 QHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG-SSPGAGKFG 978 (993)
Q Consensus 909 ~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~-~~~G~~~~~ 978 (993)
.|++||||||||||||+++|.+.+. .+++++++.+.|++++|.+|.+|++ +++|++.+.
T Consensus 398 ----------~G~~GaRlTGaG~GGc~i~Lv~~~~-~~~~~~~v~~~y~~~~g~~~~~~~~~~~~Ga~~~~ 457 (468)
T PTZ00290 398 ----------KGVAGGRMMGGGFGGCIILLLKKNA-VDRVVAHVREKFKARFGVENDVYPVVAGDGAFVVS 457 (468)
T ss_pred ----------CCCcEEEEecCCCceEEEEEechhh-HHHHHHHHHHHHHHhhCCCCcEEEEecCCCcEEEe
Confidence 6999999999999999997766543 2689999999999999999999998 799999873
No 3
>PLN02865 galactokinase
Probab=100.00 E-value=3.6e-67 Score=595.95 Aligned_cols=390 Identities=20% Similarity=0.277 Sum_probs=312.1
Q ss_pred HHHHHHhcCCCCCCc-eEEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCC
Q 001939 482 RERKAAAGLFNWEEE-IFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMP 560 (993)
Q Consensus 482 ~~~~~~~~~f~~~~~-~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 560 (993)
+-+..|...||.+++ ..+++|||||||||||+||+||+||||||+++|+++++++++++++
T Consensus 14 ~l~~~F~~~fg~~p~~~~~~~APGRVnlIGEHtDYngG~VLp~AI~~~~~va~~~~~~~~i~------------------ 75 (423)
T PLN02865 14 EIRERVAAMSGRNSGEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDPEVL------------------ 75 (423)
T ss_pred HHHHHHHHHhCCCcccceEEEcCcceecccccccCCCCeEEeEEeeccEEEEEEECCCCEEE------------------
Confidence 456678899997654 2578999999999999999999999999999999999999886544
Q ss_pred eEEEEecccccCCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCC
Q 001939 561 VLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAV 640 (993)
Q Consensus 561 ~i~i~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~i 640 (993)
+.|.+ +.+ .+++++++.. .|+.+. .....+...|.||++|++..+. +.|.....||++.|.|+|
T Consensus 76 ---v~s~~--~~~---~~~~~~~~~~---~~~~~~----~~~~~~~~~W~~Yv~gv~~~l~-~~g~~~~~G~~~~v~g~v 139 (423)
T PLN02865 76 ---LRSAQ--FEG---EVRFRVDEIQ---HPIANV----SSDSKEESNWGDYARGAVYALQ-SRGHALSQGITGYISGSE 139 (423)
T ss_pred ---EEECC--CCC---ceEEeccccc---cccccc----cccCCCCCCHHHHHHHHHHHHH-HcCCCCCCceEEEEECCC
Confidence 33332 111 1233332210 011000 0012344789999999999764 677654469999999999
Q ss_pred -CCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeee
Q 001939 641 -PEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVV 719 (993)
Q Consensus 641 -P~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v 719 (993)
|.|+|||||||++||++.|++.+++.++++++++++|+.+|+.++|+|||+|||+++++|..++++++||+++.+ +.+
T Consensus 140 pP~gsGLsSSAAl~va~~~al~~~~~~~~~~~~la~~a~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~iDf~~l~~-~~v 218 (423)
T PLN02865 140 GLDSSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRLIENEYLGLRNGILDQSAILLSRYGCLTFMDCKTLDH-KLV 218 (423)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccccHHHHHhcccCceEEEEccCCCc-cee
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999776 677
Q ss_pred cCC-------CCeEEEEEeCCCccccC-CCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHh
Q 001939 720 EIP-------SHIRFWGIDSGIRHSVG-GADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAE 791 (993)
Q Consensus 720 ~~p-------~~~~~ll~dSgv~~~~~-~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 791 (993)
++| .++.|+++||+++|... +++||.||.+|..+.+++ .++++..
T Consensus 219 pl~~~~~~~~~~~~ivv~~s~~~h~l~~~~~Yn~Rr~Ec~~aa~~l--------~~~~~~~------------------- 271 (423)
T PLN02865 219 SLQFQQPGGEKPFKILLAFSGLRHALTNKPGYNLRVSECQEAARFL--------LEASGND------------------- 271 (423)
T ss_pred ecCcccccCCCCeEEEEEeCCCchhhcccchhhHHHHHHHHHHHHH--------HHhcCCc-------------------
Confidence 765 36899999999999977 789999999985433333 2211100
Q ss_pred hhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCCh
Q 001939 792 ASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASD 871 (993)
Q Consensus 792 ~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~ 871 (993)
.....||+++.+++.... ..+++ .+++|++|+++||.||.++.++|+++
T Consensus 272 ~~~~~Lr~~~~~~~~~~~-~~l~~---------------------------~l~~Ra~Hv~~E~~Rv~~~~~al~~~--- 320 (423)
T PLN02865 272 ELEPLLCNVEPEVYEAHK-CKLEA---------------------------VLARRAEHYFSENMRVIKGVEAWASG--- 320 (423)
T ss_pred cchhhhhcCCHHHHHHHH-hhcCH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 013468888887765421 12221 25689999999999999999999996
Q ss_pred hHHHHHHHHHHHhhhhhhh-cCCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHH
Q 001939 872 DQLTSLGELLYQCHYSYSA-CGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVL 950 (993)
Q Consensus 872 ~~l~~lG~Lm~~sH~slr~-~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~ 950 (993)
|++.||+||++||.|||+ |+|||||+|.||+.+++ ..|++||||||||||||+++|.+.+. .+++++
T Consensus 321 -d~~~~g~lm~~sh~Slrd~yevS~~eld~lv~~a~~----------~~Ga~GaR~tGgGfGGc~vaLv~~~~-~~~~~~ 388 (423)
T PLN02865 321 -NLEEFGKLISASGLSSIENYECGCEPLIQLYEILLK----------APGVYGARFSGAGFRGCCVAFVDAEM-AEEAAS 388 (423)
T ss_pred -CHHHHHHHHHHhhhhHHhhccCCcHHHHHHHHHHHh----------cCCCeEEEEeccCCccEEEEEEchhH-HHHHHH
Confidence 999999999999999999 79999999999999987 25999999999999999997765433 358999
Q ss_pred HHHHHHHhh-------cCCCCcEEee-cCCCCcc
Q 001939 951 EIQQRYKDA-------TGYLPLIIEG-SSPGAGK 976 (993)
Q Consensus 951 ~i~~~y~~~-------~g~~~~~~~~-~~~G~~~ 976 (993)
+|.++|+++ +|.++.+|.+ +++|+++
T Consensus 389 ~v~~~Y~~~~p~~~~~~~~~~~~~~~~p~~Ga~~ 422 (423)
T PLN02865 389 FVRDEYEKAQPELASNINGDKPVLICEAGDCARV 422 (423)
T ss_pred HHHHHHHhhccccccccCCCCcEEEEecCCCccc
Confidence 999999985 5899999997 7899875
No 4
>PLN02521 galactokinase
Probab=100.00 E-value=4.6e-64 Score=583.22 Aligned_cols=420 Identities=22% Similarity=0.358 Sum_probs=309.9
Q ss_pred HHHHHhcCCCCCCceEEEEcCcccccccccccccCCeeeccccccceEEEEEecCc-chhhhhhhhhhccCCCCCCCCCe
Q 001939 483 ERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISP-SKQRLWKHALARHNDKGQGPMPV 561 (993)
Q Consensus 483 ~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~ 561 (993)
-...|.+.||.+ |.++++|||||||||||+||+||+||||||+++++++++++++ ++
T Consensus 35 l~~~F~~~fg~~-p~~~~~APGRVnLiGEHtDy~gg~vLp~AI~~~~~v~~~~~~~~~~--------------------- 92 (497)
T PLN02521 35 LKAAFVEVYGAK-PDLFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRRAEGSKK--------------------- 92 (497)
T ss_pred HHHHHHHHHCCC-CCEEEECCceEEEeccceeecCCeEEEEEEcCcEEEEEEEcCCCCE---------------------
Confidence 445578899975 5578999999999999999999999999999999999999876 43
Q ss_pred EEEEecccccCCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHH----HHHHHHHHHHhCCCC--CCCEEEE
Q 001939 562 LQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYV----AGTILVLMTELGVRF--EDSISML 635 (993)
Q Consensus 562 i~i~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv----~~~i~~~~~~~g~~~--~~g~~i~ 635 (993)
+++.+.+... +.+.++++... + .......|.||+ ++++..+ .+.+..+ ..|+++.
T Consensus 93 i~i~s~~~~~----~~~~~~~~~~~----~----------~~~~~~~W~nYv~~~~~gv~~~l-~~~~~~~~~~~g~~i~ 153 (497)
T PLN02521 93 LRIANVNDKY----TTCTFPADPDQ----E----------VDLANHKWGNYFICGYKGVFEFL-KSKGVDVGPPVGLDVV 153 (497)
T ss_pred EEEEECCCCC----CceeeecCccc----c----------cccccccHHHHHHHHHHHHHHHH-HHhccccCCCCCeEEE
Confidence 3344332111 01122221100 0 012345799999 6666543 3444322 1499999
Q ss_pred EEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccc
Q 001939 636 VSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAEL 715 (993)
Q Consensus 636 i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~ 715 (993)
|.|+||+|+|||||||++||++.|++.+++.++++++++++|+++|+ +.|.+||+|||+++++|+.|+++++||+++++
T Consensus 154 i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~E~-~~g~~~g~mDq~as~~g~~g~al~~d~~~l~~ 232 (497)
T PLN02521 154 VDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCER-HIGTQSGGMDQAISIMAQQGVAKLIDFNPVRA 232 (497)
T ss_pred EecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhC-ccCCCCChHHHHHHHhcCCCcEEEEecCCCce
Confidence 99999999999999999999999999999999999999999999999 57889999999999999999999999999876
Q ss_pred eeeecCCCCeEEEEEeCCCccc---cCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhh
Q 001939 716 LGVVEIPSHIRFWGIDSGIRHS---VGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEA 792 (993)
Q Consensus 716 ~~~v~~p~~~~~ll~dSgv~~~---~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 792 (993)
+++++|.++.|||+||+++|. +++++||.||.+|..+.+++ .++.+... . .+ ..
T Consensus 233 -~~v~~p~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L--------~~~~~~~~----~----~~------~~ 289 (497)
T PLN02521 233 -TDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVL--------AVKLGMSA----E----EA------IS 289 (497)
T ss_pred -EEeecCCCcEEEEEECCCcccccccccccccHHHHHHHHHHHHH--------HhhcCCcc----h----hc------cc
Confidence 789999899999999996654 88889999999996544443 22211000 0 00 00
Q ss_pred hhhHhhcCCh-----------HHHHHHHhhcCCccc-hhhhh--------hhhcCCCCCCceecCCCccccccccccccc
Q 001939 793 SLDYLCNLSP-----------HRFEALYAKNIPESI-VGEEF--------SKNYGDHNDPVTVIDPKRTYFVRAPVCHPI 852 (993)
Q Consensus 793 ~~~~L~~~~~-----------~~~~~~~~~~lp~~i-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v 852 (993)
.+..||++.. .++.......+++.. +.+++ .+.+.++.+.+++++..+.|.+++|++|+|
T Consensus 290 ~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ra~Hvv 369 (497)
T PLN02521 290 KVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKHFKLHQRAVHVY 369 (497)
T ss_pred ccCCHHHHHHHHhhhcccccchhhHHHhhhhhccccCCHHHHHHHhCCcHHHHhhccccccccccccchhHHhhhhhhee
Confidence 0111222100 000000111111111 11111 112222334455565667788999999999
Q ss_pred chhhHHHHHHHHHHccCCh-hHHHHHHHHHHHhhhhhhh-cCCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccc
Q 001939 853 YENFRVKAFKALLTAAASD-DQLTSLGELLYQCHYSYSA-CGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGG 930 (993)
Q Consensus 853 ~E~~Rv~~~~~al~~~~~~-~~l~~lG~Lm~~sH~slr~-~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG 930 (993)
+||.||.+++++|+++.++ +++..||+||++||.|||+ ++||||++|.|+++|++ .|++||||||||
T Consensus 370 ~E~~RV~~~~~al~~~~~~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~-----------~Ga~GaRltGaG 438 (497)
T PLN02521 370 SEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRD-----------NGALGARLTGAG 438 (497)
T ss_pred cHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHh-----------cCCcEEEECCCC
Confidence 9999999999999986333 3599999999999999998 59999999999999998 699999999999
Q ss_pred cCceEEEEccCCcccHHHHHHHHHHHHhh---------cCCCCcEEee-cCCCCcceee
Q 001939 931 SGGTICVIGRNSLRSSEQVLEIQQRYKDA---------TGYLPLIIEG-SSPGAGKFGH 979 (993)
Q Consensus 931 ~GG~vi~l~~~~~~~~~~~~~i~~~y~~~---------~g~~~~~~~~-~~~G~~~~~~ 979 (993)
||||++++.+.+. .+++++.+.++|+++ ++..+.+|.+ +++||+++.+
T Consensus 439 ~GG~~i~lv~~~~-~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~~~~~ 496 (497)
T PLN02521 439 WGGCAVALVKEAI-VPQFILALKEKFYKSRIEKGVIKEEDLGLYVFASKPSSGAAILKF 496 (497)
T ss_pred CCeEEEEEECHHH-HHHHHHHHHHHHHhhccccccccccCCCCcEEEEecCCCceEeec
Confidence 9999997776543 358999999999987 4889999997 7999987654
No 5
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=1.4e-62 Score=561.42 Aligned_cols=378 Identities=24% Similarity=0.358 Sum_probs=308.4
Q ss_pred HHHHHhcCCCCCCceEEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeE
Q 001939 483 ERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVL 562 (993)
Q Consensus 483 ~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i 562 (993)
....|...||.+ |..+++|||||||+|||+||+||+||++||++++++++++++++++
T Consensus 6 ~~~~f~~~fg~~-p~~~~~APgRv~L~GEH~d~~g~~vl~~AI~~~~~v~~~~~~~~~i--------------------- 63 (387)
T PRK05322 6 LKKKFAEVFGEE-AEDVFFSPGRINLIGEHTDYNGGHVFPAAITLGTYGAARKRDDKKV--------------------- 63 (387)
T ss_pred HHHHHHHHhCCC-CceEEEcCceeEecccceeecCceeeeeeccceEEEEEEECCCCEE---------------------
Confidence 344577889965 5578899999999999999999999999999999999999987654
Q ss_pred EEEecccccCCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCC
Q 001939 563 QIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPE 642 (993)
Q Consensus 563 ~i~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~ 642 (993)
++.|.+. +....++++++++. ......|.+|+++++..+ +..+.....|+++.|.|+||+
T Consensus 64 ~i~s~~~---~~~~~~~~~~~~~~----------------~~~~~~w~~y~~gvi~~l-~~~~~~~~~g~~i~i~s~iP~ 123 (387)
T PRK05322 64 RLYSANF---EDLGIIEFDLDDLS----------------FDKEDDWANYPKGVLKFL-QEAGYKIDHGFDILIYGNIPN 123 (387)
T ss_pred EEEECCC---CCCceEEEeccccC----------------CCCccchHHHHHHHHHHH-HHcCCCCCCCEEEEEecCCCC
Confidence 4443321 10011233332210 123367999999998864 456654336999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCC
Q 001939 643 GKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP 722 (993)
Q Consensus 643 g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p 722 (993)
|+|||||||++||++.|++.+++.++++++++++|+.+|+.+||+|||+|||+++++||.++++++||++.+. +.++++
T Consensus 124 gsGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~sG~mDq~as~~G~~~~~~~~d~~~~~~-~~~~~~ 202 (387)
T PRK05322 124 GAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLDCNTLEY-EYVPLD 202 (387)
T ss_pred CCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhccCCCCcchHHHHHHHhccCCeEEEEecCCCce-EEeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988765 677776
Q ss_pred -CCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCC
Q 001939 723 -SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLS 801 (993)
Q Consensus 723 -~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~ 801 (993)
.++.|+|+|||++|++++++||.||.+|....+.+. ....+..||++.
T Consensus 203 ~~~~~lvv~dsg~~~~~~~~~yn~r~~e~~~a~~~l~-------------------------------~~~~~~~l~~~~ 251 (387)
T PRK05322 203 LGDYVIVIMNTNKRRELADSKYNERRAECEKALEELQ-------------------------------KKLDIKSLGELT 251 (387)
T ss_pred CCCeEEEEEECCCccccCcchhhHHHHHHHHHHHHHh-------------------------------hhcCccchhcCC
Confidence 467899999999999999999999999843222221 111234577877
Q ss_pred hHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHH
Q 001939 802 PHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELL 881 (993)
Q Consensus 802 ~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm 881 (993)
+++++... ..+++ + .+++|++|++.|+.||..+..+|+++ |++.||++|
T Consensus 252 ~~~~~~~~-~~~~~----------------~----------~~~~r~~h~v~e~~r~~~~~~al~~~----d~~~lg~lm 300 (387)
T PRK05322 252 EEEFDEYS-YLIKD----------------E----------TLLKRARHAVTENQRTLKAVKALKAG----DLEKFGRLM 300 (387)
T ss_pred HHHHHHHH-hhcCC----------------H----------HHHHHHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHH
Confidence 77765532 12210 0 25679999999999999999999996 999999999
Q ss_pred HHhhhhhhh-cCCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhc
Q 001939 882 YQCHYSYSA-CGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDAT 960 (993)
Q Consensus 882 ~~sH~slr~-~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~ 960 (993)
++||.+|++ +++|+|++|.|++++++ ..|++|+||||||||||++++.+.+. .+++.+.+.+.|++++
T Consensus 301 ~~sh~~L~~~y~~s~~eld~lv~~a~~----------~~Ga~garlsGaG~GG~vial~~~~~-~~~~~~~l~~~y~~~~ 369 (387)
T PRK05322 301 NASHVSLRDDYEVTGLELDTLVEAAWK----------QEGVLGARMTGAGFGGCAIAIVKKDK-VEAFKENVGKAYEEKI 369 (387)
T ss_pred HHhhHHHHhhhcCCCHhHHHHHHHHHh----------cCCccEEEEecCCCceEEEEEEcHHH-HHHHHHHHHHHHHHhc
Confidence 999999996 89999999999999974 16999999999999999998766543 3589999999999999
Q ss_pred CCCCcEEee-cCCCCcc
Q 001939 961 GYLPLIIEG-SSPGAGK 976 (993)
Q Consensus 961 g~~~~~~~~-~~~G~~~ 976 (993)
|.+|.+|.+ +++|++.
T Consensus 370 ~~~~~~~~~~~~~Ga~~ 386 (387)
T PRK05322 370 GYAASFYVAEIGDGARE 386 (387)
T ss_pred CCCCcEEEEecCCCccc
Confidence 999999998 7999875
No 6
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=2.1e-61 Score=551.51 Aligned_cols=373 Identities=28% Similarity=0.440 Sum_probs=305.1
Q ss_pred HHHHHHhcCCCCCCceEEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCe
Q 001939 482 RERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPV 561 (993)
Q Consensus 482 ~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 561 (993)
+-...|...||.+ |.++++|||||||+|||+||+|++||++|||++++|.+++++++.++
T Consensus 6 ~~~~~f~~~fg~~-p~~~~~APgRvnL~GeH~Dy~gg~vL~~AId~~~~v~i~~~~~~~i~------------------- 65 (382)
T PRK05101 6 KTQSLFAQQFGYP-PTHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKRDDRIVR------------------- 65 (382)
T ss_pred HHHHHHHHHhCCC-CCeEEECCceEEEeccceeecCCEEEEEEecccEEEEEEECCCCEEE-------------------
Confidence 3556677889975 55789999999999999999999999999999999999998876543
Q ss_pred EEEEecccccCCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCC
Q 001939 562 LQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVP 641 (993)
Q Consensus 562 i~i~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP 641 (993)
+.+...+ .. ...++++. ++ ...+...|.||+++++..+. ..+... .|+++.|.|+||
T Consensus 66 --v~s~~~~--~~--~~~~~~~~------~~---------~~~~~~~w~~yv~~~~~~l~-~~~~~~-~g~~i~i~~~iP 122 (382)
T PRK05101 66 --VIAADYD--NQ--QDEFSLDA------PI---------VPHPEQQWANYVRGVVKHLQ-ERNPDF-GGADLVISGNVP 122 (382)
T ss_pred --EEECCCC--CC--ceEEecCc------cc---------ccCCCCchHHHHHHHHHHHH-HhCCCC-CCeEEEEeCCCC
Confidence 3332111 00 11223221 11 01334689999999998754 444443 699999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecC
Q 001939 642 EGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEI 721 (993)
Q Consensus 642 ~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~ 721 (993)
+|+|||||||++||++.|++.+++.++++.+|+++|+++|+.++|.|||+|||+++++||.++++++++++.+. .++++
T Consensus 123 ~gaGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~~Dq~~s~~G~~~~~~~~d~~~~~~-~~~~~ 201 (382)
T PRK05101 123 QGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLIDCRSLET-KAVPM 201 (382)
T ss_pred CCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHcCCCCeEEEEEcCCCce-EEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988765 67888
Q ss_pred CCCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCC
Q 001939 722 PSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLS 801 (993)
Q Consensus 722 p~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~ 801 (993)
|.++.|+|+|||++|++..+.||.||.+|.. |++.+ ....|+++.
T Consensus 202 ~~~~~~vv~~sg~~~~l~~~~y~~r~~e~~~--------A~~~l---------------------------~~~~l~~~~ 246 (382)
T PRK05101 202 PEGVAVVIINSNVKRGLVDSEYNTRRQQCET--------AARFF---------------------------GVKALRDVT 246 (382)
T ss_pred CCCcEEEEEeCCCCccccccchhHHHHHHHH--------HHHHh---------------------------ChHhhhcCC
Confidence 8899999999999999888999999988732 21111 123456666
Q ss_pred hHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHH
Q 001939 802 PHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELL 881 (993)
Q Consensus 802 ~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm 881 (993)
++++.... ..+|+ .+++|+.|++.||.||.+++++|+++ |++.||+||
T Consensus 247 ~~~~~~~~-~~l~~---------------------------~~~~r~~h~i~E~~rv~~a~~al~~~----d~~~lG~Lm 294 (382)
T PRK05101 247 LEQFNAVA-AELDP---------------------------VVAKRARHVITENARTLEAASALAAG----DLKRMGELM 294 (382)
T ss_pred HHHHHHHH-hhCCH---------------------------HHHHHHHHHhHHHHHHHHHHHHHHcC----CHHHHHHHH
Confidence 55554421 22322 24678999999999999999999996 999999999
Q ss_pred HHhhhhhhh-cCCCCchHHHHHHHHHHHhhhccccCCCCcc-cceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhh
Q 001939 882 YQCHYSYSA-CGLGSDGTDRLVQLVQEIQHSKVSKSKDGTL-FGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDA 959 (993)
Q Consensus 882 ~~sH~slr~-~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~-~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~ 959 (993)
++||.+||+ ++||||++|.|+++|++. .|+ +||||||||||||++++.+.+. .+++++++.++|+++
T Consensus 295 ~~sh~~lr~~~~vS~~eld~lv~~a~~~----------~Ga~gGakltGaG~GG~~ial~~~~~-~~~~~~~~~~~y~~~ 363 (382)
T PRK05101 295 AESHASMRDDFEITVPQIDTLVEIVKAV----------IGDQGGVRMTGGGFGGCIVALVPEEL-VEAVRQAVAEQYEAK 363 (382)
T ss_pred HHHhHHHHhhcCCCCHhHHHHHHHHHhc----------cCCcceEEeccCCCccEEEEEEcHHH-HHHHHHHHHHHHHHh
Confidence 999999997 899999999999999972 376 5889999999999998876543 358999999999999
Q ss_pred cCCCCcEEee-cCCCCcc
Q 001939 960 TGYLPLIIEG-SSPGAGK 976 (993)
Q Consensus 960 ~g~~~~~~~~-~~~G~~~ 976 (993)
+|..|.+|.+ +++|+++
T Consensus 364 ~~~~~~~~~~~~~~Ga~~ 381 (382)
T PRK05101 364 TGLKETFYVCKASQGAGQ 381 (382)
T ss_pred hCCCCeEEEEecCCCccc
Confidence 9999999997 7999875
No 7
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=6.7e-60 Score=542.29 Aligned_cols=376 Identities=25% Similarity=0.357 Sum_probs=300.9
Q ss_pred HHHHhcCCCCCCceEEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEE
Q 001939 484 RKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQ 563 (993)
Q Consensus 484 ~~~~~~~f~~~~~~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~ 563 (993)
...|...||.+ |.++++|||||+|+|||+||+||+||++||++++++.+++++++.++
T Consensus 5 ~~~f~~~fg~~-p~~~~~APgrv~L~GeH~dy~g~~vl~~AI~~~~~v~~~~~~~~~i~--------------------- 62 (386)
T TIGR00131 5 QKIFASAFGAK-PDFTARAPGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVRDDKNVR--------------------- 62 (386)
T ss_pred HHHHHHHHCCC-CCEEEECCcceEeeccceeeCCceEEeeEeeccEEEEEEECCCCeEE---------------------
Confidence 44667788875 56889999999999999999999999999999999999998876543
Q ss_pred EEecccccCCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCC
Q 001939 564 IVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEG 643 (993)
Q Consensus 564 i~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g 643 (993)
+.+.+. ......+++++ |.. ......|.+|+++++..+.+ .+.....|+++.|.|+||+|
T Consensus 63 i~~~~~--~~~~~~~~~~~--------~~~---------~~~~~~w~~y~~~~~~~~~~-~~~~~~~g~~i~i~s~iP~g 122 (386)
T TIGR00131 63 IYLANA--DNKFAERSLDL--------PLD---------GSEVSDWANYFKGVLHVAQE-RFNSFPLGADIVCSGNVPTG 122 (386)
T ss_pred EEECCC--CCcceEEECCC--------CCC---------CCCCCCcHhHHHHHHHHHHH-hcCCCCCceEEEEECCCCCC
Confidence 333211 00001122221 110 12236899999999987664 34333359999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCC
Q 001939 644 KGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPS 723 (993)
Q Consensus 644 ~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~ 723 (993)
+|||||||++||++.|++.+++.++++++++++|+.+|++++|+|||+|||+++++||.+++++++|++.++ .++++|.
T Consensus 123 sGLgSSAA~~vA~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~~~~~~~-~~~~~~~ 201 (386)
T TIGR00131 123 SGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVECRSLKA-TPFKFPQ 201 (386)
T ss_pred CCcchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCccCCCcchHHHHHHHhccCCcEEEEEcCCCce-eeecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765 6788886
Q ss_pred -CeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCCh
Q 001939 724 -HIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSP 802 (993)
Q Consensus 724 -~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~ 802 (993)
++.|+|+|||++|+|++..||.||.+|..+.+++. .. ....+|++.+
T Consensus 202 ~~~~lvv~~s~~~~~t~~~~y~~r~~e~~~a~~~l~--------~~------------------------~~~~lr~~~~ 249 (386)
T TIGR00131 202 LGIAFVIANTNVKRTLAPSNYNTRRQECTTAANFLA--------AT------------------------DKGALRDFMN 249 (386)
T ss_pred CCeEEEEEeCCCccccccchhHHHHHHHHHHHHHhc--------cc------------------------cccchhhCCH
Confidence 89999999999999999999999988843322221 10 0123555555
Q ss_pred HHHHHH--HhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHH
Q 001939 803 HRFEAL--YAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGEL 880 (993)
Q Consensus 803 ~~~~~~--~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~L 880 (993)
+.+... ....+.+ .+++|++|+++|+.||.+++++|+++ |++.||++
T Consensus 250 ~~~~~~~~~~~~~~~---------------------------~~~~r~~h~v~e~~rv~~~~~al~~~----d~~~lG~l 298 (386)
T TIGR00131 250 EYFARYIARLTKMLP---------------------------LVEERAKHVVSENLRVLKAVKAMKDN----DFKQFGAL 298 (386)
T ss_pred HHHhhhHhhHhhcCH---------------------------HHHhhHheeehHHHHHHHHHHHHHhC----cHHHHHHH
Confidence 554321 0011111 14568999999999999999999986 99999999
Q ss_pred HHHhhhhhhh-cCCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhh
Q 001939 881 LYQCHYSYSA-CGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDA 959 (993)
Q Consensus 881 m~~sH~slr~-~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~ 959 (993)
|+++|.+|++ +++|||++|.+++.+.. .+|++||||||||||||+++|.+++. .+++++++.+.|+++
T Consensus 299 m~~sh~~l~~~~~vs~peld~lv~~a~~----------~~GAlGakltGaG~GG~vial~~~~~-~~~v~~~~~~~y~~~ 367 (386)
T TIGR00131 299 MNESHASCDDDYECTCPEIDELVCSAAL----------VNGSGGSRMTGAGFGGCTVHLVPNEN-VDKVRQAVADKYPKK 367 (386)
T ss_pred HHHhhHHHHHhcCCCCHHHHHHHHHHHh----------cCCCcEEEEecCCCceEEEEEEcHHH-HHHHHHHHHHHHHHh
Confidence 9999999998 69999999999988643 16999999999999999998876544 468999999999989
Q ss_pred cCCCCcEEee-cCCCCcc
Q 001939 960 TGYLPLIIEG-SSPGAGK 976 (993)
Q Consensus 960 ~g~~~~~~~~-~~~G~~~ 976 (993)
+|.++.+|++ +++|++.
T Consensus 368 ~~~~~~~~~~~~~~Ga~~ 385 (386)
T TIGR00131 368 TGLELTFYVIVSKPGAGS 385 (386)
T ss_pred hCCCCcEEEEEECCCcCC
Confidence 9999999997 6889875
No 8
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=4.9e-60 Score=536.06 Aligned_cols=355 Identities=26% Similarity=0.374 Sum_probs=291.2
Q ss_pred EEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 001939 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (993)
Q Consensus 498 ~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (993)
++++|||||||||||+|||||+|||+||+++++|++++++++++++ .|... + ..
T Consensus 3 ~~~~APGRv~LiGEH~dy~~g~vl~~Ai~~~~~v~~~~~~~~~i~i---------------------~s~~~---~--~~ 56 (363)
T PRK00555 3 VRYAAPGRINLIGEHTDYNLGFALPIALPQRTVVTFTPEHTDAITA---------------------SSDRA---D--GS 56 (363)
T ss_pred EEEEcCceEEeecccccCCCCeEEeEEeeccEEEEEEECCCCEEEE---------------------EECCC---C--Cc
Confidence 5689999999999999999999999999999999999998865443 33211 1 01
Q ss_pred eeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHH
Q 001939 578 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM 657 (993)
Q Consensus 578 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~ 657 (993)
++++++.. ......|.+|+++++..+ ++.+..+ .|+++.|.|+||+|+|||||||++||++
T Consensus 57 ~~~~~~~~-----------------~~~~~~w~~y~~gv~~~l-~~~g~~~-~g~~i~i~s~iP~g~GLgSSAA~~va~~ 117 (363)
T PRK00555 57 ARIPLDTT-----------------PGQVTGWAAYAAGVIWAL-RGAGHPV-PGGAMSITSDVEIGSGLSSSAALECAVL 117 (363)
T ss_pred eEEecCCC-----------------CCCCcchHHHHHHHHHHH-HHcCCCC-CCeEEEEecCCCCCCCccHHHHHHHHHH
Confidence 23332210 122367999999988864 5667665 6999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCC---CeEEEEEeCCC
Q 001939 658 SAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPS---HIRFWGIDSGI 734 (993)
Q Consensus 658 ~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~---~~~~ll~dSgv 734 (993)
.|++.++|.++++++++++|+++|+.++|+|||+|||+++++||.|++++++|++..+ .++++|. .+.|+++|||+
T Consensus 118 ~al~~~~~~~~~~~~la~~a~~aE~~~~G~~~G~~Dq~as~~G~~~~~~~~d~~~~~~-~~v~~~~~~~~~~lvv~~s~~ 196 (363)
T PRK00555 118 GAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQLAALFGAPKTALLIDFRDLTV-RPVAFDPDAAGVVLLLMDSRA 196 (363)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCChhHHHHHHhCCCCeEEEEEcCCCcE-EEeccCCCcCceEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999999999999987655 6787764 36799999999
Q ss_pred ccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCC
Q 001939 735 RHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIP 814 (993)
Q Consensus 735 ~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp 814 (993)
+|.+.+..||.||.+|... ++.+ ..+.++++.++.+... ....+
T Consensus 197 ~~~~~~~~y~~rr~~~~~~--------~~~~---------------------------~~~~lr~~~~~~~~~~-~~~~~ 240 (363)
T PRK00555 197 RHRHAGGEYAARRASCERA--------AADL---------------------------GVSSLRAVQDRGLAAL-GAIAD 240 (363)
T ss_pred cccccchhhHHHHHHHHHH--------HHHh---------------------------CccchhcCCHHHHHHH-HhcCC
Confidence 9999999999999887321 1111 1123455544443321 11110
Q ss_pred ccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhhhh-cCC
Q 001939 815 ESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSA-CGL 893 (993)
Q Consensus 815 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~slr~-~~v 893 (993)
+ ..++|++|+++|+.||.+++++|+++ |++.||++|+++|++||+ ++|
T Consensus 241 -----------------~----------~~~~r~~h~~~e~~~v~~~~~al~~g----d~~~lg~lm~~~h~~lr~~~~v 289 (363)
T PRK00555 241 -----------------P----------IDARRARHVLTENQRVLDFAAALADS----DFTAAGQLLTASHASMRDDFEI 289 (363)
T ss_pred -----------------h----------HHHHHHHHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHhhHHHHhhcCC
Confidence 0 24579999999999999999999996 999999999999999995 899
Q ss_pred CCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCcEEee-cCC
Q 001939 894 GSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG-SSP 972 (993)
Q Consensus 894 s~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~-~~~ 972 (993)
|+|++|.|++.+++ .|++|+||||||||||++++.+.+. .+++.+.+.++|+++++.+|.+|++ +++
T Consensus 290 S~~~ld~l~~~a~~-----------~Ga~GaklsGaG~Gg~vial~~~~~-~~~~~~~l~~~y~~~~~~~~~~~~~~~~~ 357 (363)
T PRK00555 290 TTERIDLIADSAVR-----------AGALGARMTGGGFGGCVIALVPADR-AEDVADTVRRAAVTAGYPEPAVSRTYAAP 357 (363)
T ss_pred CChhHHHHHHHHHh-----------cCCeEEEECCCCccCeEEEEEchhH-HHHHHHHHHHHHHHccCCCCcEEEEecCC
Confidence 99999999999987 6999999999999999998876543 3589999999999999999999998 799
Q ss_pred CCcce
Q 001939 973 GAGKF 977 (993)
Q Consensus 973 G~~~~ 977 (993)
|++.+
T Consensus 358 g~~~~ 362 (363)
T PRK00555 358 GAGEC 362 (363)
T ss_pred CcccC
Confidence 98864
No 9
>PRK03817 galactokinase; Provisional
Probab=100.00 E-value=4.7e-51 Score=463.88 Aligned_cols=347 Identities=28% Similarity=0.441 Sum_probs=280.8
Q ss_pred EEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCce
Q 001939 499 VARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTF 578 (993)
Q Consensus 499 ~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~ 578 (993)
.++|||||+|+|||+||+||+||++||+++++|.+++++. +.+.+.+ +.. .+
T Consensus 2 ~~~APgrv~L~Geh~d~~~g~~l~~aI~~~~~v~~~~~~~-----------------------~~i~~~~--~~~---~~ 53 (351)
T PRK03817 2 KVKSPGRVNLIGEHTDYNDGYVLPFAINLYTFLEIEKSEK-----------------------FIFYSEN--FNE---EK 53 (351)
T ss_pred EEEeeeeEEEeccceeeCCCeEEEEEecCcEEEEEEeCCe-----------------------EEEEECC--CCC---cE
Confidence 4789999999999999999999999999999999987632 2333321 110 12
Q ss_pred eccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHH
Q 001939 579 DMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 658 (993)
Q Consensus 579 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~ 658 (993)
++.++++ .....|.+|+.+++..+ ++.+... .|+++.|.|+||.++|||||||++||++.
T Consensus 54 ~~~~~~~------------------~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~i~i~s~iP~~~GLgSSaa~~va~~~ 113 (351)
T PRK03817 54 TFELDKL------------------EKLNSWADYIKGVIWVL-EKRGYEV-GGVKGKVSSNLPIGAGLSSSASLEVAVAY 113 (351)
T ss_pred EEeCCcc------------------CCCCchHHHHHHHHHHH-HHcCCCC-CCeEEEEeCCCCCCCCcCcHHHHHHHHHH
Confidence 2222221 12368999999998764 4556554 69999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCCCcccc
Q 001939 659 AIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738 (993)
Q Consensus 659 al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv~~~~ 738 (993)
|++.+++.++++.+++++|..+|++++|.|+|+|||+++++|+.+.++++++++..+ ..+++|.+++|++++||.+|.+
T Consensus 114 al~~~~~~~~~~~~l~~~a~~~E~~~~g~~~g~~D~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~vv~~sg~~~~~ 192 (351)
T PRK03817 114 ALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQFAVAFGKKDHAIFLDTMTLEY-EYVPFPEDYEILVFDTGVKREL 192 (351)
T ss_pred HHHHHhCCCCCHHHHHHHHHHhcccccCCCCcCchhhheeeccCCEEEEEecCCCce-EEEecCCCcEEEEEeCCCcccc
Confidence 999999999999999999999999999999999999999999988888899887554 5788888999999999999988
Q ss_pred CCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCccch
Q 001939 739 GGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIV 818 (993)
Q Consensus 739 ~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~ 818 (993)
.+..||.+|..|...++ .+. ...+++++.+++ ..+|+
T Consensus 193 ~~~~~~~~~~~~~~~~~--------~l~---------------------------~~~~~~~~~~~~-----~~l~~--- 229 (351)
T PRK03817 193 ASSEYNERRQECEEALK--------ILG---------------------------KKSSKEVTEEDL-----SKLPP--- 229 (351)
T ss_pred ccchhHHHHHHHHHHHH--------HhC---------------------------ccchhcCCHHHH-----HhCCH---
Confidence 88899988876532111 110 012233322221 12332
Q ss_pred hhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhhhh-cCCCCch
Q 001939 819 GEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSA-CGLGSDG 897 (993)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~slr~-~~vs~~~ 897 (993)
.+++|+.|+++|+.|+..++.+|+++ |++.||++|++||.++++ +++|+|+
T Consensus 230 ------------------------~~~~~~~~~v~e~~r~~~~~~al~~~----d~~~lg~l~~~s~~~l~~~~~~s~p~ 281 (351)
T PRK03817 230 ------------------------LLRKRAGYVLRENERVLKVRDALKEG----DIETLGELLTESHWDLADNYEVSCEE 281 (351)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHhhcCCCcHH
Confidence 14568999999999999999999996 999999999999999998 8999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCcEEee-cCCCCcc
Q 001939 898 TDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG-SSPGAGK 976 (993)
Q Consensus 898 lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~-~~~G~~~ 976 (993)
+|+|++.+++ .|++|+|||||||||||+++.++.. .+++++.+++.|.+.+++.+.+|.. +++|+++
T Consensus 282 ld~l~~~a~~-----------~GalGaklsGaG~Gg~vlal~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 349 (351)
T PRK03817 282 LDFFVEFALE-----------LGAYGARLTGAGFGGSAIALVDKGK-FESIGEELLEEYKKRFGIDPKYFVVESSDGVRK 349 (351)
T ss_pred HHHHHHHHHH-----------cCCCEEEEecCCCCeEEEEEEchHH-HHHHHHHHHHHHHHhcCCCCcEEEEecCCCcee
Confidence 9999999998 6999999999999999998865443 3589999999999899999999987 5688875
Q ss_pred e
Q 001939 977 F 977 (993)
Q Consensus 977 ~ 977 (993)
+
T Consensus 350 ~ 350 (351)
T PRK03817 350 I 350 (351)
T ss_pred C
Confidence 3
No 10
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6e-48 Score=424.65 Aligned_cols=405 Identities=23% Similarity=0.302 Sum_probs=282.2
Q ss_pred HHhcCCCCCCceEEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEE
Q 001939 486 AAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIV 565 (993)
Q Consensus 486 ~~~~~f~~~~~~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~ 565 (993)
++...|+. .|.+++++||||||+|||+||+|+.|+|||||..+.+++.+++|.. +.+++.
T Consensus 29 ~~~~~~~~-kp~~~a~~PgRVnLiGEHiDy~~~sVlpmaid~~~l~~~~~~~d~~-------------------~sl~~t 88 (489)
T KOG0631|consen 29 AFQAAYGA-KPVFVARAPGRVNLIGEHIDYCGYSVLPMAIDVDTLIAVAPSDDGI-------------------VSLRLT 88 (489)
T ss_pred HHHHhhCC-CceEEEecCCceecccceeeecCceeeeEEeeeeeEEEEEEcCCCc-------------------eeEEEe
Confidence 44458885 5678999999999999999999999999999999999999999864 345666
Q ss_pred ecccccCCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHh---CCCCCC--CEEEEEEeCC
Q 001939 566 SYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTEL---GVRFED--SISMLVSSAV 640 (993)
Q Consensus 566 s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~---g~~~~~--g~~i~i~s~i 640 (993)
+++++|. .+++++...- +.+ ....++|.||+++.+..+.+.. +..... |+.+...+++
T Consensus 89 N~~~~f~----~~~~~~p~~~-----~~I--------~~~~~~w~ny~~C~~~g~h~~~~~~~~~~~~~vGl~~l~~g~v 151 (489)
T KOG0631|consen 89 NFNPDFI----YFKYPLPSIV-----WQI--------DPDVSKWENYFYCGMKGFHEYIKRKPVRFEPPVGLSILNDGSV 151 (489)
T ss_pred cCCCccc----eeeccCCchh-----ccc--------CCCccchhhhhccchHHHHHHHhccccccCCCcceEEEecCCC
Confidence 6655542 2333332100 011 1224789999966655544333 333334 9999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHh-CCC--CCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEe--ecCccc
Q 001939 641 PEGKGVSSSASVEVASMSAIAAAH-GLN--IHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV--CQPAEL 715 (993)
Q Consensus 641 P~g~GLgSSAA~~Va~~~al~~~~-g~~--l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~--~~~~~~ 715 (993)
|.|+||+||||+.++.+.|...+. |.+ +.++++..++..+|. +.|.++|+|||+++++|..+++++++ +.|...
T Consensus 152 PtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~~~ae~-~~G~~~gGmdq~asvl~~~~~Al~v~~~~~Pf~~ 230 (489)
T KOG0631|consen 152 PTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATITVVAES-YIGLNSGGMDQAASVLAEKGHALLVDPYFTPFRR 230 (489)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcceEEeec-ccCcCCCcHHHHHHHHHhcCceEEecccCCcccc
Confidence 999999999999999999999888 887 789999999998885 68999999999999999999999999 447655
Q ss_pred eeeecCCCCeEEEEEeCCCccc---cCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCC---------CCCCCccch
Q 001939 716 LGVVEIPSHIRFWGIDSGIRHS---VGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNG---------LNNIEPEVD 783 (993)
Q Consensus 716 ~~~v~~p~~~~~ll~dSgv~~~---~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~---------~~~~~~~~~ 783 (993)
..++++..-.|+|.+|.+... ++.+.||.|..++ .+++..+++++..... ..++.-..+
T Consensus 231 -~~lk~~~~~vfvI~~~L~~~nk~~~a~tnynlRv~E~--------~ia~~~la~k~~~~~~~~~~~~~~~~~~~~~i~~ 301 (489)
T KOG0631|consen 231 -SMLKLPDGGVFVIANSLVESNKAETAETNYNLRVVEG--------TIAAGELAAKILVELPAYILRYQLQRAWRGDIGE 301 (489)
T ss_pred -ccccCCCCceEEEechhhhhcchhhhhhhhhceeEee--------ehhhHHHHHHhhcccHHHHHhhhhhhccccccch
Confidence 577777667999999988764 5668999875544 2233333322211000 000000011
Q ss_pred hhHHHHHhh--hhhHhh--cCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHH
Q 001939 784 GVELLEAEA--SLDYLC--NLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVK 859 (993)
Q Consensus 784 ~~~~l~~~~--~~~~L~--~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~ 859 (993)
+++.+.... ..+++. ..+.++.... | ..+-++|++.+.+.+. ++ .+++++++|++|++.|+.||.
T Consensus 302 ~~~~~~~~l~~v~~~~~~e~f~~ee~~~~----l--~~~~~~f~~~~~T~~~----v~-~~~~k~~~rakHv~sea~rv~ 370 (489)
T KOG0631|consen 302 GYERAEEMLGLVEESLKPEGFNIEEVARA----L--GLDTEEFLQSLLTLAA----VD-LQVKKLYQRAKHVYSEALRVL 370 (489)
T ss_pred hHHHHHHHHHHHHhhcCcCCCCHHHHHHH----h--ccchHHHHHHhccccc----hh-hHHHHHHHHHHHHHHHHHHHH
Confidence 111100000 000000 0111111110 0 1123345555544221 11 234467889999999999999
Q ss_pred HHHHHHHccCChhH--HHHHHHHHHHhhhhhhh-cCCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEE
Q 001939 860 AFKALLTAAASDDQ--LTSLGELLYQCHYSYSA-CGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTIC 936 (993)
Q Consensus 860 ~~~~al~~~~~~~~--l~~lG~Lm~~sH~slr~-~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi 936 (993)
++..++.+...+.| +..||+|||+||.||+. +++||||+|+|+++|++ +|.+|+||||||||||.+
T Consensus 371 q~~~~~~~a~~~~d~~~~~~g~LmneS~~Sc~~~yEcscpel~qL~kiala-----------~g~~gaRlTGaGwGGc~v 439 (489)
T KOG0631|consen 371 QEEKLCARAPGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALA-----------NGGVGARLTGAGWGGCTV 439 (489)
T ss_pred HHHHHHhcCccchhhhHHHHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHh-----------cCCccceeecccccccee
Confidence 99999988754433 88999999999999999 69999999999999998 677999999999999998
Q ss_pred EEccCCcccHHHHHHHHHHHHhhc
Q 001939 937 VIGRNSLRSSEQVLEIQQRYKDAT 960 (993)
Q Consensus 937 ~l~~~~~~~~~~~~~i~~~y~~~~ 960 (993)
.+.+.+. .+.+.+.+++.|+++.
T Consensus 440 ~lvp~d~-~~~~~~~~~~~~Y~ka 462 (489)
T KOG0631|consen 440 ALVPADL-VDFAVAALKEIYYEKA 462 (489)
T ss_pred eeccccc-hHHHHHhhhhhhhccc
Confidence 7776332 3578888888877554
No 11
>PLN02677 mevalonate kinase
Probab=100.00 E-value=6.2e-42 Score=386.58 Aligned_cols=336 Identities=19% Similarity=0.290 Sum_probs=223.7
Q ss_pred EEEEcCcccccccccccccCCeeeccccccceEEEEEecCc----chhhhhhhhhhccCCCCCCCCCeEEEEecccccCC
Q 001939 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISP----SKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 573 (993)
Q Consensus 498 ~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 573 (993)
+.++|||||+|+|||+||+|++|+++||++++|+.+++++. +.+.+. +|++.+
T Consensus 3 i~v~apgk~~l~Geh~~~~g~~a~~~ai~~~~~~~~~~~~~~~~~~~i~~~--------------~~di~~--------- 59 (387)
T PLN02677 3 VKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVSLRFPPSAENDDTLKLQ--------------LKDLGL--------- 59 (387)
T ss_pred eEEeCCccEEEeeeeeeecCCeeeeeEeeceEEEEEEecCCCCCCCeEEEE--------------cCCCCc---------
Confidence 57899999999999999999999999999999999998632 111110 122211
Q ss_pred CCCceeccCCccccC---------CCCcchH-----hhhcccCC--CCC-CChH-HHHHHHHHHHHHHhCCCCCCCEEEE
Q 001939 574 RGPTFDMDLSDFMDE---------GKPMSYE-----KAKKYFDT--NPS-QKWA-AYVAGTILVLMTELGVRFEDSISML 635 (993)
Q Consensus 574 ~~~~~~~~l~~~~~~---------~~~~~~~-----~~~~~~~~--~~~-~~W~-~yv~~~i~~~~~~~g~~~~~g~~i~ 635 (993)
.++|+++++... ..+..+. ....|... .+. ..|. +.+.+ +.+++...- .. .++++.
T Consensus 60 ---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~-flyl~~~~~-~~-~~~~i~ 133 (387)
T PLN02677 60 ---EFSWPLARIKEALPDLGTPCPSTPTSCSEETLKSIAALVEEQNIPEAKIWLSSGVSA-FLWLYTSIL-GF-NPATVV 133 (387)
T ss_pred ---eEEechHhhhhhhccccccccccccccCHHHHHHHHHHHHhcCCcchhhhhhhHHHH-HHHHHHHhc-cC-CCeEEE
Confidence 233333322100 0111111 01122211 010 1111 11111 111211111 12 579999
Q ss_pred EEeCCCCCCCCchHHHHHHHHHHHHHHHhCC-CC-------------CHHHHHHHHHHHhccccCCCCCcchhhHhhccc
Q 001939 636 VSSAVPEGKGVSSSASVEVASMSAIAAAHGL-NI-------------HPRDLALLCQKVENHIVGAPCGVMDQMASACGE 701 (993)
Q Consensus 636 i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~-~l-------------~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg 701 (993)
|+|+||+|+|||||||++||++.||+.+++. ++ +.+++.++|+.+|+.+||+|||+ |+++++|||
T Consensus 134 I~S~lP~GaGLGSSAAv~Va~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGi-D~a~s~~Gg 212 (387)
T PLN02677 134 VTSELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGI-DNTVSTYGN 212 (387)
T ss_pred EEccCCCCCCccHHHHHHHHHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCch-hHHHHhcCC
Confidence 9999999999999999999999999999983 22 23588899999999999999996 999999999
Q ss_pred cceEEEEeecCccceeeecCCCCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCcc
Q 001939 702 ANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPE 781 (993)
Q Consensus 702 ~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~ 781 (993)
++. |+.... ++++.+.+++|+|+|||++|+|+ ++|..++.
T Consensus 213 ---~I~--f~~~~~-~~l~~~~~l~llv~dTgv~~sT~---------------~lV~~V~~------------------- 252 (387)
T PLN02677 213 ---MIK--FKSGEL-TRLQSNMPLKMLITNTRVGRNTK---------------ALVAGVSE------------------- 252 (387)
T ss_pred ---eEE--EcCCCc-eecCCCCCceEEEEECCCCCcHH---------------HHHHHHHH-------------------
Confidence 334 444343 56676678999999999999985 35554431
Q ss_pred chhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHH
Q 001939 782 VDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAF 861 (993)
Q Consensus 782 ~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~ 861 (993)
+++-.|+.++.. .+.+.++ +.++
T Consensus 253 ---------------~~~~~p~~~~~i------------------------------------l~~~~~i------~~~a 275 (387)
T PLN02677 253 ---------------RALRHPDAMKSV------------------------------------FNAVDSI------SEEL 275 (387)
T ss_pred ---------------HHHhCHHHHHHH------------------------------------HHHHHHH------HHHH
Confidence 111111111111 0111122 5567
Q ss_pred HHHHHccCC-----hhHHHHHHHHHHHhhhhhhhcCCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEE
Q 001939 862 KALLTAAAS-----DDQLTSLGELLYQCHYSYSACGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTIC 936 (993)
Q Consensus 862 ~~al~~~~~-----~~~l~~lG~Lm~~sH~slr~~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi 936 (993)
.++|++... ++|++.||++|+.+|..|+.+|||+|.+|.+|+++++ .| +|||+||||+|||+|
T Consensus 276 ~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~~LGVS~~~le~iv~~a~~-----------~~-~~AKlTGAGgGGC~I 343 (387)
T PLN02677 276 ATIIQSPAEDELSITEKEEKLKELMEMNQGLLQCMGVSHSSIETVLRTTLK-----------YK-LVSKLTGAGGGGCVL 343 (387)
T ss_pred HHHHhccccccccccchHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-----------cC-CccccccCCCCCEEE
Confidence 777776211 1479999999999999999999999999999999987 45 799999999999999
Q ss_pred EEccCCcccHHHHHHHHHHHHhhcCCCCcEEee--cCCCCcc
Q 001939 937 VIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG--SSPGAGK 976 (993)
Q Consensus 937 ~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~--~~~G~~~ 976 (993)
+|.++..+ ++.++++.+++++. |++ .|+. ..+|+++
T Consensus 344 aL~~~~~~-~~~~~~l~~~l~~~-G~~--~~~~~~g~~Gv~~ 381 (387)
T PLN02677 344 TLLPTLLS-GTVVDKVIAELESS-GFQ--CFTAGIGGNGVQI 381 (387)
T ss_pred EEcccccc-hhHHHHHHHHHHHC-CCe--EEEEEeCCCceEE
Confidence 88765443 35667888888744 664 4554 4666654
No 12
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=100.00 E-value=6.8e-41 Score=368.68 Aligned_cols=273 Identities=26% Similarity=0.322 Sum_probs=208.2
Q ss_pred cCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCceecc
Q 001939 502 APGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMD 581 (993)
Q Consensus 502 APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~~~~ 581 (993)
|||||+|+|||+||+|++||++|||+++++.+++++++ ++ +.+.. +..+
T Consensus 1 aPgkv~L~GEH~v~~g~~al~~aI~~~~~~~~~~~~~~-~~---------------------i~~~~---------~~~~ 49 (273)
T TIGR00549 1 APGKIILFGEHAVVYGEPAIAAPIPLRTTVTVIESSDG-SF---------------------IESDL---------GRGS 49 (273)
T ss_pred CCceEEEEecChhccCCCeeEEEecccEEEEEEEcCCC-ce---------------------Eeccc---------cCCc
Confidence 79999999999999999999999999999999987654 21 22110 1001
Q ss_pred CCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHH
Q 001939 582 LSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIA 661 (993)
Q Consensus 582 l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~ 661 (993)
...+ ......|.+|+++++..+. ..+ . .++++.+.|+||.|+|||||||++||++.|++
T Consensus 50 ~~~~-----------------~~~~~~~~~~v~~~l~~~~-~~~--~-~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~ 108 (273)
T TIGR00549 50 LDDA-----------------PQELDGLVSYIAEALSYFS-ELN--P-PPLEIEIDSEIPPGRGLGSSAAVAVALIRALA 108 (273)
T ss_pred HhHh-----------------hHHHHHHHHHHHHHHHHhh-ccC--C-CCEEEEEecCCCCCCCccHHHHHHHHHHHHHH
Confidence 0000 1123579999999887653 222 1 35999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCCCccccCCC
Q 001939 662 AAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVGGA 741 (993)
Q Consensus 662 ~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv~~~~~~~ 741 (993)
.+++.++++++++++|+.+|+.++|.||| +||+++++||. ++++++... ..+..+.++.+++++||++++|..
T Consensus 109 ~~~~~~~~~~~l~~~a~~~E~~~~G~~sG-~D~~~~~~Gg~---~~~~~~~~~--~~~~~~~~~~lvl~~tg~~~~T~~- 181 (273)
T TIGR00549 109 DYFGSELSKEELAKLANEAEKIAHGKPSG-IDTATSTYGGP---VYFEKGEGE--FTKLISLDGYFVIADTGVSGSTKE- 181 (273)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhCCCCch-HhHHHHhcCCe---EEEEcCCCc--eeeccCCCeEEEEEECCCCCcHHH-
Confidence 99999999999999999999999999999 59999999994 556654321 234445568999999999988742
Q ss_pred CccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCccchhhh
Q 001939 742 DYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEE 821 (993)
Q Consensus 742 ~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~ 821 (993)
+++.+. .+++..++.++..
T Consensus 182 --------------~~~~v~----------------------------------~~~~~~~~~~~~~------------- 200 (273)
T TIGR00549 182 --------------AVARVR----------------------------------QLLERFPELIDSI------------- 200 (273)
T ss_pred --------------HHHHHH----------------------------------HHHHhCHHHHHHH-------------
Confidence 111110 0111111111110
Q ss_pred hhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhhhhcCCCCchHHHH
Q 001939 822 FSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSACGLGSDGTDRL 901 (993)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~slr~~~vs~~~lD~l 901 (993)
.+++ ..++.+++.+|+++ |++.||++|+++|..++++++++|++|+|
T Consensus 201 -----------------------~~~~------~~~~~~~~~al~~~----d~~~lg~l~~~~~~~l~~~~vs~p~l~~l 247 (273)
T TIGR00549 201 -----------------------MDAI------GELTLEAKAALQDG----DVESLGELMNINQGLLKALGVSHPKLDQL 247 (273)
T ss_pred -----------------------HHHH------HHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 0011 13678889999886 99999999999999999999999999999
Q ss_pred HHHHHHHhhhccccCCCCcccceeeeccccCceEEEE
Q 001939 902 VQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVI 938 (993)
Q Consensus 902 v~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l 938 (993)
++.+++ .|++|+||||||+|||+++|
T Consensus 248 ~~~~~~-----------~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 248 VETARK-----------AGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred HHHHHH-----------CCCceeeeccCCCCceEEeC
Confidence 999988 68999999999999999864
No 13
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=100.00 E-value=1.2e-39 Score=353.75 Aligned_cols=292 Identities=27% Similarity=0.363 Sum_probs=218.5
Q ss_pred EEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCce
Q 001939 499 VARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTF 578 (993)
Q Consensus 499 ~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~ 578 (993)
.++||||++|+|||+++||.+++++||++++++.++.+++.++. +.+.+ +
T Consensus 2 ~~~aPgKliL~GEHAVVyG~pAI~~aI~~~~~v~~~~s~~~~~~---------------------i~~~~--~------- 51 (307)
T COG1577 2 SVSAPGKLILFGEHAVVYGYPAIAAAIDLRVTVTISESDSNKIV---------------------IESSD--L------- 51 (307)
T ss_pred cccccccEEEEecceeeeCCchhheeeeeeEEEEEEecCCCcEE---------------------EeccC--C-------
Confidence 47899999999999999999999999999999999998765432 22210 0
Q ss_pred eccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHH
Q 001939 579 DMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 658 (993)
Q Consensus 579 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~ 658 (993)
..+.+ . .+.. ..|+..++..+.+..+.....+|++.|.|+||+|+|||||||+.||++.
T Consensus 52 --~~~~~-------~---------~~~~---~~~~~~~v~~~~e~~~~~~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~ 110 (307)
T COG1577 52 --KSSTL-------E---------RDED---EGYIQAAVRLASELLNQSSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIK 110 (307)
T ss_pred --CCccc-------c---------cccc---chHHHHHHHHHHHHhcccCCCCeEEEEecCCCCCCCccHHHHHHHHHHH
Confidence 00000 0 0000 1666666665443333222369999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCCCcccc
Q 001939 659 AIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738 (993)
Q Consensus 659 al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv~~~~ 738 (993)
|++.++|.+++++++++++.++|..+||+||| +|.+++++|| .+++... ... +.+.++..-.|+|.|+|++++|
T Consensus 111 al~~~~g~~ls~~~l~~la~~~e~~vqG~~Sg-~D~a~~~~gg---~v~~~~~-~~~-~~l~~~~~~~~~I~~tg~~~sT 184 (307)
T COG1577 111 ALSAYFGVELSPEELAKLANKVELIVQGKASG-IDIATITYGG---LVAFKKG-FDF-EKLEIELLGTLVIGDTGVPGST 184 (307)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHcCCCCc-ccceEEEeCC---EEEEecC-CCc-cccccccCCeEEEEEcCCcCcH
Confidence 99999999999999999999999999999999 6999999999 4666532 122 4555553337999999999987
Q ss_pred CCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCccch
Q 001939 739 GGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIV 818 (993)
Q Consensus 739 ~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~ 818 (993)
. ++|..++ .+++ ..|+.+
T Consensus 185 ~---------------e~V~~V~----------------------------------~l~~------------~~~~~~- 202 (307)
T COG1577 185 K---------------ELVAGVA----------------------------------KLLE------------EEPEVI- 202 (307)
T ss_pred H---------------HHHHHHH----------------------------------HHHH------------hhhHHH-
Confidence 4 2444332 0110 111111
Q ss_pred hhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhhhhcCCCCchH
Q 001939 819 GEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSACGLGSDGT 898 (993)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~slr~~~vs~~~l 898 (993)
....+.+.+ -+.++..++..+ |.+.||++|+.+|..|..+|||+|++
T Consensus 203 ---------------------------~~~~~~ig~--~~~~a~~al~~~----d~e~lgelm~~nq~LL~~LgVs~~~L 249 (307)
T COG1577 203 ---------------------------DPILDAIGE--LVQEAEAALQTG----DFEELGELMNINQGLLKALGVSTPEL 249 (307)
T ss_pred ---------------------------HHHHHHHHH--HHHHHHHHHhcc----cHHHHHHHHHHHHHHHHhcCcCcHHH
Confidence 011222222 266788888885 99999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHH
Q 001939 899 DRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYK 957 (993)
Q Consensus 899 D~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~ 957 (993)
|+||+.+++ .|++|||+||||+|||+|+|.++.. ..+.+..+.+
T Consensus 250 ~~lv~~a~~-----------~Ga~gaKlTGAGgGGc~IaL~~~~~----~~~~l~~~~~ 293 (307)
T COG1577 250 DELVEAARS-----------LGALGAKLTGAGGGGCIIALAKNEE----IAETLSNRLE 293 (307)
T ss_pred HHHHHHHHh-----------cCccccccccCCCCceEEEEeccch----HHHHHHHHHH
Confidence 999999998 6999999999999999999987622 2456666655
No 14
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=100.00 E-value=5.8e-39 Score=363.78 Aligned_cols=315 Identities=19% Similarity=0.215 Sum_probs=228.4
Q ss_pred EEEcCccccccccccccc-CCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 001939 499 VARAPGRLDVMGGIADYS-GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (993)
Q Consensus 499 ~~~APGRv~L~GeH~dy~-gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (993)
.++|||||+|+|||+||+ |.+||++||++++++.++++++..+ .|.+.. +... .
T Consensus 2 ~~~APGKl~L~GEhavv~~G~pAl~~aI~~~~~v~i~~~~~~~~---------------------~i~s~~--~~~~--~ 56 (358)
T TIGR01220 2 VVHAPGKLFVAGEYAVVEPGNPAILVAVDRFVTVTVEDADGAAD---------------------VIISSD--LGPQ--P 56 (358)
T ss_pred eeecceeEEEeeeEEEecCCCeEEEEEEcCcEEEEEEeCCCCce---------------------EEEecC--CCCC--c
Confidence 578999999999999999 7789999999999999999876533 233221 1110 1
Q ss_pred eeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHH---HhCCCCCCCEEEEEEeCCCCC----CCCchHH
Q 001939 578 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMT---ELGVRFEDSISMLVSSAVPEG----KGVSSSA 650 (993)
Q Consensus 578 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~---~~g~~~~~g~~i~i~s~iP~g----~GLgSSA 650 (993)
+.+..++. .+.. .......|.+|+++++..+.+ ..+... +|+++.|.|+||++ +||||||
T Consensus 57 ~~~~~~~~-----~~~~-------~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~-~g~~~~i~s~ip~~~g~k~GLGSSA 123 (358)
T TIGR01220 57 VGWRRHDG-----RLVV-------RDPDARSALAYVVSAIETVERYAGERNQKL-PALHLSVSSRLDEADGRKYGLGSSG 123 (358)
T ss_pred eEEEecCC-----ceee-------cccccccchHHHHHHHHHHHHHHHhcCCCC-CceEEEEecCCCCcCCCCCCccHHH
Confidence 12221110 0000 001124799999999875533 334544 68999999999994 6999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEe-ec------------------
Q 001939 651 SVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV-CQ------------------ 711 (993)
Q Consensus 651 A~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~-~~------------------ 711 (993)
|++||++.|++.+++.++++++++++|+.+|+.+||.++|. |+++++|||. +.+. +.
T Consensus 124 A~~Va~~~Al~~~~~~~l~~~~l~~lA~~~E~~~~g~~sg~-D~~a~~~GG~---i~~~~~~~~~~~~~~~~~~~~~~~~ 199 (358)
T TIGR01220 124 AVTVATVKALNAFYDLELSNDEIFKLAMLATAELQPKGSCG-DIAASTYGGW---IAYSTFDHDWVLQLARRVGVDRTLK 199 (358)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhCCCCCcc-hhhhhhhCCE---EEEecCCHHHHhhhhhccchhhhhc
Confidence 99999999999999999999999999999999999999884 9999999994 3332 11
Q ss_pred ----CccceeeecCCCCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHH
Q 001939 712 ----PAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVEL 787 (993)
Q Consensus 712 ----~~~~~~~v~~p~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 787 (993)
+..+ +++++|++++|+++|||++++|. ++++.+...
T Consensus 200 ~~w~~~~~-~~l~~~~~~~l~v~~tg~~~~T~---------------~~v~~V~~~------------------------ 239 (358)
T TIGR01220 200 APWPGLSI-RPLPAPKGLTLLIGWTGSPASTA---------------SLVSDVHRR------------------------ 239 (358)
T ss_pred cCCCccce-eECCCCCCCEEEEEeCCCCcCcH---------------HHHHHHHHH------------------------
Confidence 1112 56677778999999999999864 234333210
Q ss_pred HHHhhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHc
Q 001939 788 LEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTA 867 (993)
Q Consensus 788 l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~ 867 (993)
+.-.++.++.. .+++. .-+.+++++|++
T Consensus 240 ----------~~~~~~~~~~~------------------------------------l~~~~------~i~~~~~~al~~ 267 (358)
T TIGR01220 240 ----------KWRGSASYQRF------------------------------------LETST------DCVESAITAFET 267 (358)
T ss_pred ----------hhcChHHHHHH------------------------------------HHHHH------HHHHHHHHHHHh
Confidence 00001111110 00111 125678889988
Q ss_pred cCChhHHHHHHHHHHHhhhhhhhc------CCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccC
Q 001939 868 AASDDQLTSLGELLYQCHYSYSAC------GLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRN 941 (993)
Q Consensus 868 ~~~~~~l~~lG~Lm~~sH~slr~~------~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~ 941 (993)
+ |++.||++|+++|..|+.+ +||+|++|+|++.+++ .|+ |||+||||+|||++++.++
T Consensus 268 ~----d~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~-----------~ga-~aKlsGAGgGg~~ial~~~ 331 (358)
T TIGR01220 268 G----DITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEA-----------YGG-AAKPSGAGGGDCGIAILDA 331 (358)
T ss_pred C----CHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhh-----------cCc-eecCCCCCCcCEEEEEeCC
Confidence 6 9999999999999999987 9999999999999987 676 9999999999999988876
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCcEEe
Q 001939 942 SLRSSEQVLEIQQRYKDATGYLPLIIE 968 (993)
Q Consensus 942 ~~~~~~~~~~i~~~y~~~~g~~~~~~~ 968 (993)
..+ .+.+.++.+ +.|+.|.-..
T Consensus 332 ~~~----~~~~~~~~~-~~G~~~l~~~ 353 (358)
T TIGR01220 332 EAD----ITHVRQRWE-TAGILPLPLT 353 (358)
T ss_pred chh----HHHHHHHHH-HCCCeEeeee
Confidence 443 466777776 6687775443
No 15
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=342.78 Aligned_cols=338 Identities=20% Similarity=0.286 Sum_probs=222.0
Q ss_pred EEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 001939 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (993)
Q Consensus 498 ~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (993)
+.++|||||+|+|||+++||.++++++|++++|+.+++..++++.+. +|++.+.
T Consensus 5 l~vsaPGKvILfGEHAVVyg~~AlAaai~LrTyl~l~~san~~i~l~--------------l~di~~~------------ 58 (397)
T KOG1511|consen 5 LLVSAPGKVILFGEHAVVYGRTALAAAIDLRTYLRLQTSANDRILLQ--------------LPDISIE------------ 58 (397)
T ss_pred eeecCCccEEEeccceeEECCceeEEEeecceeEEEEecCCCeEEEe--------------cccCCce------------
Confidence 47899999999999999999999999999999999988876654332 2333332
Q ss_pred eeccCCccccC-----------CCCc---chHhhhcc---cCCCCCCChHHHHHHHHHHHHHHhCCCC---CCCEEEEEE
Q 001939 578 FDMDLSDFMDE-----------GKPM---SYEKAKKY---FDTNPSQKWAAYVAGTILVLMTELGVRF---EDSISMLVS 637 (993)
Q Consensus 578 ~~~~l~~~~~~-----------~~~~---~~~~~~~~---~~~~~~~~W~~yv~~~i~~~~~~~g~~~---~~g~~i~i~ 637 (993)
+.|++.+|... ..|. ..+..+.+ ........-.--+...+.-++ -.-... .+.+++.|+
T Consensus 59 ~~w~l~~~~~~l~~~~~~~~~~q~p~~~~~~e~~k~l~~l~~~~~~~~~~~a~~~~lYlf~-~l~~~~~g~lp~~~v~v~ 137 (397)
T KOG1511|consen 59 KAWSLADFNGALPEQRSTYESVQTPASEVRVELLKQLGGLLENQEKVKEHLAGLSFLYLFL-GLCLRAPGTLPALTVVVD 137 (397)
T ss_pred EEEEhhhhhhhhhhhhhhhhccCCcchhhhHHHHHHhhhhhhcchhhhHHHHHHHHHHHHH-HhhhcccCCCcceEEEEe
Confidence 34444442210 0111 01111111 111111110111111111111 111111 134999999
Q ss_pred eCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCH-----------HHHHHHHHHHhccccCCCCCcchhhHhhccccceEE
Q 001939 638 SAVPEGKGVSSSASVEVASMSAIAAAHGLNIHP-----------RDLALLCQKVENHIVGAPCGVMDQMASACGEANKLL 706 (993)
Q Consensus 638 s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~-----------~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~ 706 (993)
|++|+|+|||||||++||++++++.++|.--++ +=+.+||+..|+.+||+|||+ |+++|+|||. +
T Consensus 138 SelP~GaGLGSSAa~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGi-DnaV~t~Gg~---i 213 (397)
T KOG1511|consen 138 SELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGI-DNAVCTYGGL---I 213 (397)
T ss_pred ccCCCcCCcchhHHHHHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCccc-chhhhccCce---E
Confidence 999999999999999999999999988863222 346789999999999999996 9999999994 3
Q ss_pred EEeecCc-cceeeecCCCCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhh
Q 001939 707 AMVCQPA-ELLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGV 785 (993)
Q Consensus 707 ~i~~~~~-~~~~~v~~p~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 785 (993)
.|+.. ++ +.+...+.++++++||.++|+|+. +|+.+.
T Consensus 214 --~f~kg~~~-~~Lk~~~~L~illtnTrv~RnTk~---------------lVa~Vr------------------------ 251 (397)
T KOG1511|consen 214 --SFKKGVEI-ESLKHLPPLRILLTNTRVPRNTKA---------------LVAGVR------------------------ 251 (397)
T ss_pred --EeecCccc-eecccCCCceEEEEccccCccHHH---------------HHHHHH------------------------
Confidence 34433 33 555555689999999999999852 343321
Q ss_pred HHHHHhhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHH
Q 001939 786 ELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALL 865 (993)
Q Consensus 786 ~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al 865 (993)
.+. ...|+.|. .+...+.|. ..++..++
T Consensus 252 ----------~~~------------~kfPevi~----------------------------~i~~aid~i--s~ea~~il 279 (397)
T KOG1511|consen 252 ----------ELL------------EKFPEVIK----------------------------AIFDAIDEI--SLEAVWIL 279 (397)
T ss_pred ----------HHH------------HhhhHHHH----------------------------HHHHHHHHH--HHHHHHHH
Confidence 111 12333220 111122222 34555566
Q ss_pred HccCChhHH--H-HHHHHHHHhhhhhhhcCCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCC
Q 001939 866 TAAASDDQL--T-SLGELLYQCHYSYSACGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNS 942 (993)
Q Consensus 866 ~~~~~~~~l--~-~lG~Lm~~sH~slr~~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~ 942 (993)
.+.+.+... + +|.+||..||..|..+|||+|.+|.++..+++ .| +++||||||+|||++.+.+.+
T Consensus 280 ~~e~~~~~~~~Eq~L~eLi~iNq~LL~alGVsH~~le~v~~~t~k-----------~g-i~sKLTGAGgGGc~itlL~~~ 347 (397)
T KOG1511|consen 280 QRENDEFSSPKEQKLEELIRINQDLLDALGVSHPSLELVCTTTRK-----------LG-IHSKLTGAGGGGCVITLLKPG 347 (397)
T ss_pred hcccccCCCcHHHHHHHHHHHhHHHHHHhCCCcHHHHHHHHHHHH-----------hC-cceecccCCCCceEEEEECCC
Confidence 532111111 3 59999999999999999999999999999998 57 889999999999998554444
Q ss_pred cccHHHHHHHHHHHHhhcCCCCcEEeec--CCCCcc
Q 001939 943 LRSSEQVLEIQQRYKDATGYLPLIIEGS--SPGAGK 976 (993)
Q Consensus 943 ~~~~~~~~~i~~~y~~~~g~~~~~~~~~--~~G~~~ 976 (993)
.+ .+++..++++.... |+ .+|+.+ .||+.+
T Consensus 348 ~~-qe~i~~~ke~L~s~-gf--~v~~t~lGG~G~~v 379 (397)
T KOG1511|consen 348 TE-QEQIDKWKEELESH-GF--EVFETELGGPGVSV 379 (397)
T ss_pred Cc-hHHHHHHHHHHHhc-Cc--ceeeccCCCCceEE
Confidence 43 47899999998865 66 477764 666554
No 16
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=100.00 E-value=2e-38 Score=384.96 Aligned_cols=306 Identities=17% Similarity=0.238 Sum_probs=216.2
Q ss_pred ceEEEEcCccccccccccc------ccCCeeeccccccc----eEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEE
Q 001939 496 EIFVARAPGRLDVMGGIAD------YSGSLVLQMPIREA----CHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIV 565 (993)
Q Consensus 496 ~~~~~~APGRv~L~GeH~d------y~gg~vl~~AI~~~----~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~ 565 (993)
.+.+++|||||||+||||| |+||.|||+||+++ +++.++++++.++++.
T Consensus 608 ~~~~~~aPgRVnLiGghTDtPpy~~ynGG~VLn~AId~~g~~pi~v~v~~~~d~~irl~--------------------- 666 (974)
T PRK13412 608 QIVWGRSPVRIDLAGGWTDTPPYCLYSGGNVVNLAIELNGQPPLQVYVKPCSEPHIVLR--------------------- 666 (974)
T ss_pred cEEEEeCceEEeecccCcCCCcccCcCCcEEEEEEEeCCCCccEEEEEEECCCCeEEEE---------------------
Confidence 4456699999999999999 99999999999996 9999999988765543
Q ss_pred ecccccCCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHH-------------HHHHhCCCCCCCE
Q 001939 566 SYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILV-------------LMTELGVRFEDSI 632 (993)
Q Consensus 566 s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~-------------~~~~~g~~~~~g~ 632 (993)
|.+ +.+. ..++ ..+++. ......+|.+|+++++.. .+++.......|+
T Consensus 667 S~d--~~~~-~~v~-~~~~l~---------------~~~~~~~~~~~~K~al~~~G~~~~~~~~~~~~l~e~l~~~G~G~ 727 (974)
T PRK13412 667 SID--LGAM-EVVR-TNEELR---------------DYKKVGSPFSIPKAALCLAGFAPRFSAESYASLEEQLKAFGSGI 727 (974)
T ss_pred ECC--CCCc-eEEe-cchhhc---------------ccccccchHhhhhhhheecccccccccchhHHHHHHHHhcCCCe
Confidence 321 1110 0111 111110 012346799999988741 1211111112589
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecC
Q 001939 633 SMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQP 712 (993)
Q Consensus 633 ~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~ 712 (993)
+|+|.|+||+|+|||||||++||++.|++.+++.++++++++++|+.+|+..+|.+++ |||+++++||. +++++.+
T Consensus 728 ~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~ela~~A~~~E~~lhg~~g~-qDq~~a~~GG~---~~i~~~~ 803 (974)
T PRK13412 728 EITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGW-QDQYGGVLPGV---KLLQTGA 803 (974)
T ss_pred EEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCch-hhhhhHhcCCe---EEEEecC
Confidence 9999999999999999999999999999999999999999999999999987776655 89999999994 5566543
Q ss_pred c-cc---eeeecCCC------CeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccc
Q 001939 713 A-EL---LGVVEIPS------HIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEV 782 (993)
Q Consensus 713 ~-~~---~~~v~~p~------~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~ 782 (993)
. .. .++++.+. +-+++|+|||++|+++. +++.+..+++
T Consensus 804 ~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR~T~~---------------iV~~Vv~~~~----------------- 851 (974)
T PRK13412 804 GFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGITRTAKG---------------ILAEIVRSMF----------------- 851 (974)
T ss_pred CcccCcceeecCcchhhhhhccCcEEEEECCCeeeHHH---------------HHHHHHHHHH-----------------
Confidence 1 10 12233221 34699999999888642 3333221110
Q ss_pred hhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHH
Q 001939 783 DGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFK 862 (993)
Q Consensus 783 ~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~ 862 (993)
.+ ++.+.. ..+.+.+ -+.+++
T Consensus 852 ---------------~~--~~~~~~----------------------------------------~l~~ig~--La~ea~ 872 (974)
T PRK13412 852 ---------------LN--STAHLQ----------------------------------------LLHEMKA--HALDMY 872 (974)
T ss_pred ---------------hC--cHHHHH----------------------------------------HHHHHHH--HHHHHH
Confidence 00 000000 0111111 156788
Q ss_pred HHHHccCChhHHHHHHHHHHHhhhhhhhc--CCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEcc
Q 001939 863 ALLTAAASDDQLTSLGELLYQCHYSYSAC--GLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGR 940 (993)
Q Consensus 863 ~al~~~~~~~~l~~lG~Lm~~sH~slr~~--~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~ 940 (993)
++|+++ |++.||+||+++|..++.+ |||+|++|+|++.|++ |++|+||||||+|||++++.+
T Consensus 873 ~ALe~g----D~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~~------------gAlGaKLTGAGGGGcvI~Lak 936 (974)
T PRK13412 873 EAIQRG----EFEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIKD------------YTLGYKLPGAGGGGYLYMVAK 936 (974)
T ss_pred HHHHcC----CHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHc------------CCcEEEecccCcccEEEEEEC
Confidence 999986 9999999999999999998 9999999999999964 689999999999999998876
Q ss_pred CCcccHHHHHHH
Q 001939 941 NSLRSSEQVLEI 952 (993)
Q Consensus 941 ~~~~~~~~~~~i 952 (993)
+...++++.+++
T Consensus 937 ~~~~a~~I~~~L 948 (974)
T PRK13412 937 DPGAAERIRKIL 948 (974)
T ss_pred ChhhHHHHHHHH
Confidence 544333333333
No 17
>PTZ00298 mevalonate kinase; Provisional
Probab=100.00 E-value=5.7e-36 Score=336.53 Aligned_cols=299 Identities=18% Similarity=0.218 Sum_probs=219.3
Q ss_pred EEEcCcccccccccccccCCeeeccccccceEEEEEecC-cchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 001939 499 VARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKIS-PSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (993)
Q Consensus 499 ~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (993)
..+|||||+|||||+|+||.+++..+|+++..+.+...+ ++. +.+.+
T Consensus 12 ~~~~~~kvil~GEHaVvyg~~aI~~~I~~~d~~~i~~~~~~~~---------------------~~~~~----------- 59 (328)
T PTZ00298 12 KHIGYGKVILFGEHFVVYGAEAIVAGIDEYTECRLELTKGVPG---------------------LQVVD----------- 59 (328)
T ss_pred CCCcCeeEEEEecceeecCCchhhhecccceEEEEEEccCCCC---------------------ceecc-----------
Confidence 568999999999999999999999999998666666443 111 11110
Q ss_pred eeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCC-CCCEEEEEEeCCCCCCCCchHHHHHHHH
Q 001939 578 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRF-EDSISMLVSSAVPEGKGVSSSASVEVAS 656 (993)
Q Consensus 578 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~-~~g~~i~i~s~iP~g~GLgSSAA~~Va~ 656 (993)
+...+ | .....-.|.++.++..+.+..+... ..|++|.|.++||+++|||||||++||+
T Consensus 60 ---~~~~~-----~------------~~~~~~~n~~~~a~~~~~~~~~~~~~~~g~~I~I~~~IP~gaGLGSSsA~avA~ 119 (328)
T PTZ00298 60 ---QRPAV-----P------------GYIVEKREEQRKAHQLVLRHLNIDTSVDGLKMHLGGPLVPSSGIGASASDVVSL 119 (328)
T ss_pred ---ccccc-----c------------chHHHhHHHHHHHHHHHHHHHhcccCCCCeEEEEECCCCCCCCchHHHHHHHHH
Confidence 00000 0 0000115667777777777666532 1499999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCc-cceeeecCCCCeEEEEEeCCCc
Q 001939 657 MSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPA-ELLGVVEIPSHIRFWGIDSGIR 735 (993)
Q Consensus 657 ~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~-~~~~~v~~p~~~~~ll~dSgv~ 735 (993)
+.|++.+++.++++++|+++|+.+|+.++|.|+|. |+.++++||. +++..... ....+++++.++.+++++|+++
T Consensus 120 l~al~~l~~~~ls~~el~~~a~~~E~~~~g~~sG~-D~~~~~~Gg~---~~~~~~~g~~~~~~l~~~~~~~lvv~~~~~~ 195 (328)
T PTZ00298 120 SRALSELYQLNLTEEEVNLSAFVGEGGYHGTPSGA-DNTAATYGGL---ISYRRVNGKSVFKRIAFQQPLYLVVCSTGIT 195 (328)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCChH-HHHHHHcCCe---EEEecCCCccceeEecCCCCCeEEEEECCCc
Confidence 99999999999999999999999999999999995 9999999994 44443221 1224566667888999999998
Q ss_pred cccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCc
Q 001939 736 HSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPE 815 (993)
Q Consensus 736 ~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~ 815 (993)
++|.. ++..+ ..+++..++.++.
T Consensus 196 ~sT~~---------------~~~~v----------------------------------~~~~~~~p~~~~~-------- 218 (328)
T PTZ00298 196 ASTTK---------------VVGDV----------------------------------RKLKENQPTWFNR-------- 218 (328)
T ss_pred hhHHH---------------HHHHH----------------------------------HHHHhcCHHHHHH--------
Confidence 88742 11111 0111111211111
Q ss_pred cchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhhhhcCCCC
Q 001939 816 SIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSACGLGS 895 (993)
Q Consensus 816 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~slr~~~vs~ 895 (993)
+.+++.| ++.++..+|.++ |++.||++|+++|++|+++++++
T Consensus 219 ----------------------------~~~~~~~------~~~~~~~al~~~----d~~~lg~~m~~~~~~l~~~~v~~ 260 (328)
T PTZ00298 219 ----------------------------LLENYNA------CVSEAKEALQKG----NLFRVGELMNANHDLCQKLTVSC 260 (328)
T ss_pred ----------------------------HHHHHHH------HHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhCCCc
Confidence 1112333 356777888875 89999999999999999999999
Q ss_pred chHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhh
Q 001939 896 DGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDA 959 (993)
Q Consensus 896 ~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~ 959 (993)
|++|+|++.+++ .|++|+||||+|+|||++++.++...++++.+.+++.|...
T Consensus 261 p~l~~l~~~~~~-----------~Ga~gaklSGsG~GG~v~al~~~~~~a~~~~~~l~~~~~~~ 313 (328)
T PTZ00298 261 RELDSIVQTCRT-----------YGALGAKMSGTGRGGLVVALAASEDQRDAIAKAVRARCPEA 313 (328)
T ss_pred HHHHHHHHHHHh-----------CCCceeEeccCCCCeEEEEEecchhhHHHHHHHHHHHhhhc
Confidence 999999999987 68999999999999999988655333456778888777643
No 18
>PRK03926 mevalonate kinase; Provisional
Probab=100.00 E-value=8.4e-35 Score=324.76 Aligned_cols=295 Identities=23% Similarity=0.286 Sum_probs=215.1
Q ss_pred EEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 001939 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (993)
Q Consensus 498 ~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (993)
+.++|||||+|+|||+||+|+.+|.+||++++++.++++++. +.+.+.
T Consensus 2 ~~~~aPgkv~L~Geh~~~~g~~~l~~aI~~~~~v~i~~~~~~----------------------~~i~~~---------- 49 (302)
T PRK03926 2 VLCSAPGKIYLFGEHAVVYGKPAIACAIDLRTYVRAEFNDDS----------------------IYIESD---------- 49 (302)
T ss_pred eEEeeeeEEEEEecceeecCCeEEEEEecceEEEEEEECCCc----------------------eEEecc----------
Confidence 578999999999999999999999999999999999876432 111100
Q ss_pred eeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHH
Q 001939 578 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM 657 (993)
Q Consensus 578 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~ 657 (993)
+ . ....|.+|+..++..+.+..+ . +|++|+|.++||+++|||||||++||++
T Consensus 50 ~----~---------------------~~~~~~~~~~~~~~~~~~~~~--~-~g~~i~i~~~iP~~~GLGSSsA~~~a~~ 101 (302)
T PRK03926 50 Y----G---------------------KTGEKHPYVSAAIEKMREEAD--K-DGVTVSITSQIPVGSGLGSSAAVTVATI 101 (302)
T ss_pred c----c---------------------cccchhHHHHHHHHHHHHhcC--C-CCeEEEEecCCCCCCCccHHHHHHHHHH
Confidence 0 0 012567788888876655444 3 5899999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCCCccc
Q 001939 658 SAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHS 737 (993)
Q Consensus 658 ~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv~~~ 737 (993)
.+++.+++.++++++++++|+.+|+.++|.+|| +|++++++||. +++... .+++. +++.+++++|+.+++
T Consensus 102 ~al~~~~~~~l~~~~l~~la~~~E~~~~G~~sg-~D~~~~~~Gg~---~~~~~~-----~~l~~-~~~~~vl~~~~~~~s 171 (302)
T PRK03926 102 GALNRLLGLGLSLEEIAKLGHKVELLVQGAASP-TDTYVSTMGGF---VTIPDR-----KKLPF-PECGIVVGYTGSSGS 171 (302)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHcCCCch-HHHHHHhcCCe---EEEcCC-----CcCCC-CCceEEEEECCCCCc
Confidence 999999999999999999999999999999999 59999999994 333211 13343 378899999999887
Q ss_pred cCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCccc
Q 001939 738 VGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESI 817 (993)
Q Consensus 738 ~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i 817 (993)
|.. ++..+ ..+++..++.+..
T Consensus 172 T~~---------------~~~~~----------------------------------~~~~~~~~~~~~~---------- 192 (302)
T PRK03926 172 TKE---------------LVANV----------------------------------RKLKEEYPELIEP---------- 192 (302)
T ss_pred HHH---------------HHHHH----------------------------------HHHHHhCHHHHHH----------
Confidence 632 11111 0111111111110
Q ss_pred hhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhhhhcCCCCch
Q 001939 818 VGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSACGLGSDG 897 (993)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~slr~~~vs~~~ 897 (993)
..+.+.+ .+..+..++.++ |++.||++|+++|..++.+++++|+
T Consensus 193 ------------------------------~~~~~~~--~~~~~~~al~~~----d~~~l~~~~~~~~~~~~~~~~~~p~ 236 (302)
T PRK03926 193 ------------------------------ILSSIGK--ISEKGEELILSG----DYVSLGELMNINQGLLDALGVSTKE 236 (302)
T ss_pred ------------------------------HHHHHHH--HHHHHHHHHhcC----CHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 0000111 133455777775 9999999999999877778999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCcEEee--cCCCCc
Q 001939 898 TDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG--SSPGAG 975 (993)
Q Consensus 898 lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~--~~~G~~ 975 (993)
+|++++.+++ .|++|+||||+|+|||++++.+++. .+++.+++++. + ..++.. ...|+.
T Consensus 237 l~~l~~~~~~-----------~ga~ga~lSGaG~Gg~v~~l~~~~~-~~~~~~~~~~~-----~--~~~~~~~~~~~G~~ 297 (302)
T PRK03926 237 LSELIYAART-----------AGALGAKITGAGGGGCMVALAAPEK-QSEVATAIKIA-----G--GKPIITKITDEGLR 297 (302)
T ss_pred HHHHHHHHHh-----------CCCceeeeccCCCCCEEEEEecccc-HHHHHHHHHhc-----C--CeEEEEecCCCeeE
Confidence 9999999987 6899999999999999998875443 34555555432 1 234554 456765
Q ss_pred c
Q 001939 976 K 976 (993)
Q Consensus 976 ~ 976 (993)
+
T Consensus 298 i 298 (302)
T PRK03926 298 I 298 (302)
T ss_pred E
Confidence 4
No 19
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=100.00 E-value=2.3e-31 Score=299.53 Aligned_cols=311 Identities=27% Similarity=0.434 Sum_probs=213.7
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-ccccccCCCceEEeeeeccCCccccCccccChHHHHHH
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEK 94 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~-~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 94 (993)
|||+|+++|+|+||++||++|+++| +||+|+|++..+.. ++...+ .+... .+++..... ..++..++...
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~-~~~~~~~~~~~ 71 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPRF-----PVREI-PGLGPIQEN-GRLDRWKTVRN 71 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcccc-----CEEEc-cCceEeccC-CccchHHHHHH
Confidence 6899999999999999999999999 59999999887532 111111 11111 122222211 14455555555
Q ss_pred HHHHhhccHHHhHHHHHHHHhcCCCcEEEECCCchHHHHHHHcCCcEEEEecCchhHHHHHHHhhcccchHHHHHHH-Hh
Q 001939 95 YSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQI-AE 173 (993)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~a~laA~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~~l-~~ 173 (993)
...+.. .....+.+..+++++++||+||+|+.+.+..+|+..|+|+++++|..|...+....+.. ..+..+..+. ..
T Consensus 72 ~~~~~~-~~~~~~~~~~~~l~~~~pDlVIsD~~~~~~~aa~~~giP~i~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 149 (318)
T PF13528_consen 72 NIRWLA-RLARRIRREIRWLREFRPDLVISDFYPLAALAARRAGIPVIVISNQYWFLHPNFWLPWD-QDFGRLIERYIDR 149 (318)
T ss_pred HHHhhH-HHHHHHHHHHHHHHhcCCCEEEEcChHHHHHHHHhcCCCEEEEEehHHcccccCCcchh-hhHHHHHHHhhhh
Confidence 443321 34455677788999999999999999989999999999999998877643211111100 1111222222 22
Q ss_pred h-ccccceeeecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCChhhHHHhhCC-CCcEEE
Q 001939 174 D-YSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEEYLP-SGWKCL 251 (993)
Q Consensus 174 ~-y~~~d~ll~~p~~~~~p~~~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~~~ll~~l~~-~~~~~v 251 (993)
. +..++..+..++..+.+...++..+|+..++. .++.. +.+.+.|++++|+.+.+ .+++.+.. +++.++
T Consensus 150 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~------~~~~~--~~~~~~iLv~~gg~~~~-~~~~~l~~~~~~~~~ 220 (318)
T PF13528_consen 150 YHFPPADRRLALSFYPPLPPFFRVPFVGPIIRPE------IRELP--PEDEPKILVYFGGGGPG-DLIEALKALPDYQFI 220 (318)
T ss_pred ccCCcccceecCCccccccccccccccCchhccc------ccccC--CCCCCEEEEEeCCCcHH-HHHHHHHhCCCCeEE
Confidence 2 44455555555443323222333455443321 11111 23567899999988875 44443322 457777
Q ss_pred EeCCCCCC-CCCCeEECCCC-CCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE
Q 001939 252 VCGASDSQ-LPPNFIKLPKD-AYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM 329 (993)
Q Consensus 252 v~G~~~~~-l~~nv~~~~~~-~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l 329 (993)
++|..... .++|+++.+|. .+++++|+.||++||++|++|++|++++|+|+|++|.+.+.||..||+++++.|+|+.+
T Consensus 221 v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~ 300 (318)
T PF13528_consen 221 VFGPNAADPRPGNIHVRPFSTPDFAELMAAADLVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVL 300 (318)
T ss_pred EEcCCcccccCCCEEEeecChHHHHHHHHhCCEEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEc
Confidence 77876532 58999999987 78899999999999999999999999999999999988889999999999999999999
Q ss_pred ecCCCChhhHHHHHHHH
Q 001939 330 IRRDLLTGHWKPYLERA 346 (993)
Q Consensus 330 ~~~~~~~~~l~~~l~~l 346 (993)
+.++++++.|.++|+++
T Consensus 301 ~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 301 SQEDLTPERLAEFLERL 317 (318)
T ss_pred ccccCCHHHHHHHHhcC
Confidence 99999999999888765
No 20
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=277.32 Aligned_cols=312 Identities=22% Similarity=0.310 Sum_probs=217.8
Q ss_pred EEEEcCccccccccccccc------CCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEeccccc
Q 001939 498 FVARAPGRLDVMGGIADYS------GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSEL 571 (993)
Q Consensus 498 ~~~~APGRv~L~GeH~dy~------gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~ 571 (993)
++.+||-|+.+.|+.||+. ||.||+++||+++|+.+.+..+.++++. .
T Consensus 2 ii~raPLRItfgGGGTDvepy~~k~GGaVlnatIdky~y~~i~~~~d~~I~~~----------------------~---- 55 (333)
T COG2605 2 IISRAPLRITFGGGGTDVEPYCSKHGGAVLNATIDKYIYVTIEKGFDDEIRVR----------------------Y---- 55 (333)
T ss_pred cccccceEEEecCCCcCchHHHHhcCCEEEEeeeeeEEEEEEccCCCceEEEe----------------------c----
Confidence 4678999999999999975 9999999999999999999987664331 0
Q ss_pred CCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHH-HHHHhCCCCCCCEEEEEEeCCCCCCCCchHH
Q 001939 572 SNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILV-LMTELGVRFEDSISMLVSSAVPEGKGVSSSA 650 (993)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~-~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSA 650 (993)
++. + .++++ +.+ .++ ..++.++.. ++...|. +.+++...+|+|+|+|||||+
T Consensus 56 -~~~---~-~v~~~------~~~-----------~h~--~~~~~~l~r~~l~~~g~---~~~el~~~~D~P~GSGLGSSS 108 (333)
T COG2605 56 -DRT---E-FVKSY------LEN-----------EHK--PLVVESLKRDFLEFNGG---TPIELHTQSDAPPGSGLGSSS 108 (333)
T ss_pred -chH---H-hhhhh------Hhh-----------cCc--hHHHHHHHHHHHhhcCC---CceEEEEecCCCCCCCCCchH
Confidence 000 0 00110 110 011 223333332 2322222 239999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCcc-c-eeeecCCC-----
Q 001939 651 SVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAE-L-LGVVEIPS----- 723 (993)
Q Consensus 651 A~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~-~-~~~v~~p~----- 723 (993)
|++||++.|+..+-|..+++++|++.|..+|++..+.+.|.+||++++|||+|. ++|+... + +.++.+..
T Consensus 109 a~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFnf---MEf~~~~~V~v~pL~i~~e~~~E 185 (333)
T COG2605 109 AFVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFNF---MEFRGNGEVVVNPLRINRERTAE 185 (333)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccHHHHHhCCceE---EEEcCCCcEEEeecccchhHHHH
Confidence 999999999999999999999999999999999999999999999999999764 5665443 2 23444431
Q ss_pred -CeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCCh
Q 001939 724 -HIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSP 802 (993)
Q Consensus 724 -~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~ 802 (993)
..++++++||+.|..+. ++... ++++..
T Consensus 186 le~~~lL~yTGi~R~Ss~---------------V~~dQ------------------------------------~~~~~~ 214 (333)
T COG2605 186 LEARLLLYYTGITRQSSE---------------VIEDQ------------------------------------VRNVVD 214 (333)
T ss_pred HHhceEEEEeccccchhH---------------HHHHH------------------------------------HHHhhc
Confidence 56899999999887532 11111 000000
Q ss_pred HHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHH
Q 001939 803 HRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLY 882 (993)
Q Consensus 803 ~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~ 882 (993)
.+-+ . .++.|-+.+- +.+++++|-.+ |+..||++|+
T Consensus 215 ~~~~-------------------------~-------------~e~~~~mk~~--A~~~~~al~~n----d~~~f~~~l~ 250 (333)
T COG2605 215 GDEE-------------------------T-------------LEALHEMKAL--AYEMKDALVRN----DIPEFGQILD 250 (333)
T ss_pred ccHH-------------------------H-------------HHHHHHHHHH--HHHHHHHHHhc----chHHHHHHHH
Confidence 0000 0 0122222222 45788888775 8999999999
Q ss_pred Hhhhhhhhc--CCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhc
Q 001939 883 QCHYSYSAC--GLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDAT 960 (993)
Q Consensus 883 ~sH~slr~~--~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~ 960 (993)
++|+.-+.+ ++|.|.+|+|.+.|++ +||+|+|++|||.||.+.++++.... .+++++ .....
T Consensus 251 ~gW~~KK~ls~~ISN~~IDriy~~A~~-----------~GA~~gKl~GaG~gGFllf~~~p~k~-~~l~r~----l~~~~ 314 (333)
T COG2605 251 RGWEAKKKLSSRISNDAIDRIYELALK-----------NGAYGGKLSGAGGGGFLLFFCDPSKR-NELARA----LEKEQ 314 (333)
T ss_pred hHHHhhhhhccCcCcHHHHHHHHHHHh-----------cCchhceeeccCCccEEEEEeCccch-HHHHHH----HHHhc
Confidence 999999986 8899999999999998 79999999999999988766543331 244444 44444
Q ss_pred CCCCcEEeecCCCCcce
Q 001939 961 GYLPLIIEGSSPGAGKF 977 (993)
Q Consensus 961 g~~~~~~~~~~~G~~~~ 977 (993)
++.-. +...-+|++.+
T Consensus 315 ~~~~~-~~Fd~~Gsr~i 330 (333)
T COG2605 315 GFVVD-TSFDKEGSRII 330 (333)
T ss_pred CCeEE-EEecCCCeEEE
Confidence 44322 22366776654
No 21
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.96 E-value=1.2e-26 Score=274.49 Aligned_cols=372 Identities=12% Similarity=0.067 Sum_probs=231.3
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccc----c-Ccccc----
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQ----A-DALTV---- 86 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~----~-~~~~~---- 86 (993)
.+|+.+++..|..|..-+.+++++|.+|||+|++++..+....... ..+.++............ . ..+..
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASH-LCGNITEIDASLSVEYFKKLVKSSAVFRKRGVV 99 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccC-CCCCEEEEEcCCChHHHHHHHhhhhHHHhhhhh
Confidence 4576666778899999999999999999999999976542221110 111111111100000000 0 00000
Q ss_pred -ChHHHHHHHHHHhhccHHHhHH--HHHHHHh--cCCCcEEEECC-CchHHHHHHHc-CCcEEEEecCc---hh-HHH--
Q 001939 87 -DRLASLEKYSETAVAPRKSILK--DEVEWLN--SIKADLVVSDV-VPVACRAAADA-GIRSVCVTNFS---WD-FIY-- 153 (993)
Q Consensus 87 -~~~~~~~~~~~~~~~~~~~~l~--~~~~~L~--~~kPDlVVsD~-~~~a~laA~~~-gIP~V~i~~~~---~~-~~~-- 153 (993)
+...........+...+...+. ...++|+ +.++|+||+|. .+++...++.+ ++|.|.++... |. ...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~~~gg 179 (507)
T PHA03392 100 ADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFETMGA 179 (507)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHHhhcc
Confidence 0000000000000111222221 2356776 77899999996 67888889999 99988874422 21 000
Q ss_pred ----HHHHhhcccc-------hHHH-------------------HHHHHhhc-cc-----------cceeee-cCC--CC
Q 001939 154 ----AEYVMAAGHH-------HRSI-------------------VWQIAEDY-SH-----------CEFLIR-LPG--YC 188 (993)
Q Consensus 154 ----~~y~~~~~~~-------~~~i-------------------~~~l~~~y-~~-----------~d~ll~-~p~--~~ 188 (993)
..|+|..... ++.+ .+++.+.+ .. .+.++. ..+ ..
T Consensus 180 ~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~~~d~ 259 (507)
T PHA03392 180 VSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHPVFDN 259 (507)
T ss_pred CCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCccccC
Confidence 1122211000 0000 00111111 11 112221 111 22
Q ss_pred CCCCCCceeecCcccc---cCCcChHHHHHHhCCCCCCcEEEEEcCCCCC----hhh----HHHhhCCCCcEEEE-eC-C
Q 001939 189 PMPAFRDVIDVPLVVR---RLHKSRKEVRKELGIEDDVKLLILNFGGQPA----GWK----LKEEYLPSGWKCLV-CG-A 255 (993)
Q Consensus 189 ~~p~~~~v~~vp~~~~---~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~----~~~----ll~~l~~~~~~~vv-~G-~ 255 (993)
+.|-.+++..+|++.. ..++.++++.++++-. ++++||||+||... +.+ +++++...+..+++ .+ .
T Consensus 260 ~rp~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~-~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~ 338 (507)
T PHA03392 260 NRPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNS-TNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGE 338 (507)
T ss_pred CCCCCCCeeeecccccCCCCCCCCCHHHHHHHhcC-CCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3444567788887643 2245678888888743 45799999999753 222 33333333344443 33 2
Q ss_pred CCC-CCCCCeEECCCCCCHH--HHHhh--cCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEe
Q 001939 256 SDS-QLPPNFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMI 330 (993)
Q Consensus 256 ~~~-~l~~nv~~~~~~~~~p--dlL~~--adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~ 330 (993)
..+ .+|+|+.+.+ |+| ++|+| +++||||||.||++||+++|||+|++| .+.||+.||++++++|+|+.++
T Consensus 339 ~~~~~~p~Nv~i~~---w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP--~~~DQ~~Na~rv~~~G~G~~l~ 413 (507)
T PHA03392 339 VEAINLPANVLTQK---WFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLP--MMGDQFYNTNKYVELGIGRALD 413 (507)
T ss_pred cCcccCCCceEEec---CCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECC--CCccHHHHHHHHHHcCcEEEec
Confidence 333 4789999864 556 89965 999999999999999999999999999 7889999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHhCCCCcc-----------CCCCHHHHHHHHHHHHHccCccccCCCC-cchhhhHhhhhhhhhc
Q 001939 331 RRDLLTGHWKPYLERAISLKPCYE-----------GGINGGEVAAHILQETAIGKNYASDKLS-GARRLRDAIIFGYELQ 398 (993)
Q Consensus 331 ~~~~~~~~l~~~l~~ll~~~~~~~-----------~~~~ga~~~a~~i~~~~~~~~~~~~~~~-Ga~~Lr~a~~~~~~~q 398 (993)
..+++++.+.++|+++++++ .|+ +++..+.+.|.+|.++ +.||+ |+.|||
T Consensus 414 ~~~~t~~~l~~ai~~vl~~~-~y~~~a~~ls~~~~~~p~~~~~~av~~iE~-------v~r~~~g~~~lr---------- 475 (507)
T PHA03392 414 TVTVSAAQLVLAIVDVIENP-KYRKNLKELRHLIRHQPMTPLHKAIWYTEH-------VIRNKHGNTSLK---------- 475 (507)
T ss_pred cCCcCHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------HHhCCCCccccc----------
Confidence 99999999999999999886 332 5666555555666666 57898 999999
Q ss_pred ccCCCccccccccccccc
Q 001939 399 RVPGRDVSIPEWYQTAED 416 (993)
Q Consensus 399 ~~~~~~~~~p~w~~~~~~ 416 (993)
+++.+++ |+||+..
T Consensus 476 -~~~~~l~---~~qy~~l 489 (507)
T PHA03392 476 -TKAANVS---YSDYFMS 489 (507)
T ss_pred -ccccCCC---HHHHHHH
Confidence 9999999 9999976
No 22
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=1.1e-25 Score=256.00 Aligned_cols=326 Identities=14% Similarity=0.149 Sum_probs=209.8
Q ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHH
Q 001939 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASL 92 (993)
Q Consensus 13 m~~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 92 (993)
|+++.| ++|...||++|+++||++|+++||+|.|++.... +....++..++.+.... ..++. +...+
T Consensus 1 ~~~i~~---~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~-~e~~l~~~~g~~~~~~~-~~~l~--------~~~~~ 67 (352)
T PRK12446 1 MKKIVF---TGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQG-IEKTIIEKENIPYYSIS-SGKLR--------RYFDL 67 (352)
T ss_pred CCeEEE---EcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCc-cccccCcccCCcEEEEe-ccCcC--------CCchH
Confidence 555444 5666689999999999999999999999976532 22222211112222110 01110 00011
Q ss_pred HHHHHHhhccHHHhHHHHHHHHhcCCCcEEEECCCc---hHHHHHHHcCCcEEEEecCchhHHHHHHHhhcccchHHHHH
Q 001939 93 EKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVP---VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVW 169 (993)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~---~a~laA~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~ 169 (993)
..+...+ .......+...++++++||+||++..+ .++++|+.+++|++.+.+.... .. ..
T Consensus 68 ~~~~~~~--~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~----g~-----------~n 130 (352)
T PRK12446 68 KNIKDPF--LVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTP----GL-----------AN 130 (352)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCc----cH-----------HH
Confidence 1222211 111223455678999999999987643 3578899999999998443311 00 11
Q ss_pred HHHhhccccceeeecCCCC-CCC-CCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCCh--hhHHHhh--
Q 001939 170 QIAEDYSHCEFLIRLPGYC-PMP-AFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLKEEY-- 243 (993)
Q Consensus 170 ~l~~~y~~~d~ll~~p~~~-~~p-~~~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~~ll~~l-- 243 (993)
++...+... .+..++... ..+ ....++++|+........+++.++.+++++++++|+++.||+|.. .+++...
T Consensus 131 r~~~~~a~~-v~~~f~~~~~~~~~~k~~~tG~Pvr~~~~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~ 209 (352)
T PRK12446 131 KIALRFASK-IFVTFEEAAKHLPKEKVIYTGSPVREEVLKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALP 209 (352)
T ss_pred HHHHHhhCE-EEEEccchhhhCCCCCeEEECCcCCcccccccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHH
Confidence 111111110 111222110 011 122456666654332233456667788888899999999999985 2333221
Q ss_pred -CCCCcE-EEEeCCCCCC--C--CCCeEECCCC-CCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCC---CCh
Q 001939 244 -LPSGWK-CLVCGASDSQ--L--PPNFIKLPKD-AYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYF---NEE 313 (993)
Q Consensus 244 -~~~~~~-~vv~G~~~~~--l--~~nv~~~~~~-~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~---~EQ 313 (993)
+..++. +.+||.+.-+ + -.++.+.+|. ++|+++|++||++|||+|++|++|++++|+|+|++|.+.. .+|
T Consensus 210 ~l~~~~~vv~~~G~~~~~~~~~~~~~~~~~~f~~~~m~~~~~~adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q 289 (352)
T PRK12446 210 ELLLKYQIVHLCGKGNLDDSLQNKEGYRQFEYVHGELPDILAITDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQ 289 (352)
T ss_pred hhccCcEEEEEeCCchHHHHHhhcCCcEEecchhhhHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchH
Confidence 223464 4478976421 1 1466777888 6899999999999999999999999999999999997542 489
Q ss_pred HHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc------CCCCHHHHHHHHHHH
Q 001939 314 PFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE------GGINGGEVAAHILQE 369 (993)
Q Consensus 314 ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~------~~~~ga~~~a~~i~~ 369 (993)
..||+++++.|++..+..++++++.+.++|.+++.++..+. ..++++.++++.+++
T Consensus 290 ~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~~~~aa~~i~~~i~~ 351 (352)
T PRK12446 290 ILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYKTALKKYNGKEAIQTIIDHISE 351 (352)
T ss_pred HHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 99999999999999999899999999999999987764433 567888888777654
No 23
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.94 E-value=3.8e-25 Score=257.26 Aligned_cols=344 Identities=19% Similarity=0.133 Sum_probs=200.1
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccc-----cChHH
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALT-----VDRLA 90 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~ 90 (993)
|+|+|+..+ +.||+.|+++||++|+++||+|+|++.... ...+...++.+.+...+.......... .....
T Consensus 1 mrIl~~~~p-~~GHv~P~l~la~~L~~rGh~V~~~t~~~~---~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (401)
T cd03784 1 MRVLITTIG-SRGDVQPLVALAWALRAAGHEVRVATPPEF---ADLVEAAGLEFVPVGGDPDELLASPERNAGLLLLGPG 76 (401)
T ss_pred CeEEEEeCC-CcchHHHHHHHHHHHHHCCCeEEEeeCHhH---HHHHHHcCCceeeCCCCHHHHHhhhhhcccccccchH
Confidence 467666554 799999999999999999999999988641 111111122232221111110000000 00011
Q ss_pred HHHHHHHHhhccHHHhHHHHHHHHhcCCCcEEEECC-CchHHHHHHHcCCcEEEEecCchhHHH----------H-HHHh
Q 001939 91 SLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWDFIY----------A-EYVM 158 (993)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~~~~~~----------~-~y~~ 158 (993)
........+.......+.+..+.++.++||+||+|. .+.+..+|+.+|||++.+....|.... . .+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (401)
T cd03784 77 LLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPLGRANLRLYAL 156 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCccchHHHHHHHH
Confidence 111112222223344455566667789999999996 677788999999999988543321000 0 0000
Q ss_pred -hcc---cchHHHHHHHHhhccc---------c-ceeeecCCCC--CCCCCC---ceeecCccccc-CCcChHHHHHHhC
Q 001939 159 -AAG---HHHRSIVWQIAEDYSH---------C-EFLIRLPGYC--PMPAFR---DVIDVPLVVRR-LHKSRKEVRKELG 218 (993)
Q Consensus 159 -~~~---~~~~~i~~~l~~~y~~---------~-d~ll~~p~~~--~~p~~~---~v~~vp~~~~~-~~~~~~~~r~~l~ 218 (993)
... .............+.. . ..+..++... ..+..+ ...+.+..... ....+.++..++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 236 (401)
T cd03784 157 LEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRDVPYNGPPPPELWLFLA 236 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCCCCCccccCcEeCCCCCCCCCCCCCCHHHHHHHh
Confidence 000 0000001111111211 0 1111111111 111111 11111211111 1122344555554
Q ss_pred CCCCCcEEEEEcCCCCCh--hhHH----HhhCCCCcEE-EEeCCCCC---CCCCCeEECCCCCCHHHHHhhcCEEEecCC
Q 001939 219 IEDDVKLLILNFGGQPAG--WKLK----EEYLPSGWKC-LVCGASDS---QLPPNFIKLPKDAYTPDFMAASDCMLGKIG 288 (993)
Q Consensus 219 ~~~~~~~Vlvs~G~~~~~--~~ll----~~l~~~~~~~-vv~G~~~~---~l~~nv~~~~~~~~~pdlL~~adl~It~~G 288 (993)
+++++|||++||.... ..++ +.+...++.+ +.+|.... .+++|+++.+|.+ +.++|++||+||+|||
T Consensus 237 --~~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~~~~~~~v~~~~~~p-~~~ll~~~d~~I~hgG 313 (401)
T cd03784 237 --AGRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLGAEDLPDNVRVVDFVP-HDWLLPRCAAVVHHGG 313 (401)
T ss_pred --CCCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccccccCCCCceEEeCCCC-HHHHhhhhheeeecCC
Confidence 4678999999998652 2222 2333335544 45665432 2688999998875 4689999999999999
Q ss_pred hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc---------CCCCH
Q 001939 289 YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGING 359 (993)
Q Consensus 289 ~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~g 359 (993)
+||++|++++|+|+|++| .+.||+.||+++++.|+|+.+...+++++.+.++|+++++++ .++ ...+|
T Consensus 314 ~~t~~eal~~GvP~v~~P--~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~-~~~~~~~~~~~~~~~~g 390 (401)
T cd03784 314 AGTTAAALRAGVPQLVVP--FFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPP-SRRRAAALLRRIREEDG 390 (401)
T ss_pred chhHHHHHHcCCCEEeeC--CCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHH-HHHHHHHHHHHHHhccC
Confidence 999999999999999999 567999999999999999999888888999999999998754 221 24566
Q ss_pred HHHHHHHHHH
Q 001939 360 GEVAAHILQE 369 (993)
Q Consensus 360 a~~~a~~i~~ 369 (993)
+..+++.|++
T Consensus 391 ~~~~~~~ie~ 400 (401)
T cd03784 391 VPSAADVIER 400 (401)
T ss_pred HHHHHHHHhh
Confidence 6666666653
No 24
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.93 E-value=1.3e-24 Score=245.04 Aligned_cols=307 Identities=17% Similarity=0.134 Sum_probs=184.6
Q ss_pred EEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCC-cccccccCCCceEEeeeeccCCccccCccccChHHHHHHH
Q 001939 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPD-FVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY 95 (993)
Q Consensus 17 ~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~-~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 95 (993)
+|+|+++|+|+||++|+++|+++|++ ||+|+|++.... .++.... .+.+...+ +.. +...++ .++..+++...
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~-~~~~~~~p-~~~--~~~~~~-~~~~~~~l~~~ 74 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYG-FKVFETFP-GIK--LKGEDG-KVNIVKTLRNK 74 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhc-CcceeccC-Cce--EeecCC-cCcHHHHHHhh
Confidence 47889999999999999999999999 999999876541 1111110 11111111 000 111111 13333343322
Q ss_pred HHHhhccHHHhHHHHHHHHhcCCCcEEEECCCchHHHHHHHcCCcEEEEecCchhHHHHHHHhhcccchHHHHHHHH-hh
Q 001939 96 SETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIA-ED 174 (993)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~a~laA~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~~l~-~~ 174 (993)
..+ ....+..+.+++++++||+||+|+.+.+.++|+.++||++.+.+ .+...+.... ....+..+.+. ..
T Consensus 75 ~~~----~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~aA~~~~iP~i~i~~-q~~~~~~~~~----~~~~~~~~~~~~~~ 145 (321)
T TIGR00661 75 EYS----PKKAIRREINIIREYNPDLIISDFEYSTVVAAKLLKIPVICISN-QNYTRYPLKT----DLIVYPTMAALRIF 145 (321)
T ss_pred ccc----cHHHHHHHHHHHHhcCCCEEEECCchHHHHHHHhcCCCEEEEec-chhhcCCccc----chhHHHHHHHHHHh
Confidence 121 11345677889999999999999999999999999999998865 2211110000 00111111222 22
Q ss_pred ccccceeeecCCCCCCCCCCceeecCcccc-cC-CcChHHHHHHhCCCCCCcEEEEEcCCCCChhhHHHhhCC-CCcEEE
Q 001939 175 YSHCEFLIRLPGYCPMPAFRDVIDVPLVVR-RL-HKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKEEYLP-SGWKCL 251 (993)
Q Consensus 175 y~~~d~ll~~p~~~~~p~~~~v~~vp~~~~-~~-~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~~~ll~~l~~-~~~~~v 251 (993)
+..++.+...++..+.+.. |.... .+ +..+.+..+.. +.+.+.|++++|+.+.. .+++.+.. +++.++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~------p~~~~~~~~~~~~~~~~~~~--~~~~~~iLv~~g~~~~~-~l~~~l~~~~~~~~i 216 (321)
T TIGR00661 146 NERCERFIVPDYPFPYTIC------PKIIKNMEGPLIRYDVDDVD--NYGEDYILVYIGFEYRY-KILELLGKIANVKFV 216 (321)
T ss_pred ccccceEeeecCCCCCCCC------ccccccCCCcccchhhhccc--cCCCCcEEEECCcCCHH-HHHHHHHhCCCeEEE
Confidence 2233333322222111111 21111 11 11112222211 23456788888876653 34444422 234444
Q ss_pred EeCCCC--CCCCCCeEECCCCC-CHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEE
Q 001939 252 VCGASD--SQLPPNFIKLPKDA-YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVE 328 (993)
Q Consensus 252 v~G~~~--~~l~~nv~~~~~~~-~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~ 328 (993)
+.+... ..+++|+.+.+|.. +++++|+.||++|||+|++|++|++++|+|+|++|.+.+.||..||+.+++.|+|+.
T Consensus 217 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~ 296 (321)
T TIGR00661 217 CYSYEVAKNSYNENVEIRRITTDNFKELIKNAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIA 296 (321)
T ss_pred EeCCCCCccccCCCEEEEECChHHHHHHHHhCCEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEE
Confidence 333221 12678999988884 788999999999999999999999999999999998877799999999999999999
Q ss_pred EecCCCChhhHHHHHHHHHhCC
Q 001939 329 MIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 329 l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
++..++ .+..++.+.+.++
T Consensus 297 l~~~~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 297 LEYKEL---RLLEAILDIRNMK 315 (321)
T ss_pred cChhhH---HHHHHHHhccccc
Confidence 987765 3444555555454
No 25
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=99.93 E-value=1.6e-27 Score=285.34 Aligned_cols=197 Identities=19% Similarity=0.242 Sum_probs=110.1
Q ss_pred CceeecCccc-ccCCcChHHHHHHhCCCCCCcEEEEEcCCCCCh--hh----HHHhhCCCCcEEEE-eCCCCCC-CCCCe
Q 001939 194 RDVIDVPLVV-RRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WK----LKEEYLPSGWKCLV-CGASDSQ-LPPNF 264 (993)
Q Consensus 194 ~~v~~vp~~~-~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~~----ll~~l~~~~~~~vv-~G~~~~~-l~~nv 264 (993)
+.+..+|.+. .++++.+++++++++.+.++++|||||||.... .+ +++.+...+..+++ .....+. +|+|+
T Consensus 246 p~v~~vGgl~~~~~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~~~l~~n~ 325 (500)
T PF00201_consen 246 PNVVEVGGLHIKPAKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPPENLPKNV 325 (500)
T ss_dssp CTSTTGCGC-S----TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHGCHHHTTE
T ss_pred hcccccCccccccccccccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCcccccccccccccccceE
Confidence 4455666653 345677888998887545789999999997642 22 33333333334443 3332223 78999
Q ss_pred EECCCCCCHH--HHHhh--cCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHH
Q 001939 265 IKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWK 340 (993)
Q Consensus 265 ~~~~~~~~~p--dlL~~--adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~ 340 (993)
++. +|+| ++|+| +++||||||+||++||+++|||||++| .+.||+.||+++++.|+|+.++..+++.+.+.
T Consensus 326 ~~~---~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P--~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~ 400 (500)
T PF00201_consen 326 LIV---KWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIP--LFGDQPRNAARVEEKGVGVVLDKNDLTEEELR 400 (500)
T ss_dssp EEE---SS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-G--CSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHH
T ss_pred EEe---ccccchhhhhcccceeeeeccccchhhhhhhccCCccCCC--CcccCCccceEEEEEeeEEEEEecCCcHHHHH
Confidence 885 6888 89976 789999999999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHHHhCCCC----------ccCCCCHHHHHHHHHHHHHccCccccCCCCcchhhhHhhhhhhhhcccCCCccccccc
Q 001939 341 PYLERAISLKPC----------YEGGINGGEVAAHILQETAIGKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEW 410 (993)
Q Consensus 341 ~~l~~ll~~~~~----------~~~~~~ga~~~a~~i~~~~~~~~~~~~~~~Ga~~Lr~a~~~~~~~q~~~~~~~~~p~w 410 (993)
++|+++++|++. ++++|..+.+.|.+|.|+ +.||+|++||| +++.+++ |
T Consensus 401 ~ai~~vl~~~~y~~~a~~ls~~~~~~p~~p~~~~~~~ie~-------v~~~~~~~~l~-----------~~~~~l~---~ 459 (500)
T PF00201_consen 401 AAIREVLENPSYKENAKRLSSLFRDRPISPLERAVWWIEY-------VARHGGAPHLR-----------SPARDLS---F 459 (500)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHTTT--------------------------------------------------------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-------HHhcCCCcccC-----------ChhhcCC---H
Confidence 999999998731 227899999999999999 88999999999 9999999 9
Q ss_pred cccccc
Q 001939 411 YQTAED 416 (993)
Q Consensus 411 ~~~~~~ 416 (993)
+||+..
T Consensus 460 ~~~~~l 465 (500)
T PF00201_consen 460 YQYYLL 465 (500)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 999976
No 26
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=1.4e-23 Score=235.99 Aligned_cols=318 Identities=19% Similarity=0.159 Sum_probs=202.2
Q ss_pred cCCCCcccHHHHHHHHHHHHHCCCe-EEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHHHHHhh
Q 001939 22 VTGHGFGHATRVVEVVRNLISAGHD-VHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAV 100 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~~~Gh~-V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 100 (993)
..|.+.||+.++++|+++|.++|++ |.+..... .+.........+.+..+ +.+..... . .+..+...+
T Consensus 6 ~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~-~~e~~l~~~~~~~~~~I--~~~~~~~~-~------~~~~~~~~~- 74 (357)
T COG0707 6 TAGGTGGHVFPALALAEELAKRGWEQVIVLGTGD-GLEAFLVKQYGIEFELI--PSGGLRRK-G------SLKLLKAPF- 74 (357)
T ss_pred EeCCCccchhHHHHHHHHHHhhCccEEEEecccc-cceeeeccccCceEEEE--eccccccc-C------cHHHHHHHH-
Confidence 4566679999999999999999995 65553322 11111111112222221 11111100 0 011111111
Q ss_pred ccHHHhHHHHHHHHhcCCCcEEEECC---CchHHHHHHHcCCcEEEE-ecCchhHHHHHHHhhcccchHHHHHHHHhhcc
Q 001939 101 APRKSILKDEVEWLNSIKADLVVSDV---VPVACRAAADAGIRSVCV-TNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYS 176 (993)
Q Consensus 101 ~~~~~~l~~~~~~L~~~kPDlVVsD~---~~~a~laA~~~gIP~V~i-~~~~~~~~~~~y~~~~~~~~~~i~~~l~~~y~ 176 (993)
.....+.+..++|++++||+|++.. ...+.++|..++||++.+ +|..... .+.+...+.
T Consensus 75 -~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~----------------ank~~~~~a 137 (357)
T COG0707 75 -KLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGL----------------ANKILSKFA 137 (357)
T ss_pred -HHHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcch----------------hHHHhHHhh
Confidence 1112355668899999999999865 445677889999999998 5643110 001111110
Q ss_pred ccceee-ecC--CCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCCh--hhHHHhh---CCCCc
Q 001939 177 HCEFLI-RLP--GYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLKEEY---LPSGW 248 (993)
Q Consensus 177 ~~d~ll-~~p--~~~~~p~~~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~~ll~~l---~~~~~ 248 (993)
+.+. ..+ .....+....++++|+...........++. .+. .++++|+|+.||+|+. .+++.+. +..++
T Consensus 138 --~~V~~~f~~~~~~~~~~~~~~tG~Pvr~~~~~~~~~~~~~-~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~~~ 213 (357)
T COG0707 138 --KKVASAFPKLEAGVKPENVVVTGIPVRPEFEELPAAEVRK-DGR-LDKKTILVTGGSQGAKALNDLVPEALAKLANRI 213 (357)
T ss_pred --ceeeeccccccccCCCCceEEecCcccHHhhccchhhhhh-hcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhhCe
Confidence 0111 111 001111122456666654322211222332 222 2788999999999985 2333322 22245
Q ss_pred EE-EEeCCCCCC-----C-CCC-eEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCC--CChHHHHH
Q 001939 249 KC-LVCGASDSQ-----L-PPN-FIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYF--NEEPFLRN 318 (993)
Q Consensus 249 ~~-vv~G~~~~~-----l-~~n-v~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~--~EQ~~na~ 318 (993)
.+ ..+|.+..+ . ..| +++.+|.++|+++|+.||++||++|.+|++|++++|+|+|++|++.. ++|..||+
T Consensus 214 ~v~~~~G~~~~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~ 293 (357)
T COG0707 214 QVIHQTGKNDLEELKSAYNELGVVRVLPFIDDMAALLAAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAK 293 (357)
T ss_pred EEEEEcCcchHHHHHHHHhhcCcEEEeeHHhhHHHHHHhccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHH
Confidence 44 467887521 1 223 88999999999999999999999999999999999999999998866 68889999
Q ss_pred HHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc---------CCCCHHHHHHHHHHHHH
Q 001939 319 MLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQETA 371 (993)
Q Consensus 319 ~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~ga~~~a~~i~~~~ 371 (993)
.+++.|+|+.++..+++++.+.+.|.++++++..+. ..++.+.++++.++...
T Consensus 294 ~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~p~aa~~i~~~~~~~~ 355 (357)
T COG0707 294 FLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLGKPDAAERIADLLLALA 355 (357)
T ss_pred HHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999998764332 68999999998888763
No 27
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.92 E-value=7.6e-24 Score=234.55 Aligned_cols=262 Identities=13% Similarity=0.170 Sum_probs=186.9
Q ss_pred EEEEcCccccc----cccccc-ccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccC
Q 001939 498 FVARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELS 572 (993)
Q Consensus 498 ~~~~APGRv~L----~GeH~d-y~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~ 572 (993)
+.++||||||| +|+|.| ||...++.+||+++.++.+++.++.. +.+.+.
T Consensus 3 ~~~~apakinl~l~i~g~~~dg~h~l~si~~ai~l~~~v~v~~~~~~~---------------------~~i~~~----- 56 (286)
T PRK00128 3 ILEKAPAKINLSLDVLGKREDGYHEVEMIMQTIDLADRLEIEKLKEDG---------------------IVVESN----- 56 (286)
T ss_pred EEEeccceEEEEeecCccCCCCcceeheeeEecCCCcEEEEEECCCCC---------------------EEEEeC-----
Confidence 56799999999 899999 99999999999999999999875432 222210
Q ss_pred CCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHH
Q 001939 573 NRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASV 652 (993)
Q Consensus 573 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~ 652 (993)
+ .. ....|.|++..++..+.+.++.. .|++|.|.++||.++|||||||.
T Consensus 57 --------~-~~--------------------~~~~~~n~~~~~~~~~~~~~~~~--~~~~i~i~~~iP~~~GLGSSsa~ 105 (286)
T PRK00128 57 --------N-RY--------------------VPNDERNLAYKAAKLLKERYNIK--QGVSITIDKNIPVAAGLAGGSSD 105 (286)
T ss_pred --------C-CC--------------------CCCCCCcHHHHHHHHHHHhcCCC--CCeEEEEEcCCCccccchHHHHH
Confidence 0 00 01235678888888777666654 68999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeC
Q 001939 653 EVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDS 732 (993)
Q Consensus 653 ~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dS 732 (993)
++|++.++++++|.++++++++++|.++|. |..++++||. ++...+. +...+++.+++..++++++
T Consensus 106 a~a~~~al~~~~~~~l~~~~l~~~a~~~g~----------dv~~~~~Gg~---~~~~~~g-~~~~~~~~~~~~~~vv~~p 171 (286)
T PRK00128 106 AAATLRGLNKLWNLGLSLEELAEIGLEIGS----------DVPFCIYGGT---ALATGRG-EKITPLKSPPSCWVVLAKP 171 (286)
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHhCC----------CCCeEeeCCe---EEEecCC-cccccCCCCCCcEEEEEcC
Confidence 999999999999999999999999998762 6678899984 3343332 2224455455778999988
Q ss_pred CCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhc
Q 001939 733 GIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKN 812 (993)
Q Consensus 733 gv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~ 812 (993)
+...+|.. +.+ .
T Consensus 172 ~~~~~T~~---------------~~~-----------------------------------------------------~ 183 (286)
T PRK00128 172 DIGVSTKD---------------VYK-----------------------------------------------------N 183 (286)
T ss_pred CCCCCHHH---------------HHh-----------------------------------------------------c
Confidence 76554421 000 0
Q ss_pred CCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhhhhcC
Q 001939 813 IPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSACG 892 (993)
Q Consensus 813 lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~slr~~~ 892 (993)
++. ++.. ...+..+..++..+ |++.+|++|+ ..+..++
T Consensus 184 ~~~------------------------------~~~~-----~~~~~~~~~~l~~~----d~~~~~~~~~---n~l~~~~ 221 (286)
T PRK00128 184 LDL------------------------------DKIS-----HPDTEKLIEAIEEG----DYQGICANMG---NVLENVT 221 (286)
T ss_pred Ccc------------------------------cccc-----CcchHHHHHHHhcC----CHHHHHHhcc---CcHHHHH
Confidence 000 0000 00134566777775 8999999985 3444455
Q ss_pred C-CCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHH
Q 001939 893 L-GSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQ 953 (993)
Q Consensus 893 v-s~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~ 953 (993)
+ .+|+++++++.+++ .|++|++|||+| +|++++.+++.+.+++.++++
T Consensus 222 ~~~~p~l~~l~~~~~~-----------~Ga~g~~lSGsG--~sv~~l~~~~~~~~~i~~~l~ 270 (286)
T PRK00128 222 LKKYPEIAKIKERMLK-----------FGADGALMSGSG--PTVFGLFDDESRAQRIYNGLK 270 (286)
T ss_pred HhhChHHHHHHHHHHh-----------cCCCeeEEcccC--ccEEEEeCCHHHHHHHHHHhH
Confidence 5 48999999999987 689999999999 999888765332233444443
No 28
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.91 E-value=2.7e-23 Score=239.63 Aligned_cols=340 Identities=18% Similarity=0.206 Sum_probs=201.2
Q ss_pred cEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC--CcccccccCCCceEEeeeeccCCccccCccccChHHHH
Q 001939 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP--DFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASL 92 (993)
Q Consensus 15 ~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~--~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 92 (993)
+|||+|+++|. .||+.|+++|+++|+++||+|+|+|... .++....+. +...+.. +......+ ...+..++.
T Consensus 1 ~mkil~~~~~~-~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag~~---f~~~~~~-~~~~~~~~-~~~~~~~~~ 74 (406)
T COG1819 1 RMKILFVVCGA-YGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAGLA---FVAYPIR-DSELATED-GKFAGVKSF 74 (406)
T ss_pred CceEEEEeccc-cccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhCcc---eeecccc-CChhhhhh-hhhhccchh
Confidence 37888888888 9999999999999999999999999864 111111110 1111100 10000000 001111111
Q ss_pred H-HHHHHhhccHHHhHHHHHHHHhcCCCcEEEECCCchHHHHHHHcCCcEEEEecCchh----------HH--H------
Q 001939 93 E-KYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWD----------FI--Y------ 153 (993)
Q Consensus 93 ~-~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~a~laA~~~gIP~V~i~~~~~~----------~~--~------ 153 (993)
. .+. .....+.+..+.+.+..||+|+.|...+..+++...++|++...+..|. .. .
T Consensus 75 ~~~~~-----~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (406)
T COG1819 75 RRLLQ-----QFKKLIRELLELLRELEPDLVVDDARLSLGLAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLPIP 149 (406)
T ss_pred HHHhh-----hhhhhhHHHHHHHHhcchhhhhcchhhhhhhhhhhcccchhhhhhhhccCCcccccCccccccccccccc
Confidence 1 111 1222345567788999999999998655557777778877765221110 00 0
Q ss_pred -HHHHhhccc---chHHHHHHHHhhccc-cc-------eeeecCCCC--------CCC--CCC-ceeecCcccccCCcCh
Q 001939 154 -AEYVMAAGH---HHRSIVWQIAEDYSH-CE-------FLIRLPGYC--------PMP--AFR-DVIDVPLVVRRLHKSR 210 (993)
Q Consensus 154 -~~y~~~~~~---~~~~i~~~l~~~y~~-~d-------~ll~~p~~~--------~~p--~~~-~v~~vp~~~~~~~~~~ 210 (993)
......... ............+.. .. .++..++.. ..| .++ ....+|+....+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--- 226 (406)
T COG1819 150 LYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPYIGPLLGEAA--- 226 (406)
T ss_pred ccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCcccccccccc---
Confidence 000000000 000000000000100 00 000000000 000 001 0111222111111
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCChhhH----HHhhCCCCcEEEEe-CCCCC---CCCCCeEECCCCCCHHHHHhhcCE
Q 001939 211 KEVRKELGIEDDVKLLILNFGGQPAGWKL----KEEYLPSGWKCLVC-GASDS---QLPPNFIKLPKDAYTPDFMAASDC 282 (993)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~G~~~~~~~l----l~~l~~~~~~~vv~-G~~~~---~l~~nv~~~~~~~~~pdlL~~adl 282 (993)
.+.. ...+.++|+||+++||.....++ ++.+...+..+++. |.... .+|.|+.+.+|.+. ..++++||+
T Consensus 227 ~~~~--~~~~~d~~~vyvslGt~~~~~~l~~~~~~a~~~l~~~vi~~~~~~~~~~~~~p~n~~v~~~~p~-~~~l~~ad~ 303 (406)
T COG1819 227 NELP--YWIPADRPIVYVSLGTVGNAVELLAIVLEALADLDVRVIVSLGGARDTLVNVPDNVIVADYVPQ-LELLPRADA 303 (406)
T ss_pred ccCc--chhcCCCCeEEEEcCCcccHHHHHHHHHHHHhcCCcEEEEeccccccccccCCCceEEecCCCH-HHHhhhcCE
Confidence 1110 11446899999999998853222 23455567776665 44222 27999999876652 489999999
Q ss_pred EEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc--------
Q 001939 283 MLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE-------- 354 (993)
Q Consensus 283 ~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~-------- 354 (993)
||||||+||++||+++|||+|++| ...||+.||.++++.|+|+.+..+.++++.++++|+++|+++...+
T Consensus 304 vI~hGG~gtt~eaL~~gvP~vv~P--~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~ 381 (406)
T COG1819 304 VIHHGGAGTTSEALYAGVPLVVIP--DGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSYRRAAERLAEE 381 (406)
T ss_pred EEecCCcchHHHHHHcCCCEEEec--CCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999 5689999999999999999999999999999999999998873221
Q ss_pred -CCCCHHHHHHHHHHHHHcc
Q 001939 355 -GGINGGEVAAHILQETAIG 373 (993)
Q Consensus 355 -~~~~ga~~~a~~i~~~~~~ 373 (993)
...+|...+|+.|++....
T Consensus 382 ~~~~~g~~~~a~~le~~~~~ 401 (406)
T COG1819 382 FKEEDGPAKAADLLEEFARE 401 (406)
T ss_pred hhhcccHHHHHHHHHHHHhc
Confidence 5778888899999997543
No 29
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.91 E-value=1.9e-22 Score=234.00 Aligned_cols=335 Identities=15% Similarity=0.110 Sum_probs=197.1
Q ss_pred CCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCcc-ccCccccChHHHHHHHHHHhhcc
Q 001939 24 GHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAV-QADALTVDRLASLEKYSETAVAP 102 (993)
Q Consensus 24 g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 102 (993)
..+.||++|+++||++|+++||+|+|++... +...+...++.+.+........ ..... .. .....+...+...
T Consensus 3 ~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~---~~~~v~~~G~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~ 76 (392)
T TIGR01426 3 IPAHGHVNPTLGVVEELVARGHRVTYATTEE---FAERVEAAGAEFVLYGSALPPPDNPPEN-TE--EEPIDIIEKLLDE 76 (392)
T ss_pred CCccccccccHHHHHHHHhCCCeEEEEeCHH---HHHHHHHcCCEEEecCCcCccccccccc-cC--cchHHHHHHHHHH
Confidence 3568999999999999999999999998754 1111211122222221111100 00000 00 0111111211112
Q ss_pred HHHhHHHHHHHHhcCCCcEEEECC-CchHHHHHHHcCCcEEEEecCchhH-HHH--------HHHhhc---ccchHHHHH
Q 001939 103 RKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWDF-IYA--------EYVMAA---GHHHRSIVW 169 (993)
Q Consensus 103 ~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~~~~-~~~--------~y~~~~---~~~~~~i~~ 169 (993)
....+....+.+++.+||+||.|. .+++..+|+.+|||+|.++...+.. .+. ..+... ......+..
T Consensus 77 ~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (392)
T TIGR01426 77 AEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEEFEEMVSPAGEGSAEEGAIAERGLAEYVA 156 (392)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccccccccccccchhhhhhhccccchhHHHHH
Confidence 223334445667788999999998 5788889999999999874321100 000 000000 000011111
Q ss_pred ---HHHhhcc----c--------cc-eeeecCCCCC--CCCCC-ceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEc
Q 001939 170 ---QIAEDYS----H--------CE-FLIRLPGYCP--MPAFR-DVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNF 230 (993)
Q Consensus 170 ---~l~~~y~----~--------~d-~ll~~p~~~~--~p~~~-~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~ 230 (993)
.+...+. . .+ .+...|..+. .+.++ ++..+|+....+... ..++...+++++||+++
T Consensus 157 ~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp~~~~~~~~----~~~~~~~~~~~~v~vs~ 232 (392)
T TIGR01426 157 RLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTFVGPCIGDRKED----GSWERPGDGRPVVLISL 232 (392)
T ss_pred HHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeEEECCCCCCcccc----CCCCCCCCCCCEEEEec
Confidence 1111111 0 00 1111221111 11222 355666543221111 11222235788999999
Q ss_pred CCCCCh-hh----HHHhhCCCCcEE-EEeCCCCC-----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcC
Q 001939 231 GGQPAG-WK----LKEEYLPSGWKC-LVCGASDS-----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYK 299 (993)
Q Consensus 231 G~~~~~-~~----ll~~l~~~~~~~-vv~G~~~~-----~l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~G 299 (993)
|+.... .. +++.+...++.+ +.+|.... .+++|+.+.+|++. .++|++||+||+|||++|++|++++|
T Consensus 233 Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p~-~~ll~~~~~~I~hgG~~t~~Eal~~G 311 (392)
T TIGR01426 233 GTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADLGELPPNVEVRQWVPQ-LEILKKADAFITHGGMNSTMEALFNG 311 (392)
T ss_pred CccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChhHhccCCCCeEEeCCCCH-HHHHhhCCEEEECCCchHHHHHHHhC
Confidence 996332 12 333444445544 45665432 25889999887764 48999999999999999999999999
Q ss_pred CcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc---------CCCCHHHHHHHHHHHH
Q 001939 300 LPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQET 370 (993)
Q Consensus 300 vP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~ga~~~a~~i~~~ 370 (993)
+|+|++| ...||..|++++++.|+|+.+...+++++.+.++|++++.++.... ...+|+.++|+.|+++
T Consensus 312 ~P~v~~p--~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~~~~~~~aa~~i~~~ 389 (392)
T TIGR01426 312 VPMVAVP--QGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAERLRKMRAEIREAGGARRAADEIEGF 389 (392)
T ss_pred CCEEecC--CcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999999 5679999999999999999999888999999999999998763111 3556778888887776
Q ss_pred H
Q 001939 371 A 371 (993)
Q Consensus 371 ~ 371 (993)
+
T Consensus 390 ~ 390 (392)
T TIGR01426 390 L 390 (392)
T ss_pred h
Confidence 3
No 30
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.90 E-value=1.5e-22 Score=226.58 Aligned_cols=295 Identities=13% Similarity=0.179 Sum_probs=197.1
Q ss_pred EEEEcCccccc----cccccc-ccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccC
Q 001939 498 FVARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELS 572 (993)
Q Consensus 498 ~~~~APGRv~L----~GeH~d-y~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~ 572 (993)
+.++||||||| +|+|.| |++..++.++|+++.++.+++.++.. +.+.+..
T Consensus 4 ~~~~apakiNL~L~i~g~~~dGy~~l~~~~~~i~l~d~v~v~~~~~~~---------------------~~~~~~~---- 58 (312)
T PRK02534 4 YTLIAPAKINLHLEILGDRPDGFHELAMVMQSIDLADRLELRNNGDGT---------------------IRLHCDH---- 58 (312)
T ss_pred EEEEeceEEEeccccCccCCCCCCceEEEEEECCCCCEEEEEECCCCc---------------------EEEEECC----
Confidence 45789999999 799999 99999999999999999998875432 2221100
Q ss_pred CCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHH
Q 001939 573 NRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASV 652 (993)
Q Consensus 573 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~ 652 (993)
..+ .....|++..++..++++++.+. .|++|.|.++||.++|||||||.
T Consensus 59 ----------~~~--------------------~~~~~n~~~~~~~~~~~~~~~~~-~~~~i~i~~~IP~~~GLGSssa~ 107 (312)
T PRK02534 59 ----------PQL--------------------STDDDNLIYRAAQLLRKRFPFAE-GGVDITLEKRIPIGAGLAGGSTD 107 (312)
T ss_pred ----------CCC--------------------CCCchhHHHHHHHHHHHHhCCCC-CCeEEEEecCCCCcCCccHHHHH
Confidence 000 01236788888888777777653 58999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEE-e
Q 001939 653 EVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGI-D 731 (993)
Q Consensus 653 ~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~-d 731 (993)
++|++.+++.+++.++++++++++|.++|. |-.++++||. .+ .....+...+++.|+++.++++ +
T Consensus 108 ~~A~~~al~~~~~~~l~~~~l~~~a~~~g~----------dv~~~~~GG~---~~-~~~~g~~~~~~~~~~~~~~vv~~~ 173 (312)
T PRK02534 108 AAAVLVGLNLLWGLGLTQPELESLAAELGS----------DVPFCIAGGT---QL-CFGRGEILEPLPDLDGLGVVLAKY 173 (312)
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHHHhCC----------CCcEEeECCe---EE-EECCCCEeEECCCCCCcEEEEEEC
Confidence 999999999999999999999999998762 4467889984 22 2222232356666678888886 6
Q ss_pred CCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhh
Q 001939 732 SGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAK 811 (993)
Q Consensus 732 Sgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~ 811 (993)
++..-+|.. .|. .++ +
T Consensus 174 p~~~~~T~~-a~~---------------------------------------------------~~~------------~ 189 (312)
T PRK02534 174 PSLSVSTPW-AYK---------------------------------------------------TYR------------Q 189 (312)
T ss_pred CCCCccHHH-HHH---------------------------------------------------HHh------------h
Confidence 776654421 010 000 1
Q ss_pred cCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhhhhc
Q 001939 812 NIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSAC 891 (993)
Q Consensus 812 ~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~slr~~ 891 (993)
.+|+.++ ..+ .....+.+..|......+|.++ |++.+++.| |+.|+..
T Consensus 190 ~~~~~~~----------~~~---------------~~~~~~~~~~~~~~l~~al~~~----d~~~~~~~~---~n~l~~~ 237 (312)
T PRK02534 190 QFGDTYL----------SDE---------------EDFEQRRQALRSGPLLQAISAK----DPPPIAQLL---HNDLEKV 237 (312)
T ss_pred hcccccc----------cCc---------------ccccccccccchhHHHHhhhcc----CHHHHHHhh---hCchHHH
Confidence 1211110 000 0011122233444566677775 899888866 7888885
Q ss_pred CC-CCchHHHHHHHHH-HHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCcEEee
Q 001939 892 GL-GSDGTDRLVQLVQ-EIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG 969 (993)
Q Consensus 892 ~v-s~~~lD~lv~~a~-~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~ 969 (993)
-+ .+|+++++++.++ + .|++|+.|||+| +|++++.++..+++++.+++++.+.. ....+++.
T Consensus 238 ~~~~~~~i~~~~~~l~~~-----------~Ga~~~~lSGsG--ptv~~l~~~~~~a~~~~~~l~~~~~~---~~~~v~i~ 301 (312)
T PRK02534 238 VLPEYPQVAKLLELLSSL-----------PGCLGTMMSGSG--PTCFALFESQEQAEQALEQVREAFAD---PGLDAWVC 301 (312)
T ss_pred hHhcChHHHHHHHHHHhc-----------cCCCeeEEECcC--cceEEEeCCHHHHHHHHHHHHHHhcc---CceEEEEE
Confidence 33 6788888877665 5 689999999888 99998876543333455555544321 11245554
Q ss_pred --cCCCC
Q 001939 970 --SSPGA 974 (993)
Q Consensus 970 --~~~G~ 974 (993)
...|+
T Consensus 302 ~~~n~G~ 308 (312)
T PRK02534 302 QFISHGI 308 (312)
T ss_pred EecCCCc
Confidence 35565
No 31
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.88 E-value=1.5e-21 Score=215.91 Aligned_cols=171 Identities=15% Similarity=0.163 Sum_probs=128.9
Q ss_pred EEEcCcccccccccccc-cCCe----eeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCC
Q 001939 499 VARAPGRLDVMGGIADY-SGSL----VLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 573 (993)
Q Consensus 499 ~~~APGRv~L~GeH~dy-~gg~----vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 573 (993)
+++|||||||+|+|++| .+|+ +++++|+++.++.+.++++.. +.+.+.
T Consensus 3 ~~~apaKiNL~l~i~~~r~dGyH~l~sl~~~i~l~d~v~i~~~~~~~---------------------i~~~~~------ 55 (293)
T TIGR00154 3 VFPSPAKLNLFLYITGKRPDGYHELQTLMQFLDLGDKIIISVRSDDD---------------------IRLLKG------ 55 (293)
T ss_pred eEeecccEEEEEecCCcCCCCCcceEEEEEEeccCcEEEEEECCCCc---------------------EEEeeC------
Confidence 56899999999999988 6777 999999999999998876543 222211
Q ss_pred CCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCC--CCCCEEEEEEeCCCCCCCCchHHH
Q 001939 574 RGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVR--FEDSISMLVSSAVPEGKGVSSSAS 651 (993)
Q Consensus 574 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~--~~~g~~i~i~s~iP~g~GLgSSAA 651 (993)
.+ ++ +.. .||+.+++..+.+..+.. ...|++|.|.++||.|+|||||||
T Consensus 56 ---~~--~~----------------------~~~--~nlv~~a~~~l~~~~~~~~~~~~~~~i~i~~~iP~~aGLGsssa 106 (293)
T TIGR00154 56 ---DF--DV----------------------PLE--ENLIYRAAQLLKNFANSKIKSLDGANIEIDKNIPMGAGLGGGSS 106 (293)
T ss_pred ---CC--CC----------------------CCC--CcHHHHHHHHHHHHhcccccCCCCeEEEEeccCCCCCCcchhHH
Confidence 00 00 001 289999988877666631 126899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEe
Q 001939 652 VEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGID 731 (993)
Q Consensus 652 ~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~d 731 (993)
.++|++.+++.+++.++++++++++|.++| .|...+++||. .+..... +...+++.++++.+++++
T Consensus 107 ~aaa~l~al~~~~~~~l~~~~l~~la~~lg----------~Dv~~~~~gg~---~~~~g~g-e~~~~l~~~~~~~~vl~~ 172 (293)
T TIGR00154 107 DAATVLVGLNQLWQLGLSLEELAELGLTLG----------ADVPFFVSGHA---AFATGVG-EIITPFEDPPEKWVVIAK 172 (293)
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHhC----------CCcceEEECCe---EEEEecC-cEEEECCCCCCcEEEEEc
Confidence 999999999999999999999999999874 26677889984 3333222 222445445677899998
Q ss_pred CCCccccC
Q 001939 732 SGIRHSVG 739 (993)
Q Consensus 732 Sgv~~~~~ 739 (993)
+++.-+|.
T Consensus 173 p~~~~sT~ 180 (293)
T TIGR00154 173 PHVSISTP 180 (293)
T ss_pred CCCCcChH
Confidence 88776653
No 32
>PLN02451 homoserine kinase
Probab=99.88 E-value=1.8e-21 Score=220.59 Aligned_cols=243 Identities=19% Similarity=0.238 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCC
Q 001939 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (993)
Q Consensus 610 ~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~ 689 (993)
.|.++.++..++++.|... .|++|.|.++||+|+|||||||.++|++.|++.++|.++++++|+++|.++|..++|..
T Consensus 114 ~Nlv~~a~~~~~~~~g~~~-~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~la~~~E~~v~g~h- 191 (370)
T PLN02451 114 RNCAGIAAIATMKLLGIRS-VGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESEAKVSGYH- 191 (370)
T ss_pred cCcHHHHHHHHHHHcCCCC-CCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhchhcCCC-
Confidence 4777777887887778653 69999999999999999999999999999999999999999999999999999888863
Q ss_pred CcchhhH-hhccccceEEEEe-ecCccceeeecCC--CCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccC
Q 001939 690 GVMDQMA-SACGEANKLLAMV-CQPAELLGVVEIP--SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGML 765 (993)
Q Consensus 690 G~mDq~~-~~~Gg~~~~~~i~-~~~~~~~~~v~~p--~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l 765 (993)
+||++ +++||. ++.. ..+.+. ..+++| +++.+++++++...+|+.. |
T Consensus 192 --~Dnva~a~~GG~---v~~~~~~~~~~-~~~~~p~~~~~~~Vlv~P~~~~sT~~a-r---------------------- 242 (370)
T PLN02451 192 --ADNIAPALMGGF---VLIRSYEPLHL-IPLRFPSAKDLFFVLVSPDFEAPTKKM-R---------------------- 242 (370)
T ss_pred --ccchhHhhcCCE---EEEEecCCCeE-EEeecCCCCCeEEEEEcCCCCccHHHH-H----------------------
Confidence 79985 689984 3332 333232 345555 5799999988776665310 0
Q ss_pred cccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccc
Q 001939 766 PQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVR 845 (993)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (993)
..+|+.+.
T Consensus 243 ---------------------------------------------~~lp~~~~--------------------------- 250 (370)
T PLN02451 243 ---------------------------------------------AALPKEIP--------------------------- 250 (370)
T ss_pred ---------------------------------------------HHHhhhcc---------------------------
Confidence 00111000
Q ss_pred cccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHh--hhhhhhcCCCCchHHHHHHHHHHHhhhccccCCCCcccc
Q 001939 846 APVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQC--HYSYSACGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFG 923 (993)
Q Consensus 846 ~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~s--H~slr~~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~G 923 (993)
+..+ +....|+.....+|.++ |++.+|++|+.. |+.++. .++|+++++++.+++ .|++|
T Consensus 251 -~~~~-v~~~~~~~~l~~al~~~----d~~~l~~~m~nD~~~e~~r~--~~~P~l~~l~~~~~~-----------~GA~g 311 (370)
T PLN02451 251 -MKHH-VWNCSQAAALVAAILQG----DAVLLGEALSSDKIVEPTRA--PLIPGMEAVKKAALE-----------AGAYG 311 (370)
T ss_pred -hhhH-HHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhHHHHh--hhCccHHHHHHHHHH-----------CCCeE
Confidence 0001 11233455666778775 899999999865 666665 379999999999987 69999
Q ss_pred eeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCcEEee--cCCCCcc
Q 001939 924 AKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG--SSPGAGK 976 (993)
Q Consensus 924 akltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~--~~~G~~~ 976 (993)
++|||+| .|++++.+++..++++.+++++.|++..+..+.+++. ...|+..
T Consensus 312 a~mSGSG--ptvfal~~~~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~d~~Ga~v 364 (370)
T PLN02451 312 CTISGAG--PTAVAVIDDEEKGEEVGERMVEAFRKAGNLKATASVKKLDRVGARL 364 (370)
T ss_pred EEEEccc--hheEEEEcCHHHHHHHHHHHHHHHHHhcCCCceEEEeccCCCCeEE
Confidence 9999998 7888877654334577888888887666677888876 4667643
No 33
>PLN02208 glycosyltransferase family protein
Probab=99.88 E-value=3.1e-20 Score=215.85 Aligned_cols=338 Identities=13% Similarity=0.122 Sum_probs=197.6
Q ss_pred cCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc--ccccccCCCceEEeeeecc--CCccccCccccChHHHHHHHHH
Q 001939 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF--VFTSEIQSPRLFIRKVLLD--CGAVQADALTVDRLASLEKYSE 97 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~--~~~~~i~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~ 97 (993)
++.++.||++|++.||+.|..+|++|+|+++.... +.......+.+.+...... .|+........+.. ..+..
T Consensus 10 ~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~---~~l~~ 86 (442)
T PLN02208 10 FPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIP---ISMDN 86 (442)
T ss_pred ecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchh---HHHHH
Confidence 57899999999999999999999999999865311 1000000011222221111 12211000000110 11111
Q ss_pred HhhccHHHhHHHHHHHHhcCCCcEEEECCCchHHHHHHHcCCcEEEEecCc-hhHHHHHH--------Hhhccc------
Q 001939 98 TAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFS-WDFIYAEY--------VMAAGH------ 162 (993)
Q Consensus 98 ~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~a~laA~~~gIP~V~i~~~~-~~~~~~~y--------~~~~~~------ 162 (993)
.+............+++++.+||+||+|+.+++..+|+.+|||.+.+...+ +...+..+ .+..+.
T Consensus 87 ~~~~~~~~~~~~l~~~L~~~~~~cVV~D~~~wa~~vA~e~giP~~~f~~~~a~~~~~~~~~~~~~~~~~pglp~~~~~~~ 166 (442)
T PLN02208 87 LLSEALDLTRDQVEAAVRALRPDLIFFDFAQWIPEMAKEHMIKSVSYIIVSATTIAHTHVPGGKLGVPPPGYPSSKVLFR 166 (442)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeEEEECCcHhHHHHHHHhCCCEEEEEhhhHHHHHHHccCccccCCCCCCCCCcccccC
Confidence 111122233344466778889999999987788889999999998773221 11111000 000000
Q ss_pred --c----------hHHHHHHHHhhccccceeeecCCCC---------CCCCCCceeecCccccc-C--CcChHHHHHHhC
Q 001939 163 --H----------HRSIVWQIAEDYSHCEFLIRLPGYC---------PMPAFRDVIDVPLVVRR-L--HKSRKEVRKELG 218 (993)
Q Consensus 163 --~----------~~~i~~~l~~~y~~~d~ll~~p~~~---------~~p~~~~v~~vp~~~~~-~--~~~~~~~r~~l~ 218 (993)
+ +..+..++...+..++.++.-++.. ..+..+++..||+.... . ..+++++.++++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~wLd 246 (442)
T PLN02208 167 ENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPDTSKPLEEQWSHFLS 246 (442)
T ss_pred HHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcCCCCCCHHHHHHHHh
Confidence 0 0111111112233344333222211 01112467778886432 2 234677889998
Q ss_pred CCCCCcEEEEEcCCCCC-hhh-HHH---hh--CCCCcEEEEe---CCCC--CCCC---------CCeEECCCCCCHH--H
Q 001939 219 IEDDVKLLILNFGGQPA-GWK-LKE---EY--LPSGWKCLVC---GASD--SQLP---------PNFIKLPKDAYTP--D 275 (993)
Q Consensus 219 ~~~~~~~Vlvs~G~~~~-~~~-ll~---~l--~~~~~~~vv~---G~~~--~~l~---------~nv~~~~~~~~~p--d 275 (993)
..+++.+|||||||... ..+ +.+ .+ ....+.+++- |... ..+| .|+.+. .|+| +
T Consensus 247 ~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~---~W~PQ~~ 323 (442)
T PLN02208 247 GFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWG---GWVQQPL 323 (442)
T ss_pred cCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEee---ccCCHHH
Confidence 76678899999999865 222 222 22 2334455543 1101 1255 566664 5666 8
Q ss_pred HHhh--cCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cCcEEEEecCC---CChhhHHHHHHHHHhC
Q 001939 276 FMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQGGVEMIRRD---LLTGHWKPYLERAISL 349 (993)
Q Consensus 276 lL~~--adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~-~G~g~~l~~~~---~~~~~l~~~l~~ll~~ 349 (993)
+|+| +.+||||||+||++|++++|||||++| .+.||+.|++++++ .|+|+.++..+ ++.+.+..+|++++++
T Consensus 324 iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P--~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~ 401 (442)
T PLN02208 324 ILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIP--FLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDK 401 (442)
T ss_pred HhcCCccCeEEccCCchHHHHHHHcCCCEEecC--cchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcC
Confidence 9988 568999999999999999999999999 78999999998776 89999997655 8899999999999976
Q ss_pred CCCccCCCCHHHHHHHHHHHH
Q 001939 350 KPCYEGGINGGEVAAHILQET 370 (993)
Q Consensus 350 ~~~~~~~~~ga~~~a~~i~~~ 370 (993)
+. ......++-|+.|.+.
T Consensus 402 ~~---e~g~~~r~~~~~~~~~ 419 (442)
T PLN02208 402 DS---DLGKLVRSNHTKLKEI 419 (442)
T ss_pred Cc---hhHHHHHHHHHHHHHH
Confidence 51 1122344444555544
No 34
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.87 E-value=1.3e-20 Score=202.96 Aligned_cols=237 Identities=20% Similarity=0.275 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCC
Q 001939 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (993)
Q Consensus 610 ~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~ 689 (993)
.|.++.++..+++++|.+. +++|.++++||.|+|||||||.+||.+.|+|++++.+++++++.+++...|+|+
T Consensus 58 ~n~~~~~~~~~~~~~~~~~--~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~EgHp----- 130 (299)
T COG0083 58 ENLVYQAALKFLEALGIEA--GVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEGHP----- 130 (299)
T ss_pred ceeHHHHHHHHHHHhCCCc--cEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCC-----
Confidence 3466777888888888874 499999999999999999999999999999999999999999999999999864
Q ss_pred Ccchh-hHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCccc
Q 001939 690 GVMDQ-MASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQS 768 (993)
Q Consensus 690 G~mDq-~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~ 768 (993)
|| ++|++||. .+....+.-....+++|.++.++++..+.+-+|..
T Consensus 131 ---DNVapa~lGG~---~l~~~~~~~~~~~v~~~~~~~~v~~iP~~e~sT~~---------------------------- 176 (299)
T COG0083 131 ---DNVAPAVLGGL---VLVEEESGIISVKVPFPSDLKLVVVIPNFEVSTAE---------------------------- 176 (299)
T ss_pred ---chHHHHhhCCE---EEEeecCCceEEEccCCcceEEEEEeCCccccHHH----------------------------
Confidence 44 47999993 22222121122456777899999986544333210
Q ss_pred CCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCccccccccc
Q 001939 769 LPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPV 848 (993)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 848 (993)
-| +.||+.++ .
T Consensus 177 ----------------------------aR------------~vLP~~~~-----------------------------~ 187 (299)
T COG0083 177 ----------------------------AR------------KVLPKSYS-----------------------------R 187 (299)
T ss_pred ----------------------------HH------------HhccccCC-----------------------------H
Confidence 11 35666542 3
Q ss_pred ccccchhhHHHHHHHHHHccCChhHHHHHHHHHHH-hhhhhhhcCCCCchHHHHHHHHHHHhhhccccCCCCcccceeee
Q 001939 849 CHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQ-CHYSYSACGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKIT 927 (993)
Q Consensus 849 ~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~-sH~slr~~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~Gaklt 927 (993)
..++....|+..+..+|.++ |.+.+..+|++ -|+.||.- ..|+++++.+.+.+ .|+||+-++
T Consensus 188 ~daV~n~s~~a~lv~al~~~----~~~l~~~~~~D~ihepyR~~--L~P~~~~v~~~a~~-----------~gA~g~~lS 250 (299)
T COG0083 188 KDAVFNLSRAALLVAALLEG----DPELLRAMMKDVIHEPYRAK--LVPGYAEVREAALE-----------AGALGATLS 250 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcC----CHHHHHHHhccccchhhhhh--hCccHHHHHHHHhh-----------CCceEEEEe
Confidence 45677788899999999986 77777777776 59999995 47999999988887 799999999
Q ss_pred ccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCcEEee--cCCCCccee
Q 001939 928 GGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG--SSPGAGKFG 978 (993)
Q Consensus 928 GaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~--~~~G~~~~~ 978 (993)
|+| .|++++.++. +. +.+..+.+.++.+ +....++++ .++|+..++
T Consensus 251 GAG--PTi~al~~~~-~~-e~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~~v~ 298 (299)
T COG0083 251 GAG--PTVFALADES-DA-EKAAALLEELYEQ-GIKGRVHILALDSDGARVVE 298 (299)
T ss_pred cCC--CeEEEEeccc-hh-hHHHHHHHHHHHh-CCcceEEEEeecCCcceEec
Confidence 999 9999998766 32 4455555565545 666777766 588876543
No 35
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.87 E-value=4.1e-20 Score=211.70 Aligned_cols=358 Identities=17% Similarity=0.179 Sum_probs=210.2
Q ss_pred EEcCccccccccccccc-CCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCce
Q 001939 500 ARAPGRLDVMGGIADYS-GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTF 578 (993)
Q Consensus 500 ~~APGRv~L~GeH~dy~-gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~ 578 (993)
++|||||-|.||.++.. |..++-.|++.++|+.+++..... ..+ ...+.|.|.. |.+. .+
T Consensus 2 ~sAPGKlliAGgYlVLep~y~aiVval~~r~~a~v~~~~~~~-~~~--------------~~~i~v~SpQ--f~~~--~~ 62 (454)
T TIGR01219 2 ASAPGKVLMAGGYLVLDKPYAGLVLGLNARFYAIVKPINEEV-GAW--------------KWDVRVKSPQ--FSDR--EW 62 (454)
T ss_pred cccCceEEEecceEEecCCCcEEEEEecceEEEEEeeccccc-ccC--------------cceEEEeCCC--CCCC--ce
Confidence 68999999999999976 778899999999999998764321 111 1245666542 2222 12
Q ss_pred eccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHH---HhCCC---CCCCEEEEEEeCC------------
Q 001939 579 DMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMT---ELGVR---FEDSISMLVSSAV------------ 640 (993)
Q Consensus 579 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~---~~g~~---~~~g~~i~i~s~i------------ 640 (993)
.+.++. +...+..... -....... ..|+..++...++ ..+.. + .+++|+|.|+.
T Consensus 63 ~y~~~~---~~~~~~~~~~---~~~~~~~~-n~fv~~ai~~~~~y~~~~~~~~~~l-~~~~itI~sd~d~ySq~~~~~~~ 134 (454)
T TIGR01219 63 LYKISL---NHLTLQSVSA---SDSRNPFV-NPFIQYAIAAVHLYFDKESLHKLLL-QGLDITILGDNAYYSQPESLGTL 134 (454)
T ss_pred EEEEec---CCccceeecc---cccCCCCC-ChHHHHHHHHHHHHHHhcccccccc-CceEEEEEecCCcccccchhccc
Confidence 222211 0000000000 00001112 3466666654433 22222 3 58999998877
Q ss_pred -------C--------CCCCCchHHHHHHHHHHHHHHHhCCCC-------------CHHHHHHHHHHHhccccCC-CCCc
Q 001939 641 -------P--------EGKGVSSSASVEVASMSAIAAAHGLNI-------------HPRDLALLCQKVENHIVGA-PCGV 691 (993)
Q Consensus 641 -------P--------~g~GLgSSAA~~Va~~~al~~~~g~~l-------------~~~el~~la~~~E~~~~G~-~~G~ 691 (993)
+ .+.|||||||++||++.||+.+++..+ +++.+.++|+.+|...+|+ .||+
T Consensus 135 ~~~~~f~~~~~~~~e~~K~GLGSSAAvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG~ 214 (454)
T TIGR01219 135 APFASITFNAAEKPEVAKTGLGSSAAMTTALVAALLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGF 214 (454)
T ss_pred ccccccccccccCCCccccCccHHHHHHHHHHHHHHHHhCCcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCch
Confidence 2 268999999999999999999999877 7789999999999999995 6884
Q ss_pred chhhHhhccccceEEEEeecCc----------------------------cceeeecCCCCeEEEEEeCCCccccCCCCc
Q 001939 692 MDQMASACGEANKLLAMVCQPA----------------------------ELLGVVEIPSHIRFWGIDSGIRHSVGGADY 743 (993)
Q Consensus 692 mDq~~~~~Gg~~~~~~i~~~~~----------------------------~~~~~v~~p~~~~~ll~dSgv~~~~~~~~y 743 (993)
|.++++||| +++..|.+. ++ +++.+|+++++++.|||.+++|.
T Consensus 215 -DvAaavyGg---i~Y~rfd~~~l~~~~~~~~~~~~~~~L~~~v~~~W~~~i-~~l~lP~~l~Llvgdtg~~ssT~---- 285 (454)
T TIGR01219 215 -DVSAAVYGS---QRYRRFSPELISFLQVAITGLPLNEVLGTIVKGKWDNKR-TEFSLPPLMNLFMGDPGGGSSTP---- 285 (454)
T ss_pred -hhhhhhcCc---eEEEecChhhhhhhhccccccchhhhHHHHhccCCCCce-eeccCCCCCEEEEEcCCCCcCcH----
Confidence 999999999 355554432 11 25667789999999999999885
Q ss_pred cchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHh--hhhhHhhcCChHHHHHHHhhcCCccchhhh
Q 001939 744 GSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAE--ASLDYLCNLSPHRFEALYAKNIPESIVGEE 821 (993)
Q Consensus 744 ~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~ 821 (993)
.+|.++.+.. +.+ .+.-+..++.+... .....|..+.
T Consensus 286 -----------~lV~~V~~~~--~~~--------p~~s~~i~~~l~~aN~~~~~~l~~l~-------------------- 324 (454)
T TIGR01219 286 -----------SMVGKVKKWQ--MSD--------PEESRENWQNLSDANLELETKLNDLS-------------------- 324 (454)
T ss_pred -----------HHHHHHHHHH--HHC--------HHHHHHHHHHHHHHHHHHHHHHHhhh--------------------
Confidence 3455442110 000 00000011111100 0000111000
Q ss_pred hhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHcc----CChhHHHHHHHHHHHhhhhhhhc------
Q 001939 822 FSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAA----ASDDQLTSLGELLYQCHYSYSAC------ 891 (993)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~----~~~~~l~~lG~Lm~~sH~slr~~------ 891 (993)
+...++++ .| . ...+.|..+ ....++..+.+.|.++-..||.+
T Consensus 325 --~~~~~~~~---------~y---~-------------~~~~~l~~~~~~~~~~~~~~~i~~~i~~~R~~Lr~~~~~sgv 377 (454)
T TIGR01219 325 --KLAKDHWD---------VY---L-------------RVIKVLTSEKCVLHATEELLEAREAMLRIRRLMRQITEEASV 377 (454)
T ss_pred --hhhccccc---------hh---h-------------hhhhhhccccchhcccccHHHHHHHHHHHHHHHHHhhHhcCC
Confidence 00000000 00 0 001111110 00015666666677766666653
Q ss_pred CCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCcEEeecC
Q 001939 892 GLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEGSS 971 (993)
Q Consensus 892 ~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~~~ 971 (993)
.+-.|++-+|++.+.++ +|++|++..|||+|-|+++|..++. +.++++.++++ +.|+.|.-.....
T Consensus 378 ~IEp~~~t~Lld~~~~~----------~Gvl~a~vpGAGGgDa~~~l~~~~~---~~~~~~~~~W~-~~~V~pL~v~~~~ 443 (454)
T TIGR01219 378 DIEPESQTQLLDSTMSL----------EGVLLAGVPGAGGFDAIFAITLGDV---DSGTKLTQAWS-SHNVLALDVREAP 443 (454)
T ss_pred cccCHHHHHHHHHHhhc----------CCeeEeecCCCCccceEEEEecCCh---HHHHHHHHHHh-hCCEEEEeccccC
Confidence 34578888999988874 7999999999999999998876544 35677777775 4565553332234
Q ss_pred CCCc
Q 001939 972 PGAG 975 (993)
Q Consensus 972 ~G~~ 975 (993)
.|++
T Consensus 444 ~G~~ 447 (454)
T TIGR01219 444 HGVC 447 (454)
T ss_pred Cccc
Confidence 4543
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.87 E-value=5.2e-20 Score=196.59 Aligned_cols=333 Identities=21% Similarity=0.254 Sum_probs=208.9
Q ss_pred cEEEEEec-CCCCcccHHHHHHHHHHHHHC--CCeEEEEeCCC---CcccccccCCCceEEeee-eccCCccccCccccC
Q 001939 15 HLVFAYYV-TGHGFGHATRVVEVVRNLISA--GHDVHVVTGAP---DFVFTSEIQSPRLFIRKV-LLDCGAVQADALTVD 87 (993)
Q Consensus 15 ~~~Il~~v-~g~G~GH~~ralaLA~aL~~~--Gh~V~~v~~~~---~~~~~~~i~~~~~~~~~~-~~~~g~~~~~~~~~~ 87 (993)
+++|+||+ ...|.||+.||+.+|++|.+. |.+|+++++.+ .|.....+ ..+++++. ..+.|.........+
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gV--d~V~LPsl~k~~~G~~~~~d~~~~ 86 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGV--DFVKLPSLIKGDNGEYGLVDLDGD 86 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccC--ceEecCceEecCCCceeeeecCCC
Confidence 44666666 478999999999999999999 99999999875 33332222 23344442 123343321112222
Q ss_pred hHHHHHHHHHHhhccHHHhHHHHHHHHhcCCCcEEEECCCchHHH------HHHH--cCCcE-EEEecCchhHHHHHHHh
Q 001939 88 RLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACR------AAAD--AGIRS-VCVTNFSWDFIYAEYVM 158 (993)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~a~l------aA~~--~gIP~-V~i~~~~~~~~~~~y~~ 158 (993)
+..+.++ +..++ .+.++.+|||++|+|..|.|+. ++.. .+-+. +.+++... +......
T Consensus 87 ----l~e~~~~----Rs~li---l~t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr~i~D--~p~~~~~ 153 (400)
T COG4671 87 ----LEETKKL----RSQLI---LSTAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLRSIRD--IPQELEA 153 (400)
T ss_pred ----HHHHHHH----HHHHH---HHHHHhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehHhhhh--chhhhcc
Confidence 2233321 22223 4557899999999999777643 2222 23233 33333220 0000000
Q ss_pred hcccchHHHHHHHHhhccccceee-ecC-CCCCCCCC-------CceeecCccccc-CC-cChHHHHHHhCCCCCCcEEE
Q 001939 159 AAGHHHRSIVWQIAEDYSHCEFLI-RLP-GYCPMPAF-------RDVIDVPLVVRR-LH-KSRKEVRKELGIEDDVKLLI 227 (993)
Q Consensus 159 ~~~~~~~~i~~~l~~~y~~~d~ll-~~p-~~~~~p~~-------~~v~~vp~~~~~-~~-~~~~~~r~~l~~~~~~~~Vl 227 (993)
+.........+...|.. .++ +-| ++.+...| .+++++|...+. +. ..+.. ..++...|+
T Consensus 154 --~w~~~~~~~~I~r~yD~--V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~~~p~~------~~pE~~~Il 223 (400)
T COG4671 154 --DWRRAETVRLINRFYDL--VLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHLPLPPH------EAPEGFDIL 223 (400)
T ss_pred --chhhhHHHHHHHHhheE--EEEecCccccChhhcCCccHhhhhheeEeEEeeccCcCCCCCCc------CCCccceEE
Confidence 00001112223333322 122 111 11111111 245667765221 10 11111 114566899
Q ss_pred EEcCCCCChhhHHHh-----hCCCCc---EEEEeCCCCCC---------CC--CCeEECCCCCCHHHHHhhcCEEEecCC
Q 001939 228 LNFGGQPAGWKLKEE-----YLPSGW---KCLVCGASDSQ---------LP--PNFIKLPKDAYTPDFMAASDCMLGKIG 288 (993)
Q Consensus 228 vs~G~~~~~~~ll~~-----l~~~~~---~~vv~G~~~~~---------l~--~nv~~~~~~~~~pdlL~~adl~It~~G 288 (993)
|+.||...+.+++.. ...+++ -++++|+.-|. .+ +++.+..|..++-++|+.|+.+|+.+|
T Consensus 224 vs~GGG~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~vVSm~G 303 (400)
T COG4671 224 VSVGGGADGAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARLVVSMGG 303 (400)
T ss_pred EecCCChhhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhheeeeccc
Confidence 999988777666552 111222 45778998763 24 789999999998899999999999999
Q ss_pred hhHHHHHHHcCCcEEEEeCC-CCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCC--ccCCCCHHHHHHH
Q 001939 289 YGTVSEALAYKLPFVFVRRD-YFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPC--YEGGINGGEVAAH 365 (993)
Q Consensus 289 ~~Tv~Eal~~GvP~l~ip~~-~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~--~~~~~~ga~~~a~ 365 (993)
|||+||.+++|+|.|+||+. +..||...|++++++|..-++.+++++++.+.++|..++..|+. ..-..+|+..++.
T Consensus 304 YNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P~~~~~~L~L~G~~~~a~ 383 (400)
T COG4671 304 YNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARPSPSKPHLDLEGLEHIAR 383 (400)
T ss_pred chhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCCCCCccccCchhhHhHHH
Confidence 99999999999999999975 34589999999999999999999999999999999999876522 2268899999999
Q ss_pred HHHHHHc
Q 001939 366 ILQETAI 372 (993)
Q Consensus 366 ~i~~~~~ 372 (993)
++.+.+.
T Consensus 384 ~l~e~L~ 390 (400)
T COG4671 384 ILAELLS 390 (400)
T ss_pred HHHHHhh
Confidence 9988764
No 37
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.84 E-value=5.1e-19 Score=209.19 Aligned_cols=323 Identities=14% Similarity=0.154 Sum_probs=178.1
Q ss_pred cCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-ccccccC-----CCc--eEEeeeecc---CCcccc-Cccc-cC-
Q 001939 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEIQ-----SPR--LFIRKVLLD---CGAVQA-DALT-VD- 87 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~-~~~~~i~-----~~~--~~~~~~~~~---~g~~~~-~~~~-~~- 87 (993)
++.+|.||++|++.||+.|..+|++|+|+++.... ....... .+. +.+....+. .|.... .... .+
T Consensus 11 vp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~~~~~~~ 90 (482)
T PLN03007 11 FPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCENVDFITS 90 (482)
T ss_pred ECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccccccccc
Confidence 57889999999999999999999999999876421 0011000 010 011111111 111100 0000 00
Q ss_pred --hHHHHHHHHHHhhccHHHhHHHHHHHHhcCCCcEEEECC-CchHHHHHHHcCCcEEEEecCc-hh----H-HHHHH--
Q 001939 88 --RLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFS-WD----F-IYAEY-- 156 (993)
Q Consensus 88 --~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~-~~----~-~~~~y-- 156 (993)
.... ..+...+......+.....++++..+||+||+|. .+|+..+|+.+|||.+.+...+ +. . .+..+
T Consensus 91 ~~~~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~ 169 (482)
T PLN03007 91 NNNDDS-GDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCIRVHKPQ 169 (482)
T ss_pred ccccch-HHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHHHhcccc
Confidence 0000 0111111111223334445667777999999998 7899999999999999762211 10 0 00000
Q ss_pred -----------Hhhccc-------------chHHH---HHHHHhhccccceeeecCCCC---C----CCCC--CceeecC
Q 001939 157 -----------VMAAGH-------------HHRSI---VWQIAEDYSHCEFLIRLPGYC---P----MPAF--RDVIDVP 200 (993)
Q Consensus 157 -----------~~~~~~-------------~~~~i---~~~l~~~y~~~d~ll~~p~~~---~----~p~~--~~v~~vp 200 (993)
.+..+. ....+ ...+.+....++.++.-.+.. . ++.. ..+..||
T Consensus 170 ~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~~~~~~~VG 249 (482)
T PLN03007 170 KKVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFVAKRAWHIG 249 (482)
T ss_pred cccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhccCCCEEEEc
Confidence 010000 00000 011111122222222111100 0 1111 2355677
Q ss_pred ccccc----------CC---cChHHHHHHhCCCCCCcEEEEEcCCCCCh-----hhHHHhhCCCCcEE-EEeCCC-C---
Q 001939 201 LVVRR----------LH---KSRKEVRKELGIEDDVKLLILNFGGQPAG-----WKLKEEYLPSGWKC-LVCGAS-D--- 257 (993)
Q Consensus 201 ~~~~~----------~~---~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-----~~ll~~l~~~~~~~-vv~G~~-~--- 257 (993)
|.... .+ ..+.++.++++..+++++|||||||.... .++...+...++.+ .+++.. .
T Consensus 250 Pl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~ 329 (482)
T PLN03007 250 PLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGE 329 (482)
T ss_pred cccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccc
Confidence 64211 10 12355678887666788999999997542 23333443334432 233321 0
Q ss_pred --CCC---------CCCeEECCCCCCHH--HHHhhc--CEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHH-
Q 001939 258 --SQL---------PPNFIKLPKDAYTP--DFMAAS--DCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLE- 321 (993)
Q Consensus 258 --~~l---------~~nv~~~~~~~~~p--dlL~~a--dl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~- 321 (993)
..+ +.|+.+.+ |+| ++|+|+ .+||||||+||++||+++|||||++| .+.||+.||++++
T Consensus 330 ~~~~lp~~~~~r~~~~g~~v~~---w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P--~~~DQ~~na~~~~~ 404 (482)
T PLN03007 330 KEEWLPEGFEERTKGKGLIIRG---WAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWP--VGAEQFYNEKLVTQ 404 (482)
T ss_pred hhhcCCHHHHHHhccCCEEEec---CCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeecc--chhhhhhhHHHHHH
Confidence 013 44777754 555 899996 55999999999999999999999999 7899999999886
Q ss_pred --HcCcEEEE------ecCCCChhhHHHHHHHHHhCC
Q 001939 322 --FYQGGVEM------IRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 322 --~~G~g~~l------~~~~~~~~~l~~~l~~ll~~~ 350 (993)
+.|+++.. +...++.+.+.++|++++.++
T Consensus 405 ~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 405 VLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGE 441 (482)
T ss_pred hhcceeEeccccccccccCcccHHHHHHHHHHHhcCc
Confidence 45555432 335678999999999999764
No 38
>PLN02210 UDP-glucosyl transferase
Probab=99.84 E-value=1.9e-18 Score=202.12 Aligned_cols=329 Identities=16% Similarity=0.166 Sum_probs=188.3
Q ss_pred cCCCCcccHHHHHHHHHH--HHHCCCeEEEEeCCCCcccccccC--CCceEEeeeeccCCccccCccccChHHHHHHHHH
Q 001939 22 VTGHGFGHATRVVEVVRN--LISAGHDVHVVTGAPDFVFTSEIQ--SPRLFIRKVLLDCGAVQADALTVDRLASLEKYSE 97 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~a--L~~~Gh~V~~v~~~~~~~~~~~i~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 97 (993)
++.++.||++|++.||+. |..+|+.|+|+++........... ...+.+.. ...|+.. ....+. ..+..
T Consensus 14 ~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~--~~~glp~--~~~~~~----~~~~~ 85 (456)
T PLN02210 14 VTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVF--FSDGLPK--DDPRAP----ETLLK 85 (456)
T ss_pred eCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEE--CCCCCCC--CcccCH----HHHHH
Confidence 578899999999999999 558999999998764110001111 11222221 1112211 110111 11221
Q ss_pred HhhccHHHhHHHHHHHHhcCCCcEEEECC-CchHHHHHHHcCCcEEEEecCc-hhH-HHHHH------------------
Q 001939 98 TAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFS-WDF-IYAEY------------------ 156 (993)
Q Consensus 98 ~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~-~~~-~~~~y------------------ 156 (993)
.+ .........+++++.+||+||+|. .+|+..+|+.+|||.+.+...+ ..+ .+..+
T Consensus 86 ~~---~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (456)
T PLN02210 86 SL---NKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLEDLNQTVE 162 (456)
T ss_pred HH---HHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcccccCCeee
Confidence 11 111123345667777899999997 7899999999999998762211 110 00000
Q ss_pred Hhhccc-ch---------------HHHHHHHHhhccccceeeecCCCCC-------CCCCCceeecCccccc----CC--
Q 001939 157 VMAAGH-HH---------------RSIVWQIAEDYSHCEFLIRLPGYCP-------MPAFRDVIDVPLVVRR----LH-- 207 (993)
Q Consensus 157 ~~~~~~-~~---------------~~i~~~l~~~y~~~d~ll~~p~~~~-------~p~~~~v~~vp~~~~~----~~-- 207 (993)
.|..+. .. ......+......++.++.-++... +...+++..|||.... ..
T Consensus 163 ~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~~VGPl~~~~~~~~~~~ 242 (456)
T PLN02210 163 LPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADLKPVIPIGPLVSPFLLGDDEE 242 (456)
T ss_pred CCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEEEEcccCchhhcCcccc
Confidence 010000 00 0011111111222333332222111 0112356678876420 00
Q ss_pred -----------cChHHHHHHhCCCCCCcEEEEEcCCCCCh-hh----HHHhhCCCCcEEE-EeCCCC----CC-----C-
Q 001939 208 -----------KSRKEVRKELGIEDDVKLLILNFGGQPAG-WK----LKEEYLPSGWKCL-VCGASD----SQ-----L- 260 (993)
Q Consensus 208 -----------~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-~~----ll~~l~~~~~~~v-v~G~~~----~~-----l- 260 (993)
....++.++++..+++++||+||||.... .+ +...+...++.++ +++... .. .
T Consensus 243 ~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~~~~~~~~ 322 (456)
T PLN02210 243 ETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVK 322 (456)
T ss_pred cccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCccccchhhHHhhcc
Confidence 01223556777656678999999997642 22 3334444455333 333211 11 1
Q ss_pred CCCeEECCCCCCHH--HHHhhcC--EEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cCcEEEEecC---
Q 001939 261 PPNFIKLPKDAYTP--DFMAASD--CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQGGVEMIRR--- 332 (993)
Q Consensus 261 ~~nv~~~~~~~~~p--dlL~~ad--l~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~-~G~g~~l~~~--- 332 (993)
+++..+. +|+| ++|+|++ +||||||+||++|++++|||||++| .+.||+.||+++++ .|+|+.+...
T Consensus 323 ~~~g~v~---~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P--~~~DQ~~na~~~~~~~g~G~~l~~~~~~ 397 (456)
T PLN02210 323 EGQGVVL---EWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYP--SWTDQPIDARLLVDVFGIGVRMRNDAVD 397 (456)
T ss_pred CCCeEEE---ecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecc--cccccHHHHHHHHHHhCeEEEEeccccC
Confidence 3555554 4666 7999976 9999999999999999999999999 78999999999997 8999998643
Q ss_pred -CCChhhHHHHHHHHHhCCCCccCCCCHHHHHHHHHHHHH
Q 001939 333 -DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (993)
Q Consensus 333 -~~~~~~l~~~l~~ll~~~~~~~~~~~ga~~~a~~i~~~~ 371 (993)
.++.+++.++|++++.++ .....++-|..|.+.+
T Consensus 398 ~~~~~~~l~~av~~~m~~~-----~g~~~r~~a~~l~~~a 432 (456)
T PLN02210 398 GELKVEEVERCIEAVTEGP-----AAADIRRRAAELKHVA 432 (456)
T ss_pred CcCCHHHHHHHHHHHhcCc-----hHHHHHHHHHHHHHHH
Confidence 478899999999999664 1123344455555543
No 39
>PLN00414 glycosyltransferase family protein
Probab=99.83 E-value=1.9e-18 Score=201.13 Aligned_cols=342 Identities=16% Similarity=0.162 Sum_probs=192.7
Q ss_pred cCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc--ccccccCCCceEEeeeecc--CCccccCccccChHHHHHHHHH
Q 001939 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF--VFTSEIQSPRLFIRKVLLD--CGAVQADALTVDRLASLEKYSE 97 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~--~~~~~i~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~ 97 (993)
++.++.||++|++.||+.|..+|++|+|+++.... +.......+.+.+...... .|+........+..... ..
T Consensus 10 vPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~~~---~~ 86 (446)
T PLN00414 10 YPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPNST---KK 86 (446)
T ss_pred ecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchhhH---HH
Confidence 57889999999999999999999999999865311 1000000111222111100 12211000000111000 11
Q ss_pred HhhccHHHhHHHHHHHHhcCCCcEEEECCCchHHHHHHHcCCcEEEEecCc-hhH-HH----HH--H-Hhhccc------
Q 001939 98 TAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFS-WDF-IY----AE--Y-VMAAGH------ 162 (993)
Q Consensus 98 ~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~a~laA~~~gIP~V~i~~~~-~~~-~~----~~--y-~~~~~~------ 162 (993)
.+......+.....++++..+||+||+|+.+|+.-+|+.+|||.+.+...+ ... .+ .. . .+..+.
T Consensus 87 ~~~~a~~~l~~~l~~~L~~~~p~cVV~D~~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~~~~~~pg~p~~~~~~~ 166 (446)
T PLN00414 87 PIFDAMDLLRDQIEAKVRALKPDLIFFDFVHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAELGFPPPDYPLSKVALR 166 (446)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEECCchhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhhcCCCCCCCCCCcCcCc
Confidence 111112222233345667778999999998899999999999998873322 100 00 00 0 010000
Q ss_pred chH----H-------HHHHHHhhccccceeeecCCCCC-------CCC-C-CceeecCcccccCC-----cChHHHHHHh
Q 001939 163 HHR----S-------IVWQIAEDYSHCEFLIRLPGYCP-------MPA-F-RDVIDVPLVVRRLH-----KSRKEVRKEL 217 (993)
Q Consensus 163 ~~~----~-------i~~~l~~~y~~~d~ll~~p~~~~-------~p~-~-~~v~~vp~~~~~~~-----~~~~~~r~~l 217 (993)
..+ . ......+....++.++.-++... +.. . +.+..|||...... ....++-++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WL 246 (446)
T PLN00414 167 GHDANVCSLFANSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWL 246 (446)
T ss_pred hhhcccchhhcccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCcccccCcccHHHHHHHH
Confidence 000 0 00011122223333332222110 000 1 24667887643111 1123567889
Q ss_pred CCCCCCcEEEEEcCCCCCh--hhHHH---hhC--CCCcEEEEe---CCCC--CCCCCCeEEC----CC--CCCHH--HHH
Q 001939 218 GIEDDVKLLILNFGGQPAG--WKLKE---EYL--PSGWKCLVC---GASD--SQLPPNFIKL----PK--DAYTP--DFM 277 (993)
Q Consensus 218 ~~~~~~~~Vlvs~G~~~~~--~~ll~---~l~--~~~~~~vv~---G~~~--~~l~~nv~~~----~~--~~~~p--dlL 277 (993)
+..+++.+|||||||.... .++.+ .|. ..++.+++- |... ..+|+|+... |. ..|+| ++|
T Consensus 247 D~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL 326 (446)
T PLN00414 247 NGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLIL 326 (446)
T ss_pred hcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHh
Confidence 8877889999999998653 23332 232 233344443 2111 1256554321 11 15777 799
Q ss_pred hhc--CEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHH-HcCcEEEEecC---CCChhhHHHHHHHHHhCCC
Q 001939 278 AAS--DCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLE-FYQGGVEMIRR---DLLTGHWKPYLERAISLKP 351 (993)
Q Consensus 278 ~~a--dl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~-~~G~g~~l~~~---~~~~~~l~~~l~~ll~~~~ 351 (993)
+|+ ++||||||+||++|++++|||||++| .+.||+.||++++ ..|+|+.+..+ .++.+.+..++++++.++.
T Consensus 327 ~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P--~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~ 404 (446)
T PLN00414 327 SHPSVGCFVNHCGFGSMWESLVSDCQIVFIP--QLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDS 404 (446)
T ss_pred cCCccceEEecCchhHHHHHHHcCCCEEecC--cccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCCh
Confidence 886 88999999999999999999999999 7899999999995 68999999643 3789999999999996541
Q ss_pred CccCCCCHHHHHHHHHHHHH
Q 001939 352 CYEGGINGGEVAAHILQETA 371 (993)
Q Consensus 352 ~~~~~~~ga~~~a~~i~~~~ 371 (993)
......++.|+.|.+.+
T Consensus 405 ---e~g~~~r~~a~~~~~~~ 421 (446)
T PLN00414 405 ---EIGNLVKRNHKKLKETL 421 (446)
T ss_pred ---hhHHHHHHHHHHHHHHH
Confidence 11223455566666553
No 40
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.83 E-value=6.8e-19 Score=191.36 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccC-CCC
Q 001939 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVG-APC 689 (993)
Q Consensus 611 ~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G-~~~ 689 (993)
|++..++..+.+.++.+ .|++|.+.++||.++|||||||+++|++.|++.+++.++++++++++|+++|+..++ ..+
T Consensus 46 n~i~~~~~~~~~~~~~~--~g~~i~i~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~ 123 (261)
T TIGR01920 46 RLIERILTAIRSKFGIV--DGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTG 123 (261)
T ss_pred HHHHHHHHHHHHhcCCC--CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCC
Confidence 77888888777766653 699999999999999999999999999999999999999999999999999987664 356
Q ss_pred CcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCCC
Q 001939 690 GVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGI 734 (993)
Q Consensus 690 G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv 734 (993)
|.+|++++++||. ++.+.+.....+..++| +..+++++.+.
T Consensus 124 ~~~D~~~~~~gG~---~~~~~~~~~~~~~~~~~-~~~~vv~~p~~ 164 (261)
T TIGR01920 124 AFDDAAASYLGGI---VITDNRRMKILKRDKLE-GCTAAVLVPKE 164 (261)
T ss_pred cHHHHHHHHhCCE---EEEeCCCceEEEecCCC-CceEEEEECCC
Confidence 7689999999994 55555443222233433 45677776544
No 41
>PLN02670 transferase, transferring glycosyl groups
Probab=99.82 E-value=3.6e-18 Score=199.34 Aligned_cols=344 Identities=13% Similarity=0.140 Sum_probs=196.2
Q ss_pred cCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc--cccc-ccCCCceEEeeeecc--CCccccCccccChHHHHHHHH
Q 001939 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF--VFTS-EIQSPRLFIRKVLLD--CGAVQADALTVDRLASLEKYS 96 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~--~~~~-~i~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~ 96 (993)
++.++.||+++++.||+.|..+|..|+|++..... +... ....+.+.+....+. .|+........+.......+.
T Consensus 12 ~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~~~~~~~~~~ 91 (472)
T PLN02670 12 FPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTDVPYTKQQLL 91 (472)
T ss_pred eCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccccccchhhHHHH
Confidence 57899999999999999999999999999776321 1100 000112333322110 122110000011110000111
Q ss_pred HHhhccHHHhHHHHHHHHhcCCCcEEEECC-CchHHHHHHHcCCcEEEEecCc-hh-HHHHHH-----------------
Q 001939 97 ETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFS-WD-FIYAEY----------------- 156 (993)
Q Consensus 97 ~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~-~~-~~~~~y----------------- 156 (993)
.. ..........+++++.+|++||+|. .+|+.-+|+.+|||.+.+...+ .. ..+..+
T Consensus 92 ~~---~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (472)
T PLN02670 92 KK---AFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLRSTAEDFT 168 (472)
T ss_pred HH---HHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCCCcccccc
Confidence 00 1111122334566667899999998 8899999999999999873322 00 000000
Q ss_pred -Hhhc-c---c------chHHHH----------HHHH---hhccccceeeecCCCCC-------CC-CC-CceeecCccc
Q 001939 157 -VMAA-G---H------HHRSIV----------WQIA---EDYSHCEFLIRLPGYCP-------MP-AF-RDVIDVPLVV 203 (993)
Q Consensus 157 -~~~~-~---~------~~~~i~----------~~l~---~~y~~~d~ll~~p~~~~-------~p-~~-~~v~~vp~~~ 203 (993)
.+.. + . +...+. .... .....++.++.-++... +. .. +.+..|||..
T Consensus 169 ~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~~v~~VGPl~ 248 (472)
T PLN02670 169 VVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYRKPIIPIGFLP 248 (472)
T ss_pred CCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhCCCeEEEecCC
Confidence 0000 0 0 000000 0000 00111222221111110 00 01 2466677764
Q ss_pred cc--C--C-c--Ch---HHHHHHhCCCCCCcEEEEEcCCCCC-hh----hHHHhhC--CCCcEEEEeCC-CC-----CCC
Q 001939 204 RR--L--H-K--SR---KEVRKELGIEDDVKLLILNFGGQPA-GW----KLKEEYL--PSGWKCLVCGA-SD-----SQL 260 (993)
Q Consensus 204 ~~--~--~-~--~~---~~~r~~l~~~~~~~~Vlvs~G~~~~-~~----~ll~~l~--~~~~~~vv~G~-~~-----~~l 260 (993)
.. . . . .. +++.++++-.+++.+|||||||... .. ++...+. +..+.+++-.. .. ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~l 328 (472)
T PLN02670 249 PVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEML 328 (472)
T ss_pred ccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcC
Confidence 21 1 0 0 11 3567888876668899999999864 21 2333333 33334333321 11 125
Q ss_pred CCC---------eEECCCCCCHH--HHHhh--cCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEE
Q 001939 261 PPN---------FIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGV 327 (993)
Q Consensus 261 ~~n---------v~~~~~~~~~p--dlL~~--adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~ 327 (993)
|+| +.+. .|+| ++|+| +.+||||||+||++|++++|||||++| .+.||+.|++++++.|+|+
T Consensus 329 p~~f~~~~~~rG~vv~---~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P--~~~DQ~~Na~~v~~~g~Gv 403 (472)
T PLN02670 329 PDGFEERVKGRGMIHV---GWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFP--VLNEQGLNTRLLHGKKLGL 403 (472)
T ss_pred ChHHHHhccCCCeEEe---CcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCc--chhccHHHHHHHHHcCeeE
Confidence 555 4443 5777 89988 566999999999999999999999999 7899999999999999999
Q ss_pred EEecC----CCChhhHHHHHHHHHhCCC--Ccc----------CCCCHHHHHHHHHHHHHcc
Q 001939 328 EMIRR----DLLTGHWKPYLERAISLKP--CYE----------GGINGGEVAAHILQETAIG 373 (993)
Q Consensus 328 ~l~~~----~~~~~~l~~~l~~ll~~~~--~~~----------~~~~ga~~~a~~i~~~~~~ 373 (993)
.+... .++.+++..+|++++.+++ .|+ ....++.++|+.+++++..
T Consensus 404 ~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 404 EVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRE 465 (472)
T ss_pred EeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHH
Confidence 99753 3788999999999997652 232 4677777888888777643
No 42
>PRK01123 shikimate kinase; Provisional
Probab=99.82 E-value=1.5e-18 Score=191.36 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCC-C
Q 001939 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGA-P 688 (993)
Q Consensus 610 ~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~-~ 688 (993)
.|++..++..+++..+.+ .|++|.+.|+||.++|||||||++||++.|++.+++.++++++++++|.++|+..++. .
T Consensus 56 ~~~v~~~~~~~~~~~~~~--~~~~i~i~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~ 133 (282)
T PRK01123 56 TRLIERCVELVLERFGID--YGATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVT 133 (282)
T ss_pred chHHHHHHHHHHHHhCCC--CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhcccccccc
Confidence 377778888777777765 5999999999999999999999999999999999999999999999999999987764 3
Q ss_pred CCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCCCcccc
Q 001939 689 CGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738 (993)
Q Consensus 689 ~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv~~~~ 738 (993)
.+.+|+++++|||. ++.+.........+ +.++.+++++++.+.+|
T Consensus 134 g~~~d~~~~~~GG~---~~~~~~~~~~~~~~--~~~~~~vv~~p~~~~~T 178 (282)
T PRK01123 134 GAFDDACASYFGGV---TVTDNREMKLLKRD--EVELDVLVLIPPEGAFS 178 (282)
T ss_pred CchhHHHHHHhCCE---EEEcCCCceEEEEe--cCCcEEEEEECCCCcch
Confidence 55578899999994 34443322121223 33588999988765554
No 43
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.82 E-value=3.6e-18 Score=195.64 Aligned_cols=324 Identities=18% Similarity=0.072 Sum_probs=194.4
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHH
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY 95 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 95 (993)
|+|++...|.| ||...++.++++|.++||+|++++...... .......++.+..... .+.. .......+...
T Consensus 2 ~~i~i~~~g~g-G~~~~~~~la~~L~~~g~ev~vv~~~~~~~-~~~~~~~g~~~~~~~~-~~~~-----~~~~~~~l~~~ 73 (357)
T PRK00726 2 KKILLAGGGTG-GHVFPALALAEELKKRGWEVLYLGTARGME-ARLVPKAGIEFHFIPS-GGLR-----RKGSLANLKAP 73 (357)
T ss_pred cEEEEEcCcch-HhhhHHHHHHHHHHhCCCEEEEEECCCchh-hhccccCCCcEEEEec-cCcC-----CCChHHHHHHH
Confidence 56766766777 999999999999999999999997753211 1111101122222100 0100 00001111111
Q ss_pred HHHhhccHHHhHHHHHHHHhcCCCcEEEECCC---chHHHHHHHcCCcEEEEecCchhHHHHHHHhhcccchHHHHHHHH
Q 001939 96 SETAVAPRKSILKDEVEWLNSIKADLVVSDVV---PVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIA 172 (993)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~---~~a~laA~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~~l~ 172 (993)
..+ ...+....+++++.+||+|+++.. ..+.++++..++|+|.+....|......+.
T Consensus 74 ~~~-----~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~r~~--------------- 133 (357)
T PRK00726 74 FKL-----LKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAVPGLANKLL--------------- 133 (357)
T ss_pred HHH-----HHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCCccHHHHHH---------------
Confidence 111 123445567889999999998862 234556777899998763322211000000
Q ss_pred hhccccceeeec-CC--CCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCCh--hhHH-Hh---h
Q 001939 173 EDYSHCEFLIRL-PG--YCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLK-EE---Y 243 (993)
Q Consensus 173 ~~y~~~d~ll~~-p~--~~~~p~~~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~~ll-~~---l 243 (993)
+..++.++.. +. ....+....+.+.|+....... ...+..++++++.++|++..|+.+.. ..++ +. +
T Consensus 134 --~~~~d~ii~~~~~~~~~~~~~~i~vi~n~v~~~~~~~--~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~ 209 (357)
T PRK00726 134 --ARFAKKVATAFPGAFPEFFKPKAVVTGNPVREEILAL--AAPPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALL 209 (357)
T ss_pred --HHHhchheECchhhhhccCCCCEEEECCCCChHhhcc--cchhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHh
Confidence 0011111110 00 0000111223344443321111 11223455555666777666554432 2233 22 2
Q ss_pred CCCCcEEEEeCCCCCC-------CCCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCC--CCChH
Q 001939 244 LPSGWKCLVCGASDSQ-------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY--FNEEP 314 (993)
Q Consensus 244 ~~~~~~~vv~G~~~~~-------l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~--~~EQ~ 314 (993)
......++++|....+ ++-++++.+|.++++++|+.||++|+++|.+|++||+++|+|+|++|.+. ..||.
T Consensus 210 ~~~~~~~~~~G~g~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~ 289 (357)
T PRK00726 210 PEALQVIHQTGKGDLEEVRAAYAAGINAEVVPFIDDMAAAYAAADLVICRAGASTVAELAAAGLPAILVPLPHAADDHQT 289 (357)
T ss_pred hhCcEEEEEcCCCcHHHHHHHhhcCCcEEEeehHhhHHHHHHhCCEEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHH
Confidence 1111345567876422 12247888998889999999999999999999999999999999999642 46898
Q ss_pred HHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc---------CCCCHHHHHHHHHHHHH
Q 001939 315 FLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQETA 371 (993)
Q Consensus 315 ~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~ga~~~a~~i~~~~ 371 (993)
.|++.+.+.|.|+.+..++++++.|.++|+++++++..+. ....++.++++.|.+.+
T Consensus 290 ~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 290 ANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGKPDAAERLADLIEELA 355 (357)
T ss_pred HHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHh
Confidence 9999999999999999888888999999999998864321 67899999999998864
No 44
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.82 E-value=7.7e-18 Score=198.19 Aligned_cols=339 Identities=13% Similarity=0.105 Sum_probs=189.1
Q ss_pred cEEEEEecCCCCcccHHHHHHHHHHHHHC--CCeEEEEeCCCCc-ccccccCCCceEEeeeeccCCccccCccccChHHH
Q 001939 15 HLVFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHVVTGAPDF-VFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLAS 91 (993)
Q Consensus 15 ~~~Il~~v~g~G~GH~~ralaLA~aL~~~--Gh~V~~v~~~~~~-~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 91 (993)
..+|++ ++..+.||++|++.||+.|..+ ||.|+|++..... ........+.+.+.... .+.........+....
T Consensus 10 ~~hVvl-vp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp--~~~p~~~~~~~~~~~~ 86 (459)
T PLN02448 10 SCHVVA-MPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIP--NVIPSELVRAADFPGF 86 (459)
T ss_pred CcEEEE-ECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECC--CCCCCccccccCHHHH
Confidence 345543 4677899999999999999999 9999999876421 11111011234443321 1111000001111111
Q ss_pred HHHHHHHhhccHHHhHHHHHHHHhc--CCCcEEEECC-CchHHHHHHHcCCcEEEEecCc-hh-HHHHHH----------
Q 001939 92 LEKYSETAVAPRKSILKDEVEWLNS--IKADLVVSDV-VPVACRAAADAGIRSVCVTNFS-WD-FIYAEY---------- 156 (993)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~L~~--~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~-~~-~~~~~y---------- 156 (993)
+..+.. .......+++++ .++|+||+|. .+++..+|+.+|||.+.+.... .. ..+..+
T Consensus 87 ~~~~~~-------~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~ 159 (459)
T PLN02448 87 LEAVMT-------KMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFP 159 (459)
T ss_pred HHHHHH-------HhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCC
Confidence 111111 112222344444 3679999997 7899999999999999873322 00 000000
Q ss_pred -------------Hhhccc----chH--------HHHHHHHhh---ccccceeeecCCCCCC--------CCC-Cceeec
Q 001939 157 -------------VMAAGH----HHR--------SIVWQIAED---YSHCEFLIRLPGYCPM--------PAF-RDVIDV 199 (993)
Q Consensus 157 -------------~~~~~~----~~~--------~i~~~l~~~---y~~~d~ll~~p~~~~~--------p~~-~~v~~v 199 (993)
++..+. ... ...+.+.+. ...++.++.-++...- ..+ ..+..+
T Consensus 160 ~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~i 239 (459)
T PLN02448 160 VELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYPI 239 (459)
T ss_pred CccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEEe
Confidence 000000 000 001111111 1112222221111000 011 134456
Q ss_pred Cccccc-C-C-------c--ChHHHHHHhCCCCCCcEEEEEcCCCCCh-h----hHHHhhCCCCcEEEE-eCCCCC---C
Q 001939 200 PLVVRR-L-H-------K--SRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCLV-CGASDS---Q 259 (993)
Q Consensus 200 p~~~~~-~-~-------~--~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-~----~ll~~l~~~~~~~vv-~G~~~~---~ 259 (993)
||.... . . . ...++.++++..+++++|||||||.... . +++..+...++.+++ ...... +
T Consensus 240 GP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~~~ 319 (459)
T PLN02448 240 GPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEASRLKE 319 (459)
T ss_pred cCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCchhhHhH
Confidence 664321 0 0 1 1135677887666788999999997542 1 333345445554443 221111 1
Q ss_pred -CCCCeEECCCCCCHH--HHHhhcC--EEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cCcEEEEec--
Q 001939 260 -LPPNFIKLPKDAYTP--DFMAASD--CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQGGVEMIR-- 331 (993)
Q Consensus 260 -l~~nv~~~~~~~~~p--dlL~~ad--l~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~-~G~g~~l~~-- 331 (993)
.+.|+.+.+ |+| ++|+|.+ +||||||+||++|++++|||||++| .+.||+.|++++++ .|+|+.+..
T Consensus 320 ~~~~~~~v~~---w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P--~~~DQ~~na~~v~~~~g~G~~~~~~~ 394 (459)
T PLN02448 320 ICGDMGLVVP---WCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFP--LFWDQPLNSKLIVEDWKIGWRVKREV 394 (459)
T ss_pred hccCCEEEec---cCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEecc--ccccchhhHHHHHHHhCceEEEeccc
Confidence 235787754 555 8998855 5999999999999999999999999 78999999999997 588888853
Q ss_pred ---CCCChhhHHHHHHHHHhCCCCccCCCCHHHHHHHHHHHHH
Q 001939 332 ---RDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (993)
Q Consensus 332 ---~~~~~~~l~~~l~~ll~~~~~~~~~~~ga~~~a~~i~~~~ 371 (993)
..++++.+.+++++++.++. .......+.|..|.+.+
T Consensus 395 ~~~~~~~~~~l~~av~~vl~~~~---~~~~~~r~~a~~~~~~~ 434 (459)
T PLN02448 395 GEETLVGREEIAELVKRFMDLES---EEGKEMRRRAKELQEIC 434 (459)
T ss_pred ccCCcCcHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHH
Confidence 24688999999999997641 11223445555555544
No 45
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.82 E-value=6e-19 Score=196.63 Aligned_cols=234 Identities=18% Similarity=0.270 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCC
Q 001939 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (993)
Q Consensus 610 ~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~ 689 (993)
.|.++.++..+++..|.+. .|++|.|.++||.++|||||||.++|++.|++.+++.++++++|+++|.++|.|
T Consensus 60 ~Nlv~~a~~~~~~~~g~~~-~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E~h------ 132 (302)
T TIGR00191 60 DNLIYQVAKRFLDQLGIRM-PPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELEGH------ 132 (302)
T ss_pred cccHHHHHHHHHHHcCCCC-CCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhcCC------
Confidence 4777888887787777653 589999999999999999999999999999999999999999999999999974
Q ss_pred Ccchh-hHhhccccceEEEEeecCccceeeecCC--CCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCc
Q 001939 690 GVMDQ-MASACGEANKLLAMVCQPAELLGVVEIP--SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLP 766 (993)
Q Consensus 690 G~mDq-~~~~~Gg~~~~~~i~~~~~~~~~~v~~p--~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~ 766 (993)
.|+ .++++||. ++...+.... ..++++ +++.+++++++.+-+|... |
T Consensus 133 --~Dnv~~~l~GG~---~~~~~~~~~~-~~~~~~~~~~~~~vl~~p~~~~sT~~a-~----------------------- 182 (302)
T TIGR00191 133 --PDNVAPALLGGF---QLAFVEDDKL-EVLKIPIFSKLDWVLAIPNIEVSTAEA-R----------------------- 182 (302)
T ss_pred --cccHHHHhccCE---EEEEEcCCce-EEEEeCCCCCEEEEEEECCCcccHHHH-H-----------------------
Confidence 365 46889994 3333232222 344443 6899999998776655310 0
Q ss_pred ccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCccccccc
Q 001939 767 QSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRA 846 (993)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (993)
+.+|+.++
T Consensus 183 --------------------------------------------~~lp~~~~---------------------------- 190 (302)
T TIGR00191 183 --------------------------------------------AVLPKAYP---------------------------- 190 (302)
T ss_pred --------------------------------------------HhCcccCC----------------------------
Confidence 01121110
Q ss_pred ccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHh--hhhhhhcCCCCchHHHHHHHHHHHhhhccccCCCCcccce
Q 001939 847 PVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQC--HYSYSACGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGA 924 (993)
Q Consensus 847 r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~s--H~slr~~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~Ga 924 (993)
..+.+....|...+..+|.++ ++ .++++|.++ |+.++.. .+|+++++++.+++ .|++|+
T Consensus 191 -~~~~v~~~~~~~~l~~al~~~----~~-~l~~~~~~d~l~e~~~~~--l~p~l~~i~~~~~~-----------~Ga~g~ 251 (302)
T TIGR00191 191 -RQDLVFNLSHLAGLVHAIYQK----KP-DLGAIMMKDRIHQPYRES--LIPNLFKIKQAALE-----------KGAYGI 251 (302)
T ss_pred -HHHHHHHHHHHHHHHHHHHcC----CH-HHHHHHcccccchhhHhh--hCCCHHHHHHHHHH-----------CCCeEE
Confidence 001111223444455667664 44 466666554 7888864 68999999999987 689999
Q ss_pred eeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCcEEee--cCCCCc
Q 001939 925 KITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG--SSPGAG 975 (993)
Q Consensus 925 kltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~--~~~G~~ 975 (993)
+|||+| +|++++.+++.. .+.+.++.+.+. ..+...++++. ...|+.
T Consensus 252 ~lSGsG--ptv~al~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Ga~ 300 (302)
T TIGR00191 252 TISGSG--PTILAMADEEFA-EQKEQDLLEVLH-KQGIEGTVHVLDFDNDGAR 300 (302)
T ss_pred EEEchh--hhheEEecchhh-HHHHHHHHHHHH-hcCCCeEEEEcccCCCCeE
Confidence 999999 999888765443 233444444443 45667778876 355654
No 46
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.81 E-value=2.3e-17 Score=191.62 Aligned_cols=332 Identities=14% Similarity=0.132 Sum_probs=187.5
Q ss_pred cCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHHHHHhhc
Q 001939 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVA 101 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 101 (993)
++.++.||++|++.||+.|..+|+.|+|+++............+.+.+... ..|+.....-..+. ...+...+.
T Consensus 11 ~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~i--pdglp~~~~~~~~~---~~~~~~~~~- 84 (449)
T PLN02173 11 VPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATI--SDGYDQGGFSSAGS---VPEYLQNFK- 84 (449)
T ss_pred ecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEc--CCCCCCcccccccC---HHHHHHHHH-
Confidence 578899999999999999999999999998763211000001122444332 22332100000110 111211110
Q ss_pred cHHHhHHHHHHHHhc----CCC-cEEEECC-CchHHHHHHHcCCcEEEEecCc-hh-HHHHH-H---------Hhhccc-
Q 001939 102 PRKSILKDEVEWLNS----IKA-DLVVSDV-VPVACRAAADAGIRSVCVTNFS-WD-FIYAE-Y---------VMAAGH- 162 (993)
Q Consensus 102 ~~~~~l~~~~~~L~~----~kP-DlVVsD~-~~~a~laA~~~gIP~V~i~~~~-~~-~~~~~-y---------~~~~~~- 162 (993)
........++|++ .+| ++||+|. .+|+.-+|+.+|||.+.+...+ .. ..+.. . ++..+.
T Consensus 85 --~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~~~~~~~~pg~p~l 162 (449)
T PLN02173 85 --TFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINNGSLTLPIKDLPLL 162 (449)
T ss_pred --HhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhccCCccCCCCCCCCC
Confidence 0111222333433 356 9999998 7899999999999998863211 10 00000 0 010000
Q ss_pred ---c----------hHHHHHHH---HhhccccceeeecCCCCC-------CCCCCceeecCccccc--------C-C---
Q 001939 163 ---H----------HRSIVWQI---AEDYSHCEFLIRLPGYCP-------MPAFRDVIDVPLVVRR--------L-H--- 207 (993)
Q Consensus 163 ---~----------~~~i~~~l---~~~y~~~d~ll~~p~~~~-------~p~~~~v~~vp~~~~~--------~-~--- 207 (993)
. .+.....+ ......++.++.-++... +.....+..|||.... . .
T Consensus 163 ~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~ 242 (449)
T PLN02173 163 ELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKVCPVLTIGPTVPSMYLDQQIKSDNDYD 242 (449)
T ss_pred ChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhcCCeeEEcccCchhhcccccccccccc
Confidence 0 00011111 111223333332111110 0011245567776410 0 0
Q ss_pred ------cChHHHHHHhCCCCCCcEEEEEcCCCCCh-h----hHHHhhCCCCcEEEEeCC-C--CC-C----C-CCCeEEC
Q 001939 208 ------KSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCLVCGA-S--DS-Q----L-PPNFIKL 267 (993)
Q Consensus 208 ------~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-~----~ll~~l~~~~~~~vv~G~-~--~~-~----l-~~nv~~~ 267 (993)
...++..++++..+++++|||||||...- . ++...+...++.+++-.. . .+ . . +.|+.+.
T Consensus 243 ~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gLs~~~flWvvr~~~~~~lp~~~~~~~~~~~~~i~ 322 (449)
T PLN02173 243 LNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAISNFSYLWVVRASEESKLPPGFLETVDKDKSLVL 322 (449)
T ss_pred ccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHhcCCCEEEEEeccchhcccchHHHhhcCCceEEe
Confidence 01123567787666778999999997652 2 233345333444444211 1 11 1 1 5677775
Q ss_pred CCCCCHH--HHHhh--cCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-CcEEEEecCC----CChhh
Q 001939 268 PKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY-QGGVEMIRRD----LLTGH 338 (993)
Q Consensus 268 ~~~~~~p--dlL~~--adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~-G~g~~l~~~~----~~~~~ 338 (993)
+ |+| ++|+| +.+||||||+||++|++++|||||++| .+.||+.|++++++. |+|+.+..++ ++.+.
T Consensus 323 ~---W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P--~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~ 397 (449)
T PLN02173 323 K---WSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMP--QWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREE 397 (449)
T ss_pred C---CCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecC--chhcchHHHHHHHHHhCceEEEeecccCCcccHHH
Confidence 4 566 89998 459999999999999999999999999 789999999999975 9998886432 47899
Q ss_pred HHHHHHHHHhCCCCccCCCCHHHHHHHHHHHHH
Q 001939 339 WKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (993)
Q Consensus 339 l~~~l~~ll~~~~~~~~~~~ga~~~a~~i~~~~ 371 (993)
+.+++++++.++ .....++-|+.|.+.+
T Consensus 398 v~~av~~vm~~~-----~~~~~r~~a~~~~~~a 425 (449)
T PLN02173 398 IEFSIKEVMEGE-----KSKEMKENAGKWRDLA 425 (449)
T ss_pred HHHHHHHHhcCC-----hHHHHHHHHHHHHHHH
Confidence 999999999765 1234555556665554
No 47
>PTZ00299 homoserine kinase; Provisional
Probab=99.81 E-value=1.7e-18 Score=193.08 Aligned_cols=248 Identities=18% Similarity=0.180 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHhccccC
Q 001939 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIH---PRDLALLCQKVENHIVG 686 (993)
Q Consensus 610 ~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~---~~el~~la~~~E~~~~G 686 (993)
.|.++.++..++++++....+|++|.|.++||.++|||||||.+||.+.++++++|.+++ .++|.++|.++|.|.
T Consensus 61 ~nlv~~a~~~~~~~~~~~~~~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~EGHp-- 138 (336)
T PTZ00299 61 DNMVVQACRLAFEEYAHKSMPPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFEGHP-- 138 (336)
T ss_pred chHHHHHHHHHHHHhcCCCCCceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhhcCCc--
Confidence 566777777677666643125899999999999999999999999999999999999995 799999999999863
Q ss_pred CCCCcchh-hHhhccccceEEEEeecCccc-eeeecCCCCeEEEEEeCCCc--cccCCCCccchhhhhhcchhhHHhhhh
Q 001939 687 APCGVMDQ-MASACGEANKLLAMVCQPAEL-LGVVEIPSHIRFWGIDSGIR--HSVGGADYGSVRAGAFMGRKMIKSTAS 762 (993)
Q Consensus 687 ~~~G~mDq-~~~~~Gg~~~~~~i~~~~~~~-~~~v~~p~~~~~ll~dSgv~--~~~~~~~y~~~r~~~~~~~~~v~~~a~ 762 (993)
|| .++++||.. +.....+.+. ...++.|+++.++++..+.. -+|.
T Consensus 139 ------DNVapal~GG~~--~~~~~~~ge~~~~~i~~~~~~~~vv~iP~~~~~~sT~----------------------- 187 (336)
T PTZ00299 139 ------DNAAPAIYGGIQ--LVYKKDNGRFLTYRVPTPPNLSVVLFVPHNKMKANTH----------------------- 187 (336)
T ss_pred ------ccHHHHHhCCEE--EEEecCCCceEEEecCCCCCeEEEEEECCCCccccHH-----------------------
Confidence 54 368999952 2222122222 13556667888888853321 0110
Q ss_pred ccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCccc
Q 001939 763 GMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTY 842 (993)
Q Consensus 763 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (993)
. +++.||+.++
T Consensus 188 ---------------------------------~------------aR~vLP~~v~------------------------ 198 (336)
T PTZ00299 188 ---------------------------------V------------TRNLIPTSVS------------------------ 198 (336)
T ss_pred ---------------------------------H------------HHhhCcccCc------------------------
Confidence 0 1134565442
Q ss_pred ccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhhhhcCCCCchHHHHHHHHHHHhhhccccCCCCccc
Q 001939 843 FVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSACGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLF 922 (993)
Q Consensus 843 ~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~slr~~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~ 922 (993)
..+++....|+..+..+|.++ |++.+..+...-|+.+|... ..|+++++.+.+.+ .|++
T Consensus 199 -----~~dav~n~~~~~~lv~al~~~----d~~ll~~~~D~lhep~R~~~-liP~~~~v~~~~~~-----------~Ga~ 257 (336)
T PTZ00299 199 -----LEDAVFNISRTSILVLALSTG----DLRMLKSCSDKLHEQQRSDA-LFPHFRPCVKAARE-----------AGAH 257 (336)
T ss_pred -----HHHHHHhhhHHHHHHHHHHhC----CHHHHHhchhcccCcccccc-cCccHHHHHHHHHH-----------CCCe
Confidence 224455566777788888886 88888764444899999621 48999999999987 7999
Q ss_pred ceeeeccccCceEEEEccC-----------CcccHHHHHHHHHHHHhhcCCCCcEEee--cCCCCcceeeeEEE
Q 001939 923 GAKITGGGSGGTICVIGRN-----------SLRSSEQVLEIQQRYKDATGYLPLIIEG--SSPGAGKFGHLRIR 983 (993)
Q Consensus 923 GakltGaG~GG~vi~l~~~-----------~~~~~~~~~~i~~~y~~~~g~~~~~~~~--~~~G~~~~~~~~~~ 983 (993)
|+-|||+| .|++++.+. ...++++.+++.+.|. +.|+...+++. ...|++...---||
T Consensus 258 g~~lSGSG--PTv~al~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~~ 328 (336)
T PTZ00299 258 YAFLSGAG--PSVCALVGGRHGDPLTQPREERKAESVAEAMIKAAE-AVGVAGRVIITQPSDQGVHLVGTTCIR 328 (336)
T ss_pred EEEEEchh--hhheEEeccccccccccccchhHHHHHHHHHHHHHH-HcCCceEEEEccCCCCCcEEEeeeecC
Confidence 99999999 999888652 2223466777777665 66888899886 46688776544443
No 48
>PRK01212 homoserine kinase; Provisional
Probab=99.81 E-value=1.4e-18 Score=193.97 Aligned_cols=233 Identities=19% Similarity=0.239 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCC
Q 001939 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (993)
Q Consensus 610 ~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~ 689 (993)
.|.++.++..+.+..+.. .|++|.|.++||.++|||||||..+|++.+++.+++.+++.++|+++|.++|.+.
T Consensus 62 ~Nli~~a~~~~~~~~~~~--~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~~~----- 134 (301)
T PRK01212 62 KNLVYQAALKFLEKLGKP--PGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEGHP----- 134 (301)
T ss_pred cccHHHHHHHHHHHcCCC--CCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCH-----
Confidence 467777777777777754 6899999999999999999999999999999999999999999999999999742
Q ss_pred Ccchh-hHhhccccceEEEE-eecCccceeeecCCCCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcc
Q 001939 690 GVMDQ-MASACGEANKLLAM-VCQPAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQ 767 (993)
Q Consensus 690 G~mDq-~~~~~Gg~~~~~~i-~~~~~~~~~~v~~p~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~ 767 (993)
|+ .++++||. ++. +..+. ...+++.++++.+++++++..-+|.. +
T Consensus 135 ---ddv~~~l~GG~---~~~~~g~g~-~~~~~~~~~~~~~vlv~p~~~~sT~~--------------------a------ 181 (301)
T PRK01212 135 ---DNVAPALLGGL---VLALEENGV-ISVKIPVFDDLKWVVAIPNIELSTAE--------------------A------ 181 (301)
T ss_pred ---HHHHHHHhCCE---EEEEECCce-EEEEecCCCCeEEEEEECCCcCCHHH--------------------H------
Confidence 44 36789995 333 23332 23566666788899998766444321 0
Q ss_pred cCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccc
Q 001939 768 SLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAP 847 (993)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 847 (993)
+ +.+|+.+ .
T Consensus 182 ------------------------------~------------~~l~~~~-----------------------------~ 190 (301)
T PRK01212 182 ------------------------------R------------AVLPKQY-----------------------------S 190 (301)
T ss_pred ------------------------------H------------HhCcCcC-----------------------------C
Confidence 0 0111100 0
Q ss_pred cccccchhhHHHHHHHHHHccCChhHHHHHHHHHHH-hhhhhhhcCCCCchHHHHHHHHHHHhhhccccCCCCcccceee
Q 001939 848 VCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQ-CHYSYSACGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKI 926 (993)
Q Consensus 848 ~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~-sH~slr~~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~Gakl 926 (993)
..+.+.+..|+..+..+|.++ |++.+|++|+. .|+.+|.. .+|+++++++.+++ .|++|++|
T Consensus 191 ~~~~~~~~~~~~~l~~al~~~----d~~~~~~~~~~~~~~~~~~~--~~p~~~~i~~~~~~-----------~Ga~g~~~ 253 (301)
T PRK01212 191 LKDAVFNSSRAALLVAALYTG----DYELAGRAMKDVLHEPYRAK--LIPGFAEVRQAALE-----------AGALGAGI 253 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhC----CHHHHHHHhchhheHHhHHh--hCCCHHHHHHHHHH-----------CCCeEEEE
Confidence 012233345677788888875 89999999954 57777653 46999999998887 68999999
Q ss_pred eccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCcEEee--cCCCCc
Q 001939 927 TGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG--SSPGAG 975 (993)
Q Consensus 927 tGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~--~~~G~~ 975 (993)
||+| +|++++.+++.. +++.+++++.| .. |..+.++.+ ...|+.
T Consensus 254 SGsG--ptv~~l~~~~~~-~~~~~~l~~~~-~~-~~~~~~~~~~~~~~G~~ 299 (301)
T PRK01212 254 SGAG--PTVFALCDKEDA-EKVADALQKAF-LQ-GIEGFVHVLRLDTAGAR 299 (301)
T ss_pred Echh--hheeEEeccccH-HHHHHHHHHhh-cc-CCCeEEEEeccCCCceE
Confidence 9987 888877765443 46777777766 22 777888876 355654
No 49
>PLN02764 glycosyltransferase family protein
Probab=99.81 E-value=1.8e-17 Score=192.09 Aligned_cols=328 Identities=13% Similarity=0.122 Sum_probs=186.4
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccC-CC-ceEEeeeecc--CCccccCccccChH-H
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQ-SP-RLFIRKVLLD--CGAVQADALTVDRL-A 90 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~-~~-~~~~~~~~~~--~g~~~~~~~~~~~~-~ 90 (993)
++|++ ++.++.||++|++.||+.|..+|+.|+|++............ .+ .+.++..... .|+........+.. .
T Consensus 6 ~Hvvl-~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~~~ 84 (453)
T PLN02764 6 FHVLM-YPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIPVT 84 (453)
T ss_pred cEEEE-ECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCChh
Confidence 44533 578899999999999999999999999997653211001010 01 1112221111 13211000000001 0
Q ss_pred HHHHHHHHhhccHHHhHHHHHHHHhcCCCcEEEECCCchHHHHHHHcCCcEEEEecCc-hh-HHHH-H--H----Hhhcc
Q 001939 91 SLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFS-WD-FIYA-E--Y----VMAAG 161 (993)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~a~laA~~~gIP~V~i~~~~-~~-~~~~-~--y----~~~~~ 161 (993)
....+.. ..........++|++.+||+||+|+.+|+.-+|+.+|||.+.+...+ .. ..+. . . .+..+
T Consensus 85 ~~~~~~~----a~~~~~~~~~~~l~~~~~~~iV~D~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~pglp 160 (453)
T PLN02764 85 SADLLMS----AMDLTRDQVEVVVRAVEPDLIFFDFAHWIPEVARDFGLKTVKYVVVSASTIASMLVPGGELGVPPPGYP 160 (453)
T ss_pred HHHHHHH----HHHHhHHHHHHHHHhCCCCEEEECCchhHHHHHHHhCCCEEEEEcHHHHHHHHHhcccccCCCCCCCCC
Confidence 1111111 11112233355677778999999998899999999999998873221 00 0000 0 0 00000
Q ss_pred c---c--------------------hHHHHHHHHhhccccceeeecCCCCC-------CCCC--CceeecCcccccC---
Q 001939 162 H---H--------------------HRSIVWQIAEDYSHCEFLIRLPGYCP-------MPAF--RDVIDVPLVVRRL--- 206 (993)
Q Consensus 162 ~---~--------------------~~~i~~~l~~~y~~~d~ll~~p~~~~-------~p~~--~~v~~vp~~~~~~--- 206 (993)
. . .......+......++.++.-+++.. +... +++..|||....+
T Consensus 161 ~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~~~ 240 (453)
T PLN02764 161 SSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFPEPDKT 240 (453)
T ss_pred CCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCccCcccc
Confidence 0 0 00011111111122222222222111 0000 2466788764321
Q ss_pred CcChHHHHHHhCCCCCCcEEEEEcCCCCC-h-hhH---HHhhC--CCCcEEEEe---CCCC--CCCCCCeEEC--CC---
Q 001939 207 HKSRKEVRKELGIEDDVKLLILNFGGQPA-G-WKL---KEEYL--PSGWKCLVC---GASD--SQLPPNFIKL--PK--- 269 (993)
Q Consensus 207 ~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~-~-~~l---l~~l~--~~~~~~vv~---G~~~--~~l~~nv~~~--~~--- 269 (993)
...+++.-++|+-.+.+.+|||||||... . .++ ...|. ...+.+++- |... ..+|+|+... +.
T Consensus 241 ~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v 320 (453)
T PLN02764 241 RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVV 320 (453)
T ss_pred ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcE
Confidence 11245677889877788899999999865 2 222 22332 334555543 1111 1256555321 10
Q ss_pred -CCCHH--HHHhh--cCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHH-HcCcEEEEecC---CCChhhHH
Q 001939 270 -DAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLE-FYQGGVEMIRR---DLLTGHWK 340 (993)
Q Consensus 270 -~~~~p--dlL~~--adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~-~~G~g~~l~~~---~~~~~~l~ 340 (993)
..|+| ++|+| +++||||||+||++|++++|||||++| .+.||+.||++++ ..|+|+.+..+ .++.+.+.
T Consensus 321 ~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P--~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~ 398 (453)
T PLN02764 321 WGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVP--QLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLR 398 (453)
T ss_pred EeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCC--cccchHHHHHHHHHHhceEEEeccccCCccCHHHHH
Confidence 15777 89988 778999999999999999999999999 7899999999996 58999887543 47889999
Q ss_pred HHHHHHHhCC
Q 001939 341 PYLERAISLK 350 (993)
Q Consensus 341 ~~l~~ll~~~ 350 (993)
++|++++.+.
T Consensus 399 ~av~~vm~~~ 408 (453)
T PLN02764 399 DAINSVMKRD 408 (453)
T ss_pred HHHHHHhcCC
Confidence 9999999764
No 50
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.80 E-value=2.8e-17 Score=191.69 Aligned_cols=332 Identities=13% Similarity=0.121 Sum_probs=186.3
Q ss_pred cCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHHHHHhhc
Q 001939 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVA 101 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 101 (993)
++..+.||++|++.||+.|..+|+.|+|++...... ......+.+.+.. ...|+...+.-..+....+..+..
T Consensus 13 vPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~-~~~~~~~~i~~~~--ip~glp~~~~~~~~~~~~~~~~~~---- 85 (451)
T PLN02410 13 VPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYF-SPSDDFTDFQFVT--IPESLPESDFKNLGPIEFLHKLNK---- 85 (451)
T ss_pred ECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccc-ccccCCCCeEEEe--CCCCCCcccccccCHHHHHHHHHH----
Confidence 578999999999999999999999999997764221 1111111233322 112322100000011111111111
Q ss_pred cHHHhHHHHHHH-Hh--cCCCcEEEECC-CchHHHHHHHcCCcEEEEecCc-hhH-HHHH---HH------h--------
Q 001939 102 PRKSILKDEVEW-LN--SIKADLVVSDV-VPVACRAAADAGIRSVCVTNFS-WDF-IYAE---YV------M-------- 158 (993)
Q Consensus 102 ~~~~~l~~~~~~-L~--~~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~-~~~-~~~~---y~------~-------- 158 (993)
.....+.+.++- .. ..+|++||+|+ .+|+.-+|+.+|||.+.+...+ +.. .+.. +. +
T Consensus 86 ~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (451)
T PLN02410 86 ECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKEPKGQQ 165 (451)
T ss_pred HhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCccccccCc
Confidence 111112222221 11 12569999998 7899999999999999873322 110 0000 00 0
Q ss_pred -----hccc----chH--------HHHHHHHh--hccccceeeecCCCCC-------C-CCC-CceeecCccccc---CC
Q 001939 159 -----AAGH----HHR--------SIVWQIAE--DYSHCEFLIRLPGYCP-------M-PAF-RDVIDVPLVVRR---LH 207 (993)
Q Consensus 159 -----~~~~----~~~--------~i~~~l~~--~y~~~d~ll~~p~~~~-------~-p~~-~~v~~vp~~~~~---~~ 207 (993)
..+. ... .+...+.. ....++.++.-++... + ... +.+..||+.... +.
T Consensus 166 ~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~~~~~~~~ 245 (451)
T PLN02410 166 NELVPEFHPLRCKDFPVSHWASLESIMELYRNTVDKRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLHLVASAPT 245 (451)
T ss_pred cccCCCCCCCChHHCcchhcCCcHHHHHHHHHHhhcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEecccccccCCCc
Confidence 0000 000 00000100 0112332222111110 0 001 346677776421 11
Q ss_pred cC---hHHHHHHhCCCCCCcEEEEEcCCCCCh-h----hHHHhhCC--CCcEEEEe-CC----CC----C-C----CCCC
Q 001939 208 KS---RKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLP--SGWKCLVC-GA----SD----S-Q----LPPN 263 (993)
Q Consensus 208 ~~---~~~~r~~l~~~~~~~~Vlvs~G~~~~~-~----~ll~~l~~--~~~~~vv~-G~----~~----~-~----l~~n 263 (993)
.. ..+..++++..+.+.+|||||||...- . ++...+.. ..+.+++- +. .. + . .++|
T Consensus 246 ~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~ 325 (451)
T PLN02410 246 SLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKIISGR 325 (451)
T ss_pred cccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHhccCC
Confidence 11 123456777666778999999998652 1 23333432 33333332 11 00 1 1 3466
Q ss_pred eEECCCCCCHH--HHHhh--cCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-CcEEEEecCCCChhh
Q 001939 264 FIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY-QGGVEMIRRDLLTGH 338 (993)
Q Consensus 264 v~~~~~~~~~p--dlL~~--adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~-G~g~~l~~~~~~~~~ 338 (993)
..+. +|+| ++|+| +.+||||||+||++|++++|||||++| .+.||+.||+++++. |+|+.+. ..++.+.
T Consensus 326 g~v~---~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P--~~~DQ~~na~~~~~~~~~G~~~~-~~~~~~~ 399 (451)
T PLN02410 326 GYIV---KWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKP--FSSDQKVNARYLECVWKIGIQVE-GDLDRGA 399 (451)
T ss_pred eEEE---ccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEecc--ccccCHHHHHHHHHHhCeeEEeC-CcccHHH
Confidence 6775 4666 89998 777999999999999999999999999 789999999999866 9999997 6788999
Q ss_pred HHHHHHHHHhCCCCccCCCCHHHHHHHHHHHHH
Q 001939 339 WKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (993)
Q Consensus 339 l~~~l~~ll~~~~~~~~~~~ga~~~a~~i~~~~ 371 (993)
+.++|++++.++ ......+.|+.|.+.+
T Consensus 400 v~~av~~lm~~~-----~~~~~r~~a~~l~~~~ 427 (451)
T PLN02410 400 VERAVKRLMVEE-----EGEEMRKRAISLKEQL 427 (451)
T ss_pred HHHHHHHHHcCC-----cHHHHHHHHHHHHHHH
Confidence 999999999765 1234455556665544
No 51
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.80 E-value=1.4e-17 Score=189.95 Aligned_cols=301 Identities=18% Similarity=0.097 Sum_probs=178.0
Q ss_pred EEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHHHH
Q 001939 18 FAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSE 97 (993)
Q Consensus 18 Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 97 (993)
|++.. |...||..+++.++++|.++||+|++++...... ........+.+..... .+... .. ....+..
T Consensus 2 ~~~~~-~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~-----~~---~~~~~~~ 70 (350)
T cd03785 2 ILIAG-GGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-ARLVPKAGIPLHTIPV-GGLRR-----KG---SLKKLKA 70 (350)
T ss_pred EEEEe-cCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-hhcccccCCceEEEEe-cCcCC-----CC---hHHHHHH
Confidence 43343 4445999999999999999999999987653211 1111101122211100 00000 00 0111111
Q ss_pred HhhccHHHhHHHHHHHHhcCCCcEEEECCC---chHHHHHHHcCCcEEEEecCchhHHHHHHHhhcccchHHHHHHHHhh
Q 001939 98 TAVAPRKSILKDEVEWLNSIKADLVVSDVV---PVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAED 174 (993)
Q Consensus 98 ~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~---~~a~laA~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~~l~~~ 174 (993)
++ .....+....+++++++||+|+++.. ..+.++++..++|++......|.... ..+ .
T Consensus 71 ~~--~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~~~~~---------------~~~--~ 131 (350)
T cd03785 71 PF--KLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAVPGLA---------------NRL--L 131 (350)
T ss_pred HH--HHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCCccHH---------------HHH--H
Confidence 11 01122344567789999999998762 23456778889999875332221100 000 0
Q ss_pred ccccceeeecCCCC-C-C-CCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCCh--hhHH-H---hhCC
Q 001939 175 YSHCEFLIRLPGYC-P-M-PAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLK-E---EYLP 245 (993)
Q Consensus 175 y~~~d~ll~~p~~~-~-~-p~~~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~~ll-~---~l~~ 245 (993)
+..++.++...... . . +....+++.|+....... ...++.++++++.++|++..|+.+.. ..++ . .+..
T Consensus 132 ~~~~~~vi~~s~~~~~~~~~~~~~~i~n~v~~~~~~~--~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~ 209 (350)
T cd03785 132 ARFADRVALSFPETAKYFPKDKAVVTGNPVREEILAL--DRERARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLR 209 (350)
T ss_pred HHhhCEEEEcchhhhhcCCCCcEEEECCCCchHHhhh--hhhHHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhc
Confidence 11123232211110 0 0 111122333332221111 11156677776777777766655442 2233 2 2322
Q ss_pred CCcE-EEEeCCCCCC--------CCCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCC--CCChH
Q 001939 246 SGWK-CLVCGASDSQ--------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY--FNEEP 314 (993)
Q Consensus 246 ~~~~-~vv~G~~~~~--------l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~--~~EQ~ 314 (993)
.++. ++++|....+ +.+|+++.+|.++++++|+.||++|+++|.+|+.||+++|+|+|++|.+. ..+|.
T Consensus 210 ~~~~~~~i~G~g~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~ 289 (350)
T cd03785 210 KRLQVIHQTGKGDLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQT 289 (350)
T ss_pred cCeEEEEEcCCccHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHH
Confidence 3454 3466776321 24689999999889999999999999999999999999999999998654 46888
Q ss_pred HHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 315 FLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 315 ~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
.|++.+.+.|.|+.++..+.+++.|.++|.+++.++
T Consensus 290 ~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 290 ANARALVKAGAAVLIPQEELTPERLAAALLELLSDP 325 (350)
T ss_pred HhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCH
Confidence 999999999999999877667899999999998765
No 52
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.80 E-value=2.6e-17 Score=192.33 Aligned_cols=330 Identities=15% Similarity=0.141 Sum_probs=188.4
Q ss_pred cCCCCcccHHHHHHHHHHHH-HCCCeEEEEeCCCCc--ccccccCCCceEEeeeec-cC-CccccCccccChHHHHHHHH
Q 001939 22 VTGHGFGHATRVVEVVRNLI-SAGHDVHVVTGAPDF--VFTSEIQSPRLFIRKVLL-DC-GAVQADALTVDRLASLEKYS 96 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~-~~Gh~V~~v~~~~~~--~~~~~i~~~~~~~~~~~~-~~-g~~~~~~~~~~~~~~~~~~~ 96 (993)
++.++.||++|++.||+.|. .+|+.|+|++..... +.......+.+.+..... ++ |+.... .+ ....+.
T Consensus 11 ~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~---~~---~~~~~~ 84 (481)
T PLN02992 11 FSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPS---AH---VVTKIG 84 (481)
T ss_pred eCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCC---cc---HHHHHH
Confidence 58899999999999999998 789999999776321 111111111222221110 00 111000 01 111111
Q ss_pred HHhhccHHHhHHHHHHHHhc--CCCcEEEECC-CchHHHHHHHcCCcEEEEecCch-hHHHHHHH---------------
Q 001939 97 ETAVAPRKSILKDEVEWLNS--IKADLVVSDV-VPVACRAAADAGIRSVCVTNFSW-DFIYAEYV--------------- 157 (993)
Q Consensus 97 ~~~~~~~~~~l~~~~~~L~~--~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~~-~~~~~~y~--------------- 157 (993)
.. .........++|++ .+|++||+|+ .+|+.-+|+.+|||.+.+...+. ...+..+.
T Consensus 85 ~~----~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~ 160 (481)
T PLN02992 85 VI----MREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHTVQR 160 (481)
T ss_pred HH----HHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccccccCC
Confidence 11 11112233445554 3789999998 78999999999999998733221 00000000
Q ss_pred -----hhccc-chHHH-----------HHH---HHhhccccceeeecCCCCC-------CCC--------CCceeecCcc
Q 001939 158 -----MAAGH-HHRSI-----------VWQ---IAEDYSHCEFLIRLPGYCP-------MPA--------FRDVIDVPLV 202 (993)
Q Consensus 158 -----~~~~~-~~~~i-----------~~~---l~~~y~~~d~ll~~p~~~~-------~p~--------~~~v~~vp~~ 202 (993)
|..+. ....+ ... ....+..++.++.-++... +.. .+.+..|||+
T Consensus 161 ~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~VGPl 240 (481)
T PLN02992 161 KPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVYPIGPL 240 (481)
T ss_pred CCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceEEecCc
Confidence 00000 00000 000 0111222333332111100 000 1246677876
Q ss_pred ccc--CCcChHHHHHHhCCCCCCcEEEEEcCCCCCh-h----hHHHhh--CCCCcEEEEe----CC-------------C
Q 001939 203 VRR--LHKSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEY--LPSGWKCLVC----GA-------------S 256 (993)
Q Consensus 203 ~~~--~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-~----~ll~~l--~~~~~~~vv~----G~-------------~ 256 (993)
... ......+..++|+-.+.+.+|||||||...- . ++...+ .+..+.+++- +. .
T Consensus 241 ~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~ 320 (481)
T PLN02992 241 CRPIQSSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETR 320 (481)
T ss_pred cCCcCCCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccc
Confidence 432 1112234667887655678999999998652 1 233333 2334444441 11 0
Q ss_pred C--C-CCCCC---------eEECCCCCCHH--HHHhhcC--EEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHH
Q 001939 257 D--S-QLPPN---------FIKLPKDAYTP--DFMAASD--CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNML 320 (993)
Q Consensus 257 ~--~-~l~~n---------v~~~~~~~~~p--dlL~~ad--l~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l 320 (993)
. . .+|+| +.+. .|+| ++|+|.. +||||||+||++|++++|||||++| .+.||+.||+++
T Consensus 321 ~~~~~~lp~~f~eR~~~rg~vv~---~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P--~~~DQ~~na~~~ 395 (481)
T PLN02992 321 DNTPEYLPEGFVSRTHDRGFVVP---SWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWP--LFAEQNMNAALL 395 (481)
T ss_pred cchhhhCCHHHHHHhcCCCEEEe---ecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecC--ccchhHHHHHHH
Confidence 0 1 15554 6664 4666 8999855 6999999999999999999999999 789999999999
Q ss_pred -HHcCcEEEEecC--CCChhhHHHHHHHHHhCCCCccCCCCHHHHHHHHHHHHH
Q 001939 321 -EFYQGGVEMIRR--DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (993)
Q Consensus 321 -~~~G~g~~l~~~--~~~~~~l~~~l~~ll~~~~~~~~~~~ga~~~a~~i~~~~ 371 (993)
++.|+|+.++.. .++.+.+.++|++++.++ ......+-|+.+.+.+
T Consensus 396 ~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~-----~g~~~r~~a~~~~~~a 444 (481)
T PLN02992 396 SDELGIAVRSDDPKEVISRSKIEALVRKVMVEE-----EGEEMRRKVKKLRDTA 444 (481)
T ss_pred HHHhCeeEEecCCCCcccHHHHHHHHHHHhcCC-----chHHHHHHHHHHHHHH
Confidence 599999999763 488999999999999765 2234555556666554
No 53
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.79 E-value=4e-18 Score=197.02 Aligned_cols=240 Identities=19% Similarity=0.139 Sum_probs=157.5
Q ss_pred HHHHHHhcCCCcEEEECCCc----hHHHHHHH-----cCCcEEEE-ecCc-----hhH-HHHHHHhhcccchHHHHHHHH
Q 001939 109 DEVEWLNSIKADLVVSDVVP----VACRAAAD-----AGIRSVCV-TNFS-----WDF-IYAEYVMAAGHHHRSIVWQIA 172 (993)
Q Consensus 109 ~~~~~L~~~kPDlVVsD~~~----~a~laA~~-----~gIP~V~i-~~~~-----~~~-~~~~y~~~~~~~~~~i~~~l~ 172 (993)
...+++++++||+||++|+. .+.+++.. .++|++++ +++. |.. ....++.. .+...+.+.
T Consensus 91 ~l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~~~~w~~~~~d~~~~~----s~~~~~~l~ 166 (382)
T PLN02605 91 EVAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTCHPTWFHKGVTRCFCP----SEEVAKRAL 166 (382)
T ss_pred HHHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCcCcccccCCCCEEEEC----CHHHHHHHH
Confidence 44578899999999997744 22333333 37998865 6652 320 00111111 112222222
Q ss_pred hhccccceeeecCCCCCCCCCCceeecCcccc--cCCcChHHHHHHhCCCCCCcEEEEEcCCCCCh--hhHHHhh---C-
Q 001939 173 EDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVR--RLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLKEEY---L- 244 (993)
Q Consensus 173 ~~y~~~d~ll~~p~~~~~p~~~~v~~vp~~~~--~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~~ll~~l---~- 244 (993)
+..... +...++++|+... .+...+.++++.+++++++++|++..|+.+.. ..+++.+ +
T Consensus 167 ~~g~~~-------------~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~ 233 (382)
T PLN02605 167 KRGLEP-------------SQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLY 233 (382)
T ss_pred HcCCCH-------------HHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhc
Confidence 221111 1122334444322 12234567889999988888888888877653 2333322 2
Q ss_pred -----CCCc-EEEEeCCCCCC--------CCCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCC
Q 001939 245 -----PSGW-KCLVCGASDSQ--------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYF 310 (993)
Q Consensus 245 -----~~~~-~~vv~G~~~~~--------l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~ 310 (993)
.++. .++++|.+... ...++++.||+++|+++|++||++|+++|.+|++||+++|+|+|+++....
T Consensus 234 ~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~~~~~l~~aaDv~V~~~g~~ti~EAma~g~PvI~~~~~pg 313 (382)
T PLN02605 234 DKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFVTNMEEWMGACDCIITKAGPGTIAEALIRGLPIILNGYIPG 313 (382)
T ss_pred cccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEeccccHHHHHHhCCEEEECCCcchHHHHHHcCCCEEEecCCCc
Confidence 2344 46788876421 235789999999999999999999999999999999999999999986544
Q ss_pred CChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhC-CCCcc---------CCCCHHHHHHHHHHHH
Q 001939 311 NEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL-KPCYE---------GGINGGEVAAHILQET 370 (993)
Q Consensus 311 ~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~-~~~~~---------~~~~ga~~~a~~i~~~ 370 (993)
+|. .|+..+.+.|.|+.+ -+++.+.++|.+++.+ +.... ..+++++++++.+.+.
T Consensus 314 qe~-gn~~~i~~~g~g~~~----~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 314 QEE-GNVPYVVDNGFGAFS----ESPKEIARIVAEWFGDKSDELEAMSENALKLARPEAVFDIVHDLHEL 378 (382)
T ss_pred cch-hhHHHHHhCCceeec----CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 444 899999999999865 2468899999999987 43211 5788888888888776
No 54
>PLN02562 UDP-glycosyltransferase
Probab=99.79 E-value=2.4e-17 Score=192.67 Aligned_cols=311 Identities=11% Similarity=0.086 Sum_probs=176.7
Q ss_pred cCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-ccccccC-CCceEEeeeeccCCccccCccccChHHHHHHHHHHh
Q 001939 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEIQ-SPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETA 99 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~-~~~~~i~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 99 (993)
++.++.||++|++.||+.|..+|+.|+|+++.... .....+. .+.+.+... ..|.. +....+ ...+...+
T Consensus 12 vPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~l--p~g~~--~~~~~~----~~~l~~a~ 83 (448)
T PLN02562 12 VPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSI--SDGQD--DDPPRD----FFSIENSM 83 (448)
T ss_pred EcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEEC--CCCCC--CCcccc----HHHHHHHH
Confidence 57889999999999999999999999999865411 1111111 112333221 12221 111111 11111111
Q ss_pred hccHHHhHHHHHHHHhcC---C-CcEEEECC-CchHHHHHHHcCCcEEEEecCch-h-HHHH---H-----H--------
Q 001939 100 VAPRKSILKDEVEWLNSI---K-ADLVVSDV-VPVACRAAADAGIRSVCVTNFSW-D-FIYA---E-----Y-------- 156 (993)
Q Consensus 100 ~~~~~~~l~~~~~~L~~~---k-PDlVVsD~-~~~a~laA~~~gIP~V~i~~~~~-~-~~~~---~-----y-------- 156 (993)
... ......+++++. . +++||+|+ .+|+.-+|+.+|||.+.+...+. . ..+. . +
T Consensus 84 ~~~---~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (448)
T PLN02562 84 ENT---MPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCPR 160 (448)
T ss_pred HHh---chHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccccc
Confidence 001 112223344432 2 38999998 78999999999999988733221 0 0000 0 0
Q ss_pred -------Hhhccc----ch----------HHHHHHHH---hhccccceeeecCCCC-------------CCCCCCceeec
Q 001939 157 -------VMAAGH----HH----------RSIVWQIA---EDYSHCEFLIRLPGYC-------------PMPAFRDVIDV 199 (993)
Q Consensus 157 -------~~~~~~----~~----------~~i~~~l~---~~y~~~d~ll~~p~~~-------------~~p~~~~v~~v 199 (993)
.|..+. +. ......+. .....++.++.-++.. +.+..+++..|
T Consensus 161 ~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v~~i 240 (448)
T PLN02562 161 QLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQILQI 240 (448)
T ss_pred cccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCCEEEe
Confidence 000000 00 00011111 1111222222211111 01223567778
Q ss_pred CcccccC-----Cc--Ch--HHHHHHhCCCCCCcEEEEEcCCCCC--hhh----HHHhhCCCCc--EEEEe-C---CCCC
Q 001939 200 PLVVRRL-----HK--SR--KEVRKELGIEDDVKLLILNFGGQPA--GWK----LKEEYLPSGW--KCLVC-G---ASDS 258 (993)
Q Consensus 200 p~~~~~~-----~~--~~--~~~r~~l~~~~~~~~Vlvs~G~~~~--~~~----ll~~l~~~~~--~~vv~-G---~~~~ 258 (993)
|++...+ .. .+ .+..++++-.+.+.+|||+|||... ..+ ++..+...+. .+++- + ...+
T Consensus 241 Gpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~~~l~~ 320 (448)
T PLN02562 241 GPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWREGLPP 320 (448)
T ss_pred cCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCchhhCCH
Confidence 8764321 11 12 2344788765566799999999652 222 2333333333 33332 1 1111
Q ss_pred C----CCCCeEECCCCCCHH--HHHhh--cCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cCcEEEE
Q 001939 259 Q----LPPNFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQGGVEM 329 (993)
Q Consensus 259 ~----l~~nv~~~~~~~~~p--dlL~~--adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~-~G~g~~l 329 (993)
. +++|+.+. +|+| ++|+| +.+||||||+||++|++++|||+|++| .+.||+.||+++++ .|+|+.+
T Consensus 321 ~~~~~~~~~~~v~---~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P--~~~DQ~~na~~~~~~~g~g~~~ 395 (448)
T PLN02562 321 GYVERVSKQGKVV---SWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYP--VAGDQFVNCAYIVDVWKIGVRI 395 (448)
T ss_pred HHHHHhccCEEEE---ecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCC--cccchHHHHHHHHHHhCceeEe
Confidence 1 46788875 4666 89988 558999999999999999999999999 78999999999986 5888777
Q ss_pred ecCCCChhhHHHHHHHHHhCC
Q 001939 330 IRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 330 ~~~~~~~~~l~~~l~~ll~~~ 350 (993)
. +++.+.+.++|++++.++
T Consensus 396 ~--~~~~~~l~~~v~~~l~~~ 414 (448)
T PLN02562 396 S--GFGQKEVEEGLRKVMEDS 414 (448)
T ss_pred C--CCCHHHHHHHHHHHhCCH
Confidence 3 678899999999999654
No 55
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.78 E-value=7.3e-17 Score=190.72 Aligned_cols=150 Identities=17% Similarity=0.236 Sum_probs=106.2
Q ss_pred CceeecCcccc--cC-----CcChHHHHHHhCCCCCCcEEEEEcCCCCC-hh----hHHHhhCCCCcEEE-EeCCC----
Q 001939 194 RDVIDVPLVVR--RL-----HKSRKEVRKELGIEDDVKLLILNFGGQPA-GW----KLKEEYLPSGWKCL-VCGAS---- 256 (993)
Q Consensus 194 ~~v~~vp~~~~--~~-----~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~-~~----~ll~~l~~~~~~~v-v~G~~---- 256 (993)
+.+..||++.. .+ ...+.++.++++-.+.+++|||||||... .. +++..+...++.++ +++..
T Consensus 238 ~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~ 317 (481)
T PLN02554 238 PPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNI 317 (481)
T ss_pred CCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccc
Confidence 46777888732 21 12345688888766667899999999754 22 23333433344332 22210
Q ss_pred ---------C-CC-CC--------CCeEECCCCCCHH--HHHhh--cCEEEecCChhHHHHHHHcCCcEEEEeCCCCCCh
Q 001939 257 ---------D-SQ-LP--------PNFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEE 313 (993)
Q Consensus 257 ---------~-~~-l~--------~nv~~~~~~~~~p--dlL~~--adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ 313 (993)
. .. +| +|+.+. +|+| ++|+| +++||||||+||+.|++++|||||++| .+.||
T Consensus 318 ~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~---~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P--~~~DQ 392 (481)
T PLN02554 318 MKEPPGEFTNLEEILPEGFLDRTKDIGKVI---GWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWP--LYAEQ 392 (481)
T ss_pred cccccccccchhhhCChHHHHHhccCceEE---eeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecC--ccccc
Confidence 0 01 23 355553 5777 79954 888999999999999999999999999 78999
Q ss_pred HHHH-HHHHHcCcEEEEec-----------CCCChhhHHHHHHHHHh
Q 001939 314 PFLR-NMLEFYQGGVEMIR-----------RDLLTGHWKPYLERAIS 348 (993)
Q Consensus 314 ~~na-~~l~~~G~g~~l~~-----------~~~~~~~l~~~l~~ll~ 348 (993)
+.|| ..++..|+|+.+.. ..++.+++.++|++++.
T Consensus 393 ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 393 KFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLME 439 (481)
T ss_pred hhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhc
Confidence 9999 55789999999863 35788999999999995
No 56
>PLN03004 UDP-glycosyltransferase
Probab=99.78 E-value=1.5e-16 Score=185.00 Aligned_cols=163 Identities=12% Similarity=0.156 Sum_probs=113.4
Q ss_pred ceeecCcccccCC----cC--hHHHHHHhCCCCCCcEEEEEcCCCCC-hh----hHHHhhC--CCCcEEEEeCCC-----
Q 001939 195 DVIDVPLVVRRLH----KS--RKEVRKELGIEDDVKLLILNFGGQPA-GW----KLKEEYL--PSGWKCLVCGAS----- 256 (993)
Q Consensus 195 ~v~~vp~~~~~~~----~~--~~~~r~~l~~~~~~~~Vlvs~G~~~~-~~----~ll~~l~--~~~~~~vv~G~~----- 256 (993)
.+..|||....+. .. ..+..++|+-.+++.+|||||||... .. ++...+. +..+.+++-...
T Consensus 236 ~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~ 315 (451)
T PLN03004 236 NIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKT 315 (451)
T ss_pred CEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccc
Confidence 5667887643111 01 12466788866678899999999854 22 2333333 233333332221
Q ss_pred ---CCC-CC---------CCeEECCCCCCHH--HHHhhcCE--EEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHH
Q 001939 257 ---DSQ-LP---------PNFIKLPKDAYTP--DFMAASDC--MLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNM 319 (993)
Q Consensus 257 ---~~~-l~---------~nv~~~~~~~~~p--dlL~~adl--~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~ 319 (993)
... +| .|+.+. +|+| ++|+|+++ ||||||+||++|++++|||||++| .+.||+.||++
T Consensus 316 ~~~~~~~lp~gf~er~~~~g~~v~---~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P--~~~DQ~~na~~ 390 (451)
T PLN03004 316 ELDLKSLLPEGFLSRTEDKGMVVK---SWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWP--LYAEQRFNRVM 390 (451)
T ss_pred ccchhhhCChHHHHhccCCcEEEE---eeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEecc--ccccchhhHHH
Confidence 111 44 677775 4666 89999777 999999999999999999999999 78999999999
Q ss_pred HHH-cCcEEEEecC---CCChhhHHHHHHHHHhCCCCccCCCCHHHHHHHHHHHH
Q 001939 320 LEF-YQGGVEMIRR---DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQET 370 (993)
Q Consensus 320 l~~-~G~g~~l~~~---~~~~~~l~~~l~~ll~~~~~~~~~~~ga~~~a~~i~~~ 370 (993)
+++ .|+|+.++.. .++.+.+.++|++++.++ ..++-|..|.+.
T Consensus 391 ~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~--------~~r~~a~~~~~~ 437 (451)
T PLN03004 391 IVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC--------PVRERTMAMKNA 437 (451)
T ss_pred HHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH--------HHHHHHHHHHHH
Confidence 985 6999999754 468899999999999653 244444555554
No 57
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.77 E-value=7.1e-18 Score=195.44 Aligned_cols=242 Identities=16% Similarity=0.136 Sum_probs=157.4
Q ss_pred HHHHHHHhcCCCcEEEECCCchHHHHH---HHcCCcEEEE-ecCc----hhHH-HHHHHhhcccchHHHHHHHHhhcccc
Q 001939 108 KDEVEWLNSIKADLVVSDVVPVACRAA---ADAGIRSVCV-TNFS----WDFI-YAEYVMAAGHHHRSIVWQIAEDYSHC 178 (993)
Q Consensus 108 ~~~~~~L~~~kPDlVVsD~~~~a~laA---~~~gIP~V~i-~~~~----~~~~-~~~y~~~~~~~~~~i~~~l~~~y~~~ 178 (993)
....++|++++||+||++++....... ...++|++++ +++. |... ...++.. .+...+.+.+....
T Consensus 94 ~~l~~~l~~~kPDvVi~~~p~~~~~~l~~~~~~~iP~~~v~td~~~~~~w~~~~~d~~~v~----s~~~~~~l~~~gi~- 168 (391)
T PRK13608 94 NKLINLLIKEKPDLILLTFPTPVMSVLTEQFNINIPVATVMTDYRLHKNWITPYSTRYYVA----TKETKQDFIDVGID- 168 (391)
T ss_pred HHHHHHHHHhCcCEEEECCcHHHHHHHHHhcCCCCCEEEEeCCCCcccccccCCCCEEEEC----CHHHHHHHHHcCCC-
Confidence 455788999999999998754332211 2347998766 5543 2110 0111110 11222222211101
Q ss_pred ceeeecCCCCCCCCCCceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCCh---hhHHHhhC--CCCcEE-E
Q 001939 179 EFLIRLPGYCPMPAFRDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEEYL--PSGWKC-L 251 (993)
Q Consensus 179 d~ll~~p~~~~~p~~~~v~~vp~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~---~~ll~~l~--~~~~~~-v 251 (993)
+....++++|+.... ....+.++++.+++++++++|+++.|+.+.. ..+++.++ .+++.+ +
T Consensus 169 ------------~~ki~v~GiPv~~~f~~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~~~~~~~~~~vv 236 (391)
T PRK13608 169 ------------PSTVKVTGIPIDNKFETPIDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDILAKSANAQVVM 236 (391)
T ss_pred ------------HHHEEEECeecChHhcccccHHHHHHHcCCCCCCCEEEEECCCcccchhHHHHHHHHHhcCCCceEEE
Confidence 111223455543221 1223456778889888888999999988742 23444432 245555 5
Q ss_pred EeCCCCC---C------CCCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH
Q 001939 252 VCGASDS---Q------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF 322 (993)
Q Consensus 252 v~G~~~~---~------l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~ 322 (993)
++|.+.. . ..+|+++.||+++|+++|+.||++|+++|..|++||+++|+|+|++...+. +|..|+..+++
T Consensus 237 v~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aDl~I~k~gg~tl~EA~a~G~PvI~~~~~pg-qe~~N~~~~~~ 315 (391)
T PRK13608 237 ICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMASSQLMITKPGGITISEGLARCIPMIFLNPAPG-QELENALYFEE 315 (391)
T ss_pred EcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHHHhhhEEEeCCchHHHHHHHHhCCCEEECCCCCC-cchhHHHHHHh
Confidence 6776532 1 246899999999999999999999999999999999999999999842222 34589999999
Q ss_pred cCcEEEEecCCCChhhHHHHHHHHHhCCCCcc---------CCCCHHHHHHHHHHHHH
Q 001939 323 YQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQETA 371 (993)
Q Consensus 323 ~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~ga~~~a~~i~~~~ 371 (993)
.|+|+... +++.+.++|.++++++..+. ..+++++++++.|.+.+
T Consensus 316 ~G~g~~~~----~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 316 KGFGKIAD----TPEEAIKIVASLTNGNEQLTNMISTMEQDKIKYATQTICRDLLDLI 369 (391)
T ss_pred CCcEEEeC----CHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Confidence 99998754 35788899999997764321 56788888888888875
No 58
>PLN02555 limonoid glucosyltransferase
Probab=99.77 E-value=2.5e-16 Score=184.55 Aligned_cols=318 Identities=16% Similarity=0.127 Sum_probs=177.0
Q ss_pred cCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-cccc--cc-C-------CCceEEeeeeccCCccccCccccChHH
Q 001939 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTS--EI-Q-------SPRLFIRKVLLDCGAVQADALTVDRLA 90 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~-~~~~--~i-~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~ 90 (993)
++.++.||++|++.||+.|..+|..|||++..... .... .+ . ...+.++. +..|+........+.
T Consensus 13 ~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~--~pdglp~~~~~~~~~-- 88 (480)
T PLN02555 13 VSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEF--FEDGWAEDDPRRQDL-- 88 (480)
T ss_pred ECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEee--CCCCCCCCcccccCH--
Confidence 57889999999999999999999999999776311 1110 00 0 01122221 111321100000011
Q ss_pred HHHHHHHHhhccHHHhHHHHHHHHh-cCCC-cEEEECC-CchHHHHHHHcCCcEEEEecCc-h-hHHHHHH---------
Q 001939 91 SLEKYSETAVAPRKSILKDEVEWLN-SIKA-DLVVSDV-VPVACRAAADAGIRSVCVTNFS-W-DFIYAEY--------- 156 (993)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~L~-~~kP-DlVVsD~-~~~a~laA~~~gIP~V~i~~~~-~-~~~~~~y--------- 156 (993)
..+...+.......+.+.++.+. ..+| ++||+|. .+|+.-+|+.+|||.+.+...+ . ...+..+
T Consensus 89 --~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~~~~~ 166 (480)
T PLN02555 89 --DLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLVPFPT 166 (480)
T ss_pred --HHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCCCccc
Confidence 11111110011111222222222 1345 9999998 7899999999999998862221 0 0011000
Q ss_pred ---------Hhhccc----c----------hHHHHHHHHh---hccccceeeecCCCCC-------CCCCCceeecCccc
Q 001939 157 ---------VMAAGH----H----------HRSIVWQIAE---DYSHCEFLIRLPGYCP-------MPAFRDVIDVPLVV 203 (993)
Q Consensus 157 ---------~~~~~~----~----------~~~i~~~l~~---~y~~~d~ll~~p~~~~-------~p~~~~v~~vp~~~ 203 (993)
+|..+. + .......+.+ ....++.++.-++... +.....+..+||..
T Consensus 167 ~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~v~~iGPl~ 246 (480)
T PLN02555 167 ETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLCPIKPVGPLF 246 (480)
T ss_pred ccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCCCEEEeCccc
Confidence 000000 0 0000111111 1112222222122110 00011256677753
Q ss_pred cc---C-C-------cChHHHHHHhCCCCCCcEEEEEcCCCCCh-----hhHHHhhCCCCcEEE-EeCC------CC---
Q 001939 204 RR---L-H-------KSRKEVRKELGIEDDVKLLILNFGGQPAG-----WKLKEEYLPSGWKCL-VCGA------SD--- 257 (993)
Q Consensus 204 ~~---~-~-------~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-----~~ll~~l~~~~~~~v-v~G~------~~--- 257 (993)
.. + . ....++.++++-.+.+.+|||+|||...- .++...+...+..++ ++.. ..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~ 326 (480)
T PLN02555 247 KMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHV 326 (480)
T ss_pred CccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhc
Confidence 21 1 0 11245667887655667999999997642 233334444444433 2221 10
Q ss_pred -C-C----CCCCeEECCCCCCHH--HHHhh--cCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-CcE
Q 001939 258 -S-Q----LPPNFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY-QGG 326 (993)
Q Consensus 258 -~-~----l~~nv~~~~~~~~~p--dlL~~--adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~-G~g 326 (993)
+ . .++|..+. .|+| ++|+| +.+||||||+||++||+++|||||++| .+.||+.|++++++. |+|
T Consensus 327 lp~~~~~~~~~~g~v~---~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P--~~~DQ~~Na~~~~~~~gvG 401 (480)
T PLN02555 327 LPEEFLEKAGDKGKIV---QWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFP--QWGDQVTDAVYLVDVFKTG 401 (480)
T ss_pred CChhhhhhcCCceEEE---ecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCC--CccccHHHHHHHHHHhCce
Confidence 1 1 24567665 4666 78966 999999999999999999999999999 789999999999876 999
Q ss_pred EEEe-----cCCCChhhHHHHHHHHHhCC
Q 001939 327 VEMI-----RRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 327 ~~l~-----~~~~~~~~l~~~l~~ll~~~ 350 (993)
+.+. ...++.+.+..+|++++.++
T Consensus 402 v~l~~~~~~~~~v~~~~v~~~v~~vm~~~ 430 (480)
T PLN02555 402 VRLCRGEAENKLITREEVAECLLEATVGE 430 (480)
T ss_pred EEccCCccccCcCcHHHHHHHHHHHhcCc
Confidence 9994 34578899999999999654
No 59
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.77 E-value=2.2e-16 Score=185.53 Aligned_cols=316 Identities=14% Similarity=0.137 Sum_probs=177.4
Q ss_pred cCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-cccccc-CCCceEEeeeec--cCCccccCccc-c-ChH-HHHHH
Q 001939 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEI-QSPRLFIRKVLL--DCGAVQADALT-V-DRL-ASLEK 94 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~-~~~~~i-~~~~~~~~~~~~--~~g~~~~~~~~-~-~~~-~~~~~ 94 (993)
++.++.||++|++.||+.|..+|+.|+|+++.... ...... ..+.+.+....+ ..++. ++.. . +.. .....
T Consensus 15 ~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lP--dG~~~~~~~~~~~~~~ 92 (477)
T PLN02863 15 FPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIP--SGVENVKDLPPSGFPL 92 (477)
T ss_pred ecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCC--CCCcChhhcchhhHHH
Confidence 57889999999999999999999999999775321 001100 011222211100 00111 0110 0 100 00111
Q ss_pred HHHHhhccHHHhHHHHHHHHhc--CCCcEEEECC-CchHHHHHHHcCCcEEEEecCc-hh-HHHHHH-------------
Q 001939 95 YSETAVAPRKSILKDEVEWLNS--IKADLVVSDV-VPVACRAAADAGIRSVCVTNFS-WD-FIYAEY------------- 156 (993)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~--~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~-~~-~~~~~y------------- 156 (993)
+.. ..........++|++ .+|++||+|. .+|+.-+|+.+|||.+.+...+ .. ..|..+
T Consensus 93 ~~~----a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~~~~~ 168 (477)
T PLN02863 93 MIH----ALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKINPDDQ 168 (477)
T ss_pred HHH----HHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccccccccccc
Confidence 111 111222333445554 3679999998 8899999999999999873322 11 000000
Q ss_pred --------Hhhccc-ch-------------HHHHHHHHhhc---cccceeeecCCCCC-------C-CCC--CceeecCc
Q 001939 157 --------VMAAGH-HH-------------RSIVWQIAEDY---SHCEFLIRLPGYCP-------M-PAF--RDVIDVPL 201 (993)
Q Consensus 157 --------~~~~~~-~~-------------~~i~~~l~~~y---~~~d~ll~~p~~~~-------~-p~~--~~v~~vp~ 201 (993)
+|..+. .. +.....+.+.. ..++.++.-.+... + ..+ +.+..|||
T Consensus 169 ~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v~~IGP 248 (477)
T PLN02863 169 NEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDRVWAVGP 248 (477)
T ss_pred ccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCCeEEeCC
Confidence 000000 00 00011111111 11221221111100 0 111 34666777
Q ss_pred ccccC--C-----------cChHHHHHHhCCCCCCcEEEEEcCCCCCh-----hhHHHhhCCCCcEEE-EeCCCC-----
Q 001939 202 VVRRL--H-----------KSRKEVRKELGIEDDVKLLILNFGGQPAG-----WKLKEEYLPSGWKCL-VCGASD----- 257 (993)
Q Consensus 202 ~~~~~--~-----------~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-----~~ll~~l~~~~~~~v-v~G~~~----- 257 (993)
..... . ...+++.++++..+++++|||||||...- .+++..+...++.++ +++...
T Consensus 249 L~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~ 328 (477)
T PLN02863 249 ILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESD 328 (477)
T ss_pred CcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccc
Confidence 64211 0 01346778888766788999999998542 233334444455333 444211
Q ss_pred -CCCCC---------CeEECCCCCCHH--HHHhh--cCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHH-H
Q 001939 258 -SQLPP---------NFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLE-F 322 (993)
Q Consensus 258 -~~l~~---------nv~~~~~~~~~p--dlL~~--adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~-~ 322 (993)
..+|. |+.+.+ |+| ++|+| +++||||||+||++||+++|||+|++| .+.||+.|+++++ .
T Consensus 329 ~~~lp~~~~~r~~~~g~~v~~---w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P--~~~DQ~~na~~v~~~ 403 (477)
T PLN02863 329 YSNIPSGFEDRVAGRGLVIRG---WAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWP--MAADQFVNASLLVDE 403 (477)
T ss_pred hhhCCHHHHHHhccCCEEecC---CCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCC--ccccchhhHHHHHHh
Confidence 11443 455544 555 79987 899999999999999999999999999 7899999999976 5
Q ss_pred cCcEEEEecC---CCChhhHHHHHHHHHh
Q 001939 323 YQGGVEMIRR---DLLTGHWKPYLERAIS 348 (993)
Q Consensus 323 ~G~g~~l~~~---~~~~~~l~~~l~~ll~ 348 (993)
.|+|+.+... ..+.+++..+|++++.
T Consensus 404 ~gvG~~~~~~~~~~~~~~~v~~~v~~~m~ 432 (477)
T PLN02863 404 LKVAVRVCEGADTVPDSDELARVFMESVS 432 (477)
T ss_pred hceeEEeccCCCCCcCHHHHHHHHHHHhh
Confidence 7999988532 2467889999999874
No 60
>PLN02207 UDP-glycosyltransferase
Probab=99.76 E-value=2.1e-16 Score=184.36 Aligned_cols=324 Identities=11% Similarity=0.076 Sum_probs=180.6
Q ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHCC--CeEEEEeCCCCc--ccccccC-----CCceEEeeeeccCCccccC-
Q 001939 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAG--HDVHVVTGAPDF--VFTSEIQ-----SPRLFIRKVLLDCGAVQAD- 82 (993)
Q Consensus 13 m~~~~Il~~v~g~G~GH~~ralaLA~aL~~~G--h~V~~v~~~~~~--~~~~~i~-----~~~~~~~~~~~~~g~~~~~- 82 (993)
|++.++++ ++..|.||+.|++.||+.|..+| ..|+|++..... .....+. .+.+.+.... .+.....
T Consensus 1 ~~~~hvv~-~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp--~~~~~~~~ 77 (468)
T PLN02207 1 MRNAELIF-IPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVP--ELEEKPTL 77 (468)
T ss_pred CCCcEEEE-eCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeC--CCCCCCcc
Confidence 44545543 57899999999999999999998 889988665311 1111111 1123332221 1110000
Q ss_pred ccccChHHHHHHHHHHhhccHHHhHHHHHHHHhc----CCC-cEEEECC-CchHHHHHHHcCCcEEEEecCc-hh-HHHH
Q 001939 83 ALTVDRLASLEKYSETAVAPRKSILKDEVEWLNS----IKA-DLVVSDV-VPVACRAAADAGIRSVCVTNFS-WD-FIYA 154 (993)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~----~kP-DlVVsD~-~~~a~laA~~~gIP~V~i~~~~-~~-~~~~ 154 (993)
....+.. ..+........+.......+++++ .+| ++||+|. .+|+.-+|+.+|||.+.+...+ .. ..+.
T Consensus 78 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~ 154 (468)
T PLN02207 78 GGTQSVE---AYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQ 154 (468)
T ss_pred ccccCHH---HHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 0000111 111111100000001112233332 245 8999998 7899999999999998873322 10 0000
Q ss_pred HH--------------------Hhhcccc---------------hHHHHHHHHhhccccceeeecCCCC-C---------
Q 001939 155 EY--------------------VMAAGHH---------------HRSIVWQIAEDYSHCEFLIRLPGYC-P--------- 189 (993)
Q Consensus 155 ~y--------------------~~~~~~~---------------~~~i~~~l~~~y~~~d~ll~~p~~~-~--------- 189 (993)
.+ +|..+.. ...+.+.+ .....++.++.-.+.. .
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~~vlvNtf~~LE~~~~~~~~~ 233 (468)
T PLN02207 155 YLADRHSKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVEDGYDAYVKLA-ILFTKANGILVNSSFDIEPYSVNHFLD 233 (468)
T ss_pred HhhhccccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCccHHHHHHHH-HhcccCCEEEEEchHHHhHHHHHHHHh
Confidence 00 0000000 00001111 1122233333211110 0
Q ss_pred CCCCCceeecCcccc-cCCc-------ChHHHHHHhCCCCCCcEEEEEcCCCCCh-h----hHHHhhCCCCc--EEEEeC
Q 001939 190 MPAFRDVIDVPLVVR-RLHK-------SRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGW--KCLVCG 254 (993)
Q Consensus 190 ~p~~~~v~~vp~~~~-~~~~-------~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-~----~ll~~l~~~~~--~~vv~G 254 (993)
.+..+++..|||+.. .... ..+++.++++-.+.+.+|||||||...- . ++...+...+. .+++-+
T Consensus 234 ~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~ 313 (468)
T PLN02207 234 EQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRT 313 (468)
T ss_pred ccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 123356778888653 1111 1246778888766678999999997652 2 23333433333 333332
Q ss_pred CCC--CC-C--------CCCeEECCCCCCHH--HHHhh--cCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHH
Q 001939 255 ASD--SQ-L--------PPNFIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNM 319 (993)
Q Consensus 255 ~~~--~~-l--------~~nv~~~~~~~~~p--dlL~~--adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~ 319 (993)
... .. + ++|..+. .|+| ++|+| +.+||||||+|+++|++++|||||++| .+.||+.|+++
T Consensus 314 ~~~~~~~~lp~~f~er~~~~g~i~---~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P--~~~DQ~~Na~~ 388 (468)
T PLN02207 314 EEVTNDDLLPEGFLDRVSGRGMIC---GWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWP--MYAEQQLNAFL 388 (468)
T ss_pred CCccccccCCHHHHhhcCCCeEEE---EeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecC--ccccchhhHHH
Confidence 211 11 2 4556664 5666 79998 677999999999999999999999999 88999999998
Q ss_pred HHH-cCcEEEEec-------CCCChhhHHHHHHHHHh
Q 001939 320 LEF-YQGGVEMIR-------RDLLTGHWKPYLERAIS 348 (993)
Q Consensus 320 l~~-~G~g~~l~~-------~~~~~~~l~~~l~~ll~ 348 (993)
+++ .|+|+.+.. ..++.+++..+|++++.
T Consensus 389 ~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 389 MVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred HHHHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 876 899987632 13478899999999995
No 61
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.76 E-value=2.8e-17 Score=190.00 Aligned_cols=325 Identities=14% Similarity=0.079 Sum_probs=187.8
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCccc---ccccC---CCceEEeeeeccCCccccCccccChH
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVF---TSEIQ---SPRLFIRKVLLDCGAVQADALTVDRL 89 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~---~~~i~---~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (993)
++|+++..+.|.||..++.+|+++|+++||+|++++..-.... ..... ...+.+.+..+...+...... ...
T Consensus 5 ~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~--~~~ 82 (380)
T PRK13609 5 PKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKI--YDK 82 (380)
T ss_pred CeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCcc--cch
Confidence 4677788899999999999999999999998766644311000 00000 000000010000000000000 000
Q ss_pred HHHHHHHHHhhccHHHhHHHHHHHHhcCCCcEEEECCCchHHHH---HHHcCCcEEEE-ecCc----hhH-HHHHHHhhc
Q 001939 90 ASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRA---AADAGIRSVCV-TNFS----WDF-IYAEYVMAA 160 (993)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~a~la---A~~~gIP~V~i-~~~~----~~~-~~~~y~~~~ 160 (993)
.. .. ++ .........+++++++||+||+++++.+... +...++|++.+ +++. |.. ..+.++..
T Consensus 83 ~~-~~---~~---~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~td~~~~~~~~~~~ad~i~~~- 154 (380)
T PRK13609 83 KI-FS---WY---ANFGRKRLKLLLQAEKPDIVINTFPIIAVPELKKQTGISIPTYNVLTDFCLHKIWVHREVDRYFVA- 154 (380)
T ss_pred HH-HH---HH---HHHHHHHHHHHHHHhCcCEEEEcChHHHHHHHHHhcCCCCCeEEEeCCCCCCcccccCCCCEEEEC-
Confidence 00 00 10 1111345578899999999999875443322 22346998754 4432 210 00001100
Q ss_pred ccchHHHHHHHHhhccccceeeecCCCCCCCCCCceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCCh---
Q 001939 161 GHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAG--- 236 (993)
Q Consensus 161 ~~~~~~i~~~l~~~y~~~d~ll~~p~~~~~p~~~~v~~vp~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~--- 236 (993)
.+.+.+.+.+.... +....++++|+.... ....+..+++.+++++++++|+++.|+.+..
T Consensus 155 ---s~~~~~~l~~~gi~-------------~~ki~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~ 218 (380)
T PRK13609 155 ---TDHVKKVLVDIGVP-------------PEQVVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNV 218 (380)
T ss_pred ---CHHHHHHHHHcCCC-------------hhHEEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCH
Confidence 11122222211100 111123344443221 1223455778889887888888888887652
Q ss_pred hhHHHhhCC-CCcEEE-EeCCCCC----------CCCCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEE
Q 001939 237 WKLKEEYLP-SGWKCL-VCGASDS----------QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVF 304 (993)
Q Consensus 237 ~~ll~~l~~-~~~~~v-v~G~~~~----------~l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ 304 (993)
..+++.+.. ++++++ ++|.+.+ ..++||++.||+++++++|++||++|+++|..|+.||+++|+|+|+
T Consensus 219 ~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v~~~gg~t~~EA~a~g~PvI~ 298 (380)
T PRK13609 219 KELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMITKPGGITLSEAAALGVPVIL 298 (380)
T ss_pred HHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEEeCCCchHHHHHHHhCCCEEE
Confidence 234444422 456655 5575421 1356899999999999999999999999998999999999999998
Q ss_pred EeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc---------CCCCHHHHHHHHHHHHH
Q 001939 305 VRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQETA 371 (993)
Q Consensus 305 ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~ga~~~a~~i~~~~ 371 (993)
+.... ..|..|+..+++.|+++... +++.+.++|.++++++..+. ..++.++++++.+++.+
T Consensus 299 ~~~~~-g~~~~n~~~~~~~G~~~~~~----~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~ 369 (380)
T PRK13609 299 YKPVP-GQEKENAMYFERKGAAVVIR----DDEEVFAKTEALLQDDMKLLQMKEAMKSLYLPEPADHIVDDILAEN 369 (380)
T ss_pred CCCCC-CcchHHHHHHHhCCcEEEEC----CHHHHHHHHHHHHCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHhh
Confidence 64212 23458999999999997653 35788999999998764321 45678888888888764
No 62
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.76 E-value=5.2e-17 Score=181.09 Aligned_cols=278 Identities=13% Similarity=0.109 Sum_probs=176.1
Q ss_pred EEcCcccccc----ccccc-ccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCC
Q 001939 500 ARAPGRLDVM----GGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNR 574 (993)
Q Consensus 500 ~~APGRv~L~----GeH~d-y~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~ 574 (993)
.+||+||||+ |..-| ||.-..+-++|+++-++.+.+.+.. .+.+...
T Consensus 3 ~~a~aKiNl~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~~~~---------------------~i~~~~~------- 54 (300)
T PRK03188 3 VRAPAKVNLHLGVGPLRDDGYHELATVFQAVSLYDEVTVTAADVL---------------------SVEVSGE------- 54 (300)
T ss_pred EeecceEEEeeccCCcCCCCccchHhhheehhhccEEEEEECCCc---------------------EEEEecC-------
Confidence 4799999987 44444 7777788889999999988875321 1111100
Q ss_pred CCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHH
Q 001939 575 GPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEV 654 (993)
Q Consensus 575 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~V 654 (993)
....+ | ..-.|.++.++..++++++.. .+++|.|.++||+++|||||||.++
T Consensus 55 ------~~~~~-----~---------------~~~~nl~~~~~~~~~~~~~~~--~~~~I~i~s~IP~~~GLGSSSA~a~ 106 (300)
T PRK03188 55 ------GADQV-----P---------------TDESNLAWRAAELLAEHVGRA--PDVHLHIDKGIPVAGGMAGGSADAA 106 (300)
T ss_pred ------CccCC-----C---------------CCCccHHHHHHHHHHHHhCCC--CCeEEEEEcCCcccCcchHHHHHHH
Confidence 00000 0 011466677777777777753 6899999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCCC
Q 001939 655 ASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGI 734 (993)
Q Consensus 655 a~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv 734 (993)
|++.|++.++|.++++++|+++|.++| .|..++++||. ++...+. +...++..+.++.++++..+.
T Consensus 107 A~l~al~~~~g~~ls~~el~~~a~~ig----------~dv~~~~~GG~---~~~~~~g-~~~~~~~~~~~~~~~lv~p~~ 172 (300)
T PRK03188 107 AALVACDALWGLGLSRDELLELAAELG----------SDVPFALLGGT---ALGTGRG-EQLAPVLARGTFHWVLAFADG 172 (300)
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhC----------CCcchhhcCCe---EEEEecC-CEEEECCCCCCcEEEEEeCCC
Confidence 999999999999999999999998864 26667889984 3433332 222344444455555543322
Q ss_pred ccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCC
Q 001939 735 RHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIP 814 (993)
Q Consensus 735 ~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp 814 (993)
.-+|.. .| + .++
T Consensus 173 ~~sT~~-~~--------------~-----------------------------------------------------~l~ 184 (300)
T PRK03188 173 GLSTPA-VF--------------R-----------------------------------------------------ELD 184 (300)
T ss_pred CCCHHH-HH--------------H-----------------------------------------------------hch
Confidence 112210 00 0 000
Q ss_pred ccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhhhhcCCC
Q 001939 815 ESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSACGLG 894 (993)
Q Consensus 815 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~slr~~~vs 894 (993)
+.. +. ..+....++..+..++.++ |++.+|++|+..-+.++-. .
T Consensus 185 ~~~-----------------------------~~-~~~~~~~~~~~~~~al~~~----d~~~l~~~~~n~le~~~~~--~ 228 (300)
T PRK03188 185 RLR-----------------------------EA-GDPPRLGEPDPLLAALRAG----DPAQLAPLLGNDLQAAALS--L 228 (300)
T ss_pred hhh-----------------------------cc-ccccccccHHHHHHHHHcC----CHHHHHHHhhCcCHHHHHH--h
Confidence 000 00 0000011356778888886 9999999996432332222 4
Q ss_pred CchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCcEEee
Q 001939 895 SDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG 969 (993)
Q Consensus 895 ~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~ 969 (993)
+|+++++++.+++ .|++|++|||+| +|++++.++.. ..+++.+...+ .|....+++.
T Consensus 229 ~p~l~~l~~~~~~-----------~Galga~lSGsG--~tv~~l~~~~~----~~~~~~~~l~~-~g~~~~~~~~ 285 (300)
T PRK03188 229 RPSLRRTLRAGEE-----------AGALAGIVSGSG--PTCAFLCADAD----SAVDVAAALSG-AGVCRTVRVA 285 (300)
T ss_pred CchHHHHHHHHHH-----------CCCCEEEEEccc--cceEEEeCCHH----HHHHHHHHHHh-cCcceeEEEe
Confidence 9999999999987 689999999998 56666655422 23455555543 3555566653
No 63
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.75 E-value=4.3e-16 Score=183.86 Aligned_cols=152 Identities=14% Similarity=0.207 Sum_probs=107.8
Q ss_pred CceeecCcccc-cC---Cc----ChHHHHHHhCCCCCCcEEEEEcCCCCC-hh----hHHHhhCCCCcEEE-EeCCC-C-
Q 001939 194 RDVIDVPLVVR-RL---HK----SRKEVRKELGIEDDVKLLILNFGGQPA-GW----KLKEEYLPSGWKCL-VCGAS-D- 257 (993)
Q Consensus 194 ~~v~~vp~~~~-~~---~~----~~~~~r~~l~~~~~~~~Vlvs~G~~~~-~~----~ll~~l~~~~~~~v-v~G~~-~- 257 (993)
+.+..|||+.. .. .. ...++.++++-.+.+++|||||||... .. ++...+...++.++ +++.. .
T Consensus 243 p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~ 322 (475)
T PLN02167 243 PPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAE 322 (475)
T ss_pred CeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCccc
Confidence 45667877642 11 11 124677888876677899999999754 21 33334433444433 33321 1
Q ss_pred ----C-CCCCCe--------EECCCCCCHH--HHHhh--cCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHH-
Q 001939 258 ----S-QLPPNF--------IKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNM- 319 (993)
Q Consensus 258 ----~-~l~~nv--------~~~~~~~~~p--dlL~~--adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~- 319 (993)
. .+|+|+ .+. .|+| ++|+| +++||||||+||++|++++|||||++| .+.||+.|+++
T Consensus 323 ~~~~~~~lp~~~~er~~~rg~v~---~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P--~~~DQ~~na~~~ 397 (475)
T PLN02167 323 YASPYEPLPEGFMDRVMGRGLVC---GWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWP--MYAEQQLNAFTM 397 (475)
T ss_pred ccchhhhCChHHHHHhccCeeee---ccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecc--ccccchhhHHHH
Confidence 0 156553 343 5777 78988 779999999999999999999999999 78999999976
Q ss_pred HHHcCcEEEEecC-------CCChhhHHHHHHHHHhCC
Q 001939 320 LEFYQGGVEMIRR-------DLLTGHWKPYLERAISLK 350 (993)
Q Consensus 320 l~~~G~g~~l~~~-------~~~~~~l~~~l~~ll~~~ 350 (993)
++..|+|+.+... .++.+.+.++|++++.+.
T Consensus 398 ~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~ 435 (475)
T PLN02167 398 VKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE 435 (475)
T ss_pred HHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC
Confidence 6799999988642 468899999999999653
No 64
>PLN00164 glucosyltransferase; Provisional
Probab=99.75 E-value=4.1e-16 Score=183.74 Aligned_cols=338 Identities=12% Similarity=0.096 Sum_probs=188.5
Q ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHCC----CeEEEEeCCCCcc-----cccccC-----CCceEEeeeeccCCc
Q 001939 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAG----HDVHVVTGAPDFV-----FTSEIQ-----SPRLFIRKVLLDCGA 78 (993)
Q Consensus 13 m~~~~Il~~v~g~G~GH~~ralaLA~aL~~~G----h~V~~v~~~~~~~-----~~~~i~-----~~~~~~~~~~~~~g~ 78 (993)
|.+.+|++ ++.++.||++|++.||+.|..+| +.|+|++...... ....+. ...+.+... ..+.
T Consensus 1 ~~~~HVVl-vPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l--p~~~ 77 (480)
T PLN00164 1 MAAPTVVL-LPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHL--PAVE 77 (480)
T ss_pred CCCCEEEE-eCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEEC--CCCC
Confidence 44445543 57889999999999999999986 6899887543110 111110 001222221 1111
Q ss_pred cccCccccChHHHHHHHHHHhhccHHHhHHHHHHHHhcC--CCcEEEECC-CchHHHHHHHcCCcEEEEecCc-hh-HHH
Q 001939 79 VQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSI--KADLVVSDV-VPVACRAAADAGIRSVCVTNFS-WD-FIY 153 (993)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~--kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~-~~-~~~ 153 (993)
...+ .. . ...+...+ .........++|++. ++++||+|. .+|+.-+|+.+|||.+.+...+ .. ..+
T Consensus 78 ~p~~---~e--~-~~~~~~~~---~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~ 148 (480)
T PLN00164 78 PPTD---AA--G-VEEFISRY---IQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALM 148 (480)
T ss_pred CCCc---cc--c-HHHHHHHH---HHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHH
Confidence 1000 00 0 11111101 111112234455543 459999998 7899999999999999873222 10 000
Q ss_pred HHH-------------------Hhhccc----c------------hHHHHHHHHhhccccceeeecCCCCC-------C-
Q 001939 154 AEY-------------------VMAAGH----H------------HRSIVWQIAEDYSHCEFLIRLPGYCP-------M- 190 (993)
Q Consensus 154 ~~y-------------------~~~~~~----~------------~~~i~~~l~~~y~~~d~ll~~p~~~~-------~- 190 (993)
..+ +|..+. + ...+.... +....++.++.-++... +
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~~~ 227 (480)
T PLN00164 149 LRLPALDEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHG-RRFMEAAGIIVNTAAELEPGVLAAIA 227 (480)
T ss_pred hhhhhhcccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHH-HhhhhcCEEEEechHHhhHHHHHHHH
Confidence 000 000000 0 00011111 11122332322111110 0
Q ss_pred -----CC--CCceeecCccccc---C--CcChHHHHHHhCCCCCCcEEEEEcCCCCCh-h----hHHHhhCCCCc--EEE
Q 001939 191 -----PA--FRDVIDVPLVVRR---L--HKSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGW--KCL 251 (993)
Q Consensus 191 -----p~--~~~v~~vp~~~~~---~--~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-~----~ll~~l~~~~~--~~v 251 (993)
+. .+.+..|||+... + ....+++.++++-.+.+.+|||||||...- . ++...+...+. .++
T Consensus 228 ~~~~~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv 307 (480)
T PLN00164 228 DGRCTPGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWV 307 (480)
T ss_pred hccccccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 00 1357778887521 1 112346778888766778999999997542 1 23333433333 333
Q ss_pred EeCCCC-----------C-CCCCC---------eEECCCCCCHH--HHHhhcC--EEEecCChhHHHHHHHcCCcEEEEe
Q 001939 252 VCGASD-----------S-QLPPN---------FIKLPKDAYTP--DFMAASD--CMLGKIGYGTVSEALAYKLPFVFVR 306 (993)
Q Consensus 252 v~G~~~-----------~-~l~~n---------v~~~~~~~~~p--dlL~~ad--l~It~~G~~Tv~Eal~~GvP~l~ip 306 (993)
+-.... . .+|+| +.+. .|+| ++|+|++ +||||||+||++|++++|||||++|
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~---~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P 384 (480)
T PLN00164 308 LRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWP---TWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWP 384 (480)
T ss_pred EcCCcccccccccccchhhhCChHHHHHhcCCCeEEe---ecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCC
Confidence 322110 0 14544 3442 5666 7999855 8999999999999999999999999
Q ss_pred CCCCCChHHHHHHHH-HcCcEEEEecC-----CCChhhHHHHHHHHHhCCCCccCCCCHHHHHHHHHHHHH
Q 001939 307 RDYFNEEPFLRNMLE-FYQGGVEMIRR-----DLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETA 371 (993)
Q Consensus 307 ~~~~~EQ~~na~~l~-~~G~g~~l~~~-----~~~~~~l~~~l~~ll~~~~~~~~~~~ga~~~a~~i~~~~ 371 (993)
.+.||+.|+++++ ..|+|+.+..+ .++.+.+..+|++++.++. + ......+-|+.|.+.+
T Consensus 385 --~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~-~--~~~~~r~~a~~~~~~~ 450 (480)
T PLN00164 385 --LYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGE-E--EGRKAREKAAEMKAAC 450 (480)
T ss_pred --ccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCc-h--hHHHHHHHHHHHHHHH
Confidence 7899999998875 68999998532 2578999999999997651 1 1234555566666554
No 65
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.74 E-value=7e-16 Score=175.74 Aligned_cols=302 Identities=15% Similarity=0.106 Sum_probs=169.2
Q ss_pred EEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHHH
Q 001939 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYS 96 (993)
Q Consensus 17 ~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 96 (993)
+|++.+.|. .||+.++..|+++|.++||+|++++..... .........+.+...... ++. .......+..+.
T Consensus 2 ~i~~~~g~~-~g~~~~~~~La~~L~~~g~eV~vv~~~~~~-~~~~~~~~g~~~~~i~~~-~~~-----~~~~~~~l~~~~ 73 (348)
T TIGR01133 2 KVVLAAGGT-GGHIFPALAVAEELIKRGVEVLWLGTKRGL-EKRLVPKAGIEFYFIPVG-GLR-----RKGSFRLIKTPL 73 (348)
T ss_pred eEEEEeCcc-HHHHhHHHHHHHHHHhCCCEEEEEeCCCcc-hhcccccCCCceEEEecc-CcC-----CCChHHHHHHHH
Confidence 565555555 499999999999999999999999764311 111111011222221000 000 011111111111
Q ss_pred HHhhccHHHhHHHHHHHHhcCCCcEEEECCC---chHHHHHHHcCCcEEEEecCchhHHHHHHHhhcccchHHHHHHHHh
Q 001939 97 ETAVAPRKSILKDEVEWLNSIKADLVVSDVV---PVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAE 173 (993)
Q Consensus 97 ~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~---~~a~laA~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~~l~~ 173 (993)
.. ...+....+++++++||+|+++.. ..+.++++..++|++.+....+. ... -+++
T Consensus 74 ~~-----~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~----~~~----------~~~~-- 132 (348)
T TIGR01133 74 KL-----LKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAVP----GLT----------NKLL-- 132 (348)
T ss_pred HH-----HHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCCc----cHH----------HHHH--
Confidence 11 123445577899999999998753 23455677889999754221110 000 0111
Q ss_pred hccccceeeecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCCh--hhHH-H---hhCCCC
Q 001939 174 DYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLK-E---EYLPSG 247 (993)
Q Consensus 174 ~y~~~d~ll~~p~~~~~p~~~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~~ll-~---~l~~~~ 247 (993)
+..++.++.............+.+.|+........ ..++.++++++.++|++..|+.+.. .+++ . .+...+
T Consensus 133 -~~~~d~ii~~~~~~~~~~~~~~i~n~v~~~~~~~~--~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~ 209 (348)
T TIGR01133 133 -SRFAKKVLISFPGAKDHFEAVLVGNPVRQEIRSLP--VPRERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEKG 209 (348)
T ss_pred -HHHhCeeEECchhHhhcCCceEEcCCcCHHHhccc--chhhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhcC
Confidence 11223333221110000011344455432211111 1123456666666666655555432 1222 2 222234
Q ss_pred cEE-EEeCCCCCC--------CC-CCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCC-CChHHH
Q 001939 248 WKC-LVCGASDSQ--------LP-PNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYF-NEEPFL 316 (993)
Q Consensus 248 ~~~-vv~G~~~~~--------l~-~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~-~EQ~~n 316 (993)
+.+ +++|....+ ++ .++..+.+. +++++|+.||++|+++|.+|+.||+++|+|+|+++.+.. .+|..|
T Consensus 210 ~~~~~~~g~~~~~~l~~~~~~~~l~~~v~~~~~-~~~~~l~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~ 288 (348)
T TIGR01133 210 IQIVHQTGKNDLEKVKNVYQELGIEAIVTFIDE-NMAAAYAAADLVISRAGASTVAELAAAGVPAILIPYPYAADDQYYN 288 (348)
T ss_pred cEEEEECCcchHHHHHHHHhhCCceEEecCccc-CHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhH
Confidence 544 455654321 11 122222222 788999999999999998899999999999999986542 467789
Q ss_pred HHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCC
Q 001939 317 RNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (993)
Q Consensus 317 a~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (993)
++.+++.+.|..+...+.+++.+.++|+++++++.
T Consensus 289 ~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~ 323 (348)
T TIGR01133 289 AKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPA 323 (348)
T ss_pred HHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHH
Confidence 99999999999998888778999999999998763
No 66
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.74 E-value=6.5e-16 Score=179.89 Aligned_cols=325 Identities=15% Similarity=0.149 Sum_probs=177.8
Q ss_pred CcEEEEEecCCCCcccHHHHHHHHHHHHH-CCCeEEEEeCCCCcc---cccccCCCceEEeeeeccCCccccC-ccccCh
Q 001939 14 KHLVFAYYVTGHGFGHATRVVEVVRNLIS-AGHDVHVVTGAPDFV---FTSEIQSPRLFIRKVLLDCGAVQAD-ALTVDR 88 (993)
Q Consensus 14 ~~~~Il~~v~g~G~GH~~ralaLA~aL~~-~Gh~V~~v~~~~~~~---~~~~i~~~~~~~~~~~~~~g~~~~~-~~~~~~ 88 (993)
...+|+ +++.++.||++|++.||+.|.. +|..|+|++...... .......+.+.+... ..|+.... ....+.
T Consensus 2 ~~~hvv-~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i--~dglp~g~~~~~~~~ 78 (455)
T PLN02152 2 APPHFL-LVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTF--SDGFDDGVISNTDDV 78 (455)
T ss_pred CCcEEE-EecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEc--CCCCCCccccccccH
Confidence 333453 3578899999999999999995 699999997763211 110001112333332 12332100 001111
Q ss_pred HHHHHHHHHHhhccHHHhHHHHHHHHh-cCCC-cEEEECC-CchHHHHHHHcCCcEEEEecCc-hh-HHHHHH-------
Q 001939 89 LASLEKYSETAVAPRKSILKDEVEWLN-SIKA-DLVVSDV-VPVACRAAADAGIRSVCVTNFS-WD-FIYAEY------- 156 (993)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~L~-~~kP-DlVVsD~-~~~a~laA~~~gIP~V~i~~~~-~~-~~~~~y------- 156 (993)
...+..... .....+.+.++-+. ..+| ++||+|. .+|+.-+|+.+|||.+.+...+ .. ..+..+
T Consensus 79 ~~~~~~~~~----~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~ 154 (455)
T PLN02152 79 QNRLVNFER----NGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGNNSV 154 (455)
T ss_pred HHHHHHHHH----hccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccCCCe
Confidence 111111111 11112222222221 2244 9999998 8899999999999998873322 11 011111
Q ss_pred --Hhhccc----c----------hHHHHH---HHHhhccc--cceeeecCCCCCC----CCC--CceeecCcccccC---
Q 001939 157 --VMAAGH----H----------HRSIVW---QIAEDYSH--CEFLIRLPGYCPM----PAF--RDVIDVPLVVRRL--- 206 (993)
Q Consensus 157 --~~~~~~----~----------~~~i~~---~l~~~y~~--~d~ll~~p~~~~~----p~~--~~v~~vp~~~~~~--- 206 (993)
+|..+. . ...... +..+.... ++.++.-++...- ..+ ..+..|||.....
T Consensus 155 ~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~v~~VGPL~~~~~~~ 234 (455)
T PLN02152 155 FEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNIEMVAVGPLLPAEIFT 234 (455)
T ss_pred eecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcCCEEEEcccCcccccc
Confidence 111000 0 000001 11111111 1223322221100 001 1466677764210
Q ss_pred -C---------cChHHHHHHhCCCCCCcEEEEEcCCCCC-hh----hHHHhhC--CCCcEEEEeCCC--------C----
Q 001939 207 -H---------KSRKEVRKELGIEDDVKLLILNFGGQPA-GW----KLKEEYL--PSGWKCLVCGAS--------D---- 257 (993)
Q Consensus 207 -~---------~~~~~~r~~l~~~~~~~~Vlvs~G~~~~-~~----~ll~~l~--~~~~~~vv~G~~--------~---- 257 (993)
. ....++.++++..+.+.+|||||||... .. ++...+. +..+.+++-... .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~ 314 (455)
T PLN02152 235 GSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETE 314 (455)
T ss_pred ccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccc
Confidence 0 0123577888876667899999999764 22 2333332 333344443210 0
Q ss_pred ----CC----CCCCeEECCCCCCHH--HHHhhcC--EEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cC
Q 001939 258 ----SQ----LPPNFIKLPKDAYTP--DFMAASD--CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQ 324 (993)
Q Consensus 258 ----~~----l~~nv~~~~~~~~~p--dlL~~ad--l~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~-~G 324 (993)
+. .++|..+. +|+| ++|+|.+ +||||||+||++|++++|||||++| .+.||+.||+++++ .|
T Consensus 315 ~~~~~~f~e~~~~~g~v~---~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P--~~~DQ~~na~~~~~~~~ 389 (455)
T PLN02152 315 IEKIAGFRHELEEVGMIV---SWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFP--MWSDQPANAKLLEEIWK 389 (455)
T ss_pred cccchhHHHhccCCeEEE---eeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEecc--ccccchHHHHHHHHHhC
Confidence 01 34555664 5666 8999854 8999999999999999999999999 78999999999987 35
Q ss_pred cEEEEe--cC-CCChhhHHHHHHHHHhCC
Q 001939 325 GGVEMI--RR-DLLTGHWKPYLERAISLK 350 (993)
Q Consensus 325 ~g~~l~--~~-~~~~~~l~~~l~~ll~~~ 350 (993)
+|+.+. .. .++.+++.++|++++.++
T Consensus 390 ~G~~~~~~~~~~~~~e~l~~av~~vm~~~ 418 (455)
T PLN02152 390 TGVRVRENSEGLVERGEIRRCLEAVMEEK 418 (455)
T ss_pred ceEEeecCcCCcCcHHHHHHHHHHHHhhh
Confidence 555553 33 357899999999999644
No 67
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.73 E-value=2.1e-16 Score=174.22 Aligned_cols=249 Identities=17% Similarity=0.194 Sum_probs=141.4
Q ss_pred CCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHHHHHhhcc
Q 001939 23 TGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAP 102 (993)
Q Consensus 23 ~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (993)
...|+||++||++||++|+++||+|+|++..........+...++.+... . +. .+
T Consensus 10 ~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~-------~-~~--~~--------------- 64 (279)
T TIGR03590 10 SEIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYEL-------P-DE--SS--------------- 64 (279)
T ss_pred ccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEe-------c-CC--Cc---------------
Confidence 45689999999999999999999999998764322222221111111110 0 00 00
Q ss_pred HHHhHHHHHHHHhcCCCcEEEECCCchHHHH---HHHcCCcEEEEecCchhHHHHHHHhhcccchHHHHHHHHhhccccc
Q 001939 103 RKSILKDEVEWLNSIKADLVVSDVVPVACRA---AADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCE 179 (993)
Q Consensus 103 ~~~~l~~~~~~L~~~kPDlVVsD~~~~a~la---A~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~~l~~~y~~~d 179 (993)
+..-..+..+++++.+||+||.|++-....+ .+..+.++++++|+.-...+..++-..... .+. ..|..
T Consensus 65 ~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~~~~D~vin~~~~----~~~--~~y~~-- 136 (279)
T TIGR03590 65 RYDDALELINLLEEEKFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADRPHDCDLLLDQNLG----ADA--SDYQG-- 136 (279)
T ss_pred hhhhHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCCCcCCCEEEeCCCC----cCH--hHhcc--
Confidence 0001223466788899999999985332221 223467788888865211011110000000 000 01110
Q ss_pred eeeecCCCCCCCCCCceeecCcccccCCcChHHHHHH---hCCCCCCcEEEEEcCCCCCh---hhHHHhhC--CCCc-EE
Q 001939 180 FLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKE---LGIEDDVKLLILNFGGQPAG---WKLKEEYL--PSGW-KC 250 (993)
Q Consensus 180 ~ll~~p~~~~~p~~~~v~~vp~~~~~~~~~~~~~r~~---l~~~~~~~~Vlvs~G~~~~~---~~ll~~l~--~~~~-~~ 250 (993)
..|. ......|+... +.+++..+. ....++.+.|++++||.+.. ..+++.+. ..++ ..
T Consensus 137 ---------~~~~-~~~~l~G~~Y~---~lr~eF~~~~~~~~~~~~~~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~ 203 (279)
T TIGR03590 137 ---------LVPA-NCRLLLGPSYA---LLREEFYQLATANKRRKPLRRVLVSFGGADPDNLTLKLLSALAESQINISIT 203 (279)
T ss_pred ---------cCcC-CCeEEecchHH---hhhHHHHHhhHhhhcccccCeEEEEeCCcCCcCHHHHHHHHHhccccCceEE
Confidence 0010 01111222100 112222111 00011346789999987763 24555442 2344 34
Q ss_pred EEeCCCCCC---------CCCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHH
Q 001939 251 LVCGASDSQ---------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNML 320 (993)
Q Consensus 251 vv~G~~~~~---------l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l 320 (993)
+++|++.+. ..+|+++.+|.++|+++|+.||++||++| +|++|++++|+|+|++|.. .+|..||+.+
T Consensus 204 vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl~Is~~G-~T~~E~~a~g~P~i~i~~~--~nQ~~~a~~~ 279 (279)
T TIGR03590 204 LVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADLAIGAAG-STSWERCCLGLPSLAICLA--ENQQSNSQQL 279 (279)
T ss_pred EEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCEEEECCc-hHHHHHHHcCCCEEEEEec--ccHHHHhhhC
Confidence 578987543 25689999999999999999999999999 9999999999999999954 5788898753
No 68
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.71 E-value=4.8e-16 Score=172.01 Aligned_cols=266 Identities=15% Similarity=0.134 Sum_probs=170.8
Q ss_pred EEEEcCcccccc----ccccc-ccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccC
Q 001939 498 FVARAPGRLDVM----GGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELS 572 (993)
Q Consensus 498 ~~~~APGRv~L~----GeH~d-y~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~ 572 (993)
+.++||+||||+ |-=-| ||.-.++.++|+++-.|.+++.++ +.+..
T Consensus 4 ~~~~a~aKiNL~L~i~~~r~dgyH~l~si~~~i~l~d~v~v~~~~~-----------------------~~i~~------ 54 (287)
T PRK14616 4 ISVKAFAKINLGLLITGKRPDGYHTLETIFAPINWYDTLTFSPSDT-----------------------ISMSC------ 54 (287)
T ss_pred eEEeeceeEEeeeecCCCCCCCccceeEEEEEcCCCCEEEEEECCC-----------------------EEEEe------
Confidence 346899999986 43334 777788888999888888876421 11110
Q ss_pred CCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHH
Q 001939 573 NRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASV 652 (993)
Q Consensus 573 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~ 652 (993)
...++ | ....|.+..++..+.+..+.. .|++|.|.++||+++|||||||.
T Consensus 55 --------~~~~~-----p---------------~~~~nl~~~a~~~~~~~~~~~--~~~~I~i~k~IP~~~GLGssSA~ 104 (287)
T PRK14616 55 --------TNLDL-----P---------------VDDSNLCIRAAKALQEYAGVS--KGVSITLDKRVPFGAGLGGGSSD 104 (287)
T ss_pred --------CCCCC-----C---------------CCccHHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCcCCchHHHHH
Confidence 00000 0 112577777777777777753 69999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhh-ccccceEEEEeecCccceeeecCCCCeEEEEEe
Q 001939 653 EVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASA-CGEANKLLAMVCQPAELLGVVEIPSHIRFWGID 731 (993)
Q Consensus 653 ~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~-~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~d 731 (993)
++|++.+++.++|.++++++++++|.++|.+ +| +.+ +||. .+. ....+....++.+..+.+++++
T Consensus 105 aaA~l~al~~l~g~~ls~~el~~~a~~ig~D---vp-------~~l~~gg~---~~~-~g~g~~~~~~~~~~~~~~vvv~ 170 (287)
T PRK14616 105 AATVLRVLNELWEINAPSADLHRLAVKLGAD---VP-------YFLEMKGL---AYA-TGIGDELEDLQLTLPFHIVTVF 170 (287)
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC---cc-------eEeccCCc---EEE-EEcCceeEECCcCCCcEEEEEC
Confidence 9999999999999999999999999998753 22 122 3553 121 1111212334444457788888
Q ss_pred CCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhh
Q 001939 732 SGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAK 811 (993)
Q Consensus 732 Sgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~ 811 (993)
+++.-+|.. + + +
T Consensus 171 P~~~vsT~~--------------------a------------------------------------~------------~ 182 (287)
T PRK14616 171 PEEHISTVW--------------------A------------------------------------Y------------K 182 (287)
T ss_pred CCCCcCHHH--------------------H------------------------------------H------------H
Confidence 776555421 0 0 0
Q ss_pred cCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhhhhc
Q 001939 812 NIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSAC 891 (993)
Q Consensus 812 ~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~slr~~ 891 (993)
.+|..+ .+ ...++.....++... ++++.++.++|+- +.+|.-
T Consensus 183 ~l~~~~-------------------------------~~---~~~~~~~l~~~l~~~---~~~~l~~~~~nD~-e~~~~~ 224 (287)
T PRK14616 183 NFYRRF-------------------------------ER---ERPDLKTLVRRLCLD---GDTSVLPAFENDF-ESAVFD 224 (287)
T ss_pred Hhhhhc-------------------------------cc---CCchHHHHHHHHhcC---CHHHHHHHhcCcc-HHHHHH
Confidence 111100 00 011222333333332 2566677666654 555542
Q ss_pred CCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHH
Q 001939 892 GLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYK 957 (993)
Q Consensus 892 ~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~ 957 (993)
..|+++++.+.+++ .|++|+.|||+| .|++++.++...++++.+.+++.|.
T Consensus 225 --l~p~l~~v~~~~~~-----------~Galg~~lSGSG--ptv~al~~~~~~a~~i~~~l~~~~~ 275 (287)
T PRK14616 225 --HYPAVRKVKDDLLE-----------AGSFFASLSGSG--SAVFGLFENEADAEAAAEMMRARYR 275 (287)
T ss_pred --hChHHHHHHHHHHh-----------CCCCeEEEeccc--ccceEEeCCHHHHHHHHHHhHHhCc
Confidence 47999999998887 689999999999 7999887654434466666666664
No 69
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.71 E-value=6.2e-16 Score=169.99 Aligned_cols=167 Identities=15% Similarity=0.177 Sum_probs=122.8
Q ss_pred EEEcCcccccc----ccccc-ccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCC
Q 001939 499 VARAPGRLDVM----GGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 573 (993)
Q Consensus 499 ~~~APGRv~L~----GeH~d-y~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 573 (993)
.++||+||||+ |-..| ||.-..+-.+|+++-++.+.+.++ +.+..
T Consensus 3 ~~~a~aKiNL~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~~~-----------------------~~i~~------- 52 (275)
T PRK14611 3 VLLSPAKVNLGLWILGKRPDGYHEIFTIYHTIDLYDRIYIKEHHT-----------------------LEVKT------- 52 (275)
T ss_pred eeeecceEEeeeccCcCCCCCcchhhheeEeccCCcEEEEEECCc-----------------------EEEEe-------
Confidence 46899999986 66666 888888888999998888876431 11110
Q ss_pred CCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHH
Q 001939 574 RGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVE 653 (993)
Q Consensus 574 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~ 653 (993)
+... .+ .|.|++..++..+.+..|.. .|++|.+.++||+++|||||||.+
T Consensus 53 -------~~~~-------------------~~--~~~n~v~~a~~~~~~~~g~~--~~~~i~i~k~IP~~~GLGSSsA~a 102 (275)
T PRK14611 53 -------SSPQ-------------------IK--EEENIVYKALRLFERYTGID--INYSIFIEKNIPVGAGLGGGSSNA 102 (275)
T ss_pred -------CCCC-------------------CC--CcccHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCcCCccHHHHHH
Confidence 0000 01 15788988888766666654 589999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCC
Q 001939 654 VASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSG 733 (993)
Q Consensus 654 Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSg 733 (993)
||++.+++.++|.++++++|.++|.++|. |...+++||. ++..... +....++.+.+..+++++++
T Consensus 103 aA~l~al~~~~~~~l~~~~l~~la~~i~~----------D~~~~~~Gg~---~~~~~~g-~~~~~~~~~~~~~~vv~~p~ 168 (275)
T PRK14611 103 AVVLKYLNELLGNPLSEEELFELASSISA----------DAPFFLKGGF---ALGRGIG-DKLEFLEKPISREITLVYPN 168 (275)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhCC----------CCCeeecCCe---EEEeccC-ceeEECCcCCCcEEEEEeCC
Confidence 99999999999999999999999998774 5444678884 3443332 22234444445678999998
Q ss_pred CccccC
Q 001939 734 IRHSVG 739 (993)
Q Consensus 734 v~~~~~ 739 (993)
+..+|.
T Consensus 169 ~~~sT~ 174 (275)
T PRK14611 169 IKSSTG 174 (275)
T ss_pred CCCChH
Confidence 877764
No 70
>PLN02534 UDP-glycosyltransferase
Probab=99.71 E-value=6.7e-15 Score=172.84 Aligned_cols=318 Identities=12% Similarity=0.104 Sum_probs=175.9
Q ss_pred cCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc-ccccccC-----CCceEEeeeecc---CCcccc-Ccc-ccChHH
Q 001939 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF-VFTSEIQ-----SPRLFIRKVLLD---CGAVQA-DAL-TVDRLA 90 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~-~~~~~i~-----~~~~~~~~~~~~---~g~~~~-~~~-~~~~~~ 90 (993)
++.++.||+++++.||+.|..+|+.|||++..... ....... ...+.+...... .|+... ... ..+...
T Consensus 14 vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~~~~~~~ 93 (491)
T PLN02534 14 IPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLDTLPSRD 93 (491)
T ss_pred ECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccccCCcHH
Confidence 57889999999999999999999999999775321 0111110 001333322111 132210 000 001111
Q ss_pred HHHHHHHHhhccHHHhHHHHHHHHhc--CCCcEEEECC-CchHHHHHHHcCCcEEEEecCc-h-hHH----HHH--H---
Q 001939 91 SLEKYSETAVAPRKSILKDEVEWLNS--IKADLVVSDV-VPVACRAAADAGIRSVCVTNFS-W-DFI----YAE--Y--- 156 (993)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~L~~--~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~-~-~~~----~~~--y--- 156 (993)
....+.. ..........++|++ .+|++||+|. .+|+.-+|+.+|||.+.+...+ + ... +.. +
T Consensus 94 ~~~~~~~----~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~ 169 (491)
T PLN02534 94 LLRKFYD----AVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAHLSV 169 (491)
T ss_pred HHHHHHH----HHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcccccC
Confidence 1222211 111122333455654 3679999998 7799999999999998873221 1 000 000 0
Q ss_pred --------Hhhccc----c-------------hHHHHHHHHhhccccceeeecCCCCC-------C-CCC-CceeecCcc
Q 001939 157 --------VMAAGH----H-------------HRSIVWQIAEDYSHCEFLIRLPGYCP-------M-PAF-RDVIDVPLV 202 (993)
Q Consensus 157 --------~~~~~~----~-------------~~~i~~~l~~~y~~~d~ll~~p~~~~-------~-p~~-~~v~~vp~~ 202 (993)
++..+. . .+.+...+......++.++.-++... + ..+ +++..|||.
T Consensus 170 ~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~VGPL 249 (491)
T PLN02534 170 SSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVWCVGPV 249 (491)
T ss_pred CCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEEEECcc
Confidence 000000 0 00011111111111122222111110 0 011 346677776
Q ss_pred cccC-----------C--cChHHHHHHhCCCCCCcEEEEEcCCCCCh--h---hHHHhhC--CCCcEEEEeCCC------
Q 001939 203 VRRL-----------H--KSRKEVRKELGIEDDVKLLILNFGGQPAG--W---KLKEEYL--PSGWKCLVCGAS------ 256 (993)
Q Consensus 203 ~~~~-----------~--~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~---~ll~~l~--~~~~~~vv~G~~------ 256 (993)
.... . ....+..++|+-.+.+.+|||+|||...- . ++...+. +..+.+++-...
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~ 329 (491)
T PLN02534 250 SLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELE 329 (491)
T ss_pred cccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchh
Confidence 4210 0 01234667888766789999999998642 2 2333333 233333332111
Q ss_pred ---CCC------CCCCeEECCCCCCHH--HHHhhcCE--EEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHH-H
Q 001939 257 ---DSQ------LPPNFIKLPKDAYTP--DFMAASDC--MLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLE-F 322 (993)
Q Consensus 257 ---~~~------l~~nv~~~~~~~~~p--dlL~~adl--~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~-~ 322 (993)
.+. .+.|+.+. .|+| ++|+|.++ ||||||+||++||+++|||||++| .+.||+.|+++++ .
T Consensus 330 ~~~~p~gf~~~~~~~g~~v~---~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P--~~~dq~~na~~~~e~ 404 (491)
T PLN02534 330 EWLVKENFEERIKGRGLLIK---GWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWP--LFAEQFLNEKLIVEV 404 (491)
T ss_pred hhcCchhhHHhhccCCeecc---CCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEecc--ccccHHHHHHHHHHh
Confidence 001 13455553 4666 79998665 999999999999999999999999 7899999999886 7
Q ss_pred cCcEEEEec---------C----CCChhhHHHHHHHHHh
Q 001939 323 YQGGVEMIR---------R----DLLTGHWKPYLERAIS 348 (993)
Q Consensus 323 ~G~g~~l~~---------~----~~~~~~l~~~l~~ll~ 348 (993)
.|+|+.+.. + -++.+++..+|++++.
T Consensus 405 ~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 405 LRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred hcceEEecccccccccccccccCccCHHHHHHHHHHHhc
Confidence 788887631 1 2678899999999985
No 71
>PLN03015 UDP-glucosyl transferase
Probab=99.70 E-value=6.1e-15 Score=171.56 Aligned_cols=149 Identities=15% Similarity=0.213 Sum_probs=106.5
Q ss_pred ceeecCccccc--CCcChHHHHHHhCCCCCCcEEEEEcCCCCCh-h----hHHHhhC--CCCcEEEEeCC----------
Q 001939 195 DVIDVPLVVRR--LHKSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYL--PSGWKCLVCGA---------- 255 (993)
Q Consensus 195 ~v~~vp~~~~~--~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-~----~ll~~l~--~~~~~~vv~G~---------- 255 (993)
.+..|||.... .....+++.++|+-.+.+.+|||+|||...- . ++...+. +..+.+++-..
T Consensus 237 ~v~~VGPl~~~~~~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~ 316 (470)
T PLN03015 237 PVYPIGPIVRTNVHVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSD 316 (470)
T ss_pred ceEEecCCCCCcccccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCcccccccccc
Confidence 46678876531 1112346778888766788999999998652 2 2333333 23334443110
Q ss_pred -C-CC-CCCCC---------eEECCCCCCHH--HHHhh--cCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHH
Q 001939 256 -S-DS-QLPPN---------FIKLPKDAYTP--DFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNM 319 (993)
Q Consensus 256 -~-~~-~l~~n---------v~~~~~~~~~p--dlL~~--adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~ 319 (993)
. .. .+|+| +.+. .|+| ++|+| +.+||||+|+||++|++++|||||++| .+.||+.||++
T Consensus 317 ~~~~~~~lp~~f~er~~~rGl~v~---~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P--~~~DQ~~na~~ 391 (470)
T PLN03015 317 DDQVSASLPEGFLDRTRGVGLVVT---QWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWP--LYAEQWMNATL 391 (470)
T ss_pred ccchhhcCChHHHHhhccCceEEE---ecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecc--cccchHHHHHH
Confidence 0 11 25666 3443 5666 78988 778999999999999999999999999 78999999999
Q ss_pred H-HHcCcEEEEe----cCCCChhhHHHHHHHHHh
Q 001939 320 L-EFYQGGVEMI----RRDLLTGHWKPYLERAIS 348 (993)
Q Consensus 320 l-~~~G~g~~l~----~~~~~~~~l~~~l~~ll~ 348 (993)
+ +..|+|+.+. ...++.+.+..+|++++.
T Consensus 392 ~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~ 425 (470)
T PLN03015 392 LTEEIGVAVRTSELPSEKVIGREEVASLVRKIVA 425 (470)
T ss_pred HHHHhCeeEEecccccCCccCHHHHHHHHHHHHc
Confidence 8 6889999985 234788999999999995
No 72
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.70 E-value=2.5e-15 Score=180.03 Aligned_cols=182 Identities=17% Similarity=0.206 Sum_probs=132.6
Q ss_pred CCceeecCccccc-CC--c-ChHHHHHHhCCCCCCcEEEEEcCCCCC----hh----hHHHhhCC-CCcEEEE-e-CCCC
Q 001939 193 FRDVIDVPLVVRR-LH--K-SRKEVRKELGIEDDVKLLILNFGGQPA----GW----KLKEEYLP-SGWKCLV-C-GASD 257 (993)
Q Consensus 193 ~~~v~~vp~~~~~-~~--~-~~~~~r~~l~~~~~~~~Vlvs~G~~~~----~~----~ll~~l~~-~~~~~vv-~-G~~~ 257 (993)
.+++..+|++... .. . .+.+|.+.+... ..++||||+|++.. +. .+...+.. ++..+++ . +...
T Consensus 244 ~~~v~~IG~l~~~~~~~~~~~~~~wl~~~~~~-~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~ 322 (496)
T KOG1192|consen 244 LPKVIPIGPLHVKDSKQKSPLPLEWLDILDES-RHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDS 322 (496)
T ss_pred CCCceEECcEEecCccccccccHHHHHHHhhc-cCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcc
Confidence 4567788876553 11 1 456777766532 45899999999873 22 23333333 3554332 2 2211
Q ss_pred ----CCC----CCCeEECCCCCCHH--HHH-hh--cCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcC
Q 001939 258 ----SQL----PPNFIKLPKDAYTP--DFM-AA--SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQ 324 (993)
Q Consensus 258 ----~~l----~~nv~~~~~~~~~p--dlL-~~--adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G 324 (993)
..+ +.||... +|+| ++| +| .++||||||+|+++|++++|||||++| .|.||+.||+++++.|
T Consensus 323 ~~~~~~~~~~~~~nV~~~---~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~P--lf~DQ~~Na~~i~~~g 397 (496)
T KOG1192|consen 323 IYFPEGLPNRGRGNVVLS---KWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVP--LFGDQPLNARLLVRHG 397 (496)
T ss_pred hhhhhcCCCCCcCceEEe---cCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCC--ccccchhHHHHHHhCC
Confidence 123 3478774 5666 554 43 889999999999999999999999999 8999999999999999
Q ss_pred cEEEEecCCCChhhHHHHHHHHHhCCCC----------ccCCCCHHHHHHHHHHHHHccCccccCCCCcchhhh
Q 001939 325 GGVEMIRRDLLTGHWKPYLERAISLKPC----------YEGGINGGEVAAHILQETAIGKNYASDKLSGARRLR 388 (993)
Q Consensus 325 ~g~~l~~~~~~~~~l~~~l~~ll~~~~~----------~~~~~~ga~~~a~~i~~~~~~~~~~~~~~~Ga~~Lr 388 (993)
.+.++...+++...+..++.+++.+++. +++++..+ +.+.+|.++ +.+++++.+|+
T Consensus 398 ~~~v~~~~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~~p~~~-~~~~~~~e~-------~~~~~~~~~l~ 463 (496)
T KOG1192|consen 398 GGGVLDKRDLVSEELLEAIKEILENEEYKEAAKRLSEILRDQPISP-ELAVKWVEF-------VARHGGAKHLK 463 (496)
T ss_pred CEEEEehhhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCH-HHHHHHHHH-------HHhcCCCcccC
Confidence 9999999888777788999999877732 12678888 888888888 67888999997
No 73
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.70 E-value=4.8e-16 Score=171.19 Aligned_cols=114 Identities=14% Similarity=0.118 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCC
Q 001939 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (993)
Q Consensus 610 ~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~ 689 (993)
.|.+..++..+++..+.. .|+++.|.++||.++|||||||.++|++.+++.+++.+++++++.++|..+|
T Consensus 66 ~nl~~~a~~~~~~~~~~~--~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~G-------- 135 (280)
T PRK14614 66 GNIAWRAADALLDLSGRE--VGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKLG-------- 135 (280)
T ss_pred CcHHHHHHHHHHHHhCCC--CceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC--------
Confidence 466767777777777754 5899999999999999999999999999999999999999999999997643
Q ss_pred CcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCCCccccC
Q 001939 690 GVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (993)
Q Consensus 690 G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv~~~~~ 739 (993)
.|...+++||. .+...+. +....++.++++.++++++++.-+|.
T Consensus 136 --~Dv~~~l~gg~---~~~~g~g-e~~~~l~~~~~~~ivl~~p~~~~sT~ 179 (280)
T PRK14614 136 --ADVPFFIFKKT---ALAEGIG-DKLTAVEGVPPLWVVLVNPGLHVSTA 179 (280)
T ss_pred --CCcceeeeCCc---EEEEEcC-ceeEECCCCCCcEEEEECCCCCCCHH
Confidence 27667788884 2232222 22245554567789999998877764
No 74
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.67 E-value=4.7e-15 Score=163.93 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=92.1
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCC
Q 001939 608 KWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGA 687 (993)
Q Consensus 608 ~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~ 687 (993)
.+.|+++.++..+.++.|... .|++|.|.++||+|+|||||||.+||++.+++++++.+++++++.++|..+|
T Consensus 68 ~~~Nlv~ka~~~~~~~~g~~~-~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig------ 140 (290)
T PRK14608 68 GDDNLVLRAARALRARVGPGL-PPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLG------ 140 (290)
T ss_pred CCCcHHHHHHHHHHHHhCCCC-CceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC------
Confidence 357999888887777666333 6899999999999999999999999999999999999999999999999864
Q ss_pred CCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCCCccccC
Q 001939 688 PCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (993)
Q Consensus 688 ~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv~~~~~ 739 (993)
.|..++++||. .+..... +...+++.++++.+++++++...+|.
T Consensus 141 ----~dv~~~l~gg~---~~~~g~g-~~~~~l~~~~~~~~vv~~p~~~~sT~ 184 (290)
T PRK14608 141 ----ADVPVCLDSRP---LIMRGIG-EELTPLPGLPSLPAVLVNPGVPVATP 184 (290)
T ss_pred ----CCcchhhcCCe---EEEEecC-CEeEECCCCCCcEEEEECCCCCcChH
Confidence 27778899984 3332222 22245543457889999988877763
No 75
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.66 E-value=3.2e-15 Score=172.53 Aligned_cols=292 Identities=17% Similarity=0.116 Sum_probs=171.3
Q ss_pred cCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHHHHHhhc
Q 001939 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVA 101 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 101 (993)
+.|.-.||+.++ +|+++|+++++++.|++.....+....++. .+.+.. ....++ ...+..+..
T Consensus 11 ~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~~m~~~g~~~-~~~~~~-------l~v~G~----~~~l~~~~~---- 73 (385)
T TIGR00215 11 VAGEASGDILGA-GLRQQLKEHYPNARFIGVAGPRMAAEGCEV-LYSMEE-------LSVMGL----REVLGRLGR---- 73 (385)
T ss_pred EeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccHHHHhCcCcc-ccChHH-------hhhccH----HHHHHHHHH----
Confidence 455557999999 999999999999998865432222211110 000100 000011 011222222
Q ss_pred cHHHhHHHHHHHHhcCCCcEEEE-CC-Cch--HHHHHHHcCCcEEEEec---CchhHHHHHHHhhcccchHHHHHHHHhh
Q 001939 102 PRKSILKDEVEWLNSIKADLVVS-DV-VPV--ACRAAADAGIRSVCVTN---FSWDFIYAEYVMAAGHHHRSIVWQIAED 174 (993)
Q Consensus 102 ~~~~~l~~~~~~L~~~kPDlVVs-D~-~~~--a~laA~~~gIP~V~i~~---~~~~~~~~~y~~~~~~~~~~i~~~l~~~ 174 (993)
....+.+..+++++++||+||+ |+ .+. ...+|+.+|||++.+.. ..|...-...+ ...++.+.-
T Consensus 74 -~~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~waw~~~~~r~l-------~~~~d~v~~- 144 (385)
T TIGR00215 74 -LLKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWAWRKWRAKKI-------EKATDFLLA- 144 (385)
T ss_pred -HHHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhhcCcchHHHH-------HHHHhHhhc-
Confidence 2234556788999999999995 54 222 23377889999998622 22321000000 000111110
Q ss_pred ccccceeeecCCCCC-CC---CCCceeecCcccccCC--cChHHHHHHhCCCCCCcEEEEEcCCCCCh-hh----HHH--
Q 001939 175 YSHCEFLIRLPGYCP-MP---AFRDVIDVPLVVRRLH--KSRKEVRKELGIEDDVKLLILNFGGQPAG-WK----LKE-- 241 (993)
Q Consensus 175 y~~~d~ll~~p~~~~-~p---~~~~v~~vp~~~~~~~--~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-~~----ll~-- 241 (993)
.+|+... .+ ....+++.|+....+. ..+.+.++.+++++++++|++..||.+.. .. +++
T Consensus 145 --------~~~~e~~~~~~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~ 216 (385)
T TIGR00215 145 --------ILPFEKAFYQKKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAA 216 (385)
T ss_pred --------cCCCcHHHHHhcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHH
Confidence 1111100 00 0112345554333221 34566788889888888888888888764 11 222
Q ss_pred -hhC--CCCcEEEEe-CCCC--CC-------C--CCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEE-
Q 001939 242 -EYL--PSGWKCLVC-GASD--SQ-------L--PPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFV- 305 (993)
Q Consensus 242 -~l~--~~~~~~vv~-G~~~--~~-------l--~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~i- 305 (993)
.+. .+++.+++. +... .. . ...+..+ ..+++++|++||++|+.+|..|+ |++++|+|+|++
T Consensus 217 ~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~l~aADl~V~~SGt~tl-Ea~a~G~P~Vv~y 293 (385)
T TIGR00215 217 QLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLI--DGDARKAMFAADAALLASGTAAL-EAALIKTPMVVGY 293 (385)
T ss_pred HHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEE--CchHHHHHHhCCEEeecCCHHHH-HHHHcCCCEEEEE
Confidence 221 235555443 2221 11 1 2234433 34678999999999999998777 999999999999
Q ss_pred ---eCCCCC-------ChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 306 ---RRDYFN-------EEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 306 ---p~~~~~-------EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
|.+.+- .|..|++.+...++...+..++.+++.+.+.+.+++.++
T Consensus 294 k~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~ 348 (385)
T TIGR00215 294 RMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENG 348 (385)
T ss_pred cCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCC
Confidence 654321 256789999999999999889999999999999999877
No 76
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.66 E-value=2.3e-15 Score=165.61 Aligned_cols=164 Identities=17% Similarity=0.234 Sum_probs=114.1
Q ss_pred EEEcCcccccc----ccccc-ccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCC
Q 001939 499 VARAPGRLDVM----GGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 573 (993)
Q Consensus 499 ~~~APGRv~L~----GeH~d-y~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 573 (993)
.++||+||||+ |--.| ||.-..+-++|+++-.+.+.+.+++ +.+... .
T Consensus 4 ~~~a~aKiNl~L~i~~~~~dgyH~l~sl~~al~l~d~v~i~~~~~~----------------------~~i~~~-----~ 56 (276)
T PRK14612 4 ERLAPAKVNLGLSVLGRREDGYHELHTLMVPLDVGDRLEVEPIASG----------------------LELRVL-----G 56 (276)
T ss_pred EEeeCcEEeeccccCCCCCCCCceeEEEEEECCCCCEEEEEECCCc----------------------EEEEcC-----C
Confidence 36899999985 55556 8888899999999988888875421 111100 0
Q ss_pred CCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHH
Q 001939 574 RGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVE 653 (993)
Q Consensus 574 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~ 653 (993)
.++ + ....|.++.++..++++.|.. .|++|.|.++||+++|||||||.+
T Consensus 57 ---------~~~-------------------p-~~~~Nli~ka~~~~~~~~g~~--~~~~I~i~k~IP~~~GLGssSa~a 105 (276)
T PRK14612 57 ---------ADL-------------------P-TDERNLVYRAARAYLDAAGQP--GGVRITLEKRLPLAAGLGGGSSDA 105 (276)
T ss_pred ---------CCC-------------------C-CCCcccHHHHHHHHHHHhCCC--CCeEEEEEecCCCcCCCchHHHHH
Confidence 000 0 113567777777777777753 589999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCC
Q 001939 654 VASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSG 733 (993)
Q Consensus 654 Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSg 733 (993)
||++.+++++++.+++ +.+++..+| .|...+++||. .+...+.... .+++. +.+.+++++++
T Consensus 106 aa~l~al~~l~~~~l~---l~~ia~~~g----------~dv~~~~~GG~---~~~~g~g~~~-~~l~~-~~~~~vv~~P~ 167 (276)
T PRK14612 106 AATLLALAQLYPAPVD---LPALALTLG----------ADVPFFLLGGA---AEARGVGERL-TPLEL-PPVPLVLVNPG 167 (276)
T ss_pred HHHHHHHHHHhCCChH---HHHHHHHhC----------CCcCeeeeCCe---EEEEecCccc-eEcCC-CCcEEEEECCC
Confidence 9999999999998775 455555443 27677888984 3332222222 44543 47889999887
Q ss_pred Ccccc
Q 001939 734 IRHSV 738 (993)
Q Consensus 734 v~~~~ 738 (993)
+..+|
T Consensus 168 ~~~sT 172 (276)
T PRK14612 168 VAVSA 172 (276)
T ss_pred CCCCH
Confidence 76654
No 77
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.66 E-value=1.8e-14 Score=161.27 Aligned_cols=231 Identities=15% Similarity=0.214 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCC
Q 001939 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (993)
Q Consensus 610 ~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~ 689 (993)
.|.++.++..+++.+|. .|++|.|.++||.++|||||||.++|.+.|++.+++.++++++|++++.+.|. +
T Consensus 64 ~n~~~~~~~~~~~~~g~---~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge~------s 134 (324)
T TIGR00144 64 RSRIMEAARKTLKHIGS---EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGGT------S 134 (324)
T ss_pred HHHHHHHHHHHHHHhCC---CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCC------C
Confidence 56777777777777763 48999999999999999999999999999999999999999999999986664 3
Q ss_pred CcchhhHhhccccceEEEEe---ec--------------CccceeeecCCCCeEEEEEeCCCccccCCCCccchhhhhhc
Q 001939 690 GVMDQMASACGEANKLLAMV---CQ--------------PAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFM 752 (993)
Q Consensus 690 G~mDq~~~~~Gg~~~~~~i~---~~--------------~~~~~~~v~~p~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~ 752 (993)
| .|.+++++||. ++.. +. +.....++++| +|+|+++..... +|.+ .|.
T Consensus 135 ~-~~va~~~~GG~---vv~~G~~~~~~~~~~~~~~~~~~~~~~~~r~~~p-~~~~vlviP~~~-~t~~-----are---- 199 (324)
T TIGR00144 135 G-IGVASFEDGGF---IVDGGHSSKEKSDFLPSSASSAKPAPVIARYDFP-DWNIILAIPEID-SVSG-----RRE---- 199 (324)
T ss_pred c-cceeeeeeCCE---EEECCcccccccccCcccccCCCCCCeEEecCCC-CcEEEEEecCCC-CCCc-----HHH----
Confidence 3 25578999994 2220 11 11112345566 999999865544 3321 010
Q ss_pred chhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCC
Q 001939 753 GRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDP 832 (993)
Q Consensus 753 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~ 832 (993)
.+.| ..++.++.
T Consensus 200 --------------------------------~~~l------p~~~~i~~------------------------------ 211 (324)
T TIGR00144 200 --------------------------------VNIF------QKYCPVPL------------------------------ 211 (324)
T ss_pred --------------------------------HHHH------HhcCCCCH------------------------------
Confidence 0000 00010111
Q ss_pred ceecCCCcccccccccccccchhhHH--HHHHHHHHccCChhHHHHHHHHHHH--------hhhhhhhcCCCCchHHHHH
Q 001939 833 VTVIDPKRTYFVRAPVCHPIYENFRV--KAFKALLTAAASDDQLTSLGELLYQ--------CHYSYSACGLGSDGTDRLV 902 (993)
Q Consensus 833 ~~~~~~~~~~~~~~r~~h~v~E~~Rv--~~~~~al~~~~~~~~l~~lG~Lm~~--------sH~slr~~~vs~~~lD~lv 902 (993)
.. +.+..|+ ..+..+|..+ |++.|++.|++ -|..+|. +.+..++
T Consensus 212 ----------------~d-v~~~~~~~l~~l~~al~~~----d~~~~~~~l~d~~~~~f~~~~~~~r~-----~li~~~~ 265 (324)
T TIGR00144 212 ----------------RD-VERICHLILMKMMPAVVEG----DLDAFGESVNEIQGLGFKKIERELQD-----PLIKRII 265 (324)
T ss_pred ----------------HH-HHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhhcchhhhccccC-----HHHHHHH
Confidence 11 1233344 2347777775 99999999986 4555553 4455555
Q ss_pred HHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCcEEee--cCCCCcc
Q 001939 903 QLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG--SSPGAGK 976 (993)
Q Consensus 903 ~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~--~~~G~~~ 976 (993)
+.+++ ++|+-|||+| .||+++.+++. +++.+++.+.|. ..+....+++. ...|+.+
T Consensus 266 ~~l~~-------------a~g~~iSGsG--PTv~al~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~n~Ga~v 323 (324)
T TIGR00144 266 DSMIS-------------APGAGMSSFG--PTVYAVTDEKP--GNIAGAVADIFG-PYGVYGRIIVTKARNRGAFI 323 (324)
T ss_pred HHHHh-------------ccCceecCCC--CeEEEEecCch--HHHHHHHHHHhh-hCCCceEEEEEccCCCCCEe
Confidence 55432 4889998776 99998876543 466777777654 56777888876 3457653
No 78
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.64 E-value=6e-15 Score=161.13 Aligned_cols=116 Identities=11% Similarity=0.163 Sum_probs=89.2
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccC
Q 001939 607 QKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVG 686 (993)
Q Consensus 607 ~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G 686 (993)
..|.|+++.++..+.++.+ . .|++|.+.++||.++|||||||.++|++.+++++++.+++++++.++|.++
T Consensus 61 ~~~~Nlv~~a~~~~~~~~~--~-~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~i------ 131 (269)
T PRK14609 61 DPEDNLVVKAYNLLKKDFP--L-PPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATL------ 131 (269)
T ss_pred CccccHHHHHHHHHHHHcC--C-CCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh------
Confidence 3568999988887766555 3 589999999999999999999999999999999999999999999999976
Q ss_pred CCCCcchhhHhhccccceEEEEeecCccceeeecCC-CCeEEEEEeCCCccccC
Q 001939 687 APCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP-SHIRFWGIDSGIRHSVG 739 (993)
Q Consensus 687 ~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p-~~~~~ll~dSgv~~~~~ 739 (993)
| +|...+++|+. .+...+. +...+++.+ +++.++++++++.-+|+
T Consensus 132 ---G-aDvpffl~g~~---a~~~G~G-e~l~~l~~~~~~~~~vlv~P~~~~sT~ 177 (269)
T PRK14609 132 ---G-ADCAFFIRNKP---VYATGIG-DIFSPIDLSLSGYYIALVKPDIHVSTA 177 (269)
T ss_pred ---C-CCceEEccCCC---EEEEEeC-CeeEECCCCCCCCEEEEECCCCCCChH
Confidence 3 37666666763 2322233 222455432 56789999888776663
No 79
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.62 E-value=3.5e-14 Score=157.41 Aligned_cols=171 Identities=15% Similarity=0.196 Sum_probs=118.5
Q ss_pred eEEEEcCcccccc----ccccc-ccCCeeeccccc-cceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccc
Q 001939 497 IFVARAPGRLDVM----GGIAD-YSGSLVLQMPIR-EACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSE 570 (993)
Q Consensus 497 ~~~~~APGRv~L~----GeH~d-y~gg~vl~~AI~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~ 570 (993)
.+.+.||+||||+ |-.-| ||.-..+-.+|+ .+-.+.+++.++.. +.+...+
T Consensus 6 ~~~~~apaKINL~L~v~~kr~DGyH~l~sl~~~i~~~~D~l~i~~~~~~~---------------------i~~~~~~-- 62 (296)
T PRK14615 6 AVTLRSGCKVNLDLRITGVRPDGYHEIDSLFLPLPEPHDELHVRVTDAPG---------------------ITVTCTI-- 62 (296)
T ss_pred eEEEEecceEEeccccCCcCCCCCcceEEEEEECCCCCcEEEEEECCCCC---------------------EEEEECC--
Confidence 3567999999986 66666 888888888998 47788887665321 2221100
Q ss_pred cCCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHH
Q 001939 571 LSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSA 650 (993)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSA 650 (993)
.++ + .. .|.+..++..+.+..+.. .|++|.|.++||.++||||||
T Consensus 63 ---------~~~----------------------~-~~-~Nlv~~a~~~~~~~~~~~--~~~~i~i~k~IP~~~GLGsgs 107 (296)
T PRK14615 63 ---------PDL----------------------D-PE-RNTVTRAYTAFAAATGFR--PPLEVHLRKGIPHGAGLGGGS 107 (296)
T ss_pred ---------CCC----------------------C-CC-ccHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCCCCccHHH
Confidence 000 0 01 577777777777667754 689999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecC-CCCeEEEE
Q 001939 651 SVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEI-PSHIRFWG 729 (993)
Q Consensus 651 A~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~-p~~~~~ll 729 (993)
|.++|++.+++++++.+++.+++.++|.++|.. +|.-+. ..+++.+|.+. ..+++++ ++++.+++
T Consensus 108 a~aaa~l~al~~l~~~~l~~~~l~~~a~~~gaD---vPffl~-gg~a~~~G~Ge----------~~~~l~~~~~~~~~vl 173 (296)
T PRK14615 108 ADAAALLRHLNSIAPHPLSPEALAKLAAGVGAD---VPFFLH-NVPCRATGIGE----------ILTPVALGLSGWTLVL 173 (296)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCC---Ceeecc-CCCEEEEeeEe----------EEEECCCCCCCcEEEE
Confidence 999999999999999999999999999998863 442211 11222333221 1234443 34677899
Q ss_pred EeCCCccccC
Q 001939 730 IDSGIRHSVG 739 (993)
Q Consensus 730 ~dSgv~~~~~ 739 (993)
+++++.-+|.
T Consensus 174 ~~P~~~vsT~ 183 (296)
T PRK14615 174 VCPEVQVSTP 183 (296)
T ss_pred ECCCCCcChH
Confidence 9888776664
No 80
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.60 E-value=3e-14 Score=155.74 Aligned_cols=168 Identities=14% Similarity=0.177 Sum_probs=119.1
Q ss_pred EEEEcCccccccccccc------ccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEeccccc
Q 001939 498 FVARAPGRLDVMGGIAD------YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSEL 571 (993)
Q Consensus 498 ~~~~APGRv~L~GeH~d------y~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~ 571 (993)
+.++||+||||++ |.. ||.-..+.++|+.+-++.+++.++.. +.+.+
T Consensus 7 ~~~~apaKiNL~L-~v~~~r~dGyH~l~s~~~~i~l~D~v~i~~~~~~~---------------------~~i~~----- 59 (271)
T PRK00343 7 LDWPAPAKLNLFL-HITGRRADGYHELQTLFQFLDWGDTLHFEVRDDGE---------------------IRLLT----- 59 (271)
T ss_pred EEEeeeeeEEEEe-ecCCcCCCCCCeeeEEEEEcccceEEEEEECCCCc---------------------EEEeC-----
Confidence 4568999999999 532 44445588899999999888765432 22211
Q ss_pred CCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHH
Q 001939 572 SNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSAS 651 (993)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA 651 (993)
+..+ ...|.||+..++..+.+..+.. .|++|.|.++||+|+|||||||
T Consensus 60 ---------~~~~---------------------~~~~~N~v~~a~~~l~~~~~~~--~~~~i~i~k~IP~gaGLGssSs 107 (271)
T PRK00343 60 ---------PIPG---------------------VPEEDNLIVRAARLLQKATGTP--LGADISLDKRLPMGGGLGGGSS 107 (271)
T ss_pred ---------CCCC---------------------CCCcccHHHHHHHHHHHHhCCC--CCeEEEEEcCCCCcCCCCcchH
Confidence 0000 0246899999998877766754 5999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEe
Q 001939 652 VEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGID 731 (993)
Q Consensus 652 ~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~d 731 (993)
.++|++.+++++++.++++++++++|.++|- |. ++.++|. ..+..... +...+++.| ...+++++
T Consensus 108 ~aaa~l~al~~l~~~~ls~~el~~la~~iga----------Dv-p~~l~g~--~~~~~g~g-~~~~~l~~~-~~~~vl~~ 172 (271)
T PRK00343 108 DAATTLVALNRLWQLGLSRDELAELGLKLGA----------DV-PVFVRGH--AAFAEGIG-EILTPVDLP-EKWYLVVK 172 (271)
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC----------Cc-eEEecCC--cEEEEecC-CEEEECCCC-CcEEEEEe
Confidence 9999999999999999999999999988754 42 3334442 22333222 222455543 45578888
Q ss_pred CCCccccC
Q 001939 732 SGIRHSVG 739 (993)
Q Consensus 732 Sgv~~~~~ 739 (993)
++++.+|.
T Consensus 173 p~~~~sT~ 180 (271)
T PRK00343 173 PGVHISTA 180 (271)
T ss_pred CCCCcChH
Confidence 88777653
No 81
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=99.59 E-value=3.6e-16 Score=124.34 Aligned_cols=51 Identities=35% Similarity=0.530 Sum_probs=41.6
Q ss_pred HHHhcCCCCCCceEEEEcCcccccccccccccCCeeeccccccceEEEEEec
Q 001939 485 KAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKI 536 (993)
Q Consensus 485 ~~~~~~f~~~~~~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~ 536 (993)
..|.+.||.+++ .+++|||||||||||+||+||.||||||++++++++++|
T Consensus 2 ~~F~~~fg~~p~-~~~~APGRvnliGeHtDy~gG~Vl~~Ai~~~~~~a~~~r 52 (52)
T PF10509_consen 2 EEFEEFFGEEPE-VVASAPGRVNLIGEHTDYNGGFVLPAAIDLRTYVAVSPR 52 (52)
T ss_dssp HHHHHHHSS--S-EEEEEEEEEEEE-TT-GGGT-EEEEEEEEEEEEEEEEEE
T ss_pred hhHHHHhCCCCC-EEEECCceEEecCcccccCCCeEEEEEeeccEEEEEEcC
Confidence 356778887655 699999999999999999999999999999999999985
No 82
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=1.2e-13 Score=144.31 Aligned_cols=262 Identities=17% Similarity=0.136 Sum_probs=160.0
Q ss_pred CCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHHHHHhhccH
Q 001939 24 GHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPR 103 (993)
Q Consensus 24 g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (993)
..|+||++|++.||++|.++|..++|++..... ..++ +. ++ ++ ..+
T Consensus 12 ~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e---~~~~-------~~-~~-~f------~~~---------------- 57 (318)
T COG3980 12 EIGMGHVMRTLTLARELEKRGFACLFLTKQDIE---AIIH-------KV-YE-GF------KVL---------------- 57 (318)
T ss_pred ccCcchhhhHHHHHHHHHhcCceEEEecccchh---hhhh-------hh-hh-hc------cce----------------
Confidence 458999999999999999999999999876310 0010 00 00 00 000
Q ss_pred HHhHHHHHHHHhcCCCcEEEECCCchH----HHHHHHcCCcEEEEecCchhHHHHHHHhhcccchHHHHHHHHhhccccc
Q 001939 104 KSILKDEVEWLNSIKADLVVSDVVPVA----CRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCE 179 (993)
Q Consensus 104 ~~~l~~~~~~L~~~kPDlVVsD~~~~a----~laA~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~~l~~~y~~~d 179 (993)
..+.-..+++.++|++|.|++-+. -.....++.+.+.+++..-.... + .+.++......- +
T Consensus 58 ---~~~~~n~ik~~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~--d-------~d~ivN~~~~a~---~ 122 (318)
T COG3980 58 ---EGRGNNLIKEEKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFK--D-------NDLIVNAILNAN---D 122 (318)
T ss_pred ---eeecccccccccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchh--h-------hHhhhhhhhcch---h
Confidence 001112578999999999986543 34555689999999765421111 0 112222222110 0
Q ss_pred eeeecCCCCCCCCCCceeecCccccc----CCcChHHHHHHhCCCCCCcEEEEEcCCCCCh---hhHHHhhCCCCcEE-E
Q 001939 180 FLIRLPGYCPMPAFRDVIDVPLVVRR----LHKSRKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEEYLPSGWKC-L 251 (993)
Q Consensus 180 ~ll~~p~~~~~p~~~~v~~vp~~~~~----~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~---~~ll~~l~~~~~~~-v 251 (993)
. +...|...++ ..|+...+ ....+++..+. +..-|++++||.... .+++..+.+.++.+ +
T Consensus 123 ~------y~~v~~k~~~-~lGp~y~~lr~eF~~~r~~~~~r-----~~r~ilI~lGGsDpk~lt~kvl~~L~~~~~nl~i 190 (318)
T COG3980 123 Y------YGLVPNKTRY-YLGPGYAPLRPEFYALREENTER-----PKRDILITLGGSDPKNLTLKVLAELEQKNVNLHI 190 (318)
T ss_pred h------ccccCcceEE-EecCCceeccHHHHHhHHHHhhc-----chheEEEEccCCChhhhHHHHHHHhhccCeeEEE
Confidence 0 0001111111 12221110 11223333221 344589999988764 35565665555433 5
Q ss_pred EeCCCCCC---------CCCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH
Q 001939 252 VCGASDSQ---------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF 322 (993)
Q Consensus 252 v~G~~~~~---------l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~ 322 (993)
|+|+..+. ..+|+..+-...+|+++|..||+.|+.+| .|++|++..|+|.++++.. ..|-.-|.+++.
T Consensus 191 V~gs~~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~aI~AaG-stlyEa~~lgvP~l~l~~a--~NQ~~~a~~f~~ 267 (318)
T COG3980 191 VVGSSNPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADLAISAAG-STLYEALLLGVPSLVLPLA--ENQIATAKEFEA 267 (318)
T ss_pred EecCCCcchhHHHHHHhhCCCeeeEecchhHHHHHHhcchheeccc-hHHHHHHHhcCCceEEeee--ccHHHHHHHHHh
Confidence 66766554 25788877777889999999999999777 9999999999999999954 456678999999
Q ss_pred cCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 323 YQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 323 ~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
.|+...+... +....+...+.++..++
T Consensus 268 lg~~~~l~~~-l~~~~~~~~~~~i~~d~ 294 (318)
T COG3980 268 LGIIKQLGYH-LKDLAKDYEILQIQKDY 294 (318)
T ss_pred cCchhhccCC-CchHHHHHHHHHhhhCH
Confidence 9998877654 44556666666776665
No 83
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.52 E-value=7.9e-13 Score=152.78 Aligned_cols=319 Identities=17% Similarity=0.133 Sum_probs=170.8
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHH
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY 95 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 95 (993)
|+|++ +.|.-.||+.++. ++++|+++++++.+++.....+....+.. . + +.. .+.... ....+
T Consensus 2 ~ki~i-~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-~--~-----~~~-----~l~~~g--~~~~~ 64 (380)
T PRK00025 2 LRIAI-VAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGPRMQAAGCES-L--F-----DME-----ELAVMG--LVEVL 64 (380)
T ss_pred ceEEE-EecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccHHHHhCCCcc-c--c-----CHH-----Hhhhcc--HHHHH
Confidence 35643 4555579999999 99999999898887764332222222210 0 0 000 000000 01111
Q ss_pred HHHhhccHHHhHHHHHHHHhcCCCcEEEECC-C-chH--HHHHHHcCCcEEEE-ecCchhHHHHHHHhhcccchHHHHHH
Q 001939 96 SETAVAPRKSILKDEVEWLNSIKADLVVSDV-V-PVA--CRAAADAGIRSVCV-TNFSWDFIYAEYVMAAGHHHRSIVWQ 170 (993)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~-~~a--~laA~~~gIP~V~i-~~~~~~~~~~~y~~~~~~~~~~i~~~ 170 (993)
...+ .....+....+++++++||+|++.. . ++. ..+++..+||++.+ ++..|... ... ...
T Consensus 65 ~~~~--~~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~~~~-~~~-----------~~~ 130 (380)
T PRK00025 65 PRLP--RLLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVWAWR-QGR-----------AFK 130 (380)
T ss_pred HHHH--HHHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchhhcC-chH-----------HHH
Confidence 1111 1122345667889999999999643 2 233 23356779998876 33333200 000 001
Q ss_pred HHhhccccceeee-cCCCC----CCCCCCceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCChh----h-H
Q 001939 171 IAEDYSHCEFLIR-LPGYC----PMPAFRDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAGW----K-L 239 (993)
Q Consensus 171 l~~~y~~~d~ll~-~p~~~----~~p~~~~v~~vp~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~~----~-l 239 (993)
+. ..++.++. .+... .......++++|..... ....+.++++.++++++.++|++..|+.+... . +
T Consensus 131 ~~---~~~d~i~~~~~~~~~~~~~~g~~~~~~G~p~~~~~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l 207 (380)
T PRK00025 131 IA---KATDHVLALFPFEAAFYDKLGVPVTFVGHPLADAIPLLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPF 207 (380)
T ss_pred HH---HHHhhheeCCccCHHHHHhcCCCeEEECcCHHHhcccccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 10 01111111 00000 00000122333332221 11235567788888777777777777765431 1 1
Q ss_pred HH---hhC--CCCcEEEEeCC-CCC-C--------C-CCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEE
Q 001939 240 KE---EYL--PSGWKCLVCGA-SDS-Q--------L-PPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFV 303 (993)
Q Consensus 240 l~---~l~--~~~~~~vv~G~-~~~-~--------l-~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l 303 (993)
++ .+. .+++.+++.|. ... + . .-++.+. ..+++++|+.||++|+.+|.+++ |++++|+|+|
T Consensus 208 ~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~aDl~v~~sG~~~l-Ea~a~G~PvI 284 (380)
T PRK00025 208 LKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLL--DGQKREAMAAADAALAASGTVTL-ELALLKVPMV 284 (380)
T ss_pred HHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEE--cccHHHHHHhCCEEEECccHHHH-HHHHhCCCEE
Confidence 22 121 23556665543 221 1 2 2345553 35789999999999999997776 9999999999
Q ss_pred EEeCCCCCChHHHH------------HHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc-----------C-CCCH
Q 001939 304 FVRRDYFNEEPFLR------------NMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE-----------G-GING 359 (993)
Q Consensus 304 ~ip~~~~~EQ~~na------------~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~-----------~-~~~g 359 (993)
++|.... =+...+ +.+...+++..+..++.+++.+.+.|.++++++.... . .+++
T Consensus 285 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~a 363 (380)
T PRK00025 285 VGYKVSP-LTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQALLEGFTELHQQLRCGA 363 (380)
T ss_pred EEEccCH-HHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCH
Confidence 9964311 111222 3333333344444566778899999999998874321 1 6678
Q ss_pred HHHHHHHHHHHHc
Q 001939 360 GEVAAHILQETAI 372 (993)
Q Consensus 360 a~~~a~~i~~~~~ 372 (993)
+.++++.|.+++.
T Consensus 364 ~~~~~~~i~~~~~ 376 (380)
T PRK00025 364 DERAAQAVLELLK 376 (380)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888887754
No 84
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.48 E-value=1.7e-14 Score=146.94 Aligned_cols=127 Identities=20% Similarity=0.188 Sum_probs=95.4
Q ss_pred EEEEEcCCCCCh-h-----hHHHhhCCC--Cc-EEEEeCCCCCC--------CCCCeEECCCCCCHHHHHhhcCEEEecC
Q 001939 225 LLILNFGGQPAG-W-----KLKEEYLPS--GW-KCLVCGASDSQ--------LPPNFIKLPKDAYTPDFMAASDCMLGKI 287 (993)
Q Consensus 225 ~Vlvs~G~~~~~-~-----~ll~~l~~~--~~-~~vv~G~~~~~--------l~~nv~~~~~~~~~pdlL~~adl~It~~ 287 (993)
+|||++||.+.+ . ..+..+... ++ .++++|..... .+.|+.+++|.++|+++|+.||++|||+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlvIs~a 80 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKVENFNPNVKVFGFVDNMAELMAAADLVISHA 80 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCHCCTTCCCEEECSSSSHHHHHHHHSEEEECS
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHHhccCCcEEEEechhhHHHHHHHcCEEEeCC
Confidence 489999988874 1 111111111 23 44578876422 2368999999999999999999999999
Q ss_pred ChhHHHHHHHcCCcEEEEeCCCC--CChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCC
Q 001939 288 GYGTVSEALAYKLPFVFVRRDYF--NEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (993)
Q Consensus 288 G~~Tv~Eal~~GvP~l~ip~~~~--~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (993)
|.+|++|++++|+|+|++|.+.. .+|..|+..+++.|+++.+...+.+++.|.+.|.+++.++.
T Consensus 81 G~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~ 146 (167)
T PF04101_consen 81 GAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPE 146 (167)
T ss_dssp -CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH
T ss_pred CccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcH
Confidence 99999999999999999997653 38999999999999999999888888999999999987764
No 85
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.46 E-value=1.8e-12 Score=143.68 Aligned_cols=213 Identities=10% Similarity=0.072 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHhccccCCC
Q 001939 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHP-RDLALLCQKVENHIVGAP 688 (993)
Q Consensus 610 ~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~-~el~~la~~~E~~~~G~~ 688 (993)
.|.++.++..+.++.+.. .|++|.|.++||+++|||||||..++++.+++..++ ++. +++.++|.++|.
T Consensus 74 ~Nlv~ka~~~~~~~~~~~--~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~--l~~~e~L~~lA~~lGa------ 143 (297)
T PRK14613 74 QNILYKTFIKARSLFPEL--PGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRN--FFTSDEMQVFAKEIGS------ 143 (297)
T ss_pred cchHHHHHHHHHHHhCCC--CCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHhCC------
Confidence 688988888887777654 589999999999999999999998887777776554 444 677779988742
Q ss_pred CCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCccc
Q 001939 689 CGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQS 768 (993)
Q Consensus 689 ~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~ 768 (993)
| .++++||. ..+..... +...++++|+.+. +++..++.-+|.. .|
T Consensus 144 ----D-vP~~l~G~--~a~~~g~G-e~~~~l~~~~~~~-vlv~P~~~vsT~~-a~------------------------- 188 (297)
T PRK14613 144 ----D-VPFFLGEG--HAFVTGKG-EIMEEIEVHKGQG-ILALTPQVMNTGE-MY------------------------- 188 (297)
T ss_pred ----c-cchhhcCC--eEEEecCC-cEEEEcCCCCCeE-EEEECCCCcChHH-HH-------------------------
Confidence 6 45555653 23333333 2235566555554 5666666555431 00
Q ss_pred CCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCccccccccc
Q 001939 769 LPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPV 848 (993)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 848 (993)
..+|+.+. .+ ..
T Consensus 189 ------------------------------------------~~l~~~~~------------~~--------------~~ 200 (297)
T PRK14613 189 ------------------------------------------ALLKKPLQ------------ES--------------AS 200 (297)
T ss_pred ------------------------------------------Hhcchhhc------------cc--------------cc
Confidence 01111000 00 00
Q ss_pred ccccchhhHHHHHHHHHHccCChhHHHHHHH-HHHHhhhhhhhcCCCCchHHHHHHHHHHHhhhccccCCCCcccceeee
Q 001939 849 CHPIYENFRVKAFKALLTAAASDDQLTSLGE-LLYQCHYSYSACGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKIT 927 (993)
Q Consensus 849 ~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~-Lm~~sH~slr~~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~Gaklt 927 (993)
..++ +.|...+..++..+ |++.++. ++|.- +.++.- .+|+++++.+.+.+ .|++|++||
T Consensus 201 ~~~~--~~~~~~~~~al~~~----~~~~l~~~l~ndl-e~~~~~--l~P~~~~i~~~~~~-----------~Ga~~~~mS 260 (297)
T PRK14613 201 QKNG--NTLSEDLISSLKVG----DWVSLQGRLENDF-EPVAFQ--LHPELGVLKDKFLE-----------FGSSYCSLT 260 (297)
T ss_pred cccc--cccHHHHHHHHHcC----CHHHHHHHhcccc-hHHHHH--hCcHHHHHHHHHHH-----------cCCCEEEEE
Confidence 0000 12344566677665 7877755 45666 444442 38999999998876 689999999
Q ss_pred ccccCceEEEEccCCcccHHHHHHHHHHHH
Q 001939 928 GGGSGGTICVIGRNSLRSSEQVLEIQQRYK 957 (993)
Q Consensus 928 GaG~GG~vi~l~~~~~~~~~~~~~i~~~y~ 957 (993)
|+| +||+.+.++...+.++.+.+++.|.
T Consensus 261 GSG--ptvf~l~~~~~~a~~~~~~l~~~~~ 288 (297)
T PRK14613 261 GSG--SSMYGLVQGLEIQEELLPRLRQEFS 288 (297)
T ss_pred ccc--cceEEEeCCHHHHHHHHHHHHHhhc
Confidence 996 9999887654434455666665554
No 86
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.45 E-value=1.7e-13 Score=116.96 Aligned_cols=67 Identities=39% Similarity=0.607 Sum_probs=63.6
Q ss_pred EEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccc
Q 001939 633 SMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGE 701 (993)
Q Consensus 633 ~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg 701 (993)
+|+|+|+||.++|||||||++||++.+++++++.++++++++++++.+|+.+ |.++| +|+++++|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~-g~~~g-~d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYI-GKPSG-IDDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHC-SSSHS-HHHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHc-CCCCh-hhHHHHHhCc
Confidence 5899999999999999999999999999999999999999999999999877 99988 5789999997
No 87
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.37 E-value=4.1e-11 Score=138.69 Aligned_cols=317 Identities=13% Similarity=0.118 Sum_probs=175.2
Q ss_pred CcccHHHHHHHHHHHHH--CCCeEE---EEeCCCCcccccccCCCceEEeeeeccCCccccCcccc-ChHHHHHHHHHHh
Q 001939 26 GFGHATRVVEVVRNLIS--AGHDVH---VVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTV-DRLASLEKYSETA 99 (993)
Q Consensus 26 G~GH~~ralaLA~aL~~--~Gh~V~---~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~ 99 (993)
|.|--.-+++||++|++ .|++|. +++....+ ....++. .+ ........++.. .....+.....
T Consensus 6 ghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~-e~~~ip~-------~g-~~~~~~sgg~~~~~~~~~~~~~~~-- 74 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAY-QNLGIPI-------IG-PTKELPSGGFSYQSLRGLLRDLRA-- 74 (396)
T ss_pred CchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHH-hhCCCce-------eC-CCCCCCCCCccCCCHHHHHHHHHh--
Confidence 34666778999999998 599999 88665322 1222211 00 000011112211 11111222222
Q ss_pred hccHHHhHHHHHHHHhcC--CCcEEEECCCchHHHHHHHcCCcEEE---E-ecCchhH-----HHHHHHhhcccchHHH-
Q 001939 100 VAPRKSILKDEVEWLNSI--KADLVVSDVVPVACRAAADAGIRSVC---V-TNFSWDF-----IYAEYVMAAGHHHRSI- 167 (993)
Q Consensus 100 ~~~~~~~l~~~~~~L~~~--kPDlVVsD~~~~a~laA~~~gIP~V~---i-~~~~~~~-----~~~~y~~~~~~~~~~i- 167 (993)
.....+.+...+++++ +||+|++..-+...++|...++|++. + +|+.|.. ..+.|..-.|..+.++
T Consensus 75 --gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v~~~aA~~~~~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~e 152 (396)
T TIGR03492 75 --GLVGLTLGQWRALRKWAKKGDLIVAVGDIVPLLFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPWE 152 (396)
T ss_pred --hHHHHHHHHHHHHHHHhhcCCEEEEECcHHHHHHHHHcCCCceEEEeeccceeecCCCCCccchhhhccCCCccCHHH
Confidence 1222345557788888 99999987755588889999999998 4 5555421 0011111011111111
Q ss_pred HHHHHhhccccceeeecCCCCCC---C---CCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCCh----h
Q 001939 168 VWQIAEDYSHCEFLIRLPGYCPM---P---AFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG----W 237 (993)
Q Consensus 168 ~~~l~~~y~~~d~ll~~p~~~~~---p---~~~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~----~ 237 (993)
.+.+...+ ++.++ +++.... + ....+++.|.........+ . +++++.++|++..||.+.. .
T Consensus 153 ~n~l~~~~--a~~v~-~~~~~t~~~l~~~g~k~~~vGnPv~d~l~~~~~----~--~l~~~~~~lllLpGSR~ae~~~~l 223 (396)
T TIGR03492 153 RWLMRSRR--CLAVF-VRDRLTARDLRRQGVRASYLGNPMMDGLEPPER----K--PLLTGRFRIALLPGSRPPEAYRNL 223 (396)
T ss_pred HHHhhchh--hCEEe-CCCHHHHHHHHHCCCeEEEeCcCHHhcCccccc----c--ccCCCCCEEEEECCCCHHHHHccH
Confidence 01122111 22222 1111100 0 0112345555433221111 1 4455677888888988663 1
Q ss_pred -hHHH---hhCC-CCcEEE-Ee-CCCCCC----------CC--------------CCeEECCCCCCHHHHHhhcCEEEec
Q 001939 238 -KLKE---EYLP-SGWKCL-VC-GASDSQ----------LP--------------PNFIKLPKDAYTPDFMAASDCMLGK 286 (993)
Q Consensus 238 -~ll~---~l~~-~~~~~v-v~-G~~~~~----------l~--------------~nv~~~~~~~~~pdlL~~adl~It~ 286 (993)
.+++ .+.. ++..++ .+ |....+ +. +++.+..|..+++++|++||++|+.
T Consensus 224 p~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADlvI~r 303 (396)
T TIGR03492 224 KLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAM 303 (396)
T ss_pred HHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCEEEEC
Confidence 1222 2221 345443 34 433211 11 2356666777789999999999999
Q ss_pred CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc----CcEEEEecCCCChhhHHHHHHHHHhCCCCcc--------
Q 001939 287 IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY----QGGVEMIRRDLLTGHWKPYLERAISLKPCYE-------- 354 (993)
Q Consensus 287 ~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~----G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~-------- 354 (993)
+|..| .|++++|+|+|++|.+ ..| .|+..+++. |.++.+...+ .+.+.+.+.+++.++..+.
T Consensus 304 SGt~T-~E~a~lg~P~Ilip~~--~~q-~na~~~~~~~~l~g~~~~l~~~~--~~~l~~~l~~ll~d~~~~~~~~~~~~~ 377 (396)
T TIGR03492 304 AGTAT-EQAVGLGKPVIQLPGK--GPQ-FTYGFAEAQSRLLGGSVFLASKN--PEQAAQVVRQLLADPELLERCRRNGQE 377 (396)
T ss_pred cCHHH-HHHHHhCCCEEEEeCC--CCH-HHHHHHHhhHhhcCCEEecCCCC--HHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 99655 9999999999999954 346 499888874 7777766443 4789999999988764221
Q ss_pred --CCCCHHHHHHHHHHHH
Q 001939 355 --GGINGGEVAAHILQET 370 (993)
Q Consensus 355 --~~~~ga~~~a~~i~~~ 370 (993)
..++++.++++.|.+.
T Consensus 378 ~lg~~~a~~~ia~~i~~~ 395 (396)
T TIGR03492 378 RMGPPGASARIAESILKQ 395 (396)
T ss_pred hcCCCCHHHHHHHHHHHh
Confidence 4567777777777654
No 88
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.28 E-value=1.1e-09 Score=130.20 Aligned_cols=307 Identities=15% Similarity=0.033 Sum_probs=162.5
Q ss_pred CCcEEEEEecCCCC----cccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccCh
Q 001939 13 SKHLVFAYYVTGHG----FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDR 88 (993)
Q Consensus 13 m~~~~Il~~v~g~G----~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (993)
+++|+|+.++.... .|=..+...++++|.++||+|++++..+... .. . ..+.+... ...... .+. ..
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~-~~-~--~g~~v~~~-~~~~~~---~~~-~~ 126 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVP-QE-F--HGAKVIGS-WSFPCP---FYQ-KV 126 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCC-cc-c--cCceeecc-CCcCCc---cCC-Cc
Confidence 67788877754221 3445788999999999999999998764221 00 0 01111000 000000 000 00
Q ss_pred HHHHHHHHHHhhccHHHhHHHHHHHHhcCCCcEEEECCCc----hHHHHHHHcCCcEEEEecCchhHHHHHHHhhcccch
Q 001939 89 LASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVP----VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHH 164 (993)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~----~a~laA~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~ 164 (993)
...+. ......+++++.+||+|+++... .+..+++..++|+|...+..+......+.. ....
T Consensus 127 ------~~~~~------~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~--~~~~ 192 (465)
T PLN02871 127 ------PLSLA------LSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTF--SWLV 192 (465)
T ss_pred ------eeecc------CCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchhhhhcccc--hhhH
Confidence 00000 01133566788999999976532 234457788999887422111100000000 0000
Q ss_pred HHHHHHHHhhccccceeeecCCC---------CCCCCCCceeecCccccc--CCcChHHHHHHhCC-CCCCcEEEEEcCC
Q 001939 165 RSIVWQIAEDYSHCEFLIRLPGY---------CPMPAFRDVIDVPLVVRR--LHKSRKEVRKELGI-EDDVKLLILNFGG 232 (993)
Q Consensus 165 ~~i~~~l~~~y~~~d~ll~~p~~---------~~~p~~~~v~~vp~~~~~--~~~~~~~~r~~l~~-~~~~~~Vlvs~G~ 232 (993)
..+.......+..++.++..... ...+....+.+.|+.... +.....+.+..+.. .+++ .++++.|+
T Consensus 193 ~~~~~~~r~~~~~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~-~~i~~vGr 271 (465)
T PLN02871 193 KPMWDIIRFLHRAADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEK-PLIVYVGR 271 (465)
T ss_pred HHHHHHHHHHHhhCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCC-eEEEEeCC
Confidence 00100011122233433322110 000111223334443221 22223445555432 2244 45677788
Q ss_pred CCCh--hh-HHHhhC-CCCcEEEEeCCCCCC-------CCCCeEECCCC--CCHHHHHhhcCEEEecCC----hhHHHHH
Q 001939 233 QPAG--WK-LKEEYL-PSGWKCLVCGASDSQ-------LPPNFIKLPKD--AYTPDFMAASDCMLGKIG----YGTVSEA 295 (993)
Q Consensus 233 ~~~~--~~-ll~~l~-~~~~~~vv~G~~~~~-------l~~nv~~~~~~--~~~pdlL~~adl~It~~G----~~Tv~Ea 295 (993)
.+.. .+ +++.+. .+++.++++|..... ...||++.|++ ++++++|+.||++|..+. ..++.||
T Consensus 272 l~~~K~~~~li~a~~~~~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEA 351 (465)
T PLN02871 272 LGAEKNLDFLKRVMERLPGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEA 351 (465)
T ss_pred CchhhhHHHHHHHHHhCCCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHH
Confidence 7663 22 222221 147788888865421 24679999998 468899999999997543 3478999
Q ss_pred HHcCCcEEEEeCCCCCChHHHHHHHHH---cCcEEEEecCCCChhhHHHHHHHHHhCCC
Q 001939 296 LAYKLPFVFVRRDYFNEEPFLRNMLEF---YQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (993)
Q Consensus 296 l~~GvP~l~ip~~~~~EQ~~na~~l~~---~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (993)
|++|+|+|+....+..| .++. .+.|..++..+ ++.+.++|.++++++.
T Consensus 352 mA~G~PVI~s~~gg~~e------iv~~~~~~~~G~lv~~~d--~~~la~~i~~ll~~~~ 402 (465)
T PLN02871 352 MASGVPVVAARAGGIPD------IIPPDQEGKTGFLYTPGD--VDDCVEKLETLLADPE 402 (465)
T ss_pred HHcCCCEEEcCCCCcHh------hhhcCCCCCceEEeCCCC--HHHHHHHHHHHHhCHH
Confidence 99999999987543333 3555 67898887665 5789999999998764
No 89
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.28 E-value=2.8e-10 Score=125.59 Aligned_cols=111 Identities=19% Similarity=0.139 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCC
Q 001939 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (993)
Q Consensus 610 ~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~ 689 (993)
.|+++.++..+++..+.. .|++|.|.++||+++|||||||-.+|++.+++++++ ++.+++.++|.++
T Consensus 65 ~Nlv~kA~~~l~~~~~~~--~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~l--------- 131 (283)
T PRK14610 65 NNTVQRAIGLLLRHSPVR--TNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALSV--------- 131 (283)
T ss_pred CcHHHHHHHHHHHHhCCC--CCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHh---------
Confidence 688888888877777754 599999999999999999999999999999999996 6999999999862
Q ss_pred CcchhhHhhccccceEEEEeecCccceeeecC-CCCeEEEEEeC-CCcccc
Q 001939 690 GVMDQMASACGEANKLLAMVCQPAELLGVVEI-PSHIRFWGIDS-GIRHSV 738 (993)
Q Consensus 690 G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~-p~~~~~ll~dS-gv~~~~ 738 (993)
| .|.-.+++||. .+..... +..++++. +....++++.. ++.-+|
T Consensus 132 G-aDvPffl~g~~---a~~~G~G-e~l~~l~~~~~~~~~vl~~p~~~~~sT 177 (283)
T PRK14610 132 G-SDVPACLDSKT---LFVRGIG-EDILLLPDLSLPTYVVLVAPKGKFLST 177 (283)
T ss_pred C-CCCcEEEECCe---EEEEecc-cEEEECcccCCCCeEEEEECCCCccCh
Confidence 4 58888888874 3443333 32344432 12334677654 444343
No 90
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.28 E-value=1.7e-10 Score=125.89 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCC
Q 001939 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (993)
Q Consensus 610 ~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~ 689 (993)
.|.++.++..+.+..+.. .|++|.+.++||+++|||||||-.+|++.+++++++.++++++|.++|.++|.
T Consensus 61 ~Nlv~ra~~~l~~~~g~~--~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lGa------- 131 (288)
T PRK00650 61 SNSIWKSVALFRRYTGIT--TPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIGM------- 131 (288)
T ss_pred ccHHHHHHHHHHHHhCCC--CCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-------
Confidence 688888888777777754 58999999999999999999999999999999999999999999999999885
Q ss_pred CcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCCCc
Q 001939 690 GVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIR 735 (993)
Q Consensus 690 G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv~ 735 (993)
|--.++.||. ++ ..... +..+.++.+++..++++..++.
T Consensus 132 ---DvPffl~~g~--a~-~~G~G-e~l~~~~~~~~~~~vlv~P~~~ 170 (288)
T PRK00650 132 ---DTPFFFSTGS--AL-GVGRG-EKIIALEESVSDRYVLYFSSEG 170 (288)
T ss_pred ---cchhhhcCce--EE-EEecC-CEEEECcCCCCceEEEEeCCCC
Confidence 3323444442 22 22222 2234555445567788765443
No 91
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=7.6e-14 Score=155.62 Aligned_cols=407 Identities=35% Similarity=0.413 Sum_probs=266.5
Q ss_pred HHHcCCcEEEEecCchhHHHHHHHhhcccchHHHHHHHHhhccccceeeecCCCCCCCCCCceeecCcccccCCcChHHH
Q 001939 134 AADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEV 213 (993)
Q Consensus 134 A~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~~l~~~y~~~d~ll~~p~~~~~p~~~~v~~vp~~~~~~~~~~~~~ 213 (993)
....++|.++++|+.|.+.+..|.. ..+.+++...+.+...++. |+++.+..+. . +.+.
T Consensus 77 ~~~d~~~sl~~tN~~~~f~~~~~~~------p~~~~~I~~~~~~w~ny~~----C~~~g~h~~~-----~------~~~~ 135 (489)
T KOG0631|consen 77 PSDDGIVSLRLTNFNPDFIYFKYPL------PSIVWQIDPDVSKWENYFY----CGMKGFHEYI-----K------RKPV 135 (489)
T ss_pred EcCCCceeEEEecCCCccceeeccC------CchhcccCCCccchhhhhc----cchHHHHHHH-----h------cccc
Confidence 3445799999999998866655432 1134555555544433332 2333322221 0 0011
Q ss_pred HHHhCCCCCCcEEEEEcCCCCChhhHHHhhCCCCcEEEEeCCCCCC-CCCCeEECCCCCCHHHHHhhcCEEEecCChhHH
Q 001939 214 RKELGIEDDVKLLILNFGGQPAGWKLKEEYLPSGWKCLVCGASDSQ-LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTV 292 (993)
Q Consensus 214 r~~l~~~~~~~~Vlvs~G~~~~~~~ll~~l~~~~~~~vv~G~~~~~-l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv 292 (993)
+... ..++.++..|++..++.+-+. ..|.+.+++..... +++|+....-.-..++..++.++.+..+|+.+.
T Consensus 136 ~~~~----~vGl~~l~~g~vPtgsgLsSs---aa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~~~ae~~~G~~~gGmdq~ 208 (489)
T KOG0631|consen 136 RFEP----PVGLSILNDGSVPTGSGLSSS---AAWLCAAALATLKLNLGPNFIISKKDLATITVVAESYIGLNSGGMDQA 208 (489)
T ss_pred ccCC----CcceEEEecCCCCCCCCcchh---HHHHHHHHHHHHHHhcCCCcccchhhhhcceEEeecccCcCCCcHHHH
Confidence 1111 156778888887765222221 12222222222111 356654422111223556778888899999999
Q ss_pred HHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCccCCCCHHHHHHHHHHHHHc
Q 001939 293 SEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYEGGINGGEVAAHILQETAI 372 (993)
Q Consensus 293 ~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~~~~~ga~~~a~~i~~~~~ 372 (993)
.|.++...+.+.+. +. +.+..+..++..-.|+.+..+++....+.....+..+.+ .+.....+-.-++++..+..
T Consensus 209 asvl~~~~~Al~v~-~~--~~Pf~~~~lk~~~~~vfvI~~~L~~~nk~~~a~tnynlR-v~E~~ia~~~la~k~~~~~~- 283 (489)
T KOG0631|consen 209 ASVLAEKGHALLVD-PY--FTPFRRSMLKLPDGGVFVIANSLVESNKAETAETNYNLR-VVEGTIAAGELAAKILVELP- 283 (489)
T ss_pred HHHHHhcCceEEec-cc--CCccccccccCCCCceEEEechhhhhcchhhhhhhhhce-eEeeehhhHHHHHHhhcccH-
Confidence 99999999999998 32 446778889999999999998887777766666665554 45566666666666666541
Q ss_pred cCccccCCCCcchhhhHhhhhhhhhcccCCCccccccccccccccccccCCCCCCCCCCCCCccccccccceeccCCCCC
Q 001939 373 GKNYASDKLSGARRLRDAIIFGYELQRVPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLSTEDFEILHGDCQG 452 (993)
Q Consensus 373 ~~~~~~~~~~Ga~~Lr~a~~~~~~~q~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (993)
++.++|+.|++ +++ .+|.||+.++++|++ + +..++++ +|++++.|-+.
T Consensus 284 -----------------~~~~~~~~~~~-~~~-~i~~~~~~~~~~l~~---v---~~~~~~e-------~f~~ee~~~~l 331 (489)
T KOG0631|consen 284 -----------------AYILRYQLQRA-WRG-DIGEGYERAEEMLGL---V---EESLKPE-------GFNIEEVARAL 331 (489)
T ss_pred -----------------HHHHhhhhhhc-ccc-ccchhHHHHHHHHHH---H---HhhcCcC-------CCCHHHHHHHh
Confidence 66788999999 888 999999999998883 2 3333332 89999999999
Q ss_pred CchHHHHHHHHhhccccccCCCChhHHHHHHHHHHhcCCCCCCceEEEEcCcccccccccccccCCeeeccccccceEEE
Q 001939 453 LPDTMSFLKSLVELDIIKDSDRTPEKRQMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVA 532 (993)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~ 532 (993)
+.|+..|++++..+....... ..-.+++++.....++.|+.+..+.++|+|.+ |.-.||. .|-+...+.|.+.
T Consensus 332 ~~~~~~f~~~~~T~~~v~~~~--~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d--~~~~~~g---~LmneS~~Sc~~~ 404 (489)
T KOG0631|consen 332 GLDTEEFLQSLLTLAAVDLQV--KKLYQRAKHVYSEALRVLQEEKLCARAPGRAD--GFLADFG---RLMNESHRSCDVL 404 (489)
T ss_pred ccchHHHHHHhccccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCccchh--hhHHHHH---HHhhhhhHHHHHH
Confidence 999999999999987775543 11235566777778888888888999999999 8788876 8889999999999
Q ss_pred EEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCceeccCCccc-cCCCCcchHhhhcccCCCCCCChHH
Q 001939 533 LQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTFDMDLSDFM-DEGKPMSYEKAKKYFDTNPSQKWAA 611 (993)
Q Consensus 533 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~ 611 (993)
...+-+...+||++.++++... +.+.....+....+..+ .|..+.+ ....++.|+|+..+|.+++...|.-
T Consensus 405 yEcscpel~qL~kiala~g~~g-----aRlTGaGwGGc~v~lvp---~d~~~~~~~~~~~~~Y~ka~~~~~~~~~k~~~~ 476 (489)
T KOG0631|consen 405 YECSCPELDQLCKIALANGGVG-----ARLTGAGWGGCTVALVP---ADLVDFAVAALKEIYYEKAYPKFAQDELKKALI 476 (489)
T ss_pred HhcCCHhHHHHHHHHHhcCCcc-----ceeeccccccceeeecc---ccchHHHHHhhhhhhhccccchhhhchhhceEE
Confidence 9999888999999998765443 34554443322222222 1211111 1124667888777777766667776
Q ss_pred HHHHHHHHH
Q 001939 612 YVAGTILVL 620 (993)
Q Consensus 612 yv~~~i~~~ 620 (993)
+.++++-.+
T Consensus 477 ~skp~~g~~ 485 (489)
T KOG0631|consen 477 VSKPAAGVL 485 (489)
T ss_pred EecCchhhh
Confidence 666655443
No 92
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.18 E-value=2.9e-09 Score=122.06 Aligned_cols=131 Identities=13% Similarity=0.108 Sum_probs=90.8
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCCh---hhHHHh---hC-CCCcEEEEeCCCCCC-----------CCCCeEECCCCCC
Q 001939 211 KEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YL-PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAY 272 (993)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~G~~~~~---~~ll~~---l~-~~~~~~vv~G~~~~~-----------l~~nv~~~~~~~~ 272 (993)
...++.++.+++. .+++++|..... ..+++. +. ..++.++++|..... +.+++++.++.++
T Consensus 185 ~~~~~~~~~~~~~-~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~ 263 (371)
T cd04962 185 EALKRRLGAPEGE-KVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDH 263 (371)
T ss_pred HHHHHhcCCCCCC-eEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCccc
Confidence 3455566665444 456777766542 223332 22 135677888876421 3578999999988
Q ss_pred HHHHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHh
Q 001939 273 TPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAIS 348 (993)
Q Consensus 273 ~pdlL~~adl~It~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~ 348 (993)
++++|+.||++|..+ ...++.||+++|+|+|+.+.... .+.++....|..++..+ .+.+.++|.++++
T Consensus 264 ~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~~------~e~i~~~~~G~~~~~~~--~~~l~~~i~~l~~ 335 (371)
T cd04962 264 VEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGGI------PEVVKHGETGFLVDVGD--VEAMAEYALSLLE 335 (371)
T ss_pred HHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCCc------hhhhcCCCceEEcCCCC--HHHHHHHHHHHHh
Confidence 999999999999643 34699999999999999875433 33455656787777654 5788999999987
Q ss_pred CC
Q 001939 349 LK 350 (993)
Q Consensus 349 ~~ 350 (993)
++
T Consensus 336 ~~ 337 (371)
T cd04962 336 DD 337 (371)
T ss_pred CH
Confidence 76
No 93
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.16 E-value=7.4e-09 Score=117.35 Aligned_cols=289 Identities=16% Similarity=0.112 Sum_probs=154.3
Q ss_pred cccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHHHHHhhccHHHh
Q 001939 27 FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSI 106 (993)
Q Consensus 27 ~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (993)
.|+..+...++++|.++||+|++++........... ....++.. ..... ...... . ..
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~--~~~~~~---------------~-~~ 71 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA--RVVPVPSV--PLPGY--PEIRLA---------------L-PP 71 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC--Cceeeccc--ccCcc--cceEec---------------c-cc
Confidence 789999999999999999999999876421111000 01111110 00000 000000 0 00
Q ss_pred HHHHHHHHhcCCCcEEEECCC----chHHHHHHHcCCcEEEEecCchhHHHHHHHhhcccchHHHHHH-HHhhcccccee
Q 001939 107 LKDEVEWLNSIKADLVVSDVV----PVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQ-IAEDYSHCEFL 181 (993)
Q Consensus 107 l~~~~~~L~~~kPDlVVsD~~----~~a~laA~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~~-l~~~y~~~d~l 181 (993)
.......+++.+||+|+.+.. ..+..+++..++|++..-+..|......+.. ......... ....+..++.+
T Consensus 72 ~~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~i 148 (364)
T cd03814 72 RRRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRYYGL---GPLSWLAWAYLRWFHNRADRV 148 (364)
T ss_pred hhhHHHHHHhcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhhccc---chHhHhhHHHHHHHHHhCCEE
Confidence 112244567899999987642 2345566778999887533222211111000 000111011 11122333433
Q ss_pred eecCCCC----CCCCCCcee--ecCcccc--cCCcChHHHHHHhCCCCCCcEEEEEcCCCCCh--hh-HHH---hhCC-C
Q 001939 182 IRLPGYC----PMPAFRDVI--DVPLVVR--RLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WK-LKE---EYLP-S 246 (993)
Q Consensus 182 l~~p~~~----~~p~~~~v~--~vp~~~~--~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~~-ll~---~l~~-~ 246 (993)
+...... .......+. +.|+... .+.......++.++ . ..+.++++.|+.... .+ +++ .+.. +
T Consensus 149 ~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~ 226 (364)
T cd03814 149 LVPSPSLADELRARGFRRVRLWPRGVDTELFHPRRRDEALRARLG-P-PDRPVLLYVGRLAPEKNLEALLDADLPLRRRP 226 (364)
T ss_pred EeCCHHHHHHHhccCCCceeecCCCccccccCcccccHHHHHHhC-C-CCCeEEEEEeccccccCHHHHHHHHHHhhhcC
Confidence 3221100 000011122 2222211 11112223344444 2 334566777765542 22 222 2322 4
Q ss_pred CcEEEEeCCCCCC-----CCCCeEECCCCC--CHHHHHhhcCEEEecCC----hhHHHHHHHcCCcEEEEeCCCCCChHH
Q 001939 247 GWKCLVCGASDSQ-----LPPNFIKLPKDA--YTPDFMAASDCMLGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPF 315 (993)
Q Consensus 247 ~~~~vv~G~~~~~-----l~~nv~~~~~~~--~~pdlL~~adl~It~~G----~~Tv~Eal~~GvP~l~ip~~~~~EQ~~ 315 (993)
++.++++|..... ..+|+.+.++.+ .++++|+.||++|..+. .+++.||+++|+|+|+.+....
T Consensus 227 ~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~----- 301 (364)
T cd03814 227 PVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGP----- 301 (364)
T ss_pred CceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCc-----
Confidence 6788888875432 467899988753 57799999999997653 3689999999999999875433
Q ss_pred HHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 316 LRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 316 na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
.+.++..+.|..++..+ .+.|..+|.+++.++
T Consensus 302 -~~~i~~~~~g~~~~~~~--~~~l~~~i~~l~~~~ 333 (364)
T cd03814 302 -ADIVTDGENGLLVEPGD--AEAFAAALAALLADP 333 (364)
T ss_pred -hhhhcCCcceEEcCCCC--HHHHHHHHHHHHcCH
Confidence 34466678898887655 467999999999876
No 94
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.16 E-value=4.6e-09 Score=109.73 Aligned_cols=165 Identities=21% Similarity=0.287 Sum_probs=115.1
Q ss_pred EEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCce
Q 001939 499 VARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPTF 578 (993)
Q Consensus 499 ~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~~ 578 (993)
.++|+|-+.++--.++-.|+- ++|++.+.+.++..++.+++ .+ -
T Consensus 4 ~a~A~g~~TIiNAiatG~G~A---fgidL~v~a~v~~~~~~~~~-----------------------------~~----~ 47 (278)
T COG1685 4 RARAYGGGTIINAIATGKGSA---FGIDLKVEAEVRLSDEGKVR-----------------------------GE----P 47 (278)
T ss_pred eEEecCceeEeeehhcCccce---eeecceEEEEEEEcCccccc-----------------------------cC----C
Confidence 367888887777777776664 88999888888876533210 00 0
Q ss_pred eccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHH
Q 001939 579 DMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMS 658 (993)
Q Consensus 579 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~ 658 (993)
+.| .+.+..++..+.+++|.. .|+++.++|+||.++||.||+|++.|++.
T Consensus 48 ~~d----------------------------~~li~~~~~~v~e~~g~~--~~~~v~v~SeiP~~~GLkSSSA~~nAlv~ 97 (278)
T COG1685 48 EGD----------------------------TRLIERCVERVREKYGIP--LGVEVEVESEIPVGSGLKSSSAASNALVK 97 (278)
T ss_pred CCC----------------------------hHHHHHHHHHHHHHcCCC--cceEEEEecCCCcccCcchhHHHHHHHHH
Confidence 000 234445566677777865 58999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHhccccCCC-CCcch-hhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCCC
Q 001939 659 AIAAAHGLNIHPRDLALLCQKVENHIVGAP-CGVMD-QMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGI 734 (993)
Q Consensus 659 al~~~~g~~l~~~el~~la~~~E~~~~G~~-~G~mD-q~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv 734 (993)
|+..+.|.++++.+++++..++-+. .|.. .|-.| ..+|.||| ..+.|.+.+++......+ ++..+|.-.+.
T Consensus 98 A~~~~~g~~~~~~~i~~l~a~~S~~-aGvSvTGA~DDa~AS~~GG---~~iTDN~~m~Ilrr~~~~-~~~vlI~~p~~ 170 (278)
T COG1685 98 AVLKALGEEIDDFEILRLGARASKE-AGVSVTGAFDDACASYLGG---IVITDNRKMRILRRLDLP-ELTVLILAPGE 170 (278)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHHh-cCceEeccchHHHHHHhCC---eEEecchhheehhccccC-CceEEEEecCC
Confidence 9999999999999999998877654 2432 34444 55789999 455666655443333443 55666654443
No 95
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=99.12 E-value=7.5e-09 Score=114.71 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCC
Q 001939 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (993)
Q Consensus 610 ~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~ 689 (993)
.+.+..++..+.+..+.. .+++|.+.++||.++|||||||..+|++.|++.+++.++++.++.++|.++|. ..|
T Consensus 66 ~~~v~~~l~~~~~~~~~~--~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gsG----sa~ 139 (305)
T TIGR01240 66 NEKTSNCLDDFRQLRKEQ--EKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGSG----SAC 139 (305)
T ss_pred hHHHHHHHHHHHHhcCCC--CceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC----Cee
Confidence 456666666655544543 58999999999999999999999999999999999999999999999998874 344
Q ss_pred CcchhhHhhcccc
Q 001939 690 GVMDQMASACGEA 702 (993)
Q Consensus 690 G~mDq~~~~~Gg~ 702 (993)
+ |++||.
T Consensus 140 ~------s~~GG~ 146 (305)
T TIGR01240 140 R------SLFGGY 146 (305)
T ss_pred e------eeecCe
Confidence 4 889995
No 96
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.10 E-value=1.8e-08 Score=118.00 Aligned_cols=119 Identities=14% Similarity=0.181 Sum_probs=80.7
Q ss_pred CCCcEEEEEcCCCCCh--h-hHHHh---hC--------CCCcEEEEeCCCCCC---------CC-CCeEEC-CCC--CCH
Q 001939 221 DDVKLLILNFGGQPAG--W-KLKEE---YL--------PSGWKCLVCGASDSQ---------LP-PNFIKL-PKD--AYT 273 (993)
Q Consensus 221 ~~~~~Vlvs~G~~~~~--~-~ll~~---l~--------~~~~~~vv~G~~~~~---------l~-~nv~~~-~~~--~~~ 273 (993)
++++.++++.|+.... . .++++ +. .+++.++++|.+... +. +|+.++ +|. +.+
T Consensus 229 ~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~ 308 (415)
T cd03816 229 EERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDY 308 (415)
T ss_pred CCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHH
Confidence 3556677777876542 2 23332 21 135788888876521 11 466654 565 467
Q ss_pred HHHHhhcCEEEe----cCC---hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 001939 274 PDFMAASDCMLG----KIG---YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (993)
Q Consensus 274 pdlL~~adl~It----~~G---~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (993)
|++|+.||++|. ..| .+++.|||++|+|+|+.... ...+.+++.+.|+.+. +++.+.++|.++
T Consensus 309 ~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~------~~~eiv~~~~~G~lv~----d~~~la~~i~~l 378 (415)
T cd03816 309 PKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK------CIDELVKHGENGLVFG----DSEELAEQLIDL 378 (415)
T ss_pred HHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCC------CHHHHhcCCCCEEEEC----CHHHHHHHHHHH
Confidence 899999999994 222 45799999999999997632 2345577777898873 468999999999
Q ss_pred HhC
Q 001939 347 ISL 349 (993)
Q Consensus 347 l~~ 349 (993)
+++
T Consensus 379 l~~ 381 (415)
T cd03816 379 LSN 381 (415)
T ss_pred Hhc
Confidence 988
No 97
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.09 E-value=1.4e-10 Score=103.86 Aligned_cols=82 Identities=22% Similarity=0.345 Sum_probs=67.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhhhh--hhhcCCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEE
Q 001939 861 FKALLTAAASDDQLTSLGELLYQCHYS--YSACGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVI 938 (993)
Q Consensus 861 ~~~al~~~~~~~~l~~lG~Lm~~sH~s--lr~~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l 938 (993)
++++|.++ |++.|+++|+++|.+ ....++.+|+++.+++.+++ .|++|++|||+||||||++|
T Consensus 1 m~~al~~~----d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------~Ga~~~~~sGsG~G~~v~~l 65 (85)
T PF08544_consen 1 MIKALAEG----DLELLGELMNENQENEPENYREVLTPEIDELKEAAEE-----------NGALGAKMSGSGGGPTVFAL 65 (85)
T ss_dssp HHHHHHTT----CHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-----------TTESEEEEETTSSSSEEEEE
T ss_pred CHHHHHCc----CHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHH-----------CCCCceecCCCCCCCeEEEE
Confidence 35677775 999999999999885 33446689999999999987 68999999999999999988
Q ss_pred ccCCcccHHHHHHHHHHHH
Q 001939 939 GRNSLRSSEQVLEIQQRYK 957 (993)
Q Consensus 939 ~~~~~~~~~~~~~i~~~y~ 957 (993)
.++..+++++.+++++.|+
T Consensus 66 ~~~~~~~~~v~~~l~~~~~ 84 (85)
T PF08544_consen 66 CKDEDDAERVAEALREHYK 84 (85)
T ss_dssp ESSHHHHHHHHHHHHHHTH
T ss_pred ECCHHHHHHHHHHHHHhCC
Confidence 8555445678888877775
No 98
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.09 E-value=1.2e-08 Score=116.17 Aligned_cols=134 Identities=23% Similarity=0.220 Sum_probs=90.9
Q ss_pred ChHHHHHHhCCCCCCcEEEEEcCCCC---Chh-hHHHh---hCC---CCcEEEEeCCCCCC----CCCCeEECCCCC---
Q 001939 209 SRKEVRKELGIEDDVKLLILNFGGQP---AGW-KLKEE---YLP---SGWKCLVCGASDSQ----LPPNFIKLPKDA--- 271 (993)
Q Consensus 209 ~~~~~r~~l~~~~~~~~Vlvs~G~~~---~~~-~ll~~---l~~---~~~~~vv~G~~~~~----l~~nv~~~~~~~--- 271 (993)
.+...++.++++++..++++...+.. .+. .+++. +.. +++.++++|..... +..++.+.++.+
T Consensus 177 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~~~~~~v~~~g~~~~~~ 256 (365)
T cd03825 177 DKREARKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPPDLPFPVHYLGSLNDDE 256 (365)
T ss_pred cHHHHHHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhccCCCceEecCCcCCHH
Confidence 34556777787766665544333322 222 23332 222 55677888876543 467888889887
Q ss_pred CHHHHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHH
Q 001939 272 YTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (993)
Q Consensus 272 ~~pdlL~~adl~It~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll 347 (993)
.++++|+.||++|..+ ..+++.||+++|+|+|+...+...|. +...+.|..++..+ .+.|.++|.+++
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~------~~~~~~g~~~~~~~--~~~~~~~l~~l~ 328 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDI------VDHGVTGYLAKPGD--PEDLAEGIEWLL 328 (365)
T ss_pred HHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhh------eeCCCceEEeCCCC--HHHHHHHHHHHH
Confidence 3668999999999854 34799999999999999876554443 44455787776544 578999999998
Q ss_pred hCC
Q 001939 348 SLK 350 (993)
Q Consensus 348 ~~~ 350 (993)
+++
T Consensus 329 ~~~ 331 (365)
T cd03825 329 ADP 331 (365)
T ss_pred hCH
Confidence 776
No 99
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.08 E-value=1.1e-08 Score=115.57 Aligned_cols=122 Identities=18% Similarity=0.071 Sum_probs=86.8
Q ss_pred CCcEEEEEcCCCCCh--hh-HHH---hhCCCCcEEEEeCCCCCC--------CCCCeEECCCC--CCHHHHHhhcCEEEe
Q 001939 222 DVKLLILNFGGQPAG--WK-LKE---EYLPSGWKCLVCGASDSQ--------LPPNFIKLPKD--AYTPDFMAASDCMLG 285 (993)
Q Consensus 222 ~~~~Vlvs~G~~~~~--~~-ll~---~l~~~~~~~vv~G~~~~~--------l~~nv~~~~~~--~~~pdlL~~adl~It 285 (993)
+.+.+++..|+.... .. +++ .+..+++.++++|..... ..+|+++.++. +.++++|+.||++|.
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ 268 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVV 268 (359)
T ss_pred CCceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEE
Confidence 445667778876542 22 222 232247788888876542 24789999988 456789999999995
Q ss_pred c-----CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCC
Q 001939 286 K-----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (993)
Q Consensus 286 ~-----~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (993)
. +...++.||+++|+|+|+.+.+ .+.+.+...+.|..+...+ .+.|.++|.++++++.
T Consensus 269 ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~------~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~~ 331 (359)
T cd03823 269 PSIWPENFPLVIREALAAGVPVIASDIG------GMAELVRDGVNGLLFPPGD--AEDLAAALERLIDDPD 331 (359)
T ss_pred cCcccCCCChHHHHHHHCCCCEEECCCC------CHHHHhcCCCcEEEECCCC--HHHHHHHHHHHHhChH
Confidence 3 2345899999999999997643 2345566666898888766 5799999999998763
No 100
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.07 E-value=3.2e-08 Score=112.17 Aligned_cols=296 Identities=20% Similarity=0.186 Sum_probs=156.9
Q ss_pred CCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHHHHHhhccH
Q 001939 24 GHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPR 103 (993)
Q Consensus 24 g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (993)
....|+..++..++++|.++||+|++++............ ..+... .. . . . ........+ .
T Consensus 11 p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~---~~~~~~--~~--~---~---~---~~~~~~~~~--~- 71 (374)
T cd03817 11 PQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEV---VVVRPF--RV--P---T---F---KYPDFRLPL--P- 71 (374)
T ss_pred CCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccccc---cccccc--cc--c---c---c---hhhhhhccc--c-
Confidence 4457999999999999999999999987654221111000 000000 00 0 0 0 000000000 0
Q ss_pred HHhHHHHHHHHhcCCCcEEEECCCc----hHHHHHHHcCCcEEEEecCchhHHHHHHHhhcccchHHHHH--HHHhhccc
Q 001939 104 KSILKDEVEWLNSIKADLVVSDVVP----VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVW--QIAEDYSH 177 (993)
Q Consensus 104 ~~~l~~~~~~L~~~kPDlVVsD~~~----~a~laA~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~--~l~~~y~~ 177 (993)
........+++.+||+|+.+.++ .+..+++..++|++...+..|. .+..+.+........... .....+..
T Consensus 72 --~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (374)
T cd03817 72 --IPRALIIILKELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYE-DYTHYVPLGRLLARAVVRRKLSRRFYNR 148 (374)
T ss_pred --HHHHHHHHHhhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHH-HHHHHHhcccchhHHHHHHHHHHHHhhh
Confidence 11222345788999999987632 2344566789998875333222 111111110000011111 11122234
Q ss_pred cceeeecCCCC-----CCCCCCceeecCc--cccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCCh--h-hHHH---hh
Q 001939 178 CEFLIRLPGYC-----PMPAFRDVIDVPL--VVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAG--W-KLKE---EY 243 (993)
Q Consensus 178 ~d~ll~~p~~~-----~~p~~~~v~~vp~--~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~-~ll~---~l 243 (993)
++.++...... .......+..+|. .... ....+...++.++.. +.+.+++..|+.... . .+++ .+
T Consensus 149 ~d~i~~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~G~~~~~k~~~~l~~~~~~~ 227 (374)
T cd03817 149 CDAVIAPSEKIADLLREYGVKRPIEVIPTGIDLDRFEPVDGDDERRKLGIP-EDEPVLLYVGRLAKEKNIDFLIRAFARL 227 (374)
T ss_pred CCEEEeccHHHHHHHHhcCCCCceEEcCCccchhccCccchhHHHHhcCCC-CCCeEEEEEeeeecccCHHHHHHHHHHH
Confidence 44444321110 0000011222222 1111 112223334455554 345566777876542 2 2232 22
Q ss_pred CC--CCcEEEEeCCCCC-----------CCCCCeEECCCCC--CHHHHHhhcCEEEecC----ChhHHHHHHHcCCcEEE
Q 001939 244 LP--SGWKCLVCGASDS-----------QLPPNFIKLPKDA--YTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVF 304 (993)
Q Consensus 244 ~~--~~~~~vv~G~~~~-----------~l~~nv~~~~~~~--~~pdlL~~adl~It~~----G~~Tv~Eal~~GvP~l~ 304 (993)
.. +++.++++|.... .+.+|+.+.++.+ .++++|+.||++|..+ ...++.||+++|+|+|+
T Consensus 228 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~ 307 (374)
T cd03817 228 LKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVA 307 (374)
T ss_pred HHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEE
Confidence 21 5677888886542 1467899998874 5678999999999643 34689999999999999
Q ss_pred EeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCC
Q 001939 305 VRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (993)
Q Consensus 305 ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (993)
.+.... ++.++..+.|..++..+. .+.++|.++++++.
T Consensus 308 ~~~~~~------~~~i~~~~~g~~~~~~~~---~~~~~i~~l~~~~~ 345 (374)
T cd03817 308 VDAPGL------PDLVADGENGFLFPPGDE---ALAEALLRLLQDPE 345 (374)
T ss_pred eCCCCh------hhheecCceeEEeCCCCH---HHHHHHHHHHhChH
Confidence 874433 344666678888876543 88999999998874
No 101
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.06 E-value=3.4e-08 Score=112.37 Aligned_cols=129 Identities=20% Similarity=0.238 Sum_probs=87.6
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCC--h-hhHHHh---hC--CCCcEEEEeCCCCCC-----------CCCCeEECCCCC
Q 001939 211 KEVRKELGIEDDVKLLILNFGGQPA--G-WKLKEE---YL--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDA 271 (993)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~G~~~~--~-~~ll~~---l~--~~~~~~vv~G~~~~~-----------l~~nv~~~~~~~ 271 (993)
..+++.+++++++ .++++.|+... + ..+++. +. .+++.++++|..... +.+|+++.++.+
T Consensus 176 ~~~~~~~~~~~~~-~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~ 254 (360)
T cd04951 176 LKIRNALGVKNDT-FVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRD 254 (360)
T ss_pred HHHHHHcCcCCCC-EEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccc
Confidence 3466667775444 56677776543 2 223332 22 246788888865421 357899999998
Q ss_pred CHHHHHhhcCEEEecCC----hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHH
Q 001939 272 YTPDFMAASDCMLGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (993)
Q Consensus 272 ~~pdlL~~adl~It~~G----~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll 347 (993)
+++++|..||++|..+. .+++.||+++|+|+|+...+.. .+.++. .|..+...+ .+.+.++|.+++
T Consensus 255 ~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~------~e~i~~--~g~~~~~~~--~~~~~~~i~~ll 324 (360)
T cd04951 255 DIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGV------REVVGD--SGLIVPISD--PEALANKIDEIL 324 (360)
T ss_pred cHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCCh------hhEecC--CceEeCCCC--HHHHHHHHHHHH
Confidence 99999999999998653 5789999999999999764333 333444 344555544 578999999998
Q ss_pred hCC
Q 001939 348 SLK 350 (993)
Q Consensus 348 ~~~ 350 (993)
+++
T Consensus 325 ~~~ 327 (360)
T cd04951 325 KMS 327 (360)
T ss_pred hCC
Confidence 554
No 102
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.06 E-value=3.3e-08 Score=110.57 Aligned_cols=120 Identities=18% Similarity=0.139 Sum_probs=84.2
Q ss_pred CcEEEEEcCCCCCh--h-hHHH---hhC--CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCEE
Q 001939 223 VKLLILNFGGQPAG--W-KLKE---EYL--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDCM 283 (993)
Q Consensus 223 ~~~Vlvs~G~~~~~--~-~ll~---~l~--~~~~~~vv~G~~~~~-----------l~~nv~~~~~~~~~pdlL~~adl~ 283 (993)
.+.++++.|+.... . .+++ .+. .+++.++++|..... +++++++.++.+.++++|..||++
T Consensus 177 ~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~ 256 (348)
T cd03820 177 KSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIF 256 (348)
T ss_pred CCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEE
Confidence 34456677765542 2 2232 232 356778888865431 367889988878899999999999
Q ss_pred EecCC----hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcC-cEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 284 LGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQ-GGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 284 It~~G----~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G-~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
|..+. .+++.||+++|+|+|+.+.....+ .+...+ .|..++..+ .+.+.++|.++++++
T Consensus 257 i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~------~~~~~~~~g~~~~~~~--~~~~~~~i~~ll~~~ 320 (348)
T cd03820 257 VLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS------EIIEDGVNGLLVPNGD--VEALAEALLRLMEDE 320 (348)
T ss_pred EeCccccccCHHHHHHHHcCCCEEEecCCCchH------hhhccCcceEEeCCCC--HHHHHHHHHHHHcCH
Confidence 97652 468999999999999976433322 244455 888887655 578999999999876
No 103
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.04 E-value=4.2e-08 Score=113.01 Aligned_cols=295 Identities=16% Similarity=0.115 Sum_probs=157.7
Q ss_pred cEEEEEecCCCCcccH-HHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHH
Q 001939 15 HLVFAYYVTGHGFGHA-TRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLE 93 (993)
Q Consensus 15 ~~~Il~~v~g~G~GH~-~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 93 (993)
|.+|++++.+.+.|.+ .-.+.|++.|.+.||++++++......+........+.+... .. .. ..
T Consensus 1 ~~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~----~~---~~--~~------ 65 (374)
T TIGR03088 1 RPLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKRIQRPDVAFYAL----HK---QP--GK------ 65 (374)
T ss_pred CceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCChhHHHHHhcCceEEEe----CC---CC--CC------
Confidence 3567777877775655 555699999999999998886432111221111111222211 00 00 00
Q ss_pred HHHHHhhccHHHhHHHHHHHHhcCCCcEEEECCC--chHHHHHHHcCCcEEEEecCchhHH-H-HHHHhhcccchHHHHH
Q 001939 94 KYSETAVAPRKSILKDEVEWLNSIKADLVVSDVV--PVACRAAADAGIRSVCVTNFSWDFI-Y-AEYVMAAGHHHRSIVW 169 (993)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~--~~a~laA~~~gIP~V~i~~~~~~~~-~-~~y~~~~~~~~~~i~~ 169 (993)
.+ .......+++++.+||+|+++.. ..+.+++...++|...++...|... . ...+. .. ...
T Consensus 66 ~~---------~~~~~l~~~l~~~~~Divh~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~-----~~-~~~ 130 (374)
T TIGR03088 66 DV---------AVYPQLYRLLRQLRPDIVHTRNLAALEAQLPAALAGVPARIHGEHGRDVFDLDGSNWK-----YR-WLR 130 (374)
T ss_pred Ch---------HHHHHHHHHHHHhCCCEEEEcchhHHHHHHHHHhcCCCeEEEeecCcccccchhhHHH-----HH-HHH
Confidence 00 01223456788999999998752 2334556777899755543332100 0 00000 00 000
Q ss_pred HHHhhccccceeeecCCC--------CCCC-CCCceeecCcccccCCc---ChHHHHHHhCCCCCCcEEEEEcCCCCCh-
Q 001939 170 QIAEDYSHCEFLIRLPGY--------CPMP-AFRDVIDVPLVVRRLHK---SRKEVRKELGIEDDVKLLILNFGGQPAG- 236 (993)
Q Consensus 170 ~l~~~y~~~d~ll~~p~~--------~~~p-~~~~v~~vp~~~~~~~~---~~~~~r~~l~~~~~~~~Vlvs~G~~~~~- 236 (993)
.+.. ..++.++..... ...+ ....+.+.|+......+ .+...++.... .+.+.++++.|.....
T Consensus 131 ~~~~--~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~vGrl~~~K 207 (374)
T TIGR03088 131 RLYR--PLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFF-ADESVVVGTVGRLQAVK 207 (374)
T ss_pred HHHH--hcCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHhhcC-CCCCeEEEEEecCCccc
Confidence 0000 001111111100 0001 11123334443221111 11122222222 3456678888876652
Q ss_pred -h-hHHHh---hC---C---CCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCEEEec----CChh
Q 001939 237 -W-KLKEE---YL---P---SGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDCMLGK----IGYG 290 (993)
Q Consensus 237 -~-~ll~~---l~---~---~~~~~vv~G~~~~~-----------l~~nv~~~~~~~~~pdlL~~adl~It~----~G~~ 290 (993)
. .+++. +. + +++.++++|.+... +..++.+.++.++++++|+.+|++|.. +-..
T Consensus 208 g~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~~Eg~~~ 287 (374)
T TIGR03088 208 DQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSLAEGISN 287 (374)
T ss_pred CHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccccccCch
Confidence 2 22232 21 1 25788888865421 356788888888999999999999953 2346
Q ss_pred HHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 291 TVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 291 Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
++.|||++|+|+|+.+..+. .+.++....|..++..+ ++.|.++|.++++++
T Consensus 288 ~~lEAma~G~Pvv~s~~~g~------~e~i~~~~~g~~~~~~d--~~~la~~i~~l~~~~ 339 (374)
T TIGR03088 288 TILEAMASGLPVIATAVGGN------PELVQHGVTGALVPPGD--AVALARALQPYVSDP 339 (374)
T ss_pred HHHHHHHcCCCEEEcCCCCc------HHHhcCCCceEEeCCCC--HHHHHHHHHHHHhCH
Confidence 89999999999999875433 33455566788887655 478999999998766
No 104
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.04 E-value=6.5e-08 Score=108.63 Aligned_cols=121 Identities=17% Similarity=0.081 Sum_probs=87.3
Q ss_pred CCcEEEEEcCCCCCh--h-hHHH---hhC--CCCcEEEEeCCCCCC------------CCCCeEECCCCCCHHHHHhhcC
Q 001939 222 DVKLLILNFGGQPAG--W-KLKE---EYL--PSGWKCLVCGASDSQ------------LPPNFIKLPKDAYTPDFMAASD 281 (993)
Q Consensus 222 ~~~~Vlvs~G~~~~~--~-~ll~---~l~--~~~~~~vv~G~~~~~------------l~~nv~~~~~~~~~pdlL~~ad 281 (993)
+.+.+++..|+.... . .+++ .+. .+++.++++|..... ..++|++.++.+.+.++|..||
T Consensus 186 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 265 (359)
T cd03808 186 EDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAAD 265 (359)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhcc
Confidence 345677788876542 2 2222 232 356788888876532 2467999998888999999999
Q ss_pred EEEecCC----hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 282 CMLGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 282 l~It~~G----~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
++|..+. .+++.||+++|+|+|+.+.+... +.+++.+.|..++..+ ++.|.++|.+++.++
T Consensus 266 i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~------~~i~~~~~g~~~~~~~--~~~~~~~i~~l~~~~ 330 (359)
T cd03808 266 VFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCR------EAVIDGVNGFLVPPGD--AEALADAIERLIEDP 330 (359)
T ss_pred EEEecCcccCcchHHHHHHHcCCCEEEecCCCch------hhhhcCcceEEECCCC--HHHHHHHHHHHHhCH
Confidence 9997553 46899999999999998754433 3466677888887654 578999999988776
No 105
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.03 E-value=5.6e-08 Score=110.53 Aligned_cols=121 Identities=18% Similarity=0.119 Sum_probs=83.6
Q ss_pred CCcEEEEEcCCCCCh--h-hHHH---hhCC-CCcEEEEeCCCCCC----------CCCCeEECCCCC--CHHHHHhhcCE
Q 001939 222 DVKLLILNFGGQPAG--W-KLKE---EYLP-SGWKCLVCGASDSQ----------LPPNFIKLPKDA--YTPDFMAASDC 282 (993)
Q Consensus 222 ~~~~Vlvs~G~~~~~--~-~ll~---~l~~-~~~~~vv~G~~~~~----------l~~nv~~~~~~~--~~pdlL~~adl 282 (993)
+.+.+++..|+.... . .+++ .+.. +++.++++|..... ..+|+.+.++.+ .+.++|..||+
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di 297 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV 297 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe
Confidence 445677778876542 2 2222 2222 36778888865431 247899988774 56689999999
Q ss_pred EEecCC---------hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 283 MLGKIG---------YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 283 ~It~~G---------~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
+|.... .+++.||+++|+|+|+.+.....|. +...+.|..++..+ .+.+.++|.+++.++
T Consensus 298 ~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~------~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~ 366 (394)
T cd03794 298 GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL------VEEAGAGLVVPPGD--PEALAAAILELLDDP 366 (394)
T ss_pred eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh------hccCCcceEeCCCC--HHHHHHHHHHHHhCh
Confidence 996432 2357999999999999986544433 44447788887654 578999999999776
No 106
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=99.02 E-value=1.8e-08 Score=108.80 Aligned_cols=112 Identities=21% Similarity=0.260 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCC
Q 001939 611 AYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCG 690 (993)
Q Consensus 611 ~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G 690 (993)
|.++.+...+.+..+.. .|++|.|+.+||+|+|||.=+|=+.+++.+|+++++.+++.+||+.++.++ |
T Consensus 67 NLv~rAa~ll~~~~~~~--~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~L-----G---- 135 (289)
T COG1947 67 NLVYRAAELLRKRTGIA--GGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRL-----G---- 135 (289)
T ss_pred hHHHHHHHHHHHHhCCC--CCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh-----C----
Confidence 88888888777777743 689999999999999999888888899999999999999999999999763 3
Q ss_pred cchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCCCcccc
Q 001939 691 VMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSV 738 (993)
Q Consensus 691 ~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv~~~~ 738 (993)
.|--.+++||. + +...+. +..++++-++...++++..++.-+|
T Consensus 136 -aDVPffl~g~t--A-~a~G~G-E~l~~~~~~~~~~~vl~~P~v~vsT 178 (289)
T COG1947 136 -ADVPFFLSGGT--A-FAEGRG-EKLEPLEDPPEKWYVLAKPGVGVST 178 (289)
T ss_pred -CCcCeeeeCCc--e-EEEEcc-ceeeECCCCCCceEEEEeCCCCCCh
Confidence 26656777774 2 333333 3335555345666777776665554
No 107
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.02 E-value=5.3e-08 Score=110.85 Aligned_cols=129 Identities=23% Similarity=0.189 Sum_probs=89.2
Q ss_pred HHHhCCCCCCcEEEEEcCCCCCh--hh-HHH---hhC--CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHH
Q 001939 214 RKELGIEDDVKLLILNFGGQPAG--WK-LKE---EYL--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTP 274 (993)
Q Consensus 214 r~~l~~~~~~~~Vlvs~G~~~~~--~~-ll~---~l~--~~~~~~vv~G~~~~~-----------l~~nv~~~~~~~~~p 274 (993)
++..+.. +.+.++++.|+.... .+ +++ .+. .+++.++++|..+.. +++++++.++.+.++
T Consensus 183 ~~~~~~~-~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 261 (358)
T cd03812 183 RRELGIL-EDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVP 261 (358)
T ss_pred HHHcCCC-CCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHH
Confidence 3444444 445667788876542 22 222 232 256788888876531 467899999888899
Q ss_pred HHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 275 DFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 275 dlL~~adl~It~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
+++..||++|..+ -.++++|||++|+|+|+...++..|. ++. +.+...... +++.|.++|.++++++
T Consensus 262 ~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~------i~~-~~~~~~~~~--~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 262 ELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEVD------LTD-LVKFLSLDE--SPEIWAEEILKLKSED 332 (358)
T ss_pred HHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhhh------hcc-CccEEeCCC--CHHHHHHHHHHHHhCc
Confidence 9999999999753 34789999999999999875544333 444 555554433 3689999999999988
Q ss_pred CC
Q 001939 351 PC 352 (993)
Q Consensus 351 ~~ 352 (993)
..
T Consensus 333 ~~ 334 (358)
T cd03812 333 RR 334 (358)
T ss_pred ch
Confidence 53
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.00 E-value=7.5e-08 Score=117.81 Aligned_cols=122 Identities=9% Similarity=-0.003 Sum_probs=86.6
Q ss_pred CcEEEEEcCCCCC--hh-hHHHh---hC--CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCEE
Q 001939 223 VKLLILNFGGQPA--GW-KLKEE---YL--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDCM 283 (993)
Q Consensus 223 ~~~Vlvs~G~~~~--~~-~ll~~---l~--~~~~~~vv~G~~~~~-----------l~~nv~~~~~~~~~pdlL~~adl~ 283 (993)
...++++.|.... +. .+++. +. .+++.++++|..... +.++|++.|+.++++.+|..+|+|
T Consensus 516 ~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~ 595 (694)
T PRK15179 516 ARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAF 595 (694)
T ss_pred CCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEE
Confidence 3446667776543 22 23332 21 256888888875421 468899999999999999999999
Q ss_pred EecC---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 284 LGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 284 It~~---G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
|..+ | .+++.|||++|+|+|+....+ +.+.++....|+.+...+.+++.|.++|.+++.+.
T Consensus 596 VlpS~~Egfp~vlLEAMA~G~PVVat~~gG------~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l 660 (694)
T PRK15179 596 LLLSRFEGLPNVLIEAQFSGVPVVTTLAGG------AGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMC 660 (694)
T ss_pred EeccccccchHHHHHHHHcCCeEEEECCCC------hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhCh
Confidence 9632 3 358999999999999987433 23445555679999877766678888888887654
No 109
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.99 E-value=9.1e-08 Score=107.90 Aligned_cols=129 Identities=20% Similarity=0.197 Sum_probs=89.2
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCCh--h-hHHHh---hC--CCCcEEEEeCCCCCC------------CCCCeEECCCC
Q 001939 211 KEVRKELGIEDDVKLLILNFGGQPAG--W-KLKEE---YL--PSGWKCLVCGASDSQ------------LPPNFIKLPKD 270 (993)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~G~~~~~--~-~ll~~---l~--~~~~~~vv~G~~~~~------------l~~nv~~~~~~ 270 (993)
...++.++++++ +.+++++|+.... . .+++. +. .+++.++++|..... +++++.+.++.
T Consensus 181 ~~~~~~~~~~~~-~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~ 259 (365)
T cd03807 181 ARLREELGLPED-TFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGER 259 (365)
T ss_pred HHHHHhcCCCCC-CeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEcccc
Confidence 345567777644 4566777876542 2 23332 22 246778888875421 35688888888
Q ss_pred CCHHHHHhhcCEEEecCC----hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 001939 271 AYTPDFMAASDCMLGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (993)
Q Consensus 271 ~~~pdlL~~adl~It~~G----~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (993)
++++++|+.||++|..+. .+++.||+++|+|+|+.+.+.. .+.+.+ .|..+...+ .+.+.++|.++
T Consensus 260 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~------~e~~~~--~g~~~~~~~--~~~l~~~i~~l 329 (365)
T cd03807 260 SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGDN------AELVGD--TGFLVPPGD--PEALAEAIEAL 329 (365)
T ss_pred ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCCh------HHHhhc--CCEEeCCCC--HHHHHHHHHHH
Confidence 889999999999997543 3689999999999999764432 333444 566666554 57899999999
Q ss_pred HhCC
Q 001939 347 ISLK 350 (993)
Q Consensus 347 l~~~ 350 (993)
++++
T Consensus 330 ~~~~ 333 (365)
T cd03807 330 LADP 333 (365)
T ss_pred HhCh
Confidence 9876
No 110
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.97 E-value=1.3e-07 Score=107.65 Aligned_cols=278 Identities=17% Similarity=0.108 Sum_probs=148.6
Q ss_pred cccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHHHHHhhccHHHh
Q 001939 27 FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSI 106 (993)
Q Consensus 27 ~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (993)
.|--..+..++++|.++||+|++++..... .......++.+... ... .... ...+ ..
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~--~~~~~~~~~~~~~~----~~~-----~~~~---~~~~---------~~ 66 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGRL--VAELEAEGSRHIKL----PFI-----SKNP---LRIL---------LN 66 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCch--HHHHHhcCCeEEEc----ccc-----ccch---hhhH---------HH
Confidence 466677779999999999999998764321 11111111111111 000 0000 0000 01
Q ss_pred HHHHHHHHhcCCCcEEEECCC---chHHHHHHHcCCcEEEEecCchh-H-HHHHHHhhccc---chHHHHHHHHhhcccc
Q 001939 107 LKDEVEWLNSIKADLVVSDVV---PVACRAAADAGIRSVCVTNFSWD-F-IYAEYVMAAGH---HHRSIVWQIAEDYSHC 178 (993)
Q Consensus 107 l~~~~~~L~~~kPDlVVsD~~---~~a~laA~~~gIP~V~i~~~~~~-~-~~~~y~~~~~~---~~~~i~~~l~~~y~~~ 178 (993)
......++++.+||+|+.+.. ..+.++++..++|++...+-.|. . .+......... ..+...+.+...+..
T Consensus 67 ~~~l~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~- 145 (355)
T cd03819 67 VARLRRLIREEKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYSVNFRYNAIMARGDRVIAVSNFIADHIRENYGV- 145 (355)
T ss_pred HHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchhhHHHHHHHHHhcCEEEEeCHHHHHHHHHhcCC-
Confidence 223356678899999998763 23445567779998875332221 1 11111000000 001111111111110
Q ss_pred ceeeecCCCCCCCCCCceeecCccccc--C-CcChH---HHHHHhCCCCCCcEEEEEcCCCCCh--h-hHHH---hhCC-
Q 001939 179 EFLIRLPGYCPMPAFRDVIDVPLVVRR--L-HKSRK---EVRKELGIEDDVKLLILNFGGQPAG--W-KLKE---EYLP- 245 (993)
Q Consensus 179 d~ll~~p~~~~~p~~~~v~~vp~~~~~--~-~~~~~---~~r~~l~~~~~~~~Vlvs~G~~~~~--~-~ll~---~l~~- 245 (993)
+ +....+.+.|+.... + ...+. .+++.++.++ ...++++.|+.... . .+++ .+..
T Consensus 146 ----------~-~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~ 213 (355)
T cd03819 146 ----------D-PDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPK-GKPVILLPGRLTRWKGQEVFIEALARLKKD 213 (355)
T ss_pred ----------C-hhhEEEecCCccccccCccccchHHHHHHHHHcCCCC-CceEEEEeeccccccCHHHHHHHHHHHHhc
Confidence 0 001112222222111 1 11111 1455566543 44567777775542 2 2222 2322
Q ss_pred -CCcEEEEeCCCCCC---------------CCCCeEECCCCCCHHHHHhhcCEEEecC-----ChhHHHHHHHcCCcEEE
Q 001939 246 -SGWKCLVCGASDSQ---------------LPPNFIKLPKDAYTPDFMAASDCMLGKI-----GYGTVSEALAYKLPFVF 304 (993)
Q Consensus 246 -~~~~~vv~G~~~~~---------------l~~nv~~~~~~~~~pdlL~~adl~It~~-----G~~Tv~Eal~~GvP~l~ 304 (993)
+++.++++|..... +.+||++.|+.++++++|+.||++|..+ ..+++.||+++|+|+|+
T Consensus 214 ~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~ 293 (355)
T cd03819 214 DPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIA 293 (355)
T ss_pred CCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEE
Confidence 56788888865421 3568999999888999999999999755 23699999999999999
Q ss_pred EeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHh
Q 001939 305 VRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAIS 348 (993)
Q Consensus 305 ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~ 348 (993)
...... .+.+...+.|..++..+ .+.+.++|.+++.
T Consensus 294 ~~~~~~------~e~i~~~~~g~~~~~~~--~~~l~~~i~~~~~ 329 (355)
T cd03819 294 SDHGGA------RETVRPGETGLLVPPGD--AEALAQALDQILS 329 (355)
T ss_pred cCCCCc------HHHHhCCCceEEeCCCC--HHHHHHHHHHHHh
Confidence 764332 33455556788887655 5788889876654
No 111
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.97 E-value=4e-07 Score=106.52 Aligned_cols=131 Identities=19% Similarity=0.242 Sum_probs=87.6
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCCh--h-hHHHh---hC-CCCcEEEEeCCCCCC---------C-CCCeEECCCCC--
Q 001939 211 KEVRKELGIEDDVKLLILNFGGQPAG--W-KLKEE---YL-PSGWKCLVCGASDSQ---------L-PPNFIKLPKDA-- 271 (993)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~G~~~~~--~-~ll~~---l~-~~~~~~vv~G~~~~~---------l-~~nv~~~~~~~-- 271 (993)
..+++.++++++ +.++++.|+.... . .+++. +. .++++++++|..... . .+||++.|+.+
T Consensus 217 ~~~~~~~~~~~~-~~~i~~~G~l~~~kg~~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~ 295 (412)
T PRK10307 217 DALRAQLGLPDG-KKIVLYSGNIGEKQGLELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYD 295 (412)
T ss_pred HHHHHHcCCCCC-CEEEEEcCccccccCHHHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHH
Confidence 456777887644 4566778877653 2 23332 21 245788888876421 1 24899999874
Q ss_pred CHHHHHhhcCEEEec--C-C-----hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHH
Q 001939 272 YTPDFMAASDCMLGK--I-G-----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYL 343 (993)
Q Consensus 272 ~~pdlL~~adl~It~--~-G-----~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l 343 (993)
.++++|+.||++|.. . + .+.+.|+|++|+|+|+...++ .+ ..+.+. +.|+.++..+ ++.|.++|
T Consensus 296 ~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g-~~---~~~~i~--~~G~~~~~~d--~~~la~~i 367 (412)
T PRK10307 296 RLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPG-TE---LGQLVE--GIGVCVEPES--VEALVAAI 367 (412)
T ss_pred HHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCC-ch---HHHHHh--CCcEEeCCCC--HHHHHHHH
Confidence 577899999998852 2 2 134789999999999987433 22 122233 6888887665 57899999
Q ss_pred HHHHhCC
Q 001939 344 ERAISLK 350 (993)
Q Consensus 344 ~~ll~~~ 350 (993)
.++++++
T Consensus 368 ~~l~~~~ 374 (412)
T PRK10307 368 AALARQA 374 (412)
T ss_pred HHHHhCH
Confidence 9998776
No 112
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=1.3e-07 Score=104.93 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=71.6
Q ss_pred CCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHH----HHHHHHHHHhccccCCCCCcchhhHhhccccceE
Q 001939 630 DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPR----DLALLCQKVENHIVGAPCGVMDQMASACGEANKL 705 (993)
Q Consensus 630 ~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~----el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~ 705 (993)
.||+|...|++|-|+|||.|+-+....++|+..+.|.....+ .+.....+.|+. .-+-.|++||.-+++-|..+.
T Consensus 690 ~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQi-lTTGGGWQDQ~G~im~GIK~g 768 (948)
T KOG4644|consen 690 CGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQI-LTTGGGWQDQCGAIMEGIKKG 768 (948)
T ss_pred CceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHhHHHHHHHHHHHHHH-hhcCCchhhhccchhhhhhhc
Confidence 699999999999999999999998888888888887754443 334444557764 567789999998888774331
Q ss_pred EEEeecCccc-eeeecCCC------CeEEEEEeCCCc
Q 001939 706 LAMVCQPAEL-LGVVEIPS------HIRFWGIDSGIR 735 (993)
Q Consensus 706 ~~i~~~~~~~-~~~v~~p~------~~~~ll~dSgv~ 735 (993)
-..-..+..+ .+.+.+|. +-++++++||..
T Consensus 769 r~rael~~~ie~eeiTipe~f~ekL~dhLLLVYTGKT 805 (948)
T KOG4644|consen 769 RCRAELNHGIEHEEITIPEEFREKLEDHLLLVYTGKT 805 (948)
T ss_pred cchhhccCCceeeeecCCHHHHHHHhhcEEEEEeCch
Confidence 1100112221 14556663 346788888754
No 113
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=98.95 E-value=1e-08 Score=105.38 Aligned_cols=249 Identities=17% Similarity=0.209 Sum_probs=149.8
Q ss_pred CCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhh-HhhccccceEEEE
Q 001939 630 DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQM-ASACGEANKLLAM 708 (993)
Q Consensus 630 ~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~-~~~~Gg~~~~~~i 708 (993)
.+-++++.+-||.|+|+|||++..++.....++..++.+++......+..+|+|. |+. ++.+||+--..+.
T Consensus 93 ~~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhp--------dn~~a~mmGgf~GSflr 164 (355)
T KOG1537|consen 93 ITTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHP--------DNAVAEMMGGFLGSFLR 164 (355)
T ss_pred cceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhCh--------HHHHHHHHhhHHHHHHH
Confidence 4568899999999999999999999999999999988999988888888888873 333 4556653211111
Q ss_pred eecCccc-eeeecC----CC-CeEEEEEeCCCccccCC-CCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCcc
Q 001939 709 VCQPAEL-LGVVEI----PS-HIRFWGIDSGIRHSVGG-ADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPE 781 (993)
Q Consensus 709 ~~~~~~~-~~~v~~----p~-~~~~ll~dSgv~~~~~~-~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~ 781 (993)
+--+.+. ...++. |. .--|+++-+--|-+.+. -.|-- -+-+..++ +. .+
T Consensus 165 ~l~e~E~~~~~~~ad~ilp~~~gg~~li~~lpP~dlg~~~r~pw--------~~~lk~i~---vi-----------P~-- 220 (355)
T KOG1537|consen 165 ALLESEAKVSGYHADNILPAIMGGFVLIRNLPPLDLGKPLRFPW--------DKDLKFIL---VI-----------PD-- 220 (355)
T ss_pred HhCHhhhhhcCCCHHHhcccccCCeeeecCCCcccccccccCCC--------CccceEEE---Ee-----------cc--
Confidence 1000000 000110 10 11133332222222211 00000 00000000 00 00
Q ss_pred chhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHH
Q 001939 782 VDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAF 861 (993)
Q Consensus 782 ~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~ 861 (993)
. +++..++ +..||..+ ...|.+.+.+|....
T Consensus 221 ---F-------------el~T~k~----R~vLPt~y-----------------------------p~~d~V~NlqrlA~L 251 (355)
T KOG1537|consen 221 ---F-------------ELPTKKM----RAVLPTEY-----------------------------PMVDHVWNLQRLAAL 251 (355)
T ss_pred ---c-------------cccchhh----hhhcCccc-----------------------------cceeeeecHHHHHHH
Confidence 0 0011111 13455432 356777888888888
Q ss_pred HHHHHccCChhHHHHHHHHHHH-hhhhhhhcCCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEcc
Q 001939 862 KALLTAAASDDQLTSLGELLYQ-CHYSYSACGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGR 940 (993)
Q Consensus 862 ~~al~~~~~~~~l~~lG~Lm~~-sH~slr~~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~ 940 (993)
..||..+. .+....-.+|.+ -|+.||.- ..|+++.+.+.+... ..+|++|.-++||| .|+.++..
T Consensus 252 ttAl~~~p--~n~~L~y~~m~DkvhqPyRa~--LIPGl~~il~~~~p~--------t~pGl~GiclSGAG--PT~lAlat 317 (355)
T KOG1537|consen 252 TTALLEGP--DNVMLGYALMSDKVHQPYRAP--LIPGLEAILKAALPA--------TYPGLFGICLSGAG--PTALALAT 317 (355)
T ss_pred HHHHhcCC--CchhhhhhhhhccccCccccc--cCccHHHHHHhhCcc--------cCCceeeEEecCCC--CeeEEEec
Confidence 88877652 234445567776 69999995 589999998877652 13799999999999 99998887
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCcEEee--cCCCCcc
Q 001939 941 NSLRSSEQVLEIQQRYKDATGYLPLIIEG--SSPGAGK 976 (993)
Q Consensus 941 ~~~~~~~~~~~i~~~y~~~~g~~~~~~~~--~~~G~~~ 976 (993)
++. +++.+++.++|. +.|++..+-.. .-+|+++
T Consensus 318 enf--~eI~~~mv~~F~-K~G~kcs~~~l~pa~Dga~v 352 (355)
T KOG1537|consen 318 ENF--QEIGEKMVEAFW-KVGHKCSVASLKPALDGAGV 352 (355)
T ss_pred CcH--HHHHHHHHHHHH-hhCceeeeEeeccccCCcce
Confidence 766 488899999997 67888776554 2455543
No 114
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.93 E-value=2.2e-07 Score=106.89 Aligned_cols=238 Identities=16% Similarity=0.050 Sum_probs=130.7
Q ss_pred HHHHHHHHhcCCCcEEEECCC----chHHHHHHHcCCcEEEEec----C-c---hh-HHHHHHHhhcccchHHHHHHHHh
Q 001939 107 LKDEVEWLNSIKADLVVSDVV----PVACRAAADAGIRSVCVTN----F-S---WD-FIYAEYVMAAGHHHRSIVWQIAE 173 (993)
Q Consensus 107 l~~~~~~L~~~kPDlVVsD~~----~~a~laA~~~gIP~V~i~~----~-~---~~-~~~~~y~~~~~~~~~~i~~~l~~ 173 (993)
+....+++++++||+|+++.. .++.++|..++||++.+.. + . |. ...+. +...+..
T Consensus 75 ~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~~s~~~~~~~~~~~~r~-----------~~~~~ad 143 (365)
T TIGR00236 75 LEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGLRTGDRYSPMPEEINRQ-----------LTGHIAD 143 (365)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCCCcCCCCCCCccHHHHH-----------HHHHHHH
Confidence 445567889999999997642 4467788899999986511 1 0 11 00010 0111111
Q ss_pred hc-cc----cceeeecCCCCCCCCCCceeecCcccc---c-CCcChHHHHHHhCCCCCCcEEEEEcCCCC---Ch-hhHH
Q 001939 174 DY-SH----CEFLIRLPGYCPMPAFRDVIDVPLVVR---R-LHKSRKEVRKELGIEDDVKLLILNFGGQP---AG-WKLK 240 (993)
Q Consensus 174 ~y-~~----~d~ll~~p~~~~~p~~~~v~~vp~~~~---~-~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~---~~-~~ll 240 (993)
.+ .. .+.+... ...+....+++.|.... . ....+.++++.++ .+.++++++++... .+ ..++
T Consensus 144 ~~~~~s~~~~~~l~~~---G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~--~~~~~vl~~~hr~~~~~k~~~~ll 218 (365)
T TIGR00236 144 LHFAPTEQAKDNLLRE---NVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFG--EDKRYILLTLHRRENVGEPLENIF 218 (365)
T ss_pred hccCCCHHHHHHHHHc---CCCcccEEEeCChHHHHHHHHHhhccchhHHHhcC--CCCCEEEEecCchhhhhhHHHHHH
Confidence 00 00 0011110 01122223444443221 1 1111334555565 24467777765322 11 1233
Q ss_pred Hh---hC--CCCcEEEEeC-CCCC---------CCCCCeEECCCCCCH--HHHHhhcCEEEecCChhHHHHHHHcCCcEE
Q 001939 241 EE---YL--PSGWKCLVCG-ASDS---------QLPPNFIKLPKDAYT--PDFMAASDCMLGKIGYGTVSEALAYKLPFV 303 (993)
Q Consensus 241 ~~---l~--~~~~~~vv~G-~~~~---------~l~~nv~~~~~~~~~--pdlL~~adl~It~~G~~Tv~Eal~~GvP~l 303 (993)
+. +. .+++.+++++ ++.. ...+|+++++...+. ..+|+.||++|+.+| +.+.||+++|+|+|
T Consensus 219 ~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~Sg-~~~~EA~a~g~PvI 297 (365)
T TIGR00236 219 KAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDSG-GVQEEAPSLGKPVL 297 (365)
T ss_pred HHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECCh-hHHHHHHHcCCCEE
Confidence 32 22 2356666653 3221 024689988776543 478899999999887 45799999999999
Q ss_pred EEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc---------CCCCHHHHHHHHHHHH
Q 001939 304 FVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQET 370 (993)
Q Consensus 304 ~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~ga~~~a~~i~~~ 370 (993)
.++.. .+++ .+...|.++.+. . +++.+.++|.++++++..+. ..++.+.++++.+.+|
T Consensus 298 ~~~~~--~~~~----e~~~~g~~~lv~-~--d~~~i~~ai~~ll~~~~~~~~~~~~~~~~g~~~a~~ri~~~l~~~ 364 (365)
T TIGR00236 298 VLRDT--TERP----ETVEAGTNKLVG-T--DKENITKAAKRLLTDPDEYKKMSNASNPYGDGEASERIVEELLNH 364 (365)
T ss_pred ECCCC--CCCh----HHHhcCceEEeC-C--CHHHHHHHHHHHHhChHHHHHhhhcCCCCcCchHHHHHHHHHHhh
Confidence 98632 2322 134467777663 2 46789999999987763211 3456677777777664
No 115
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.92 E-value=4.4e-07 Score=101.47 Aligned_cols=117 Identities=16% Similarity=0.076 Sum_probs=79.6
Q ss_pred CCcEEEEEcCCCCCh--h-hHHH---hhCC--CCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCE
Q 001939 222 DVKLLILNFGGQPAG--W-KLKE---EYLP--SGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDC 282 (993)
Q Consensus 222 ~~~~Vlvs~G~~~~~--~-~ll~---~l~~--~~~~~vv~G~~~~~-----------l~~nv~~~~~~~~~pdlL~~adl 282 (993)
+.+.++++.|+.... . .+++ .+.. +++.++++|..... +.+++.+.++.+++++++..||+
T Consensus 187 ~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~ 266 (353)
T cd03811 187 PDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADL 266 (353)
T ss_pred CCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCE
Confidence 445677788876542 2 2333 2222 36777888865421 36789999998888999999999
Q ss_pred EEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 001939 283 MLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (993)
Q Consensus 283 ~It~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (993)
+|..+ ..+++.||+++|+|+|+...+. ..+.+++...|..++..+ .+.+...++.+
T Consensus 267 ~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~------~~e~i~~~~~g~~~~~~~--~~~~~~~~~~i 326 (353)
T cd03811 267 FVLSSRYEGFPNVLLEAMALGTPVVATDCPG------PREILEDGENGLLVPVGD--EAALAAAALAL 326 (353)
T ss_pred EEeCcccCCCCcHHHHHHHhCCCEEEcCCCC------hHHHhcCCCceEEECCCC--HHHHHHHHHHH
Confidence 99643 3468999999999999976432 345577788898887655 35663334433
No 116
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.91 E-value=2.7e-07 Score=103.65 Aligned_cols=293 Identities=18% Similarity=0.047 Sum_probs=153.4
Q ss_pred CcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHHHHHhhccHHH
Q 001939 26 GFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKS 105 (993)
Q Consensus 26 G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (993)
+.|+..+...++++|.+.||+|++++.............. ... ... . ...... .... ...
T Consensus 13 ~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~---~~~--~~~--~---~~~~~~----~~~~------~~~ 72 (374)
T cd03801 13 VGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGG---IVV--VRP--P---PLLRVR----RLLL------LLL 72 (374)
T ss_pred cCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecC---cce--ecC--C---cccccc----hhHH------HHH
Confidence 4799999999999999999999999876422111110000 000 000 0 000000 0000 001
Q ss_pred hHHHHHHHHhcCCCcEEEECCCchHH---HHHHHcCCcEEEEecCchhHHHHHHHhhcccchHHHHHHHHhhccccceee
Q 001939 106 ILKDEVEWLNSIKADLVVSDVVPVAC---RAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLI 182 (993)
Q Consensus 106 ~l~~~~~~L~~~kPDlVVsD~~~~a~---laA~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~~l~~~y~~~d~ll 182 (993)
.......++++.+||+|+........ ..+...++|++...+-.+....... .. .............+..++.++
T Consensus 73 ~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~d~~i 149 (374)
T cd03801 73 LALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNE-LG--LLLKLARALERRALRRADRII 149 (374)
T ss_pred HHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccc-hh--HHHHHHHHHHHHHHHhCCEEE
Confidence 12233556788899999987633322 3567778998876322111000000 00 000000000111222233333
Q ss_pred ecCCC--------CCCC-CCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCCh---hhHHHh---hCC--
Q 001939 183 RLPGY--------CPMP-AFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YLP-- 245 (993)
Q Consensus 183 ~~p~~--------~~~p-~~~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~---~~ll~~---l~~-- 245 (993)
..... ...+ ....+.+.|+..........+.+...... ....+++.+|+.... ..+++. +..
T Consensus 150 ~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~ 228 (374)
T cd03801 150 AVSEATREELRELGGVPPEKITVIPNGVDTERFRPAPRAARRRLGIP-EDEPVILFVGRLVPRKGVDLLLEALAKLRKEY 228 (374)
T ss_pred EecHHHHHHHHhcCCCCCCcEEEecCcccccccCccchHHHhhcCCc-CCCeEEEEecchhhhcCHHHHHHHHHHHhhhc
Confidence 22110 0000 11112222222111111112223333333 344566777776542 123332 222
Q ss_pred CCcEEEEeCCCCC-----------CCCCCeEECCCC--CCHHHHHhhcCEEEec----CChhHHHHHHHcCCcEEEEeCC
Q 001939 246 SGWKCLVCGASDS-----------QLPPNFIKLPKD--AYTPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRD 308 (993)
Q Consensus 246 ~~~~~vv~G~~~~-----------~l~~nv~~~~~~--~~~pdlL~~adl~It~----~G~~Tv~Eal~~GvP~l~ip~~ 308 (993)
+++.++++|.... ..++|+.+.++. +.+.++|..||++|.. +..+++.||+++|+|+|+.+.+
T Consensus 229 ~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~ 308 (374)
T cd03801 229 PDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVG 308 (374)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCC
Confidence 3577888885432 146789999988 6678999999999953 3457899999999999998754
Q ss_pred CCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 309 YFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 309 ~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
.. .+.++..+.|..++..+ ++.+.++|.+++.++
T Consensus 309 ~~------~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~ 342 (374)
T cd03801 309 GI------PEVVEDGETGLLVPPGD--PEALAEAILRLLDDP 342 (374)
T ss_pred Ch------hHHhcCCcceEEeCCCC--HHHHHHHHHHHHcCh
Confidence 43 34466678888887655 578999999998776
No 117
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.90 E-value=3.1e-07 Score=105.38 Aligned_cols=143 Identities=19% Similarity=0.173 Sum_probs=91.4
Q ss_pred HHHhCCCCCCcEEEEEcCCCCC---h---hhHHHh---hCCCCcEEEEeCCCC--CC-------C---CCCeEECCCC--
Q 001939 214 RKELGIEDDVKLLILNFGGQPA---G---WKLKEE---YLPSGWKCLVCGASD--SQ-------L---PPNFIKLPKD-- 270 (993)
Q Consensus 214 r~~l~~~~~~~~Vlvs~G~~~~---~---~~ll~~---l~~~~~~~vv~G~~~--~~-------l---~~nv~~~~~~-- 270 (993)
++.++++ ++++|++++|+... . ..++++ +...++.++..|... .. + .+|+++.++.
T Consensus 190 ~~~~~~~-~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 268 (363)
T cd03786 190 LELLGLL-PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGY 268 (363)
T ss_pred hhhcccC-CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCH
Confidence 3456664 56778888887653 1 123333 222235555544332 11 1 4688887654
Q ss_pred CCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 271 AYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 271 ~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
.+++.+|..||+||+.+| +.+.|++++|+|+|.++. .++ ...+.+.|+++.+.. +++.+.++|.++++++
T Consensus 269 ~~~~~l~~~ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~--~~~----~~~~~~~g~~~~~~~---~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 269 LYFLLLLKNADLVLTDSG-GIQEEASFLGVPVLNLRD--RTE----RPETVESGTNVLVGT---DPEAILAAIEKLLSDE 338 (363)
T ss_pred HHHHHHHHcCcEEEEcCc-cHHhhhhhcCCCEEeeCC--CCc----cchhhheeeEEecCC---CHHHHHHHHHHHhcCc
Confidence 467889999999999999 778899999999999973 222 334667787766642 2578999999999876
Q ss_pred CCcc-------CCCCHHHHHHHHH
Q 001939 351 PCYE-------GGINGGEVAAHIL 367 (993)
Q Consensus 351 ~~~~-------~~~~ga~~~a~~i 367 (993)
.... ..++.+.++++.+
T Consensus 339 ~~~~~~~~~~~~~~~a~~~I~~~l 362 (363)
T cd03786 339 FAYSLMSINPYGDGNASERIVEIL 362 (363)
T ss_pred hhhhcCCCCCCCCCHHHHHHHHHh
Confidence 4331 3445555555443
No 118
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.89 E-value=6e-07 Score=100.71 Aligned_cols=307 Identities=17% Similarity=0.149 Sum_probs=164.1
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHH
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY 95 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 95 (993)
|+|.+-+..+ -|+.-...++++|.++||+|.+.+..... ....+..-++.+..+ |-. ... ...++
T Consensus 1 MkIwiDi~~p--~hvhfFk~~I~eL~~~GheV~it~R~~~~-~~~LL~~yg~~y~~i----G~~-----g~~---~~~Kl 65 (335)
T PF04007_consen 1 MKIWIDITHP--AHVHFFKNIIRELEKRGHEVLITARDKDE-TEELLDLYGIDYIVI----GKH-----GDS---LYGKL 65 (335)
T ss_pred CeEEEECCCc--hHHHHHHHHHHHHHhCCCEEEEEEeccch-HHHHHHHcCCCeEEE----cCC-----CCC---HHHHH
Confidence 5666666544 59999999999999999999998765321 111111112222221 111 000 11222
Q ss_pred HHHhhccHHHhHHHHHHHHhcCCCcEEEECCCchHHHHHHHcCCcEEEEecCchhHHHHHHHhhcccchHHHHHHHHhhc
Q 001939 96 SETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDY 175 (993)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~a~laA~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~~l~~~y 175 (993)
... ..+..+..+++++++||++|+...+.+..+|..+|+|+|.+.|.-+..... ++. +
T Consensus 66 ~~~-----~~R~~~l~~~~~~~~pDv~is~~s~~a~~va~~lgiP~I~f~D~e~a~~~~---------------~Lt--~ 123 (335)
T PF04007_consen 66 LES-----IERQYKLLKLIKKFKPDVAISFGSPEAARVAFGLGIPSIVFNDTEHAIAQN---------------RLT--L 123 (335)
T ss_pred HHH-----HHHHHHHHHHHHhhCCCEEEecCcHHHHHHHHHhCCCeEEEecCchhhccc---------------eee--h
Confidence 221 123445567788999999999999899999999999999986633211000 000 0
Q ss_pred cccceeeecCCCCCC------CCCCcee-ecCc--ccc--cCCcChHHHHHHhCCCCCCcEEEEEcCCCCCh--------
Q 001939 176 SHCEFLIRLPGYCPM------PAFRDVI-DVPL--VVR--RLHKSRKEVRKELGIEDDVKLLILNFGGQPAG-------- 236 (993)
Q Consensus 176 ~~~d~ll~~p~~~~~------p~~~~v~-~vp~--~~~--~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-------- 236 (993)
.-++.++ .|...+. ....+++ +-|. ... +.+++ +++.+.+|++ +.++|++=+-...+.
T Consensus 124 Pla~~i~-~P~~~~~~~~~~~G~~~~i~~y~G~~E~ayl~~F~Pd-~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i 200 (335)
T PF04007_consen 124 PLADVII-TPEAIPKEFLKRFGAKNQIRTYNGYKELAYLHPFKPD-PEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSI 200 (335)
T ss_pred hcCCeeE-CCcccCHHHHHhcCCcCCEEEECCeeeEEeecCCCCC-hhHHHHcCCC-CCCEEEEEeccccCeeecCccch
Confidence 0011111 1111100 0001122 1121 011 12233 4567788876 568888876654441
Q ss_pred -hhHHHhhCCCCcEEEEeCCCCCC--C--CCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCC
Q 001939 237 -WKLKEEYLPSGWKCLVCGASDSQ--L--PPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFN 311 (993)
Q Consensus 237 -~~ll~~l~~~~~~~vv~G~~~~~--l--~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~ 311 (993)
.++++.+...+..+++..+..++ + .-++.+.+-.-+..++|..||++||-|| +...||..+|+|.|-+- + +
T Consensus 201 ~~~ii~~L~~~~~~vV~ipr~~~~~~~~~~~~~~i~~~~vd~~~Ll~~a~l~Ig~gg-TMa~EAA~LGtPaIs~~-~--g 276 (335)
T PF04007_consen 201 LPEIIEELEKYGRNVVIIPRYEDQRELFEKYGVIIPPEPVDGLDLLYYADLVIGGGG-TMAREAALLGTPAISCF-P--G 276 (335)
T ss_pred HHHHHHHHHhhCceEEEecCCcchhhHHhccCccccCCCCCHHHHHHhcCEEEeCCc-HHHHHHHHhCCCEEEec-C--C
Confidence 13333443333333444332222 1 1123333222233489999999999555 88899999999999863 1 1
Q ss_pred ChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc--CCCCHHHHHHHHHHHH
Q 001939 312 EEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE--GGINGGEVAAHILQET 370 (993)
Q Consensus 312 EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~--~~~~ga~~~a~~i~~~ 370 (993)
+....=+++.+.|. .....+ ++++...+.+.+..+.... ...+-...+.+.|+++
T Consensus 277 ~~~~vd~~L~~~Gl--l~~~~~--~~ei~~~v~~~~~~~~~~~~~~~~d~~~~i~~~i~~~ 333 (335)
T PF04007_consen 277 KLLAVDKYLIEKGL--LYHSTD--PDEIVEYVRKNLGKRKKIREKKSEDPTDLIIEEIEEY 333 (335)
T ss_pred cchhHHHHHHHCCC--eEecCC--HHHHHHHHHHhhhcccchhhhhccCHHHHHHHHHHHh
Confidence 22233467888876 333333 4566666666554442222 2355566666666665
No 119
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.89 E-value=4.6e-07 Score=105.61 Aligned_cols=300 Identities=16% Similarity=0.087 Sum_probs=153.6
Q ss_pred cccHHHHHHHHHHHHHCCCeEEEEeCCCCccccccc-CCCceEEeeeeccCCccccCccccChHHHHHHHHHHhhccHHH
Q 001939 27 FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEI-QSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKS 105 (993)
Q Consensus 27 ~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (993)
.|.-.....|+++|.++||+|+++|........... ..+.+.+... ..+. +..... ..+..++. .
T Consensus 20 GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-----~~~~~~---~~~~~~~~----~ 85 (405)
T TIGR03449 20 GGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNV--VAGP-----YEGLDK---EDLPTQLC----A 85 (405)
T ss_pred CCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEe--cCCC-----cccCCH---HHHHHHHH----H
Confidence 577788999999999999999999865321111000 0122222221 0000 000000 01111100 0
Q ss_pred hHHHHH-HHHh--cCCCcEEEECCC---chHHHHHHHcCCcEEEEecCchhHHHHHHHhhcccchHHHHHHH-Hhhcccc
Q 001939 106 ILKDEV-EWLN--SIKADLVVSDVV---PVACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQI-AEDYSHC 178 (993)
Q Consensus 106 ~l~~~~-~~L~--~~kPDlVVsD~~---~~a~laA~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~~l-~~~y~~~ 178 (993)
...... .+++ ..+||+|+++.. .++.++++..++|+|...+-.+. ....+..............+ ...+..+
T Consensus 86 ~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 164 (405)
T TIGR03449 86 FTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHTLAA-VKNAALADGDTPEPEARRIGEQQLVDNA 164 (405)
T ss_pred HHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHHhcCCCEEEeccchHH-HHHHhccCCCCCchHHHHHHHHHHHHhc
Confidence 111112 3333 358999998762 23455567789998764321111 11111100000000001111 1122333
Q ss_pred ceeeecCCC--------CCC-CCCCceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCCh--h-hHHHh---
Q 001939 179 EFLIRLPGY--------CPM-PAFRDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAG--W-KLKEE--- 242 (993)
Q Consensus 179 d~ll~~p~~--------~~~-p~~~~v~~vp~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~-~ll~~--- 242 (993)
+.++..... ... +....+.+.|+.... .+..+...++.+++++++ .++++.|..... . .+++.
T Consensus 165 d~vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~l~~~K~~~~li~a~~~ 243 (405)
T TIGR03449 165 DRLIANTDEEARDLVRHYDADPDRIDVVAPGADLERFRPGDRATERARLGLPLDT-KVVAFVGRIQPLKAPDVLLRAVAE 243 (405)
T ss_pred CeEEECCHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCCcHHHHHHhcCCCCCC-cEEEEecCCCcccCHHHHHHHHHH
Confidence 333322110 000 111123334433221 122345567777776444 466778877653 2 23332
Q ss_pred hCC--CC--cEEEEeCCCC----C------------CCCCCeEECCCCC--CHHHHHhhcCEEEec----CChhHHHHHH
Q 001939 243 YLP--SG--WKCLVCGASD----S------------QLPPNFIKLPKDA--YTPDFMAASDCMLGK----IGYGTVSEAL 296 (993)
Q Consensus 243 l~~--~~--~~~vv~G~~~----~------------~l~~nv~~~~~~~--~~pdlL~~adl~It~----~G~~Tv~Eal 296 (993)
+.. ++ +.++++|... + .+.+||++.|+.+ .++++|+.||++|.. +...++.||+
T Consensus 244 l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAm 323 (405)
T TIGR03449 244 LLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQ 323 (405)
T ss_pred HHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHH
Confidence 221 23 6677777411 1 0357899999874 467899999999953 2235899999
Q ss_pred HcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 297 AYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 297 ~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
++|+|+|+...+...| .+++...|+.++..+ .+.+.++|.++++++
T Consensus 324 a~G~Pvi~~~~~~~~e------~i~~~~~g~~~~~~d--~~~la~~i~~~l~~~ 369 (405)
T TIGR03449 324 ACGTPVVAARVGGLPV------AVADGETGLLVDGHD--PADWADALARLLDDP 369 (405)
T ss_pred HcCCCEEEecCCCcHh------hhccCCceEECCCCC--HHHHHHHHHHHHhCH
Confidence 9999999987543333 356667788887655 578999999998765
No 120
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.86 E-value=8.9e-07 Score=102.52 Aligned_cols=120 Identities=12% Similarity=-0.025 Sum_probs=81.0
Q ss_pred CCcEEEEEcCCCCCh--h-hHHH---hhCC-----CCcEEEEeCCCCC--------------------CCCCCeEECCCC
Q 001939 222 DVKLLILNFGGQPAG--W-KLKE---EYLP-----SGWKCLVCGASDS--------------------QLPPNFIKLPKD 270 (993)
Q Consensus 222 ~~~~Vlvs~G~~~~~--~-~ll~---~l~~-----~~~~~vv~G~~~~--------------------~l~~nv~~~~~~ 270 (993)
+...++++.|..... . .+++ .+.. +++.++++|.... .+.+||++.|+.
T Consensus 209 ~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~ 288 (392)
T cd03805 209 SGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSI 288 (392)
T ss_pred CCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 344567787876542 2 2232 2221 4678888886432 134689999987
Q ss_pred CC--HHHHHhhcCEEEecC---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHH
Q 001939 271 AY--TPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLE 344 (993)
Q Consensus 271 ~~--~pdlL~~adl~It~~---G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~ 344 (993)
+. ++++|..||+++..+ | ..++.||+++|+|+|+...+... +.+...+.|..++. +++.+.++|.
T Consensus 289 ~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~------e~i~~~~~g~~~~~---~~~~~a~~i~ 359 (392)
T cd03805 289 SDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPL------ETVVDGETGFLCEP---TPEEFAEAML 359 (392)
T ss_pred ChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCcH------HHhccCCceEEeCC---CHHHHHHHHH
Confidence 64 358899999999532 2 35789999999999998754332 33556567877653 3688999999
Q ss_pred HHHhCC
Q 001939 345 RAISLK 350 (993)
Q Consensus 345 ~ll~~~ 350 (993)
++++++
T Consensus 360 ~l~~~~ 365 (392)
T cd03805 360 KLANDP 365 (392)
T ss_pred HHHhCh
Confidence 999876
No 121
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.85 E-value=4.3e-07 Score=105.81 Aligned_cols=119 Identities=17% Similarity=0.058 Sum_probs=79.5
Q ss_pred CCcEEEEEcCCCCCh--h-hHHHh---hC--CCCcEEEEeCCCCCC-----------CCCCeEECCCCC--CHHHHHhhc
Q 001939 222 DVKLLILNFGGQPAG--W-KLKEE---YL--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDA--YTPDFMAAS 280 (993)
Q Consensus 222 ~~~~Vlvs~G~~~~~--~-~ll~~---l~--~~~~~~vv~G~~~~~-----------l~~nv~~~~~~~--~~pdlL~~a 280 (993)
+...++++.|..... . .+++. +. .+++.+++.|..... +.++|++.|+.+ .++++|+.|
T Consensus 191 ~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~a 270 (398)
T cd03796 191 NDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQG 270 (398)
T ss_pred CCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhC
Confidence 345677787876542 2 23332 21 357788888865421 456799998874 577999999
Q ss_pred CEEEecC---Ch-hHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 281 DCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 281 dl~It~~---G~-~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
|++|..+ |+ .++.|||++|+|+|+.+..+..| .+. .|.+..... +++.+.++|.+++++.
T Consensus 271 d~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~~e------~i~-~~~~~~~~~---~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 271 HIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGIPE------VLP-PDMILLAEP---DVESIVRKLEEAISIL 334 (398)
T ss_pred CEEEeCChhhccCHHHHHHHHcCCCEEECCCCCchh------hee-CCceeecCC---CHHHHHHHHHHHHhCh
Confidence 9999643 32 48999999999999987554433 233 344444332 3588999999998764
No 122
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.85 E-value=8e-07 Score=100.56 Aligned_cols=126 Identities=21% Similarity=0.212 Sum_probs=85.6
Q ss_pred HHHhCCCCCCcEEEEEcCCCCCh--h-hHHH---hhCC--CCcEEEEeCCCCCC-------------CCCCeEECCCCC-
Q 001939 214 RKELGIEDDVKLLILNFGGQPAG--W-KLKE---EYLP--SGWKCLVCGASDSQ-------------LPPNFIKLPKDA- 271 (993)
Q Consensus 214 r~~l~~~~~~~~Vlvs~G~~~~~--~-~ll~---~l~~--~~~~~vv~G~~~~~-------------l~~nv~~~~~~~- 271 (993)
++.++.+. .+.++++.|+.... . .+++ .+.. +++.++++|..... +++|+++.|+++
T Consensus 194 ~~~~~~~~-~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~ 272 (375)
T cd03821 194 RRKFPILP-DKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYG 272 (375)
T ss_pred hhhccCCC-CCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCCh
Confidence 44455443 34466777776542 2 2232 2322 46788888865421 367899999987
Q ss_pred -CHHHHHhhcCEEEecCC----hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 001939 272 -YTPDFMAASDCMLGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (993)
Q Consensus 272 -~~pdlL~~adl~It~~G----~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (993)
.+.++|..||++|..+- .+++.|||++|+|+|+.+..... +.+.. +.|.....+ .+.+.++|.++
T Consensus 273 ~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~------~~~~~-~~~~~~~~~---~~~~~~~i~~l 342 (375)
T cd03821 273 EDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPWQ------ELIEY-GCGWVVDDD---VDALAAALRRA 342 (375)
T ss_pred HHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCHH------HHhhc-CceEEeCCC---hHHHHHHHHHH
Confidence 67789999999997542 46899999999999998744332 33444 777776543 37899999999
Q ss_pred HhCC
Q 001939 347 ISLK 350 (993)
Q Consensus 347 l~~~ 350 (993)
++++
T Consensus 343 ~~~~ 346 (375)
T cd03821 343 LELP 346 (375)
T ss_pred HhCH
Confidence 9876
No 123
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.83 E-value=3.1e-07 Score=106.18 Aligned_cols=128 Identities=20% Similarity=0.109 Sum_probs=86.5
Q ss_pred HHHhCCCCCCcEEEEEcCCCCCh---hhHHHh---hC--CCCcEEEEeCCCCCC-----------------CCCCeEECC
Q 001939 214 RKELGIEDDVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDSQ-----------------LPPNFIKLP 268 (993)
Q Consensus 214 r~~l~~~~~~~~Vlvs~G~~~~~---~~ll~~---l~--~~~~~~vv~G~~~~~-----------------l~~nv~~~~ 268 (993)
++.+..+++ ..++++.|+.... ..+++. +. .+++.++++|..... +.+|+.+.|
T Consensus 211 ~~~~~~~~~-~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g 289 (398)
T cd03800 211 RARLLRDPD-KPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPG 289 (398)
T ss_pred HHhhccCCC-CcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEec
Confidence 334444434 4566777876542 223332 22 246777777754311 246899999
Q ss_pred CCC--CHHHHHhhcCEEEecC---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHH
Q 001939 269 KDA--YTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPY 342 (993)
Q Consensus 269 ~~~--~~pdlL~~adl~It~~---G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~ 342 (993)
+.+ +++.+++.||+++..+ | ..++.||+++|+|+|+.+... +.+.+++.+.|..++..+ ++.|.++
T Consensus 290 ~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~------~~e~i~~~~~g~~~~~~~--~~~l~~~ 361 (398)
T cd03800 290 RVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGG------PRDIVVDGVTGLLVDPRD--PEALAAA 361 (398)
T ss_pred cCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCC------HHHHccCCCCeEEeCCCC--HHHHHHH
Confidence 875 4678999999999643 2 368999999999999876332 345577777898887655 5899999
Q ss_pred HHHHHhCC
Q 001939 343 LERAISLK 350 (993)
Q Consensus 343 l~~ll~~~ 350 (993)
|.++++++
T Consensus 362 i~~l~~~~ 369 (398)
T cd03800 362 LRRLLTDP 369 (398)
T ss_pred HHHHHhCH
Confidence 99998765
No 124
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.82 E-value=4.9e-07 Score=106.30 Aligned_cols=130 Identities=11% Similarity=0.066 Sum_probs=82.2
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCCChhh-HHHh---hC--CCCcEEEEeCCCCC---C---------CC------------
Q 001939 212 EVRKELGIEDDVKLLILNFGGQPAGWK-LKEE---YL--PSGWKCLVCGASDS---Q---------LP------------ 261 (993)
Q Consensus 212 ~~r~~l~~~~~~~~Vlvs~G~~~~~~~-ll~~---l~--~~~~~~vv~G~~~~---~---------l~------------ 261 (993)
++++.++ ++++++ +..|+...... +++. +. .++++++++|.... . +.
T Consensus 224 ~~r~~~~--~~~~vi-l~~~~~~~~~~~ll~A~~~l~~~~~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~ 300 (425)
T PRK05749 224 TLRRQLA--PNRPVW-IAASTHEGEEELVLDAHRALLKQFPNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSA 300 (425)
T ss_pred HHHHHhc--CCCcEE-EEeCCCchHHHHHHHHHHHHHHhCCCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCC
Confidence 4566665 355554 44455433322 3332 22 25677888876542 1 10
Q ss_pred -CCeEECCCCCCHHHHHhhcCE-EEe----cCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCC
Q 001939 262 -PNFIKLPKDAYTPDFMAASDC-MLG----KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLL 335 (993)
Q Consensus 262 -~nv~~~~~~~~~pdlL~~adl-~It----~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~ 335 (993)
.++.+.+...+++++++.||+ |++ .+|..++.||+++|+|+|+.|.. ..+....+.+.+.|+++... +
T Consensus 301 ~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~--~~~~e~~~~~~~~g~~~~~~--d-- 374 (425)
T PRK05749 301 DTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHT--FNFKEIFERLLQAGAAIQVE--D-- 374 (425)
T ss_pred CCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCc--cCHHHHHHHHHHCCCeEEEC--C--
Confidence 134555555678899999999 453 24556899999999999998742 23445566777778776533 3
Q ss_pred hhhHHHHHHHHHhCC
Q 001939 336 TGHWKPYLERAISLK 350 (993)
Q Consensus 336 ~~~l~~~l~~ll~~~ 350 (993)
++.|.++|.++++++
T Consensus 375 ~~~La~~l~~ll~~~ 389 (425)
T PRK05749 375 AEDLAKAVTYLLTDP 389 (425)
T ss_pred HHHHHHHHHHHhcCH
Confidence 578999999999876
No 125
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.81 E-value=1.2e-06 Score=99.53 Aligned_cols=121 Identities=17% Similarity=0.112 Sum_probs=83.6
Q ss_pred CCcEEEEEcCCCCCh--h-hHHH---hhCC--CCcEEEEeCCCCCC-----------CCCCeEECCCCC--CHHHHHhhc
Q 001939 222 DVKLLILNFGGQPAG--W-KLKE---EYLP--SGWKCLVCGASDSQ-----------LPPNFIKLPKDA--YTPDFMAAS 280 (993)
Q Consensus 222 ~~~~Vlvs~G~~~~~--~-~ll~---~l~~--~~~~~vv~G~~~~~-----------l~~nv~~~~~~~--~~pdlL~~a 280 (993)
+.+.+++++|+.... . .+++ .+.. +++.+.++|..... +++||++.|+.+ .+.++|+.|
T Consensus 177 ~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~a 256 (355)
T cd03799 177 GEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAA 256 (355)
T ss_pred CCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhC
Confidence 345566777765432 2 2233 2322 46677788865431 468899999884 567899999
Q ss_pred CEEEec----------CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 281 DCMLGK----------IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 281 dl~It~----------~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
|++|.. +..+++.||+++|+|+|+.+..... +.++....|..++..+ .+.+.++|.++++++
T Consensus 257 di~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~------~~i~~~~~g~~~~~~~--~~~l~~~i~~~~~~~ 328 (355)
T cd03799 257 DLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIP------ELVEDGETGLLVPPGD--PEALADAIERLLDDP 328 (355)
T ss_pred CEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcc------hhhhCCCceEEeCCCC--HHHHHHHHHHHHhCH
Confidence 999973 3346899999999999998754333 2355555888887554 578999999998776
No 126
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=98.77 E-value=1.1e-06 Score=93.02 Aligned_cols=224 Identities=20% Similarity=0.290 Sum_probs=146.3
Q ss_pred CCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEe
Q 001939 630 DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV 709 (993)
Q Consensus 630 ~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~ 709 (993)
.|++|.|.+.+|.-.||||-..+..|++.++++++|++++-+|||...-+ |--||+ --++--+||+ .+|
T Consensus 70 ~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgR------G~tSgi-Gv~afe~GGF----IVD 138 (312)
T COG1907 70 EGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGR------GGTSGI-GVYAFEYGGF----IVD 138 (312)
T ss_pred CceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHcc------CCccce-eEEEEEECCE----EEE
Confidence 68999999999999999999999999999999999999998888876654 444553 4456677883 344
Q ss_pred ec------Ccc---ceeeecCCCCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCc
Q 001939 710 CQ------PAE---LLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEP 780 (993)
Q Consensus 710 ~~------~~~---~~~~v~~p~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~ 780 (993)
.. |.. ..-...+|.+|.|+++-..++|..- . +|.
T Consensus 139 GGh~~~f~ps~~sP~I~R~dfPedW~~VlaIP~~~rg~~----~-~~E-------------------------------- 181 (312)
T COG1907 139 GGHSFGFLPSSASPLIFRLDFPEDWRFVLAIPEVERGVS----G-RRE-------------------------------- 181 (312)
T ss_pred CCcccCcccCCCCceeeeecCCCceEEEEEecCCCcccc----c-hHH--------------------------------
Confidence 21 111 0134567889999999665554211 1 110
Q ss_pred cchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHH
Q 001939 781 EVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKA 860 (993)
Q Consensus 781 ~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~ 860 (993)
..++ ...|-+++++.. ++.|++ ...
T Consensus 182 ----~~if------~~~~p~p~~~~~----------------------------------------~ls~~v-----Lm~ 206 (312)
T COG1907 182 ----VDIF------KKYCPVPLEEVG----------------------------------------ELSHRV-----LMK 206 (312)
T ss_pred ----HHHH------HhcCCCCHHHHH----------------------------------------HHHHHH-----HHH
Confidence 1111 123333333221 122221 113
Q ss_pred HHHHHHccCChhHHHHHHHHHHHhhhhh---hh---cCCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCce
Q 001939 861 FKALLTAAASDDQLTSLGELLYQCHYSY---SA---CGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGT 934 (993)
Q Consensus 861 ~~~al~~~~~~~~l~~lG~Lm~~sH~sl---r~---~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~ 934 (993)
+.-++-. .|++.||+.|++-|... -+ -++-|+.+..+++.+.+ + +|||-+| -||.|
T Consensus 207 mmPavvE----~Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~-----------~-a~~agqS--SwGPt 268 (312)
T COG1907 207 MMPAVVE----RDIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVE-----------A-AYGAGQS--SWGPT 268 (312)
T ss_pred HhHHHHh----hCHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHH-----------h-ccccccc--ccCCE
Confidence 3334433 39999999999987776 22 35578899999999887 4 6888877 58899
Q ss_pred EEEEccCCcccHHHHHHHHHHHHhhcCCCCcEEee--cCCCCcc
Q 001939 935 ICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG--SSPGAGK 976 (993)
Q Consensus 935 vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~--~~~G~~~ 976 (993)
|..+.++... ..+..++.+.+. ..|+..++++. ..-||-.
T Consensus 269 vY~i~d~~~~-~~~~~~~~~~~~-~~g~~gev~vT~~rN~Ga~i 310 (312)
T COG1907 269 VYGIVDSREA-GSVVRKLIDILL-EEGIGGEVFVTKARNRGAEI 310 (312)
T ss_pred EEEecccccc-chHHHHHHHHHH-hcCCceEEEEeccCCCCcee
Confidence 9988766553 234555555554 55788888886 3666544
No 127
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.75 E-value=1.9e-06 Score=97.17 Aligned_cols=122 Identities=19% Similarity=0.099 Sum_probs=85.1
Q ss_pred CCcEEEEEcCCCCCh---hhHHH---hhCC--CCcEEEEeCCCCCC-----------CCCCeEECCCCCC--HHHHHhhc
Q 001939 222 DVKLLILNFGGQPAG---WKLKE---EYLP--SGWKCLVCGASDSQ-----------LPPNFIKLPKDAY--TPDFMAAS 280 (993)
Q Consensus 222 ~~~~Vlvs~G~~~~~---~~ll~---~l~~--~~~~~vv~G~~~~~-----------l~~nv~~~~~~~~--~pdlL~~a 280 (993)
+.+.+++..|+.... ..+++ .+.. +++.++++|..... +++|+.+.++.++ +.+++..|
T Consensus 200 ~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 279 (377)
T cd03798 200 EDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAA 279 (377)
T ss_pred CCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhc
Confidence 345667777876542 12333 2222 35677888876431 3678999988753 56899999
Q ss_pred CEEEec----CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCC
Q 001939 281 DCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (993)
Q Consensus 281 dl~It~----~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (993)
|++|.. +..+++.||+++|+|+|+.+... ..+.+...+.|..++..+ .+.+.++|.++++++.
T Consensus 280 d~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~------~~~~~~~~~~g~~~~~~~--~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 280 DVFVLPSLREGFGLVLLEAMACGLPVVATDVGG------IPEIITDGENGLLVPPGD--PEALAEAILRLLADPW 346 (377)
T ss_pred CeeecchhhccCChHHHHHHhcCCCEEEecCCC------hHHHhcCCcceeEECCCC--HHHHHHHHHHHhcCcH
Confidence 999953 34578999999999999976432 344566777788877665 5789999999998773
No 128
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.74 E-value=1e-06 Score=99.30 Aligned_cols=114 Identities=18% Similarity=0.109 Sum_probs=77.5
Q ss_pred EEEEcCCCCCh--h-hHHHhhCCCCcEEEEeCCCCCC------------CCCCeEECCCCCC--HHHHHhhcCEEEecC-
Q 001939 226 LILNFGGQPAG--W-KLKEEYLPSGWKCLVCGASDSQ------------LPPNFIKLPKDAY--TPDFMAASDCMLGKI- 287 (993)
Q Consensus 226 Vlvs~G~~~~~--~-~ll~~l~~~~~~~vv~G~~~~~------------l~~nv~~~~~~~~--~pdlL~~adl~It~~- 287 (993)
++++.|..... . .+++.....++.++++|..... +.+++++.|+.++ ++++|+.+|+++..+
T Consensus 173 ~i~~~Gr~~~~Kg~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~ 252 (335)
T cd03802 173 YLLFLGRISPEKGPHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPIL 252 (335)
T ss_pred EEEEEEeeccccCHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc
Confidence 45566765442 2 2344443457788888876421 1578999999864 468999999999532
Q ss_pred ---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhC
Q 001939 288 ---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (993)
Q Consensus 288 ---G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (993)
| ..++.|||++|+|+|+.......| .++....|..++. .+.+.++|.+++..
T Consensus 253 ~~E~~~~~~lEAma~G~PvI~~~~~~~~e------~i~~~~~g~l~~~----~~~l~~~l~~l~~~ 308 (335)
T cd03802 253 WEEPFGLVMIEAMACGTPVIAFRRGAVPE------VVEDGVTGFLVDS----VEELAAAVARADRL 308 (335)
T ss_pred ccCCcchHHHHHHhcCCCEEEeCCCCchh------heeCCCcEEEeCC----HHHHHHHHHHHhcc
Confidence 2 358999999999999987544333 3444446877764 67888999888643
No 129
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.74 E-value=1e-06 Score=101.53 Aligned_cols=128 Identities=15% Similarity=0.030 Sum_probs=85.4
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCCCh--h-hHHHh---hC--CCCcEEEEeCCCCC----------------CCCCCeEEC
Q 001939 212 EVRKELGIEDDVKLLILNFGGQPAG--W-KLKEE---YL--PSGWKCLVCGASDS----------------QLPPNFIKL 267 (993)
Q Consensus 212 ~~r~~l~~~~~~~~Vlvs~G~~~~~--~-~ll~~---l~--~~~~~~vv~G~~~~----------------~l~~nv~~~ 267 (993)
.+++.++++++++ ++++.|..... . .+++. +. .++++++++|.... .+.+++.++
T Consensus 179 ~~~~~~~~~~~~~-~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 257 (372)
T cd03792 179 YILEKYGIDPERP-YITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVL 257 (372)
T ss_pred HHHHHhCCCCCCc-EEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEE
Confidence 4667788765655 55677876652 2 23332 22 25677888876531 034678877
Q ss_pred CCC----CCHHHHHhhcCEEEecC---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhH
Q 001939 268 PKD----AYTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHW 339 (993)
Q Consensus 268 ~~~----~~~pdlL~~adl~It~~---G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l 339 (993)
++. ..++++++++|+|+..+ | ..++.||+++|+|+|+.+.....|+ +.....|+.++. .+.+
T Consensus 258 ~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~------i~~~~~g~~~~~----~~~~ 327 (372)
T cd03792 258 TLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGGIPLQ------IEDGETGFLVDT----VEEA 327 (372)
T ss_pred ecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCCchhh------cccCCceEEeCC----cHHH
Confidence 765 34668999999999754 2 3589999999999999875444433 556667876652 3567
Q ss_pred HHHHHHHHhCC
Q 001939 340 KPYLERAISLK 350 (993)
Q Consensus 340 ~~~l~~ll~~~ 350 (993)
..+|.+++.++
T Consensus 328 a~~i~~ll~~~ 338 (372)
T cd03792 328 AVRILYLLRDP 338 (372)
T ss_pred HHHHHHHHcCH
Confidence 78888888765
No 130
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.73 E-value=4.8e-07 Score=103.86 Aligned_cols=121 Identities=13% Similarity=0.103 Sum_probs=82.9
Q ss_pred cEEEEEcCCCCC----h-hhHHHhh--CCCCcEEEEeCCCCCC-----------CCCCeEECCCCCC----HHHHHhhcC
Q 001939 224 KLLILNFGGQPA----G-WKLKEEY--LPSGWKCLVCGASDSQ-----------LPPNFIKLPKDAY----TPDFMAASD 281 (993)
Q Consensus 224 ~~Vlvs~G~~~~----~-~~ll~~l--~~~~~~~vv~G~~~~~-----------l~~nv~~~~~~~~----~pdlL~~ad 281 (993)
+.++++.|.... + ..+++++ +.+++.++++|..... ++++|++.|++++ ++++++.+|
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d 259 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVS 259 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCc
Confidence 445677776431 2 2344432 2346788888866421 4688999998754 456677799
Q ss_pred EEEecCC----hhHHHHHHHcCCcEEEEe-CCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCC
Q 001939 282 CMLGKIG----YGTVSEALAYKLPFVFVR-RDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPC 352 (993)
Q Consensus 282 l~It~~G----~~Tv~Eal~~GvP~l~ip-~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~ 352 (993)
++|..+- ..++.|||++|+|+|+.. ..+.. +.++....|..++..+ ++.+.++|.++++++..
T Consensus 260 ~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~------eiv~~~~~G~lv~~~d--~~~la~~i~~l~~~~~~ 327 (359)
T PRK09922 260 ALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPR------DIIKPGLNGELYTPGN--IDEFVGKLNKVISGEVK 327 (359)
T ss_pred EEEECCcccCcChHHHHHHHcCCCEEEeCCCCChH------HHccCCCceEEECCCC--HHHHHHHHHHHHhCccc
Confidence 9996432 468999999999999976 32222 3355556688887654 58999999999988843
No 131
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.73 E-value=2.9e-06 Score=98.77 Aligned_cols=82 Identities=11% Similarity=-0.081 Sum_probs=62.6
Q ss_pred CCCeEECCCCC--CHHHHHhhcCEEEecCC----hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCC
Q 001939 261 PPNFIKLPKDA--YTPDFMAASDCMLGKIG----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDL 334 (993)
Q Consensus 261 ~~nv~~~~~~~--~~pdlL~~adl~It~~G----~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~ 334 (993)
.++|+++|+++ .++++|+.||++|..+- ..++.|||++|+|+|+...+... +.+.....|..++..+
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~g~~------e~i~~~~~G~lv~~~d- 352 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAPVR------EVITDGENGLLVDFFD- 352 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCCCch------hhcccCCceEEcCCCC-
Confidence 36799999875 46789999999996332 24799999999999998754333 3355556788887665
Q ss_pred ChhhHHHHHHHHHhCC
Q 001939 335 LTGHWKPYLERAISLK 350 (993)
Q Consensus 335 ~~~~l~~~l~~ll~~~ 350 (993)
++.|.++|.++++++
T Consensus 353 -~~~la~~i~~ll~~~ 367 (396)
T cd03818 353 -PDALAAAVIELLDDP 367 (396)
T ss_pred -HHHHHHHHHHHHhCH
Confidence 689999999999876
No 132
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.71 E-value=1.5e-06 Score=89.87 Aligned_cols=109 Identities=22% Similarity=0.337 Sum_probs=79.9
Q ss_pred HHHhCCCC--CCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhh
Q 001939 621 MTELGVRF--EDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASA 698 (993)
Q Consensus 621 ~~~~g~~~--~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~ 698 (993)
+.+++++. ..|+++.+.|+||.|.||+||.|=.||++.|+..++|.+++..+|+++|..+| |+ |- .+
T Consensus 71 la~~~~~~~~~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iE------Pt---Ds--ii 139 (293)
T COG4542 71 LARWGVTKLINTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIE------PT---DS--II 139 (293)
T ss_pred HHHhCccceecCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcC------Cc---cc--ee
Confidence 44555542 36899999999999999999999999999999999999999999999999998 32 21 33
Q ss_pred ccccceEEEEeecCccceeeecCCCCeEEEEEeCCCccccCCCCccc
Q 001939 699 CGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGS 745 (993)
Q Consensus 699 ~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv~~~~~~~~y~~ 745 (993)
|-+ +.++|.+...+.+...-++.+.+++++.+..-.| .+|+.
T Consensus 140 F~~---~tlFd~r~g~~~~~~g~~PpL~ilv~e~~~~v~T--~~y~q 181 (293)
T COG4542 140 FDK---ATLFDQREGRVIEFLGEMPPLHILVFEGKGTVET--VDYNQ 181 (293)
T ss_pred ccc---ceeehhccchHHHhcCCCCceEEEEEcCCCceee--eeccC
Confidence 444 4667766544322222235788899886654333 35663
No 133
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.68 E-value=4.2e-06 Score=95.05 Aligned_cols=119 Identities=16% Similarity=0.068 Sum_probs=83.3
Q ss_pred CcEEEEEcCCCCCh--h-hHHHhh--CCCCcEEEEeCCCCCC-----------CCCCeEECCCCCC--HHHHHhhcCEEE
Q 001939 223 VKLLILNFGGQPAG--W-KLKEEY--LPSGWKCLVCGASDSQ-----------LPPNFIKLPKDAY--TPDFMAASDCML 284 (993)
Q Consensus 223 ~~~Vlvs~G~~~~~--~-~ll~~l--~~~~~~~vv~G~~~~~-----------l~~nv~~~~~~~~--~pdlL~~adl~I 284 (993)
.+.++++.|+.... . .+++.+ +. ++.++++|..... +.+||++.|+++. ++++++.||++|
T Consensus 190 ~~~~i~~~G~~~~~K~~~~li~a~~~l~-~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i 268 (357)
T cd03795 190 GRPFFLFVGRLVYYKGLDVLLEAAAALP-DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFV 268 (357)
T ss_pred CCcEEEEecccccccCHHHHHHHHHhcc-CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEE
Confidence 34567778876542 2 233322 23 6788888875421 3679999999864 568999999999
Q ss_pred ec------CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH-cCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 285 GK------IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF-YQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 285 t~------~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~-~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
.. +...++.||+++|+|+|+.+.....|. +.. .+.|..++..+ .+.|.++|.++++++
T Consensus 269 ~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~------i~~~~~~g~~~~~~d--~~~~~~~i~~l~~~~ 333 (357)
T cd03795 269 FPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSY------VNLHGVTGLVVPPGD--PAALAEAIRRLLEDP 333 (357)
T ss_pred eCCcccccccchHHHHHHHcCCCEEecCCCCchhH------HhhCCCceEEeCCCC--HHHHHHHHHHHHHCH
Confidence 42 223579999999999999875444333 443 67888887654 579999999999877
No 134
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.66 E-value=3.1e-06 Score=96.06 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=81.7
Q ss_pred CcEEEEEcCCCCCh--h-hHHHh---hC--CCCcEEEEeCCCCCC----------------CCCCeEECCC-CC--CHHH
Q 001939 223 VKLLILNFGGQPAG--W-KLKEE---YL--PSGWKCLVCGASDSQ----------------LPPNFIKLPK-DA--YTPD 275 (993)
Q Consensus 223 ~~~Vlvs~G~~~~~--~-~ll~~---l~--~~~~~~vv~G~~~~~----------------l~~nv~~~~~-~~--~~pd 275 (993)
.+.+++++|+.... . .+++. +. .+++.++++|...+. +.+||.+++. .+ .+++
T Consensus 184 ~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~ 263 (366)
T cd03822 184 GRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPE 263 (366)
T ss_pred CCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHH
Confidence 34566777766542 2 23332 22 256788888865321 3568888765 43 4678
Q ss_pred HHhhcCEEEec------CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhC
Q 001939 276 FMAASDCMLGK------IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (993)
Q Consensus 276 lL~~adl~It~------~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (993)
+|+.||++|.. +-.+++.||+++|+|+|+.+.+. .++ +...+.|..+...+ .+.+.++|.+++++
T Consensus 264 ~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~------i~~~~~g~~~~~~d--~~~~~~~l~~l~~~ 334 (366)
T cd03822 264 LFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEE------VLDGGTGLLVPPGD--PAALAEAIRRLLAD 334 (366)
T ss_pred HHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hhe------eeeCCCcEEEcCCC--HHHHHHHHHHHHcC
Confidence 99999999953 33458999999999999987544 333 55667888887665 57899999999987
Q ss_pred C
Q 001939 350 K 350 (993)
Q Consensus 350 ~ 350 (993)
+
T Consensus 335 ~ 335 (366)
T cd03822 335 P 335 (366)
T ss_pred h
Confidence 5
No 135
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.65 E-value=2.6e-06 Score=97.47 Aligned_cols=119 Identities=18% Similarity=0.068 Sum_probs=83.9
Q ss_pred cEEEEEcCCCCCh--h-hHHHh---hC--CCCcEEEEeCCCCC---------C--CCCCeEECCCCC--CHHHHHhhcCE
Q 001939 224 KLLILNFGGQPAG--W-KLKEE---YL--PSGWKCLVCGASDS---------Q--LPPNFIKLPKDA--YTPDFMAASDC 282 (993)
Q Consensus 224 ~~Vlvs~G~~~~~--~-~ll~~---l~--~~~~~~vv~G~~~~---------~--l~~nv~~~~~~~--~~pdlL~~adl 282 (993)
+.++++.|+.... . .+++. +. .+++.++++|.... . +.++|++.|+.+ .++++|..||+
T Consensus 188 ~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~ 267 (367)
T cd05844 188 PPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARI 267 (367)
T ss_pred CcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCE
Confidence 3456666766542 2 23332 22 24678888886541 1 367899999874 47799999999
Q ss_pred EEecC----------ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 283 MLGKI----------GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 283 ~It~~----------G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
+|..+ -.+++.||+++|+|+|+.+... +.+.+...+.|..++..+ ++.|.++|.++++++
T Consensus 268 ~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~------~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~ 337 (367)
T cd05844 268 FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG------IPEAVEDGETGLLVPEGD--VAALAAALGRLLADP 337 (367)
T ss_pred EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC------chhheecCCeeEEECCCC--HHHHHHHHHHHHcCH
Confidence 99633 2478999999999999987543 344566778898887655 578999999998766
No 136
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.64 E-value=9.4e-06 Score=95.93 Aligned_cols=83 Identities=19% Similarity=0.109 Sum_probs=62.6
Q ss_pred CCCCeEECCCC--CCHHHHHhhc----CEEEecC---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE
Q 001939 260 LPPNFIKLPKD--AYTPDFMAAS----DCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM 329 (993)
Q Consensus 260 l~~nv~~~~~~--~~~pdlL~~a----dl~It~~---G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l 329 (993)
+.++|++.++. ++++++|+.| |+||..+ | ..++.|||++|+|+|+....+. .+.+.....|+.+
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~------~eiv~~~~~G~lv 388 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGP------RDIIANCRNGLLV 388 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCc------HHHhcCCCcEEEe
Confidence 35678888764 4678889876 9999754 3 3599999999999999875433 2335555678888
Q ss_pred ecCCCChhhHHHHHHHHHhCC
Q 001939 330 IRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 330 ~~~~~~~~~l~~~l~~ll~~~ 350 (993)
+..+ ++.|.++|.++++++
T Consensus 389 ~~~d--~~~la~~i~~ll~~~ 407 (439)
T TIGR02472 389 DVLD--LEAIASALEDALSDS 407 (439)
T ss_pred CCCC--HHHHHHHHHHHHhCH
Confidence 7766 578999999999876
No 137
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=5.9e-06 Score=97.29 Aligned_cols=230 Identities=11% Similarity=0.017 Sum_probs=126.7
Q ss_pred HHHHHHhhccHHHhHHHHHHHHhcCCCcEEEECCC---chHHHHHHHcCCcEEEEecCchh-----HHH-HHHHhh----
Q 001939 93 EKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVV---PVACRAAADAGIRSVCVTNFSWD-----FIY-AEYVMA---- 159 (993)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~---~~a~laA~~~gIP~V~i~~~~~~-----~~~-~~y~~~---- 159 (993)
..+...+-+.+..-+.....++++.+||+|++... ..+.++|..+++|++..+-..+. ... ..|...
T Consensus 255 ~~~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~a~l~g~laA~lagvpviv~~~h~~~~~~~~r~~~~e~~~~~~a~ 334 (578)
T PRK15490 255 RLLLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDGACLMIALAALIAGVPRIQLGLRGLPPVVRKRLFKPEYEPLYQAL 334 (578)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhcCCCEEEEeecccCCcchhhHHHHHHHHhhhhc
Confidence 44444443344445667788999999999998752 35778888999999866321111 000 000000
Q ss_pred --cc-c----chHHHHHHHHhhccccceeeecCCCCCCCCCCceeecCcccccCCc---ChHHHHHH--hCCCCCCcEEE
Q 001939 160 --AG-H----HHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHK---SRKEVRKE--LGIEDDVKLLI 227 (993)
Q Consensus 160 --~~-~----~~~~i~~~l~~~y~~~d~ll~~p~~~~~p~~~~v~~vp~~~~~~~~---~~~~~r~~--l~~~~~~~~Vl 227 (993)
.. . ....+.+.+.+.+ ..| ++...+++.|+......+ .+...+.. .+++++.+ ++
T Consensus 335 ~i~~~sd~v~~s~~v~~~l~~~l-------gip-----~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~-vI 401 (578)
T PRK15490 335 AVVPGVDFMSNNHCVTRHYADWL-------KLE-----AKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADT-TI 401 (578)
T ss_pred eeEecchhhhccHHHHHHHHHHh-------CCC-----HHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCc-EE
Confidence 00 0 0000001111111 011 122334555554321111 11123322 23333333 44
Q ss_pred EEcCCCCCh---hhHHHh---hC--CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCEEEecC-
Q 001939 228 LNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDCMLGKI- 287 (993)
Q Consensus 228 vs~G~~~~~---~~ll~~---l~--~~~~~~vv~G~~~~~-----------l~~nv~~~~~~~~~pdlL~~adl~It~~- 287 (993)
.+.|..... ..++.. +. .++++++++|.++.. +.++|++.|+.++++++|+.+|+||..+
T Consensus 402 g~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~ 481 (578)
T PRK15490 402 GGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILFSR 481 (578)
T ss_pred EEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEccc
Confidence 555554332 223332 22 256788888876421 4588999999999999999999999642
Q ss_pred --C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHH
Q 001939 288 --G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYL 343 (993)
Q Consensus 288 --G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l 343 (993)
| .+++.|||++|+|+|+....+. .+.+.....|..++..+. ..+.+++
T Consensus 482 ~EGfp~vlLEAMA~GlPVVATdvGG~------~EiV~dG~nG~LVp~~D~--~aLa~ai 532 (578)
T PRK15490 482 YEGLPNVLIEAQMVGVPVISTPAGGS------AECFIEGVSGFILDDAQT--VNLDQAC 532 (578)
T ss_pred ccCccHHHHHHHHhCCCEEEeCCCCc------HHHcccCCcEEEECCCCh--hhHHHHH
Confidence 3 4689999999999999875433 344667778988887653 3444443
No 138
>PLN02275 transferase, transferring glycosyl groups
Probab=98.63 E-value=6.4e-06 Score=95.08 Aligned_cols=92 Identities=12% Similarity=0.110 Sum_probs=65.5
Q ss_pred CCcEEEEeCCCCCC---------C-CCCeEECC-CC--CCHHHHHhhcCEEEe----cCC---hhHHHHHHHcCCcEEEE
Q 001939 246 SGWKCLVCGASDSQ---------L-PPNFIKLP-KD--AYTPDFMAASDCMLG----KIG---YGTVSEALAYKLPFVFV 305 (993)
Q Consensus 246 ~~~~~vv~G~~~~~---------l-~~nv~~~~-~~--~~~pdlL~~adl~It----~~G---~~Tv~Eal~~GvP~l~i 305 (993)
++++++++|.++.. + -+|+.+.+ |. +++|++|+.||++|. ..| .+++.||+++|+|+|+.
T Consensus 260 ~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~ 339 (371)
T PLN02275 260 PRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAV 339 (371)
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEe
Confidence 46788888876531 1 14677655 44 467899999999994 112 35799999999999997
Q ss_pred eCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHH
Q 001939 306 RRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (993)
Q Consensus 306 p~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll 347 (993)
.... +.+.++..+.|+.++ + ++.|.++|.+++
T Consensus 340 ~~gg------~~eiv~~g~~G~lv~--~--~~~la~~i~~l~ 371 (371)
T PLN02275 340 SYSC------IGELVKDGKNGLLFS--S--SSELADQLLELL 371 (371)
T ss_pred cCCC------hHHHccCCCCeEEEC--C--HHHHHHHHHHhC
Confidence 6322 455577777898885 2 678888888764
No 139
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.60 E-value=5.3e-06 Score=98.80 Aligned_cols=138 Identities=19% Similarity=0.155 Sum_probs=88.2
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCCh--hh-HHH---hhCCCCcEEEEeCCCCCC-----------CCCCeEE-CCCCC
Q 001939 210 RKEVRKELGIEDDVKLLILNFGGQPAG--WK-LKE---EYLPSGWKCLVCGASDSQ-----------LPPNFIK-LPKDA 271 (993)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~~-ll~---~l~~~~~~~vv~G~~~~~-----------l~~nv~~-~~~~~ 271 (993)
++.+++.++++++...++++.|..... .. +++ .+...++.+++.|...+. ++.++.+ .+|..
T Consensus 268 k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~ 347 (466)
T PRK00654 268 KRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDE 347 (466)
T ss_pred HHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCH
Confidence 346788888875444566777876652 22 333 233346788888865421 4666654 56654
Q ss_pred C-HHHHHhhcCEEEecC---Ch-hHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 001939 272 Y-TPDFMAASDCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (993)
Q Consensus 272 ~-~pdlL~~adl~It~~---G~-~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (993)
. ++.+++.||++|..+ |. .+.+||+++|+|+|+....+..|.-.+...-...+.|+.++..+ ++.|.++|.++
T Consensus 348 ~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d--~~~la~~i~~~ 425 (466)
T PRK00654 348 ALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFN--AEDLLRALRRA 425 (466)
T ss_pred HHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCC--HHHHHHHHHHH
Confidence 4 357899999999743 32 58999999999999976554444311000001227788887655 57889999988
Q ss_pred HhC
Q 001939 347 ISL 349 (993)
Q Consensus 347 l~~ 349 (993)
+.+
T Consensus 426 l~~ 428 (466)
T PRK00654 426 LEL 428 (466)
T ss_pred HHH
Confidence 763
No 140
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.58 E-value=3.2e-07 Score=103.68 Aligned_cols=143 Identities=14% Similarity=0.009 Sum_probs=89.5
Q ss_pred CCcEEEEEcCCCCCh-hhHH----H---hhCCCCcEEEEeCCCCCC-----CC--CCeEECCCCCCHHHHHhhcCEEEec
Q 001939 222 DVKLLILNFGGQPAG-WKLK----E---EYLPSGWKCLVCGASDSQ-----LP--PNFIKLPKDAYTPDFMAASDCMLGK 286 (993)
Q Consensus 222 ~~~~Vlvs~G~~~~~-~~ll----~---~l~~~~~~~vv~G~~~~~-----l~--~nv~~~~~~~~~pdlL~~adl~It~ 286 (993)
+.++|.+.-||.+.. ..++ + .+.....++++.+....+ .. ..+.+. .++.++|++||++|+.
T Consensus 166 ~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~~~~i~~~~~~~~~~~~~---~~~~~~m~~aDlal~~ 242 (347)
T PRK14089 166 KEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFKGKDLKEIYGDISEFEIS---YDTHKALLEAEFAFIC 242 (347)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCcHHHHHHHHhcCCCcEEe---ccHHHHHHhhhHHHhc
Confidence 347899999988763 1111 1 222222456666654321 11 233333 3567999999999999
Q ss_pred CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHH---HcCcEEEE-------------ecCCCChhhHHHHHHHHHhCC
Q 001939 287 IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLE---FYQGGVEM-------------IRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 287 ~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~---~~G~g~~l-------------~~~~~~~~~l~~~l~~ll~~~ 350 (993)
+|..|+ |++.+|+|||+ ++....-|..|+++++ ..|..-.+ ..++.+++.+.+.+.+.-...
T Consensus 243 SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~~~~~~ 320 (347)
T PRK14089 243 SGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKEMDREK 320 (347)
T ss_pred CcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHHHHHHHHH
Confidence 997777 99999999999 5555567889999999 55554333 345678888888777621110
Q ss_pred C--Cc-----cCCCCHHHHHHHHHHH
Q 001939 351 P--CY-----EGGINGGEVAAHILQE 369 (993)
Q Consensus 351 ~--~~-----~~~~~ga~~~a~~i~~ 369 (993)
- .+ ....+++.++|+.+.+
T Consensus 321 ~~~~~~~l~~~l~~~a~~~~A~~i~~ 346 (347)
T PRK14089 321 FFKKSKELREYLKHGSAKNVAKILKE 346 (347)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 0 00 0234666777666654
No 141
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.57 E-value=1.1e-06 Score=95.17 Aligned_cols=115 Identities=16% Similarity=0.146 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHH-hCCCCC---CCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcccc
Q 001939 610 AAYVAGTILVLMTE-LGVRFE---DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIV 685 (993)
Q Consensus 610 ~~yv~~~i~~~~~~-~g~~~~---~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~ 685 (993)
.|.++.++..+.+. .+.... .|++|.+.++||+++|||||||-++|++.+++++++.++++++|.++|.++
T Consensus 61 ~NLv~kA~~~l~~~~~~~~~~~~~~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~l----- 135 (257)
T PRK04181 61 ENIIYKAYQELKNKGFSNELIEFFKKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKV----- 135 (257)
T ss_pred CcHHHHHHHHHHHhccccccccCCCceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh-----
Confidence 57787777765542 332111 489999999999999999999999999999999999999999999999753
Q ss_pred CCCCCcchhhHhhcc-ccceEEEEeecCccceeeecCCCCeEEEEEeCCCccccC
Q 001939 686 GAPCGVMDQMASACG-EANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (993)
Q Consensus 686 G~~~G~mDq~~~~~G-g~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv~~~~~ 739 (993)
| .|---+++| +. + +..... +..++++.+.. .++++..++.-+|+
T Consensus 136 G-----aDvPffl~~~~~--a-~~~G~G-e~l~~l~~~~~-~~~lv~P~~~vsT~ 180 (257)
T PRK04181 136 G-----ADVAFFISGYKS--A-NVSGIG-EIVEEFEEEIL-NLEIFTPNIFCSTK 180 (257)
T ss_pred C-----CCccEEecCCce--E-EEEeeC-CeeEECCCCCC-eEEEECCCCCcCHH
Confidence 2 366556676 42 2 222222 33345532222 38888777666653
No 142
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.56 E-value=7.3e-06 Score=95.78 Aligned_cols=120 Identities=15% Similarity=0.078 Sum_probs=85.3
Q ss_pred CcEEEEEcCCCCCh--h-hHHHh---hC--CCCcEEEEeCCCCCC-----------CCCCeEECCCCC--CHHHHHhhcC
Q 001939 223 VKLLILNFGGQPAG--W-KLKEE---YL--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDA--YTPDFMAASD 281 (993)
Q Consensus 223 ~~~Vlvs~G~~~~~--~-~ll~~---l~--~~~~~~vv~G~~~~~-----------l~~nv~~~~~~~--~~pdlL~~ad 281 (993)
.++.+++.|..... . .+++. +. .+++.++++|.++.. +.++|.+.|+.+ +++++|+.||
T Consensus 221 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aD 300 (406)
T PRK15427 221 TPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDAD 300 (406)
T ss_pred CCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCC
Confidence 45667788877653 2 23332 22 246778888865421 467899999875 5679999999
Q ss_pred EEEecC---------Ch-hHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHh-CC
Q 001939 282 CMLGKI---------GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAIS-LK 350 (993)
Q Consensus 282 l~It~~---------G~-~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~-~~ 350 (993)
++|..+ |. ++++|||++|+|+|+....+..| .++....|+.++..+ ++.|.++|.++++ ++
T Consensus 301 v~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E------~v~~~~~G~lv~~~d--~~~la~ai~~l~~~d~ 372 (406)
T PRK15427 301 VFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPE------LVEADKSGWLVPEND--AQALAQRLAAFSQLDT 372 (406)
T ss_pred EEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchh------hhcCCCceEEeCCCC--HHHHHHHHHHHHhCCH
Confidence 999632 33 57999999999999987544443 355566788887665 5799999999998 65
No 143
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.52 E-value=1.2e-05 Score=95.95 Aligned_cols=131 Identities=21% Similarity=0.163 Sum_probs=86.9
Q ss_pred hHHHHHHhCCCC-CCcEEEEEcCCCCCh--hh-HHH---hhCCCCcEEEEeCCCCCC-----------CCCCeEECC-CC
Q 001939 210 RKEVRKELGIED-DVKLLILNFGGQPAG--WK-LKE---EYLPSGWKCLVCGASDSQ-----------LPPNFIKLP-KD 270 (993)
Q Consensus 210 ~~~~r~~l~~~~-~~~~Vlvs~G~~~~~--~~-ll~---~l~~~~~~~vv~G~~~~~-----------l~~nv~~~~-~~ 270 (993)
+..+++.++++. +...++++.|..... .. +++ .+...+++++++|...+. .+.++.+.. +.
T Consensus 276 k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~ 355 (473)
T TIGR02095 276 KEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYD 355 (473)
T ss_pred HHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 345788888864 133456677776652 22 223 233345788888877421 366776643 33
Q ss_pred CC-HHHHHhhcCEEEecC---Ch-hHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc------CcEEEEecCCCChhhH
Q 001939 271 AY-TPDFMAASDCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY------QGGVEMIRRDLLTGHW 339 (993)
Q Consensus 271 ~~-~pdlL~~adl~It~~---G~-~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~------G~g~~l~~~~~~~~~l 339 (993)
.. ++.+++.||+++..+ |. .+++||+++|+|+|+....+..|. +... +.|+.++..+ ++.+
T Consensus 356 ~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~------v~~~~~~~~~~~G~l~~~~d--~~~l 427 (473)
T TIGR02095 356 EALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADT------VVDGDPEAESGTGFLFEEYD--PGAL 427 (473)
T ss_pred HHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccce------EecCCCCCCCCceEEeCCCC--HHHH
Confidence 32 457999999999754 32 588999999999999775554444 3333 7788887655 5789
Q ss_pred HHHHHHHHh
Q 001939 340 KPYLERAIS 348 (993)
Q Consensus 340 ~~~l~~ll~ 348 (993)
.++|.+++.
T Consensus 428 a~~i~~~l~ 436 (473)
T TIGR02095 428 LAALSRALR 436 (473)
T ss_pred HHHHHHHHH
Confidence 999999876
No 144
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.51 E-value=9.2e-06 Score=94.78 Aligned_cols=96 Identities=15% Similarity=0.085 Sum_probs=66.1
Q ss_pred hHHHhh--CCCCcEEEEeCCCCCCCCCCeEECCCCCC---HHHHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCC
Q 001939 238 KLKEEY--LPSGWKCLVCGASDSQLPPNFIKLPKDAY---TPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRD 308 (993)
Q Consensus 238 ~ll~~l--~~~~~~~vv~G~~~~~l~~nv~~~~~~~~---~pdlL~~adl~It~~----G~~Tv~Eal~~GvP~l~ip~~ 308 (993)
.+++++ +.+++.++++|...+..++++..+++..+ ++++|+.||+||..+ -.+++.|||++|+|+|+.+..
T Consensus 260 ~li~A~~~l~~~~~L~ivG~g~~~~~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~g 339 (405)
T PRK10125 260 QLVREMMALGDKIELHTFGKFSPFTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSD 339 (405)
T ss_pred HHHHHHHhCCCCeEEEEEcCCCcccccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCC
Confidence 344443 34567888888765445667888887644 567889999999744 235899999999999999855
Q ss_pred CCCChHHHHHHHHHcCcEEEEecCCCChhhHHHH
Q 001939 309 YFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPY 342 (993)
Q Consensus 309 ~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~ 342 (993)
+..| +...+.|+.++..+. +.|...
T Consensus 340 G~~E-------iv~~~~G~lv~~~d~--~~La~~ 364 (405)
T PRK10125 340 AARE-------VLQKSGGKTVSEEEV--LQLAQL 364 (405)
T ss_pred ChHH-------hEeCCcEEEECCCCH--HHHHhc
Confidence 4322 233457999987763 455543
No 145
>PLN02407 diphosphomevalonate decarboxylase
Probab=98.50 E-value=9.1e-06 Score=90.05 Aligned_cols=60 Identities=23% Similarity=0.303 Sum_probs=52.7
Q ss_pred EEEEEe--CCCCCCCCchHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhccccCCCCCcchhhHhhcccc
Q 001939 633 SMLVSS--AVPEGKGVSSSASVEVASMSAIAAAHGLNIH-PRDLALLCQKVENHIVGAPCGVMDQMASACGEA 702 (993)
Q Consensus 633 ~i~i~s--~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~-~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~ 702 (993)
++.|.| ++|.++||+||||..+|++.|+..+++.+++ +.+|..+|. +| || .|.- ++|||.
T Consensus 105 ~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr------~G--SG-Sa~r-S~~Gg~ 167 (343)
T PLN02407 105 HVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIAR------QG--SG-SACR-SLYGGF 167 (343)
T ss_pred cEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHh------cc--Ch-HHHH-HhhCCe
Confidence 566776 9999999999999999999999999999999 999999998 45 56 3555 999995
No 146
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.48 E-value=2.3e-05 Score=90.74 Aligned_cols=132 Identities=15% Similarity=0.152 Sum_probs=89.2
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCCh---hhHHHh---hC--CCCcEEEEeCCCCC------------------CCCCC
Q 001939 210 RKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDS------------------QLPPN 263 (993)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~G~~~~~---~~ll~~---l~--~~~~~~vv~G~~~~------------------~l~~n 263 (993)
....++.++++++. .++++.|..... ..++++ +. .+++.++++|.... .++.+
T Consensus 180 ~~~~~~~~~~~~~~-~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~ 258 (380)
T PRK15484 180 QPNLRQQLNISPDE-TVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDR 258 (380)
T ss_pred hHHHHHHhCCCCCC-eEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCc
Confidence 34556777776444 456677876652 223433 21 25678888875421 13568
Q ss_pred eEECCCCC--CHHHHHhhcCEEEecCC-----hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE-ecCCCC
Q 001939 264 FIKLPKDA--YTPDFMAASDCMLGKIG-----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM-IRRDLL 335 (993)
Q Consensus 264 v~~~~~~~--~~pdlL~~adl~It~~G-----~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l-~~~~~~ 335 (993)
+++.++.+ .++++|+.||++|..+. ..++.|||++|+|+|+....+.. +.++....|..+ +.. +
T Consensus 259 v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~------Eiv~~~~~G~~l~~~~--d 330 (380)
T PRK15484 259 CIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGIT------EFVLEGITGYHLAEPM--T 330 (380)
T ss_pred EEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCCcH------hhcccCCceEEEeCCC--C
Confidence 88888874 57799999999996442 25789999999999998754333 335555668744 333 3
Q ss_pred hhhHHHHHHHHHhCC
Q 001939 336 TGHWKPYLERAISLK 350 (993)
Q Consensus 336 ~~~l~~~l~~ll~~~ 350 (993)
++.|.++|.++++++
T Consensus 331 ~~~la~~I~~ll~d~ 345 (380)
T PRK15484 331 SDSIISDINRTLADP 345 (380)
T ss_pred HHHHHHHHHHHHcCH
Confidence 689999999999876
No 147
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=98.47 E-value=1.4e-05 Score=83.64 Aligned_cols=92 Identities=20% Similarity=0.248 Sum_probs=61.2
Q ss_pred CCCCchHHHHHHHHH-HHHHHH-hCCCCCH-HHHHHHHHHHhccccC-CCCCcchhhHhhccccceEEEEeecCccc---
Q 001939 643 GKGVSSSASVEVASM-SAIAAA-HGLNIHP-RDLALLCQKVENHIVG-APCGVMDQMASACGEANKLLAMVCQPAEL--- 715 (993)
Q Consensus 643 g~GLgSSAA~~Va~~-~al~~~-~g~~l~~-~el~~la~~~E~~~~G-~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~--- 715 (993)
..|||||||+++.++ .+++.+ .+-+++. .++-++||.+-..-+| .-|| -|-++++||+ +++-.|.|...
T Consensus 107 KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSG-fDiaaA~fGs---iiyrRF~p~li~~l 182 (337)
T COG3890 107 KTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSG-FDIAAAIFGS---IIYRRFEPGLIPKL 182 (337)
T ss_pred cCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCcc-chhhHhhhcc---eEEeecCcchhhhh
Confidence 689999999999988 333333 5556665 7888999887665554 5567 5999999999 34433444322
Q ss_pred --eeeecCCCCeEEEEEeCCCccccC
Q 001939 716 --LGVVEIPSHIRFWGIDSGIRHSVG 739 (993)
Q Consensus 716 --~~~v~~p~~~~~ll~dSgv~~~~~ 739 (993)
...+++ .++.++..+.+...+|.
T Consensus 183 ~qig~~nf-g~y~LmmGd~a~gSeTv 207 (337)
T COG3890 183 RQIGAVNF-GDYYLMMGDQAIGSETV 207 (337)
T ss_pred HhhCcccc-cCeeeeecccccCccch
Confidence 122233 36778888877666554
No 148
>PRK14099 glycogen synthase; Provisional
Probab=98.44 E-value=3.5e-05 Score=91.94 Aligned_cols=134 Identities=20% Similarity=0.192 Sum_probs=82.5
Q ss_pred HHHHHHhCCCCC-CcEEEEEcCCCCC--hhh-HHH---hhCCCCcEEEEeCCCCCC-----------CCCCe-EECCCCC
Q 001939 211 KEVRKELGIEDD-VKLLILNFGGQPA--GWK-LKE---EYLPSGWKCLVCGASDSQ-----------LPPNF-IKLPKDA 271 (993)
Q Consensus 211 ~~~r~~l~~~~~-~~~Vlvs~G~~~~--~~~-ll~---~l~~~~~~~vv~G~~~~~-----------l~~nv-~~~~~~~ 271 (993)
..+++.++++.+ ...++.+.|.... +.. +++ .+...++.+++.|.+.+. .+.++ .+.+|.+
T Consensus 281 ~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~ 360 (485)
T PRK14099 281 AALQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDE 360 (485)
T ss_pred HHHHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCH
Confidence 457788888643 2335556676554 222 233 233346788888876421 35566 5788877
Q ss_pred CHHHHH-hhcCEEEecC---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHH-HHH--HcCcEEEEecCCCChhhHHHHH
Q 001939 272 YTPDFM-AASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRN-MLE--FYQGGVEMIRRDLLTGHWKPYL 343 (993)
Q Consensus 272 ~~pdlL-~~adl~It~~---G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~-~l~--~~G~g~~l~~~~~~~~~l~~~l 343 (993)
.++.++ +.||+|+..+ | ..+.+|||++|+|.|+....+..|.-.... ..+ ..+.|+.++..+ ++.|.++|
T Consensus 361 ~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d--~~~La~ai 438 (485)
T PRK14099 361 ALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVT--ADALAAAL 438 (485)
T ss_pred HHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCC--HHHHHHHH
Confidence 788877 5699999743 2 358899999998777765434444311100 000 015688887665 57889999
Q ss_pred HHH
Q 001939 344 ERA 346 (993)
Q Consensus 344 ~~l 346 (993)
.++
T Consensus 439 ~~a 441 (485)
T PRK14099 439 RKT 441 (485)
T ss_pred HHH
Confidence 873
No 149
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.44 E-value=2.6e-05 Score=90.21 Aligned_cols=135 Identities=13% Similarity=0.098 Sum_probs=85.5
Q ss_pred ChHHHHHHhCCCCCCcEEEEEcCCCCCh---hhHHHhh--CCCCcEEEEeCCCCC--C-----------C---CCCeEEC
Q 001939 209 SRKEVRKELGIEDDVKLLILNFGGQPAG---WKLKEEY--LPSGWKCLVCGASDS--Q-----------L---PPNFIKL 267 (993)
Q Consensus 209 ~~~~~r~~l~~~~~~~~Vlvs~G~~~~~---~~ll~~l--~~~~~~~vv~G~~~~--~-----------l---~~nv~~~ 267 (993)
....++..++++++.+ ++++.|..... ..+++.+ +.+++.++++|.... . + ..++..+
T Consensus 187 ~~~~~~~~~~~~~~~~-~i~~~Grl~~~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~ 265 (388)
T TIGR02149 187 DGNVVLDRYGIDRSRP-YILFVGRITRQKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWI 265 (388)
T ss_pred chHHHHHHhCCCCCce-EEEEEcccccccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEe
Confidence 3455677788765554 56667776542 2333332 234566665543221 0 1 1346654
Q ss_pred -CCCC--CHHHHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCCh----
Q 001939 268 -PKDA--YTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLT---- 336 (993)
Q Consensus 268 -~~~~--~~pdlL~~adl~It~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~---- 336 (993)
++.+ .++++|++||++|..+ ...++.||+++|+|+|+.+... +.+.++....|..++..+.+.
T Consensus 266 ~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~------~~e~i~~~~~G~~~~~~~~~~~~~~ 339 (388)
T TIGR02149 266 NKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGG------IPEVVVDGETGFLVPPDNSDADGFQ 339 (388)
T ss_pred cCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCC------HHHHhhCCCceEEcCCCCCcccchH
Confidence 4443 4678999999999743 2367899999999999987433 234466667798887765422
Q ss_pred hhHHHHHHHHHhCC
Q 001939 337 GHWKPYLERAISLK 350 (993)
Q Consensus 337 ~~l~~~l~~ll~~~ 350 (993)
+.|.++|.+++.++
T Consensus 340 ~~l~~~i~~l~~~~ 353 (388)
T TIGR02149 340 AELAKAINILLADP 353 (388)
T ss_pred HHHHHHHHHHHhCH
Confidence 67888898888776
No 150
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.43 E-value=2.7e-05 Score=91.15 Aligned_cols=113 Identities=13% Similarity=0.048 Sum_probs=73.4
Q ss_pred EEEEcCCCCCh--h-hHHHh---hC--CCCcEEEEeCCCCCC---------CCCCeE-ECCCCCCHHHHHhhcCEEEecC
Q 001939 226 LILNFGGQPAG--W-KLKEE---YL--PSGWKCLVCGASDSQ---------LPPNFI-KLPKDAYTPDFMAASDCMLGKI 287 (993)
Q Consensus 226 Vlvs~G~~~~~--~-~ll~~---l~--~~~~~~vv~G~~~~~---------l~~nv~-~~~~~~~~pdlL~~adl~It~~ 287 (993)
++++.|..... . .+++. +. .++++++++|.++.. ++-+++ +.++ ....++++.+|+||..+
T Consensus 230 ~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~-~~~~~~~~~~DvFv~pS 308 (462)
T PLN02846 230 GAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGR-DHADPLFHDYKVFLNPS 308 (462)
T ss_pred EEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCC-CCHHHHHHhCCEEEECC
Confidence 56677876653 2 23332 21 246788888887642 232333 3454 33447999999999754
Q ss_pred ----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 288 ----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 288 ----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
-.+++.|||++|+|+|+...+. . +.+.+.+.|...+ +.+.+..++.+++.++
T Consensus 309 ~~Et~g~v~lEAmA~G~PVVa~~~~~-~------~~v~~~~ng~~~~----~~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 309 TTDVVCTTTAEALAMGKIVVCANHPS-N------EFFKQFPNCRTYD----DGKGFVRATLKALAEE 364 (462)
T ss_pred CcccchHHHHHHHHcCCcEEEecCCC-c------ceeecCCceEecC----CHHHHHHHHHHHHccC
Confidence 3468999999999999987542 2 3355556665552 3578899999998754
No 151
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.37 E-value=0.00028 Score=87.03 Aligned_cols=125 Identities=14% Similarity=0.044 Sum_probs=79.3
Q ss_pred HHHhCC--CCCCcEEEEEcCCCCCh--h-hHHHhh-----CCCCcEEEEeCCCCC-----------------------CC
Q 001939 214 RKELGI--EDDVKLLILNFGGQPAG--W-KLKEEY-----LPSGWKCLVCGASDS-----------------------QL 260 (993)
Q Consensus 214 r~~l~~--~~~~~~Vlvs~G~~~~~--~-~ll~~l-----~~~~~~~vv~G~~~~-----------------------~l 260 (993)
++.+++ +++++ ++++.|..... . .+++++ +..+..++++|.... .+
T Consensus 539 ~~~~G~l~d~~kp-iIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL 617 (784)
T TIGR02470 539 DEHYGYLKDPNKP-IIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQL 617 (784)
T ss_pred HHHhCCCCCCCCc-EEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCC
Confidence 455664 34555 56777876653 2 334432 233456666654321 03
Q ss_pred CCCeEECCCC---CCHHHHHh----hcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE
Q 001939 261 PPNFIKLPKD---AYTPDFMA----ASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM 329 (993)
Q Consensus 261 ~~nv~~~~~~---~~~pdlL~----~adl~It~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l 329 (993)
.++|.+.++. ..+++++. .+|+||..+ -+.|+.|||+||+|+|+....+ ..+.++....|..+
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG------~~EiV~dg~tGfLV 691 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG------PLEIIQDGVSGFHI 691 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC------HHHHhcCCCcEEEe
Confidence 5788888875 23456664 257999654 2369999999999999987433 34446666679999
Q ss_pred ecCCCChhhHHHHHHHHH
Q 001939 330 IRRDLLTGHWKPYLERAI 347 (993)
Q Consensus 330 ~~~~~~~~~l~~~l~~ll 347 (993)
++.+ ++.+.++|.+++
T Consensus 692 dp~D--~eaLA~aL~~ll 707 (784)
T TIGR02470 692 DPYH--GEEAAEKIVDFF 707 (784)
T ss_pred CCCC--HHHHHHHHHHHH
Confidence 8766 478888888776
No 152
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.36 E-value=1e-05 Score=85.04 Aligned_cols=53 Identities=23% Similarity=0.021 Sum_probs=40.2
Q ss_pred CCCeEECCCC---CCHHHHHhhcCEEEecCC----hhHHHHHHHcCCcEEEEeCCCCCCh
Q 001939 261 PPNFIKLPKD---AYTPDFMAASDCMLGKIG----YGTVSEALAYKLPFVFVRRDYFNEE 313 (993)
Q Consensus 261 ~~nv~~~~~~---~~~pdlL~~adl~It~~G----~~Tv~Eal~~GvP~l~ip~~~~~EQ 313 (993)
..|+++.++. +.+..+++.||++|.... .+++.||+++|+|+|+.+.+...|.
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e~ 219 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGPPEI 219 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCCcceE
Confidence 4677777663 233456667999998775 6899999999999999987665553
No 153
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.35 E-value=9.2e-05 Score=93.12 Aligned_cols=83 Identities=17% Similarity=0.104 Sum_probs=63.5
Q ss_pred CCCCeEECCCC--CCHHHHHhhc----CEEEecC---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE
Q 001939 260 LPPNFIKLPKD--AYTPDFMAAS----DCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM 329 (993)
Q Consensus 260 l~~nv~~~~~~--~~~pdlL~~a----dl~It~~---G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l 329 (993)
+.++|.+.++. +.+|++|+.| |+||..+ | ..++.|||+||+|+|+....+..| .++....|+.+
T Consensus 546 L~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~E------II~~g~nGlLV 619 (1050)
T TIGR02468 546 LYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVD------IHRVLDNGLLV 619 (1050)
T ss_pred CCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHH------HhccCCcEEEE
Confidence 35678888875 4688999877 6999754 3 268999999999999987544333 35555678888
Q ss_pred ecCCCChhhHHHHHHHHHhCC
Q 001939 330 IRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 330 ~~~~~~~~~l~~~l~~ll~~~ 350 (993)
++.+ ++.|.++|.+++.++
T Consensus 620 dP~D--~eaLA~AL~~LL~Dp 638 (1050)
T TIGR02468 620 DPHD--QQAIADALLKLVADK 638 (1050)
T ss_pred CCCC--HHHHHHHHHHHhhCH
Confidence 8766 578999999999877
No 154
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.35 E-value=3.2e-05 Score=88.12 Aligned_cols=295 Identities=19% Similarity=0.226 Sum_probs=160.2
Q ss_pred EecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHHHHHh
Q 001939 20 YYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETA 99 (993)
Q Consensus 20 ~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 99 (993)
|.++|.-.|-.. +..|+++|+++..++.|++-+...+...... . .++..-.. .+.....+.++..+
T Consensus 2 ~i~AGE~SGD~~-ga~Li~~Lk~~~p~~~~~GvGG~~M~~~G~~-------~-l~d~~~ls----vmG~~Evl~~l~~~- 67 (373)
T PF02684_consen 2 FISAGEASGDLH-GARLIRALKARDPDIEFYGVGGPRMQAAGVE-------S-LFDMEELS----VMGFVEVLKKLPKL- 67 (373)
T ss_pred EEEeeCccHHHH-HHHHHHHHHhhCCCcEEEEEechHHHhCCCc-------e-ecchHHhh----hccHHHHHHHHHHH-
Confidence 345677777544 4478899999988888774433222222211 0 01100000 01111222333332
Q ss_pred hccHHHhHHHHHHHHhcCCCcEEE-ECCCchHHHHHH---HcCCc--EEEE-ecCchhHHHHHHHhhcccchHHHHHHHH
Q 001939 100 VAPRKSILKDEVEWLNSIKADLVV-SDVVPVACRAAA---DAGIR--SVCV-TNFSWDFIYAEYVMAAGHHHRSIVWQIA 172 (993)
Q Consensus 100 ~~~~~~~l~~~~~~L~~~kPDlVV-sD~~~~a~laA~---~~gIP--~V~i-~~~~~~~~~~~y~~~~~~~~~~i~~~l~ 172 (993)
.+...+..+.+.+.+||+|| .|++-....+|+ ..|+| ++.+ +.-.|.. +.. -++.+.
T Consensus 68 ----~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~PqvWAW--r~~----------R~~~i~ 131 (373)
T PF02684_consen 68 ----KRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISPQVWAW--RPG----------RAKKIK 131 (373)
T ss_pred ----HHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECCceeee--Ccc----------HHHHHH
Confidence 23456667888999999999 788665655554 45777 6655 4433420 000 011122
Q ss_pred hhccccceee-ecCCCCCC-CCC-Cceeec--Ccccc-cCCcChHHHHHHhCCCCCCcEEEEEcCCCCCh-hh----HHH
Q 001939 173 EDYSHCEFLI-RLPGYCPM-PAF-RDVIDV--PLVVR-RLHKSRKEVRKELGIEDDVKLLILNFGGQPAG-WK----LKE 241 (993)
Q Consensus 173 ~~y~~~d~ll-~~p~~~~~-p~~-~~v~~v--p~~~~-~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-~~----ll~ 241 (993)
.. +|.++ -+|++.+. ... .++++| |.... .+...+...++.+ +++++++|.+.-||-... .. +++
T Consensus 132 ~~---~D~ll~ifPFE~~~y~~~g~~~~~VGHPl~d~~~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~ 207 (373)
T PF02684_consen 132 KY---VDHLLVIFPFEPEFYKKHGVPVTYVGHPLLDEVKPEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLE 207 (373)
T ss_pred HH---HhheeECCcccHHHHhccCCCeEEECCcchhhhccCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHH
Confidence 11 12222 34554211 000 123444 44333 2334456677777 788999999999986653 11 222
Q ss_pred h---hC--CCCcEEEEeCCCCC--C--------CCCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEe
Q 001939 242 E---YL--PSGWKCLVCGASDS--Q--------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVR 306 (993)
Q Consensus 242 ~---l~--~~~~~~vv~G~~~~--~--------l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip 306 (993)
. +. .++.++++...... + .+.++.+.-.....-++|++||+.+..+| +.+.|+..+|+|||++-
T Consensus 208 aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~al~~SG-TaTLE~Al~g~P~Vv~Y 286 (373)
T PF02684_consen 208 AAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAMAAADAALAASG-TATLEAALLGVPMVVAY 286 (373)
T ss_pred HHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcchhhcCC-HHHHHHHHhCCCEEEEE
Confidence 1 21 25666665533221 1 12333322112344599999999999999 89999999999999986
Q ss_pred CCCCCChHHHHHHHHHcCcEE------------EEecCCCChhhHHHHHHHHHhCC
Q 001939 307 RDYFNEEPFLRNMLEFYQGGV------------EMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 307 ~~~~~EQ~~na~~l~~~G~g~------------~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
.... =....++++.+..+-- .+-.++.+++.+...+.+++.++
T Consensus 287 k~~~-lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~ 341 (373)
T PF02684_consen 287 KVSP-LTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENP 341 (373)
T ss_pred cCcH-HHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCH
Confidence 4322 1245677777655421 12234567778888888888766
No 155
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.35 E-value=2.1e-05 Score=89.24 Aligned_cols=117 Identities=15% Similarity=0.028 Sum_probs=79.2
Q ss_pred cEEEEEcCCCCCh--h-hHHHh---hCC--CCcEEEEeCCCCCC------------CCCCeEECCCC--CCHHHHHhhcC
Q 001939 224 KLLILNFGGQPAG--W-KLKEE---YLP--SGWKCLVCGASDSQ------------LPPNFIKLPKD--AYTPDFMAASD 281 (993)
Q Consensus 224 ~~Vlvs~G~~~~~--~-~ll~~---l~~--~~~~~vv~G~~~~~------------l~~nv~~~~~~--~~~pdlL~~ad 281 (993)
+.+++..|+.... . .+++. +.. +++.++++|..... .++|+++.++. +.++++|+.||
T Consensus 195 ~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d 274 (365)
T cd03809 195 RPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGAR 274 (365)
T ss_pred CCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhh
Confidence 3456677776642 2 23332 222 24677788865421 46789999988 45678999999
Q ss_pred EEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 282 CMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 282 l~It~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
++|..+ ..+++.||+++|+|+|+...+...|. +. ..|..+...+ .+.+.++|.+++.++
T Consensus 275 ~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~------~~--~~~~~~~~~~--~~~~~~~i~~l~~~~ 337 (365)
T cd03809 275 AFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEV------AG--DAALYFDPLD--PEALAAAIERLLEDP 337 (365)
T ss_pred hhcccchhccCCCCHHHHhcCCCcEEecCCCCccce------ec--CceeeeCCCC--HHHHHHHHHHHhcCH
Confidence 999542 34589999999999999876555554 22 2355566554 578999999998776
No 156
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.34 E-value=0.00012 Score=83.33 Aligned_cols=125 Identities=20% Similarity=0.193 Sum_probs=79.7
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCCCh--h-hHHHhh--CCCCcEEEEeCCCCCC------------CCCCeEECCCCCC--
Q 001939 212 EVRKELGIEDDVKLLILNFGGQPAG--W-KLKEEY--LPSGWKCLVCGASDSQ------------LPPNFIKLPKDAY-- 272 (993)
Q Consensus 212 ~~r~~l~~~~~~~~Vlvs~G~~~~~--~-~ll~~l--~~~~~~~vv~G~~~~~------------l~~nv~~~~~~~~-- 272 (993)
+.++.++..++ +. +++.|+.... . .+++.+ +..++.++++|..... ..++|++.|+.+.
T Consensus 183 ~~~~~~~~~~~-~~-i~~~G~~~~~Kg~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~ 260 (363)
T cd04955 183 EILKKYGLEPG-RY-YLLVGRIVPENNIDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQE 260 (363)
T ss_pred hhHHhcCCCCC-cE-EEEEecccccCCHHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHH
Confidence 34445555433 33 4567776542 2 233332 2346788888875211 3578999998753
Q ss_pred HHHHHhhcCEEEecCC-----hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHH
Q 001939 273 TPDFMAASDCMLGKIG-----YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (993)
Q Consensus 273 ~pdlL~~adl~It~~G-----~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll 347 (993)
+.+++..+|+++..+- .+++.|||++|+|+|+...+...|. ++. .|..++..+ .+.++|.+++
T Consensus 261 ~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~------~~~--~g~~~~~~~----~l~~~i~~l~ 328 (363)
T cd04955 261 LLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNREV------LGD--KAIYFKVGD----DLASLLEELE 328 (363)
T ss_pred HHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCcccee------ecC--CeeEecCch----HHHHHHHHHH
Confidence 5588889999986432 2479999999999999876555554 222 344454333 2889999998
Q ss_pred hCC
Q 001939 348 SLK 350 (993)
Q Consensus 348 ~~~ 350 (993)
+++
T Consensus 329 ~~~ 331 (363)
T cd04955 329 ADP 331 (363)
T ss_pred hCH
Confidence 776
No 157
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.34 E-value=4.3e-06 Score=80.10 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=82.1
Q ss_pred cEEEEEcCCCCCh--------hhHHHhhCCCCc--EEEEeCCCCCC-------C--CCC--eEECCCCCCHHHHHhhcCE
Q 001939 224 KLLILNFGGQPAG--------WKLKEEYLPSGW--KCLVCGASDSQ-------L--PPN--FIKLPKDAYTPDFMAASDC 282 (993)
Q Consensus 224 ~~Vlvs~G~~~~~--------~~ll~~l~~~~~--~~vv~G~~~~~-------l--~~n--v~~~~~~~~~pdlL~~adl 282 (993)
..++|+.|+.... .++++++..-++ .++-.|++..- . -.. +..++|.+.+.+.++.||+
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~Adl 83 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRSADL 83 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhhccE
Confidence 4689999987763 123334444444 34456876421 1 122 4455677888899999999
Q ss_pred EEecCChhHHHHHHHcCCcEEEEeCCC--CCChHHHHHHHHHcCcEEEEecCCC
Q 001939 283 MLGKIGYGTVSEALAYKLPFVFVRRDY--FNEEPFLRNMLEFYQGGVEMIRRDL 334 (993)
Q Consensus 283 ~It~~G~~Tv~Eal~~GvP~l~ip~~~--~~EQ~~na~~l~~~G~g~~l~~~~~ 334 (993)
+|+|+|.||++|.+..|+|.|+++... .+.|...|..+.+.|+=....+.++
T Consensus 84 VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ps~L 137 (170)
T KOG3349|consen 84 VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTPSTL 137 (170)
T ss_pred EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEeeccch
Confidence 999999999999999999999998652 3568889999999999998887664
No 158
>PRK05905 hypothetical protein; Provisional
Probab=98.32 E-value=1e-05 Score=87.41 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=81.9
Q ss_pred HHHHH-HHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCC
Q 001939 610 AAYVA-GTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAP 688 (993)
Q Consensus 610 ~~yv~-~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~ 688 (993)
.|.++ .++..+.+..+.. +|++|.+..+||.++||||+||=..|++.+|+++++ ++.+++.+++.++ |
T Consensus 66 ~nli~~ka~~~l~~~~~~~--~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~l-----G-- 134 (258)
T PRK05905 66 SRLILVKTLEWLRDKYNIK--NHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKL-----G-- 134 (258)
T ss_pred cchHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHh-----C--
Confidence 56776 7777777666754 589999999999999999999999999999999997 6888998888753 2
Q ss_pred CCcchhhHhhcc-ccceEEEEeecCccceeeecCCCCeEEEEEeCCCccccC
Q 001939 689 CGVMDQMASACG-EANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVG 739 (993)
Q Consensus 689 ~G~mDq~~~~~G-g~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv~~~~~ 739 (993)
.|---+++| +. + +..... +..++++.+....+++++.++.-+|+
T Consensus 135 ---ADVPFfl~g~~~--a-~~~G~G-E~l~pl~~~~~~~~vlv~P~~~vST~ 179 (258)
T PRK05905 135 ---SDIPFFLSGYKT--A-YISDYG-SQVEDLIGQFKLTYKVIFMNVNVSTK 179 (258)
T ss_pred ---CCcceEEeCCcc--E-EEEeeC-ceeEECCCCCCceEEEECCCCCCCHH
Confidence 365557777 53 2 222222 33355554444568888877766654
No 159
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.30 E-value=3.8e-05 Score=85.61 Aligned_cols=317 Identities=21% Similarity=0.190 Sum_probs=176.6
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccc-cChHHHHHH
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALT-VDRLASLEK 94 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~ 94 (993)
++| +++.|.-.|-+-- -.|.++|+++-.+|.|++-+...+...... . .++.. .+. +.....+.+
T Consensus 2 ~ki-~i~AGE~SGDllG-a~LikaLk~~~~~~efvGvgG~~m~aeG~~-------s-l~~~~-----elsvmGf~EVL~~ 66 (381)
T COG0763 2 LKI-ALSAGEASGDLLG-AGLIKALKARYPDVEFVGVGGEKMEAEGLE-------S-LFDME-----ELSVMGFVEVLGR 66 (381)
T ss_pred ceE-EEEecccchhhHH-HHHHHHHHhhCCCeEEEEeccHHHHhccCc-------c-ccCHH-----HHHHhhHHHHHHH
Confidence 345 3467777775543 468899998866888875543233222221 0 00000 000 011112222
Q ss_pred HHHHhhccHHHhHHHHHHHHhcCCCcEEE-ECCCchHHHHHH---HcC--CcEEEE-ecCchhHHHHHHHhhcccchHHH
Q 001939 95 YSETAVAPRKSILKDEVEWLNSIKADLVV-SDVVPVACRAAA---DAG--IRSVCV-TNFSWDFIYAEYVMAAGHHHRSI 167 (993)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~~kPDlVV-sD~~~~a~laA~---~~g--IP~V~i-~~~~~~~~~~~y~~~~~~~~~~i 167 (993)
+... -....+..+.+...+||++| .|.+-.....++ ..+ +|+|.+ +.-.|.. +...
T Consensus 67 lp~l-----lk~~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsVWAW--r~~R---------- 129 (381)
T COG0763 67 LPRL-----LKIRRELVRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSVWAW--RPKR---------- 129 (381)
T ss_pred HHHH-----HHHHHHHHHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcceeee--chhh----------
Confidence 2221 12345556777899999999 577555555543 345 998876 4433420 1000
Q ss_pred HHHHHhhccccceee-ecCCCCCC-CCC-CceeecC--cccc-cCCcChHHHHHHhCCCCCCcEEEEEcCCCCChh----
Q 001939 168 VWQIAEDYSHCEFLI-RLPGYCPM-PAF-RDVIDVP--LVVR-RLHKSRKEVRKELGIEDDVKLLILNFGGQPAGW---- 237 (993)
Q Consensus 168 ~~~l~~~y~~~d~ll-~~p~~~~~-p~~-~~v~~vp--~~~~-~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~~---- 237 (993)
+..+.. .+|.++ -+|+.... ..+ ..+++|| .... +...+++.+|+.++++.+.+++.+.-||-....
T Consensus 130 a~~i~~---~~D~lLailPFE~~~y~k~g~~~~yVGHpl~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~ 206 (381)
T COG0763 130 AVKIAK---YVDHLLAILPFEPAFYDKFGLPCTYVGHPLADEIPLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLL 206 (381)
T ss_pred HHHHHH---HhhHeeeecCCCHHHHHhcCCCeEEeCChhhhhccccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHH
Confidence 011221 123333 35553210 000 1244554 2222 234578889999999999999999999876631
Q ss_pred h-HHH---hhC--CCCcEEEEeCCCCCC-------C-----CCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcC
Q 001939 238 K-LKE---EYL--PSGWKCLVCGASDSQ-------L-----PPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYK 299 (993)
Q Consensus 238 ~-ll~---~l~--~~~~~~vv~G~~~~~-------l-----~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~G 299 (993)
+ +.+ .+. .++.++++.-.+... + ..++.+.+. .-.+.|.+||+.+..+| +.+.|++.+|
T Consensus 207 ~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~aD~al~aSG-T~tLE~aL~g 283 (381)
T COG0763 207 PPFVQAAQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDG--EKRKAFAAADAALAASG-TATLEAALAG 283 (381)
T ss_pred HHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecCc--hHHHHHHHhhHHHHhcc-HHHHHHHHhC
Confidence 1 222 121 256677766443321 1 133444332 23489999999999999 8899999999
Q ss_pred CcEEEEeCCCCCChHHHHHHHHHcCcEEE------------EecCCCChhhHHHHHHHHHhCCCCcc------------C
Q 001939 300 LPFVFVRRDYFNEEPFLRNMLEFYQGGVE------------MIRRDLLTGHWKPYLERAISLKPCYE------------G 355 (993)
Q Consensus 300 vP~l~ip~~~~~EQ~~na~~l~~~G~g~~------------l~~~~~~~~~l~~~l~~ll~~~~~~~------------~ 355 (993)
+|||+.=....-. ...++++.+..+.-. +-.++.+++.+..++..++.+...+. -
T Consensus 284 ~P~Vv~Yk~~~it-~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l 362 (381)
T COG0763 284 TPMVVAYKVKPIT-YFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYL 362 (381)
T ss_pred CCEEEEEeccHHH-HHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHH
Confidence 9999975433222 346666666655421 11256778899999999998873211 2
Q ss_pred CCC-HHHHHHHHHHHHH
Q 001939 356 GIN-GGEVAAHILQETA 371 (993)
Q Consensus 356 ~~~-ga~~~a~~i~~~~ 371 (993)
+.+ ..+.+|+.+.+.+
T Consensus 363 ~~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 363 REDPASEIAAQAVLELL 379 (381)
T ss_pred cCCcHHHHHHHHHHHHh
Confidence 333 6667777777653
No 160
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.28 E-value=0.00014 Score=86.48 Aligned_cols=227 Identities=15% Similarity=0.137 Sum_probs=126.3
Q ss_pred HhHHHHHHHHhcCCCcEEE-ECCCchHHHH---HHHcCC--cEEEE-ecCchhHHHHHHHhhcccchHHHHHHHHhhccc
Q 001939 105 SILKDEVEWLNSIKADLVV-SDVVPVACRA---AADAGI--RSVCV-TNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSH 177 (993)
Q Consensus 105 ~~l~~~~~~L~~~kPDlVV-sD~~~~a~la---A~~~gI--P~V~i-~~~~~~~~~~~y~~~~~~~~~~i~~~l~~~y~~ 177 (993)
+...+..+.+++.+||+|| .|++-....+ ++..|+ |++.+ +.-.|.- +.. -++.+...
T Consensus 297 ~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqVWAW--R~~----------Rikki~k~--- 361 (608)
T PRK01021 297 YRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSIWAW--RPK----------RKTILEKY--- 361 (608)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccceee--Ccc----------hHHHHHHH---
Confidence 3456667888999999999 5875444433 455675 98876 4433420 000 01111111
Q ss_pred ccee-eecCCCCCC--CCCCceeec--Cccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCCh-h---h-HHHh----
Q 001939 178 CEFL-IRLPGYCPM--PAFRDVIDV--PLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAG-W---K-LKEE---- 242 (993)
Q Consensus 178 ~d~l-l~~p~~~~~--p~~~~v~~v--p~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-~---~-ll~~---- 242 (993)
.|.+ ..+|++.+. ..-.+++++ |..... ...++++.++.++++++.++|.+.-||-... . + +++.
T Consensus 362 vD~ll~IfPFE~~~y~~~gv~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~ 441 (608)
T PRK01021 362 LDLLLLILPFEQNLFKDSPLRTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLAS 441 (608)
T ss_pred hhhheecCccCHHHHHhcCCCeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 1222 234543210 000123333 333332 2345677888999987889999999987653 1 1 1221
Q ss_pred hCCCCcEEEEeCCCCC--C-----C-C---CCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCC
Q 001939 243 YLPSGWKCLVCGASDS--Q-----L-P---PNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFN 311 (993)
Q Consensus 243 l~~~~~~~vv~G~~~~--~-----l-~---~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~ 311 (993)
.+..+.++++...... + + . .++.++.- ..-.++|++||+.++.+| +.+.|++.+|+|||++=....-
T Consensus 442 ~l~~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~-~~~~~~m~aaD~aLaaSG-TaTLEaAL~g~PmVV~YK~s~L 519 (608)
T PRK01021 442 SLASTHQLLVSSANPKYDHLILEVLQQEGCLHSHIVPS-QFRYELMRECDCALAKCG-TIVLETALNQTPTIVTCQLRPF 519 (608)
T ss_pred HhccCeEEEEecCchhhHHHHHHHHhhcCCCCeEEecC-cchHHHHHhcCeeeecCC-HHHHHHHHhCCCEEEEEecCHH
Confidence 2223455555432221 1 1 1 12344321 123589999999999999 8899999999999997543221
Q ss_pred ChHHHHHHHHHc---CcE---------E---EEe-cCCCChhhHHHHHHHHHhCC
Q 001939 312 EEPFLRNMLEFY---QGG---------V---EMI-RRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 312 EQ~~na~~l~~~---G~g---------~---~l~-~~~~~~~~l~~~l~~ll~~~ 350 (993)
-...++++.+. -++ + .+. .++.+++.+.+++ +++.++
T Consensus 520 -ty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~ 572 (608)
T PRK01021 520 -DTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTS 572 (608)
T ss_pred -HHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCH
Confidence 13456777661 111 1 121 3567788888886 776665
No 161
>PLN02316 synthase/transferase
Probab=98.26 E-value=0.00077 Score=85.28 Aligned_cols=138 Identities=16% Similarity=0.059 Sum_probs=85.4
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCC--hhhHH-H---hhCCCCcEEEEeCCCCC-----C-----------CCCCeEEC
Q 001939 210 RKEVRKELGIEDDVKLLILNFGGQPA--GWKLK-E---EYLPSGWKCLVCGASDS-----Q-----------LPPNFIKL 267 (993)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~G~~~~--~~~ll-~---~l~~~~~~~vv~G~~~~-----~-----------l~~nv~~~ 267 (993)
+..+++.+|++.+...+++..|.... +..++ . .++..+.+++++|.++. . .+++|.+.
T Consensus 826 k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~ 905 (1036)
T PLN02316 826 KEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLC 905 (1036)
T ss_pred HHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEE
Confidence 34578889987423345666777654 33333 2 23445677888886531 0 14567765
Q ss_pred CCCCC-HH-HHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHH-------HHHHHcCcEEEEecCCC
Q 001939 268 PKDAY-TP-DFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLR-------NMLEFYQGGVEMIRRDL 334 (993)
Q Consensus 268 ~~~~~-~p-dlL~~adl~It~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na-------~~l~~~G~g~~l~~~~~ 334 (993)
+..+. +. .+++.||+|+..+ =..+.+|||++|+|.|+....+..|.-... +.....+.|..++..+
T Consensus 906 g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d- 984 (1036)
T PLN02316 906 LTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGAD- 984 (1036)
T ss_pred ecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCC-
Confidence 44433 32 6899999999643 237999999999999987654444431110 0000125688887555
Q ss_pred ChhhHHHHHHHHHhC
Q 001939 335 LTGHWKPYLERAISL 349 (993)
Q Consensus 335 ~~~~l~~~l~~ll~~ 349 (993)
++.|..+|.+++..
T Consensus 985 -~~aLa~AL~raL~~ 998 (1036)
T PLN02316 985 -AAGVDYALNRAISA 998 (1036)
T ss_pred -HHHHHHHHHHHHhh
Confidence 57888999998865
No 162
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.26 E-value=8e-05 Score=86.76 Aligned_cols=95 Identities=15% Similarity=0.116 Sum_probs=71.0
Q ss_pred CCcEEEEeCCCCCC------CCCCeEECCCCCCHHHHHhhcCEEEec----CCh-hHHHHHHHcCCcEEEEeCCCCCChH
Q 001939 246 SGWKCLVCGASDSQ------LPPNFIKLPKDAYTPDFMAASDCMLGK----IGY-GTVSEALAYKLPFVFVRRDYFNEEP 314 (993)
Q Consensus 246 ~~~~~vv~G~~~~~------l~~nv~~~~~~~~~pdlL~~adl~It~----~G~-~Tv~Eal~~GvP~l~ip~~~~~EQ~ 314 (993)
+++.++++|..... ..+||++.|++++++.+|+.||++|.. .|. +.+.|||++|+|+|+.+.. .+.
T Consensus 258 p~~~l~ivG~g~~~~~~~l~~~~~V~~~G~v~~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~--~~~- 334 (397)
T TIGR03087 258 PAAEFYIVGAKPSPAVRALAALPGVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEA--AEG- 334 (397)
T ss_pred CCcEEEEECCCChHHHHHhccCCCeEEeeecCCHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCcc--ccc-
Confidence 57888888876532 357899999999999999999999942 243 3699999999999998742 221
Q ss_pred HHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 315 FLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 315 ~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
..+..|.|+.+. . +++.|.++|.++++++
T Consensus 335 ----i~~~~~~g~lv~-~--~~~~la~ai~~ll~~~ 363 (397)
T TIGR03087 335 ----IDALPGAELLVA-A--DPADFAAAILALLANP 363 (397)
T ss_pred ----ccccCCcceEeC-C--CHHHHHHHHHHHHcCH
Confidence 112346677764 3 4689999999999776
No 163
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.23 E-value=0.0001 Score=88.08 Aligned_cols=137 Identities=20% Similarity=0.133 Sum_probs=86.1
Q ss_pred HHHHHHhCCC--CCCcEEEEEcCCCCCh--hh-HHH---hhCCCCcEEEEeCCCCCC-----------CCCCeEEC-CCC
Q 001939 211 KEVRKELGIE--DDVKLLILNFGGQPAG--WK-LKE---EYLPSGWKCLVCGASDSQ-----------LPPNFIKL-PKD 270 (993)
Q Consensus 211 ~~~r~~l~~~--~~~~~Vlvs~G~~~~~--~~-ll~---~l~~~~~~~vv~G~~~~~-----------l~~nv~~~-~~~ 270 (993)
..+++.++++ ++.+ ++++.|..... .. +++ .+...++++++.|...+. .+.|+.++ ++.
T Consensus 282 ~~l~~~~g~~~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~ 360 (476)
T cd03791 282 AALQEELGLPVDPDAP-LFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYD 360 (476)
T ss_pred HHHHHHcCCCcCCCCC-EEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 4567888874 3444 56777776642 22 222 233345778888876421 35787754 554
Q ss_pred CC-HHHHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHH
Q 001939 271 AY-TPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLER 345 (993)
Q Consensus 271 ~~-~pdlL~~adl~It~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ 345 (993)
.. ++.+++.||+++..+ -..+.+||+++|+|+|+....+..|.-.+...-.+.|.|+.++..+ ++.+.++|.+
T Consensus 361 ~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~--~~~l~~~i~~ 438 (476)
T cd03791 361 EALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYN--ADALLAALRR 438 (476)
T ss_pred HHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCC--HHHHHHHHHH
Confidence 33 347889999999643 2258899999999999977655554311110011244798887655 5788999999
Q ss_pred HHhCC
Q 001939 346 AISLK 350 (993)
Q Consensus 346 ll~~~ 350 (993)
++...
T Consensus 439 ~l~~~ 443 (476)
T cd03791 439 ALALY 443 (476)
T ss_pred HHHHH
Confidence 87643
No 164
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.22 E-value=7.2e-05 Score=85.36 Aligned_cols=117 Identities=17% Similarity=0.078 Sum_probs=83.5
Q ss_pred EEEEcCCCCCh--h-hHHHhhCCCCcEEEEeCCCCCC------CCCCeEECCCCCC--HHHHHhhcCEEEecC--Ch-hH
Q 001939 226 LILNFGGQPAG--W-KLKEEYLPSGWKCLVCGASDSQ------LPPNFIKLPKDAY--TPDFMAASDCMLGKI--GY-GT 291 (993)
Q Consensus 226 Vlvs~G~~~~~--~-~ll~~l~~~~~~~vv~G~~~~~------l~~nv~~~~~~~~--~pdlL~~adl~It~~--G~-~T 291 (993)
.+++.|..... . .+++.+....+.++++|..... ..+||+++|+++. ++++|+.||++|..+ |+ .+
T Consensus 197 ~il~~G~~~~~K~~~~li~a~~~~~~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~~g~~ 276 (351)
T cd03804 197 YYLSVGRLVPYKRIDLAIEAFNKLGKRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFLFPAEEDFGIV 276 (351)
T ss_pred EEEEEEcCccccChHHHHHHHHHCCCcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEEECCcCCCCch
Confidence 35567776653 2 2344332222777888876531 5789999999875 779999999999532 32 57
Q ss_pred HHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 292 VSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 292 v~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
+.|||++|+|+|+.......|. ++....|+.++..+ ++.+.++|.++++++
T Consensus 277 ~~Eama~G~Pvi~~~~~~~~e~------i~~~~~G~~~~~~~--~~~la~~i~~l~~~~ 327 (351)
T cd03804 277 PVEAMASGTPVIAYGKGGALET------VIDGVTGILFEEQT--VESLAAAVERFEKNE 327 (351)
T ss_pred HHHHHHcCCCEEEeCCCCCcce------eeCCCCEEEeCCCC--HHHHHHHHHHHHhCc
Confidence 8899999999999876554444 55667898887655 577999999999887
No 165
>PLN02939 transferase, transferring glycosyl groups
Probab=98.19 E-value=0.0012 Score=82.32 Aligned_cols=137 Identities=19% Similarity=0.164 Sum_probs=87.5
Q ss_pred hHHHHHHhCCCCC--CcEEEEEcCCCCCh--hhH-HH---hhCCCCcEEEEeCCCCC-----C---------CCCCeEEC
Q 001939 210 RKEVRKELGIEDD--VKLLILNFGGQPAG--WKL-KE---EYLPSGWKCLVCGASDS-----Q---------LPPNFIKL 267 (993)
Q Consensus 210 ~~~~r~~l~~~~~--~~~Vlvs~G~~~~~--~~l-l~---~l~~~~~~~vv~G~~~~-----~---------l~~nv~~~ 267 (993)
+..+++.+|++.+ ...++.+.|..... ..+ +. .+...+..++++|.++. . ..++|.+.
T Consensus 763 K~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~Fl 842 (977)
T PLN02939 763 KAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLI 842 (977)
T ss_pred hHHHHHHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEE
Confidence 4568888998742 23456777776642 333 22 23345678888887642 1 24678887
Q ss_pred CCCCCH--HHHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHH--HHHH-HHcCcEEEEecCCCChhh
Q 001939 268 PKDAYT--PDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFL--RNML-EFYQGGVEMIRRDLLTGH 338 (993)
Q Consensus 268 ~~~~~~--pdlL~~adl~It~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~n--a~~l-~~~G~g~~l~~~~~~~~~ 338 (993)
++.++. +.+++.||+||..+ -..+++|||++|+|.|+....+..|.-.+ -..+ +..+.|..+...+ ++.
T Consensus 843 G~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D--~ea 920 (977)
T PLN02939 843 LKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPD--EQG 920 (977)
T ss_pred eccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCC--HHH
Confidence 766653 47999999999743 23689999999999998765444443110 0001 1235687777654 577
Q ss_pred HHHHHHHHHh
Q 001939 339 WKPYLERAIS 348 (993)
Q Consensus 339 l~~~l~~ll~ 348 (993)
+..+|.+++.
T Consensus 921 La~AL~rAL~ 930 (977)
T PLN02939 921 LNSALERAFN 930 (977)
T ss_pred HHHHHHHHHH
Confidence 8888888764
No 166
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.16 E-value=0.00065 Score=79.81 Aligned_cols=118 Identities=14% Similarity=0.024 Sum_probs=77.1
Q ss_pred cEEEEEcCCCCCh---hhHHHh---h---CC----CCcEEEEeCCCCC-----------------CCCCCeEECCCCC--
Q 001939 224 KLLILNFGGQPAG---WKLKEE---Y---LP----SGWKCLVCGASDS-----------------QLPPNFIKLPKDA-- 271 (993)
Q Consensus 224 ~~Vlvs~G~~~~~---~~ll~~---l---~~----~~~~~vv~G~~~~-----------------~l~~nv~~~~~~~-- 271 (993)
..++++.|..... ..++++ + .+ ++++++++|.... .+.++|+++++.+
T Consensus 237 ~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~ 316 (419)
T cd03806 237 ENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFE 316 (419)
T ss_pred CcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHH
Confidence 4567788865542 122332 2 12 2478888886421 0357899988764
Q ss_pred CHHHHHhhcCEEEecC---Ch-hHHHHHHHcCCcEEEEeCCCCCChHHHHHHHH---HcCcEEEEecCCCChhhHHHHHH
Q 001939 272 YTPDFMAASDCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLE---FYQGGVEMIRRDLLTGHWKPYLE 344 (993)
Q Consensus 272 ~~pdlL~~adl~It~~---G~-~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~---~~G~g~~l~~~~~~~~~l~~~l~ 344 (993)
.++.+|+.||++|... |+ .++.|||++|+|+|+....+..+. .++ ....|+... +++.+.++|.
T Consensus 317 ~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~-----iv~~~~~g~~G~l~~----d~~~la~ai~ 387 (419)
T cd03806 317 ELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLD-----IVVPWDGGPTGFLAS----TAEEYAEAIE 387 (419)
T ss_pred HHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCchh-----eeeccCCCCceEEeC----CHHHHHHHHH
Confidence 4668999999998632 32 488999999999999763221111 122 345677652 4789999999
Q ss_pred HHHhCC
Q 001939 345 RAISLK 350 (993)
Q Consensus 345 ~ll~~~ 350 (993)
++++++
T Consensus 388 ~ll~~~ 393 (419)
T cd03806 388 KILSLS 393 (419)
T ss_pred HHHhCC
Confidence 999876
No 167
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.12 E-value=7.3e-05 Score=89.36 Aligned_cols=221 Identities=19% Similarity=0.215 Sum_probs=122.9
Q ss_pred HHHHHHHhcCCCcEEEECC-Cc---h--HHHHHHHcCCcEEEE--ecCchhHHHHHHHhhccc-chHH-----HHHHHHh
Q 001939 108 KDEVEWLNSIKADLVVSDV-VP---V--ACRAAADAGIRSVCV--TNFSWDFIYAEYVMAAGH-HHRS-----IVWQIAE 173 (993)
Q Consensus 108 ~~~~~~L~~~kPDlVVsD~-~~---~--a~laA~~~gIP~V~i--~~~~~~~~~~~y~~~~~~-~~~~-----i~~~l~~ 173 (993)
.+..+.|.+++||+|+... .. . |..+|++++ |+|.+ |++. .|....+. .... +.+++..
T Consensus 424 gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~-PVVasyHTny~------eYl~~y~~g~L~~~llk~l~~~v~r 496 (794)
T PLN02501 424 GDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYL------EYIKREKNGALQAFFVKHINNWVTR 496 (794)
T ss_pred HHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcC-CeEEEEeCCcH------HHHhHhcchhHHHHHHHHHHHHHHH
Confidence 4557788999999999765 22 2 555888999 88765 5543 22221110 0111 1112333
Q ss_pred hccccceeeecCCCC-CCCCCCceee--cCcccccCCcC-hHHHHHHhCCCCCCcEEEEEcCCCCCh--h-hHHHhh---
Q 001939 174 DYSHCEFLIRLPGYC-PMPAFRDVID--VPLVVRRLHKS-RKEVRKELGIEDDVKLLILNFGGQPAG--W-KLKEEY--- 243 (993)
Q Consensus 174 ~y~~~d~ll~~p~~~-~~p~~~~v~~--vp~~~~~~~~~-~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~-~ll~~l--- 243 (993)
.| |+..+.+.... ..+. .++. .|+......+. +...++.++.+...+. +++.|..... . .+++.+
T Consensus 497 ~h--cD~VIaPS~atq~L~~--~vI~nVnGVDte~F~P~~r~~~~r~lgi~~~~kg-iLfVGRLa~EKGld~LLeAla~L 571 (794)
T PLN02501 497 AY--CHKVLRLSAATQDLPK--SVICNVHGVNPKFLKIGEKVAEERELGQQAFSKG-AYFLGKMVWAKGYRELIDLLAKH 571 (794)
T ss_pred hh--CCEEEcCCHHHHHhcc--cceeecccccccccCCcchhHHHHhcCCccccCc-eEEEEcccccCCHHHHHHHHHHH
Confidence 33 66555432110 0111 1111 24443322221 2222345555422222 3345665542 2 333332
Q ss_pred C--CCCcEEEEeCCCCCC---------CCCCeEECCCCCCHHHHHhhcCEEEecC---C-hhHHHHHHHcCCcEEEEeCC
Q 001939 244 L--PSGWKCLVCGASDSQ---------LPPNFIKLPKDAYTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRD 308 (993)
Q Consensus 244 ~--~~~~~~vv~G~~~~~---------l~~nv~~~~~~~~~pdlL~~adl~It~~---G-~~Tv~Eal~~GvP~l~ip~~ 308 (993)
. .++++++++|.++.. +.-++.++++.++.+++|+.+|+||..+ | .+++.|||++|+|+|+...+
T Consensus 572 ~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~p 651 (794)
T PLN02501 572 KNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADHP 651 (794)
T ss_pred HhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEecCC
Confidence 1 246788888877532 2335778888888888999999999643 2 35899999999999998864
Q ss_pred CCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCC
Q 001939 309 YFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (993)
Q Consensus 309 ~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (993)
. .+. +...+.|... . +.+.+.++|.+++.++.
T Consensus 652 G-~e~------V~~g~nGll~--~--D~EafAeAI~~LLsd~~ 683 (794)
T PLN02501 652 S-NEF------FRSFPNCLTY--K--TSEDFVAKVKEALANEP 683 (794)
T ss_pred C-Cce------EeecCCeEec--C--CHHHHHHHHHHHHhCch
Confidence 3 221 2222333322 2 36789999999998773
No 168
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=98.08 E-value=0.00036 Score=76.91 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCC
Q 001939 610 AAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPC 689 (993)
Q Consensus 610 ~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~ 689 (993)
.+.++.++..+-+++|.. ..+.|...++.|.++||+||||...|++.|++.+++..++..+|.++|..+- -|
T Consensus 71 ~~k~~~~ld~~R~~~~~~--~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~gS------GS 142 (329)
T COG3407 71 NEKARRVLDRFRKEYGIS--FKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLGS------GS 142 (329)
T ss_pred HHHHHHHHHHHHHhhccc--ceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHhc------cc
Confidence 466677777655456654 4799999999999999999999999999999999999999999999998643 23
Q ss_pred CcchhhHhhcccc
Q 001939 690 GVMDQMASACGEA 702 (993)
Q Consensus 690 G~mDq~~~~~Gg~ 702 (993)
+ .-+++||.
T Consensus 143 a----~RS~~Gg~ 151 (329)
T COG3407 143 A----SRSIFGGF 151 (329)
T ss_pred h----hhhhcCCe
Confidence 3 24899996
No 169
>PLN00142 sucrose synthase
Probab=98.02 E-value=0.0015 Score=80.85 Aligned_cols=125 Identities=15% Similarity=0.128 Sum_probs=75.1
Q ss_pred HHHhCC--CCCCcEEEEEcCCCCCh--h-hHHHhh-----CCCCcEEEEeCCC-CC----------------------CC
Q 001939 214 RKELGI--EDDVKLLILNFGGQPAG--W-KLKEEY-----LPSGWKCLVCGAS-DS----------------------QL 260 (993)
Q Consensus 214 r~~l~~--~~~~~~Vlvs~G~~~~~--~-~ll~~l-----~~~~~~~vv~G~~-~~----------------------~l 260 (993)
++.++. +++++ ++++.|..... . .+++.+ ..+++.++++|.. .+ .+
T Consensus 562 ~e~lg~l~~~~kp-vIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL 640 (815)
T PLN00142 562 DEHIGYLKDRKKP-IIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNL 640 (815)
T ss_pred HHHhCCccCCCCc-EEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCC
Confidence 344554 33444 56788877653 2 233332 1245677776653 10 03
Q ss_pred CCCeEECCCCCC---HH---HHHh-hcCEEEecC---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE
Q 001939 261 PPNFIKLPKDAY---TP---DFMA-ASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM 329 (993)
Q Consensus 261 ~~nv~~~~~~~~---~p---dlL~-~adl~It~~---G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l 329 (993)
.++|+++++..+ .+ .+++ ++|+||..+ | ..++.||++||+|+|+....+ ..+.++....|..+
T Consensus 641 ~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG------~~EIV~dG~tG~LV 714 (815)
T PLN00142 641 KGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGG------PAEIIVDGVSGFHI 714 (815)
T ss_pred CCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCC------HHHHhcCCCcEEEe
Confidence 467887775422 23 3344 479999753 3 258999999999999976433 23445555679998
Q ss_pred ecCCCChhhHHHHHHHHH
Q 001939 330 IRRDLLTGHWKPYLERAI 347 (993)
Q Consensus 330 ~~~~~~~~~l~~~l~~ll 347 (993)
+..+ ++.+.++|.+++
T Consensus 715 ~P~D--~eaLA~aI~~lL 730 (815)
T PLN00142 715 DPYH--GDEAANKIADFF 730 (815)
T ss_pred CCCC--HHHHHHHHHHHH
Confidence 8766 466777776544
No 170
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.98 E-value=0.00051 Score=79.38 Aligned_cols=114 Identities=21% Similarity=0.229 Sum_probs=76.0
Q ss_pred EEEEEcCCCCCh--hhHHHhh--CCCCcEEEEeCCCCC--C---C--CCCeEECCCCC--CHHHHHhhcCEEEecC----
Q 001939 225 LLILNFGGQPAG--WKLKEEY--LPSGWKCLVCGASDS--Q---L--PPNFIKLPKDA--YTPDFMAASDCMLGKI---- 287 (993)
Q Consensus 225 ~Vlvs~G~~~~~--~~ll~~l--~~~~~~~vv~G~~~~--~---l--~~nv~~~~~~~--~~pdlL~~adl~It~~---- 287 (993)
.+++..|+.... .+++.++ ..+++.++++|.... . + .+||+++|+.+ .+|.+|+++|++|...
T Consensus 206 ~~i~y~G~l~~~~d~~ll~~la~~~p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~ 285 (373)
T cd04950 206 PVIGYYGAIAEWLDLELLEALAKARPDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNE 285 (373)
T ss_pred CEEEEEeccccccCHHHHHHHHHHCCCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccch
Confidence 456677877653 3444443 236788898988521 1 2 37999999884 6889999999998531
Q ss_pred ----C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 288 ----G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 288 ----G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
+ .+.+.|++++|+|+|..+.+ | ..+..+ +..+... ++++|.++|++++.++
T Consensus 286 ~~~~~~P~Kl~EylA~G~PVVat~~~---~------~~~~~~-~~~~~~~--d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 286 LTRATSPLKLFEYLAAGKPVVATPLP---E------VRRYED-EVVLIAD--DPEEFVAAIEKALLED 341 (373)
T ss_pred hhhcCCcchHHHHhccCCCEEecCcH---H------HHhhcC-cEEEeCC--CHHHHHHHHHHHHhcC
Confidence 2 24689999999999987632 1 122233 3333333 4689999999977654
No 171
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.98 E-value=4.8e-05 Score=86.68 Aligned_cols=135 Identities=16% Similarity=0.107 Sum_probs=77.0
Q ss_pred CCCcEEEEEcCCCCC---h---hh---HHHhhCC-CCcEEEEeCCCCCC-----------CCCCeEECCCCCCH--HHHH
Q 001939 221 DDVKLLILNFGGQPA---G---WK---LKEEYLP-SGWKCLVCGASDSQ-----------LPPNFIKLPKDAYT--PDFM 277 (993)
Q Consensus 221 ~~~~~Vlvs~G~~~~---~---~~---ll~~l~~-~~~~~vv~G~~~~~-----------l~~nv~~~~~~~~~--pdlL 277 (993)
..++++++++=.... + .. .+.++.. .++.+++...+.+. + +|+++++...+. -.+|
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~-~~v~~~~~l~~~~~l~ll 256 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKY-DNVRLIEPLGYEEYLSLL 256 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT--TTEEEE----HHHHHHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhccc-CCEEEECCCCHHHHHHHH
Confidence 467889998732211 1 11 2223322 46767766654431 4 588886544332 2788
Q ss_pred hhcCEEEecCChhHHH-HHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCc---
Q 001939 278 AASDCMLGKIGYGTVS-EALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCY--- 353 (993)
Q Consensus 278 ~~adl~It~~G~~Tv~-Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~--- 353 (993)
.+|+++||.+| +++ ||.++|+|+|.+. ...| .+.....|..+.+. .+++.+..++++++.++..+
T Consensus 257 ~~a~~vvgdSs--GI~eEa~~lg~P~v~iR--~~ge----Rqe~r~~~~nvlv~---~~~~~I~~ai~~~l~~~~~~~~~ 325 (346)
T PF02350_consen 257 KNADLVVGDSS--GIQEEAPSLGKPVVNIR--DSGE----RQEGRERGSNVLVG---TDPEAIIQAIEKALSDKDFYRKL 325 (346)
T ss_dssp HHESEEEESSH--HHHHHGGGGT--EEECS--SS-S-----HHHHHTTSEEEET---SSHHHHHHHHHHHHH-HHHHHHH
T ss_pred hcceEEEEcCc--cHHHHHHHhCCeEEEec--CCCC----CHHHHhhcceEEeC---CCHHHHHHHHHHHHhChHHHHhh
Confidence 99999999999 666 9999999999996 2233 34466777787744 34688999999998762111
Q ss_pred ------cCCCCHHHHHHHHH
Q 001939 354 ------EGGINGGEVAAHIL 367 (993)
Q Consensus 354 ------~~~~~ga~~~a~~i 367 (993)
-...+.++++++.|
T Consensus 326 ~~~~npYgdG~as~rI~~~L 345 (346)
T PF02350_consen 326 KNRPNPYGDGNASERIVEIL 345 (346)
T ss_dssp HCS--TT-SS-HHHHHHHHH
T ss_pred ccCCCCCCCCcHHHHHHHhh
Confidence 13556666666654
No 172
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.97 E-value=0.00083 Score=77.35 Aligned_cols=219 Identities=16% Similarity=0.119 Sum_probs=114.7
Q ss_pred hHHHHHHHHhcCCCcEEEECC----CchHHHHHHHcCCcEEEE--ecCchhHHHHHHHhhcccchHHHHHHHHhh-ccc-
Q 001939 106 ILKDEVEWLNSIKADLVVSDV----VPVACRAAADAGIRSVCV--TNFSWDFIYAEYVMAAGHHHRSIVWQIAED-YSH- 177 (993)
Q Consensus 106 ~l~~~~~~L~~~kPDlVVsD~----~~~a~laA~~~gIP~V~i--~~~~~~~~~~~y~~~~~~~~~~i~~~l~~~-y~~- 177 (993)
.+....+++++++||+|++.. ..++.++|..++||++.+ .+.++.. .... ...+..++... +..
T Consensus 81 ~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs~~~-~eE~-------~r~~i~~la~l~f~~t 152 (365)
T TIGR03568 81 TIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVTEGA-IDES-------IRHAITKLSHLHFVAT 152 (365)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccCCCC-chHH-------HHHHHHHHHhhccCCC
Confidence 345557788999999999654 336788899999999976 2222210 0000 01111111110 000
Q ss_pred ---cceeeecCCCCCCCCCCceeecCcccc---cCCcChHHHHHHhCCCCCCcEEEEEcCCCC--Ch------hhHHHhh
Q 001939 178 ---CEFLIRLPGYCPMPAFRDVIDVPLVVR---RLHKSRKEVRKELGIEDDVKLLILNFGGQP--AG------WKLKEEY 243 (993)
Q Consensus 178 ---~d~ll~~p~~~~~p~~~~v~~vp~~~~---~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~--~~------~~ll~~l 243 (993)
.+.++.. ...+....+++.+.+.. .....++++.+.+++++++++|++.+=... .. ..+++.+
T Consensus 153 ~~~~~~L~~e---g~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L 229 (365)
T TIGR03568 153 EEYRQRVIQM---GEDPDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKAL 229 (365)
T ss_pred HHHHHHHHHc---CCCCCcEEEECCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHH
Confidence 0011110 00011122344444322 112234667778887655678777774321 11 1233333
Q ss_pred CC--CCcEEEEeC--CCCCC--------C--CCCeEECCCCCC--HHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeC
Q 001939 244 LP--SGWKCLVCG--ASDSQ--------L--PPNFIKLPKDAY--TPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRR 307 (993)
Q Consensus 244 ~~--~~~~~vv~G--~~~~~--------l--~~nv~~~~~~~~--~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~ 307 (993)
.. ..+.++... +.... . .+|+++.+..++ +..+|.+|+++||.++.+. .||.++|+|+|.+.
T Consensus 230 ~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdSSggi-~EA~~lg~Pvv~l~- 307 (365)
T TIGR03568 230 DELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNSSSGI-IEAPSFGVPTINIG- 307 (365)
T ss_pred HHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEEEcChhHH-HhhhhcCCCEEeec-
Confidence 22 233333222 11110 1 468888765543 3478899999999886344 99999999999886
Q ss_pred CCCCChHHHHHHHHHcCcEEE-EecCCCChhhHHHHHHHHHh
Q 001939 308 DYFNEEPFLRNMLEFYQGGVE-MIRRDLLTGHWKPYLERAIS 348 (993)
Q Consensus 308 ~~~~EQ~~na~~l~~~G~g~~-l~~~~~~~~~l~~~l~~ll~ 348 (993)
..+| ....|..+. +. .+++.+.+++.++++
T Consensus 308 -~R~e-------~~~~g~nvl~vg---~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 308 -TRQK-------GRLRADSVIDVD---PDKEEIVKAIEKLLD 338 (365)
T ss_pred -CCch-------hhhhcCeEEEeC---CCHHHHHHHHHHHhC
Confidence 2222 223444433 42 235788888888553
No 173
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=97.87 E-value=0.00046 Score=73.75 Aligned_cols=62 Identities=26% Similarity=0.389 Sum_probs=53.0
Q ss_pred CEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhcccc
Q 001939 631 SISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEA 702 (993)
Q Consensus 631 g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~ 702 (993)
.+.|.-.++.|..+||.||||=-.|++.||+.+++++.++++|..+|...- |..|- ++|||.
T Consensus 105 ~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~GS----GSACR------Sl~GG~ 166 (395)
T KOG2833|consen 105 KLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQGS----GSACR------SLYGGF 166 (395)
T ss_pred eEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhccC----chhhh------hhhcce
Confidence 456666779999999999999999999999999999999999999998632 44443 899995
No 174
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.86 E-value=0.00049 Score=82.28 Aligned_cols=119 Identities=14% Similarity=0.046 Sum_probs=82.8
Q ss_pred CcEEEEEcCCCCCh--h-hHHHh---hC--CCCcEEEEeCCCCCC---------------CCCCeEECCCCCCHHHHHhh
Q 001939 223 VKLLILNFGGQPAG--W-KLKEE---YL--PSGWKCLVCGASDSQ---------------LPPNFIKLPKDAYTPDFMAA 279 (993)
Q Consensus 223 ~~~Vlvs~G~~~~~--~-~ll~~---l~--~~~~~~vv~G~~~~~---------------l~~nv~~~~~~~~~pdlL~~ 279 (993)
.+.+++..|..... . .+++. +. .+++.++++|..... +.+||+++| ...++++|+.
T Consensus 292 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~ 370 (475)
T cd03813 292 EPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPK 370 (475)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHh
Confidence 34567777876642 2 23332 21 256788888876310 468999999 5678999999
Q ss_pred cCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc------CcEEEEecCCCChhhHHHHHHHHHhC
Q 001939 280 SDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY------QGGVEMIRRDLLTGHWKPYLERAISL 349 (993)
Q Consensus 280 adl~It~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~------G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (993)
+|++|..+ -.+++.||+++|+|+|+...... .+.++.. ..|..++..+ ++.+.++|.+++++
T Consensus 371 aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~------~elv~~~~~~~~g~~G~lv~~~d--~~~la~ai~~ll~~ 442 (475)
T cd03813 371 LDVLVLTSISEGQPLVILEAMAAGIPVVATDVGSC------RELIEGADDEALGPAGEVVPPAD--PEALARAILRLLKD 442 (475)
T ss_pred CCEEEeCchhhcCChHHHHHHHcCCCEEECCCCCh------HHHhcCCcccccCCceEEECCCC--HHHHHHHHHHHhcC
Confidence 99999643 33689999999999999653322 3334442 3688887655 57899999999987
Q ss_pred C
Q 001939 350 K 350 (993)
Q Consensus 350 ~ 350 (993)
+
T Consensus 443 ~ 443 (475)
T cd03813 443 P 443 (475)
T ss_pred H
Confidence 6
No 175
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.81 E-value=3.2e-05 Score=78.60 Aligned_cols=132 Identities=18% Similarity=0.141 Sum_probs=92.1
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCCh--h-hHHH---hhC---CCCcEEEEeCCCCC-----------CCCCCeEECCC
Q 001939 210 RKEVRKELGIEDDVKLLILNFGGQPAG--W-KLKE---EYL---PSGWKCLVCGASDS-----------QLPPNFIKLPK 269 (993)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~-~ll~---~l~---~~~~~~vv~G~~~~-----------~l~~nv~~~~~ 269 (993)
++.++...+.+ +.+.++++.|+.... . .++. .+. .+++.++++|.... .+..+++++++
T Consensus 2 ~~~~~~~~~~~-~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (172)
T PF00534_consen 2 KDKLREKLKIP-DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGY 80 (172)
T ss_dssp HHHHHHHTTT--TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEES
T ss_pred hHHHHHHcCCC-CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccccc
Confidence 45667777765 455667777877653 1 2222 221 46778889994331 14678999888
Q ss_pred CC--CHHHHHhhcCEEEec----CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHH
Q 001939 270 DA--YTPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYL 343 (993)
Q Consensus 270 ~~--~~pdlL~~adl~It~----~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l 343 (993)
.. .+.+++..||++|.. +...++.||+++|+|+|+...+ .+.+.+.....|..++.. +.+.+.++|
T Consensus 81 ~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~------~~~e~~~~~~~g~~~~~~--~~~~l~~~i 152 (172)
T PF00534_consen 81 VPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIG------GNNEIINDGVNGFLFDPN--DIEELADAI 152 (172)
T ss_dssp HSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESST------HHHHHSGTTTSEEEESTT--SHHHHHHHH
T ss_pred ccccccccccccceeccccccccccccccccccccccceeecccc------CCceeeccccceEEeCCC--CHHHHHHHH
Confidence 76 667899999999975 4557999999999999987522 345566677779999876 468999999
Q ss_pred HHHHhCC
Q 001939 344 ERAISLK 350 (993)
Q Consensus 344 ~~ll~~~ 350 (993)
.+++.++
T Consensus 153 ~~~l~~~ 159 (172)
T PF00534_consen 153 EKLLNDP 159 (172)
T ss_dssp HHHHHHH
T ss_pred HHHHCCH
Confidence 9999776
No 176
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.74 E-value=0.0097 Score=64.49 Aligned_cols=311 Identities=15% Similarity=0.098 Sum_probs=150.9
Q ss_pred EEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHH-HH
Q 001939 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLE-KY 95 (993)
Q Consensus 17 ~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~ 95 (993)
++.+-+.. .-|+.-...+.+.|.++||+|.+.|-....+ ....+.-++.+..++. .|. . ++. ++
T Consensus 2 kVwiDI~n--~~hvhfFk~lI~elekkG~ev~iT~rd~~~v-~~LLd~ygf~~~~Igk-~g~-----~------tl~~Kl 66 (346)
T COG1817 2 KVWIDIGN--PPHVHFFKNLIWELEKKGHEVLITCRDFGVV-TELLDLYGFPYKSIGK-HGG-----V------TLKEKL 66 (346)
T ss_pred eEEEEcCC--cchhhHHHHHHHHHHhCCeEEEEEEeecCcH-HHHHHHhCCCeEeecc-cCC-----c------cHHHHH
Confidence 45444432 4688889999999999999999987653211 1111111122222211 110 0 111 33
Q ss_pred HHHhhccHHHhHHHHHHHHhcCCCcEEEECCCchHHHHHHHcCCcEEEEecCchh-------HHHHHHHhhcccchHHHH
Q 001939 96 SETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWD-------FIYAEYVMAAGHHHRSIV 168 (993)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~a~laA~~~gIP~V~i~~~~~~-------~~~~~y~~~~~~~~~~i~ 168 (993)
..++ .+...+.+++.+++||+.+.-+.+-....+.-+|+|.+.+.|.-.. ..+..++.. |...+.
T Consensus 67 ~~~~-----eR~~~L~ki~~~~kpdv~i~~~s~~l~rvafgLg~psIi~~D~ehA~~qnkl~~Pla~~ii~-P~~~~~-- 138 (346)
T COG1817 67 LESA-----ERVYKLSKIIAEFKPDVAIGKHSPELPRVAFGLGIPSIIFVDNEHAEAQNKLTLPLADVIIT-PEAIDE-- 138 (346)
T ss_pred HHHH-----HHHHHHHHHHhhcCCceEeecCCcchhhHHhhcCCceEEecCChhHHHHhhcchhhhhheec-ccccch--
Confidence 3322 1233446778999999999977877888899999999988442211 000000000 000000
Q ss_pred HHHHhhccccceeeecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCCh-------hhHHH
Q 001939 169 WQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG-------WKLKE 241 (993)
Q Consensus 169 ~~l~~~y~~~d~ll~~p~~~~~p~~~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-------~~ll~ 241 (993)
+.+.........+... ..+-.+-++.. ..++ .++.+.+|+..+.++|++=.=+.++. ..++.
T Consensus 139 ~~~~~~G~~p~~i~~~---------~giae~~~v~~-f~pd-~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~ 207 (346)
T COG1817 139 EELLDFGADPNKISGY---------NGIAELANVYG-FVPD-PEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLP 207 (346)
T ss_pred HHHHHhCCCccceecc---------cceeEEeeccc-CCCC-HHHHHHcCCCCCCceEEEeeccccceeeccccchhhHH
Confidence 0011111010011100 00101111111 2223 35667899987778887754443331 11222
Q ss_pred ----hhCCCCcEEEEeCCCCCC--CC---CCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCC
Q 001939 242 ----EYLPSGWKCLVCGASDSQ--LP---PNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNE 312 (993)
Q Consensus 242 ----~l~~~~~~~vv~G~~~~~--l~---~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~E 312 (993)
.+..-+ ++++-+..++ +- .|+.+-.-..+.-+||--|+++|+.|| .--.||+..|+|.|..- ++ .
T Consensus 208 ~li~~l~k~g--iV~ipr~~~~~eife~~~n~i~pk~~vD~l~Llyya~lvig~gg-TMarEaAlLGtpaIs~~-pG--k 281 (346)
T COG1817 208 DLIKELKKYG--IVLIPREKEQAEIFEGYRNIIIPKKAVDTLSLLYYATLVIGAGG-TMAREAALLGTPAISCY-PG--K 281 (346)
T ss_pred HHHHHHHhCc--EEEecCchhHHHHHhhhccccCCcccccHHHHHhhhheeecCCc-hHHHHHHHhCCceEEec-CC--c
Confidence 332222 3444333332 21 222221111122258888999998555 66789999999999975 22 2
Q ss_pred hHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc----CCCCHHHHHHHHHHHHH
Q 001939 313 EPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE----GGINGGEVAAHILQETA 371 (993)
Q Consensus 313 Q~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~----~~~~ga~~~a~~i~~~~ 371 (993)
-...-+++.+.|.- ....+.. +.|.-++ +++.++...+ ...+-.+.+.+.+++.+
T Consensus 282 ll~vdk~lie~G~~--~~s~~~~-~~~~~a~-~~l~~~~~kK~~~~k~e~~~~~ii~~ve~~~ 340 (346)
T COG1817 282 LLAVDKYLIEKGLL--YHSTDEI-AIVEYAV-RNLKYRRLKKTGVLKLEDPTRLIIDVVEEML 340 (346)
T ss_pred cccccHHHHhcCce--eecCCHH-HHHHHHH-HHhhchhhccccccccccHHHHHHHHHHHHh
Confidence 22333677787654 4433321 3444344 4443432111 33444555555555554
No 177
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.69 E-value=0.00067 Score=78.00 Aligned_cols=120 Identities=13% Similarity=0.012 Sum_probs=84.9
Q ss_pred cEEEEEcCCCCCh---hhHHHh---hC--CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCEEE
Q 001939 224 KLLILNFGGQPAG---WKLKEE---YL--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDCML 284 (993)
Q Consensus 224 ~~Vlvs~G~~~~~---~~ll~~---l~--~~~~~~vv~G~~~~~-----------l~~nv~~~~~~~~~pdlL~~adl~I 284 (993)
+..+++.|..... ..+++. +. .+++.++++|..... +++++.+.|+.+.+.++|+.||++|
T Consensus 204 ~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v 283 (372)
T cd04949 204 PHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSL 283 (372)
T ss_pred CCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEE
Confidence 3455677766543 123332 21 256777777765421 4678999998888899999999999
Q ss_pred ecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 285 GKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 285 t~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
..+ ...++.||+++|+|+|+...... +...++....|..++..+ .+.|.++|.+++.++
T Consensus 284 ~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g-----~~~~v~~~~~G~lv~~~d--~~~la~~i~~ll~~~ 346 (372)
T cd04949 284 LTSQSEGFGLSLMEALSHGLPVISYDVNYG-----PSEIIEDGENGYLVPKGD--IEALAEAIIELLNDP 346 (372)
T ss_pred ecccccccChHHHHHHhCCCCEEEecCCCC-----cHHHcccCCCceEeCCCc--HHHHHHHHHHHHcCH
Confidence 643 34589999999999999864322 234466667888887655 578999999999876
No 178
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=97.69 E-value=6.7e-05 Score=73.54 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=27.4
Q ss_pred cCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 001939 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~ 54 (993)
+++...||+.|+++|+++|+++||+|++++...
T Consensus 4 ~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~ 36 (139)
T PF03033_consen 4 ATGGTRGHVYPFLALARALRRRGHEVRLATPPD 36 (139)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTT-EEEEEETGG
T ss_pred EEcCChhHHHHHHHHHHHHhccCCeEEEeeccc
Confidence 345557999999999999999999999887754
No 179
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.68 E-value=0.005 Score=69.26 Aligned_cols=101 Identities=18% Similarity=0.091 Sum_probs=74.5
Q ss_pred CCeEECCCCCCHH--HHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhH
Q 001939 262 PNFIKLPKDAYTP--DFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHW 339 (993)
Q Consensus 262 ~nv~~~~~~~~~p--dlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l 339 (993)
+|+++++-..+.+ -+|.+|-+++|-+| +-.-||-.+|+|++.+. ...|++. ....|.-+.+.. +.+.+
T Consensus 262 ~~v~li~pl~~~~f~~L~~~a~~iltDSG-giqEEAp~lg~Pvl~lR--~~TERPE----~v~agt~~lvg~---~~~~i 331 (383)
T COG0381 262 ERVKLIDPLGYLDFHNLMKNAFLILTDSG-GIQEEAPSLGKPVLVLR--DTTERPE----GVEAGTNILVGT---DEENI 331 (383)
T ss_pred CcEEEeCCcchHHHHHHHHhceEEEecCC-chhhhHHhcCCcEEeec--cCCCCcc----ceecCceEEeCc---cHHHH
Confidence 4688776555544 78899999999999 78889999999999998 5567644 344555555543 34788
Q ss_pred HHHHHHHHhCCCCcc---------CCCCHHHHHHHHHHHHHc
Q 001939 340 KPYLERAISLKPCYE---------GGINGGEVAAHILQETAI 372 (993)
Q Consensus 340 ~~~l~~ll~~~~~~~---------~~~~ga~~~a~~i~~~~~ 372 (993)
.+++.++++++..|. ......+++++++..+..
T Consensus 332 ~~~~~~ll~~~~~~~~m~~~~npYgdg~as~rIv~~l~~~~~ 373 (383)
T COG0381 332 LDAATELLEDEEFYERMSNAKNPYGDGNASERIVEILLNYFD 373 (383)
T ss_pred HHHHHHHhhChHHHHHHhcccCCCcCcchHHHHHHHHHHHhh
Confidence 899999998765442 345578888888888743
No 180
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=97.64 E-value=0.0099 Score=64.13 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=43.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCC----------CCC---HHHHHHHHHHHhccccCCCCCcchhhHhhcccc
Q 001939 643 GKGVSSSASVEVASMSAIAAAHGL----------NIH---PRDLALLCQKVENHIVGAPCGVMDQMASACGEA 702 (993)
Q Consensus 643 g~GLgSSAA~~Va~~~al~~~~g~----------~l~---~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~ 702 (993)
..|||||||++.++..+++..+|. +++ ++-+-.+||.+--...|+-...-|-.+++||..
T Consensus 152 KTGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS~ 224 (459)
T KOG4519|consen 152 KTGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGSQ 224 (459)
T ss_pred ccCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhccce
Confidence 579999999999999888887754 133 234456677665555665543469999999984
No 181
>PLN02949 transferase, transferring glycosyl groups
Probab=97.49 E-value=0.015 Score=69.13 Aligned_cols=95 Identities=9% Similarity=-0.035 Sum_probs=64.7
Q ss_pred CCcEEEEeCCCC----C-------------CCCCCeEECCCCC--CHHHHHhhcCEEEecC---Ch-hHHHHHHHcCCcE
Q 001939 246 SGWKCLVCGASD----S-------------QLPPNFIKLPKDA--YTPDFMAASDCMLGKI---GY-GTVSEALAYKLPF 302 (993)
Q Consensus 246 ~~~~~vv~G~~~----~-------------~l~~nv~~~~~~~--~~pdlL~~adl~It~~---G~-~Tv~Eal~~GvP~ 302 (993)
++++++++|... . .+.++|++.++.+ +++++|+.||++|... |+ .++.|||++|+|+
T Consensus 302 ~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PV 381 (463)
T PLN02949 302 PRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVP 381 (463)
T ss_pred CCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcE
Confidence 467888887531 0 0467899998874 5668999999999532 33 4899999999999
Q ss_pred EEEeCCCCC-ChHHHHHHHHH--cC-cEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 303 VFVRRDYFN-EEPFLRNMLEF--YQ-GGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 303 l~ip~~~~~-EQ~~na~~l~~--~G-~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
|+....+.. |. +.. .| .|...+ +++.|.++|.++++++
T Consensus 382 Ia~~~gGp~~eI------V~~~~~g~tG~l~~----~~~~la~ai~~ll~~~ 423 (463)
T PLN02949 382 IAHNSAGPKMDI------VLDEDGQQTGFLAT----TVEEYADAILEVLRMR 423 (463)
T ss_pred EEeCCCCCccee------eecCCCCcccccCC----CHHHHHHHHHHHHhCC
Confidence 998754322 21 111 12 354432 4689999999998754
No 182
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=97.38 E-value=0.005 Score=65.57 Aligned_cols=99 Identities=23% Similarity=0.372 Sum_probs=72.8
Q ss_pred HHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhc
Q 001939 620 LMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASAC 699 (993)
Q Consensus 620 ~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~ 699 (993)
+.+.++. .++.+.+.+++|+|+|+|-|+|...+.+.|++..++.+ .++.++.|+.+|-. .-+|+-|-.+..+
T Consensus 66 v~e~L~~---~~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~---~gtGLGDVvAq~~ 137 (283)
T COG1829 66 VIEKLGP---DGVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEVE---NGTGLGDVVAQYT 137 (283)
T ss_pred HHHHhCc---cCcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHH---cCCCchHHHHHhc
Confidence 3444453 35778999999999999999999999999999999876 78899999999854 3558889999999
Q ss_pred cccceEEEEeecCc--cc--eeeecCCCCeEEEEEe
Q 001939 700 GEANKLLAMVCQPA--EL--LGVVEIPSHIRFWGID 731 (993)
Q Consensus 700 Gg~~~~~~i~~~~~--~~--~~~v~~p~~~~~ll~d 731 (993)
||. + +..++. .+ ...++.|. ++++.+.
T Consensus 138 GGl--V--iR~~pG~Pg~~~vd~Ip~~~-~~V~~~~ 168 (283)
T COG1829 138 GGL--V--IRVKPGGPGEGEVDRIPVPG-LRVITIS 168 (283)
T ss_pred CcE--E--EEecCCCCCeEEEEEeecCC-ceEEEEE
Confidence 993 3 333332 11 24455543 6666553
No 183
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.34 E-value=0.0078 Score=72.14 Aligned_cols=120 Identities=11% Similarity=-0.016 Sum_probs=81.4
Q ss_pred CcEEEEEcCCCCCh---hhHHHhh---C--CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCEE
Q 001939 223 VKLLILNFGGQPAG---WKLKEEY---L--PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDCM 283 (993)
Q Consensus 223 ~~~Vlvs~G~~~~~---~~ll~~l---~--~~~~~~vv~G~~~~~-----------l~~nv~~~~~~~~~pdlL~~adl~ 283 (993)
.+.++++.|..... ..+++++ . .+++.+++.|.+... +.++|.+.|+. +++++++.+|++
T Consensus 318 ~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~-~~~~~~~~adv~ 396 (500)
T TIGR02918 318 KPFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHR-NLSEVYKDYELY 396 (500)
T ss_pred CCeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCC-CHHHHHHhCCEE
Confidence 34567788877653 2234432 1 257778888876531 35678999976 588999999999
Q ss_pred EecC---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCC--CC----hhhHHHHHHHHHh
Q 001939 284 LGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRD--LL----TGHWKPYLERAIS 348 (993)
Q Consensus 284 It~~---G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~--~~----~~~l~~~l~~ll~ 348 (993)
|..+ | ..++.||+++|+|+|+....... .+.++....|..++..+ -+ .+.|.++|.++++
T Consensus 397 v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G~-----~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~ 466 (500)
T TIGR02918 397 LSASTSEGFGLTLMEAVGSGLGMIGFDVNYGN-----PTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN 466 (500)
T ss_pred EEcCccccccHHHHHHHHhCCCEEEecCCCCC-----HHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC
Confidence 9744 3 36899999999999998753222 33455556788887321 11 5678888988883
No 184
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=96.81 E-value=0.43 Score=54.53 Aligned_cols=82 Identities=13% Similarity=0.052 Sum_probs=61.1
Q ss_pred CeEECCCCCCHHHHHhhcCEEEe-----cCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChh
Q 001939 263 NFIKLPKDAYTPDFMAASDCMLG-----KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTG 337 (993)
Q Consensus 263 nv~~~~~~~~~pdlL~~adl~It-----~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~ 337 (993)
+|.+.|-...|-.++..+|+.+- .-|+--..|.+++|+|+|.=| +.+-|...++.+++.|+++.++. ++
T Consensus 301 dV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp--~~~Nf~ei~~~l~~~ga~~~v~~----~~ 374 (419)
T COG1519 301 DVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGP--YTFNFSDIAERLLQAGAGLQVED----AD 374 (419)
T ss_pred cEEEEecHhHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEeCC--ccccHHHHHHHHHhcCCeEEECC----HH
Confidence 56665544456677888998763 123356889999999999988 44567788999999999999985 35
Q ss_pred hHHHHHHHHHhCC
Q 001939 338 HWKPYLERAISLK 350 (993)
Q Consensus 338 ~l~~~l~~ll~~~ 350 (993)
.|..+++.++.++
T Consensus 375 ~l~~~v~~l~~~~ 387 (419)
T COG1519 375 LLAKAVELLLADE 387 (419)
T ss_pred HHHHHHHHhcCCH
Confidence 6777777776654
No 185
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.75 E-value=0.0023 Score=62.05 Aligned_cols=94 Identities=20% Similarity=0.160 Sum_probs=61.4
Q ss_pred CCcEEEEeCCCCCC---C-CCCeEECCCCCCHHHHHhhcCEEEecC----C-hhHHHHHHHcCCcEEEEeCCCCCChHHH
Q 001939 246 SGWKCLVCGASDSQ---L-PPNFIKLPKDAYTPDFMAASDCMLGKI----G-YGTVSEALAYKLPFVFVRRDYFNEEPFL 316 (993)
Q Consensus 246 ~~~~~vv~G~~~~~---l-~~nv~~~~~~~~~pdlL~~adl~It~~----G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~n 316 (993)
+++.+.++|...+. + .+||++.++.+.++++|+.||++|... | .+++.|++++|+|+|+.+. ..
T Consensus 33 p~~~l~i~G~~~~~l~~~~~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~------ 105 (135)
T PF13692_consen 33 PDIELIIIGNGPDELKRLRRPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-GA------ 105 (135)
T ss_dssp TTEEEEEECESS-HHCCHHHCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-HC------
T ss_pred cCEEEEEEeCCHHHHHHhcCCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-ch------
Confidence 56778888875433 2 569999998877779999999999632 2 3789999999999999873 11
Q ss_pred HHHHHHcCcEEEEecCCCChhhHHHHHHHHHhC
Q 001939 317 RNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (993)
Q Consensus 317 a~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (993)
....+..+.+..+ .+ +++.|.++|.++++|
T Consensus 106 ~~~~~~~~~~~~~-~~--~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 106 EGIVEEDGCGVLV-AN--DPEELAEAIERLLND 135 (135)
T ss_dssp HCHS---SEEEE--TT---HHHHHHHHHHHHH-
T ss_pred hhheeecCCeEEE-CC--CHHHHHHHHHHHhcC
Confidence 2234557788777 33 478999999999865
No 186
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.017 Score=55.01 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=75.5
Q ss_pred EEEEcCCCCChh-hHHH-----hhCC--CCcEEEEeCCCCCCCC-CCeEECCCCC--CHHHHHhhcCEEEecCChhHHHH
Q 001939 226 LILNFGGQPAGW-KLKE-----EYLP--SGWKCLVCGASDSQLP-PNFIKLPKDA--YTPDFMAASDCMLGKIGYGTVSE 294 (993)
Q Consensus 226 Vlvs~G~~~~~~-~ll~-----~l~~--~~~~~vv~G~~~~~l~-~nv~~~~~~~--~~pdlL~~adl~It~~G~~Tv~E 294 (993)
++|+.|+.-.+. .+.. .+.. .+..++-.|..+.. | ...++++|.. -+..++..+.++|+|+|-||+..
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~k-pvagl~v~~F~~~~kiQsli~darIVISHaG~GSIL~ 80 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDIK-PVAGLRVYGFDKEEKIQSLIHDARIVISHAGEGSILL 80 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCcc-cccccEEEeechHHHHHHHhhcceEEEeccCcchHHH
Confidence 678888874431 1111 1111 22345567875543 4 3367777764 35578888999999999999999
Q ss_pred HHHcCCcEEEEeCCC-C-----CChHHHHHHHHHcCcEEEEecCC
Q 001939 295 ALAYKLPFVFVRRDY-F-----NEEPFLRNMLEFYQGGVEMIRRD 333 (993)
Q Consensus 295 al~~GvP~l~ip~~~-~-----~EQ~~na~~l~~~G~g~~l~~~~ 333 (993)
++..++|.|++|+.. + ..|...|..+.+.++-+.+++-+
T Consensus 81 ~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~spte 125 (161)
T COG5017 81 LLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSPTE 125 (161)
T ss_pred HhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEcCCc
Confidence 999999999999753 2 24667899999999999988644
No 187
>PHA01633 putative glycosyl transferase group 1
Probab=96.63 E-value=0.0074 Score=68.19 Aligned_cols=138 Identities=12% Similarity=0.053 Sum_probs=83.7
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCCh--h-hHHHh---hC--CC----CcEEEEeCCCC-C--CCCCCeEECCC---C--
Q 001939 211 KEVRKELGIEDDVKLLILNFGGQPAG--W-KLKEE---YL--PS----GWKCLVCGASD-S--QLPPNFIKLPK---D-- 270 (993)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~G~~~~~--~-~ll~~---l~--~~----~~~~vv~G~~~-~--~l~~nv~~~~~---~-- 270 (993)
.++++.++.......++++.|..... . .++++ +. .+ ++.+++.|... . .++++|++.++ .
T Consensus 135 ~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~~~~~l~l~~~V~f~g~~G~~~~ 214 (335)
T PHA01633 135 PQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHKQFTQLEVPANVHFVAEFGHNSR 214 (335)
T ss_pred HHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHHHHHHcCCCCcEEEEecCCCCCH
Confidence 34666665432234456666766542 2 23332 21 12 23556666432 1 26788998753 2
Q ss_pred CCHHHHHhhcCEEEecC---C-hhHHHHHHHcCCcEEEEeCCCCCCh----------HHHHHHHH--HcCcEEEEecCCC
Q 001939 271 AYTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEE----------PFLRNMLE--FYQGGVEMIRRDL 334 (993)
Q Consensus 271 ~~~pdlL~~adl~It~~---G-~~Tv~Eal~~GvP~l~ip~~~~~EQ----------~~na~~l~--~~G~g~~l~~~~~ 334 (993)
+++++++++||+||..+ | ..++.||+++|+|+|+...+...|- ..++..+. ..|.|..++ ..
T Consensus 215 ~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~--~~ 292 (335)
T PHA01633 215 EYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIH--KF 292 (335)
T ss_pred HHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeec--CC
Confidence 35678999999999743 3 3689999999999999865544441 11222222 356776665 34
Q ss_pred ChhhHHHHHHHHHhCC
Q 001939 335 LTGHWKPYLERAISLK 350 (993)
Q Consensus 335 ~~~~l~~~l~~ll~~~ 350 (993)
+++.+.++|.+++...
T Consensus 293 d~~~la~ai~~~~~~~ 308 (335)
T PHA01633 293 QIEDMANAIILAFELQ 308 (335)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 5789999999987554
No 188
>PRK14098 glycogen synthase; Provisional
Probab=96.52 E-value=0.016 Score=69.39 Aligned_cols=135 Identities=17% Similarity=0.066 Sum_probs=87.0
Q ss_pred hHHHHHHhCCCCC-CcEEEEEcCCCCC--hhhH-HH---hhCCCCcEEEEeCCCCCC-----------CCCCeEECCCCC
Q 001939 210 RKEVRKELGIEDD-VKLLILNFGGQPA--GWKL-KE---EYLPSGWKCLVCGASDSQ-----------LPPNFIKLPKDA 271 (993)
Q Consensus 210 ~~~~r~~l~~~~~-~~~Vlvs~G~~~~--~~~l-l~---~l~~~~~~~vv~G~~~~~-----------l~~nv~~~~~~~ 271 (993)
+..+++.++++.+ ...++++.|.... +..+ ++ .+...+++++++|.+... .+.+|.+.++.+
T Consensus 292 k~~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~ 371 (489)
T PRK14098 292 KKALLEEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFT 371 (489)
T ss_pred HHHHHHHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 3456777888632 3346677777654 2232 22 333457888888876421 467888877654
Q ss_pred C--HHHHHhhcCEEEecC---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHH
Q 001939 272 Y--TPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLER 345 (993)
Q Consensus 272 ~--~pdlL~~adl~It~~---G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ 345 (993)
. ++.+++.||+|+..+ | ..+.+||+++|+|.|+....+..|... +..+..+.|..+...+ ++.|.++|.+
T Consensus 372 ~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~--~~~~~~~~G~l~~~~d--~~~la~ai~~ 447 (489)
T PRK14098 372 DAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIE--EVSEDKGSGFIFHDYT--PEALVAKLGE 447 (489)
T ss_pred HHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeee--cCCCCCCceeEeCCCC--HHHHHHHHHH
Confidence 3 468999999999644 2 258899999999999876544444310 1111246788887655 5788999988
Q ss_pred HHh
Q 001939 346 AIS 348 (993)
Q Consensus 346 ll~ 348 (993)
++.
T Consensus 448 ~l~ 450 (489)
T PRK14098 448 ALA 450 (489)
T ss_pred HHH
Confidence 763
No 189
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=96.50 E-value=0.012 Score=68.86 Aligned_cols=122 Identities=11% Similarity=0.033 Sum_probs=78.7
Q ss_pred CCcEEEEEcCCCCCh--h-hHHHh---hC--CC--CcEEEEeCCCCCC-----------CCCCeEECCCCCC--HHHHHh
Q 001939 222 DVKLLILNFGGQPAG--W-KLKEE---YL--PS--GWKCLVCGASDSQ-----------LPPNFIKLPKDAY--TPDFMA 278 (993)
Q Consensus 222 ~~~~Vlvs~G~~~~~--~-~ll~~---l~--~~--~~~~vv~G~~~~~-----------l~~nv~~~~~~~~--~pdlL~ 278 (993)
+.+..+++.|..... . .+++. +. .+ +..+++.|.+... ..++|++.|++++ ++.+++
T Consensus 228 ~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~ 307 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYK 307 (407)
T ss_pred CCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHh
Confidence 345667778876642 2 23332 21 12 3345566665421 2456889998863 557776
Q ss_pred h--cCEEEecC---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 279 A--SDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 279 ~--adl~It~~---G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
. +|+||..+ | .++++|||++|+|+|+....+.. +.+.....|..+... .+++.|.++|.++++++
T Consensus 308 ~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~------e~i~~~~~G~l~~~~-~~~~~la~~I~~ll~~~ 378 (407)
T cd04946 308 ENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTP------EIVDNGGNGLLLSKD-PTPNELVSSLSKFIDNE 378 (407)
T ss_pred hcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCcH------HHhcCCCcEEEeCCC-CCHHHHHHHHHHHHhCH
Confidence 4 78888544 2 45899999999999997644333 335555578887653 24688999999999766
No 190
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.24 E-value=0.45 Score=53.42 Aligned_cols=96 Identities=17% Similarity=0.027 Sum_probs=62.3
Q ss_pred CCeEECCCC--CCHHHHHhhcCEEEecCChh-HHHHHHHcCCcEEEEeCCCCCCh-HHHHHHHHHcCcEEEEecCCCChh
Q 001939 262 PNFIKLPKD--AYTPDFMAASDCMLGKIGYG-TVSEALAYKLPFVFVRRDYFNEE-PFLRNMLEFYQGGVEMIRRDLLTG 337 (993)
Q Consensus 262 ~nv~~~~~~--~~~pdlL~~adl~It~~G~~-Tv~Eal~~GvP~l~ip~~~~~EQ-~~na~~l~~~G~g~~l~~~~~~~~ 337 (993)
+.+.+++.. ++..++|+.||.+|..+..- -++||++.|+|+.+++.+..... ..-.+.|++.|+...++...-.
T Consensus 209 ~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~~~~~~-- 286 (311)
T PF06258_consen 209 PGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFTGWRDL-- 286 (311)
T ss_pred CceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHHCCCEEECCCcccc--
Confidence 455455433 35669999999999877754 58899999999999997652221 1245677888887666532111
Q ss_pred hHHHHHHHHHhCCCCccCCCCHHHHHHHHHHHH
Q 001939 338 HWKPYLERAISLKPCYEGGINGGEVAAHILQET 370 (993)
Q Consensus 338 ~l~~~l~~ll~~~~~~~~~~~ga~~~a~~i~~~ 370 (993)
. . + ......+-+.++|++|.+.
T Consensus 287 --~----~----~-~~~~pl~et~r~A~~i~~r 308 (311)
T PF06258_consen 287 --E----Q----W-TPYEPLDETDRVAAEIRER 308 (311)
T ss_pred --c----c----c-ccCCCccHHHHHHHHHHHH
Confidence 0 1 1 1113567788888887764
No 191
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=95.27 E-value=2 Score=46.02 Aligned_cols=89 Identities=19% Similarity=0.183 Sum_probs=53.6
Q ss_pred ccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHHHHHhhccHHHhH
Q 001939 28 GHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSIL 107 (993)
Q Consensus 28 GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 107 (993)
|...-+.+|++.|...++.+++.+.....- .... ...+. ...|+. -.
T Consensus 9 GGT~Dar~la~~L~~~~~~~~~ss~t~~g~--~l~~----~~~~~-~~~G~l--------------------------~~ 55 (257)
T COG2099 9 GGTSDARALAKKLAAAPVDIILSSLTGYGA--KLAE----QIGPV-RVGGFL--------------------------GA 55 (257)
T ss_pred eccHHHHHHHHHhhccCccEEEEEcccccc--cchh----ccCCe-eecCcC--------------------------CH
Confidence 556778999999999987777765543111 0000 00000 001110 01
Q ss_pred HHHHHHHhcCCCcEEE-ECCCchH------HHHHHHcCCcEEEEecCch
Q 001939 108 KDEVEWLNSIKADLVV-SDVVPVA------CRAAADAGIRSVCVTNFSW 149 (993)
Q Consensus 108 ~~~~~~L~~~kPDlVV-sD~~~~a------~laA~~~gIP~V~i~~~~~ 149 (993)
....++|++.+.|+|| ..|+|++ ..+++.+|||++.+..-.|
T Consensus 56 e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~ 104 (257)
T COG2099 56 EGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPW 104 (257)
T ss_pred HHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCcc
Confidence 2336788999999999 5666653 4567888999998755444
No 192
>PHA01630 putative group 1 glycosyl transferase
Probab=94.74 E-value=0.18 Score=57.31 Aligned_cols=68 Identities=16% Similarity=0.021 Sum_probs=43.3
Q ss_pred CCcEEEEeCCCCCCC-CCCeE-ECCCC--CCHHHHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCCh
Q 001939 246 SGWKCLVCGASDSQL-PPNFI-KLPKD--AYTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEE 313 (993)
Q Consensus 246 ~~~~~vv~G~~~~~l-~~nv~-~~~~~--~~~pdlL~~adl~It~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ 313 (993)
+++.+++.|...... -.++. +.++. ++++++|+.||++|..+ -..++.|||++|+|+|+....+..|.
T Consensus 172 ~~~~llivG~~~~~~~l~~~~~~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~ 247 (331)
T PHA01630 172 YDFYFLIKSSNMLDPRLFGLNGVKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEW 247 (331)
T ss_pred CCEEEEEEeCcccchhhccccceeccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhh
Confidence 466777778543221 01111 11112 35678999999999532 24689999999999999886544453
No 193
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=94.45 E-value=6.5 Score=42.88 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=32.9
Q ss_pred CCCeEEC--CCCCCHH-HHHhh--cCEEEec--CChhH----HHHHHHcCCcEEEEeCCC
Q 001939 261 PPNFIKL--PKDAYTP-DFMAA--SDCMLGK--IGYGT----VSEALAYKLPFVFVRRDY 309 (993)
Q Consensus 261 ~~nv~~~--~~~~~~p-dlL~~--adl~It~--~G~~T----v~Eal~~GvP~l~ip~~~ 309 (993)
+.|+... +|...+. .++.+ +|++||+ ||.|. +.-|..+|+|+|+|.+|.
T Consensus 174 ~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~ 233 (256)
T TIGR00715 174 SDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQ 233 (256)
T ss_pred hhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCC
Confidence 4565543 4554444 56764 9999996 22222 456888999999999874
No 194
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=94.40 E-value=1.3 Score=49.42 Aligned_cols=68 Identities=19% Similarity=0.198 Sum_probs=50.8
Q ss_pred CCcEEEEeCCCCCC-----------CCCCeEECCCCC--CHHHHHhhcCEEEecCC----hhHHHHHHHcCCcEEEEeCC
Q 001939 246 SGWKCLVCGASDSQ-----------LPPNFIKLPKDA--YTPDFMAASDCMLGKIG----YGTVSEALAYKLPFVFVRRD 308 (993)
Q Consensus 246 ~~~~~vv~G~~~~~-----------l~~nv~~~~~~~--~~pdlL~~adl~It~~G----~~Tv~Eal~~GvP~l~ip~~ 308 (993)
++.++++.|.++.. +.+.+.++|-++ .+.+.|..-|+|+..+= ..++.||+.||+|+|.....
T Consensus 225 p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVsTrVG 304 (426)
T KOG1111|consen 225 PEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVSTRVG 304 (426)
T ss_pred CCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEEeecC
Confidence 57788888887631 577888877663 45589999999996442 24788999999999998865
Q ss_pred CCCCh
Q 001939 309 YFNEE 313 (993)
Q Consensus 309 ~~~EQ 313 (993)
+-+|-
T Consensus 305 GIpeV 309 (426)
T KOG1111|consen 305 GIPEV 309 (426)
T ss_pred Ccccc
Confidence 55543
No 195
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=93.84 E-value=9 Score=41.61 Aligned_cols=151 Identities=19% Similarity=0.166 Sum_probs=80.5
Q ss_pred HHHHhcCCCcEEE-ECCCchH------HHHHHHcCCcEEEEecCchhHHHHHHHhhcccchHHHHHHHHhhccccceeee
Q 001939 111 VEWLNSIKADLVV-SDVVPVA------CRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEFLIR 183 (993)
Q Consensus 111 ~~~L~~~kPDlVV-sD~~~~a------~laA~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~~l~~~y~~~d~ll~ 183 (993)
.+++++.++|+|| ..|+|+. ..+++.+|||++.+..-.|... ..+
T Consensus 59 ~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~------------------------~~~---- 110 (249)
T PF02571_consen 59 AEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPE------------------------PDD---- 110 (249)
T ss_pred HHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccC------------------------CCC----
Confidence 5678899999999 5666653 3467788999998744333100 000
Q ss_pred cCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCChhhHHH-hhCCCCcEEEEeCCCCCC--C
Q 001939 184 LPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAGWKLKE-EYLPSGWKCLVCGASDSQ--L 260 (993)
Q Consensus 184 ~p~~~~~p~~~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~~~ll~-~l~~~~~~~vv~G~~~~~--l 260 (993)
..+.+. +-+++-+.+.- .+.+.|+++.|+.... .+.. ......+.+.+.-..... +
T Consensus 111 -----------~~~~v~--------~~~eA~~~l~~-~~~~~iflttGsk~L~-~f~~~~~~~~r~~~RvLp~~~~~~g~ 169 (249)
T PF02571_consen 111 -----------NWHYVD--------SYEEAAELLKE-LGGGRIFLTTGSKNLP-PFVPAPLPGERLFARVLPTPESALGF 169 (249)
T ss_pred -----------eEEEeC--------CHHHHHHHHhh-cCCCCEEEeCchhhHH-HHhhcccCCCEEEEEECCCccccCCC
Confidence 011111 11223333311 1224689999976552 2222 111111222232111112 2
Q ss_pred -CCCeEEC--CCCCCHH-HHHhh--cCEEEecC-ChhH----HHHHHHcCCcEEEEeCCCC
Q 001939 261 -PPNFIKL--PKDAYTP-DFMAA--SDCMLGKI-GYGT----VSEALAYKLPFVFVRRDYF 310 (993)
Q Consensus 261 -~~nv~~~--~~~~~~p-dlL~~--adl~It~~-G~~T----v~Eal~~GvP~l~ip~~~~ 310 (993)
+.|+... +|...+. .++.+ +|++||+- |..+ +.-|..+|+|+|+|.+|..
T Consensus 170 ~~~~iia~~GPfs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~ 230 (249)
T PF02571_consen 170 PPKNIIAMQGPFSKELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKRPPE 230 (249)
T ss_pred ChhhEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCC
Confidence 4565543 5554444 56664 99999963 3222 4468899999999998754
No 196
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=93.36 E-value=5.5 Score=45.14 Aligned_cols=93 Identities=16% Similarity=0.359 Sum_probs=57.5
Q ss_pred HHHHhCCCCCCcEEEEEcCCC-CC--hh------hHHHhhCCCCcEEEEeCCCCCC---------CCCCeE-ECCCC--C
Q 001939 213 VRKELGIEDDVKLLILNFGGQ-PA--GW------KLKEEYLPSGWKCLVCGASDSQ---------LPPNFI-KLPKD--A 271 (993)
Q Consensus 213 ~r~~l~~~~~~~~Vlvs~G~~-~~--~~------~ll~~l~~~~~~~vv~G~~~~~---------l~~nv~-~~~~~--~ 271 (993)
+...++++.++++|.+..|+. +. .| ++.+.+...+..++++|...+. .+.++. ..+.. .
T Consensus 164 ~~~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~ 243 (334)
T TIGR02195 164 ALAKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLD 243 (334)
T ss_pred HHHHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHH
Confidence 345556655678888888874 23 12 2333444445677777764321 233332 22322 1
Q ss_pred CHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEe
Q 001939 272 YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVR 306 (993)
Q Consensus 272 ~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip 306 (993)
.+..+|+.||++||.= .|.+.=|.+.|+|+|++=
T Consensus 244 el~ali~~a~l~I~~D-SGp~HlAaA~~~P~i~lf 277 (334)
T TIGR02195 244 EAVDLIALAKAVVTND-SGLMHVAAALNRPLVALY 277 (334)
T ss_pred HHHHHHHhCCEEEeeC-CHHHHHHHHcCCCEEEEE
Confidence 2346888999999843 377888999999999975
No 197
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=93.19 E-value=0.48 Score=53.82 Aligned_cols=109 Identities=13% Similarity=0.019 Sum_probs=70.5
Q ss_pred EEEEcCCCCChhhHHHhhCCCCcEEEEeCCCCCC--CCCCeEECCCCC--CHHHHHhhcCEEEecC--------C-----
Q 001939 226 LILNFGGQPAGWKLKEEYLPSGWKCLVCGASDSQ--LPPNFIKLPKDA--YTPDFMAASDCMLGKI--------G----- 288 (993)
Q Consensus 226 Vlvs~G~~~~~~~ll~~l~~~~~~~vv~G~~~~~--l~~nv~~~~~~~--~~pdlL~~adl~It~~--------G----- 288 (993)
+++..|+.+.. ..+.. ..+++.++++|.+... ..+||++.|+.+ .++.+|+..-.+|.-. .
T Consensus 171 ~i~yaG~l~k~-~~l~~-~~~~~~l~i~G~g~~~~~~~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~ 248 (333)
T PRK09814 171 KINFAGNLEKS-PFLKN-WSQGIKLTVFGPNPEDLENSANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYN 248 (333)
T ss_pred eEEEecChhhc-hHHHh-cCCCCeEEEECCCccccccCCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhcc
Confidence 55666777742 22322 2346778888876542 568999998875 3556676522222211 1
Q ss_pred -hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 001939 289 -YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (993)
Q Consensus 289 -~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (993)
.+-+.|.|++|+|+|+.+. ...++.+++.++|+.++ +.+++.+.|+++
T Consensus 249 ~P~K~~~ymA~G~PVI~~~~------~~~~~~V~~~~~G~~v~----~~~el~~~l~~~ 297 (333)
T PRK09814 249 NPHKLSLYLAAGLPVIVWSK------AAIADFIVENGLGFVVD----SLEELPEIIDNI 297 (333)
T ss_pred chHHHHHHHHCCCCEEECCC------ccHHHHHHhCCceEEeC----CHHHHHHHHHhc
Confidence 1237889999999999642 24577899999999987 235677777664
No 198
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=92.66 E-value=9.9 Score=40.88 Aligned_cols=84 Identities=20% Similarity=0.164 Sum_probs=50.7
Q ss_pred HHHHhhcCEEEecCCh-hHHHHHHHcCCcEEEEeCCCCC-Ch-HHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 274 PDFMAASDCMLGKIGY-GTVSEALAYKLPFVFVRRDYFN-EE-PFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 274 pdlL~~adl~It~~G~-~Tv~Eal~~GvP~l~ip~~~~~-EQ-~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
+++|++||.+|+.+.. +-.+||++.|+|+-+.-.+.+. .- ..-.+.|++.+++...+...+ +++..
T Consensus 239 ~~~La~Adyii~TaDSinM~sEAasTgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~~~~~-------~~e~y---- 307 (329)
T COG3660 239 IDMLAAADYIISTADSINMCSEAASTGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPFEGSNL-------ALEEY---- 307 (329)
T ss_pred HHHHhhcceEEEecchhhhhHHHhccCCCeEEEecCCcchHHHHHHHHHHHHhhhccccCcchh-------hhccc----
Confidence 4999999999987764 4578999999999887655442 11 111233444555543332111 11111
Q ss_pred CCccCCCCHHHHHHHHHHHH
Q 001939 351 PCYEGGINGGEVAAHILQET 370 (993)
Q Consensus 351 ~~~~~~~~ga~~~a~~i~~~ 370 (993)
.....+-++++|..|...
T Consensus 308 --sy~PLnEt~RiA~~Ira~ 325 (329)
T COG3660 308 --SYKPLNETERIAEEIRAE 325 (329)
T ss_pred --ccCCchHHHHHHHHHHHH
Confidence 114567788888887765
No 199
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=92.65 E-value=0.95 Score=46.15 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCcEEEECCC---chHHHHHHHc------CCcEEEEecCc
Q 001939 108 KDEVEWLNSIKADLVVSDVV---PVACRAAADA------GIRSVCVTNFS 148 (993)
Q Consensus 108 ~~~~~~L~~~kPDlVVsD~~---~~a~laA~~~------gIP~V~i~~~~ 148 (993)
.....++.+.|||+||+..+ .+.+++++.+ +.++|.+..+.
T Consensus 82 ~~~~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~a 131 (170)
T PF08660_consen 82 LQSLRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFA 131 (170)
T ss_pred HHHHHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 34466778999999998763 3456678888 99999985543
No 200
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=92.62 E-value=5.4 Score=44.86 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=65.2
Q ss_pred CCCcEEEEEcCCCCC-h-h------hHHHhhCCCCcEEEEe-CCCCC-C----C---CCCeEECCCCCCHH---HHHhhc
Q 001939 221 DDVKLLILNFGGQPA-G-W------KLKEEYLPSGWKCLVC-GASDS-Q----L---PPNFIKLPKDAYTP---DFMAAS 280 (993)
Q Consensus 221 ~~~~~Vlvs~G~~~~-~-~------~ll~~l~~~~~~~vv~-G~~~~-~----l---~~nv~~~~~~~~~p---dlL~~a 280 (993)
.+++.|++.-|+... + | ++.+.+...++.++++ |...+ + + -++..+.+.. .++ .+++.|
T Consensus 177 ~~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~-sL~el~ali~~a 255 (319)
T TIGR02193 177 LPAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKM-SLAEVAALLAGA 255 (319)
T ss_pred CCCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCC-CHHHHHHHHHcC
Confidence 356777776665433 1 2 2333444446666665 53221 1 1 1223344433 344 677889
Q ss_pred CEEEecCChhHHHHHHHcCCcEEEEeCCCCCChH--H--HHHHHHHcCcEEEEecCCCChhhHHHHHHHHH
Q 001939 281 DCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEP--F--LRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (993)
Q Consensus 281 dl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~--~--na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll 347 (993)
|++||. -.+.+.=|.+.|+|+|++=.+....+. . |...+. .-..++++++++.++++++|
T Consensus 256 ~l~I~~-DSgp~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~------~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 256 DAVVGV-DTGLTHLAAALDKPTVTLYGATDPGRTGGYGKPNVALL------GESGANPTPDEVLAALEELL 319 (319)
T ss_pred CEEEeC-CChHHHHHHHcCCCEEEEECCCCHhhcccCCCCceEEc------cCccCCCCHHHHHHHHHhhC
Confidence 999984 447788889999999997532211110 0 111111 01246788888888887764
No 201
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=92.56 E-value=1.4 Score=42.57 Aligned_cols=100 Identities=13% Similarity=0.106 Sum_probs=56.2
Q ss_pred EEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHHH
Q 001939 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYS 96 (993)
Q Consensus 17 ~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 96 (993)
||+|+.... ..| ...+++.|.++|++|++++..... ........+.+... ..+ ... ...+.
T Consensus 1 KIl~i~~~~-~~~---~~~~~~~L~~~g~~V~ii~~~~~~--~~~~~~~~i~~~~~--~~~--------~k~---~~~~~ 61 (139)
T PF13477_consen 1 KILLIGNTP-STF---IYNLAKELKKRGYDVHIITPRNDY--EKYEIIEGIKVIRL--PSP--------RKS---PLNYI 61 (139)
T ss_pred CEEEEecCc-HHH---HHHHHHHHHHCCCEEEEEEcCCCc--hhhhHhCCeEEEEe--cCC--------CCc---cHHHH
Confidence 355554433 234 568899999999999999875432 11111122333221 000 000 01111
Q ss_pred HHhhccHHHhHHHHHHHHhcCCCcEEEECC-Cc---hHHHHHHHcC-CcEEEE
Q 001939 97 ETAVAPRKSILKDEVEWLNSIKADLVVSDV-VP---VACRAAADAG-IRSVCV 144 (993)
Q Consensus 97 ~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~---~a~laA~~~g-IP~V~i 144 (993)
. +.....++++.+||+|+++. .+ .+.+++...+ +|.+..
T Consensus 62 --------~-~~~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 62 --------K-YFRLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred --------H-HHHHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 1 12447788999999999776 32 2455667788 888854
No 202
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=92.39 E-value=8.7 Score=43.84 Aligned_cols=91 Identities=14% Similarity=0.280 Sum_probs=54.4
Q ss_pred HHhCCCCCCcEEEEEcCCC-CC--hh------hHHHhhCCCCcEEEEeCCCCCC---------CCC----Ce-EECCCCC
Q 001939 215 KELGIEDDVKLLILNFGGQ-PA--GW------KLKEEYLPSGWKCLVCGASDSQ---------LPP----NF-IKLPKDA 271 (993)
Q Consensus 215 ~~l~~~~~~~~Vlvs~G~~-~~--~~------~ll~~l~~~~~~~vv~G~~~~~---------l~~----nv-~~~~~~~ 271 (993)
..+++..++++|.+..|+. +. .| ++.+.+...++.++++|...+. ++. ++ ...+..+
T Consensus 172 ~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~s 251 (348)
T PRK10916 172 AAFSLSSERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQ 251 (348)
T ss_pred HHcCCCCCCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCC
Confidence 3344444678888888874 22 22 2333444456777777654321 221 22 2233221
Q ss_pred --CHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEe
Q 001939 272 --YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVR 306 (993)
Q Consensus 272 --~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip 306 (993)
.+..+|+.||+|||. -.|-+.=|.+.|+|+|.+=
T Consensus 252 L~el~ali~~a~l~I~n-DTGp~HlAaA~g~P~valf 287 (348)
T PRK10916 252 LEQAVILIAACKAIVTN-DSGLMHVAAALNRPLVALY 287 (348)
T ss_pred HHHHHHHHHhCCEEEec-CChHHHHHHHhCCCEEEEE
Confidence 233677889999984 4478888999999999874
No 203
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=91.22 E-value=0.64 Score=45.45 Aligned_cols=97 Identities=25% Similarity=0.239 Sum_probs=44.2
Q ss_pred ccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHHHHHhhccHHHhH
Q 001939 28 GHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKSIL 107 (993)
Q Consensus 28 GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 107 (993)
|--.....++++|.++||+|++++..+...... .....+.+... ... ... ..... + ..+
T Consensus 2 G~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~~~~~~~~~~~--~~~--~~~----~~~~~-------~-----~~~ 60 (160)
T PF13579_consen 2 GIERYVRELARALAARGHEVTVVTPQPDPEDDE-EEEDGVRVHRL--PLP--RRP----WPLRL-------L-----RFL 60 (160)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE---GGG-S-EEETTEEEEEE----S---SS----SGGGH-------C-----CHH
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEecCCCCcccc-cccCCceEEec--cCC--ccc----hhhhh-------H-----HHH
Confidence 445677899999999999999998654222111 11112233221 100 000 00000 0 012
Q ss_pred HHHHHHH--hcCCCcEEEECCCc---hHHHHHHHcCCcEEEEe
Q 001939 108 KDEVEWL--NSIKADLVVSDVVP---VACRAAADAGIRSVCVT 145 (993)
Q Consensus 108 ~~~~~~L--~~~kPDlVVsD~~~---~a~laA~~~gIP~V~i~ 145 (993)
....+++ ++.+||+|++.... .+.++....++|+|...
T Consensus 61 ~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 61 RRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred HHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 2334455 78899999987632 23333447799998763
No 204
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=90.86 E-value=2.6 Score=41.87 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=22.1
Q ss_pred cccHHHHHHHHHHHHHCCCeEEEEeCC
Q 001939 27 FGHATRVVEVVRNLISAGHDVHVVTGA 53 (993)
Q Consensus 27 ~GH~~ralaLA~aL~~~Gh~V~~v~~~ 53 (993)
.|--.-+..|+++|.++||+|++++..
T Consensus 12 GG~e~~~~~l~~~l~~~G~~v~v~~~~ 38 (177)
T PF13439_consen 12 GGAERVVLNLARALAKRGHEVTVVSPG 38 (177)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred ChHHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 466666779999999999999999765
No 205
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=90.50 E-value=34 Score=39.03 Aligned_cols=84 Identities=10% Similarity=0.218 Sum_probs=49.9
Q ss_pred CCcEEEEEcCCCCC--hh------hHHHhhCCCCcEEEEeCC-CCCC------C-----CCC-eEECCCCC--CHHHHHh
Q 001939 222 DVKLLILNFGGQPA--GW------KLKEEYLPSGWKCLVCGA-SDSQ------L-----PPN-FIKLPKDA--YTPDFMA 278 (993)
Q Consensus 222 ~~~~Vlvs~G~~~~--~~------~ll~~l~~~~~~~vv~G~-~~~~------l-----~~n-v~~~~~~~--~~pdlL~ 278 (993)
+.++|.+..|+... .| ++.+.+...+..++++|. ...+ + ..+ +...+..+ .+..+|+
T Consensus 182 ~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 261 (352)
T PRK10422 182 TQNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALID 261 (352)
T ss_pred CCCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHH
Confidence 34678888776433 12 233344344666676644 3211 1 112 22334332 2347888
Q ss_pred hcCEEEecCChhHHHHHHHcCCcEEEEe
Q 001939 279 ASDCMLGKIGYGTVSEALAYKLPFVFVR 306 (993)
Q Consensus 279 ~adl~It~~G~~Tv~Eal~~GvP~l~ip 306 (993)
.||+|||.=. |-+.=|.+.|+|+|++=
T Consensus 262 ~a~l~v~nDS-Gp~HlAaA~g~P~v~lf 288 (352)
T PRK10422 262 HAQLFIGVDS-APAHIAAAVNTPLICLF 288 (352)
T ss_pred hCCEEEecCC-HHHHHHHHcCCCEEEEE
Confidence 9999999543 77888899999999875
No 206
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=89.67 E-value=0.35 Score=49.18 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCcEEEECCCchHHH-HH-----HHc-CCcEEEE-ecC
Q 001939 108 KDEVEWLNSIKADLVVSDVVPVACR-AA-----ADA-GIRSVCV-TNF 147 (993)
Q Consensus 108 ~~~~~~L~~~kPDlVVsD~~~~a~l-aA-----~~~-gIP~V~i-~~~ 147 (993)
....++|++.+||+||+.|++++.+ ++ ... ++|++++ +|+
T Consensus 79 ~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~ 126 (169)
T PF06925_consen 79 RRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDF 126 (169)
T ss_pred HHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCC
Confidence 4457789999999999999764443 32 113 5887765 777
No 207
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=89.25 E-value=0.81 Score=54.36 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=52.4
Q ss_pred CHHHHHhhcCEEEecC---Chh-HHHHHHHcCCc----EEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHH
Q 001939 272 YTPDFMAASDCMLGKI---GYG-TVSEALAYKLP----FVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYL 343 (993)
Q Consensus 272 ~~pdlL~~adl~It~~---G~~-Tv~Eal~~GvP----~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l 343 (993)
.++.+++.||+++..+ |+| ++.|+++||+| +|+....+..++ + +.|+.+++.+ ++.+.++|
T Consensus 348 el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~------l---~~gllVnP~d--~~~lA~aI 416 (456)
T TIGR02400 348 ELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQE------L---NGALLVNPYD--IDGMADAI 416 (456)
T ss_pred HHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHH------h---CCcEEECCCC--HHHHHHHH
Confidence 4668899999999754 644 78899999999 887765544443 3 2578888776 57899999
Q ss_pred HHHHhCC
Q 001939 344 ERAISLK 350 (993)
Q Consensus 344 ~~ll~~~ 350 (993)
.++++++
T Consensus 417 ~~aL~~~ 423 (456)
T TIGR02400 417 ARALTMP 423 (456)
T ss_pred HHHHcCC
Confidence 9999866
No 208
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=89.13 E-value=33 Score=39.01 Aligned_cols=84 Identities=13% Similarity=0.191 Sum_probs=51.4
Q ss_pred CCcEEEEEcCCCCCh--h------hHHHhhCCCCcEEEEeCCCC-CC----------CC-CCeE-ECCCCC--CHHHHHh
Q 001939 222 DVKLLILNFGGQPAG--W------KLKEEYLPSGWKCLVCGASD-SQ----------LP-PNFI-KLPKDA--YTPDFMA 278 (993)
Q Consensus 222 ~~~~Vlvs~G~~~~~--~------~ll~~l~~~~~~~vv~G~~~-~~----------l~-~nv~-~~~~~~--~~pdlL~ 278 (993)
++++|.+..|+.... | ++.+.+...++.++++|... .+ .+ +++. +.+..+ .+..+|+
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 259 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALID 259 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHH
Confidence 457788877764331 2 23444444466777776422 11 12 2232 233222 2346788
Q ss_pred hcCEEEecCChhHHHHHHHcCCcEEEEe
Q 001939 279 ASDCMLGKIGYGTVSEALAYKLPFVFVR 306 (993)
Q Consensus 279 ~adl~It~~G~~Tv~Eal~~GvP~l~ip 306 (993)
.||+|||. -.|.+.=|.+.|+|+|.+=
T Consensus 260 ~a~l~Vs~-DSGp~HlAaA~g~p~v~Lf 286 (344)
T TIGR02201 260 HARLFIGV-DSVPMHMAAALGTPLVALF 286 (344)
T ss_pred hCCEEEec-CCHHHHHHHHcCCCEEEEE
Confidence 99999995 4488899999999999974
No 209
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=88.89 E-value=22 Score=38.99 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=28.5
Q ss_pred CHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCC
Q 001939 272 YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRD 308 (993)
Q Consensus 272 ~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~ 308 (993)
.+..++..||++|+.-. +++.=|.+.|+|+|++=.+
T Consensus 191 e~~~li~~~~l~I~~Ds-g~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 191 ELAALLARADLVVTNDS-GPMHLAAALGTPTVALFGP 226 (279)
T ss_pred HHHHHHHhCCEEEeeCC-HHHHHHHHcCCCEEEEECC
Confidence 35678899999999643 6777778999999998643
No 210
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=88.81 E-value=0.9 Score=53.45 Aligned_cols=114 Identities=15% Similarity=0.118 Sum_probs=56.4
Q ss_pred HHHHhCCCCCCcEEEEEcCCCCCh-hhHHH---hhC--CCCcEE-EEeCCCCC-C----------C-CCCeEECCCCCCH
Q 001939 213 VRKELGIEDDVKLLILNFGGQPAG-WKLKE---EYL--PSGWKC-LVCGASDS-Q----------L-PPNFIKLPKDAYT 273 (993)
Q Consensus 213 ~r~~l~~~~~~~~Vlvs~G~~~~~-~~ll~---~l~--~~~~~~-vv~G~~~~-~----------l-~~nv~~~~~~~~~ 273 (993)
.|..+|++ +..++|.++....+- .+.+. +.+ -|+-++ +...+... . + ++.+.+.+..+ .
T Consensus 275 ~R~~~gLp-~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~-~ 352 (468)
T PF13844_consen 275 TRAQYGLP-EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAP-R 352 (468)
T ss_dssp ETGGGT---SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE----H
T ss_pred CHHHcCCC-CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCC-H
Confidence 35678997 445788888655441 12222 111 133333 33333221 0 2 45677665433 2
Q ss_pred HHHH---hhcCEEEe---cCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE
Q 001939 274 PDFM---AASDCMLG---KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM 329 (993)
Q Consensus 274 pdlL---~~adl~It---~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l 329 (993)
.++| ..+|++.- .+|.+|++|||++|||+|.++-..+.- ..-+..|...|+.-.+
T Consensus 353 ~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~s-R~~aSiL~~lGl~ElI 413 (468)
T PF13844_consen 353 EEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMAS-RVGASILRALGLPELI 413 (468)
T ss_dssp HHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGG-SHHHHHHHHHT-GGGB
T ss_pred HHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchh-HHHHHHHHHcCCchhc
Confidence 3444 45999994 357799999999999999999544433 3567788888887443
No 211
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=88.75 E-value=2.2 Score=44.57 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=21.0
Q ss_pred CCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 001939 23 TGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (993)
Q Consensus 23 ~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~ 53 (993)
..-|. +..-..+|+++|++.||+|+++.+.
T Consensus 7 NDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~ 36 (196)
T PF01975_consen 7 NDDGI-DAPGIRALAKALSALGHDVVVVAPD 36 (196)
T ss_dssp -SS-T-TSHHHHHHHHHHTTTSSEEEEEEES
T ss_pred cCCCC-CCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 44443 3444668999998888999999765
No 212
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=88.40 E-value=50 Score=37.47 Aligned_cols=84 Identities=23% Similarity=0.431 Sum_probs=54.1
Q ss_pred CcEEEEEcC-CCCCh--h------hHHHhhCCCCcEEEEeCCCCCC---------CCCCeEECCCCC--CHHHHHhhcCE
Q 001939 223 VKLLILNFG-GQPAG--W------KLKEEYLPSGWKCLVCGASDSQ---------LPPNFIKLPKDA--YTPDFMAASDC 282 (993)
Q Consensus 223 ~~~Vlvs~G-~~~~~--~------~ll~~l~~~~~~~vv~G~~~~~---------l~~nv~~~~~~~--~~pdlL~~adl 282 (993)
++.|++.-| +.+.. + ++.+.+...++.++++|...+. .+..+.+.+..+ .+..+++.||+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l 254 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADL 254 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCE
Confidence 688899888 54331 2 2344455556788888876421 222222444332 34477889999
Q ss_pred EEecCChhHHHHHHHcCCcEEEEeC
Q 001939 283 MLGKIGYGTVSEALAYKLPFVFVRR 307 (993)
Q Consensus 283 ~It~~G~~Tv~Eal~~GvP~l~ip~ 307 (993)
||+.=. |-+.=|.+.|+|+|++=.
T Consensus 255 ~I~~DS-g~~HlAaA~~~P~I~iyg 278 (334)
T COG0859 255 VIGNDS-GPMHLAAALGTPTIALYG 278 (334)
T ss_pred EEccCC-hHHHHHHHcCCCEEEEEC
Confidence 998443 677889999999999853
No 213
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.32 E-value=2.6 Score=49.98 Aligned_cols=110 Identities=18% Similarity=0.131 Sum_probs=68.0
Q ss_pred HHHhCCCCCCcEEEEEcCCCCCh-hhHHHh------hCCCCcEEEEeCCCCCC-------------C-CCCeEECCCCCC
Q 001939 214 RKELGIEDDVKLLILNFGGQPAG-WKLKEE------YLPSGWKCLVCGASDSQ-------------L-PPNFIKLPKDAY 272 (993)
Q Consensus 214 r~~l~~~~~~~~Vlvs~G~~~~~-~~ll~~------l~~~~~~~vv~G~~~~~-------------l-~~nv~~~~~~~~ 272 (993)
|..+|++ +..+||+++++..+- .+++.. ..|..+.++..|..+++ + +..+++.+-.+.
T Consensus 421 R~~lglp-~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~ 499 (620)
T COG3914 421 RAQLGLP-EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPN 499 (620)
T ss_pred hhhcCCC-CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCC
Confidence 5567886 667899999876663 234332 12333333434433321 1 456777766553
Q ss_pred HHHHH---hhcCEEEe---cCChhHHHHHHHcCCcEEEEeCCCCCChHH--H-HHHHHHcCcEEEE
Q 001939 273 TPDFM---AASDCMLG---KIGYGTVSEALAYKLPFVFVRRDYFNEEPF--L-RNMLEFYQGGVEM 329 (993)
Q Consensus 273 ~pdlL---~~adl~It---~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~--n-a~~l~~~G~g~~l 329 (993)
++.. .-||+|.- -+|..|..|++.+|||||..+ +||+. | +..+...|.-..+
T Consensus 500 -~~h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~----G~~FasR~~~si~~~agi~e~v 560 (620)
T COG3914 500 -EDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRV----GEQFASRNGASIATNAGIPELV 560 (620)
T ss_pred -HHHHHhhchhheeeecccCCCccchHHHHHhcCceeeec----cHHHHHhhhHHHHHhcCCchhh
Confidence 3444 44999995 478899999999999999976 46643 2 2444566655444
No 214
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.77 E-value=1 Score=48.90 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=59.6
Q ss_pred HHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCCh--HHHH-HHHHHcCcEEEEecCCCChhhHHHHHHHHHhC
Q 001939 273 TPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEE--PFLR-NMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (993)
Q Consensus 273 ~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ--~~na-~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (993)
+.|+|.++|+.|+.+| ..+-.++-.|||+|.+| ...-| +.-| +...-.|+.+.+-.... ..-..+.++++.+
T Consensus 305 fadiLH~adaalgmAG-TAtEQavGLGkPvi~fP--g~GPQy~pgFA~rQ~rLLG~sltlv~~~a--q~a~~~~q~ll~d 379 (412)
T COG4370 305 FADILHAADAALGMAG-TATEQAVGLGKPVIGFP--GQGPQYNPGFAERQQRLLGASLTLVRPEA--QAAAQAVQELLGD 379 (412)
T ss_pred HHHHHHHHHHHHHhcc-chHHHhhccCCceeecC--CCCCCcChHHHHHHHHHhcceeeecCCch--hhHHHHHHHHhcC
Confidence 4699999999999999 77788999999999999 44444 1222 23345788877765442 2233344448888
Q ss_pred CCCcc----------CCCCHHHHHHHHHHH
Q 001939 350 KPCYE----------GGINGGEVAAHILQE 369 (993)
Q Consensus 350 ~~~~~----------~~~~ga~~~a~~i~~ 369 (993)
+.+.. ..+..+.++|+.+.+
T Consensus 380 p~r~~air~nGqrRiGqaGaa~rIAe~l~e 409 (412)
T COG4370 380 PQRLTAIRHNGQRRIGQAGAARRIAEELGE 409 (412)
T ss_pred hHHHHHHHhcchhhccCcchHHHHHHHHHH
Confidence 75422 345555555555544
No 215
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=84.97 E-value=63 Score=35.12 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=32.4
Q ss_pred CCCeEEC--CCCCCHH-HHHhh--cCEEEecCChh-----HHHHHHHcCCcEEEEeCCC
Q 001939 261 PPNFIKL--PKDAYTP-DFMAA--SDCMLGKIGYG-----TVSEALAYKLPFVFVRRDY 309 (993)
Q Consensus 261 ~~nv~~~--~~~~~~p-dlL~~--adl~It~~G~~-----Tv~Eal~~GvP~l~ip~~~ 309 (993)
+.|+... +|...+. .++.+ +|++||+--++ -+.-|..+|+|+|+|.+|.
T Consensus 167 ~~~iiam~gPfs~e~n~aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~ 225 (248)
T PRK08057 167 RAEIIALRGPFSLELERALLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARPA 225 (248)
T ss_pred hhhEEEeeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCC
Confidence 4565533 4444444 56664 99999974222 2445778899999999874
No 216
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=83.33 E-value=1.1 Score=53.51 Aligned_cols=69 Identities=17% Similarity=0.140 Sum_probs=50.5
Q ss_pred CCHHHHHhhcCEEEecC---Ch-hHHHHHHHcCCc----EEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHH
Q 001939 271 AYTPDFMAASDCMLGKI---GY-GTVSEALAYKLP----FVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPY 342 (993)
Q Consensus 271 ~~~pdlL~~adl~It~~---G~-~Tv~Eal~~GvP----~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~ 342 (993)
+.++.+|+.||+||..+ |+ .++.||+++|+| +|+....+..++ ...|+.+++.+ .+.+.++
T Consensus 352 ~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---------~~~g~lv~p~d--~~~la~a 420 (460)
T cd03788 352 EELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---------LSGALLVNPYD--IDEVADA 420 (460)
T ss_pred HHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh---------cCCCEEECCCC--HHHHHHH
Confidence 35678999999999643 54 478999999999 666543333333 23477787766 4789999
Q ss_pred HHHHHhCC
Q 001939 343 LERAISLK 350 (993)
Q Consensus 343 l~~ll~~~ 350 (993)
|.++++++
T Consensus 421 i~~~l~~~ 428 (460)
T cd03788 421 IHRALTMP 428 (460)
T ss_pred HHHHHcCC
Confidence 99999876
No 217
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=79.95 E-value=7.4 Score=46.36 Aligned_cols=136 Identities=20% Similarity=0.255 Sum_probs=84.4
Q ss_pred hHHHHHHhCCCCCCc-EEEEEcCCCCC--hhh----HHHhhCCCCcEEEEeCCCCCC-----------CCCCeEE-CCCC
Q 001939 210 RKEVRKELGIEDDVK-LLILNFGGQPA--GWK----LKEEYLPSGWKCLVCGASDSQ-----------LPPNFIK-LPKD 270 (993)
Q Consensus 210 ~~~~r~~l~~~~~~~-~Vlvs~G~~~~--~~~----ll~~l~~~~~~~vv~G~~~~~-----------l~~nv~~-~~~~ 270 (993)
+..+++.++++.+.+ .++...|.... +.. .+..++...+++++.|...+. .|.++.+ .+|.
T Consensus 279 k~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~ 358 (487)
T COG0297 279 KVALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGDPELEEALRALASRHPGRVLVVIGYD 358 (487)
T ss_pred HHHHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeec
Confidence 445778888874433 34445555443 222 233455566888998888643 3555554 3444
Q ss_pred CCHH-HHHhhcCEEEec-----CChhHHHHHHHcCCcEEEEeCCCCCChHHHH--HHHHHcCcEEEEecCCCChhhHHHH
Q 001939 271 AYTP-DFMAASDCMLGK-----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLR--NMLEFYQGGVEMIRRDLLTGHWKPY 342 (993)
Q Consensus 271 ~~~p-dlL~~adl~It~-----~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na--~~l~~~G~g~~l~~~~~~~~~l~~~ 342 (993)
..+. .+++.+|+++-. +| .|-+++|.+|++-|+.+..+-.|--... ......|.|...... +++.+..+
T Consensus 359 ~~la~~i~agaD~~lmPSrfEPcG-L~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~--~~~~l~~a 435 (487)
T COG0297 359 EPLAHLIYAGADVILMPSRFEPCG-LTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQT--NPDHLANA 435 (487)
T ss_pred HHHHHHHHhcCCEEEeCCcCcCCc-HHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecC--CHHHHHHH
Confidence 3333 567789999963 46 7899999999988887754433321110 003446777777654 67899999
Q ss_pred HHHHHh
Q 001939 343 LERAIS 348 (993)
Q Consensus 343 l~~ll~ 348 (993)
|.+.+.
T Consensus 436 l~rA~~ 441 (487)
T COG0297 436 LRRALV 441 (487)
T ss_pred HHHHHH
Confidence 998774
No 218
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=79.11 E-value=3.8 Score=44.99 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=37.8
Q ss_pred CCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCC
Q 001939 262 PNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYF 310 (993)
Q Consensus 262 ~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~ 310 (993)
.++.++...-++.++|.+||.+||-.+ ++-.||+.+|+|++++-.+.+
T Consensus 182 ~~~~~~~~~~~~~~Ll~~s~~VvtinS-tvGlEAll~gkpVi~~G~~~Y 229 (269)
T PF05159_consen 182 PNVVIIDDDVNLYELLEQSDAVVTINS-TVGLEALLHGKPVIVFGRAFY 229 (269)
T ss_pred CCeEEECCCCCHHHHHHhCCEEEEECC-HHHHHHHHcCCceEEecCccc
Confidence 444444333457799999999999777 788999999999999986544
No 219
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=78.37 E-value=19 Score=40.55 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=60.4
Q ss_pred CCeEECCCCCCHH-----HHHhhcCEEEec----CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecC
Q 001939 262 PNFIKLPKDAYTP-----DFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRR 332 (993)
Q Consensus 262 ~nv~~~~~~~~~p-----dlL~~adl~It~----~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~ 332 (993)
.|+.++ .+.|| .+|+.||+.|-. -|.|+++=.+.+|+|+++-.... --+.+.+.|+-+....+
T Consensus 245 ~~~~iL--~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~np------~~~~l~~~~ipVlf~~d 316 (360)
T PF07429_consen 245 ENFQIL--TEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDNP------FWQDLKEQGIPVLFYGD 316 (360)
T ss_pred cceeEh--hhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEecCCh------HHHHHHhCCCeEEeccc
Confidence 577764 23344 677889999963 48999999999999999976332 23568888999888888
Q ss_pred CCChhhHHHHHHHHHhC
Q 001939 333 DLLTGHWKPYLERAISL 349 (993)
Q Consensus 333 ~~~~~~l~~~l~~ll~~ 349 (993)
+++...+.++=+++...
T Consensus 317 ~L~~~~v~ea~rql~~~ 333 (360)
T PF07429_consen 317 ELDEALVREAQRQLANV 333 (360)
T ss_pred cCCHHHHHHHHHHHhhC
Confidence 99877787777766543
No 220
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=77.76 E-value=5.5 Score=43.47 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=72.8
Q ss_pred EEEEEcCCCCC--hh-hHHHh---hCC--CCcEEEEeCCCCC-------C-----CCCCeEECCCCC--CHHHHHhhcCE
Q 001939 225 LLILNFGGQPA--GW-KLKEE---YLP--SGWKCLVCGASDS-------Q-----LPPNFIKLPKDA--YTPDFMAASDC 282 (993)
Q Consensus 225 ~Vlvs~G~~~~--~~-~ll~~---l~~--~~~~~vv~G~~~~-------~-----l~~nv~~~~~~~--~~pdlL~~adl 282 (993)
.+++..|.... +. .+++. +.. +++.++++|.... . ..+++.+.++.+ .++.++..+|+
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~ 279 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADV 279 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCE
Confidence 56667776444 22 22222 222 1256677776653 1 236788888776 45678888999
Q ss_pred EEecC---Ch-hHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 283 MLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 283 ~It~~---G~-~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
++... |. .++.|++++|+|+|....+...| .+...+.|...... ..+.+..++..++++.
T Consensus 280 ~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e------~~~~~~~g~~~~~~--~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 280 FVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPE------VVEDGETGLLVPPG--DVEELADALEQLLEDP 343 (381)
T ss_pred EEeccccccchHHHHHHHhcCCcEEECCCCChHH------HhcCCCceEecCCC--CHHHHHHHHHHHhcCH
Confidence 99762 44 35799999999999987543322 24443346533333 3578888888887665
No 221
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=77.49 E-value=5.7 Score=47.95 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=45.8
Q ss_pred HHHhhcCEEEecC---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-CcEEEEecCCC-----ChhhHHHHHH
Q 001939 275 DFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY-QGGVEMIRRDL-----LTGHWKPYLE 344 (993)
Q Consensus 275 dlL~~adl~It~~---G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~-G~g~~l~~~~~-----~~~~l~~~l~ 344 (993)
++++.||++|..+ | +.++.||+++|+|+|.....++.+= .-+.+... ..|+.+..++. ..+.|.++|.
T Consensus 470 E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~--v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~ 547 (590)
T cd03793 470 EFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCF--MEEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMY 547 (590)
T ss_pred HHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhh--hHHHhccCCCceEEEecCCccchHHHHHHHHHHHH
Confidence 7889999999854 3 3599999999999999987666421 11122222 25777764331 2345566666
Q ss_pred HHH
Q 001939 345 RAI 347 (993)
Q Consensus 345 ~ll 347 (993)
+++
T Consensus 548 ~~~ 550 (590)
T cd03793 548 EFC 550 (590)
T ss_pred HHh
Confidence 655
No 222
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=76.41 E-value=28 Score=38.71 Aligned_cols=78 Identities=21% Similarity=0.120 Sum_probs=57.3
Q ss_pred CCeEECCCCCCHH-----HHHhhcCEEEec----CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecC
Q 001939 262 PNFIKLPKDAYTP-----DFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRR 332 (993)
Q Consensus 262 ~nv~~~~~~~~~p-----dlL~~adl~It~----~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~ 332 (993)
+|+.++ .+.|| .+|+.||+.|-. =|.||++=.+.+|+|+++-....+. +.+.+.|+-+..+.+
T Consensus 206 ~~~~~L--~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~fw------qdl~e~gv~Vlf~~d 277 (322)
T PRK02797 206 ENFQIL--TEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDNPFW------QDLTEQGLPVLFTGD 277 (322)
T ss_pred ccEEeh--hhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCCchH------HHHHhCCCeEEecCC
Confidence 788875 23344 678899999963 4899999999999999997643332 347788999888888
Q ss_pred CCChhhHHHHHHHHH
Q 001939 333 DLLTGHWKPYLERAI 347 (993)
Q Consensus 333 ~~~~~~l~~~l~~ll 347 (993)
.++...+.++=+++.
T Consensus 278 ~L~~~~v~e~~rql~ 292 (322)
T PRK02797 278 DLDEDIVREAQRQLA 292 (322)
T ss_pred cccHHHHHHHHHHHH
Confidence 887666666544443
No 223
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=75.11 E-value=5.3 Score=50.86 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=50.3
Q ss_pred HHHHHhhcCEEEecC---Chh-HHHHHHHcCCc----EEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHH
Q 001939 273 TPDFMAASDCMLGKI---GYG-TVSEALAYKLP----FVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLE 344 (993)
Q Consensus 273 ~pdlL~~adl~It~~---G~~-Tv~Eal~~GvP----~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~ 344 (993)
++.+++.||+|+..+ |+| ++.|+++||+| +|+-...+..++ + ...|+.+++.+. +.+.++|.
T Consensus 369 l~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~------l--~~~allVnP~D~--~~lA~AI~ 438 (797)
T PLN03063 369 LCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQS------L--GAGALLVNPWNI--TEVSSAIK 438 (797)
T ss_pred HHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCchhh------h--cCCeEEECCCCH--HHHHHHHH
Confidence 457889999999765 766 78899999999 555444343343 2 125888988774 78999999
Q ss_pred HHHhCC
Q 001939 345 RAISLK 350 (993)
Q Consensus 345 ~ll~~~ 350 (993)
++|..+
T Consensus 439 ~aL~m~ 444 (797)
T PLN03063 439 EALNMS 444 (797)
T ss_pred HHHhCC
Confidence 999855
No 224
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=74.37 E-value=27 Score=37.78 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=19.4
Q ss_pred cHHHHHHHHHHHHHCCCeEEEEeCC
Q 001939 29 HATRVVEVVRNLISAGHDVHVVTGA 53 (993)
Q Consensus 29 H~~ralaLA~aL~~~Gh~V~~v~~~ 53 (993)
|.-=..+|+++|+ .+++|+|+.+.
T Consensus 12 ~a~Gi~aL~~al~-~~~dV~VVAP~ 35 (252)
T COG0496 12 HAPGIRALARALR-EGADVTVVAPD 35 (252)
T ss_pred CCHHHHHHHHHHh-hCCCEEEEccC
Confidence 4444678999999 89999999765
No 225
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=73.08 E-value=3.1 Score=50.29 Aligned_cols=76 Identities=8% Similarity=0.037 Sum_probs=57.2
Q ss_pred CCeEECCCCC--CHHHHHhhcCEEEec---CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCCh
Q 001939 262 PNFIKLPKDA--YTPDFMAASDCMLGK---IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLT 336 (993)
Q Consensus 262 ~nv~~~~~~~--~~pdlL~~adl~It~---~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~ 336 (993)
..|.+.++.. ++-..+..+.++|.. .|.+|..||+++|+|+| .+ .+ ...++...-|..+ .+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqI--ny--g~-----~~~V~d~~NG~li--~d--~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQI--NK--VE-----TDYVEHNKNGYII--DD--I 475 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCee--ec--CC-----ceeeEcCCCcEEe--CC--H
Confidence 5788888887 677888899999964 47789999999999999 21 11 1235555557777 23 4
Q ss_pred hhHHHHHHHHHhCC
Q 001939 337 GHWKPYLERAISLK 350 (993)
Q Consensus 337 ~~l~~~l~~ll~~~ 350 (993)
..|..+|..+|.++
T Consensus 476 ~~l~~al~~~L~~~ 489 (519)
T TIGR03713 476 SELLKALDYYLDNL 489 (519)
T ss_pred HHHHHHHHHHHhCH
Confidence 68899999999877
No 226
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=72.83 E-value=3 Score=47.96 Aligned_cols=152 Identities=18% Similarity=0.192 Sum_probs=73.1
Q ss_pred hHHHHHHhCCCCCCcEEEEEc--CCCCCh-----------hhHHHhhCCCCcEEEEeCCC-----CC---CCCCCeEECC
Q 001939 210 RKEVRKELGIEDDVKLLILNF--GGQPAG-----------WKLKEEYLPSGWKCLVCGAS-----DS---QLPPNFIKLP 268 (993)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~--G~~~~~-----------~~ll~~l~~~~~~~vv~G~~-----~~---~l~~nv~~~~ 268 (993)
.+.+++.++++.++++|+.+- ...... ..-+..+...++.+++--.. .. ....++..+.
T Consensus 179 ~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~~~~~~~~l~~~~~~~~~li~k~Hp~~~~~~~~~~~~~~~i~~~~ 258 (369)
T PF04464_consen 179 RNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFFSDLDFEKLNFLLKNNYVLIIKPHPNMKKKFKDFKEDNSNIIFVS 258 (369)
T ss_dssp HHHHHHHTT--SS-EEEEEE----GGG--GGSS----TT-HHHHHHHHTTTEEEEE--SHHHHTT----TT-TTTEEE-T
T ss_pred HHHHHHHhccCCCCcEEEEeeccccccccccccccccccCHHHHHHHhCCCcEEEEEeCchhhhchhhhhccCCcEEECC
Confidence 456778888887777766652 111110 11111234556665543211 01 1346777765
Q ss_pred CCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHH----HHHHHcCcEEEEecCCCChhhHHHHHH
Q 001939 269 KDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLR----NMLEFYQGGVEMIRRDLLTGHWKPYLE 344 (993)
Q Consensus 269 ~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na----~~l~~~G~g~~l~~~~~~~~~l~~~l~ 344 (993)
....+.++|..||++||--. +.+.|.+.+++|+|+..... |+..+. .-.+....|..+. +.++|..+|+
T Consensus 259 ~~~~~~~ll~~aDiLITDyS-Si~fD~~~l~KPiify~~D~--~~Y~~~rg~~~~~~~~~pg~~~~----~~~eL~~~i~ 331 (369)
T PF04464_consen 259 DNEDIYDLLAAADILITDYS-SIIFDFLLLNKPIIFYQPDL--EEYEKERGFYFDYEEDLPGPIVY----NFEELIEAIE 331 (369)
T ss_dssp T-S-HHHHHHT-SEEEESS--THHHHHGGGT--EEEE-TTT--TTTTTTSSBSS-TTTSSSS-EES----SHHHHHHHHT
T ss_pred CCCCHHHHHHhcCEEEEech-hHHHHHHHhCCCEEEEeccH--HHHhhccCCCCchHhhCCCceeC----CHHHHHHHHH
Confidence 44567799999999999664 68899999999999987432 221000 0012223333332 2457777777
Q ss_pred HHHhCCCCcc-------------CCCCHHHHHHHHHH
Q 001939 345 RAISLKPCYE-------------GGINGGEVAAHILQ 368 (993)
Q Consensus 345 ~ll~~~~~~~-------------~~~~ga~~~a~~i~ 368 (993)
+.+.++..+. ...+..+++++.|.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 332 NIIENPDEYKEKREKFRDKFFKYNDGNSSERIVNYIF 368 (369)
T ss_dssp THHHHHHHTHHHHHHHHHHHSTT--S-HHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHh
Confidence 7665442110 45666777666654
No 227
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=72.73 E-value=18 Score=40.56 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=32.3
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPD 55 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~ 55 (993)
|+++|+.--.|.|=.+-+.++|-++.++|++|.+++.+|.
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa 40 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPA 40 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC
Confidence 3455566566699999999999999999999999998874
No 228
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=72.46 E-value=28 Score=37.93 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=32.2
Q ss_pred EEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 001939 18 FAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPD 55 (993)
Q Consensus 18 Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~ 55 (993)
++++....|.|..+-+.++|..+.+.|++|.++..++.
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 44566677899999999999999999999999977653
No 229
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=67.44 E-value=39 Score=38.17 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=32.4
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPD 55 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~ 55 (993)
++|+|+.--.|.|=.+-+.+.|-.|.+.|..|.+++..|.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPA 41 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPA 41 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 3455566666699999999999999999988988887764
No 230
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=65.92 E-value=3.8 Score=48.32 Aligned_cols=85 Identities=16% Similarity=0.007 Sum_probs=56.6
Q ss_pred HHHhhcCEEEecC-C---hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 275 DFMAASDCMLGKI-G---YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 275 dlL~~adl~It~~-G---~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
.+++.++++...+ + +-|+.|||+||+|+|++...+-.|- ++..--|..+++.+-....|.+++.++..++
T Consensus 361 rl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~Ei------V~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p 434 (495)
T KOG0853|consen 361 RLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEI------VVHGVTGLLIDPGQEAVAELADALLKLRRDP 434 (495)
T ss_pred HHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEE------EEcCCcceeeCCchHHHHHHHHHHHHHhcCH
Confidence 3455576665433 2 1489999999999999985444443 5556668888873322337999999999888
Q ss_pred CCcc-CCCCHHHHHHH
Q 001939 351 PCYE-GGINGGEVAAH 365 (993)
Q Consensus 351 ~~~~-~~~~ga~~~a~ 365 (993)
.... ...+|.+++-+
T Consensus 435 ~l~~~~~~~G~~rV~e 450 (495)
T KOG0853|consen 435 ELWARMGKNGLKRVKE 450 (495)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4432 45555555443
No 231
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=64.71 E-value=20 Score=42.27 Aligned_cols=71 Identities=13% Similarity=0.190 Sum_probs=56.9
Q ss_pred HHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEE-EecCCCChhhHHHHHHHHHhCCC
Q 001939 275 DFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVE-MIRRDLLTGHWKPYLERAISLKP 351 (993)
Q Consensus 275 dlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~-l~~~~~~~~~l~~~l~~ll~~~~ 351 (993)
.++++||++|+.= +-++.=|+..|+|+|.+++ | +.....+...|.... ++.++++.+.|.+.+++++++..
T Consensus 323 ~iIs~~dl~ig~R-lHa~I~a~~~gvP~i~i~Y----~-~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~ 394 (426)
T PRK10017 323 KILGACELTVGTR-LHSAIISMNFGTPAIAINY----E-HKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLP 394 (426)
T ss_pred HHHhhCCEEEEec-chHHHHHHHcCCCEEEeee----h-HHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCHH
Confidence 6788999999843 3456678999999999984 2 466777888988755 77788888899999999998764
No 232
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=63.13 E-value=1e+02 Score=33.59 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=22.9
Q ss_pred cEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 001939 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (993)
Q Consensus 15 ~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~ 53 (993)
+|+||. +..-|. |..=..+|+++|.+.| +|+++.+.
T Consensus 5 ~M~ILl-tNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~ 40 (257)
T PRK13932 5 KPHILV-CNDDGI-EGEGIHVLAASMKKIG-RVTVVAPA 40 (257)
T ss_pred CCEEEE-ECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCC
Confidence 466642 344442 2333568899999887 78888654
No 233
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=60.87 E-value=19 Score=42.48 Aligned_cols=79 Identities=11% Similarity=0.087 Sum_probs=55.3
Q ss_pred CCeEEC-CCCC-CHHHHHhhcCEEEe----cCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCC
Q 001939 262 PNFIKL-PKDA-YTPDFMAASDCMLG----KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLL 335 (993)
Q Consensus 262 ~nv~~~-~~~~-~~pdlL~~adl~It----~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~ 335 (993)
+|++.+ ++.. .+-+++..||+.+. .+-.+++.||+.+|+|++......++.+ .+.. |-.+...+
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~-----~i~~---g~l~~~~~-- 397 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRD-----FIAS---ENIFEHNE-- 397 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCcc-----cccC---CceecCCC--
Confidence 676655 4455 56689999999984 2345699999999999999886543322 1222 44455544
Q ss_pred hhhHHHHHHHHHhCC
Q 001939 336 TGHWKPYLERAISLK 350 (993)
Q Consensus 336 ~~~l~~~l~~ll~~~ 350 (993)
.+.+.++|.++|.++
T Consensus 398 ~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 398 VDQLISKLKDLLNDP 412 (438)
T ss_pred HHHHHHHHHHHhcCH
Confidence 578899999998777
No 234
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=59.75 E-value=29 Score=37.19 Aligned_cols=84 Identities=20% Similarity=0.293 Sum_probs=48.2
Q ss_pred CCCcEEEEEcCCCCCh--h------hHHHhhCCCCcEEEEeCCCCC--C---------CCC-CeEECCCCCCHH---HHH
Q 001939 221 DDVKLLILNFGGQPAG--W------KLKEEYLPSGWKCLVCGASDS--Q---------LPP-NFIKLPKDAYTP---DFM 277 (993)
Q Consensus 221 ~~~~~Vlvs~G~~~~~--~------~ll~~l~~~~~~~vv~G~~~~--~---------l~~-nv~~~~~~~~~p---dlL 277 (993)
.+++.|++..|+.... + ++.+.+....+.++++|...+ . .+. .+.+.+-. .+. .++
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~e~~ali 181 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKT-SLRELAALI 181 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS--HHHHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCC-CHHHHHHHH
Confidence 4677888888775542 1 234445555566777776544 1 122 34454433 344 677
Q ss_pred hhcCEEEecCChhHHHHHHHcCCcEEEEe
Q 001939 278 AASDCMLGKIGYGTVSEALAYKLPFVFVR 306 (993)
Q Consensus 278 ~~adl~It~~G~~Tv~Eal~~GvP~l~ip 306 (993)
..||++||.=. +.+.=|.+.|+|+|++=
T Consensus 182 ~~a~~~I~~Dt-g~~HlA~a~~~p~v~lf 209 (247)
T PF01075_consen 182 SRADLVIGNDT-GPMHLAAALGTPTVALF 209 (247)
T ss_dssp HTSSEEEEESS-HHHHHHHHTT--EEEEE
T ss_pred hcCCEEEecCC-hHHHHHHHHhCCEEEEe
Confidence 88999999544 88899999999999984
No 235
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=57.77 E-value=5.6 Score=45.75 Aligned_cols=47 Identities=21% Similarity=0.090 Sum_probs=37.1
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
.-.+.++.|+.++|++. +..|. +.+-..+|+|.| |||.|||..|++.
T Consensus 354 ~~eSL~~~p~~mth~~~-----~e~~~-~~Gi~~~LVRvSVGiEd~~dL~~d~~~ 402 (409)
T KOG0053|consen 354 GNESLAEPPAIMTHASE-----LEERE-KFGIDPNLVRVSVGIEDIEDLIKDFQQ 402 (409)
T ss_pred ccchhhcchhhhccCCC-----HHHHH-hcCCCCCcEEEEeccCCHHHHHHHHHH
Confidence 44457888999999963 33344 777799999999 9999999999865
No 236
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=55.43 E-value=5.1 Score=47.34 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=36.8
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
...+.+..|...+|.+. .+..+. ..+.+++++|++ +||+|||..||+.
T Consensus 378 ~~~sLi~~p~~~~h~~~----~~~~~~-~~gi~~~liRlSvGlEd~~dli~dl~~ 427 (436)
T PRK07812 378 DVRSLVIHPASTTHSQL----TPEEQL-ATGVTPGLVRLAVGIEGIDDILADLEA 427 (436)
T ss_pred CCcceeeCCCCCCcccC----CHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 44556677777787765 444444 677789999999 8999999999876
No 237
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=55.11 E-value=1.8 Score=51.10 Aligned_cols=48 Identities=17% Similarity=0.066 Sum_probs=38.1
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
...+.+..|..++|.+. ++..+. +.+.+++|+|+| |||+|||..||+.
T Consensus 374 ~~~sl~~~p~~~~h~~~----~~~~~~-~~gi~~~liRlsvGlEd~~dL~~Dl~~ 423 (431)
T PRK08248 374 DSKSLIIHPASTTHQQL----SEEEQL-AAGVTPGLVRLSVGTEAIDDILDDLRQ 423 (431)
T ss_pred CCCeeeeCCCcCccccC----CHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 45556777888888866 555555 678899999999 8999999999875
No 238
>PLN02509 cystathionine beta-lyase
Probab=54.48 E-value=1.8 Score=51.37 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=38.5
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
...+.++.|+..+|.+. ++..+. +.+.+++++|++ |||+|||..||+.
T Consensus 408 ~~~SLi~~p~~~sh~~~----~~~~~~-~~Gi~~~liRlSvGlE~~~DLi~Dl~~ 457 (464)
T PLN02509 408 SVKSLISMPCFMSHASI----PAEVRE-ARGLTEDLVRISAGIEDVDDLISDLDI 457 (464)
T ss_pred CCCceeeCCcccccccC----CHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 45557788888888865 555555 677899999999 8999999999875
No 239
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=54.17 E-value=2.9 Score=49.15 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=38.5
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
.+.+.+..|..++|.+. ++..+. +.+.+++|+|++ +||+|||..||+.
T Consensus 366 ~~~sl~~~~~~~~h~~~----~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 415 (418)
T TIGR01326 366 DAKSLVIHPASTTHQQL----SEEEQL-KAGVTPGLIRLSVGIENIDDIIADLEQ 415 (418)
T ss_pred CCCceeeCCCCCCcccC----CHHHHH-hcCCCCCeEEEEecCCCHHHHHHHHHH
Confidence 56667788888888865 555554 678889999999 8999999999864
No 240
>PRK07049 methionine gamma-lyase; Validated
Probab=54.02 E-value=2.1 Score=50.53 Aligned_cols=48 Identities=21% Similarity=0.039 Sum_probs=37.5
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
...+.+..|+..+|++. .+..+. +.+.+++|+|+| |||+|||..||+.
T Consensus 373 ~~~sli~~~~~~~h~~~----~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 422 (427)
T PRK07049 373 GTESLASHPASMTHSGV----PADVRE-RIGVLESTIRLSIGIEHPDDLIADLAQ 422 (427)
T ss_pred CCCceeeCCCccccccC----CHHHHH-hcCCCcCeEEEEeCcCCHHHHHHHHHH
Confidence 56667888888888765 444444 567789999999 8999999999875
No 241
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=52.97 E-value=45 Score=29.58 Aligned_cols=52 Identities=15% Similarity=0.029 Sum_probs=36.4
Q ss_pred ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcC-cEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 288 GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQ-GGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 288 G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G-~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
-...+.|++++|+|+|.-+. ......+ ..| -++..+ +.++|.+.|..+++++
T Consensus 11 ~~~r~~E~~a~G~~vi~~~~------~~~~~~~-~~~~~~~~~~----~~~el~~~i~~ll~~~ 63 (92)
T PF13524_consen 11 PNMRIFEAMACGTPVISDDS------PGLREIF-EDGEHIITYN----DPEELAEKIEYLLENP 63 (92)
T ss_pred CchHHHHHHHCCCeEEECCh------HHHHHHc-CCCCeEEEEC----CHHHHHHHHHHHHCCH
Confidence 34579999999999999652 2233333 334 454444 4689999999999887
No 242
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=50.22 E-value=7.2 Score=45.97 Aligned_cols=48 Identities=13% Similarity=0.009 Sum_probs=37.4
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
...+.+..|.+.+|.+. .+..+. +.+.++.++|++ |||+|||..||+.
T Consensus 369 ~~~slv~~p~~~~h~~~----~~~~~~-~~gi~~~liR~svGlEd~~dLi~dl~~ 418 (425)
T PRK06084 369 DAKSLACHPASTTHRQL----NDEELE-KAGVSRDMVRLSIGIEHIDDIIADLAQ 418 (425)
T ss_pred CCceeeeCCCcCCcccC----CHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 45556777888888865 444444 677899999999 8999999999875
No 243
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=50.18 E-value=75 Score=35.91 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCcEEE-ECC--CchHHHHHHHcCCcEEEEec
Q 001939 118 KADLVV-SDV--VPVACRAAADAGIRSVCVTN 146 (993)
Q Consensus 118 kPDlVV-sD~--~~~a~laA~~~gIP~V~i~~ 146 (993)
.||+|| .|. ...+..=|..+|||+|++.|
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivD 183 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVD 183 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEee
Confidence 699988 454 56777889999999999843
No 244
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=50.03 E-value=1.5e+02 Score=32.11 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHCCCeEEEEeCC
Q 001939 32 RVVEVVRNLISAGHDVHVVTGA 53 (993)
Q Consensus 32 ralaLA~aL~~~Gh~V~~v~~~ 53 (993)
-..+|+++|++.| +|+++.+.
T Consensus 15 Gi~aL~~~l~~~g-~V~VvAP~ 35 (244)
T TIGR00087 15 GIRALYQALKELG-EVTVVAPA 35 (244)
T ss_pred hHHHHHHHHHhCC-CEEEEeCC
Confidence 3568899999988 89888654
No 245
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=48.90 E-value=27 Score=36.13 Aligned_cols=93 Identities=18% Similarity=0.226 Sum_probs=43.2
Q ss_pred ecCCCCcccHHHHHHHHHHHHHC--CCeEEEEeCCCCcc--cccccCCCceEEeeeeccCCccccCccccChHHHHHHHH
Q 001939 21 YVTGHGFGHATRVVEVVRNLISA--GHDVHVVTGAPDFV--FTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYS 96 (993)
Q Consensus 21 ~v~g~G~GH~~ralaLA~aL~~~--Gh~V~~v~~~~~~~--~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 96 (993)
.++....|-+..+.+|+++|+++ ++.|.+-+..+... ...... +.+ .+.+ +..|..
T Consensus 25 WiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~-~~v-------~~~~-----~P~D~~------- 84 (186)
T PF04413_consen 25 WIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP-DRV-------DVQY-----LPLDFP------- 84 (186)
T ss_dssp EEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G-GG--------SEEE--------SSH-------
T ss_pred EEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC-CCe-------EEEE-----eCccCH-------
Confidence 34566789999999999999987 77777766544211 111110 000 0000 111211
Q ss_pred HHhhccHHHhHHHHHHHHhcCCCcEEEE-CCCchH--HHHHHHcCCcEEEE
Q 001939 97 ETAVAPRKSILKDEVEWLNSIKADLVVS-DVVPVA--CRAAADAGIRSVCV 144 (993)
Q Consensus 97 ~~~~~~~~~~l~~~~~~L~~~kPDlVVs-D~~~~a--~laA~~~gIP~V~i 144 (993)
....++|+.++||++|. ....+. ...++..|||++.+
T Consensus 85 -----------~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~Lv 124 (186)
T PF04413_consen 85 -----------WAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLV 124 (186)
T ss_dssp -----------HHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEE
T ss_pred -----------HHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEE
Confidence 11245678999999984 444444 33456779999987
No 246
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=48.53 E-value=3.6 Score=47.99 Aligned_cols=48 Identities=17% Similarity=0.049 Sum_probs=37.8
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
.+.+.+..|...+|.+. ++..+. +.+.+++++|+| |||+|||..||+.
T Consensus 342 ~~~sl~~~p~~~~~~~~----~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 391 (398)
T PRK07504 342 DAKSLITHPATTTHKNL----SPEARA-ELGISEGFLRLSAGLEDTDDLIEDLAA 391 (398)
T ss_pred CCCeeeeCCCCCCcccC----CHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 55667777888888865 455544 677789999999 8999999999875
No 247
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=47.63 E-value=2.6 Score=48.88 Aligned_cols=48 Identities=23% Similarity=0.138 Sum_probs=35.2
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
.+.+.+..|.-.+|.+. +|..+. +.+-+++|+|+| +||+|||..||+.
T Consensus 325 ~~~sl~~~p~~~~~~~~----~~~~~~-~~gi~~~liR~svGlE~~~dli~dl~~ 374 (380)
T PRK06176 325 GVESLVGIPAFMTHACI----PKEQRE-AAGIRDGLVRLSVGIEHEQDLLEDLEQ 374 (380)
T ss_pred CCCceeeCCcccccccC----CHHHHH-hcCCCcCeEEEEeccCCHHHHHHHHHH
Confidence 34445666766666655 444444 667789999999 8999999999865
No 248
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=47.43 E-value=2.9 Score=48.81 Aligned_cols=48 Identities=17% Similarity=0.072 Sum_probs=37.0
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
.+.+.+..|...+|.+. ++..+. ..+.+++++|+| |||+|||..||+.
T Consensus 340 ~~~sl~~~~~~~~~~~~----~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 389 (398)
T PRK08249 340 AVETIYGPARTTSHVEN----TLEERA-ALGIPEGLVRISVGIEDTEDLIADLEQ 389 (398)
T ss_pred CCCceeeCCcccccccC----CHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 45556777778888765 454444 567789999999 8999999999875
No 249
>PRK06434 cystathionine gamma-lyase; Validated
Probab=46.28 E-value=2.7 Score=48.78 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=36.4
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
.+.+.+..|...+|.+. .+..+. +.+-+++|+|++ |||+|||..||+.
T Consensus 331 ~~~sl~~~p~~~~h~~~----~~e~~~-~~gi~~~liRlsvGlEd~~dLi~dl~~ 380 (384)
T PRK06434 331 GVESLITLPVETSHSSL----SPEERE-RLGISDNLVRFSIGIEDIDDLIKDIEN 380 (384)
T ss_pred CCCeeeECCCccccccC----CHHHHH-hcCCCcCeEEEEeCcCCHHHHHHHHHH
Confidence 34556777777777765 444444 677789999999 8999999999864
No 250
>PRK06767 methionine gamma-lyase; Provisional
Probab=45.78 E-value=3.7 Score=47.70 Aligned_cols=48 Identities=19% Similarity=0.083 Sum_probs=35.6
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
...+.+..|...+|... +|..+. +.+.++.++|+| |||+|||..||+.
T Consensus 332 ~~~sl~~~p~~~~~~~~----~~~~~~-~~gi~~~l~R~svGlE~~~dl~~dl~~ 381 (386)
T PRK06767 332 DTETLIQHPATMTHAAI----PAELRQ-EMGIYDNLIRLSVGLESWEDIVSDLEQ 381 (386)
T ss_pred CcCccccCCCccccccC----CHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 44556666777777655 444444 567789999999 8999999999875
No 251
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=44.97 E-value=1.1e+02 Score=33.11 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=22.8
Q ss_pred CcEEE-ECC--CchHHHHHHHcCCcEEEEec
Q 001939 119 ADLVV-SDV--VPVACRAAADAGIRSVCVTN 146 (993)
Q Consensus 119 PDlVV-sD~--~~~a~laA~~~gIP~V~i~~ 146 (993)
||+++ .|. .-.|..-|..+|||+|.+.|
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvD 187 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVD 187 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEec
Confidence 99888 566 55777789999999999843
No 252
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=44.90 E-value=72 Score=32.10 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=28.6
Q ss_pred HHH-hhcCEEEecC-ChhH---HHHHHHcCCcEEEEeCCCCCCh
Q 001939 275 DFM-AASDCMLGKI-GYGT---VSEALAYKLPFVFVRRDYFNEE 313 (993)
Q Consensus 275 dlL-~~adl~It~~-G~~T---v~Eal~~GvP~l~ip~~~~~EQ 313 (993)
.+| ..+|+||.-+ |.|| +.|++.+++|+++++..++.+-
T Consensus 86 ~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~g~~~~ 129 (159)
T TIGR00725 86 FILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGTGGWTD 129 (159)
T ss_pred HHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECCCcchH
Confidence 455 4599999754 5555 5688999999999997765543
No 253
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=44.40 E-value=3.4 Score=48.05 Aligned_cols=48 Identities=17% Similarity=0.061 Sum_probs=36.6
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
.+.+.+..|...+|.+. ++..+. +.+.+++++|++ +||+|||..||+.
T Consensus 329 ~~~sl~~~~~~~~~~~~----~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 378 (386)
T PRK08045 329 GVESLISHAATMTHAGM----APEARA-AAGISETLLRISTGIEDGEDLIADLEN 378 (386)
T ss_pred CCceeEeCCCCcccccC----CHHHHH-hcCCCCCeEEEEeCcCCHHHHHHHHHH
Confidence 44556677777887765 444444 677789999999 8999999999875
No 254
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=44.19 E-value=67 Score=32.96 Aligned_cols=35 Identities=20% Similarity=0.503 Sum_probs=23.6
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCe--EE-EEeCCC
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHD--VH-VVTGAP 54 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~--V~-~v~~~~ 54 (993)
|||+|+++|.| +-...+.++|.+.+++ +. +++..+
T Consensus 1 mrI~~~~Sg~~----~~~~~~l~~l~~~~~~~~iv~Vit~~~ 38 (181)
T PF00551_consen 1 MRIVFFGSGSG----SFLKALLEALKARGHNVEIVLVITNPD 38 (181)
T ss_dssp EEEEEEESSSS----HHHHHHHHHHHTTSSEEEEEEEEESST
T ss_pred CEEEEEEcCCC----HHHHHHHHHHHhCCCCceEEEEecccc
Confidence 67877766554 4466678999999997 44 445443
No 255
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=42.90 E-value=72 Score=35.81 Aligned_cols=101 Identities=20% Similarity=0.064 Sum_probs=55.4
Q ss_pred hhCCCCcEEEEe-CCCCCC--------CCCCeEECCCCCCHH---HHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCC
Q 001939 242 EYLPSGWKCLVC-GASDSQ--------LPPNFIKLPKDAYTP---DFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY 309 (993)
Q Consensus 242 ~l~~~~~~~vv~-G~~~~~--------l~~nv~~~~~~~~~p---dlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~ 309 (993)
.+...+..++++ |...+. ..+++.+.+.. .+. .++++||+|||.-. |.+.=|.+.|+|+|++=.+.
T Consensus 205 ~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~-sL~elaali~~a~l~I~nDS-Gp~HlA~A~g~p~valfGpt 282 (322)
T PRK10964 205 LLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKL-SLEQVARVLAGAKAVVSVDT-GLSHLTAALDRPNITLYGPT 282 (322)
T ss_pred HHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCC-CHHHHHHHHHhCCEEEecCC-cHHHHHHHhCCCEEEEECCC
Confidence 343346666665 543211 12334444433 344 67788999999544 78889999999999985332
Q ss_pred CCChH----HHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHh
Q 001939 310 FNEEP----FLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAIS 348 (993)
Q Consensus 310 ~~EQ~----~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~ 348 (993)
..... .|...+... . --..+++++.+.++++++|+
T Consensus 283 ~p~~~~p~~~~~~~~~~~--~--~cm~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 283 DPGLIGGYGKNQHACRSP--G--KSMADLSAETVFQKLETLIS 321 (322)
T ss_pred CcccccCCCCCceeecCC--C--cccccCCHHHHHHHHHHHhh
Confidence 11110 011101000 0 11346777777777777763
No 256
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=42.86 E-value=4 Score=47.56 Aligned_cols=47 Identities=11% Similarity=0.127 Sum_probs=35.7
Q ss_pred CCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 401 PGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 401 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
.++.+..|..++|++. ++..+. +.+.+++++|++ +||.|||..||+.
T Consensus 338 ~~sl~~~p~~~~~~~~----~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 386 (390)
T PRK08133 338 TKTTITHPATTTHGRL----SPEARA-AAGITEGLIRVAVGLEDVADIKADLAR 386 (390)
T ss_pred cceeeecCCCCCcccC----CHHHHH-hcCCCCCeEEEEeCcCCHHHHHHHHHH
Confidence 4456777877877765 444444 667789999999 8999999999875
No 257
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=42.81 E-value=21 Score=45.26 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=47.2
Q ss_pred CHHHHHhhcCEEEecC---Chh-HHHHHHHcCCc---EEEEe-CCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHH
Q 001939 272 YTPDFMAASDCMLGKI---GYG-TVSEALAYKLP---FVFVR-RDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYL 343 (993)
Q Consensus 272 ~~pdlL~~adl~It~~---G~~-Tv~Eal~~GvP---~l~ip-~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l 343 (993)
.++.+++.||+|+..+ |+| ++.|++++|+| ++++. ..+..++ + .-|+.+++.+ ++.+.++|
T Consensus 354 ~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~------l---~~~llv~P~d--~~~la~ai 422 (726)
T PRK14501 354 ELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAE------L---AEALLVNPND--IEGIAAAI 422 (726)
T ss_pred HHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhHH------h---CcCeEECCCC--HHHHHHHH
Confidence 4668999999999754 544 78899999775 33332 2222222 2 2378888876 47899999
Q ss_pred HHHHhCC
Q 001939 344 ERAISLK 350 (993)
Q Consensus 344 ~~ll~~~ 350 (993)
.+++.++
T Consensus 423 ~~~l~~~ 429 (726)
T PRK14501 423 KRALEMP 429 (726)
T ss_pred HHHHcCC
Confidence 9999765
No 258
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=42.41 E-value=3.2e+02 Score=29.79 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeCC
Q 001939 30 ATRVVEVVRNLISAGHDVHVVTGA 53 (993)
Q Consensus 30 ~~ralaLA~aL~~~Gh~V~~v~~~ 53 (993)
..=..+|+++|++ +|+|+++.+.
T Consensus 13 a~Gi~aL~~~l~~-~~~V~VvAP~ 35 (253)
T PRK13935 13 SPGIIILAEYLSE-KHEVFVVAPD 35 (253)
T ss_pred CHHHHHHHHHHHh-CCcEEEEccC
Confidence 3336688999975 5799888664
No 259
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=42.36 E-value=2.4e+02 Score=30.66 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEEeCC
Q 001939 30 ATRVVEVVRNLISAGHDVHVVTGA 53 (993)
Q Consensus 30 ~~ralaLA~aL~~~Gh~V~~v~~~ 53 (993)
..-..+|+++|.+. |+|+++.+.
T Consensus 13 a~Gi~aL~~~l~~~-~~V~VvAP~ 35 (250)
T PRK00346 13 APGIRALAEALREL-ADVTVVAPD 35 (250)
T ss_pred ChhHHHHHHHHHhC-CCEEEEeCC
Confidence 33366889999988 799988665
No 260
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=42.21 E-value=47 Score=34.16 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=32.9
Q ss_pred HHhhcCEEEec-CChhHHHHHHH---------cCCcEEEEeCCCCCChHHH-HHHHHHcCc
Q 001939 276 FMAASDCMLGK-IGYGTVSEALA---------YKLPFVFVRRDYFNEEPFL-RNMLEFYQG 325 (993)
Q Consensus 276 lL~~adl~It~-~G~~Tv~Eal~---------~GvP~l~ip~~~~~EQ~~n-a~~l~~~G~ 325 (993)
++..+|+||.- ||.||+-|.+. +.+|++++....+.+.... .+.+.+.|.
T Consensus 93 m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gf 153 (178)
T TIGR00730 93 MAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGF 153 (178)
T ss_pred HHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCC
Confidence 44569999984 56788776532 4999999986556554221 245666654
No 261
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=42.17 E-value=1.4e+02 Score=29.92 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=31.7
Q ss_pred EEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 001939 18 FAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (993)
Q Consensus 18 Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~ 54 (993)
|.+...-.|.|=.+-+..||..|.+.|++|.++-..+
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4556777889999999999999999999999986654
No 262
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=42.16 E-value=50 Score=32.07 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=31.1
Q ss_pred HHhhcCEEEe-cCChhHHHHHH---H------cCC-cEEEEeCCCCCChHHH-HHHHHHcCc
Q 001939 276 FMAASDCMLG-KIGYGTVSEAL---A------YKL-PFVFVRRDYFNEEPFL-RNMLEFYQG 325 (993)
Q Consensus 276 lL~~adl~It-~~G~~Tv~Eal---~------~Gv-P~l~ip~~~~~EQ~~n-a~~l~~~G~ 325 (993)
++..+|+||. .||.||+.|.. + +.+ |++++...+|.+.... .+.+.+.|.
T Consensus 50 m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~ 111 (133)
T PF03641_consen 50 MIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGF 111 (133)
T ss_dssp HHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTS
T ss_pred HHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCC
Confidence 4567999996 56778876654 3 345 9999997656554222 234555554
No 263
>PRK07671 cystathionine beta-lyase; Provisional
Probab=41.08 E-value=4.1 Score=47.23 Aligned_cols=48 Identities=27% Similarity=0.165 Sum_probs=36.2
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
...+.+..|...+|.+. .+..+. +.+.++.++|+| +||+|||..||+.
T Consensus 325 ~~~sl~~~~~~~~~~~~----~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 374 (377)
T PRK07671 325 AVESLISIPSQMTHASI----PADRRK-ELGITDGLIRISVGIEDGEDLIEDLAQ 374 (377)
T ss_pred CCCeEeECCCccccccC----CHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 45556777777777765 444444 667789999999 8999999999864
No 264
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=40.98 E-value=4.1 Score=48.17 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=33.7
Q ss_pred CCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 401 PGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 401 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
..+.+..|...+|... ++..+. +.+-+++++|+| +||+|||..||+.
T Consensus 384 ~~sLv~~p~~~~h~~~----~~~~~~-~~Gi~~~liRlsvGlE~~~dLi~Dl~~ 432 (437)
T PRK05613 384 VRSLVVHPATTTHSQS----DEAGLA-RAGITQATVRLSVGIEDIDDIIADLEG 432 (437)
T ss_pred CchhhcCCCccCCccC----CHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 3445555666666544 444444 567789999999 8999999999875
No 265
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=40.75 E-value=2.3e+02 Score=30.92 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=15.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCC
Q 001939 33 VVEVVRNLISAGHDVHVVTGA 53 (993)
Q Consensus 33 alaLA~aL~~~Gh~V~~v~~~ 53 (993)
..+|+++|++ +|+|+++.+.
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~ 35 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPE 35 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccC
Confidence 6688999976 6899988654
No 266
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=40.59 E-value=3.8 Score=48.39 Aligned_cols=47 Identities=23% Similarity=0.169 Sum_probs=35.3
Q ss_pred CCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 401 PGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 401 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
..+.+..|...+|++. ++..+. ..+.+++|+|++ +||+|||..||+.
T Consensus 375 ~~sL~~~p~~~~h~~~----~~~~~~-~~Gi~~~liRlsvGlE~~~dli~dl~~ 423 (433)
T PRK08134 375 ARSLVIHPASTTHFRM----DAAALA-AAGIGEGTIRLSIGLEDADDLIDDLKR 423 (433)
T ss_pred CCceeeCCCccCcccC----CHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 3445666777777765 444444 677789999999 8999999999876
No 267
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=40.33 E-value=4.2 Score=47.32 Aligned_cols=48 Identities=15% Similarity=0.018 Sum_probs=35.0
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
...+.+..|.-.+|.+. ++..+. +.+.+.+++|+| +||+|||..||+.
T Consensus 330 ~~~sl~~~p~~~~h~~~----~~~~~~-~~gi~~~liRlsvGlE~~~dli~Dl~~ 379 (388)
T PRK08861 330 GVESLICHPASMTHRAM----GEEALA-EAGVSQQLLRLSVGLEDAQDLIADLDQ 379 (388)
T ss_pred CCcceeeCCCccccccc----CHHHHH-hcCCCCCeEEEEeCcCCHHHHHHHHHH
Confidence 34455666666666654 444444 567789999999 8999999999876
No 268
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=40.33 E-value=1.5e+02 Score=30.80 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=26.5
Q ss_pred ecCCCCcccHHHHHHHHHHHHHCCCeEEEE
Q 001939 21 YVTGHGFGHATRVVEVVRNLISAGHDVHVV 50 (993)
Q Consensus 21 ~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v 50 (993)
+.+|.|.|-.+.++.++-.....|++|.++
T Consensus 27 v~~g~GkGKtt~a~g~a~ra~g~G~~V~iv 56 (191)
T PRK05986 27 VHTGNGKGKSTAAFGMALRAVGHGKKVGVV 56 (191)
T ss_pred EECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 347999999999999999999999999866
No 269
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=39.22 E-value=4.5 Score=47.71 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=34.1
Q ss_pred CCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 401 PGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 401 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
..+.+..|...+|.+. ++..+. ..+.+++++|++ +||+|||..||+.
T Consensus 374 ~~sl~~~p~~~~h~~~----~~~~~~-~~gi~~~liRlsvGlE~~~dli~dl~~ 422 (427)
T PRK05994 374 TRSLVIHPASTTHRQL----TDEQKV-AAGAGPDVVRLSIGIEDVDDIIADLEQ 422 (427)
T ss_pred CcceeeCCCCCCcccC----CHHHHH-hcCCCCCcEEEEeccCCHHHHHHHHHH
Confidence 4445666777777755 333333 567789999999 8999999999875
No 270
>PRK06460 hypothetical protein; Provisional
Probab=39.12 E-value=4.1 Score=47.18 Aligned_cols=47 Identities=23% Similarity=0.125 Sum_probs=33.6
Q ss_pred CCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 401 PGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 401 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
.++.+..|..++|... .+..+. +.+.++.++|+| +||+|||..||+.
T Consensus 322 ~~sl~~~p~~~~~~~~----~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 370 (376)
T PRK06460 322 VNSVISHPATMSHRTL----SLEERK-IVGITDSLLRLSVGIEDVNDLIEDLDR 370 (376)
T ss_pred CceEEeCccccccccC----CHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 3445556666666654 333333 566788999999 8999999999875
No 271
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=38.60 E-value=1e+02 Score=31.68 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=24.2
Q ss_pred CcEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEE
Q 001939 14 KHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVV 50 (993)
Q Consensus 14 ~~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v 50 (993)
+.+.++ ++-|.| ||..-++.|.++|.++--.-.++
T Consensus 37 ~s~~~l-VvlGSG-GHT~EMlrLl~~l~~~y~~r~yI 71 (211)
T KOG3339|consen 37 KSLSTL-VVLGSG-GHTGEMLRLLEALQDLYSPRSYI 71 (211)
T ss_pred CcceEE-EEEcCC-CcHHHHHHHHHHHHhhcCceEEE
Confidence 334553 345666 99999999999998774444444
No 272
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=38.28 E-value=5.9 Score=46.13 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=33.7
Q ss_pred CCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 401 PGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 401 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
+.+.+..|...+|.+. .+..+. ..+-+..++|+| +||+|||..||+.
T Consensus 338 ~~sl~~~~~~~~~~~~----~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 386 (391)
T TIGR01328 338 AETLIQHPASMTHAVV----PKEERE-AAGITDGMIRLSVGLEDADDLIADLKQ 386 (391)
T ss_pred CcccCcCCCccccccC----CHHHHH-hcCCCCCeEEEEeCcCCHHHHHHHHHH
Confidence 4445666666666654 344443 566688999999 8999999999875
No 273
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=38.17 E-value=5 Score=46.52 Aligned_cols=47 Identities=23% Similarity=0.163 Sum_probs=34.4
Q ss_pred CCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 401 PGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 401 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
..+.+..|..++|... +|..+. +.+.++.++|++ +||+|||..||+.
T Consensus 323 ~~sl~~~p~~~~~~~~----~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 371 (378)
T TIGR01329 323 VNSLISMPCFMSHASI----PAEVRE-ERGLPEDLVRLSVGIEDVDDLISDLDI 371 (378)
T ss_pred CCceeeCCCccccccC----CHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 3345666777777654 444444 667789999999 8999999999875
No 274
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=37.59 E-value=68 Score=38.47 Aligned_cols=66 Identities=17% Similarity=0.090 Sum_probs=50.2
Q ss_pred HHHHhhcCEEEecC---ChhH-HHHHHHcCC----cEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHH
Q 001939 274 PDFMAASDCMLGKI---GYGT-VSEALAYKL----PFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLER 345 (993)
Q Consensus 274 pdlL~~adl~It~~---G~~T-v~Eal~~Gv----P~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ 345 (993)
..+++.||+++..+ |+|. ..|.++++. |+|+-...+..+| ..-++.+++.+. +.+.++|.+
T Consensus 376 ~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGaa~~---------l~~AllVNP~d~--~~~A~ai~~ 444 (487)
T TIGR02398 376 SAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGAAVE---------LKGALLTNPYDP--VRMDETIYV 444 (487)
T ss_pred HHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccccchhh---------cCCCEEECCCCH--HHHHHHHHH
Confidence 36778899999755 8884 559999988 7777654443333 345889998874 789999999
Q ss_pred HHhCC
Q 001939 346 AISLK 350 (993)
Q Consensus 346 ll~~~ 350 (993)
+|+.+
T Consensus 445 AL~m~ 449 (487)
T TIGR02398 445 ALAMP 449 (487)
T ss_pred HHcCC
Confidence 99887
No 275
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=37.58 E-value=3.1e+02 Score=30.11 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=22.1
Q ss_pred HHhcCCCcEEEECC----------Cch----HHHHHHHcCCcEEEEec
Q 001939 113 WLNSIKADLVVSDV----------VPV----ACRAAADAGIRSVCVTN 146 (993)
Q Consensus 113 ~L~~~kPDlVVsD~----------~~~----a~laA~~~gIP~V~i~~ 146 (993)
++...+||+||+.. .+. |.+-|...|||.+.++-
T Consensus 82 ~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 82 VMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred hcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 34336899999732 222 33445667999999864
No 276
>PRK06234 methionine gamma-lyase; Provisional
Probab=36.21 E-value=5.8 Score=46.32 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=34.6
Q ss_pred CCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 401 PGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 401 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
..+.+..|.+.+|.+. .+..+. +.+-++.++|+| +||+|||..||+.
T Consensus 345 ~~sl~~~p~~~~~~~~----~~~~~~-~~gi~~~l~R~svGlE~~~dl~~dl~~ 393 (400)
T PRK06234 345 AETLIQHPASMTHSPY----TAEERK-EAGISDGLVRLSVGLEDVDDIIADLKQ 393 (400)
T ss_pred CCceecCCccCCCCCC----CHHHHH-hcCCCCCeEEEEeCCCCHHHHHHHHHH
Confidence 3445666777777655 344443 567789999999 8999999999875
No 277
>PRK05939 hypothetical protein; Provisional
Probab=36.17 E-value=6.1 Score=46.10 Aligned_cols=48 Identities=23% Similarity=0.021 Sum_probs=35.0
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
...+.+..|...+|.+. .+..++ ..+.+++++|++ +||+|||..||+.
T Consensus 343 ~~~sl~~~p~~~~~~~~----~~~~~~-~~gi~~~lvR~svGlEd~~dLi~dl~~ 392 (397)
T PRK05939 343 DTRTLVIPVAPTIYYEM----GAERRA-SMGIADSLIRVSVGIEDEADLIADFEQ 392 (397)
T ss_pred CCCeeeecCcccccccC----CHHHHH-hcCCCCCeEEEEeCCCCHHHHHHHHHH
Confidence 34445556667777655 444444 567789999999 8999999999865
No 278
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=35.82 E-value=3.5e+02 Score=27.27 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=25.6
Q ss_pred cCCCCcccHHHHHHHHHHHHHCCCeEEEE
Q 001939 22 VTGHGFGHATRVVEVVRNLISAGHDVHVV 50 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~~~Gh~V~~v 50 (993)
.+|.|.|-.+.++.+|-....+|+.|.|+
T Consensus 8 y~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 8 YTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 36889999999999999999999999874
No 279
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=35.81 E-value=3.2e+02 Score=27.88 Aligned_cols=30 Identities=3% Similarity=-0.178 Sum_probs=20.8
Q ss_pred cCCCcEEEECCCch-HHHHHHHc-CCcEEEEe
Q 001939 116 SIKADLVVSDVVPV-ACRAAADA-GIRSVCVT 145 (993)
Q Consensus 116 ~~kPDlVVsD~~~~-a~laA~~~-gIP~V~i~ 145 (993)
.+.||||+.++-.. ++.+.... ++|.++..
T Consensus 64 Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 46899999998543 33344454 89988864
No 280
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=35.10 E-value=5.8 Score=46.06 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=34.3
Q ss_pred CCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 401 PGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 401 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
..+.+..|...+|.+. .+..+. ..+.+..++|++ +||+|||..||+.
T Consensus 329 ~~sl~~~p~~~~~~~~----~~~~~~-~~gi~~~liRlsvGlE~~~dl~~dl~~ 377 (382)
T TIGR02080 329 VESLIAHPATMTHAAM----GPEARA-EAGISDTLLRLSVGLEDADDLIADLEQ 377 (382)
T ss_pred CcceeECCCccCcccC----CHHHHH-hcCCCcCeEEEEeccCCHHHHHHHHHH
Confidence 4445566777777755 444444 567788999999 8999999999865
No 281
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=34.30 E-value=6.4 Score=46.38 Aligned_cols=48 Identities=19% Similarity=0.088 Sum_probs=33.9
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
...+.+.-|...+|.+. .+..+. +.+-+.+++|++ |||+|||..||+.
T Consensus 371 g~~Slv~~p~~~th~~~----~~~~~~-~~Gi~~~liRlSvGlEd~eDLi~Dl~~ 420 (432)
T PRK06702 371 DARTCVIHPASTTHRQL----SAEDQR-LAGVTSDLIRLSVGIEDVSDIIADLEA 420 (432)
T ss_pred CCCcceECCCCCCcccC----CHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 34445555667777754 333333 466688899999 8999999999875
No 282
>PRK07503 methionine gamma-lyase; Provisional
Probab=34.06 E-value=7.6 Score=45.43 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=31.7
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 404 DVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 404 ~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
.+..|...+|.+. ++..+. +.+.+.+++|++ +||+|||..||+.
T Consensus 347 l~~~~~~~~h~~~----~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 392 (403)
T PRK07503 347 LAQHPASMTHSTY----TPEERA-EHGISEGLVRLSVGLEDVADILADLAQ 392 (403)
T ss_pred cCcCCCCCccccC----CHHHHH-hcCCCCCeEEEEEecCCHHHHHHHHHH
Confidence 4454555555543 444444 667788999999 8999999999876
No 283
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=33.82 E-value=5.3 Score=46.73 Aligned_cols=48 Identities=21% Similarity=0.093 Sum_probs=34.4
Q ss_pred CCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCCC
Q 001939 401 PGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQGL 453 (993)
Q Consensus 401 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 453 (993)
..+.+..|...+|++. .+..+. ..+.+++++|++ |||.|||..||+..
T Consensus 338 ~~sl~~~p~~~~h~~~----~~~~~~-~~gi~~~liR~svGlE~~~dli~dl~~a 387 (405)
T PRK08776 338 VESLIAHPASMTHAAM----TAEARA-AAGISDGLLRLSVGIESAEDLLIDLRAG 387 (405)
T ss_pred CceEEECCcccccccC----CHHHHH-hcCCCCCeEEEEeCcCCHHHHHHHHHHH
Confidence 3445566667777755 343333 566788999999 89999999999763
No 284
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=33.45 E-value=3e+02 Score=30.24 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHHHHCCCeEEEEeCC
Q 001939 29 HATRVVEVVRNLISAGHDVHVVTGA 53 (993)
Q Consensus 29 H~~ralaLA~aL~~~Gh~V~~v~~~ 53 (993)
|..=..+|+++|.+.| +|+++.+.
T Consensus 12 ~apGi~aL~~al~~~g-~V~VvAP~ 35 (266)
T PRK13934 12 HSPGLRLLYEFVSPLG-EVDVVAPE 35 (266)
T ss_pred CCHHHHHHHHHHHhCC-cEEEEccC
Confidence 3344668999998887 78888554
No 285
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=32.85 E-value=2e+02 Score=29.91 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=22.3
Q ss_pred cccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 001939 27 FGHATRVVEVVRNLISAGHDVHVVTGAP 54 (993)
Q Consensus 27 ~GH~~ralaLA~aL~~~Gh~V~~v~~~~ 54 (993)
.-++.++..+...+...|-.|.|++..+
T Consensus 39 ~~~L~~A~~~i~~i~~~~g~iLfV~t~~ 66 (193)
T cd01425 39 LEKLRLALNFIANIAAKGGKILFVGTKP 66 (193)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3466777778888888899999998775
No 286
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=32.50 E-value=8.2 Score=44.69 Aligned_cols=48 Identities=25% Similarity=0.120 Sum_probs=38.2
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
..++.++.|.-++|..+ .+..|+ +.+-...|+|++ |||.|||+.||+.
T Consensus 341 gveSLi~~pa~~th~~~----~~~~r~-~~Gi~~~LvRlSVGlEd~eDLi~Dl~~ 390 (396)
T COG0626 341 GVESLISHPATMTHASI----PLEERA-KAGITDGLVRLSVGLEDVEDLIADLEQ 390 (396)
T ss_pred CcccccccccccCcccC----CHhHHH-hcCCCCCeEEEEecCCCHHHHHHHHHH
Confidence 44557777777788766 555556 888899999999 8999999999865
No 287
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=31.88 E-value=2.9e+02 Score=28.44 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=24.4
Q ss_pred ecCCCCcccHHHHHHHHHHHHHCCCeEEEE
Q 001939 21 YVTGHGFGHATRVVEVVRNLISAGHDVHVV 50 (993)
Q Consensus 21 ~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v 50 (993)
+.+|.|-|=.+.++.+|-.-..+|.+|.++
T Consensus 26 VYtGdGKGKTTAAlGlalRAaG~G~rV~ii 55 (178)
T PRK07414 26 VFTSSQRNFFTSVMAQALRIAGQGTPVLIV 55 (178)
T ss_pred EEeCCCCCchHHHHHHHHHHhcCCCEEEEE
Confidence 347999999999998887777778888765
No 288
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=30.24 E-value=4 Score=47.37 Aligned_cols=47 Identities=21% Similarity=0.094 Sum_probs=30.6
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQ 451 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 451 (993)
...+.+..|...+|.+. +|..+. +.+.+++++|+| +||+|||..||+
T Consensus 334 g~~SLi~~p~~~~h~~~----~~e~~~-~~Gi~~~liRlSvGlEd~~dLi~Dl~ 382 (386)
T PF01053_consen 334 GVESLISHPASTSHRSL----SPEERA-EAGISDGLIRLSVGLEDPDDLIADLE 382 (386)
T ss_dssp SSS-EEEETTCTTTTTS----CHHHHH-HTTS-TTEEEEE--SS-HHHHHHHHH
T ss_pred CcccccccccchhhccC----Chhhhh-ccCCCCCeeEEEeccCCHHHHHHHHH
Confidence 34445555666666644 333333 567789999999 899999999985
No 289
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=29.84 E-value=1.6e+02 Score=34.10 Aligned_cols=82 Identities=17% Similarity=0.228 Sum_probs=55.2
Q ss_pred CCeEECCCCCC---HHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcE-EEEecCCCChh
Q 001939 262 PNFIKLPKDAY---TPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGG-VEMIRRDLLTG 337 (993)
Q Consensus 262 ~nv~~~~~~~~---~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g-~~l~~~~~~~~ 337 (993)
.++++.. .+| +-..+++||++|+ .=+-++.=|++.|+|++.+.+. +.+...+++.|.- ..++..+++.+
T Consensus 266 ~~i~~~~-d~~~~~~~~~l~~~dl~Vg-~R~HsaI~al~~g~p~i~i~Y~-----~K~~~l~~~~gl~~~~~~i~~~~~~ 338 (385)
T COG2327 266 AEILVSS-DEYAEELGGILAACDLIVG-MRLHSAIMALAFGVPAIAIAYD-----PKVRGLMQDLGLPGFAIDIDPLDAE 338 (385)
T ss_pred cceEeec-chHHHHHHHHhccCceEEe-ehhHHHHHHHhcCCCeEEEeec-----HHHHHHHHHcCCCcccccCCCCchH
Confidence 5666642 123 1146788999998 4455667799999999999843 3455666666663 44566677777
Q ss_pred hHHHHHHHHHhCC
Q 001939 338 HWKPYLERAISLK 350 (993)
Q Consensus 338 ~l~~~l~~ll~~~ 350 (993)
.+...+.+.+.+.
T Consensus 339 ~l~~~~~e~~~~~ 351 (385)
T COG2327 339 ILSAVVLERLTKL 351 (385)
T ss_pred HHHHHHHHHHhcc
Confidence 7877777766544
No 290
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=29.36 E-value=7.6 Score=45.00 Aligned_cols=47 Identities=21% Similarity=0.242 Sum_probs=32.9
Q ss_pred CCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 401 PGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 401 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
..+.+..|..++|.+. ++..+. +.+.+++++|++ |||.|||..||+.
T Consensus 330 ~~sl~~~p~~~~~~~~----~~~~~~-~~gi~~~liR~svGlE~~~dl~~dl~~ 378 (380)
T TIGR01325 330 AKSTITHPATTTHGRM----QPEERA-AAGIGDGLVRLSVGLEDVDDLIADLKR 378 (380)
T ss_pred CCeeeeCCCccCcccC----CHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHh
Confidence 3445555666666654 344433 566688999999 8999999999864
No 291
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=28.77 E-value=8 Score=44.92 Aligned_cols=48 Identities=19% Similarity=0.050 Sum_probs=34.9
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
...+.+..|...+|.+. .+..+. +.+.+++++|++ +||+|||..||+.
T Consensus 331 ~~~sl~~~~~~~~~~~~----~~~~~~-~~gi~~~liR~svGlE~~~dli~dl~~ 380 (385)
T PRK08574 331 GVESLATYPVKSAASPI----PEEDRK-ALGITEDLVRLSVGLEDVEDLIEDLDQ 380 (385)
T ss_pred CCcceeeCCCcCCcccC----CHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 34445666777777654 444444 567789999999 8999999999865
No 292
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=28.63 E-value=79 Score=30.40 Aligned_cols=35 Identities=31% Similarity=0.348 Sum_probs=26.7
Q ss_pred EEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 001939 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (993)
Q Consensus 17 ~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~ 53 (993)
+|++.++|. ++...+..+.+.|+++|++|.++.+.
T Consensus 2 ~i~l~vtGs--~~~~~~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 2 RILLGVTGS--IAAYKAPDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp EEEEEE-SS--GGGGGHHHHHHHHHTTTSEEEEEESH
T ss_pred EEEEEEECH--HHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 555567654 66677999999999999999877554
No 293
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=28.30 E-value=3.1e+02 Score=32.54 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=28.9
Q ss_pred ecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 001939 21 YVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (993)
Q Consensus 21 ~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~ 54 (993)
.-++.|.|=.+-+..|+++|+++|++|..+-..+
T Consensus 9 ~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gp 42 (451)
T PRK01077 9 AAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGP 42 (451)
T ss_pred EeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCC
Confidence 5577889999999999999999999998775543
No 294
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=27.09 E-value=86 Score=29.29 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=26.3
Q ss_pred HHHhhcCEEEe---c--CChhHHHH---HHHcCCcEEEEeCC
Q 001939 275 DFMAASDCMLG---K--IGYGTVSE---ALAYKLPFVFVRRD 308 (993)
Q Consensus 275 dlL~~adl~It---~--~G~~Tv~E---al~~GvP~l~ip~~ 308 (993)
+.|..||++|. . .+.||.+| |.+.|+|++++-..
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 56778999996 2 57899999 57789999999854
No 295
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=27.07 E-value=88 Score=30.32 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.5
Q ss_pred EEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 001939 19 AYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (993)
Q Consensus 19 l~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~ 54 (993)
+|+++|.|.|=.+-+..+++.|+++|.+|.++-+..
T Consensus 2 ~~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~ 37 (134)
T cd03109 2 MGFGTGTDIGKTVATAILARALKEKGYRVAPLKPVQ 37 (134)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 467889999999999999999999999999885443
No 296
>CHL00067 rps2 ribosomal protein S2
Probab=27.01 E-value=2.7e+02 Score=29.91 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=22.8
Q ss_pred CCcEEE-ECC--CchHHHHHHHcCCcEEEEec
Q 001939 118 KADLVV-SDV--VPVACRAAADAGIRSVCVTN 146 (993)
Q Consensus 118 kPDlVV-sD~--~~~a~laA~~~gIP~V~i~~ 146 (993)
.||+|| .|. ...+..-|..+|||+|++.|
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivD 192 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRKLGIPTISILD 192 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHHcCCCEEEEEe
Confidence 699988 455 45677788999999999844
No 297
>PRK06849 hypothetical protein; Provisional
Probab=26.82 E-value=2.2e+02 Score=32.98 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCC
Q 001939 32 RVVEVVRNLISAGHDVHVVTGAP 54 (993)
Q Consensus 32 ralaLA~aL~~~Gh~V~~v~~~~ 54 (993)
-++.+++.|.++||+|+++...+
T Consensus 16 ~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 16 AALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCc
Confidence 58999999999999999986654
No 298
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=26.31 E-value=2.9e+02 Score=30.22 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=23.2
Q ss_pred CCcEEE-ECC--CchHHHHHHHcCCcEEEEec
Q 001939 118 KADLVV-SDV--VPVACRAAADAGIRSVCVTN 146 (993)
Q Consensus 118 kPDlVV-sD~--~~~a~laA~~~gIP~V~i~~ 146 (993)
.||+|| .|. ...+..=|..+|||+|++.|
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivD 188 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAIVD 188 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEEee
Confidence 699998 454 55677788999999999844
No 299
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=25.55 E-value=1.4e+02 Score=34.01 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=27.1
Q ss_pred hHHHHHHHHhcCCCcEEEECCCc--------hHHH---HHHHcCCcEEEE
Q 001939 106 ILKDEVEWLNSIKADLVVSDVVP--------VACR---AAADAGIRSVCV 144 (993)
Q Consensus 106 ~l~~~~~~L~~~kPDlVVsD~~~--------~a~l---aA~~~gIP~V~i 144 (993)
.+....+++++.+||+||....| ++.+ +...++||+|+-
T Consensus 68 a~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 68 ALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 34555778899999999987532 2322 235689999975
No 300
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.49 E-value=1.7e+02 Score=32.73 Aligned_cols=58 Identities=14% Similarity=0.043 Sum_probs=42.0
Q ss_pred HHHhhcCEEEecCChhHHHHHHH----cCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 275 DFMAASDCMLGKIGYGTVSEALA----YKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 275 dlL~~adl~It~~G~~Tv~Eal~----~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
++...+|++|+-||-||+..++. .++|++.+... ..|...+ ++++++.++|+++++..
T Consensus 64 ~~~~~~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G---------------~lGFL~~---~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 64 ELGQYCDLVAVLGGDGTFLSVAREIAPRAVPIIGINQG---------------HLGFLTQ---IPREYMTDKLLPVLEGK 125 (296)
T ss_pred hcCcCCCEEEEECCcHHHHHHHHHhcccCCCEEEEecC---------------CCeEeec---cCHHHHHHHHHHHHcCC
Confidence 33346999999999999998874 47899999832 1354443 44577888888887553
No 301
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=24.13 E-value=11 Score=44.00 Aligned_cols=48 Identities=21% Similarity=0.151 Sum_probs=33.8
Q ss_pred cCCCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 400 VPGRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 400 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
.+.+.+..|.-.+|... ++..+. ..+.++.++|+| +||+|||..||+.
T Consensus 351 ~~~sl~~~p~~~~h~~~----~~~~~~-~~gi~~~lvR~svGlE~~~dli~dl~~ 400 (403)
T PRK07810 351 DAKSLITHPATTTHRAM----GPEGRA-AIGLGDGVVRLSVGLEDTDDLIADLDR 400 (403)
T ss_pred CCcceeeCCCccccccC----CHHHHH-hcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 44555666666666654 333333 566688999999 8999999999864
No 302
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=24.07 E-value=6.5e+02 Score=25.73 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=26.3
Q ss_pred ecCCCCcccHHHHHHHHHHHHHCCCeEEEE
Q 001939 21 YVTGHGFGHATRVVEVVRNLISAGHDVHVV 50 (993)
Q Consensus 21 ~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v 50 (993)
+.+|.|.|-.+.++.+|-....+|+.|.++
T Consensus 10 v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 10 VHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred EECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 347899999999999999999999999654
No 303
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=23.79 E-value=1.1e+02 Score=35.63 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=31.4
Q ss_pred EEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCc
Q 001939 18 FAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDF 56 (993)
Q Consensus 18 Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~ 56 (993)
|++.-+..|.|-++-++.|.++|+++|++|.-+-..|.+
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDY 41 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDY 41 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCc
Confidence 334678889999999999999999999999765444433
No 304
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=22.56 E-value=5.5e+02 Score=34.28 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCC
Q 001939 31 TRVVEVVRNLISAGHDVHVVTGAP 54 (993)
Q Consensus 31 ~ralaLA~aL~~~Gh~V~~v~~~~ 54 (993)
.-|+.++++|++.|++|+++...|
T Consensus 576 y~~v~~~~aLk~~G~~vI~vn~np 599 (1068)
T PRK12815 576 YSSVHAAFALKKEGYETIMINNNP 599 (1068)
T ss_pred hhHHHHHHHHHHcCCEEEEEeCCc
Confidence 467888999999999999987765
No 305
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=22.35 E-value=4.3e+02 Score=29.63 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=26.5
Q ss_pred cCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 001939 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~ 54 (993)
.-.+|.|--+-.-+|.+.|+++||+|-|+.-.|
T Consensus 57 TG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDP 89 (323)
T COG1703 57 TGVPGAGKSTLIEALGRELRERGHRVAVLAVDP 89 (323)
T ss_pred cCCCCCchHHHHHHHHHHHHHCCcEEEEEEECC
Confidence 344568888888899999999999998775554
No 306
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=22.35 E-value=87 Score=34.85 Aligned_cols=58 Identities=19% Similarity=0.089 Sum_probs=39.3
Q ss_pred HhhcCEEEecCChhHHHHHHH----cCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHH
Q 001939 277 MAASDCMLGKIGYGTVSEALA----YKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (993)
Q Consensus 277 L~~adl~It~~G~~Tv~Eal~----~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll 347 (993)
|..||++|+.||-||..=|.. -.+|+|++.-++.+-+ |..+-...++ +....+|.++.
T Consensus 103 i~waD~VisvGGDGTfL~Aasrv~~~~~PViGvNtDP~~Se------------g~lcL~~~~~-~n~~~al~k~~ 164 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAASRVIDDSKPVIGVNTDPTGSE------------GHLCLPDKYP-SNPAGALCKLT 164 (395)
T ss_pred CchhhEEEEecCccceeehhhhhhccCCceeeecCCCCcCc------------ceEeccccCC-CCcHHHHHHHH
Confidence 778999999999999876655 5799999985432211 4344444443 55666666664
No 307
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.89 E-value=1.4e+02 Score=34.33 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=31.9
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~ 54 (993)
-+|+ ++--.|.|-.+-|--+|..++++|+.+.++|.+.
T Consensus 102 sVim-fVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDT 139 (483)
T KOG0780|consen 102 SVIM-FVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADT 139 (483)
T ss_pred cEEE-EEeccCCCcceeHHHHHHHHHhcCCceeEEeecc
Confidence 3443 4566788999999999999999999999998764
No 308
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=21.53 E-value=1.4e+02 Score=31.29 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=27.7
Q ss_pred EEEEEecCCCCcccHHH-HHHHHHHHHHCCCeEEEEeCC
Q 001939 16 LVFAYYVTGHGFGHATR-VVEVVRNLISAGHDVHVVTGA 53 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~r-alaLA~aL~~~Gh~V~~v~~~ 53 (993)
.+|++.++| ...+.. +..+++.|+++||+|.++.+.
T Consensus 6 k~IllgVTG--siaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 6 KRIGFGLTG--SHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CEEEEEEcC--HHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 456556654 467787 699999999999999877554
No 309
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=21.51 E-value=87 Score=32.98 Aligned_cols=32 Identities=19% Similarity=0.088 Sum_probs=28.0
Q ss_pred ecCCCCcccHHHHHHHHHHHHHCCCeEEEEeC
Q 001939 21 YVTGHGFGHATRVVEVVRNLISAGHDVHVVTG 52 (993)
Q Consensus 21 ~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~ 52 (993)
+..-+|.|-.+++..||++|++++|+|..++.
T Consensus 6 lTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 6 LTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred EecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 45667899999999999999999999987754
No 310
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=20.64 E-value=23 Score=41.25 Aligned_cols=43 Identities=26% Similarity=0.197 Sum_probs=29.9
Q ss_pred CCccccccccccccccccccCCCCCCCCCCCCCccccc--cccceeccCCCCC
Q 001939 402 GRDVSIPEWYQTAEDELGLSASRSPPCTPEGDSTVKLS--TEDFEILHGDCQG 452 (993)
Q Consensus 402 ~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 452 (993)
.+.+..|...+|.+. .+. +.+.++.++|+| +||+|||..||+.
T Consensus 340 ~sl~~~~~~~~~~~~----~~~----~~gi~~~liR~svGlE~~~dl~~dl~~ 384 (388)
T PRK07811 340 ESLIEHPSAMTHAST----AGS----QLEVPDDLVRLSVGIEDVADLLADLEQ 384 (388)
T ss_pred cceEeCCcccCcccC----CHh----hcCCCCCEEEEEeCCCCHHHHHHHHHH
Confidence 334555555555544 211 457789999999 8999999999864
No 311
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=20.55 E-value=7.2e+02 Score=25.80 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=28.4
Q ss_pred EecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 001939 20 YYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (993)
Q Consensus 20 ~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~ 54 (993)
.++-..|.|=.+-+.-||..+..+|..|.++|...
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~ 39 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLKGKKVALISADT 39 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEST
T ss_pred EEECCCCCchHhHHHHHHHHHhhccccceeecCCC
Confidence 34667889999999999999999999999998764
No 312
>PRK05905 hypothetical protein; Provisional
Probab=20.23 E-value=79 Score=34.56 Aligned_cols=32 Identities=13% Similarity=0.041 Sum_probs=24.6
Q ss_pred CCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEc
Q 001939 894 GSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIG 939 (993)
Q Consensus 894 s~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~ 939 (993)
-+|++.++.+..++ .|+ .++|||+| .|+..+.
T Consensus 222 ~~P~i~~~~~~l~~-----------~g~-~a~MSGSG--stvF~l~ 253 (258)
T PRK05905 222 LYPNLLYKYNELLN-----------DGF-YTILSGAG--SSFIVIK 253 (258)
T ss_pred hChHHHHHHHHHHh-----------CCC-CEEEeCcc--hhheEEe
Confidence 47888888776655 465 89999998 8887765
No 313
>PRK05920 aromatic acid decarboxylase; Validated
Probab=20.18 E-value=1.5e+02 Score=31.19 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=27.4
Q ss_pred EEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 001939 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (993)
Q Consensus 17 ~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~ 54 (993)
+|++.++| .....-+..+.+.|.+.|++|.++.+..
T Consensus 5 rIllgITG--siaa~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 5 RIVLAITG--ASGAIYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred EEEEEEeC--HHHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 34446664 4667899999999999999998876543
No 314
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=20.17 E-value=1.1e+02 Score=32.55 Aligned_cols=112 Identities=17% Similarity=0.098 Sum_probs=61.4
Q ss_pred ecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCccc---ccccCCCceEEeeeeccCCccccCccccChHHHHHHHHH
Q 001939 21 YVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVF---TSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSE 97 (993)
Q Consensus 21 ~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~---~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 97 (993)
+-..--.-|+.+|+.++..+..+|-.+.|++..+.+.. ....+..+..+ ...|.-|... ... .+..
T Consensus 85 IdLdqT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~gy~~-~~~w~~G~lT-----N~~-----~l~g 153 (251)
T KOG0832|consen 85 IDLDQTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAGGYSH-NRKWLGGLLT-----NAR-----ELFG 153 (251)
T ss_pred EecHHHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhcCcee-eeeeccceee-----cch-----hhcc
Confidence 33344467899999999999999999999987653221 11111111111 1112223220 000 0000
Q ss_pred HhhccHHHhHHHHHHHHhcCCCcEEEE-CC--CchHHHHHHHcCCcEEEE
Q 001939 98 TAVAPRKSILKDEVEWLNSIKADLVVS-DV--VPVACRAAADAGIRSVCV 144 (993)
Q Consensus 98 ~~~~~~~~~l~~~~~~L~~~kPDlVVs-D~--~~~a~laA~~~gIP~V~i 144 (993)
.+..... -..++.-++....||+||. +. ...+++-|..++||.|.+
T Consensus 154 ~~~~~~~-~~pd~~~f~~t~~~D~vvvln~~e~~sAilEA~K~~IPTIgI 202 (251)
T KOG0832|consen 154 ALVRKFL-SLPDALCFLPTLTPDLVVVLNPEENHSAILEAAKMAIPTIGI 202 (251)
T ss_pred ccccccc-CCCcceeecccCCcceeEecCcccccHHHHHHHHhCCCeEEE
Confidence 0000000 0123344566778899995 43 557888899999999998
Done!