Query 001939
Match_columns 993
No_of_seqs 507 out of 3368
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 05:29:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 3.9E-64 1.3E-68 587.9 32.6 429 480-977 23-518 (520)
2 2a2c_A N-acetylgalactosamine k 100.0 3.1E-53 1E-57 499.5 37.7 417 480-977 39-475 (478)
3 1pie_A Galactokinase; galactos 100.0 2E-51 6.9E-56 477.8 34.7 381 481-977 32-416 (419)
4 1wuu_A Galactokinase; galactos 100.0 2.5E-49 8.6E-54 457.5 29.5 375 480-977 20-397 (399)
5 2cz9_A Probable galactokinase; 100.0 3.2E-47 1.1E-51 432.7 29.2 347 497-975 1-349 (350)
6 3k85_A D-glycero-D-manno-hepto 100.0 2.8E-46 9.7E-51 424.4 19.2 322 497-976 3-338 (357)
7 1kvk_A MK, mevalonate kinase; 100.0 2.6E-42 9E-47 398.4 25.4 343 496-976 4-379 (395)
8 3k17_A LIN0012 protein; protei 100.0 2E-41 6.9E-46 385.1 27.0 304 496-964 5-346 (365)
9 3gon_A Phosphomevalonate kinas 100.0 2.6E-41 9E-46 381.4 21.6 296 497-964 1-323 (335)
10 2pg9_A Phosphomevalonate kinas 100.0 8.3E-40 2.9E-44 368.5 24.9 295 497-965 3-326 (337)
11 4hac_A Mevalonate kinase; GHMP 100.0 5.1E-36 1.8E-40 335.5 30.7 305 489-975 13-319 (321)
12 2x7i_A Mevalonate kinase; tran 100.0 6.7E-37 2.3E-41 341.5 23.1 292 496-956 5-297 (308)
13 2hfs_A Mevalonate kinase, puta 100.0 4.4E-36 1.5E-40 338.5 26.7 302 495-957 11-314 (332)
14 1kkh_A Mevalonate kinase; mixe 100.0 3.8E-34 1.3E-38 320.5 24.8 282 496-942 4-294 (317)
15 2oi2_A Mevalonate kinase; enzy 100.0 5.9E-34 2E-38 315.1 23.6 282 497-961 5-288 (292)
16 1h72_C HK, homoserine kinase; 100.0 5.7E-29 1.9E-33 275.8 23.3 277 498-957 3-282 (296)
17 3s2u_A UDP-N-acetylglucosamine 100.0 5.8E-27 2E-31 267.4 26.6 316 24-373 9-357 (365)
18 4amg_A Snogd; transferase, pol 99.9 3.2E-26 1.1E-30 263.6 24.2 335 13-370 20-398 (400)
19 2iya_A OLEI, oleandomycin glyc 99.9 8.9E-25 3.1E-29 254.1 29.7 347 10-371 7-420 (424)
20 3rsc_A CALG2; TDP, enediyne, s 99.9 5.1E-25 1.7E-29 255.1 25.9 345 10-371 17-412 (415)
21 3ia7_A CALG4; glycosysltransfe 99.9 1.8E-24 6E-29 248.9 27.6 343 16-372 5-398 (402)
22 1iir_A Glycosyltransferase GTF 99.9 6.6E-24 2.3E-28 246.3 28.1 344 16-387 1-407 (415)
23 4fzr_A SSFS6; structural genom 99.9 2.2E-24 7.4E-29 248.7 23.7 319 13-351 13-370 (398)
24 3h4t_A Glycosyltransferase GTF 99.9 7.7E-24 2.6E-28 244.9 25.7 338 16-374 1-384 (404)
25 2yjn_A ERYCIII, glycosyltransf 99.9 4E-24 1.4E-28 250.2 23.0 346 14-372 19-435 (441)
26 1rrv_A Glycosyltransferase GTF 99.9 2.6E-23 9E-28 241.2 28.1 342 16-387 1-408 (416)
27 2gs8_A Mevalonate pyrophosphat 99.9 7.2E-24 2.5E-28 237.0 18.9 300 496-976 7-317 (317)
28 3oti_A CALG3; calicheamicin, T 99.9 1.4E-23 4.9E-28 241.8 20.8 327 16-371 21-396 (398)
29 2v8p_A 4-diphosphocytidyl-2-C- 99.9 1.1E-23 3.9E-28 230.0 16.6 167 496-738 3-174 (271)
30 3tsa_A SPNG, NDP-rhamnosyltran 99.9 4E-23 1.4E-27 237.2 21.4 339 15-371 1-387 (391)
31 2p6p_A Glycosyl transferase; X 99.9 8.1E-23 2.8E-27 234.2 21.4 334 16-371 1-378 (384)
32 2iyf_A OLED, oleandomycin glyc 99.9 2.2E-22 7.7E-27 234.1 25.2 344 13-371 5-398 (430)
33 3otg_A CALG1; calicheamicin, T 99.9 1E-22 3.6E-27 235.2 20.6 343 14-372 19-408 (412)
34 3pyf_A 4-diphosphocytidyl-2-C- 99.9 3.3E-22 1.1E-26 221.6 20.4 289 497-977 5-300 (306)
35 3qt5_A Mevalonate diphosphate 99.9 3.5E-22 1.2E-26 223.8 19.6 303 498-975 10-329 (332)
36 2vch_A Hydroquinone glucosyltr 99.9 4.3E-21 1.5E-25 226.5 29.9 320 16-349 7-429 (480)
37 3hbf_A Flavonoid 3-O-glucosylt 99.9 3.1E-21 1.1E-25 224.6 28.1 326 15-350 13-415 (454)
38 2c1x_A UDP-glucose flavonoid 3 99.9 2.1E-21 7.1E-26 227.7 25.7 326 15-350 7-413 (456)
39 2pq6_A UDP-glucuronosyl/UDP-gl 99.9 2.8E-21 9.6E-26 228.5 26.6 330 13-350 6-440 (482)
40 2acv_A Triterpene UDP-glucosyl 99.9 1.2E-20 4.2E-25 221.7 27.2 321 14-348 8-424 (463)
41 2ww4_A 4-diphosphocytidyl-2C-m 99.9 6.6E-22 2.3E-26 217.1 12.8 167 499-738 4-181 (283)
42 1uek_A 4-(cytidine 5'-diphosph 99.9 1.9E-21 6.3E-26 213.0 15.0 159 498-738 2-165 (275)
43 3hul_A HSK, HK, homoserine kin 99.8 1.6E-19 5.3E-24 199.5 25.7 283 497-977 2-289 (298)
44 1f0k_A MURG, UDP-N-acetylgluco 99.8 1.3E-18 4.4E-23 197.2 24.0 320 16-372 7-355 (364)
45 3hbm_A UDP-sugar hydrolase; PS 99.8 4.9E-18 1.7E-22 185.2 22.8 246 17-331 2-274 (282)
46 1fi4_A Mevalonate 5-diphosphat 99.7 7.2E-17 2.5E-21 186.1 24.0 227 610-957 92-348 (416)
47 2o6l_A UDP-glucuronosyltransfe 99.7 3.3E-16 1.1E-20 158.1 15.6 140 208-350 6-155 (170)
48 3lto_A Mevalonate diphosphate 99.5 1.4E-12 4.9E-17 143.9 21.0 216 615-956 78-308 (323)
49 2jzc_A UDP-N-acetylglucosamine 99.4 3.6E-13 1.2E-17 141.1 12.6 149 217-370 22-221 (224)
50 2hke_A Diphosphomevalonate dec 99.4 6.5E-12 2.2E-16 143.2 21.0 80 610-702 75-155 (380)
51 3c48_A Predicted glycosyltrans 99.3 9E-11 3.1E-15 136.0 22.1 131 212-351 232-393 (438)
52 3fro_A GLGA glycogen synthase; 99.2 4E-10 1.4E-14 130.0 23.7 131 210-351 239-398 (439)
53 3okp_A GDP-mannose-dependent a 99.2 9.7E-11 3.3E-15 133.3 18.0 295 13-350 2-345 (394)
54 2jjm_A Glycosyl transferase, g 99.2 7.2E-10 2.5E-14 126.6 25.1 289 26-350 26-351 (394)
55 3f0n_A Mevalonate pyrophosphat 99.2 6.3E-11 2.2E-15 133.3 15.5 207 630-958 122-346 (414)
56 2iw1_A Lipopolysaccharide core 99.2 1.1E-09 3.8E-14 123.6 23.9 132 210-350 183-338 (374)
57 3dzc_A UDP-N-acetylglucosamine 99.2 2.2E-10 7.4E-15 131.7 18.1 148 211-368 217-395 (396)
58 3ot5_A UDP-N-acetylglucosamine 99.2 3.6E-10 1.2E-14 130.2 19.7 148 212-372 216-393 (403)
59 2x6q_A Trehalose-synthase TRET 99.2 9.1E-10 3.1E-14 126.8 21.6 299 12-350 37-380 (416)
60 1vgv_A UDP-N-acetylglucosamine 99.2 5.7E-10 2E-14 126.8 18.9 151 212-372 193-374 (384)
61 2r60_A Glycosyl transferase, g 99.1 2.2E-09 7.5E-14 126.9 21.1 131 211-350 245-425 (499)
62 1v4v_A UDP-N-acetylglucosamine 99.0 1.3E-09 4.3E-14 123.7 15.1 141 222-372 197-366 (376)
63 2iuy_A Avigt4, glycosyltransfe 99.0 5.6E-10 1.9E-14 125.0 9.7 260 13-348 1-307 (342)
64 2gek_A Phosphatidylinositol ma 99.0 1.2E-08 4E-13 116.6 19.5 291 15-350 20-350 (406)
65 3beo_A UDP-N-acetylglucosamine 98.8 2.7E-07 9.1E-12 104.2 23.4 147 211-370 196-372 (375)
66 1rzu_A Glycogen synthase 1; gl 98.8 6E-08 2.1E-12 113.9 17.1 130 210-347 277-438 (485)
67 4hwg_A UDP-N-acetylglucosamine 98.8 5.4E-08 1.8E-12 111.1 15.7 243 106-371 82-374 (385)
68 2qzs_A Glycogen synthase; glyc 98.6 2.5E-07 8.4E-12 108.7 16.4 130 210-347 277-439 (485)
69 3oy2_A Glycosyltransferase B73 98.5 7.7E-07 2.6E-11 102.0 16.1 131 212-351 171-357 (413)
70 2hy7_A Glucuronosyltransferase 98.5 1.2E-05 4E-10 92.4 25.2 133 223-369 221-372 (406)
71 2vsy_A XCC0866; transferase, g 98.4 6.7E-07 2.3E-11 107.2 12.5 132 213-350 367-523 (568)
72 2x0d_A WSAF; GT4 family, trans 98.4 2E-06 6.8E-11 99.1 13.5 95 247-350 276-380 (413)
73 3s28_A Sucrose synthase 1; gly 98.3 2.5E-05 8.7E-10 96.6 22.6 176 215-401 562-797 (816)
74 2xci_A KDO-transferase, 3-deox 98.3 4.5E-05 1.5E-09 86.5 21.6 82 262-349 260-346 (374)
75 2f9f_A First mannosyl transfer 98.0 2.4E-05 8.2E-10 78.6 11.2 122 219-351 19-164 (177)
76 3vue_A GBSS-I, granule-bound s 97.9 0.0012 4.1E-08 78.4 25.1 131 211-348 313-476 (536)
77 2bfw_A GLGA glycogen synthase; 97.8 3.3E-05 1.1E-09 78.7 8.4 129 210-350 24-182 (200)
78 3tov_A Glycosyl transferase fa 97.1 0.023 7.8E-07 63.5 20.0 247 16-306 9-287 (349)
79 3qhp_A Type 1 capsular polysac 97.1 0.00087 3E-08 65.8 7.5 117 224-350 2-141 (166)
80 1psw_A ADP-heptose LPS heptosy 96.9 0.019 6.6E-07 63.6 17.5 254 17-306 2-287 (348)
81 3rhz_A GTF3, nucleotide sugar 96.2 0.012 3.9E-07 65.6 9.6 111 223-346 177-301 (339)
82 3q3e_A HMW1C-like glycosyltran 87.3 0.51 1.8E-05 56.0 5.6 86 260-350 497-589 (631)
83 2wqk_A 5'-nucleotidase SURE; S 86.1 3 0.0001 43.8 10.1 36 13-53 1-36 (251)
84 3nb0_A Glycogen [starch] synth 85.9 0.68 2.3E-05 55.4 5.6 70 272-347 511-592 (725)
85 1uqt_A Alpha, alpha-trehalose- 85.3 0.99 3.4E-05 52.4 6.6 77 263-350 332-420 (482)
86 4gyw_A UDP-N-acetylglucosamine 84.4 1.8 6E-05 53.0 8.6 113 214-329 514-651 (723)
87 3t5t_A Putative glycosyltransf 80.7 2 6.9E-05 49.8 6.7 78 263-350 353-439 (496)
88 2gt1_A Lipopolysaccharide hept 80.2 3.9 0.00013 44.3 8.6 120 222-349 177-322 (326)
89 3l7i_A Teichoic acid biosynthe 79.8 6.4 0.00022 48.0 11.2 154 211-373 526-720 (729)
90 2phj_A 5'-nucleotidase SURE; S 69.8 20 0.00069 37.4 10.1 35 16-53 2-36 (251)
91 3ty2_A 5'-nucleotidase SURE; s 67.6 16 0.00054 38.3 8.8 38 13-53 9-46 (261)
92 3ug7_A Arsenical pump-driving 65.4 24 0.00082 38.7 10.4 38 18-55 28-65 (349)
93 3zq6_A Putative arsenical pump 59.5 34 0.0012 37.0 10.1 37 18-54 16-52 (324)
94 2v4n_A Multifunctional protein 53.0 57 0.002 34.0 10.0 35 16-53 2-36 (254)
95 3sbx_A Putative uncharacterize 52.3 21 0.00073 35.5 6.3 50 276-325 105-165 (189)
96 3igf_A ALL4481 protein; two-do 49.8 43 0.0015 37.1 9.0 38 17-55 3-40 (374)
97 1ydh_A AT5G11950; structural g 49.1 18 0.00061 36.9 5.2 55 271-325 93-162 (216)
98 3iqw_A Tail-anchored protein t 48.7 42 0.0014 36.6 8.6 39 16-54 16-54 (334)
99 3qua_A Putative uncharacterize 43.3 26 0.0009 35.2 5.3 38 276-313 114-161 (199)
100 2vqe_B 30S ribosomal protein S 41.9 1.3E+02 0.0046 31.2 10.6 30 117-146 157-189 (256)
101 1j9j_A Stationary phase surviV 38.0 67 0.0023 33.4 7.6 30 22-53 6-35 (247)
102 1l5x_A SurviVal protein E; str 37.1 1.1E+02 0.0038 32.3 9.2 30 22-53 6-35 (280)
103 1t35_A Hypothetical protein YV 36.5 46 0.0016 33.1 5.9 54 271-324 85-153 (191)
104 4ds3_A Phosphoribosylglycinami 35.9 66 0.0022 32.5 7.0 40 11-54 3-45 (209)
105 2e6c_A 5'-nucleotidase SURE; S 34.7 1.3E+02 0.0046 31.0 9.2 30 22-53 6-35 (244)
106 3io3_A DEHA2D07832P; chaperone 34.5 85 0.0029 34.3 8.2 39 16-54 18-58 (348)
107 2khz_A C-MYC-responsive protei 33.9 44 0.0015 32.3 5.2 69 275-348 73-150 (165)
108 3auf_A Glycinamide ribonucleot 32.7 98 0.0033 31.7 7.8 35 16-54 23-60 (229)
109 1jx7_A Hypothetical protein YC 32.1 49 0.0017 29.4 4.9 40 13-52 1-42 (117)
110 2hy5_A Putative sulfurtransfer 32.0 55 0.0019 30.1 5.3 35 17-51 2-39 (130)
111 3mc3_A DSRE/DSRF-like family p 32.0 46 0.0016 30.9 4.7 42 11-52 13-54 (134)
112 4gi5_A Quinone reductase; prot 31.2 50 0.0017 35.0 5.4 43 10-52 17-61 (280)
113 2ywr_A Phosphoribosylglycinami 29.8 94 0.0032 31.4 7.0 35 16-54 2-39 (216)
114 2d1p_B TUSC, hypothetical UPF0 29.7 67 0.0023 29.1 5.3 38 13-50 1-38 (119)
115 1s2d_A Purine trans deoxyribos 29.5 51 0.0017 32.1 4.7 32 275-306 77-116 (167)
116 4fyk_A Deoxyribonucleoside 5'- 29.2 92 0.0031 29.8 6.3 69 275-348 64-141 (152)
117 3qjg_A Epidermin biosynthesis 29.1 42 0.0014 32.9 4.1 37 16-54 6-42 (175)
118 2iz6_A Molybdenum cofactor car 28.3 87 0.003 30.7 6.2 31 277-307 105-139 (176)
119 2i2c_A Probable inorganic poly 28.1 52 0.0018 34.6 4.9 54 279-350 35-94 (272)
120 2a33_A Hypothetical protein; s 28.0 65 0.0022 32.7 5.4 43 271-313 97-153 (215)
121 3lqk_A Dipicolinate synthase s 26.6 65 0.0022 32.3 5.0 39 14-54 6-45 (201)
122 2hy5_B Intracellular sulfur ox 26.5 68 0.0023 29.9 4.9 40 12-51 4-43 (136)
123 3ehd_A Uncharacterized conserv 24.2 73 0.0025 30.8 4.7 33 275-307 65-105 (162)
124 3av3_A Phosphoribosylglycinami 23.9 83 0.0028 31.8 5.3 35 13-53 3-40 (212)
125 3pdi_B Nitrogenase MOFE cofact 23.1 2.3E+02 0.0077 32.2 9.4 32 111-144 368-399 (458)
126 2f62_A Nucleoside 2-deoxyribos 22.7 72 0.0024 30.8 4.3 33 275-307 63-106 (161)
127 2r8r_A Sensor protein; KDPD, P 22.6 1.2E+02 0.0043 30.9 6.3 39 15-54 6-44 (228)
128 1rcu_A Conserved hypothetical 22.6 45 0.0016 33.3 2.9 40 272-311 107-154 (195)
129 2lpm_A Two-component response 22.4 59 0.002 29.7 3.5 39 108-146 43-87 (123)
130 3tqr_A Phosphoribosylglycinami 21.3 2.5E+02 0.0085 28.3 8.2 17 110-126 75-91 (215)
131 1f8y_A Nucleoside 2-deoxyribos 20.7 83 0.0028 30.2 4.3 33 275-307 74-114 (157)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=3.9e-64 Score=587.91 Aligned_cols=429 Identities=19% Similarity=0.287 Sum_probs=306.9
Q ss_pred HHHHHHHHhcCCCCCCceEEEEcCcccccccccccccCCeeeccccccceEEEEEec--CcchhhhhhhhhhccCCCCCC
Q 001939 480 QMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKI--SPSKQRLWKHALARHNDKGQG 557 (993)
Q Consensus 480 ~~~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~--~~~~~~l~~~~~~~~~~~~~~ 557 (993)
+..-...|.+.||.+ |.++++||||||||||||||+||+||||||+++++++++++ +|++
T Consensus 23 ~~~l~~~F~~~fg~~-p~~v~~APGRVnLiGEHtDyngG~VLp~AI~~~~~vav~~~~~~d~~----------------- 84 (520)
T 3v2u_C 23 HLAVVDAFFQTYHVK-PDFIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPS----------------- 84 (520)
T ss_dssp HHHHHHHHHHHHSSC-CSEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECCCSSCE-----------------
T ss_pred HHHHHHHHHHHhCCC-CCEEEEcceeEEEeccCeeeCCCEEEEEEeecceEEEEEeccCCCCE-----------------
Confidence 444566788999965 56789999999999999999999999999999999999998 5554
Q ss_pred CCCeEEEEecccccCCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHH---HHHHh------CCCC
Q 001939 558 PMPVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILV---LMTEL------GVRF 628 (993)
Q Consensus 558 ~~~~i~i~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~---~~~~~------g~~~ 628 (993)
++|.|.+..+. ...|++++++. ++.+ ......|.||+++++.. ++++. |...
T Consensus 85 ----i~i~S~~~~~~--~~~~~l~~~~~-----~~~i--------~~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~~ 145 (520)
T 3v2u_C 85 ----ITLTNADPKFA--QRKFDLPLDGS-----YMAI--------DPSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPL 145 (520)
T ss_dssp ----EEEEESSTTSC--CEEEECCTTCC-----CCCC--------CTTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSCC
T ss_pred ----EEEEECCCCCC--ceEEEeccCcc-----cccc--------CcccccHHHHHHHHHHHHHHHHHhhcccccccCCC
Confidence 44444421111 01233322210 0111 01236899999997643 34332 3344
Q ss_pred CCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceE
Q 001939 629 EDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAH---GLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKL 705 (993)
Q Consensus 629 ~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~---g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~ 705 (993)
.||+++|.|+||.|+|| |||++||++.|++.++ +.++++.+++++|+.+|+ ++|.|||+|||+++++|+.+++
T Consensus 146 -~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~-~vG~~~G~mDQ~as~~G~~g~~ 221 (520)
T 3v2u_C 146 -VGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEH-YVGVNNGGMDQATSVYGEEDHA 221 (520)
T ss_dssp -CCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGG-GGTCCCCSHHHHHHHHCBTTBE
T ss_pred -CceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH-HhCCCCchhhHHHHHhCCCCeE
Confidence 79999999999999999 9999999999999998 778999999999999997 9999999999999999999999
Q ss_pred EEEeecC-ccceeeecCCC----CeEEEEEeCCC---ccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCC-CC
Q 001939 706 LAMVCQP-AELLGVVEIPS----HIRFWGIDSGI---RHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNG-LN 776 (993)
Q Consensus 706 ~~i~~~~-~~~~~~v~~p~----~~~~ll~dSgv---~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~-~~ 776 (993)
+++||++ +++ +++++|+ ++.|+|+||++ +|.+++++||.||.+|..+.+++. +.++.... ..
T Consensus 222 l~id~~~~l~~-~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~--------~~~g~~~~~~~ 292 (520)
T 3v2u_C 222 LYVEFRPKLKA-TPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALA--------TRYSVALPSHK 292 (520)
T ss_dssp EEEECSSSCEE-EEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHH--------HHTTBCCCCCC
T ss_pred EEEEcCCCcee-EEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHH--------HhhCCcccccc
Confidence 9999998 775 7889886 89999999999 889999999999999965444442 22111000 00
Q ss_pred CC-CccchhhHHHH--------------------HhhhhhHhhcCChHHHHHH--------HhhcCCccchhhhhhhhcC
Q 001939 777 NI-EPEVDGVELLE--------------------AEASLDYLCNLSPHRFEAL--------YAKNIPESIVGEEFSKNYG 827 (993)
Q Consensus 777 ~~-~~~~~~~~~l~--------------------~~~~~~~L~~~~~~~~~~~--------~~~~lp~~i~~~~~~~~~~ 827 (993)
.+ ......++.+. ....++.+.++..+.|... +...+. ++.++|.+.|.
T Consensus 293 ~~~~~~~~sLRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~--~~~~~l~~~~l 370 (520)
T 3v2u_C 293 DNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALN--CSREEFTRDYL 370 (520)
T ss_dssp SCSSCTTCCHHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTT--SCHHHHHHHHT
T ss_pred cccccccccHHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhhc--CChhhhhhhhc
Confidence 00 00000111110 0001111211111111100 000110 22334444444
Q ss_pred CCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccC--C-hhHHHHHHHHHHHhhhhhhhc-CCCCchHHHHHH
Q 001939 828 DHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAA--S-DDQLTSLGELLYQCHYSYSAC-GLGSDGTDRLVQ 903 (993)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~--~-~~~l~~lG~Lm~~sH~slr~~-~vs~~~lD~lv~ 903 (993)
+.. ++ ..+.|.+++|++|+++||.||.+++++|++++ + .+|++.||+||++||.|||++ |||||+||.|++
T Consensus 371 ~~~-~~----~~~~~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~ 445 (520)
T 3v2u_C 371 TTF-PV----RFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICS 445 (520)
T ss_dssp SSS-CE----EESCBCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHH
T ss_pred ccc-cc----ccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 321 21 12346789999999999999999999999852 1 237999999999999999995 999999999999
Q ss_pred HHHHHhhhccccCCCCcccceeeeccccCceEEEEc---cCCcccHHHHHHHHHHHHhhcCC-------CCcEEee-cCC
Q 001939 904 LVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIG---RNSLRSSEQVLEIQQRYKDATGY-------LPLIIEG-SSP 972 (993)
Q Consensus 904 ~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~---~~~~~~~~~~~~i~~~y~~~~g~-------~~~~~~~-~~~ 972 (993)
+|++ .|++||||||||||||+++|. +.+. .++++++|.++|+++... .+.+|++ +++
T Consensus 446 ~a~~-----------~Ga~GarlTGaG~GGc~iaLv~~~~~~~-~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~ 513 (520)
T 3v2u_C 446 IALA-----------NGSFGSRLTGAGWGGCTIHLVPSGANGN-VEQVRKALIEKFYNVRYPDLTDEELKDAIIVSKPAL 513 (520)
T ss_dssp HHHH-----------TTCSEEEECSSCSSSEEEEEEEESTTCS-HHHHHHHHHHHTHHHHCTTCCHHHHHHHEEECCCCC
T ss_pred HHHh-----------CCCCEEEEecCCCCceEEEEEcCCCHHH-HHHHHHHHHHHHHhccCCccccccCCCeEEEecCCC
Confidence 9987 699999999999999999776 4333 468999999999977643 4788886 677
Q ss_pred CCcce
Q 001939 973 GAGKF 977 (993)
Q Consensus 973 G~~~~ 977 (993)
||..+
T Consensus 514 GA~i~ 518 (520)
T 3v2u_C 514 GTCLY 518 (520)
T ss_dssp CSEEE
T ss_pred ceEEe
Confidence 77655
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=3.1e-53 Score=499.52 Aligned_cols=417 Identities=20% Similarity=0.258 Sum_probs=303.0
Q ss_pred HHHHHHHHhcCCCCCCceEEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCC
Q 001939 480 QMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPM 559 (993)
Q Consensus 480 ~~~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 559 (993)
...-...|.+.||. ++.++++||||++|+|||+||+|+.+|++||++++++.+++++++.
T Consensus 39 ~~~~~~~f~~~fg~-~~~~~~~APgrv~L~Geh~D~~g~~vl~~AI~~~~~v~v~~~~~~~------------------- 98 (478)
T 2a2c_A 39 LLKLKEMFNSKFGS-IPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYA------------------- 98 (478)
T ss_dssp HHHHHHHHHHHHSS-CCSEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECSSSC-------------------
T ss_pred HHHHHHHHHHHhCC-CCCEEEEeceEEEEeccceeeCCCeEEEEEecccEEEEEEECCCCe-------------------
Confidence 33445678889985 5668899999999999999999999999999999999999987654
Q ss_pred CeEEEEecccccCCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeC
Q 001939 560 PVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSA 639 (993)
Q Consensus 560 ~~i~i~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~ 639 (993)
++|.+.+.++ +.|+++++++. . ......|.||+++++..+++.++.....|++|.|.|+
T Consensus 99 --i~i~~~~~~~----~~~~~~~~~l~-------~--------~~~~~~~~n~v~~a~~~v~~~~~~~~~~g~~i~i~s~ 157 (478)
T 2a2c_A 99 --LQLANTNPLY----PDFSTSANNIQ-------I--------DKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVDGN 157 (478)
T ss_dssp --EEEEESSTTS----CCEEECCCCC-----------------CCSSCCHHHHHHHHHHHHHHHTTCCSCCCEEEEEEEC
T ss_pred --EEEEECCCCC----cceeccchhcc-------c--------CCCcccHHHHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence 3444332111 12444433321 0 0224689999988888777766641126999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeee
Q 001939 640 VPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVV 719 (993)
Q Consensus 640 iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v 719 (993)
||.|+|||||||++||++.|++.++|.++++++|+++|+.+|+ +.|.|||+|||+++++|+.+.+++++|++... .++
T Consensus 158 IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~-~~g~~~g~~D~~a~~~G~~g~~~~i~f~~~~~-~~~ 235 (478)
T 2a2c_A 158 IPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSER-YIGTEGGGMDQSISFLAEEGTAKLIEFSPLRA-TDV 235 (478)
T ss_dssp SCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHG-GGTCCCCSHHHHHHHHCBTTBEEEEETTTTEE-EEE
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-hcCCCCccHHHHHHHhccCCcEEEEEcCCCce-EEe
Confidence 9999999999999999999999999999999999999999997 68999999999999999777789999988655 788
Q ss_pred cCCCCeEEEEEeCCCcccc-CCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhh
Q 001939 720 EIPSHIRFWGIDSGIRHSV-GGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLC 798 (993)
Q Consensus 720 ~~p~~~~~ll~dSgv~~~~-~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~ 798 (993)
++|+++.|+|+||++++++ ...+||.||.+|...++++. ++.+.. +.+. ..+..+ +...
T Consensus 236 ~~~~~~~~vi~~s~~~~~t~~t~~yn~r~~e~~~A~~~L~--------~~~~~~----~~~~--~~l~d~------~~~~ 295 (478)
T 2a2c_A 236 KLPSGAVFVIANSCVEMNKAATSHFNIRVMECRLAAKLLA--------KYKSLQ----WDKV--LRLEEV------QAKL 295 (478)
T ss_dssp CCCTTEEEEEEECCCCCCGGGSSHHHHHHHHHHHHHHHHH--------HHTTCC----TTTC--CCHHHH------HHHH
T ss_pred cCCCCcEEEEEeCCCcccccccchhHHHHHHHHHHHHHHH--------hhhccc----cccc--chHHhh------hhhh
Confidence 8888999999999999975 35899999999855444433 221100 0000 011111 0111
Q ss_pred cCChHHHHHHHhhcCCc------------cchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHH
Q 001939 799 NLSPHRFEALYAKNIPE------------SIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLT 866 (993)
Q Consensus 799 ~~~~~~~~~~~~~~lp~------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~ 866 (993)
....+++-+...+.+.+ .++.++|.+.|.+.. ++ ....|.+++|++|++.|+.||.+++++|+
T Consensus 296 ~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~-~~----~~~~~~~~~ra~h~~~e~~rv~~~~~aL~ 370 (478)
T 2a2c_A 296 GISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPN-TQ----DVLIFKLYQRAKHVYSEAARVLQFKKICE 370 (478)
T ss_dssp TCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGG-GT----TCCCBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccc-cc----cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122221111111110 011122323222110 00 11234577899999999999999999998
Q ss_pred ccCChhHHHHHHHHHHHhhhhhhhc-CCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCccc
Q 001939 867 AAASDDQLTSLGELLYQCHYSYSAC-GLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRS 945 (993)
Q Consensus 867 ~~~~~~~l~~lG~Lm~~sH~slr~~-~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~ 945 (993)
+ +.++|++.||++|+++|.+||++ ++|||++|+|+++|++ .|++|+||||||||||+++|.+++. .
T Consensus 371 ~-~~~~d~~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~-----------~Ga~GarltGAG~GG~viaLv~~~~-~ 437 (478)
T 2a2c_A 371 E-APENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRK-----------FGAQGSRLTGAGWGGCTVSMVPADK-L 437 (478)
T ss_dssp H-CCTTHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-----------TTCSEEEECTTCSSSEEEEEEEGGG-H
T ss_pred h-ccccHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh-----------CCCcEEEeccCCCccEEEEEEcHHH-H
Confidence 7 11239999999999999999996 6999999999999988 6999999999999999998765433 4
Q ss_pred HHHHHHHHHHHHhhcC-----CCCcEEee-cCCCCcce
Q 001939 946 SEQVLEIQQRYKDATG-----YLPLIIEG-SSPGAGKF 977 (993)
Q Consensus 946 ~~~~~~i~~~y~~~~g-----~~~~~~~~-~~~G~~~~ 977 (993)
+++++++++.|+++++ ..+.+|++ ++.||+.+
T Consensus 438 ~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~p~~Ga~~~ 475 (478)
T 2a2c_A 438 PSFLANVHKAYYQRSDGSLAPEKQSLFATKPGGGALVL 475 (478)
T ss_dssp HHHHHHHHHHHHC---------CCSEEEECCBCCCEEE
T ss_pred HHHHHHHHHHHHHhcCccccCCCCcEEEEcCCCCeEee
Confidence 6899999999998875 25788887 78888766
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=2e-51 Score=477.85 Aligned_cols=381 Identities=24% Similarity=0.359 Sum_probs=303.2
Q ss_pred HHHHHHHhcCCCCCCceEEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCC
Q 001939 481 MRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMP 560 (993)
Q Consensus 481 ~~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 560 (993)
..-+..|...||.++.++.++|||||||+|||+||+|+.+|++||++++++.+++++++.
T Consensus 32 ~~~~~~f~~~~g~~~~~~~~~APgkv~L~Geh~d~~G~~~l~~aI~l~~~v~v~~~~~~~-------------------- 91 (419)
T 1pie_A 32 SALTEKFAEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKK-------------------- 91 (419)
T ss_dssp HHHHHHHHHHHSCCCSCEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSE--------------------
T ss_pred HHHHHHHHHHhCCCCceEEEEeeEEEEEcccceeeCCCEEEEEEEcccEEEEEEECCCCE--------------------
Confidence 334567888998654427899999999999999999999999999999999999987643
Q ss_pred eEEEEecccccCCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCC
Q 001939 561 VLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAV 640 (993)
Q Consensus 561 ~i~i~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~i 640 (993)
+++.+.+.+ . ....+++++++. ..+...|.||+++++..+ ++.+..+..|++|.|.|+|
T Consensus 92 -i~i~~~~~~--~-~~~~~~~~~~~~----------------~~~~~~~~n~v~~~~~~l-~~~g~~~~~g~~i~i~s~I 150 (419)
T 1pie_A 92 -VKLYSENFP--K-LGVIEFDLDEVE----------------KKDGELWSNYVKGMIVML-KGAGYEIDKGFELLIKGEI 150 (419)
T ss_dssp -EEEEETTCG--G-GCCEEEETTCTT----------------SCCTTCTHHHHHHHHHHH-HHTTCCCCSCEEEEEEECS
T ss_pred -EEEEECCCC--C-cceeEEeccccc----------------CCCCcCHHHHHHHHHHHH-HHhCCCCCCCEEEEEECCC
Confidence 333332110 0 001223332210 012368999999988764 4555443369999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeec
Q 001939 641 PEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVE 720 (993)
Q Consensus 641 P~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~ 720 (993)
|.|+|||||||++||++.|++.++|.++++++|+++|+.+|++++|.|||+|||+++++||.+.++++++++..+ ++++
T Consensus 151 P~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d~~~~~~-~~l~ 229 (419)
T 1pie_A 151 PTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKY-EMVP 229 (419)
T ss_dssp CTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTTCCE-EEEE
T ss_pred CCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEeecCCCce-EEee
Confidence 999999999999999999999999999999999999999999999999999999999999999888899887655 7888
Q ss_pred CC-CCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhc
Q 001939 721 IP-SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCN 799 (993)
Q Consensus 721 ~p-~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~ 799 (993)
+| +++.|++++|++++++...+||.||.+|...++++.+ ......+++
T Consensus 230 ~~~~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~~~l~~-------------------------------~~~v~~l~~ 278 (419)
T 1pie_A 230 VELRDYDIVIMNTNKPRALTESKYNERFAETREALKRMQT-------------------------------RLDIQSLGE 278 (419)
T ss_dssp CCCTTEEEEEEECCCCCCTTCHHHHHHHHHHHHHHHHHHH-------------------------------HCCCSSGGG
T ss_pred cCCCCcEEEEEECCCccccccchHHHHHHHHHHHHHHHhh-------------------------------ccccCchhh
Confidence 87 6899999999999999989999999888433333221 001234566
Q ss_pred CChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHH
Q 001939 800 LSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGE 879 (993)
Q Consensus 800 ~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~ 879 (993)
++++.+++. ...+|+. ..++|+.|++.|+.|+.++..+|+++ |++.||+
T Consensus 279 ~~~~~~~~~-~~~l~~~--------------------------~~~~~~~~~v~e~~r~~~~~~al~~~----d~~~lg~ 327 (419)
T 1pie_A 279 LSNEEFDAN-TDLIGDE--------------------------TLIKRARHAVYENNRTKIAQKAFVAG----NLTKFGE 327 (419)
T ss_dssp CCHHHHHHT-GGGTCCH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHT----CHHHHHH
T ss_pred CCHHHHHHH-HhhcCcH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHcC----CHHHHHH
Confidence 666655442 1223210 13467899999999999999999986 9999999
Q ss_pred HHHHhhhhhhh-cCCCCchHHHHHHHHHHHhhhccccCCCC-cccceeeeccccCceEEEEccCCcccHHHHHHHHHHHH
Q 001939 880 LLYQCHYSYSA-CGLGSDGTDRLVQLVQEIQHSKVSKSKDG-TLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYK 957 (993)
Q Consensus 880 Lm~~sH~slr~-~~vs~~~lD~lv~~a~~~~~~~~~~~~~~-g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~ 957 (993)
+|+++|.+|++ +++++|++|+|++.+++ . |++|+||||||||||+++|.+++. ++++++++++.|+
T Consensus 328 lm~~~~~~l~~~~~~~~p~l~~l~~~a~~-----------~~Ga~ga~lsGaG~Gg~v~al~~~~~-a~~~~~~l~~~~~ 395 (419)
T 1pie_A 328 LLNASHASLKDDYEVTGLELDTLAETAQK-----------QAGVLGARMTGAGFGGCAIALVAHDN-VSAFRKAVGQVYE 395 (419)
T ss_dssp HHHHHHHHHHHTSCCCCHHHHHHHHHHHH-----------STTEEEEEECSSCSSSEEEEEEEGGG-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHh-----------cCCCceeeEecCCCCeEEEEEEchhh-HHHHHHHHHHHHH
Confidence 99999999999 79999999999999987 4 999999999999999997765533 4689999999999
Q ss_pred hhcCCCCcEEee-cCCCCcce
Q 001939 958 DATGYLPLIIEG-SSPGAGKF 977 (993)
Q Consensus 958 ~~~g~~~~~~~~-~~~G~~~~ 977 (993)
+++|..+.+|++ +++|++++
T Consensus 396 ~~~g~~~~~~~~~~~~Ga~v~ 416 (419)
T 1pie_A 396 EVVGYPASFYVAQIGSGSTKL 416 (419)
T ss_dssp HHHSSCCEEEECCBCCCSBCC
T ss_pred HhcCCCCeEEEEcCCCCeeec
Confidence 889999999987 68888764
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=2.5e-49 Score=457.50 Aligned_cols=375 Identities=24% Similarity=0.345 Sum_probs=287.5
Q ss_pred HHHHHHHHhcCCCCCCceEEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCC
Q 001939 480 QMRERKAAAGLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPM 559 (993)
Q Consensus 480 ~~~~~~~~~~~f~~~~~~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 559 (993)
.......|.+.||.+ +++.++|||||||+|||+||+|+.+|++||++++++.+++++++.
T Consensus 20 ~~~~~~~f~~~~~~~-~~~~~~APgkv~L~Geh~Dy~~~~~l~~ai~~~~~v~v~~~~~~~------------------- 79 (399)
T 1wuu_A 20 LAEARRAFREEFGAE-PELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGL------------------- 79 (399)
T ss_dssp HHHHHHHHHHHHSSC-CSEEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEETTCE-------------------
T ss_pred HHHHHHHHHHHhCCC-CCEEEEeeeeEEEeccccccCCCEEEeEEecccEEEEEEECCCCe-------------------
Confidence 444566788899864 567899999999999999999999999999999999999987654
Q ss_pred CeEEEEecccccCCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeC
Q 001939 560 PVLQIVSYGSELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSA 639 (993)
Q Consensus 560 ~~i~i~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~ 639 (993)
+++.+.+.+. .....++++++++ +++ ...+...|.||+++++..+ .+... .|++|.|.|+
T Consensus 80 --i~i~~~~~~~-~~~~~~~~~~~~~----~~~---------~~~~~~~~~n~v~~a~~~l---~~~~~-~g~~i~i~s~ 139 (399)
T 1wuu_A 80 --VSLLTTSEGA-DEPQRLQFPLPTA----QRS---------LEPGTPRWANYVKGVIQYY---PAAPL-PGFSAVVVSS 139 (399)
T ss_dssp --EEEEECCSSS-CSCSEEEEECCCS----SCC---------CCCCSSGGGHHHHHHHHHC---SSSCC-CEEEEEEEEC
T ss_pred --EEEEECCCCC-ccccceEEecCcc----ccc---------cccCCCCHHHHHHHHHHHh---cCCCC-CCeEEEEECC
Confidence 3343321110 0000012222210 000 0123467999999988764 34444 6999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeee
Q 001939 640 VPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVV 719 (993)
Q Consensus 640 iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v 719 (993)
||.|+|||||||++||++.|++.++|.++++++|+++|+.+|+.++|.|||+|||+++++||.+.++++++++..+ +++
T Consensus 140 IP~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~-~~~ 218 (399)
T 1wuu_A 140 VPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLET-SLV 218 (399)
T ss_dssp SCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEETTTCCE-EEE
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEEecCCCce-EEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999888898877554 677
Q ss_pred cCC-CCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhh
Q 001939 720 EIP-SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLC 798 (993)
Q Consensus 720 ~~p-~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~ 798 (993)
++| +++.+++++|+++++|....||.||.+|...+ +.|.. ..++
T Consensus 219 ~~~~~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~--------~~l~~---------------------------~~l~ 263 (399)
T 1wuu_A 219 PLSDPKLAVLITNSNVRHSLASSEYPVRRRQCEEVA--------RALGK---------------------------ESLR 263 (399)
T ss_dssp ECCCSSEEEEEEEEEEEC--CTTTHHHHHHHHHHHH--------HHTTC---------------------------SSTT
T ss_pred cCCCCCeEEEEEECCCccccccccHHHHHHHHHHHH--------HHhCh---------------------------hhhh
Confidence 876 48999999999999999889999988763222 22211 1234
Q ss_pred cCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHH
Q 001939 799 NLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLG 878 (993)
Q Consensus 799 ~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG 878 (993)
+++++.+.... +.+++ ..++|+.|++.|+.|+.+++.+|+++ |++.||
T Consensus 264 ~~~~~~~~~~~-~~l~~---------------------------~~~~r~~~~~~e~~r~~~~~~al~~~----d~~~lg 311 (399)
T 1wuu_A 264 EVQLEELEAAR-DLVSK---------------------------EGFRRARHVVGEIRRTAQAAAALRRG----DYRAFG 311 (399)
T ss_dssp SCCHHHHTTGG-GGSCH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHTT----CHHHHH
T ss_pred cCCHHHHHHHH-hhcCH---------------------------HHHHHHHHHHhhHHHHHHHHHHHHcC----CHHHHH
Confidence 44444332211 11211 13467899999999999999999986 999999
Q ss_pred HHHHHhhhhhhh-cCCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHH
Q 001939 879 ELLYQCHYSYSA-CGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYK 957 (993)
Q Consensus 879 ~Lm~~sH~slr~-~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~ 957 (993)
++|+++|++|++ +++++|++|+|++.+++. .|++|+||||||||||+++|.+++ ..+++++++.+.|
T Consensus 312 ~~m~~~h~~l~~~~~~~~p~l~~l~~~a~~~----------~Ga~ga~~sGaG~Gg~v~~l~~~~-~~~~~~~~l~~~~- 379 (399)
T 1wuu_A 312 RLMVESHRSLRDDYEVSCPELDQLVEAALAV----------PGVYGSRMTGGGFGGCTVTLLEAS-AAPHAMRHIQEHY- 379 (399)
T ss_dssp HHHHHHHHHHHHTSCCCCHHHHHHHHHHHTS----------TTEEEEEECSSCSEEEEEEEEEGG-GHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHhc----------CCceEEeeecCCCccEEEEEEccc-hHHHHHHHHHHHh-
Confidence 999999999997 799999999999999751 489999999999999999776553 2356777777666
Q ss_pred hhcCCCCcEEee-cCCCCcce
Q 001939 958 DATGYLPLIIEG-SSPGAGKF 977 (993)
Q Consensus 958 ~~~g~~~~~~~~-~~~G~~~~ 977 (993)
|..+.+|.+ +++|++++
T Consensus 380 ---~~~~~~~~~~~~~Ga~~~ 397 (399)
T 1wuu_A 380 ---GGTATFYLSQAADGAKVL 397 (399)
T ss_dssp ---SSCCEEEEECCCCCSEEC
T ss_pred ---CCCCcEEEEcCCCCeeec
Confidence 778889887 68888754
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=100.00 E-value=3.2e-47 Score=432.74 Aligned_cols=347 Identities=22% Similarity=0.357 Sum_probs=275.3
Q ss_pred eEEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCC
Q 001939 497 IFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGP 576 (993)
Q Consensus 497 ~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~ 576 (993)
+++++|||||||+|||+||+|+.+|++||++++++.+++++++++++. +.+ .. .
T Consensus 1 m~~~~aP~ki~L~Ge~~d~~~~~~l~~ai~~~~~v~v~~~~~~~i~i~---------------------~~~--~~---~ 54 (350)
T 2cz9_A 1 MIKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKHGEVILYSE---------------------HFG--EE---R 54 (350)
T ss_dssp CEEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEESSEEEEET---------------------TTT--EE---E
T ss_pred CeEEEeccEEEEeecChhhCCCEEEEEEeeceEEEEEEECCCCeEEEE---------------------ECC--CC---c
Confidence 357899999999999999999999999999999999998776543332 110 00 0
Q ss_pred ceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHH
Q 001939 577 TFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVAS 656 (993)
Q Consensus 577 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~ 656 (993)
..++ ++. .+...|.||+++++.. +++.+... .|++|.+.|+||.|+|||||||++||+
T Consensus 55 ~~~~-l~~-------------------~~~~~~~~~~~~~~~~-l~~~~~~~-~g~~i~i~s~IP~g~GLGSSaA~~vA~ 112 (350)
T 2cz9_A 55 KFSL-NDL-------------------RKENSWIDYVKGIFWV-LKESDYEV-GGIKGRVSGNLPLGAGLSSSASFEVGI 112 (350)
T ss_dssp EECT-TCC-------------------CCCSSTHHHHHHHHHH-HHHTTCCC-CEEEEEEECSCCTTSSSCHHHHHHHHH
T ss_pred cccc-cCC-------------------CCCCcHHHHHHHHHHH-HHhcCCCC-CCeEEEEECCCCCCCCcchHHHHHHHH
Confidence 0010 100 1236799999887665 45566654 699999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCCCcc
Q 001939 657 MSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRH 736 (993)
Q Consensus 657 ~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv~~ 736 (993)
+.|++.++|.++++++|+++|+.+|.+++|+|||+||++++++|+.+.++++|+++..+ +++++|+++++++++++++|
T Consensus 113 ~~al~~l~~~~l~~~el~~la~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~~d~~~~~~-~~l~~~~~~~~vl~~~~~~~ 191 (350)
T 2cz9_A 113 LETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFLDTHTLDY-EYIPFPKDVSILVFYTGVRR 191 (350)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCTTEEEEEETTTCCE-EEEECCTTEEEEEEECSCC-
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhcCCCeEEEEecCCCcE-EEEcCCCCcEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999998899999877554 78888889999999999998
Q ss_pred ccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCcc
Q 001939 737 SVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPES 816 (993)
Q Consensus 737 ~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~ 816 (993)
++....|+.||.+|...++.+. .+.|+++.++++ ..+|+
T Consensus 192 ~~~t~~~~~r~~~~~~a~~~~~-----------------------------------~~~lr~~~~~~~-----~~l~~- 230 (350)
T 2cz9_A 192 ELASSEYAERKHIAEESLKILG-----------------------------------KGSSKEVREGEL-----SKLPP- 230 (350)
T ss_dssp ---CHHHHHHHHHHHHHHHHHT-----------------------------------CSCGGGCCGGGG-----GGSCH-
T ss_pred ccccchHHHHHHHHHHHHHHhC-----------------------------------hhhhhhCCHHHH-----hhCCH-
Confidence 8777679988877632221110 122344333221 11221
Q ss_pred chhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhhhh-cCCCC
Q 001939 817 IVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSA-CGLGS 895 (993)
Q Consensus 817 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~slr~-~~vs~ 895 (993)
.++++..|++.|+.|+..+..+|.++ |++.||++|+++|.+|++ +++++
T Consensus 231 --------------------------~~~~~~~~~~~~~~~~~~~~~al~~~----d~~~lg~~~~~~~~~l~~~~~~~~ 280 (350)
T 2cz9_A 231 --------------------------LHRKFFGYIVRENARVLEVRDALKEG----NVEEVGKILTTAHWDLAKNYEVSC 280 (350)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred --------------------------HHHHHHHHHhhHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHHhcCCC
Confidence 12346789999999999999999986 999999999999999998 79999
Q ss_pred chHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCcEEee-cCCCC
Q 001939 896 DGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG-SSPGA 974 (993)
Q Consensus 896 ~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~-~~~G~ 974 (993)
|++|+|++.+++ .|++|+||||+|||||++++.+++. .+++++++++.|++.+|+.+.+|++ +++|+
T Consensus 281 p~l~~l~~~~~~-----------~Ga~ga~lsGaG~G~~v~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ga 348 (350)
T 2cz9_A 281 KELDFFVERALK-----------LGAYGARLTGAGFGGSAIALVDKED-AETIGEEILREYLKRFPWKARHFIVEPSDGV 348 (350)
T ss_dssp HHHHHHHHHHHH-----------TTCSEEEECSSCSSSEEEEEEEGGG-HHHHHHHHHHHHHHHCCSCCEEEEECEECCS
T ss_pred HHHHHHHHHHHH-----------cCCCEEEEecCCCceEEEEEEchhh-HHHHHHHHHHHHHHhhCCCCcEEEecCCCCC
Confidence 999999999988 6899999999999999997765542 4688999999999888999999987 57887
Q ss_pred c
Q 001939 975 G 975 (993)
Q Consensus 975 ~ 975 (993)
+
T Consensus 349 ~ 349 (350)
T 2cz9_A 349 G 349 (350)
T ss_dssp B
T ss_pred C
Confidence 6
No 6
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-46 Score=424.37 Aligned_cols=322 Identities=15% Similarity=0.156 Sum_probs=226.0
Q ss_pred eEEEEcCcccccccccccc------cCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccc
Q 001939 497 IFVARAPGRLDVMGGIADY------SGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSE 570 (993)
Q Consensus 497 ~~~~~APGRv~L~GeH~dy------~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~ 570 (993)
+++++|||||||+|||+|| +||.||++||++++++++++++|+++++ .|.+.
T Consensus 3 mi~~~APgRvnL~GehtD~~~~~~~~gG~vl~~AId~~~~v~i~~~~d~~i~i---------------------~s~~~- 60 (357)
T 3k85_A 3 LVRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEI---------------------NAYDA- 60 (357)
T ss_dssp CEEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEEEEEEEEEEECSSSEEEE---------------------EETTT-
T ss_pred EEEEECceEEEEecCCccCcchhhcCCCEEEEEEEeCcEEEEEEECCCCeEEE---------------------EECCC-
Confidence 4678999999999999999 8999999999999999999998765444 33211
Q ss_pred cCCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHH
Q 001939 571 LSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSA 650 (993)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSA 650 (993)
. ...++++++ + .+...|.||+++++..+. +.+.....|++|.+.++||.|+||||||
T Consensus 61 -~---~~~~~~~~~------~------------~~~~~~~~~v~~~~~~l~-~~~~~~~~g~~i~i~~~iP~g~GLgSSa 117 (357)
T 3k85_A 61 -Q---CCKSYLSMS------Q------------LEIDGEASLIKGVYNRII-RDYRLEPKSFKITTYNDAPAGSGLGTSS 117 (357)
T ss_dssp -T---EEEEEECCS------S------------CCCCSSSHHHHHHHHHHH-HHTTCCCCCEEEEEEESSCSSSSSCHHH
T ss_pred -C---ceEEEeccc------c------------ccccchHHHHHHHHHHHH-HhcCCCCCCEEEEEecCCCCCCCchHHH
Confidence 0 011223221 0 123689999999998754 4443212699999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCC------
Q 001939 651 SVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSH------ 724 (993)
Q Consensus 651 A~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~------ 724 (993)
|++||++.|++.+++.++++++|+++|+++|+.++|.|||+|||+++++||.+.+.+.++++..+ +++++++.
T Consensus 118 a~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~~~~~~~~-~~l~~~~~~~~~l~ 196 (357)
T 3k85_A 118 TMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFLQNDLVIV-NPLKMKRWIVDELE 196 (357)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEETTTEEEE-EEECCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHhCCceEEEEeCCCceeE-EEEecChhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999987766665554433 56777643
Q ss_pred eEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHH
Q 001939 725 IRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHR 804 (993)
Q Consensus 725 ~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~ 804 (993)
+.++|++|+.+|++.. ++.++. + .+.
T Consensus 197 ~~lvi~~t~~~~~a~~---------------~l~~~~------------------------~---------~~~------ 222 (357)
T 3k85_A 197 SSMVLYFTGRSRSSAA---------------IINEQK------------------------K---------NTS------ 222 (357)
T ss_dssp HTEEEECC------------------------------------------------------------------------
T ss_pred ceEEEEECCCcccHHH---------------HHHHHH------------------------H---------Hhh------
Confidence 5789999999887531 111100 0 000
Q ss_pred HHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHh
Q 001939 805 FEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQC 884 (993)
Q Consensus 805 ~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~s 884 (993)
..++ ...|+.|.+.| |+.+++++|+++ |++.||++|+++
T Consensus 223 -------~~~~----------------------------~~~~~~~~i~~--~~~~~~~aL~~~----d~~~lg~lm~~~ 261 (357)
T 3k85_A 223 -------EGNQ----------------------------TAIEAMHKIKQ--SAIDTKLALLKG----DVGEFARILGEG 261 (357)
T ss_dssp ----------C----------------------------CTTHHHHHHHH--HHHHHHHHHTTT----CHHHHHHHHHHH
T ss_pred -------cCcH----------------------------HHHHHHHHHHH--HHHHHHHHHHcC----CHHHHHHHHHHH
Confidence 0000 11356777765 788999999986 999999999999
Q ss_pred hhhhhh--cCCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCC
Q 001939 885 HYSYSA--CGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGY 962 (993)
Q Consensus 885 H~slr~--~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~ 962 (993)
|.++++ ++||||++|+|++.|++ .|++|+||||||+|||++++.+++. ++++.++.+ +.|.
T Consensus 262 ~~~l~~~~~~vs~p~ld~l~~~a~~-----------~Ga~GaklsGaG~gG~vial~~~~~-----~~~~~~~l~-~~g~ 324 (357)
T 3k85_A 262 WENKKKMAGAITNPMIQEAFDVATG-----------AGAMAGKVSGAGGGGFIMFVVEPTR-----KEEVVRALN-NLNG 324 (357)
T ss_dssp HHHTTC-----------CCSCTTTT-----------SCCSEEEECCCC---CEEEECCHHH-----HHHHHHHHH-TSSS
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHh-----------cCCeEeEecccCCCCEEEEEecHHH-----HHHHHHHHH-HCCC
Confidence 999997 59999999999998876 6999999999999999998875422 234444444 2355
Q ss_pred CCcEEeecCCCCcc
Q 001939 963 LPLIIEGSSPGAGK 976 (993)
Q Consensus 963 ~~~~~~~~~~G~~~ 976 (993)
....+.....|+++
T Consensus 325 ~~~~~~~~~~G~~v 338 (357)
T 3k85_A 325 FVMPFQFIDDGAHG 338 (357)
T ss_dssp CBCCCCBCCCCCEE
T ss_pred eEEEeEEcCCceEE
Confidence 44444446788776
No 7
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=100.00 E-value=2.6e-42 Score=398.38 Aligned_cols=343 Identities=20% Similarity=0.222 Sum_probs=239.9
Q ss_pred ceEEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 001939 496 EIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (993)
Q Consensus 496 ~~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (993)
++++++|||||+|+|||+||+|++||++||++++++.+++++++++++.+ .+.+
T Consensus 4 ~~~~~~APgrv~L~Geh~d~~g~~~l~~ai~~~~~v~v~~~~~~~i~i~~---------------------~~~~----- 57 (395)
T 1kvk_A 4 EVLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNL---------------------PNVG----- 57 (395)
T ss_dssp SCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEE---------------------TTTT-----
T ss_pred CcEEEEeCeEEEEecCCeeeECCEeeeeEeeccEEEEEEECCCCeEEEEc---------------------CCCC-----
Confidence 35789999999999999999999999999999999999999876554431 1100
Q ss_pred CceeccCCccccC----CCCc-----chHhhhcccCCCCCCChHHHH-----HHHHHHHHHHhCCC-CCCCEEEEEEeCC
Q 001939 576 PTFDMDLSDFMDE----GKPM-----SYEKAKKYFDTNPSQKWAAYV-----AGTILVLMTELGVR-FEDSISMLVSSAV 640 (993)
Q Consensus 576 ~~~~~~l~~~~~~----~~~~-----~~~~~~~~~~~~~~~~W~~yv-----~~~i~~~~~~~g~~-~~~g~~i~i~s~i 640 (993)
..++++++++... +.+. ..+....+-.......|.||+ ..++..+.+..+.. ...|++|.+.|+|
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~g~~i~i~s~i 137 (395)
T 1kvk_A 58 IKQVWDVATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSEL 137 (395)
T ss_dssp EEEEEEHHHHHTSCC----------------CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESS
T ss_pred ceEEEEhHhhhhhhcccccccccccccHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHhccccCCCCEEEEEEecC
Confidence 0011222211000 0000 000000000000124799994 33333233233431 1269999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhCC-----CCC-------H---HHHHHHHHHHhccccCCCCCcchhhHhhccccceE
Q 001939 641 PEGKGVSSSASVEVASMSAIAAAHGL-----NIH-------P---RDLALLCQKVENHIVGAPCGVMDQMASACGEANKL 705 (993)
Q Consensus 641 P~g~GLgSSAA~~Va~~~al~~~~g~-----~l~-------~---~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~ 705 (993)
|.|+|||||||++||++.|++.++|. +++ + .+|+++|+.+|+.++|.|||+ ||+++++||.
T Consensus 138 P~g~GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~-D~~~~~~Gg~--- 213 (395)
T 1kvk_A 138 PPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV-DNSVSTWGGA--- 213 (395)
T ss_dssp CTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSH-HHHHHHHCSE---
T ss_pred CCCCCccHHHHHHHHHHHHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCc-chHHhhhcce---
Confidence 99999999999999999999999999 788 7 456667999999999999998 9999999984
Q ss_pred EEEeecCccceeeecCCCCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhh
Q 001939 706 LAMVCQPAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGV 785 (993)
Q Consensus 706 ~~i~~~~~~~~~~v~~p~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 785 (993)
+++ ++..+ ++++.++++++++++|+++++|.. +++.+.
T Consensus 214 ~~~--~~~~~-~~l~~~~~~~~vl~~~~~~~~T~~---------------~~~~~~------------------------ 251 (395)
T 1kvk_A 214 LRY--QQGKM-SSLKRLPALQILLTNTKVPRSTKA---------------LVAGVR------------------------ 251 (395)
T ss_dssp EEE--SSSCE-EECSCCCCEEEEEEECCCCCCHHH---------------HHHHHH------------------------
T ss_pred EEE--cCCCc-eeccCCCCcEEEEEECCCCCchHH---------------HHHHHH------------------------
Confidence 444 34444 677766789999999999988742 111110
Q ss_pred HHHHHhhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHH-HHH
Q 001939 786 ELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAF-KAL 864 (993)
Q Consensus 786 ~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~-~~a 864 (993)
.+.+ ..|+.+. .+++++.|++.|+.|+... ..+
T Consensus 252 ----------~~~~------------~~~~~~~------------------------~~~~~~~~~~~~~~~~l~~~~~a 285 (395)
T 1kvk_A 252 ----------SRLI------------KFPEIMA------------------------PLLTSIDAISLECERVLGEMAAA 285 (395)
T ss_dssp ----------HHHH------------HSHHHHH------------------------HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ----------HHHH------------HCHHHHH------------------------HHHHHHHHHHHHHHHHHHhhhcc
Confidence 0000 0111000 1234678899998887765 456
Q ss_pred HHccCChhHHHHHHHHHHHhhhhhhhcCCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcc
Q 001939 865 LTAAASDDQLTSLGELLYQCHYSYSACGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLR 944 (993)
Q Consensus 865 l~~~~~~~~l~~lG~Lm~~sH~slr~~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~ 944 (993)
|.+ +|++.||++|+++|.+|+++++++|++|+|++.+++ .|+ |+||||||||||++++.+++.
T Consensus 286 l~~----~d~~~lg~lm~~~~~~l~~~~~~~p~l~~l~~~a~~-----------~Ga-ga~~sGaG~Gg~v~~l~~~~~- 348 (395)
T 1kvk_A 286 PVP----EQYLVLEELMDMNQHHLNALGVGHASLDQLCQVTAA-----------HGL-HSKLTGAGGGGCGITLLKPGL- 348 (395)
T ss_dssp CCH----HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH-----------TTC-EEEECSSCSSSEEEEEECTTC-
T ss_pred ccH----HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-----------cCC-ceeeccCCCCCEEEEEecCCC-
Confidence 665 499999999999999999999999999999999988 588 999999999999998876543
Q ss_pred cHHHHHHHHHHHHhhcCCCCcEEee--cCCCCcc
Q 001939 945 SSEQVLEIQQRYKDATGYLPLIIEG--SSPGAGK 976 (993)
Q Consensus 945 ~~~~~~~i~~~y~~~~g~~~~~~~~--~~~G~~~ 976 (993)
.+++++++.+.|++. |+. +|.+ ...|+++
T Consensus 349 ~~~~~~~~~~~~~~~-g~~--~~~~~~~~~G~~v 379 (395)
T 1kvk_A 349 ERAKVEAAKQALTGC-GFD--CWETSIGAPGVSM 379 (395)
T ss_dssp CHHHHHHHHHHHHHT-TCE--EEEEEESCCCSEE
T ss_pred CHHHHHHHHHHHHHc-CCE--EEEEecCCCcEEE
Confidence 257888998888854 543 5654 5777754
No 8
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=100.00 E-value=2e-41 Score=385.15 Aligned_cols=304 Identities=15% Similarity=0.160 Sum_probs=229.6
Q ss_pred ceEEEEcCccccccccccccc-CCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCC
Q 001939 496 EIFVARAPGRLDVMGGIADYS-GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNR 574 (993)
Q Consensus 496 ~~~~~~APGRv~L~GeH~dy~-gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~ 574 (993)
.+++++|||||+|+|||+||+ ||+||++||+++++++++++++.. |.+.. +..
T Consensus 5 ~~i~~~APGrv~L~GEh~~~~~g~~~l~~Ai~~~~~v~v~~~~~~~-----------------------i~s~~--~~~- 58 (365)
T 3k17_A 5 NKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNE-----------------------LWIPH--YEN- 58 (365)
T ss_dssp CCEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCE-----------------------EECTT--CSS-
T ss_pred eEEEEEecceEEEecccEEecCCCEEEEEEccCcEEEEEEECCCcE-----------------------EEecC--CCc-
Confidence 467899999999999999995 999999999999999999987642 22221 100
Q ss_pred CCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHH---HhCCCCCCCEEEEEEeCCCC----CCCCc
Q 001939 575 GPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMT---ELGVRFEDSISMLVSSAVPE----GKGVS 647 (993)
Q Consensus 575 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~---~~g~~~~~g~~i~i~s~iP~----g~GLg 647 (993)
.+++++++. + ..+...| ||+++++..+.+ +.|... .|++|.|.|+||. ++|||
T Consensus 59 --~~~~~~~~~------~----------~~~~~~~-~yv~~~i~~~~~~~~~~g~~~-~g~~i~i~s~iP~~~g~~~GLg 118 (365)
T 3k17_A 59 --PVSWPIGGE------L----------KPDGEHW-TFTAEAINIATTFLKSEGIEL-TPVKMVIETELIDQSGAKYGLG 118 (365)
T ss_dssp --CBCCCTTSC------C----------CCSCGGG-HHHHHHHHHHHHHHHHTTCCC-CCEEEEEEESSBCTTSCBCSSC
T ss_pred --ceeeecccC------C----------CCCCChH-HHHHHHHHHHHHHHHhcCCCC-CCEEEEEEcCCCCCCCCCCccc
Confidence 122222210 0 0123457 999999886543 346655 7999999999996 57999
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEe-ec---------------
Q 001939 648 SSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV-CQ--------------- 711 (993)
Q Consensus 648 SSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~-~~--------------- 711 (993)
||||++||++.|++.+++.++++++|+++|+.+|+.++|.++| |||+++++||. +++. +.
T Consensus 119 SSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~g~~~g-~D~~~~~~Gg~---~~~~~~~~~~~~~~~~~~~l~~ 194 (365)
T 3k17_A 119 SSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQGNGSC-GDIASCMYGGW---IAYTTFDQEWVKHRLAYKSLEW 194 (365)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSSCCS-HHHHHHHHCSE---EEEECCCHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCc-ccHHHHhcCCE---EEEecCCHHHhhhhcccchhhh
Confidence 9999999999999999999999999999999999999995555 89999999994 4443 21
Q ss_pred -------CccceeeecCCCCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchh
Q 001939 712 -------PAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDG 784 (993)
Q Consensus 712 -------~~~~~~~v~~p~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 784 (993)
...+ +++++|.+ +++++||+++++|.. +++.+.
T Consensus 195 l~~~~w~~~~~-~~l~~~~~-~lll~~t~~~~sT~~---------------~~~~v~----------------------- 234 (365)
T 3k17_A 195 FMKEPWPMLQI-ETLEEPVP-TFSVGWTGTPVSTGK---------------LVSQIH----------------------- 234 (365)
T ss_dssp HHHSCCTTCEE-EEECCCSS-EEEEEECSCCCCHHH---------------HHHHHH-----------------------
T ss_pred hhccCCCCcce-eeccCCcc-cEEEEECCCccchHH---------------HHHHHH-----------------------
Confidence 1222 56777778 999999999998641 221110
Q ss_pred hHHHHHhhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchh-hHHHHHHH
Q 001939 785 VELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYEN-FRVKAFKA 863 (993)
Q Consensus 785 ~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~-~Rv~~~~~ 863 (993)
.+++ ..| .+.+|++.|+ .++.++++
T Consensus 235 -----------~~~~------------~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 260 (365)
T 3k17_A 235 -----------AFKQ------------EDS-------------------------------KNYQHFLTRNNEIMKQIIQ 260 (365)
T ss_dssp -----------HHHH------------HCH-------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHH------------hCh-------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 0111 000 0135667774 46789999
Q ss_pred HHHccCChhHHHHHHHHHHHhhhhhhhcCC------CCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEE
Q 001939 864 LLTAAASDDQLTSLGELLYQCHYSYSACGL------GSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICV 937 (993)
Q Consensus 864 al~~~~~~~~l~~lG~Lm~~sH~slr~~~v------s~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~ 937 (993)
+|+++ |++.||++|+++|.+||++++ ++|++|+|++.|++ .|++ +||||||||||+++
T Consensus 261 aL~~g----d~~~lg~lm~~~~~~l~~l~v~~~~~is~p~ld~l~~~a~~-----------~Ga~-ak~sGAGgGg~via 324 (365)
T 3k17_A 261 AFHTK----DEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAEN-----------MGGA-GKSSGSGGGDCGIA 324 (365)
T ss_dssp HHHHT----CHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHH-----------TTSE-EEECTTCSSSEEEE
T ss_pred HHHhC----CHHHHHHHHHHHHHHHHHhhhhcCCcccCHHHHHHHHHHHh-----------cCCE-EEecCCCCCCEEEE
Confidence 99986 999999999999999999876 99999999999988 5777 99999999999998
Q ss_pred EccCCcccHHHHHHHHHHHHhhcCCCC
Q 001939 938 IGRNSLRSSEQVLEIQQRYKDATGYLP 964 (993)
Q Consensus 938 l~~~~~~~~~~~~~i~~~y~~~~g~~~ 964 (993)
|.++. +..+++.++++ +.|+.+
T Consensus 325 l~~~~----~~~~~l~~~l~-~~g~~~ 346 (365)
T 3k17_A 325 FSKTK----ELAEKLVNEWE-KLGIKH 346 (365)
T ss_dssp EESSH----HHHHHHHHHHH-HTTCEE
T ss_pred EECCH----HHHHHHHHHHH-HCCCEE
Confidence 87653 23567777776 345543
No 9
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=100.00 E-value=2.6e-41 Score=381.41 Aligned_cols=296 Identities=16% Similarity=0.070 Sum_probs=220.4
Q ss_pred eEEEEcCccccccccccccc-CCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 001939 497 IFVARAPGRLDVMGGIADYS-GSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (993)
Q Consensus 497 ~~~~~APGRv~L~GeH~dy~-gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (993)
|+.++|||||+|+|||++++ |+++|++||++++++.++++++.++ .+...+
T Consensus 1 mi~v~apGKviL~GEhaVv~~G~~Ala~ai~~~~~v~i~~~~~~~i-----------------------~~~~~~----- 52 (335)
T 3gon_A 1 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRI-----------------------YSDMFD----- 52 (335)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCEE-----------------------EETTSS-----
T ss_pred CEEEEECCEEEEEeeeeEEcCCCcEEEEEecceEEEEEEECCCCEE-----------------------EEeCCC-----
Confidence 46789999999999999987 9999999999999999999876432 221100
Q ss_pred CceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCC---CCCchHHHH
Q 001939 576 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEG---KGVSSSASV 652 (993)
Q Consensus 576 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g---~GLgSSAA~ 652 (993)
+.+++.. .....-|.+++..+.. ++++.+..+ +|+++.|.|++|.+ +|||||||+
T Consensus 53 --~~~~~~~------------------~~~~~~~~~~i~~~~~-~l~~~~~~~-~~~~i~I~s~lp~~~~~~GLgSSaa~ 110 (335)
T 3gon_A 53 --FAVDLRP------------------NPDYSLIQETIALMGD-FLAVRGQNL-RPFSLAIYGKMEREGKKFGLGSSGSV 110 (335)
T ss_dssp --SCBCSSC------------------CTTTHHHHHHHHHHHH-HHHHTTCCC-CCEEEEEECCSEETTEECSSCHHHHH
T ss_pred --cccccCc------------------CCCcHHHHHHHHHHHH-HHHHcCCCC-CceEEEEEecCCcccCCCCcchHHHH
Confidence 1111100 0011123444444333 466777776 79999999999987 599999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCcc------------------
Q 001939 653 EVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAE------------------ 714 (993)
Q Consensus 653 ~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~------------------ 714 (993)
+||++.||+.+++.++++++++++|+.+|+.++|.+|| |||+++++||. +++...+..
T Consensus 111 ~va~~~al~~~~~~~~~~~~l~~la~~~E~~~~g~~sg-~D~a~a~~Gg~---i~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (335)
T 3gon_A 111 VVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSM-GDLACIAAEDL---VLYQSFDRQKVAAWLEEENLATVLERD 186 (335)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCS-HHHHHHHHTSC---EEEECCCHHHHHHHHHHSCHHHHHHSC
T ss_pred HHHHHHhhhhcccccchHHHHHHHHHHHHHHhcCCCCC-CCcceeecCCe---EEEEeCCccccceeecccchhheeccc
Confidence 99999999999999999999999999999999999998 89999999996 333321110
Q ss_pred ---ceeeecCCCCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHh
Q 001939 715 ---LLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAE 791 (993)
Q Consensus 715 ---~~~~v~~p~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 791 (993)
....++.+.++.+++++++.+++|.. ++..+.
T Consensus 187 ~~~~~~~~~~~~~~~l~~~~~~~~~~t~~---------------~v~~v~------------------------------ 221 (335)
T 3gon_A 187 WGFSISQVKPTLECDFLVGWTKEVAVSSH---------------MVQQIK------------------------------ 221 (335)
T ss_dssp CCCEEEECCCCSCCEEEEEECCCCCCHHH---------------HHHHHG------------------------------
T ss_pred ccceeEEcCCccccceEEeecCChhhHHH---------------HHHHHH------------------------------
Confidence 01345556788999999998876531 221110
Q ss_pred hhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCCh
Q 001939 792 ASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASD 871 (993)
Q Consensus 792 ~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~ 871 (993)
. .. ...++...+.+|.++..+|+++
T Consensus 222 -------~------------~~---------------------------------~~~~~~~~~~~~~~~~~aL~~~--- 246 (335)
T 3gon_A 222 -------Q------------NI---------------------------------NQNFLTSSKETVVSLVEALEQG--- 246 (335)
T ss_dssp -------G------------GC---------------------------------CHHHHHHHHHHHHHHHHHHHHT---
T ss_pred -------H------------Hh---------------------------------HHHHHHHHHHHHHHHHHHHHhC---
Confidence 0 00 0112223356788999999986
Q ss_pred hHHHHHHHHHHHhhhhhhhc--CCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHH
Q 001939 872 DQLTSLGELLYQCHYSYSAC--GLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQV 949 (993)
Q Consensus 872 ~~l~~lG~Lm~~sH~slr~~--~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~ 949 (993)
|++.||+||+++|.+|+++ ++++|++|+|+++|++ .|+ ||||||||||||+++|.+++ +..
T Consensus 247 -d~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~-----------~g~-~akltGAG~Ggc~ial~~~~----~~~ 309 (335)
T 3gon_A 247 -KSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQD-----------LQA-VAKSSGAGGGDCGIALSFDA----QST 309 (335)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTT-----------SSE-EEEECTTCSSSEEEEEECSH----HHH
T ss_pred -cHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHh-----------CCc-EEEEccccchheEEEEECCH----HHH
Confidence 9999999999999999994 7899999999999876 564 89999999999999998653 345
Q ss_pred HHHHHHHHhhcCCCC
Q 001939 950 LEIQQRYKDATGYLP 964 (993)
Q Consensus 950 ~~i~~~y~~~~g~~~ 964 (993)
++|.++++ +.|+++
T Consensus 310 ~~i~~~~~-~~Gi~~ 323 (335)
T 3gon_A 310 KTLKNRWA-DLGIEL 323 (335)
T ss_dssp HHHHHHHH-HTTCEE
T ss_pred HHHHHHHH-HCCCcE
Confidence 67777776 347766
No 10
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=100.00 E-value=8.3e-40 Score=368.55 Aligned_cols=295 Identities=17% Similarity=0.121 Sum_probs=222.5
Q ss_pred eEEEEcCcccccccccc-cccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 001939 497 IFVARAPGRLDVMGGIA-DYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (993)
Q Consensus 497 ~~~~~APGRv~L~GeH~-dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (993)
++.++|||||||+|||+ ||+|++||++||++++++.++++++ + +|.+..
T Consensus 3 mi~~~aPgkv~L~GeH~v~y~G~~~l~~Ai~~~~~v~v~~~~~--~---------------------~i~s~~------- 52 (337)
T 2pg9_A 3 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDS--Y---------------------RIYSDM------- 52 (337)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSS--C---------------------EEEETT-------
T ss_pred eEEEeeCceEEEeccceEecCCCEEEEEEccccEEEEEEeCCc--E---------------------EEecCC-------
Confidence 46789999999999999 6779999999999999999998753 2 233321
Q ss_pred CceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHH---hCCCCCCCEEEEEEeCCCCC---CCCchH
Q 001939 576 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTE---LGVRFEDSISMLVSSAVPEG---KGVSSS 649 (993)
Q Consensus 576 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~---~g~~~~~g~~i~i~s~iP~g---~GLgSS 649 (993)
+...++ ..+...| +|+++++..+.+. .|... .|++|.|.|+||.+ +|||||
T Consensus 53 --~~~~~~-------------------~~~~~~~-~~v~~~i~~~~~~~~~~g~~~-~g~~i~i~s~iP~~g~k~GLgSS 109 (337)
T 2pg9_A 53 --FDFAVD-------------------LRPNPDY-SLIQETIALMGDFLAVRGQNL-RPFSLAIYGKMEREGKKFGLGSS 109 (337)
T ss_dssp --SSSCBC-------------------SSCCTTT-HHHHHHHHHHHHHHHHTTCCC-CCEEEEEECCSEETTEECSSCHH
T ss_pred --CCceee-------------------ecCCCCc-HHHHHHHHHHHHHHHhcCCCC-CCEEEEEEccCCCCCCCccccHH
Confidence 100110 0123468 8999998876543 35554 79999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeec------------------
Q 001939 650 ASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQ------------------ 711 (993)
Q Consensus 650 AA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~------------------ 711 (993)
||++||++.|++.+++.++++++++++|+.+|++ .|.++|.|||+++++||......+++.
T Consensus 110 aa~~va~~~al~~~~~~~l~~~~l~~la~~~E~~-~~~~~~~~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (337)
T 2pg9_A 110 GSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLK-RGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERD 188 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH-TTCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-hCCCCCHHHHHHHHhCCEEEEecCChHHhhhhhcccchhhhcccc
Confidence 9999999999999999999999999999999955 666777799999999996432212321
Q ss_pred -CccceeeecCCCCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHH
Q 001939 712 -PAELLGVVEIPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEA 790 (993)
Q Consensus 712 -~~~~~~~v~~p~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 790 (993)
+..+ +++++|.+++|++++|+++++|.. +++.+.
T Consensus 189 ~~~~~-~~l~~~~~~~lvl~~~~~~~~T~~---------------~~~~~~----------------------------- 223 (337)
T 2pg9_A 189 WGFSI-SQVKPTLECDFLVGWTKEVAVSSH---------------MVQQIK----------------------------- 223 (337)
T ss_dssp CCCEE-EECCCCSCCEEEEEECCCCCCHHH---------------HHHHHG-----------------------------
T ss_pred cccce-eeecCCCCceEEEEECCCccchHH---------------HHHHHH-----------------------------
Confidence 1122 566777789999999999988631 111110
Q ss_pred hhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccch-hhHHHHHHHHHHccC
Q 001939 791 EASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYE-NFRVKAFKALLTAAA 869 (993)
Q Consensus 791 ~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E-~~Rv~~~~~al~~~~ 869 (993)
..++ .+.+.+ +.++.+++++|.++
T Consensus 224 -----~~~~-------------------------------------------------~~~~~~~~~~~~~~~~aL~~~- 248 (337)
T 2pg9_A 224 -----QNIN-------------------------------------------------QNFLTSSKETVVSLVEALEQG- 248 (337)
T ss_dssp -----GGCC-------------------------------------------------HHHHHHHHHHHHHHHHHHHHT-
T ss_pred -----HHHH-------------------------------------------------HHHHHHHHHHHHHHHHHHHcC-
Confidence 0000 001111 34677899999886
Q ss_pred ChhHHHHHHHHHHHhhhhhhhcC--CCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHH
Q 001939 870 SDDQLTSLGELLYQCHYSYSACG--LGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSE 947 (993)
Q Consensus 870 ~~~~l~~lG~Lm~~sH~slr~~~--vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~ 947 (993)
|++.||++|+++|+++++++ +++|++|+|++.+++ .|++ +||||||||||+++|.++. +
T Consensus 249 ---d~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~-----------~Ga~-ak~sGaGgGg~vial~~~~----~ 309 (337)
T 2pg9_A 249 ---KSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQD-----------LQAV-AKSSGAGGGDCGIALSFDA----Q 309 (337)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTT-----------SSEE-EEECTTCSSSEEEEEECSH----H
T ss_pred ---CHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHH-----------CCCE-EEEeCCCCccEEEEEECCH----H
Confidence 99999999999999999986 999999999998876 6889 9999999999999887653 2
Q ss_pred HHHHHHHHHHhhcCCCCc
Q 001939 948 QVLEIQQRYKDATGYLPL 965 (993)
Q Consensus 948 ~~~~i~~~y~~~~g~~~~ 965 (993)
..+++.++++ +.|+.+.
T Consensus 310 ~~~~~~~~l~-~~g~~~~ 326 (337)
T 2pg9_A 310 STKTLKNRWA-DLGIELL 326 (337)
T ss_dssp HHHHHHHHHH-HTTCEEE
T ss_pred HHHHHHHHHH-HCCCEEE
Confidence 3456666665 4577654
No 11
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=100.00 E-value=5.1e-36 Score=335.53 Aligned_cols=305 Identities=20% Similarity=0.275 Sum_probs=217.4
Q ss_pred cCCCCCCceEEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecc
Q 001939 489 GLFNWEEEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYG 568 (993)
Q Consensus 489 ~~f~~~~~~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~ 568 (993)
++....+.++.++|||||||+|||+||+||.+|++||++++++.+++.++ + +|.+..
T Consensus 13 ~~~~~~~~mi~~~APgkinL~GeH~~~~Gg~~l~~aI~~~~~v~v~~~~~--i---------------------~i~~~~ 69 (321)
T 4hac_A 13 GLVPRGSHMVSCSAPGKIYLFGEHAVVYGETAIACAVELRTRVRAELNDS--I---------------------TIQSQI 69 (321)
T ss_dssp SCCCCSCCCEEEEEEEEEEEECTTTGGGTCCEEEEEEEEEEEEEEEECSS--E---------------------EEEETT
T ss_pred CCcCCCCCEEEEEeeEEEEEEccCEEEcCCEEEEEEeccCEEEEEEECCC--E---------------------EEEECC
Confidence 44444567789999999999999999999999999999999999997542 2 232210
Q ss_pred cccCCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCch
Q 001939 569 SELSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSS 648 (993)
Q Consensus 569 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgS 648 (993)
+. ..+ . .....|.+|+..+ +++++ .. .|++|.+.++||.++||||
T Consensus 70 ---------~~---~~~-------~----------~~~~~~~~~~~~~----l~~~~-~~-~g~~i~i~~~iP~g~GLGS 114 (321)
T 4hac_A 70 ---------GR---TGL-------D----------FEKHPYVSAVIEK----MRKSI-PI-NGVFLTVDSDIPVGSGLGS 114 (321)
T ss_dssp ---------EE---ESS-------C----------TTTSHHHHHHHHH----HTTTS-CC-CCEEEEEEECCCSCTTCCH
T ss_pred ---------CC---ccc-------c----------cchhHHHHHHHHH----HHHhC-CC-CCEEEEEECCCCCCCCccH
Confidence 00 000 0 0112455554433 33445 33 6999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEE
Q 001939 649 SASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFW 728 (993)
Q Consensus 649 SAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~l 728 (993)
|||++||++.|++.+++.++++++|+++|+++|+.++|.++ .+|++++++||. +++ . .. +.+++| +++++
T Consensus 115 Ssa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~-~~D~~~~~~Gg~---~~~-~-~~---~~l~~p-~~~~v 184 (321)
T 4hac_A 115 SAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGAAS-PTDTYVSTFGGV---VTI-P-ER---RKLKTP-DCGIV 184 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSCCC-SHHHHHHHHCSE---EEE-T-TC---CEECCC-CCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc-HHHHHHHHcCCe---EEE-c-CC---ceeccC-CCEEE
Confidence 99999999999999999999999999999999999999954 589999999993 444 2 11 234456 89999
Q ss_pred EEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHH
Q 001939 729 GIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEAL 808 (993)
Q Consensus 729 l~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~ 808 (993)
+++++++++|.. +.+.+ + .+++..++.+...
T Consensus 185 lv~p~~~~sT~~---------------~~~~~-------------------------~---------~l~~~~~~~~~~~ 215 (321)
T 4hac_A 185 IGDTGVFSSTKE---------------LVANV-------------------------R---------QLRESYPDLIEPL 215 (321)
T ss_dssp EEECCCCCCHHH---------------HHHHH-------------------------H---------HHHHHCHHHHHHH
T ss_pred EEECCCCccHHH---------------HHHHH-------------------------H---------HHHhcCHHHHHHH
Confidence 999999988742 11111 0 1111111111110
Q ss_pred HhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhh
Q 001939 809 YAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSY 888 (993)
Q Consensus 809 ~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~sl 888 (993)
.+.+. ..+.++..+|.++ |++.||++|+++|..+
T Consensus 216 ----------------------------------------~~~~~--~~~~~~~~al~~~----d~~~lg~~~~~~~~~~ 249 (321)
T 4hac_A 216 ----------------------------------------MTSIG--KISRIGEQLVLSG----DYASIGRLMNVNQGLL 249 (321)
T ss_dssp ----------------------------------------HHHHH--HHHHHHHHHHHHT----CHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------HHHHH--HHHHHHHHHHHhC----CHHHHHHHHHHHHHHH
Confidence 00011 1245677888875 9999999999999888
Q ss_pred hhcCCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCcEEe
Q 001939 889 SACGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIE 968 (993)
Q Consensus 889 r~~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~ 968 (993)
+++++++|++|++++.+++ .|++|+||||+|+|||++++.+ ...+ +++.+..++ .| ..+|.
T Consensus 250 ~~~~v~~p~l~~l~~~a~~-----------~Ga~ga~~SGaG~GG~v~al~~-~~~a----~~~~~~l~~-~g--~~v~~ 310 (321)
T 4hac_A 250 DALGVNILELSQLIYSARA-----------AGAFGAKITGAGGGGCMVALTA-PEKC----NQVAEAVAG-AG--GKVTI 310 (321)
T ss_dssp HHHTCCCHHHHHHHHHHHH-----------TTCSEEEECSSCSSSEEEEEEC-STTH----HHHHHHHHH-TT--CEEEE
T ss_pred hhcCCCCHHHHHHHHHHHH-----------CCCCEEEECccCCCCEEEEEcC-HHHH----HHHHHHHHh-CC--CeEEE
Confidence 7799999999999999988 6899999999999999997763 2222 334444432 23 34665
Q ss_pred e--cCCCCc
Q 001939 969 G--SSPGAG 975 (993)
Q Consensus 969 ~--~~~G~~ 975 (993)
. ...|++
T Consensus 311 ~~~~~~G~~ 319 (321)
T 4hac_A 311 TKPTEQGLK 319 (321)
T ss_dssp ECBCSCSSE
T ss_pred EEECCCcee
Confidence 4 566764
No 12
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=100.00 E-value=6.7e-37 Score=341.49 Aligned_cols=292 Identities=17% Similarity=0.267 Sum_probs=216.9
Q ss_pred ceEEEEcCcccccccccccccCCeeeccccccc-eEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCC
Q 001939 496 EIFVARAPGRLDVMGGIADYSGSLVLQMPIREA-CHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNR 574 (993)
Q Consensus 496 ~~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~ 574 (993)
+...++|||||||+|||+||+|+.+|+++|+.. +++.+++++++. .+.+.+..
T Consensus 5 ~~~~~~APgkinL~Ge~~d~~g~~~l~~ai~~~~~~v~v~~~~~~~--------------------~i~~~~~~------ 58 (308)
T 2x7i_A 5 RKGYGESTGKIILIGEHAVTFGEPAIAVPFNAGKIKVLIEALESGN--------------------YSSIKSDV------ 58 (308)
T ss_dssp CEEEEEEEEEEEEEEBTTCCTTSCEEEEEEEEEEEEEEEEECCTTC--------------------CCEEEEEE------
T ss_pred cceEEEEeeEEEEEecCeeecCCeEEEEEEcCCEEEEEEEECCCCC--------------------eeEEEecC------
Confidence 346789999999999999999999999999985 889999876532 02222110
Q ss_pred CCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHH
Q 001939 575 GPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEV 654 (993)
Q Consensus 575 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~V 654 (993)
++.++ .....|.||+++++..+.+ .. .|++|.+.++||.++|||||||+++
T Consensus 59 ---~~~~~---------------------~~~~~~~~~v~~~~~~~~~----~~-~g~~i~i~~~iP~g~GLGSSsa~~~ 109 (308)
T 2x7i_A 59 ---YDGML---------------------YDAPDHLKSLVNRFVELNN----IT-EPLAVTIQTNLPPSRGLGSSAAVAV 109 (308)
T ss_dssp ---CSSCC---------------------CCTTSCHHHHHHHHHHHTT----CC-SCEEEEEEECCCTTSSSCHHHHHHH
T ss_pred ---CCCCh---------------------hhhhHHHHHHHHHHHHHHh----hC-CCeEEEEeccCCCCCCccHHHHHHH
Confidence 10011 0113689999998775432 23 4899999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCCC
Q 001939 655 ASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGI 734 (993)
Q Consensus 655 a~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv 734 (993)
|++.|++.+++.++++++|+++|+++|+.++|.|||. |+.++.+||. ++++ +... .++++++.++.++++++++
T Consensus 110 a~~~al~~l~~~~l~~~~l~~la~~~E~~~~g~~sG~-d~~~~~~g~~---~~~~-~g~~-~~~~~~~~~~~~vi~~~~~ 183 (308)
T 2x7i_A 110 AFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSGI-DTQTIVSGKP---VWFQ-KGHA-ETLKTLSLDGYMVVIDTGV 183 (308)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSSCCHH-HHHHHHHTSC---EEEE-TTEE-EECSCCCBSSEEEEEECCC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchH-HHHHhhCCce---EEEE-cCCC-ceEeccCCCceEEEEECcC
Confidence 9999999999999999999999999999999999996 9999999884 4555 3322 2566666688999999999
Q ss_pred ccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCC
Q 001939 735 RHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIP 814 (993)
Q Consensus 735 ~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp 814 (993)
+++|.. .|+. +.. .....+.
T Consensus 184 ~~sT~~-~~~~-----------l~~-------------------------------------~~~~~~~----------- 203 (308)
T 2x7i_A 184 KGSTRQ-AVHD-----------VHK-------------------------------------LCEDPQY----------- 203 (308)
T ss_dssp --CCSC-CCC--------------------------------------------------------CCH-----------
T ss_pred CCCHHH-HHHH-----------HHH-------------------------------------HHhcCch-----------
Confidence 988742 1110 000 0000000
Q ss_pred ccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhhhhcCCC
Q 001939 815 ESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSACGLG 894 (993)
Q Consensus 815 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~slr~~~vs 894 (993)
+++ +.|+ ..++.++..+|+++ |++.||++|+++|.++++++++
T Consensus 204 -----------------------------~~~-~~~~---~~~~~~~~~al~~~----d~~~l~~~~~~~~~~~~~~~~~ 246 (308)
T 2x7i_A 204 -----------------------------MSH-VKHI---GKLVLRASDVIEHH----KFEALADIFNECHADLKALTVS 246 (308)
T ss_dssp -----------------------------HHH-HHHH---HHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHSCC
T ss_pred -----------------------------HHH-HHHH---HHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhCCC
Confidence 000 1221 23677888899885 9999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHH
Q 001939 895 SDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRY 956 (993)
Q Consensus 895 ~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y 956 (993)
+|++|++++.+++ .|++|+||||+|+|||++++.++...++++.+++.+.|
T Consensus 247 ~p~l~~l~~~~~~-----------~Ga~ga~~sGaG~GG~v~~l~~~~~~~~~~~~~l~~~~ 297 (308)
T 2x7i_A 247 HDKIEQLMKIGKE-----------NGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEKAG 297 (308)
T ss_dssp CHHHHHHHHHHHH-----------TTCSEEEESBTTTCSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH-----------CCCcEEEeeccCCCcEEEEEeCChhHHHHHHHHHHhCC
Confidence 9999999999987 68999999999999999988765222345555555444
No 13
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=100.00 E-value=4.4e-36 Score=338.50 Aligned_cols=302 Identities=18% Similarity=0.221 Sum_probs=222.9
Q ss_pred CceEEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCC
Q 001939 495 EEIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNR 574 (993)
Q Consensus 495 ~~~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~ 574 (993)
++.+.++|||||||+|||+||+|+.++.+||++++++.++++++. +.+.+.+..
T Consensus 11 ~~~~~~~ApgKi~L~Geh~~~~G~~~l~~ai~~~~~v~v~~~~~~--------------------~~~~~~~~~------ 64 (332)
T 2hfs_A 11 KTTGKNIGYGKVILFGEHFVVHGAEAIVAGISEYTECRLEINPGV--------------------PGLQVDDQR------ 64 (332)
T ss_dssp BCCSCCEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEETTC--------------------CSEEEEECC------
T ss_pred CCeEEEEEeEEEEEecCCEEEcCCeEEEEEecccEEEEEEEcCCC--------------------CCeEEEecC------
Confidence 455678999999999999999999999999999999999986421 012222110
Q ss_pred CCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCC-CCCEEEEEEeCCCCCCCCchHHHHH
Q 001939 575 GPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRF-EDSISMLVSSAVPEGKGVSSSASVE 653 (993)
Q Consensus 575 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~-~~g~~i~i~s~iP~g~GLgSSAA~~ 653 (993)
..++ ... ....|.+..++..+++..+... ..|++|.+.++||.++|||||||++
T Consensus 65 ---~~~~----------~~~------------~~~~~~~~~a~~~~~~~~g~~~~~~g~~i~i~~~iP~g~GLGSSsA~~ 119 (332)
T 2hfs_A 65 ---PAIP----------GYI------------AQKRDEQIKAHQLVLDHLKVDLSGDGLKMFIGGPLVPSSGIGASASDV 119 (332)
T ss_dssp ---CCCT----------THH------------HHHHHHHHHHHHHHHHHTTBCCSSSEEEEEEECSCCCCTTSCHHHHHH
T ss_pred ---cccc----------ccc------------cccchhHHHHHHHHHHHcCCccCCCceEEEEEcCCCCCCCccHHHHHH
Confidence 0000 000 0234666667776777777542 1589999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCcc-ceeeecCCCCeEEEEEeC
Q 001939 654 VASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAE-LLGVVEIPSHIRFWGIDS 732 (993)
Q Consensus 654 Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~-~~~~v~~p~~~~~ll~dS 732 (993)
||++.|++.+++.++++++|+++|+++|+.++|.|+|. |+.++++||. +++.....+ ...++++++++.++++++
T Consensus 120 ~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~G~~~G~-D~~~~~~Gg~---~~~~~~~g~~~~~~~~~~~~~~~vl~~~ 195 (332)
T 2hfs_A 120 VAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGA-DNTAATYGGL---ILYRRQNGKSVFKPIAFQQRLYLVVVGT 195 (332)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSSSCCCSH-HHHHHHHCEE---EEEEECSSSEEEEEECCCSCEEEEEEEC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcH-hHHHHhcCCe---EEEecCCCCcceeeecCCCCcEEEEEEC
Confidence 99999999999999999999999999999999999997 9999999994 444332222 235677777899999999
Q ss_pred CCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhc
Q 001939 733 GIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKN 812 (993)
Q Consensus 733 gv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~ 812 (993)
+++++|.. ++.++ ..+++..++.+..
T Consensus 196 ~~~~~T~~---------------~~~~~----------------------------------~~~~~~~~~~~~~----- 221 (332)
T 2hfs_A 196 GINASTAK---------------VVNDV----------------------------------HKMKQQQPVQFKR----- 221 (332)
T ss_dssp SCCCCHHH---------------HHHHH----------------------------------HHHHHHCHHHHHH-----
T ss_pred CCCccHHH---------------HHHHH----------------------------------HHHHHhCHHHHHH-----
Confidence 99888631 11111 0111111111111
Q ss_pred CCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhhhhcC
Q 001939 813 IPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSACG 892 (993)
Q Consensus 813 lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~slr~~~ 892 (993)
+++++. .++.++..+|+++ |++.||++|+++|..++.++
T Consensus 222 -------------------------------~~~~~~------~~~~~~~~al~~~----d~~~l~~~~~~~~~~l~~~~ 260 (332)
T 2hfs_A 222 -------------------------------LYDNYT------HIVSQAREALQKG----DLQRLGQLMNANHDLCRQID 260 (332)
T ss_dssp -------------------------------HHHHHH------HHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------------------HHHHHH------HHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHcC
Confidence 011111 2356777888885 89999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHH
Q 001939 893 LGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYK 957 (993)
Q Consensus 893 vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~ 957 (993)
+++|++|++++.+++ .|++|+||||+|+|||++++.+++..++++.+++.+.|.
T Consensus 261 ~~~p~l~~l~~~~~~-----------~Ga~ga~~sGaG~gg~v~~l~~~~~~a~~~~~~l~~~~~ 314 (332)
T 2hfs_A 261 VSCRELESIVQTCRT-----------YGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCP 314 (332)
T ss_dssp CCCHHHHHHHHHHHH-----------TTCSEEEEESSCSSSEEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHH-----------cCCceEEeccCCCCcEEEEEecCcccHHHHHHHHHHHHh
Confidence 999999999999987 689999999999999999887654323466677766665
No 14
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=100.00 E-value=3.8e-34 Score=320.54 Aligned_cols=282 Identities=16% Similarity=0.239 Sum_probs=202.6
Q ss_pred ceEEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 001939 496 EIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (993)
Q Consensus 496 ~~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (993)
+.+.++|||||||+|||+||+|+.+|++||++++++.++++++.. +++.+.+. +
T Consensus 4 ~~~~~~APgki~L~geh~~~~G~~~l~~ai~~~~~v~v~~~~~~~---------------------i~i~~~~~---~-- 57 (317)
T 1kkh_A 4 SHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDE---------------------IILNLNDL---N-- 57 (317)
T ss_dssp CCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSE---------------------EEEEETTT---T--
T ss_pred CCEEEEccEEEEEEcCCeeEcCCEEEEEEecCeEEEEEEECCCCe---------------------EEEEeCCC---C--
Confidence 346789999999999999999999999999999999999876543 33332110 0
Q ss_pred CceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHH---HhCCCCCCCEEEEEEeCCCCCCCCchHHHH
Q 001939 576 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMT---ELGVRFEDSISMLVSSAVPEGKGVSSSASV 652 (993)
Q Consensus 576 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~---~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~ 652 (993)
...++++++.. ......| +++..++..+.. .++.....|++|.+.++||.++|||||||+
T Consensus 58 ~~~~~~~~~~~----------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~~~iP~~~GLGsSsa~ 120 (317)
T 1kkh_A 58 KSLGLNLNEIK----------------NINPNNF-GDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASI 120 (317)
T ss_dssp EEEEEETTTGG----------------GCCGGGS-GGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHH
T ss_pred CceEEEeccCC----------------ccCcccc-hHHHHHHHHHHHHHHhhcccCCCCeEEEEecCCCCCCCchHHHHH
Confidence 01122221100 0112356 555555544322 234322269999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCC--C----CeE
Q 001939 653 EVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP--S----HIR 726 (993)
Q Consensus 653 ~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p--~----~~~ 726 (993)
++|++.|++.++|.++++++|+++|+++|+.+||.+|| +|+.++++||. +++ ++... ++++++ + ++.
T Consensus 121 ~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~g~~sg-~D~~~~~~Gg~---~~~--~~~~~-~~~~~~~~~~l~~~~~ 193 (317)
T 1kkh_A 121 TIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASI-TDTSTITYKGI---LEI--KNNKF-RKIKGEFEEFLKNCKF 193 (317)
T ss_dssp HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSSSCCS-HHHHHHHHCSE---EEE--SSSCE-EEECHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCch-HHHHHHHhCCe---EEE--cCCCc-eEecCCcccccccCcE
Confidence 99999999999999999999999999999999999988 79999999984 333 33333 455432 1 258
Q ss_pred EEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHH
Q 001939 727 FWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFE 806 (993)
Q Consensus 727 ~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~ 806 (993)
+++++++++++|.. +.+.+. .+++. ++
T Consensus 194 ~vl~~~~~~~~T~~---------------~~~~~~----------------------------------~~~~~-~~--- 220 (317)
T 1kkh_A 194 LIVYAEKRKKKTAE---------------LVNEVA----------------------------------KIENK-DE--- 220 (317)
T ss_dssp EEEEEECCCSCHHH---------------HHHHHH----------------------------------TCTTH-HH---
T ss_pred EEEEECCCcCcHHH---------------HHHHHH----------------------------------Hhhcc-HH---
Confidence 99999999887641 111110 00000 00
Q ss_pred HHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhh
Q 001939 807 ALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHY 886 (993)
Q Consensus 807 ~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~ 886 (993)
.+.+..+ ...+++..+ |++.||++|+++|.
T Consensus 221 --------------------------------------------~~~~~~~--~~~~a~~~~----d~~~l~~~~~~~~~ 250 (317)
T 1kkh_A 221 --------------------------------------------IFKEIDK--VIDEALKIK----NKEDFGKLMTKNHE 250 (317)
T ss_dssp --------------------------------------------HHHHHHH--HHHHHHHCC----SHHHHHHHHHHHHH
T ss_pred --------------------------------------------HHHHHHH--HHHHHHHcC----CHHHHHHHHHHHHH
Confidence 0011111 133456664 89999999999999
Q ss_pred hhhhcCCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCC
Q 001939 887 SYSACGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNS 942 (993)
Q Consensus 887 slr~~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~ 942 (993)
+++++++++|++|++++.+++ .| +|+||||+|+|||++++.+++
T Consensus 251 ~~~~~~~~~p~l~~~~~~~~~-----------~G-~ga~~sGaG~GG~v~~l~~~~ 294 (317)
T 1kkh_A 251 LLKKLNISTPKLDRIVDIGNR-----------FG-FGAKLTGAGGGGCVIILVNEE 294 (317)
T ss_dssp HHHTTTCCCHHHHHHHHHHHH-----------HS-SEEEECSSSSSEEEEEECCGG
T ss_pred HHHhcCCCCHHHHHHHHHHHh-----------cC-ceeEEeecCCCCEEEEEechh
Confidence 999999999999999999987 58 999999999999999887643
No 15
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=100.00 E-value=5.9e-34 Score=315.11 Aligned_cols=282 Identities=21% Similarity=0.265 Sum_probs=202.9
Q ss_pred eEEEEcCcccccccccccccCCeeecccc-ccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 001939 497 IFVARAPGRLDVMGGIADYSGSLVLQMPI-REACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (993)
Q Consensus 497 ~~~~~APGRv~L~GeH~dy~gg~vl~~AI-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (993)
++.++|||||||+|||+||+|+.+|.+|| ++++++.++++++ .+++
T Consensus 5 ~~~~~aP~ki~L~Ge~~~~~g~~~l~~ai~~~~~~v~v~~~~~-~~~i-------------------------------- 51 (292)
T 2oi2_A 5 VGVGQAHSKIILIGEHAVVYGYPAISLPLLEVEVTCKVVPAES-PWRL-------------------------------- 51 (292)
T ss_dssp CEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEECSS-CCCC--------------------------------
T ss_pred cEEEEeeeEEEEEeCCeeecCCcEEEEEEcCcEEEEEEEECCC-ceEE--------------------------------
Confidence 46789999999999999999999999999 9999999998632 1111
Q ss_pred CceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHH
Q 001939 576 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVA 655 (993)
Q Consensus 576 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va 655 (993)
... ...|.+..+...+ .+... .|++|.+.++||.++|||||||+++|
T Consensus 52 -----~~~------------------------~~~~~~~~~~~~~---~~~~~-~g~~i~i~~~iP~g~GLGSSsa~~~a 98 (292)
T 2oi2_A 52 -----YEE------------------------DTLSMAVYASLEY---LNITE-ACIRCEIDSAIPEKRGMGSSAAISIA 98 (292)
T ss_dssp -----CCC------------------------SHHHHHHHHHHHH---HTCSC-CCEEEEEC----CCGGGSCHHHHHHH
T ss_pred -----Eec------------------------CccchhhhhhHHH---hcccC-CceEEEEEecCCCCCCchHHHHHHHH
Confidence 000 0123332222221 25433 69999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCC-CCeEEEEEeCCC
Q 001939 656 SMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIP-SHIRFWGIDSGI 734 (993)
Q Consensus 656 ~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p-~~~~~ll~dSgv 734 (993)
++.|++.++|.++++++|+++|.++|+..+|+|||+ |++++++||. +++ ++... .++++++ +.+ ++++++++
T Consensus 99 ~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~p~g~-d~~~~~~gg~---~~~-~~~~~-~~~~~~~~~~~-~~i~~~~~ 171 (292)
T 2oi2_A 99 AIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSGL-DAKTCLSDQP---IRF-IKNVG-FTELEMDLSAY-LVIADTGV 171 (292)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCCCCSH-HHHHHTCSSC---EEE-ETTTE-EEECCCCCSCE-EEEEECSS
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCch-hHHHHhcCce---EEE-EcCCC-ceeecCCCCCE-EEEEECCC
Confidence 999999999999999999999999999888999995 9999999985 334 33322 2555543 345 89999998
Q ss_pred ccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCC
Q 001939 735 RHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIP 814 (993)
Q Consensus 735 ~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp 814 (993)
+++|.. +.+.+ ++..+.
T Consensus 172 ~~sT~~---------------~~~~l-------------------------------------~~~~~~----------- 188 (292)
T 2oi2_A 172 YGHTRE---------------AIQVV-------------------------------------QNKGKD----------- 188 (292)
T ss_dssp CCCHHH---------------HHHHH-------------------------------------HHTGGG-----------
T ss_pred CCcHHH---------------HHHHH-------------------------------------HHHHhh-----------
Confidence 887642 01000 000000
Q ss_pred ccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhhhhcCCC
Q 001939 815 ESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSACGLG 894 (993)
Q Consensus 815 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~slr~~~vs 894 (993)
.++..|.+.+ .+.++..+|.++ |++.||++|+++|.++++++++
T Consensus 189 ------------------------------~~~~~~~~~~--~~~~~~~al~~~----d~~~l~~~~~~~~~~l~~~~~~ 232 (292)
T 2oi2_A 189 ------------------------------ALPFLHALGE--LTQQAEIAISQK----DAEGLGQILSQAHLHLKEIGVS 232 (292)
T ss_dssp ------------------------------GHHHHHHHHH--HHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCC
T ss_pred ------------------------------hHHHHHHHHH--HHHHHHHHHHcC----CHHHHHHHHHHHHHHHHhcCCC
Confidence 0001111211 255677888885 8999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcC
Q 001939 895 SDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATG 961 (993)
Q Consensus 895 ~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g 961 (993)
+|++|++++.+++ .|++|+||||+|+|||++++.++....+++.+++++.|.+.+|
T Consensus 233 ~p~l~~l~~~~~~-----------~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~l~~~~~~~~~ 288 (292)
T 2oi2_A 233 SLEADSLVETALS-----------HGALGAKMSGGGLGGCIIALVTNLTHAQELAERLEEKGAVQTW 288 (292)
T ss_dssp CHHHHHHHHHHHT-----------TTCSEEEEESSSSSSEEEEEESCHHHHHHHHHHHHHHTCSEEE
T ss_pred cHHHHHHHHHHHh-----------CCCceeeeccCCCCcEEEEEecCchHHHHHHHHHHhcCcceec
Confidence 9999999999986 6899999999999999998876532234566666655543333
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.96 E-value=5.7e-29 Score=275.76 Aligned_cols=277 Identities=14% Similarity=0.147 Sum_probs=205.0
Q ss_pred EEEEcCcccccccccccccCCeeeccccccc-eEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCC
Q 001939 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREA-CHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGP 576 (993)
Q Consensus 498 ~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~ 576 (993)
+.++||+|++.+|+|.| ++++++|.+ .++.+.+++++. +.+..
T Consensus 3 i~v~aPaki~nlG~g~~-----vl~~a~d~~~~~~~~~~~~~~~---------------------~~i~~---------- 46 (296)
T 1h72_C 3 VRVKAPCTSANLGVGFD-----VFGLCLKEPYDVIEVEAIDDKE---------------------IIIEV---------- 46 (296)
T ss_dssp EEEEEEEEEECTGGGTT-----TEEEEEEEEEEEEEEEEESSSS---------------------EEEEE----------
T ss_pred EEEEEEeehhccccchh-----hhHHhcccccEEEEEEecCCCe---------------------EEEEE----------
Confidence 57899999999998766 889999985 445565554321 22211
Q ss_pred ceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHH
Q 001939 577 TFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVAS 656 (993)
Q Consensus 577 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~ 656 (993)
+-.+ .+...|.||++.++..+.+..|.+ .|++|.+.++||.|+|||||||.++|+
T Consensus 47 ----~~~~-------------------~~~~~~~n~v~~a~~~~~~~~g~~--~g~~i~i~~~iP~g~GLGSSsa~~~a~ 101 (296)
T 1h72_C 47 ----DDKN-------------------IPTDPDKNVAGIVAKKMIDDFNIG--KGVKITIKKGVKAGSGLGSSAASSAGT 101 (296)
T ss_dssp ----SCTT-------------------SCCCTTTSHHHHHHHHHHHHTTCC--CEEEEEEECSSCTTSSSCHHHHHHHHH
T ss_pred ----cCCc-------------------CCCCCccCcHHHHHHHHHHHhCCC--CCeEEEEEcCCCCCCCccHHHHHHHHH
Confidence 0000 112238999999998877767764 699999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeCCCcc
Q 001939 657 MSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDSGIRH 736 (993)
Q Consensus 657 ~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dSgv~~ 736 (993)
+.|++.++|.++++++|+++|.++|..++|.|++ .|..++++||. +++.++.+... .++++|+++.+++++++++.
T Consensus 102 ~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~-ddv~~~~~gg~--~~~~~~~~~~~-~~~~~~~~~~~vl~~p~~~~ 177 (296)
T 1h72_C 102 AYAINELFKLNLDKLKLVDYASYGELASSGAKHA-DNVAPAIFGGF--TMVTNYEPLEV-LHIPIDFKLDILIAIPNISI 177 (296)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCCC-TTHHHHHHCSE--EEEEETTTTEE-EEECCCSCCCEEEECCSSCC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHhcCcccCCCCc-cchHHHHhCCE--EEEEeCCceEE-EEEcCCCCeEEEEEeCCCCc
Confidence 9999999999999999999999999999999986 24455899995 33333333223 67777778999999998765
Q ss_pred ccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCcc
Q 001939 737 SVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPES 816 (993)
Q Consensus 737 ~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~ 816 (993)
+|.. +. +.+++.
T Consensus 178 ~T~~---------------~~-----------------------------------------------------~~l~~~ 189 (296)
T 1h72_C 178 NTKE---------------AR-----------------------------------------------------EILPKA 189 (296)
T ss_dssp CHHH---------------HH-----------------------------------------------------HTSCSC
T ss_pred cHHH---------------HH-----------------------------------------------------HhccCc
Confidence 4421 00 012110
Q ss_pred chhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHH--HHhhhhhhhcCCC
Q 001939 817 IVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELL--YQCHYSYSACGLG 894 (993)
Q Consensus 817 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm--~~sH~slr~~~vs 894 (993)
.+..|.+.++.|+..+..+|.++ |++.||++| |+.|++++. ++
T Consensus 190 -----------------------------~~~~~~~~~~~~~~~~~~al~~~----d~~~~~~~~~~n~~h~~~~~--~~ 234 (296)
T 1h72_C 190 -----------------------------VGLKDLVNNVGKACGMVYALYNK----DKSLFGRYMMSDKVIEPVRG--KL 234 (296)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHTTCCSSHHHHH--TT
T ss_pred -----------------------------CcHHHHHHHHHHHHHHHHHHHcC----CHHHHHHHHhcCcchhhhhh--cc
Confidence 02346677778888899999885 999999999 778999987 48
Q ss_pred CchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHH
Q 001939 895 SDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYK 957 (993)
Q Consensus 895 ~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~ 957 (993)
+|++|++++.+++ . ++|+||||+|+ |++++.+ ....+++.+++++.|.
T Consensus 235 ~p~l~~~~~~~~~-----------~-a~ga~~sGsG~--~v~~l~~-~~~~~~~~~~l~~~~~ 282 (296)
T 1h72_C 235 IPNYFKIKEEVKD-----------K-VYGITISGSGP--SIIAFPK-EEFIDEVENILRDYYE 282 (296)
T ss_dssp STTHHHHHHHHTT-----------T-EEEEEECTTSS--CEEEEEC-GGGHHHHHHHHHHHCS
T ss_pred CccHHHHHHHHHh-----------h-cceEEEecCCh--heEEEec-HHHHHHHHHHHHHhcc
Confidence 9999999998876 5 68999999995 7876653 2233456666665554
No 17
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.95 E-value=5.8e-27 Score=267.38 Aligned_cols=316 Identities=15% Similarity=0.039 Sum_probs=199.2
Q ss_pred CCC-cccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHHHHHhhcc
Q 001939 24 GHG-FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAP 102 (993)
Q Consensus 24 g~G-~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (993)
+.| .||++|+++||++|+++||+|+|++.... +....++..++.+... ...++... .....+...+ .
T Consensus 9 ~GGTgGHi~palala~~L~~~g~~V~~vg~~~g-~e~~~v~~~g~~~~~i-~~~~~~~~--------~~~~~~~~~~--~ 76 (365)
T 3s2u_A 9 AGGTGGHVFPALACAREFQARGYAVHWLGTPRG-IENDLVPKAGLPLHLI-QVSGLRGK--------GLKSLVKAPL--E 76 (365)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTCEEEEEECSSS-THHHHTGGGTCCEEEC-C----------------------CHH--H
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEECCch-HhhchhhhcCCcEEEE-ECCCcCCC--------CHHHHHHHHH--H
Confidence 444 49999999999999999999999986532 2111121111222211 00011100 0000111000 1
Q ss_pred HHHhHHHHHHHHhcCCCcEEEECCCc---hHHHHHHHcCCcEEEEe-cCchhHHHHHHHhhcccchHHHHHHHHhhcccc
Q 001939 103 RKSILKDEVEWLNSIKADLVVSDVVP---VACRAAADAGIRSVCVT-NFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHC 178 (993)
Q Consensus 103 ~~~~l~~~~~~L~~~kPDlVVsD~~~---~a~laA~~~gIP~V~i~-~~~~~~~~~~y~~~~~~~~~~i~~~l~~~y~~~ 178 (993)
....+.+..+++++++||+||++..+ .+.++|+.++||++.+. |..+.. ..++...+ +
T Consensus 77 ~~~~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP~vihe~n~~~G~----------------~nr~l~~~--a 138 (365)
T 3s2u_A 77 LLKSLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQNAVAGT----------------ANRSLAPI--A 138 (365)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCCEEEEECSSSCCH----------------HHHHHGGG--C
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCCEEEEecchhhhh----------------HHHhhccc--c
Confidence 11224455778999999999998633 34678899999999873 422110 01111111 2
Q ss_pred ceee-ecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCCh--hhHH-Hhh--CC--CCcE-
Q 001939 179 EFLI-RLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLK-EEY--LP--SGWK- 249 (993)
Q Consensus 179 d~ll-~~p~~~~~p~~~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~~ll-~~l--~~--~~~~- 249 (993)
+.++ .++...+......+++.|+....... .+...+++++++.|+++.||++.. .+.+ +.+ ++ .++.
T Consensus 139 ~~v~~~~~~~~~~~~k~~~~g~pvr~~~~~~----~~~~~~~~~~~~~ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~v 214 (365)
T 3s2u_A 139 RRVCEAFPDTFPASDKRLTTGNPVRGELFLD----AHARAPLTGRRVNLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAI 214 (365)
T ss_dssp SEEEESSTTSSCC---CEECCCCCCGGGCCC----TTSSCCCTTSCCEEEECCTTTTCSHHHHHHHHHHHTSCTTTCCEE
T ss_pred ceeeecccccccCcCcEEEECCCCchhhccc----hhhhcccCCCCcEEEEECCcCCccccchhhHHHHHhcccccceEE
Confidence 2222 22222111112223344443221111 122345566788999999998874 2222 221 22 2333
Q ss_pred EEEeCCCCCC--------CCCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCC--CCChHHHHHH
Q 001939 250 CLVCGASDSQ--------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY--FNEEPFLRNM 319 (993)
Q Consensus 250 ~vv~G~~~~~--------l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~--~~EQ~~na~~ 319 (993)
+.++|....+ .+.|+.+.+|+++|+++|+.||++||++|.+|++|++++|+|+|++|.+. ..+|..||+.
T Consensus 215 i~~~G~~~~~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDlvI~raG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~ 294 (365)
T 3s2u_A 215 RHQAGRQHAEITAERYRTVAVEADVAPFISDMAAAYAWADLVICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEF 294 (365)
T ss_dssp EEECCTTTHHHHHHHHHHTTCCCEEESCCSCHHHHHHHCSEEEECCCHHHHHHHHHHTCCEEECC-----CCHHHHHHHH
T ss_pred EEecCccccccccceecccccccccccchhhhhhhhccceEEEecCCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHH
Confidence 4467876422 57899999999999999999999999999999999999999999999764 3579999999
Q ss_pred HHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc---------CCCCHHHHHHHHHHHHHcc
Q 001939 320 LEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQETAIG 373 (993)
Q Consensus 320 l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~ga~~~a~~i~~~~~~ 373 (993)
+++.|+|+.+..++++++.|.++|.++++|+..+. ..+++++++++.|++.++|
T Consensus 295 l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~~~~~~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 295 LVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLAKPEATRTVVDACLEVARG 357 (365)
T ss_dssp HHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHHHTCCTTHHHHHHHHHHHHC--
T ss_pred HHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999985432 6899999999999999776
No 18
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.94 E-value=3.2e-26 Score=263.57 Aligned_cols=335 Identities=16% Similarity=0.093 Sum_probs=189.0
Q ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccc---c-CccccCh
Q 001939 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQ---A-DALTVDR 88 (993)
Q Consensus 13 m~~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~---~-~~~~~~~ 88 (993)
-+.|+|||+ +.++.||++|+++||++|+++||+|+|++.... ..... .+..+.+...+..... . .....+.
T Consensus 20 ~~~MRIL~~-~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~~~---~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (400)
T 4amg_A 20 FQSMRALFI-TSPGLSHILPTVPLAQALRALGHEVRYATGGDI---RAVAE-AGLCAVDVSPGVNYAKLFVPDDTDVTDP 94 (400)
T ss_dssp -CCCEEEEE-CCSSHHHHGGGHHHHHHHHHTTCEEEEEECSST---HHHHT-TTCEEEESSTTCCSHHHHSCCC------
T ss_pred CCCCeEEEE-CCCchhHHHHHHHHHHHHHHCCCEEEEEeCcch---hhHHh-cCCeeEecCCchhHhhhccccccccccc
Confidence 445788865 667899999999999999999999999987531 11111 1111111111111100 0 0000000
Q ss_pred H----HHHHHHHHHhhccHHHhHHHHHHHHhcCCCcEEEECC-CchHHHHHHHcCCcEEEEecCch--hHHHHHHHhhcc
Q 001939 89 L----ASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSW--DFIYAEYVMAAG 161 (993)
Q Consensus 89 ~----~~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~~--~~~~~~y~~~~~ 161 (993)
. .....+...+.......+....+.+++++||+||+|. .+++.++|+.+|||.+.+....+ ...+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~--- 171 (400)
T 4amg_A 95 MHSEGLGEGFFAEMFARVSAVAVDGALRTARSWRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSEPGLGALIR--- 171 (400)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCCHHHHHHHH---
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHcCCCceeecccccccccchhhHHH---
Confidence 0 0001111111111222345556788899999999997 77888999999999988632111 011111111
Q ss_pred cchHHHHHHHHhhccc-----cceeee-cCCC--CCCCC---CCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEc
Q 001939 162 HHHRSIVWQIAEDYSH-----CEFLIR-LPGY--CPMPA---FRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNF 230 (993)
Q Consensus 162 ~~~~~i~~~l~~~y~~-----~d~ll~-~p~~--~~~p~---~~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~ 230 (993)
.. .......+.. ....+. .+.. ...+. .+........... .+....++++..+++++|||++
T Consensus 172 ---~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~v~vs~ 244 (400)
T 4amg_A 172 ---RA-MSKDYERHGVTGEPTGSVRLTTTPPSVEALLPEDRRSPGAWPMRYVPYN---GGAVLPDWLPPAAGRRRIAVTL 244 (400)
T ss_dssp ---HH-THHHHHHTTCCCCCSCEEEEECCCHHHHHTSCGGGCCTTCEECCCCCCC---CCEECCTTCSCCTTCCEEEECC
T ss_pred ---HH-HHHHHHHhCCCcccccchhhcccCchhhccCcccccCCcccCccccccc---ccccCcccccccCCCcEEEEeC
Confidence 00 0111111110 000010 0000 00000 0000011100000 0011122455556889999999
Q ss_pred CCCCCh-------hhHHHhhCCCCcEEEEe-CCCCC----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHc
Q 001939 231 GGQPAG-------WKLKEEYLPSGWKCLVC-GASDS----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAY 298 (993)
Q Consensus 231 G~~~~~-------~~ll~~l~~~~~~~vv~-G~~~~----~l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~ 298 (993)
||.... ..++..+...++.+++. +.... .+|+|+++.+|.+ +.++|++||+||||||+||++|++++
T Consensus 245 Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~v~~~~~~p-~~~lL~~~~~~v~h~G~~s~~Eal~~ 323 (400)
T 4amg_A 245 GSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDLALLGELPANVRVVEWIP-LGALLETCDAIIHHGGSGTLLTALAA 323 (400)
T ss_dssp CSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCCCCCCCCCTTEEEECCCC-HHHHHTTCSEEEECCCHHHHHHHHHH
T ss_pred CcccccCccHHHHHHHHHHhhccCceEEEEecCccccccccCCCCEEEEeecC-HHHHhhhhhheeccCCccHHHHHHHh
Confidence 997642 12334444456655544 33322 2789999987765 56999999999999999999999999
Q ss_pred CCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc----------CCCCHHHHHHHHHH
Q 001939 299 KLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE----------GGINGGEVAAHILQ 368 (993)
Q Consensus 299 GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~----------~~~~ga~~~a~~i~ 368 (993)
|||+|++| .+.||+.||+++++.|+|+.++..+.+ .++|+++|+++. |+ ...+|+.++|+.|+
T Consensus 324 GvP~v~~P--~~~dQ~~na~~v~~~G~g~~l~~~~~~----~~al~~lL~d~~-~r~~a~~l~~~~~~~~~~~~~a~~le 396 (400)
T 4amg_A 324 GVPQCVIP--HGSYQDTNRDVLTGLGIGFDAEAGSLG----AEQCRRLLDDAG-LREAALRVRQEMSEMPPPAETAAXLV 396 (400)
T ss_dssp TCCEEECC--C---CHHHHHHHHHHTSEEECCTTTCS----HHHHHHHHHCHH-HHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CCCEEEec--CcccHHHHHHHHHHCCCEEEcCCCCch----HHHHHHHHcCHH-HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999 678999999999999999999988776 456778888763 32 24457788888887
Q ss_pred HH
Q 001939 369 ET 370 (993)
Q Consensus 369 ~~ 370 (993)
++
T Consensus 397 ~l 398 (400)
T 4amg_A 397 AL 398 (400)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 19
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.93 E-value=8.9e-25 Score=254.12 Aligned_cols=347 Identities=16% Similarity=0.140 Sum_probs=210.3
Q ss_pred CCCCCcEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeecc--CCccccCccccC
Q 001939 10 SASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLD--CGAVQADALTVD 87 (993)
Q Consensus 10 ~~~m~~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~--~g~~~~~~~~~~ 87 (993)
|.+|+.++|+++ +.++.||++|+++||++|+++||+|+|++.... ...+...++.+.+...+ .+.........+
T Consensus 7 ~~~m~~~~Il~~-~~~~~GHv~p~l~la~~L~~~Gh~V~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 82 (424)
T 2iya_A 7 SASVTPRHISFF-NIPGHGHVNPSLGIVQELVARGHRVSYAITDEF---AAQVKAAGATPVVYDSILPKESNPEESWPED 82 (424)
T ss_dssp ----CCCEEEEE-CCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGG---HHHHHHHTCEEEECCCCSCCTTCTTCCCCSS
T ss_pred cCCcccceEEEE-eCCCCcccchHHHHHHHHHHCCCeEEEEeCHHH---HHHHHhCCCEEEecCccccccccchhhcchh
Confidence 445776788765 677899999999999999999999999987541 11111011223222111 010000000111
Q ss_pred hHHHHHHHHHHhhccHHHhHHHHHHHHhcCCCcEEEECC-CchHHHHHHHcCCcEEEEecCc-----hhHHHH----HHH
Q 001939 88 RLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFS-----WDFIYA----EYV 157 (993)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~-----~~~~~~----~y~ 157 (993)
....+..+.. ..........+++++.+||+||+|+ .+++..+|+.+|||++.+.... |..... .+.
T Consensus 83 ~~~~~~~~~~----~~~~~~~~l~~~l~~~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 158 (424)
T 2iya_A 83 QESAMGLFLD----EAVRVLPQLEDAYADDRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQDPTA 158 (424)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHTTTSCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTTHHHHSGGGSCCCC
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhccCCCEEEEcCcccHHHHHHHhcCCCEEEEeccccccccccccccccccccc
Confidence 1111111111 1223445567788889999999998 5678889999999999884322 211000 000
Q ss_pred --------hhc-c---------cchHHHHH---HHHhhcc----------ccceeee-cCCCCCCC--CC-CceeecCcc
Q 001939 158 --------MAA-G---------HHHRSIVW---QIAEDYS----------HCEFLIR-LPGYCPMP--AF-RDVIDVPLV 202 (993)
Q Consensus 158 --------~~~-~---------~~~~~i~~---~l~~~y~----------~~d~ll~-~p~~~~~p--~~-~~v~~vp~~ 202 (993)
+.. + ...+.... .....+. ..+..+. .+.....+ .+ +++..+|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~vGp~ 238 (424)
T 2iya_A 159 DRGEEAAAPAGTGDAEEGAEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKGDTVGDNYTFVGPT 238 (424)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEESSCTTTSTTGGGCCTTEEECCCC
T ss_pred ccccccccccccccchhhhccchhHHHHHHHHHHHHHHcCCCCCHHHhccCCCcEEEEcchhhCCCccCCCCCEEEeCCC
Confidence 000 0 00011111 1111110 1222221 22222111 11 245666653
Q ss_pred cccCCcChHHHHHHhCCCCCCcEEEEEcCCCCCh-h----hHHHhhCCCCcEE-EEeCCCCC-----CCCCCeEECCCCC
Q 001939 203 VRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKC-LVCGASDS-----QLPPNFIKLPKDA 271 (993)
Q Consensus 203 ~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-~----~ll~~l~~~~~~~-vv~G~~~~-----~l~~nv~~~~~~~ 271 (993)
... +.+..+++...+++++||+++||.+.. . .+++.+...++.+ +++|.... .+++|+++.+|.+
T Consensus 239 ~~~----~~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~ 314 (424)
T 2iya_A 239 YGD----RSHQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHVVLSVGRFVDPADLGEVPPNVEVHQWVP 314 (424)
T ss_dssp CCC----CGGGCCCCCCCSSCCEEEEECCSSSCCCHHHHHHHHHHHTTCSSEEEEECCTTSCGGGGCSCCTTEEEESSCC
T ss_pred CCC----cccCCCCCccCCCCCEEEEEcCCCCcchHHHHHHHHHHHhcCCcEEEEEECCcCChHHhccCCCCeEEecCCC
Confidence 221 010112222234678999999998742 2 2334454456765 45676432 2688999998887
Q ss_pred CHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCC
Q 001939 272 YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (993)
Q Consensus 272 ~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (993)
.+ ++|++||+||+|+|+||++|++++|+|+|++| .+.||..|++++++.|+|+.+..++++++.|.++|+++++++.
T Consensus 315 ~~-~~l~~~d~~v~~~G~~t~~Ea~~~G~P~i~~p--~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 391 (424)
T 2iya_A 315 QL-DILTKASAFITHAGMGSTMEALSNAVPMVAVP--QIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPG 391 (424)
T ss_dssp HH-HHHTTCSEEEECCCHHHHHHHHHTTCCEEECC--CSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHCHH
T ss_pred HH-HHHhhCCEEEECCchhHHHHHHHcCCCEEEec--CccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcCHH
Confidence 65 89999999999999999999999999999999 4679999999999999999998888899999999999998763
Q ss_pred Ccc---------CCCCHHHHHHHHHHHHH
Q 001939 352 CYE---------GGINGGEVAAHILQETA 371 (993)
Q Consensus 352 ~~~---------~~~~ga~~~a~~i~~~~ 371 (993)
... ...+|+.++++.|++++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 420 (424)
T 2iya_A 392 VAERLAAVRQEIREAGGARAAADILEGIL 420 (424)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 211 35688999999888875
No 20
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.93 E-value=5.1e-25 Score=255.15 Aligned_cols=345 Identities=14% Similarity=0.101 Sum_probs=207.7
Q ss_pred CCCCCcEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCcccc--CccccC
Q 001939 10 SASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQA--DALTVD 87 (993)
Q Consensus 10 ~~~m~~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~--~~~~~~ 87 (993)
+..|. +|+|+ +..|.||++|+++||++|+++||+|+|++... +...+...++.+.....+...... ......
T Consensus 17 ~~~m~--rIl~~-~~~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 90 (415)
T 3rsc_A 17 GRHMA--HLLIV-NVASHGLILPTLTVVTELVRRGHRVSYVTAGG---FAEPVRAAGATVVPYQSEIIDADAAEVFGSDD 90 (415)
T ss_dssp --CCC--EEEEE-CCSCHHHHGGGHHHHHHHHHTTCEEEEEECGG---GHHHHHHTTCEEEECCCSTTTCCHHHHHHSSS
T ss_pred cccCC--EEEEE-eCCCccccccHHHHHHHHHHCCCEEEEEeCHH---HHHHHHhcCCEEEeccccccccccchhhcccc
Confidence 44464 55545 45689999999999999999999999998643 111111112233332111110000 000000
Q ss_pred hHHHHHH-HHHHhhccHHHhHHHHHHHHhcCCCcEEEEC-C-CchHHHHHHHcCCcEEEEecCc-----hhH--HH-HHH
Q 001939 88 RLASLEK-YSETAVAPRKSILKDEVEWLNSIKADLVVSD-V-VPVACRAAADAGIRSVCVTNFS-----WDF--IY-AEY 156 (993)
Q Consensus 88 ~~~~~~~-~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD-~-~~~a~laA~~~gIP~V~i~~~~-----~~~--~~-~~y 156 (993)
....+.. +.. .....+....+++++++||+||+| + .+++.++|+.+|||++.+.... |.. .. ..+
T Consensus 91 ~~~~~~~~~~~----~~~~~~~~l~~~l~~~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (415)
T 3rsc_A 91 LGVRPHLMYLR----ENVSVLRATAEALDGDVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNEHYSFSQDMVTLA 166 (415)
T ss_dssp SCHHHHHHHHH----HHHHHHHHHHHHHSSSCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhccCCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccCcccccccccccc
Confidence 0011111 111 122334566788899999999999 4 5667888999999999874211 211 11 111
Q ss_pred HhhcccchHHH---HHHHHhhccc-----------cceee-ecCCCCCCC--CC-CceeecCcccccCCcChHHHHHHhC
Q 001939 157 VMAAGHHHRSI---VWQIAEDYSH-----------CEFLI-RLPGYCPMP--AF-RDVIDVPLVVRRLHKSRKEVRKELG 218 (993)
Q Consensus 157 ~~~~~~~~~~i---~~~l~~~y~~-----------~d~ll-~~p~~~~~p--~~-~~v~~vp~~~~~~~~~~~~~r~~l~ 218 (993)
....+...... ...+...+.. .+..+ .++.....+ .+ ..++.+|+..... .+..++..
T Consensus 167 ~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vGp~~~~~----~~~~~~~~ 242 (415)
T 3rsc_A 167 GTIDPLDLPVFRDTLRDLLAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTFDDRFVFVGPCFDDR----RFLGEWTR 242 (415)
T ss_dssp TCCCGGGCHHHHHHHHHHHHHTTCCCCHHHHHTCCCSEEEESSCTTTSTTGGGCCTTEEECCCCCCCC----GGGCCCCC
T ss_pred ccCChhhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcCcccCCCcccCCCceEEeCCCCCCc----ccCcCccc
Confidence 00000001111 1111111211 02222 233322211 01 2345565432211 11111222
Q ss_pred CCCCCcEEEEEcCCCCCh-h----hHHHhhCCCCcEEEE-eCCCCC-----CCCCCeEECCCCCCHHHHHhhcCEEEecC
Q 001939 219 IEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCLV-CGASDS-----QLPPNFIKLPKDAYTPDFMAASDCMLGKI 287 (993)
Q Consensus 219 ~~~~~~~Vlvs~G~~~~~-~----~ll~~l~~~~~~~vv-~G~~~~-----~l~~nv~~~~~~~~~pdlL~~adl~It~~ 287 (993)
..+++++||+++|+.... . .+++.+...++.+++ +|.... .+++|+++.+|.+++ ++|++||+||+|+
T Consensus 243 ~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~~l~~~~~~v~~~~~~~~~-~ll~~ad~~v~~~ 321 (415)
T 3rsc_A 243 PADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQPWHVVMTLGGQVDPAALGDLPPNVEAHRWVPHV-KVLEQATVCVTHG 321 (415)
T ss_dssp CSSCCCEEEEECTTTSCCCHHHHHHHHHHHTTSSCEEEEECTTTSCGGGGCCCCTTEEEESCCCHH-HHHHHEEEEEESC
T ss_pred cCCCCCEEEEECCCCCCChHHHHHHHHHHHhcCCcEEEEEeCCCCChHHhcCCCCcEEEEecCCHH-HHHhhCCEEEECC
Confidence 235778999999997653 1 233344333466554 676422 268899999988765 9999999999999
Q ss_pred ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc---------CCCC
Q 001939 288 GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGIN 358 (993)
Q Consensus 288 G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~ 358 (993)
|++|++|++++|+|+|++| ...||..|++++++.|+|+.+..++++++.|.++|.++++++.... ...+
T Consensus 322 G~~t~~Ea~~~G~P~v~~p--~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 399 (415)
T 3rsc_A 322 GMGTLMEALYWGRPLVVVP--QSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAMRGHVRRAG 399 (415)
T ss_dssp CHHHHHHHHHTTCCEEECC--CSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHhCCCEEEeC--CcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998 5789999999999999999999888899999999999998863211 3568
Q ss_pred HHHHHHHHHHHHH
Q 001939 359 GGEVAAHILQETA 371 (993)
Q Consensus 359 ga~~~a~~i~~~~ 371 (993)
|+.++++.|++++
T Consensus 400 ~~~~~~~~i~~~~ 412 (415)
T 3rsc_A 400 GAARAADAVEAYL 412 (415)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8889998888875
No 21
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.93 E-value=1.8e-24 Score=248.89 Aligned_cols=343 Identities=18% Similarity=0.114 Sum_probs=207.5
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccc--cCccccChHHHHH
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQ--ADALTVDRLASLE 93 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~ 93 (993)
++|+|++ ..+.||++++++|+++|+++||+|+|+++.. +...+...++.+.....+..... ...........+.
T Consensus 5 ~~il~~~-~~~~Ghv~~~~~La~~L~~~GheV~v~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (402)
T 3ia7_A 5 RHILFAN-VQGHGHVYPSLGLVSELARRGHRITYVTTPL---FADEVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQLH 80 (402)
T ss_dssp CEEEEEC-CSSHHHHHHHHHHHHHHHHTTCEEEEEECHH---HHHHHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHHHH
T ss_pred CEEEEEe-CCCCcccccHHHHHHHHHhCCCEEEEEcCHH---HHHHHHHcCCEEEecccccccccccccccccchHHHHH
Confidence 3666554 5589999999999999999999999998642 11111111223332211110000 0001111111111
Q ss_pred H-HHHHhhccHHHhHHHHHHHHhcCCCcEEEEC-C-CchHHHHHHHcCCcEEEEecCc--h---hH--HHHHHHhh-ccc
Q 001939 94 K-YSETAVAPRKSILKDEVEWLNSIKADLVVSD-V-VPVACRAAADAGIRSVCVTNFS--W---DF--IYAEYVMA-AGH 162 (993)
Q Consensus 94 ~-~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD-~-~~~a~laA~~~gIP~V~i~~~~--~---~~--~~~~y~~~-~~~ 162 (993)
. +.. .....+....+++++++||+||+| + .+++.++|+.+|||++.+.... | .. ........ .+.
T Consensus 81 ~~~~~----~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (402)
T 3ia7_A 81 LVYVR----ENVAILRAAEEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEHYSLFKELWKSNGQRHPA 156 (402)
T ss_dssp HHHHH----HHHHHHHHHHHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTTBCHHHHHHHHHTCCCGG
T ss_pred HHHHH----HHHHHHHHHHHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCccccccccccccccccChh
Confidence 1 111 222335566788899999999999 4 5677888999999999874321 1 11 00000000 000
Q ss_pred chHHHH---HHHHhhccc----------c-ceee-ecCCCCCCC--C-CCceeecCcccccCCcChHHHHHHhCCCCCCc
Q 001939 163 HHRSIV---WQIAEDYSH----------C-EFLI-RLPGYCPMP--A-FRDVIDVPLVVRRLHKSRKEVRKELGIEDDVK 224 (993)
Q Consensus 163 ~~~~i~---~~l~~~y~~----------~-d~ll-~~p~~~~~p--~-~~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~ 224 (993)
...... ..+...+.. . +..+ .++.....+ . ..+++.+|+.... +.+...+....++++
T Consensus 157 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vGp~~~~----~~~~~~~~~~~~~~~ 232 (402)
T 3ia7_A 157 DVEAVHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLPKSFQPFAETFDERFAFVGPTLTG----RDGQPGWQPPRPDAP 232 (402)
T ss_dssp GSHHHHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSCGGGSTTGGGCCTTEEECCCCCCC--------CCCCCSSTTCC
T ss_pred hHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcChHhCCccccCCCCeEEeCCCCCC----cccCCCCcccCCCCC
Confidence 011111 111111110 0 2222 222221111 0 1234556543221 111112222245778
Q ss_pred EEEEEcCCCCCh-h----hHHHhhCCCCcEEE-EeCCCCC-----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhHHH
Q 001939 225 LLILNFGGQPAG-W----KLKEEYLPSGWKCL-VCGASDS-----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVS 293 (993)
Q Consensus 225 ~Vlvs~G~~~~~-~----~ll~~l~~~~~~~v-v~G~~~~-----~l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~ 293 (993)
+||+++|+.... . .+++.+...++.++ ++|.... .+++|+++.+|.+++ ++|++||+||+|+|++|++
T Consensus 233 ~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~-~ll~~ad~~v~~~G~~t~~ 311 (402)
T 3ia7_A 233 VLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFLDPAVLGPLPPNVEAHQWIPFH-SVLAHARACLTHGTTGAVL 311 (402)
T ss_dssp EEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTSCGGGGCSCCTTEEEESCCCHH-HHHTTEEEEEECCCHHHHH
T ss_pred EEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcCChhhhCCCCCcEEEecCCCHH-HHHhhCCEEEECCCHHHHH
Confidence 999999998753 1 23334443446554 4676422 268899999998876 9999999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc---------CCCCHHHHHH
Q 001939 294 EALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAA 364 (993)
Q Consensus 294 Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~ga~~~a 364 (993)
|++++|+|+|++|.+ ..||..|++.+++.|+|+.+..++++++.|.++|.++++++.... ...+++.+++
T Consensus 312 Ea~~~G~P~v~~p~~-~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (402)
T 3ia7_A 312 EAFAAGVPLVLVPHF-ATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRMQRDILSSGGPARAA 390 (402)
T ss_dssp HHHHTTCCEEECGGG-CGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHhCCCEEEeCCC-cccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhCChHHHHH
Confidence 999999999999842 679999999999999999999888899999999999998873211 4678999999
Q ss_pred HHHHHHHc
Q 001939 365 HILQETAI 372 (993)
Q Consensus 365 ~~i~~~~~ 372 (993)
+.|++++.
T Consensus 391 ~~i~~~~~ 398 (402)
T 3ia7_A 391 DEVEAYLG 398 (402)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988864
No 22
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.92 E-value=6.6e-24 Score=246.26 Aligned_cols=344 Identities=10% Similarity=0.016 Sum_probs=199.4
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccC-CccccCccccChHHHHHH
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDC-GAVQADALTVDRLASLEK 94 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~ 94 (993)
|+|+++ ++.+.||++|+++||++|+++||+|+|++.... ...+...++.+....... ..... ....... .
T Consensus 1 M~Il~~-~~~~~GHv~P~l~la~~L~~~Gh~V~~~~~~~~---~~~v~~~g~~~~~i~~~~~~~~~~--~~~~~~~---~ 71 (415)
T 1iir_A 1 MRVLLA-TCGSRGDTEPLVALAVRVRDLGADVRMCAPPDC---AERLAEVGVPHVPVGPSARAPIQR--AKPLTAE---D 71 (415)
T ss_dssp CEEEEE-CCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGG---HHHHHHTTCCEEECCC-------C--CSCCCHH---H
T ss_pred CeEEEE-cCCCchhHHHHHHHHHHHHHCCCeEEEEcCHHH---HHHHHHcCCeeeeCCCCHHHHhhc--ccccchH---H
Confidence 466665 677899999999999999999999999987641 111111112222211110 00000 0001110 1
Q ss_pred HHHHhhccHHHhHHHHH-HHHh-cCCCcEEEECC--Cch--HHHHHHHcCCcEEEEecCc-hhH------------H---
Q 001939 95 YSETAVAPRKSILKDEV-EWLN-SIKADLVVSDV--VPV--ACRAAADAGIRSVCVTNFS-WDF------------I--- 152 (993)
Q Consensus 95 ~~~~~~~~~~~~l~~~~-~~L~-~~kPDlVVsD~--~~~--a~laA~~~gIP~V~i~~~~-~~~------------~--- 152 (993)
+..++. ....... ++++ ..+||+||+|. .++ +..+|+.+|||++.+.... +.. .
T Consensus 72 ~~~~~~----~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~p~~~~~~~~~~~ 147 (415)
T 1iir_A 72 VRRFTT----EAIATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSPYYPPPPLGEPSTQD 147 (415)
T ss_dssp HHHHHH----HHHHHHHHHHHHHTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCC--------
T ss_pred HHHHHH----HHHHHHHHHHHHHhcCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCcCCCcccCCccCCccccch
Confidence 111110 1111222 2222 67999999986 456 7788999999999884322 100 0
Q ss_pred -HHHHHhhc--cc----chHHHHHHHHhhcccc------------ceeeecCCCCC---CCCCCceeecCccccc-CCcC
Q 001939 153 -YAEYVMAA--GH----HHRSIVWQIAEDYSHC------------EFLIRLPGYCP---MPAFRDVIDVPLVVRR-LHKS 209 (993)
Q Consensus 153 -~~~y~~~~--~~----~~~~i~~~l~~~y~~~------------d~ll~~p~~~~---~p~~~~v~~vp~~~~~-~~~~ 209 (993)
........ .. ........+...+... -.+..++.... .+.. ++..+|+.... +...
T Consensus 148 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~vG~~~~~~~~~~ 226 (415)
T 1iir_A 148 TIDIPAQWERNNQSAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTDHPWVAADPVLAPLQPTDL-DAVQTGAWILPDERPL 226 (415)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCCCCCSS-CCEECCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCccccccCCCCEEEeeChhhcCCCcccC-CeEeeCCCccCcccCC
Confidence 00000000 00 0000011111111100 01222222221 1222 55667765442 2234
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCC-Ch---hhHHHhhCCCCcEE-EEeCCCCCC---CCCCeEECCCCCCHHHHHhhcC
Q 001939 210 RKEVRKELGIEDDVKLLILNFGGQP-AG---WKLKEEYLPSGWKC-LVCGASDSQ---LPPNFIKLPKDAYTPDFMAASD 281 (993)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~G~~~-~~---~~ll~~l~~~~~~~-vv~G~~~~~---l~~nv~~~~~~~~~pdlL~~ad 281 (993)
+.++.++++ .++++||+++||.+ .. ..+++.+...++.+ +++|..... +++|+++.+|.+. .++|++||
T Consensus 227 ~~~~~~~l~--~~~~~v~v~~Gs~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~~~~~~~v~~~~~~~~-~~~l~~~d 303 (415)
T 1iir_A 227 SPELAAFLD--AGPPPVYLGFGSLGAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNH-QVLFGRVA 303 (415)
T ss_dssp CHHHHHHHH--TSSCCEEEECC---CCHHHHHHHHHHHHHTTCCEEECTTCTTCCCSSCGGGEEECSSCCH-HHHGGGSS
T ss_pred CHHHHHHHh--hCCCeEEEeCCCCCCcHHHHHHHHHHHHHCCCeEEEEeCCCcccccCCCCCEEEeCcCCh-HHHHhhCC
Confidence 566777764 34578999999985 32 12333332224444 445754322 5789999888764 58999999
Q ss_pred EEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc-------
Q 001939 282 CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE------- 354 (993)
Q Consensus 282 l~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~------- 354 (993)
+||+|+|++|++|++++|+|+|++| .+.||..|++++++.|+|+.++.++++++.+.++|+++ .++....
T Consensus 304 ~~v~~~G~~t~~Ea~~~G~P~i~~p--~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~~~ 380 (415)
T 1iir_A 304 AVIHHGGAGTTHVAARAGAPQILLP--QMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA-LTPETHARATAVAG 380 (415)
T ss_dssp EEEECCCHHHHHHHHHHTCCEEECC--CSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH-TSHHHHHHHHHHHH
T ss_pred EEEeCCChhHHHHHHHcCCCEEECC--CCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH-cCHHHHHHHHHHHH
Confidence 9999999999999999999999999 57899999999999999999988888999999999999 7753211
Q ss_pred --CCCCHHHHHHHHHHHHHccCccccCCCCcchhh
Q 001939 355 --GGINGGEVAAHILQETAIGKNYASDKLSGARRL 387 (993)
Q Consensus 355 --~~~~ga~~~a~~i~~~~~~~~~~~~~~~Ga~~L 387 (993)
...+|+.+++++|++++ +++|+.+|
T Consensus 381 ~~~~~~~~~~~~~~i~~~~--------~~~~~~~~ 407 (415)
T 1iir_A 381 TIRTDGAAVAARLLLDAVS--------REKPTVSA 407 (415)
T ss_dssp HSCSCHHHHHHHHHHHHHH--------TC------
T ss_pred HHhhcChHHHHHHHHHHHH--------hcccHHHH
Confidence 46889999999999874 35677776
No 23
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.92 E-value=2.2e-24 Score=248.66 Aligned_cols=319 Identities=17% Similarity=0.112 Sum_probs=178.0
Q ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCc---------cccCc
Q 001939 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGA---------VQADA 83 (993)
Q Consensus 13 m~~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~---------~~~~~ 83 (993)
...|+|+|++. .+.||++++++|+++|+++||+|+|++... +...+...++.+.....+... .....
T Consensus 13 ~~~MrIl~~~~-~~~gh~~~~~~La~~L~~~GheV~v~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (398)
T 4fzr_A 13 GSHMRILVIAG-CSEGFVMPLVPLSWALRAAGHEVLVAASEN---MGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTT 88 (398)
T ss_dssp --CCEEEEECC-SSHHHHGGGHHHHHHHHHTTCEEEEEEEGG---GHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCC
T ss_pred CCceEEEEEcC-CCcchHHHHHHHHHHHHHCCCEEEEEcCHH---HHHHHHhCCCeeEecCCccchHhhhhhhccCcccc
Confidence 44578877654 488999999999999999999999998642 111111011112121100000 00000
Q ss_pred cccChHHHHHHHHHHhhccHHHhHHHHHHHHhcCCCcEEEECC-CchHHHHHHHcCCcEEEEec-Cc-hhHHHHHHHhhc
Q 001939 84 LTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTN-FS-WDFIYAEYVMAA 160 (993)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~-~~-~~~~~~~y~~~~ 160 (993)
+..............+.......+....+++++++||+||+|. .+++.++|+.++||++.+.. +. +.......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~~~~~~~~~~~~---- 164 (398)
T 4fzr_A 89 MPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPELIKSAG---- 164 (398)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCHHHHHHH----
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECccccHHHHHHHhhCCCEEEeccCCCCchhhhHHH----
Confidence 0111111122222222112233455667888999999999986 67788889999999998732 21 21111110
Q ss_pred ccchHHHHHHHHhhccc-----cceee-ecCCCCCCCCCC---ceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcC
Q 001939 161 GHHHRSIVWQIAEDYSH-----CEFLI-RLPGYCPMPAFR---DVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFG 231 (993)
Q Consensus 161 ~~~~~~i~~~l~~~y~~-----~d~ll-~~p~~~~~p~~~---~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G 231 (993)
...+... ...|.. .+..+ .++.....+... .+..+|... .+.++.+++..++++++||+++|
T Consensus 165 ---~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~v~~G 235 (398)
T 4fzr_A 165 ---VGELAPE-LAELGLTDFPDPLLSIDVCPPSMEAQPKPGTTKMRYVPYNG-----RNDQVPSWVFEERKQPRLCLTFG 235 (398)
T ss_dssp ---HHHTHHH-HHTTTCSSCCCCSEEEECSCGGGC----CCCEECCCCCCCC-----SSCCCCHHHHSCCSSCEEECC--
T ss_pred ---HHHHHHH-HHHcCCCCCCCCCeEEEeCChhhCCCCCCCCCCeeeeCCCC-----CCCCCchhhhcCCCCCEEEEEcc
Confidence 0111111 222211 11112 122111111000 011122110 11112222333357789999999
Q ss_pred CCCC---------h----hhHHHhhCCCCcEEEEe-CCCCC----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhHHH
Q 001939 232 GQPA---------G----WKLKEEYLPSGWKCLVC-GASDS----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVS 293 (993)
Q Consensus 232 ~~~~---------~----~~ll~~l~~~~~~~vv~-G~~~~----~l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~ 293 (993)
+... . ..+++.+...++.+++. |.... .+++|+++.+|.+ ++++|++||+||+|+|++|++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~l~~~~~~v~~~~~~~-~~~ll~~ad~~v~~gG~~t~~ 314 (398)
T 4fzr_A 236 TRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLAAGQFP-LSAIMPACDVVVHHGGHGTTL 314 (398)
T ss_dssp --------------CCSHHHHHHHGGGGTCEEEECCCC--------CCTTEEEESCCC-HHHHGGGCSEEEECCCHHHHH
T ss_pred CcccccccccccchHHHHHHHHHHHHhCCCEEEEEeCCcchhhhccCCCcEEEeCcCC-HHHHHhhCCEEEecCCHHHHH
Confidence 8742 1 12334443346666654 43321 2689999999984 789999999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCC
Q 001939 294 EALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (993)
Q Consensus 294 Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (993)
||+++|+|+|++| .+.||..|++++++.|+|+.+...+++++.|.++|.++++++.
T Consensus 315 Ea~~~G~P~v~~p--~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~ 370 (398)
T 4fzr_A 315 TCLSEGVPQVSVP--VIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDDSS 370 (398)
T ss_dssp HHHHTTCCEEECC--CSGGGHHHHHHHHHTTSEEECC-------CHHHHHHHHHHCTH
T ss_pred HHHHhCCCEEecC--CchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHH
Confidence 9999999999998 5689999999999999999999888888999999999998873
No 24
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.92 E-value=7.7e-24 Score=244.94 Aligned_cols=338 Identities=13% Similarity=0.056 Sum_probs=198.1
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCcccc-C-ccccChHHHHH
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQA-D-ALTVDRLASLE 93 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~-~-~~~~~~~~~~~ 93 (993)
|+|++++ ....||+.|+++|+++|+++||+|+|++... +...+...++.+.+...+...... . .........
T Consensus 1 MrIli~~-~gt~Ghv~p~~~La~~L~~~Gh~V~v~~~~~---~~~~v~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-- 74 (404)
T 3h4t_A 1 MGVLITG-CGSRGDTEPLVALAARLRELGADARMCLPPD---YVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEV-- 74 (404)
T ss_dssp -CEEEEE-ESSHHHHHHHHHHHHHHHHTTCCEEEEECGG---GHHHHHHTTCCEEECSSCSSGGGSCTTCCCTTCGGG--
T ss_pred CeEEEEe-CCCCccHHHHHHHHHHHHHCCCeEEEEeCHH---HHHHHHHcCCceeecCCCHHHHhccccCCHHHHHHH--
Confidence 4565554 3457999999999999999999999998753 111111011122221111000000 0 000000000
Q ss_pred HHHHHhhccHHHhHHHHHHHHhcCCCcEEEECCC-chH---HHHHHHcCCcEEEEecCchhHHHHHH---Hhh-c---cc
Q 001939 94 KYSETAVAPRKSILKDEVEWLNSIKADLVVSDVV-PVA---CRAAADAGIRSVCVTNFSWDFIYAEY---VMA-A---GH 162 (993)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~-~~a---~laA~~~gIP~V~i~~~~~~~~~~~y---~~~-~---~~ 162 (993)
+.. .....+....+.+ .+||+||+|.. +.+ ..+|+.+|||++.+....|......+ ... . ..
T Consensus 75 -~~~----~~~~~~~~l~~~~--~~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~~~~~~~~~~~~~~~~~~~~ 147 (404)
T 3h4t_A 75 -VTE----VVAEWFDKVPAAI--EGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQAERDMYNQGADR 147 (404)
T ss_dssp -HHH----HHHHHHHHHHHHH--TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGGSCHHHHHHHHHHHHH
T ss_pred -HHH----HHHHHHHHHHHHh--cCCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCccCCChhHHHHHHHHHHHHHH
Confidence 111 1111222222333 37999998753 333 67889999999987543331000000 000 0 00
Q ss_pred chHHHHHHHHhhccc-----------cc-eeeecCCCC-CCCC-CCceeecCcccc-cCCcChHHHHHHhCCCCCCcEEE
Q 001939 163 HHRSIVWQIAEDYSH-----------CE-FLIRLPGYC-PMPA-FRDVIDVPLVVR-RLHKSRKEVRKELGIEDDVKLLI 227 (993)
Q Consensus 163 ~~~~i~~~l~~~y~~-----------~d-~ll~~p~~~-~~p~-~~~v~~vp~~~~-~~~~~~~~~r~~l~~~~~~~~Vl 227 (993)
.+..........+.. .+ .++...+.. +.+. .+.+..+|.... .....+++++++++ +++++||
T Consensus 148 ~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~l~~~~~~l~p~~~~~~~~~~~G~~~~~~~~~~~~~l~~~l~--~~~~~Vl 225 (404)
T 3h4t_A 148 LFGDAVNSHRASIGLPPVEHLYDYGYTDQPWLAADPVLSPLRPTDLGTVQTGAWILPDQRPLSAELEGFLR--AGSPPVY 225 (404)
T ss_dssp HHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSCCCTTCCSCCBCCCCCCCCCCCCCHHHHHHHH--TSSCCEE
T ss_pred HhHHHHHHHHHHcCCCCCcchhhccccCCeEEeeCcceeCCCCCCCCeEEeCccccCCCCCCCHHHHHHHh--cCCCeEE
Confidence 000011111111110 01 111111111 1111 123344453322 23345677877775 4678899
Q ss_pred EEcCCCCCh----hhHHHhhCCCCcEEE-EeCCCCCC---CCCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcC
Q 001939 228 LNFGGQPAG----WKLKEEYLPSGWKCL-VCGASDSQ---LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYK 299 (993)
Q Consensus 228 vs~G~~~~~----~~ll~~l~~~~~~~v-v~G~~~~~---l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~G 299 (993)
|++||.+.. ..+++.+...++.++ .+|..... .++|+++.+|.+ ..++|++||+||||||+||++|++++|
T Consensus 226 v~~Gs~~~~~~~~~~~~~al~~~~~~vv~~~g~~~~~~~~~~~~v~~~~~~~-~~~ll~~~d~~v~~gG~~t~~Eal~~G 304 (404)
T 3h4t_A 226 VGFGSGPAPAEAARVAIEAVRAQGRRVVLSSGWAGLGRIDEGDDCLVVGEVN-HQVLFGRVAAVVHHGGAGTTTAVTRAG 304 (404)
T ss_dssp ECCTTSCCCTTHHHHHHHHHHHTTCCEEEECTTTTCCCSSCCTTEEEESSCC-HHHHGGGSSEEEECCCHHHHHHHHHHT
T ss_pred EECCCCCCcHHHHHHHHHHHHhCCCEEEEEeCCcccccccCCCCEEEecCCC-HHHHHhhCcEEEECCcHHHHHHHHHcC
Confidence 999998732 123333333355444 45644322 588999998876 478999999999999999999999999
Q ss_pred CcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc----------CCCCHHHHHHHHHHH
Q 001939 300 LPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE----------GGINGGEVAAHILQE 369 (993)
Q Consensus 300 vP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~----------~~~~ga~~~a~~i~~ 369 (993)
+|+|++| .+.||+.|++++++.|+|+.+...+++++.+.++|+++++ + .++ .. +|+++++++|++
T Consensus 305 vP~v~~p--~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~-~-~~~~~~~~~~~~~~~-~~~~~~~~~i~~ 379 (404)
T 3h4t_A 305 APQVVVP--QKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT-P-GIRARAAAVAGTIRT-DGTTVAAKLLLE 379 (404)
T ss_dssp CCEEECC--CSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS-H-HHHHHHHHHHTTCCC-CHHHHHHHHHHH
T ss_pred CCEEEcC--CcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHhC-H-HHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence 9999998 5789999999999999999999888899999999999997 5 322 34 999999999999
Q ss_pred HHccC
Q 001939 370 TAIGK 374 (993)
Q Consensus 370 ~~~~~ 374 (993)
++...
T Consensus 380 ~~~~~ 384 (404)
T 3h4t_A 380 AISRQ 384 (404)
T ss_dssp HHHC-
T ss_pred HHhhC
Confidence 98653
No 25
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.92 E-value=4e-24 Score=250.18 Aligned_cols=346 Identities=15% Similarity=0.103 Sum_probs=204.3
Q ss_pred CcEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccC---CccccC--c-----
Q 001939 14 KHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDC---GAVQAD--A----- 83 (993)
Q Consensus 14 ~~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~---g~~~~~--~----- 83 (993)
..|+|+|+ ++.+.||++|+++|+++|+++||+|+|++.... ...+...++.+.+...+. +..... .
T Consensus 19 ~~mrIl~~-~~~~~GHv~p~l~la~~L~~~GheV~~~~~~~~---~~~v~~~G~~~~~i~~~~~~~~~~~~~~~~~~~~~ 94 (441)
T 2yjn_A 19 SHMRVVFS-SMASKSHLFGLVPLAWAFRAAGHEVRVVASPAL---TEDITAAGLTAVPVGTDVDLVDFMTHAGHDIIDYV 94 (441)
T ss_dssp CCCEEEEE-CCSCHHHHTTTHHHHHHHHHTTCEEEEEECGGG---HHHHHTTTCCEEECSCCCCHHHHHHHTTHHHHHHH
T ss_pred CccEEEEE-cCCCcchHhHHHHHHHHHHHCCCeEEEEeCchh---HHHHHhCCCceeecCCccchHHHhhhhhccccccc
Confidence 34677766 677789999999999999999999999987541 121211222332221111 110000 0
Q ss_pred --cc-----cC--hHHHHHH----HHHHhhccH-HH-hHHHHHHHHhcCCCcEEEECC-CchHHHHHHHcCCcEEEEec-
Q 001939 84 --LT-----VD--RLASLEK----YSETAVAPR-KS-ILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTN- 146 (993)
Q Consensus 84 --~~-----~~--~~~~~~~----~~~~~~~~~-~~-~l~~~~~~L~~~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~- 146 (993)
.. .. ....+.. +...+.... .. .+.+..+++++++||+||+|. .+++.++|+.+|||++.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~aA~~lgiP~v~~~~~ 174 (441)
T 2yjn_A 95 RSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKWRPDLVIWEPLTFAAPIAAAVTGTPHARLLWG 174 (441)
T ss_dssp TTCCCTTCCGGGGSHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHHTCCEEEECSS
T ss_pred ccccccccCcchhhhhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCEEEecCcchhHHHHHHHcCCCEEEEecC
Confidence 00 00 0000101 111111000 01 455667778889999999998 67788899999999998832
Q ss_pred Cchh-HHHHHHHhhc---c--cchH---HHHHHHHhhccc---------cceeee-cCCCCCCC-CCC--ceeecCcccc
Q 001939 147 FSWD-FIYAEYVMAA---G--HHHR---SIVWQIAEDYSH---------CEFLIR-LPGYCPMP-AFR--DVIDVPLVVR 204 (993)
Q Consensus 147 ~~~~-~~~~~y~~~~---~--~~~~---~i~~~l~~~y~~---------~d~ll~-~p~~~~~p-~~~--~v~~vp~~~~ 204 (993)
..+. .....+.... + .... .........+.. .+..+. ++.....+ ..+ .++++|..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 252 (441)
T 2yjn_A 175 PDITTRARQNFLGLLPDQPEEHREDPLAEWLTWTLEKYGGPAFDEEVVVGQWTIDPAPAAIRLDTGLKTVGMRYVDYN-- 252 (441)
T ss_dssp CCHHHHHHHHHHHHGGGSCTTTCCCHHHHHHHHHHHHTTCCCCCGGGTSCSSEEECSCGGGSCCCCCCEEECCCCCCC--
T ss_pred CCcchhhhhhhhhhccccccccccchHHHHHHHHHHHcCCCCCCccccCCCeEEEecCccccCCCCCCCCceeeeCCC--
Confidence 1111 1111111100 0 0001 111122222211 111221 11111111 111 01111110
Q ss_pred cCCcChHHHHHHhCCCCCCcEEEEEcCCCCCh--------hhHHHhhCCCCcEEEE-eCCCCC----CCCCCeEECCCCC
Q 001939 205 RLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--------WKLKEEYLPSGWKCLV-CGASDS----QLPPNFIKLPKDA 271 (993)
Q Consensus 205 ~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~--------~~ll~~l~~~~~~~vv-~G~~~~----~l~~nv~~~~~~~ 271 (993)
.+.++.++++..+++++||+++|+.+.. ..+++.+...++.+++ +|.... .+++|+++.+|++
T Consensus 253 ----~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~l~~~~~~v~~~~~~~ 328 (441)
T 2yjn_A 253 ----GPSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLEGVANIPDNVRTVGFVP 328 (441)
T ss_dssp ----SSCCCCGGGSSCCSSCEEEEEC----------CCSTTTTHHHHHTSSSEEEECCCTTTTSSCSSCCSSEEECCSCC
T ss_pred ----CCcccchHhhcCCCCCEEEEECCCCcccccChHHHHHHHHHHHHcCCCEEEEEECCcchhhhccCCCCEEEecCCC
Confidence 1122345565445778999999998642 1234444334666655 453321 2578999999887
Q ss_pred CHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCC
Q 001939 272 YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (993)
Q Consensus 272 ~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (993)
. .++|++||+||+|+|++|++|++++|+|+|++| .+.||..|++++++.|+|+.+..++++++.|.++|+++++++.
T Consensus 329 ~-~~ll~~ad~~V~~~G~~t~~Ea~~~G~P~i~~p--~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 405 (441)
T 2yjn_A 329 M-HALLPTCAATVHHGGPGSWHTAAIHGVPQVILP--DGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPA 405 (441)
T ss_dssp H-HHHGGGCSEEEECCCHHHHHHHHHTTCCEEECC--CSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHHHCHH
T ss_pred H-HHHHhhCCEEEECCCHHHHHHHHHhCCCEEEeC--CcccHHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHhcCHH
Confidence 5 789999999999999999999999999999999 5789999999999999999999888899999999999998873
Q ss_pred Ccc---------CCCCHHHHHHHHHHHHHc
Q 001939 352 CYE---------GGINGGEVAAHILQETAI 372 (993)
Q Consensus 352 ~~~---------~~~~ga~~~a~~i~~~~~ 372 (993)
... ...+++.++++.|++++.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 406 HRAGAARMRDDMLAEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 211 467889999999998864
No 26
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.92 E-value=2.6e-23 Score=241.23 Aligned_cols=342 Identities=10% Similarity=0.017 Sum_probs=200.1
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccC-CccccCccccChHHHHHH
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDC-GAVQADALTVDRLASLEK 94 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~ 94 (993)
|+|+++ ++.+.||++|+++||++|+++||+|+|++... +...+...++.+.+...+. +.... .........
T Consensus 1 MrIl~~-~~~~~GH~~p~l~la~~L~~~Gh~V~~~~~~~---~~~~v~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~--- 72 (416)
T 1rrv_A 1 MRVLLS-VCGTRGDVEIGVALADRLKALGVQTRMCAPPA---AEERLAEVGVPHVPVGLPQHMMLQE-GMPPPPPEE--- 72 (416)
T ss_dssp CEEEEE-EESCHHHHHHHHHHHHHHHHTTCEEEEEECGG---GHHHHHHHTCCEEECSCCGGGCCCT-TSCCCCHHH---
T ss_pred CeEEEE-ecCCCccHHHHHHHHHHHHHCCCeEEEEeCHH---HHHHHHHcCCeeeecCCCHHHHHhh-ccccchhHH---
Confidence 467666 56789999999999999999999999998754 1111110112222211110 11000 000010001
Q ss_pred HHHHhhccHHHhHHHHHHHHh--cCCCcEEEECC--Cch--HHHHHHHcCCcEEEEecCc-hhHHHHHHHh------h-c
Q 001939 95 YSETAVAPRKSILKDEVEWLN--SIKADLVVSDV--VPV--ACRAAADAGIRSVCVTNFS-WDFIYAEYVM------A-A 160 (993)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~L~--~~kPDlVVsD~--~~~--a~laA~~~gIP~V~i~~~~-~~~~~~~y~~------~-~ 160 (993)
+..++. .......+.+. ..+||+||+|. .++ +..+|+.+|||++.+.... +... .+.+ . .
T Consensus 73 ~~~~~~----~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~~~~~--~~~p~~~~~~~~~ 146 (416)
T 1rrv_A 73 EQRLAA----MTVEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLAS--PHLPPAYDEPTTP 146 (416)
T ss_dssp HHHHHH----HHHHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCC--SSSCCCBCSCCCT
T ss_pred HHHHHH----HHHHHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCCCCCC--cccCCCCCCCCCc
Confidence 111111 11122233333 67999999986 455 7788999999999874321 1100 0000 0 0
Q ss_pred c-cc-------hH--------HHHHHHHhhccc------------cceeeecCCCCC--CCCCCceeecCccccc-CCcC
Q 001939 161 G-HH-------HR--------SIVWQIAEDYSH------------CEFLIRLPGYCP--MPAFRDVIDVPLVVRR-LHKS 209 (993)
Q Consensus 161 ~-~~-------~~--------~i~~~l~~~y~~------------~d~ll~~p~~~~--~p~~~~v~~vp~~~~~-~~~~ 209 (993)
+ .. .+ .....+...+.. .-.+..++.... .+.. ++..+|+.... ....
T Consensus 147 ~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~vG~~~~~~~~~~ 225 (416)
T 1rrv_A 147 GVTDIRVLWEERAARFADRYGPTLNRRRAEIGLPPVEDVFGYGHGERPLLAADPVLAPLQPDV-DAVQTGAWLLSDERPL 225 (416)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTTCSSCEECSCTTTSCCCSSC-CCEECCCCCCCCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCchhhhccCCCeEEccCccccCCCCCC-CeeeECCCccCccCCC
Confidence 0 00 00 000111111110 001222222221 1112 45566665432 2223
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCC--hhh----HHHhhCCCCcEE-EEeCCCCC---CCCCCeEECCCCCCHHHHHhh
Q 001939 210 RKEVRKELGIEDDVKLLILNFGGQPA--GWK----LKEEYLPSGWKC-LVCGASDS---QLPPNFIKLPKDAYTPDFMAA 279 (993)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~G~~~~--~~~----ll~~l~~~~~~~-vv~G~~~~---~l~~nv~~~~~~~~~pdlL~~ 279 (993)
+.++.++++ +++++|||++||.+. ..+ +++.+...++.+ +++|.... .+++|+++.+|.+ +.++|++
T Consensus 226 ~~~~~~~l~--~~~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~~~~~~~v~~~~~~~-~~~ll~~ 302 (416)
T 1rrv_A 226 PPELEAFLA--AGSPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTELVLPDDRDDCFAIDEVN-FQALFRR 302 (416)
T ss_dssp CHHHHHHHH--SSSCCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTCCCSCCCTTEEEESSCC-HHHHGGG
T ss_pred CHHHHHHHh--cCCCeEEEecCCCCccChHHHHHHHHHHHHHCCCeEEEEeCCccccccCCCCCEEEeccCC-hHHHhcc
Confidence 566666664 345789999999874 222 233332234544 44576532 2688999998886 6799999
Q ss_pred cCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc-----
Q 001939 280 SDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE----- 354 (993)
Q Consensus 280 adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~----- 354 (993)
||+||+|||++|++|++++|+|+|++| .+.||..|++++++.|+|+.+..++++++.+.++|+++ .++....
T Consensus 303 ~d~~v~~~G~~t~~Ea~~~G~P~i~~p--~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~ 379 (416)
T 1rrv_A 303 VAAVIHHGSAGTEHVATRAGVPQLVIP--RNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV-LAPETRARAEAV 379 (416)
T ss_dssp SSEEEECCCHHHHHHHHHHTCCEEECC--CSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH-TSHHHHHHHHHH
T ss_pred CCEEEecCChhHHHHHHHcCCCEEEcc--CCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh-hCHHHHHHHHHH
Confidence 999999999999999999999999999 57899999999999999999988888999999999999 7763111
Q ss_pred ----CCCCHHHHHHHHH-HHHHccCccccCCCCcchhh
Q 001939 355 ----GGINGGEVAAHIL-QETAIGKNYASDKLSGARRL 387 (993)
Q Consensus 355 ----~~~~ga~~~a~~i-~~~~~~~~~~~~~~~Ga~~L 387 (993)
...+|+ ++++.| ++++ +++|++|+
T Consensus 380 ~~~~~~~~~~-~~~~~i~e~~~--------~~~~~~~~ 408 (416)
T 1rrv_A 380 AGMVLTDGAA-AAADLVLAAVG--------REKPAVPA 408 (416)
T ss_dssp TTTCCCCHHH-HHHHHHHHHHH--------C-------
T ss_pred HHHHhhcCcH-HHHHHHHHHHh--------ccCCCCcc
Confidence 467788 888888 7763 35566665
No 27
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.91 E-value=7.2e-24 Score=237.04 Aligned_cols=300 Identities=10% Similarity=0.037 Sum_probs=190.6
Q ss_pred ceEEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCC
Q 001939 496 EIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRG 575 (993)
Q Consensus 496 ~~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~ 575 (993)
....++||+|++|+|+|+||++|+++|......+.+. ....+-++ +..+.+ +.
T Consensus 7 ~~~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~-~l~~~~~v---------------------~~~~~~--~~--- 59 (317)
T 2gs8_A 7 NVITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLE-NMFTTTSV---------------------SFLPDT--AT--- 59 (317)
T ss_dssp CEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE-EEEEEEEE---------------------EECCTT--CC---
T ss_pred CcEEEEecCcEEEEeeeeeccCCcccCCCCceEEEee-cccceEEE---------------------EEEcCC--CC---
Confidence 4568999999999999999999999999887665553 23322111 110000 00
Q ss_pred CceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHH
Q 001939 576 PTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVA 655 (993)
Q Consensus 576 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va 655 (993)
..++.++. ......|.|+++.++..+.+..+ .|++|.+.++||.++|||||||.+||
T Consensus 60 -~~~~~~~g------------------~~~~~~~~n~v~~~~~~~~~~~~----~g~~I~i~~~IP~~~GLGSSaA~~vA 116 (317)
T 2gs8_A 60 -SDQFYING------------------ILQNDEEHTKISAIIDQFRQPGQ----AFVKMETQNNMPTAAGLSSSSSGLSA 116 (317)
T ss_dssp -SCEEEETT------------------EECCHHHHHHHHHHHTTTCCTTC----CCEEEEEECCSCGGGCCCHHHHHHHH
T ss_pred -eEEEEECC------------------CccccchHHHHHHHHHHHHHhcC----CCeEEEEeCCCCCCCchHHHHHHHHH
Confidence 01111111 00113689999888775432222 58999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEE--EEEeCC
Q 001939 656 SMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRF--WGIDSG 733 (993)
Q Consensus 656 ~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~--ll~dSg 733 (993)
++.|++.++|.++++++|+++|+++|. +...+++||. +....+.... ...++|.++.+ ++++++
T Consensus 117 ~~~al~~l~g~~ls~~el~~la~~~~G----------~~~~~~~GG~---~~~~~~~~~~-~~~~~~~~~~~~v~i~~~~ 182 (317)
T 2gs8_A 117 LVKACDQLFDTQLDQKALAQKAKFASG----------SSSRSFFGPV---AAWDKDSGAI-YKVETDLKMAMIMLVLNAA 182 (317)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHG----------GGGGGGSCSE---EEECTTTCCE-EECCCCCCEEEEEEECCCS
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHhhcc----------hhHhhhcCCh---heEeeCCCce-eEEEccccccEEEEEEECC
Confidence 999999999999999999999998753 2356889994 3333222221 23455556664 344665
Q ss_pred CccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcC
Q 001939 734 IRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNI 813 (993)
Q Consensus 734 v~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~l 813 (993)
.++......|+. .+
T Consensus 183 ~~~~~tt~~~~~------------------------------------------------------------------~~ 196 (317)
T 2gs8_A 183 KKPISSREGMKL------------------------------------------------------------------CR 196 (317)
T ss_dssp SCCSCHHHHHHH------------------------------------------------------------------HH
T ss_pred CcCcccHHHHHH------------------------------------------------------------------Hh
Confidence 444321111110 00
Q ss_pred CccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhhhh-cC
Q 001939 814 PESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSA-CG 892 (993)
Q Consensus 814 p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~slr~-~~ 892 (993)
|... ...+++.| -..|+..++.+|.++ |++.||++|+++|..|.+ +.
T Consensus 197 ~~~~-------------------------~~~~~~~~---~~~~~~~~~~al~~~----d~~~lg~~~~~~~~~l~~~~~ 244 (317)
T 2gs8_A 197 DTST-------------------------TFDQWVEQ---SAIDYQHMLTYLKTN----NFEKVGQLTEANALAMHATTK 244 (317)
T ss_dssp HHCT-------------------------THHHHHHH---HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCH-------------------------HHHHHHHH---HHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHhh
Confidence 0000 00112222 155788899999986 999999999999888887 34
Q ss_pred CCCch-------HHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCc
Q 001939 893 LGSDG-------TDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPL 965 (993)
Q Consensus 893 vs~~~-------lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~ 965 (993)
.++|+ +.++.+.+.++. ..|++|+.|+|+| +|++++.+++. .+++.+++ ++ .+.
T Consensus 245 ~~~p~~~~l~~~~~~i~~~~~~~~--------~~G~~~~~~SGaG--ptv~~l~~~~~-~~~v~~~l----~~----~~~ 305 (317)
T 2gs8_A 245 TANPPFSYLTKESYQAMEAVKELR--------QEGFACYFTMDAG--PNVKVLCLEKD-LAQLAERL----GK----NYR 305 (317)
T ss_dssp TSSSCCCSCCHHHHHHHHHHHHHH--------HTTCCEEEECCSS--SCEEEEEEGGG-HHHHHHHH----HT----TSE
T ss_pred ccCCCceeEhHHHHHHHHHHHHHH--------hcCCcEEEEecCC--CeEEEEEcHHH-HHHHHHHH----hc----CCe
Confidence 44555 456655444321 1578899999888 99987765432 23344444 32 477
Q ss_pred EEee-cCCCCcc
Q 001939 966 IIEG-SSPGAGK 976 (993)
Q Consensus 966 ~~~~-~~~G~~~ 976 (993)
+|++ .++|+++
T Consensus 306 ~~~~~~~~~~~~ 317 (317)
T 2gs8_A 306 IIVSKTKDLPDV 317 (317)
T ss_dssp EEEEEBCCCCCC
T ss_pred EEEEecCCCCCC
Confidence 8887 7999864
No 28
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.91 E-value=1.4e-23 Score=241.83 Aligned_cols=327 Identities=14% Similarity=0.105 Sum_probs=194.2
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCcccc-------C------
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQA-------D------ 82 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~-------~------ 82 (993)
|+|+|++. .+.||++++++|+++|+++||+|+|++. . +...+...++.+.+...+..+... .
T Consensus 21 MrIl~~~~-~~~Ghv~~~~~La~~L~~~GheV~v~~~-~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (398)
T 3oti_A 21 MRVLFVSS-PGIGHLFPLIQLAWGFRTAGHDVLIAVA-E---HADRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRFAET 95 (398)
T ss_dssp CEEEEECC-SSHHHHGGGHHHHHHHHHTTCEEEEEES-S---CHHHHHTTTCEEEESSTTCCHHHHHHHHHHHCHHHHHT
T ss_pred CEEEEEcC-CCcchHhHHHHHHHHHHHCCCEEEEecc-c---hHHHHHhCCCeeEecCCccCHHHHhhhcccCCcccccc
Confidence 67776654 4899999999999999999999999987 3 122221122333332111000000 0
Q ss_pred ---ccccChHHHHHHHHHHhhccHHHhHHHHHHHHhcCCCcEEEECC-CchHHHHHHHcCCcEEEEe-cCchhHHHHHHH
Q 001939 83 ---ALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVT-NFSWDFIYAEYV 157 (993)
Q Consensus 83 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~laA~~~gIP~V~i~-~~~~~~~~~~y~ 157 (993)
............+... ....+....+++++++||+||+|. .+.+.++|+.++||++.+. .+.....+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~ 171 (398)
T 3oti_A 96 VATRPAIDLEEWGVQIAAV----NRPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRTRGMHRSI 171 (398)
T ss_dssp GGGSCCCSGGGGHHHHHHH----HGGGHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCTTCCCTTHHHHH
T ss_pred ccCChhhhHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHcCCCEEEEeccCCCccchhhHH
Confidence 0000000001111111 122345667888999999999986 6668888999999999763 221100000000
Q ss_pred hhcccchHHHHHHHHhhccc----cceee-ecCCCCCCCC---CCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEE
Q 001939 158 MAAGHHHRSIVWQIAEDYSH----CEFLI-RLPGYCPMPA---FRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILN 229 (993)
Q Consensus 158 ~~~~~~~~~i~~~l~~~y~~----~d~ll-~~p~~~~~p~---~~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs 229 (993)
. .... ...+.|.. .+..+ .++.....+. ...+..+|.. .+.....++...+++++||++
T Consensus 172 ~---~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~v~v~ 238 (398)
T 3oti_A 172 A---SFLT----DLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYG------GGAVLGDRLPPVPARPEVAIT 238 (398)
T ss_dssp H---TTCH----HHHHHTTCCCCCCSEEECSSCGGGGTTSCCCSBCCCCCCCC------CCEECCSSCCCCCSSCEEEEC
T ss_pred H---HHHH----HHHHHcCCCCCCCCeEEEeCCHHHCCCCCCCCCCccccCCC------CCcCCchhhhcCCCCCEEEEE
Confidence 0 0011 11222211 11111 1111111110 0001112210 011112233334578899999
Q ss_pred cCCCCC---h----hhHHHhhCCCCcEEEE-eCCCCC----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHH
Q 001939 230 FGGQPA---G----WKLKEEYLPSGWKCLV-CGASDS----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALA 297 (993)
Q Consensus 230 ~G~~~~---~----~~ll~~l~~~~~~~vv-~G~~~~----~l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~ 297 (993)
+|+... + ..+++.+...++.+++ +|.... .+++|+++.+|. .++++|++||+||+|+|++|++||++
T Consensus 239 ~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~~~~l~~~~~~v~~~~~~-~~~~ll~~ad~~v~~~G~~t~~Eal~ 317 (398)
T 3oti_A 239 MGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLDISPLGTLPRNVRAVGWT-PLHTLLRTCTAVVHHGGGGTVMTAID 317 (398)
T ss_dssp CTTTHHHHHCGGGHHHHHHHHHTSSSEEEEECTTSCCGGGCSCCTTEEEESSC-CHHHHHTTCSEEEECCCHHHHHHHHH
T ss_pred cCCCccccCcHHHHHHHHHHHHcCCCEEEEEECCcChhhhccCCCcEEEEccC-CHHHHHhhCCEEEECCCHHHHHHHHH
Confidence 999843 1 1233344344676654 454332 268999999998 68899999999999999999999999
Q ss_pred cCCcEEEEeCCCCCChHHHH--HHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc---------CCCCHHHHHHHH
Q 001939 298 YKLPFVFVRRDYFNEEPFLR--NMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHI 366 (993)
Q Consensus 298 ~GvP~l~ip~~~~~EQ~~na--~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~ga~~~a~~ 366 (993)
+|+|+|++| .+.||..|+ +++++.|+|+.++..+.+++.+. ++++++.... ...+++.++++.
T Consensus 318 ~G~P~v~~p--~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~----~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (398)
T 3oti_A 318 AGIPQLLAP--DPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR----RLIGDESLRTAAREVREEMVALPTPAETVRR 391 (398)
T ss_dssp HTCCEEECC--CTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH----HHHHCHHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred hCCCEEEcC--CCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----HHHcCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999998 567999999 99999999999998877766665 7777663211 467788888888
Q ss_pred HHHHH
Q 001939 367 LQETA 371 (993)
Q Consensus 367 i~~~~ 371 (993)
|++++
T Consensus 392 l~~l~ 396 (398)
T 3oti_A 392 IVERI 396 (398)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88774
No 29
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.90 E-value=1.1e-23 Score=230.04 Aligned_cols=167 Identities=14% Similarity=0.166 Sum_probs=131.2
Q ss_pred ceEEEEcCccccc----cccccc-ccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccc
Q 001939 496 EIFVARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSE 570 (993)
Q Consensus 496 ~~~~~~APGRv~L----~GeH~d-y~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~ 570 (993)
.++.++||||||| +|+|.| |++..++.++|+++.++ +++ +.+ +.+.+
T Consensus 3 ~m~~~~aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v-~~~--~~~---------------------i~i~~---- 54 (271)
T 2v8p_A 3 HMIKVLSPAKINLGLWVLGRLPSGYHEILTLYQEIPFYDEI-YIR--EGV---------------------LRVET---- 54 (271)
T ss_dssp CCEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEE-EEE--ESS---------------------CEEEE----
T ss_pred ceEEEeecceEEeeEeecccCCCCCceEEEEEEEcCcccEE-EEe--CCe---------------------EEEEe----
Confidence 3678899999999 899999 99999999999999999 887 322 12211
Q ss_pred cCCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHH
Q 001939 571 LSNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSA 650 (993)
Q Consensus 571 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSA 650 (993)
..+ ...|.|+++.++..+.+..|.. .|++|.+.++||.++||||||
T Consensus 55 ------------~~~--------------------~~~~~nlv~~a~~~~~~~~g~~--~g~~i~i~~~IP~g~GLGsSs 100 (271)
T 2v8p_A 55 ------------NIG--------------------IPQEENLVYKGLREFERITGIE--INYSIFIQKNIPPGAGLGGGS 100 (271)
T ss_dssp ------------SSC--------------------CCTTTCHHHHHHHHHHHHHCCC--CCEEEEEECCSCTTSSSCHHH
T ss_pred ------------CCC--------------------CCCCchHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCCCCCchHH
Confidence 010 1247899999998887777764 689999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEE
Q 001939 651 SVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGI 730 (993)
Q Consensus 651 A~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~ 730 (993)
|.++|++.|++++++.++++++|+++|.++|. |..++++||. ++...+. +..+++++|.++.++++
T Consensus 101 a~a~a~l~al~~l~~~~l~~~el~~la~~~e~----------dv~~~~~gg~---~~~~g~g-~~~~~l~~~~~~~~vl~ 166 (271)
T 2v8p_A 101 SNLAVVLKKVNELLGSPLSEEELRELVGSISA----------DAPFFLLGKS---AIGRGKG-EVLEPVETEISGKITLV 166 (271)
T ss_dssp HHHHHHHHHHHHHTTCCSCHHHHHHHHHHHCT----------TTGGGGTCSE---EEEETTT-TEEEECCCCCCSEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC----------CHHHHhcCCe---EEEEEcC-CEEEEccCCCCcEEEEE
Confidence 99999999999999999999999999999982 6678888884 3333222 22356664448999999
Q ss_pred eCCCcccc
Q 001939 731 DSGIRHSV 738 (993)
Q Consensus 731 dSgv~~~~ 738 (993)
+++++.+|
T Consensus 167 ~p~~~~sT 174 (271)
T 2v8p_A 167 IPQVSSST 174 (271)
T ss_dssp ECSSCCCH
T ss_pred eCCCCCCH
Confidence 98765443
No 30
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.90 E-value=4e-23 Score=237.21 Aligned_cols=339 Identities=12% Similarity=0.059 Sum_probs=197.8
Q ss_pred cEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeee-eccCCcc--------cc-Ccc
Q 001939 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKV-LLDCGAV--------QA-DAL 84 (993)
Q Consensus 15 ~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~-~~~~g~~--------~~-~~~ 84 (993)
+|||+|++. .+.||++++++|+++|+++||+|+|++... + ...+...++.+... ..+.... .. ...
T Consensus 1 ~MrIl~~~~-~~~gh~~~~~~la~~L~~~GheV~v~~~~~-~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (391)
T 3tsa_A 1 HMRVLVVPL-PYPTHLMAMVPLCWALQASGHEVLIAAPPE-L--QATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAF 76 (391)
T ss_dssp CCEEEEECC-SCHHHHHTTHHHHHHHHHTTCEEEEEECHH-H--HHHHHHBTCEEEEC--------------CCSCCGGG
T ss_pred CcEEEEEcC-CCcchhhhHHHHHHHHHHCCCEEEEecChh-h--HHHHHhCCCceeeecCCccchhhhhhhccccccccc
Confidence 368887654 489999999999999999999999998642 1 11010001111111 1000000 00 000
Q ss_pred ccChHHHHHH-HHHHh---hccHHHhHHHHHHHHhcCCCcEEEECC-CchHHHHHHHcCCcEEEEecCchhHHHHHHHhh
Q 001939 85 TVDRLASLEK-YSETA---VAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWDFIYAEYVMA 159 (993)
Q Consensus 85 ~~~~~~~~~~-~~~~~---~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~~~~~~~~y~~~ 159 (993)
.......... +.... ....+.++....+++++++||+||+|. .+.+.++|+.+|||++.+...... ....+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~~~~-~~~~~~~- 154 (391)
T 3tsa_A 77 GQRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCALIGRVLGGLLDLPVVLHRWGVDP-TAGPFSD- 154 (391)
T ss_dssp GCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHTTCCEEEECCSCCC-TTTHHHH-
T ss_pred ccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCEEEeCcchhHHHHHHHHhCCCEEEEecCCcc-ccccccc-
Confidence 0000011111 11110 001111256667888999999999996 566788899999999987321100 0000000
Q ss_pred cccchHHHHHHHHhhcccc-----ceeee-cCCCCCCCC--C-CceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEc
Q 001939 160 AGHHHRSIVWQIAEDYSHC-----EFLIR-LPGYCPMPA--F-RDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNF 230 (993)
Q Consensus 160 ~~~~~~~i~~~l~~~y~~~-----d~ll~-~p~~~~~p~--~-~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~ 230 (993)
....++...+ ..|... +..+. .+.....+. . ..++.+|... +....+++..++++++|++++
T Consensus 155 --~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~~vlv~~ 225 (391)
T 3tsa_A 155 --RAHELLDPVC-RHHGLTGLPTPELILDPCPPSLQASDAPQGAPVQYVPYNG------SGAFPAWGAARTSARRVCICM 225 (391)
T ss_dssp --HHHHHHHHHH-HHTTSSSSCCCSEEEECSCGGGSCTTSCCCEECCCCCCCC------CEECCGGGSSCCSSEEEEEEC
T ss_pred --hHHHHHHHHH-HHcCCCCCCCCceEEEecChhhcCCCCCccCCeeeecCCC------CcCCCchhhcCCCCCEEEEEc
Confidence 0011122222 222111 22222 222111110 0 0111222110 111112333345778999999
Q ss_pred CCCCC---h-hhHHHh---hCC-CCcEEEEeCCCC-C----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHH
Q 001939 231 GGQPA---G-WKLKEE---YLP-SGWKCLVCGASD-S----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALA 297 (993)
Q Consensus 231 G~~~~---~-~~ll~~---l~~-~~~~~vv~G~~~-~----~l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~ 297 (993)
|+... . ..++.. ... +++.+++.+... . .+++|+++.+|.+ .+++|++||+||+|+|++|++||++
T Consensus 226 G~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~l~~~~~~v~~~~~~~-~~~ll~~ad~~v~~~G~~t~~Ea~~ 304 (391)
T 3tsa_A 226 GRMVLNATGPAPLLRAVAAATELPGVEAVIAVPPEHRALLTDLPDNARIAESVP-LNLFLRTCELVICAGGSGTAFTATR 304 (391)
T ss_dssp CHHHHHHHCSHHHHHHHHHHHTSTTEEEEEECCGGGGGGCTTCCTTEEECCSCC-GGGTGGGCSEEEECCCHHHHHHHHH
T ss_pred CCCCCcccchHHHHHHHHHhccCCCeEEEEEECCcchhhcccCCCCEEEeccCC-HHHHHhhCCEEEeCCCHHHHHHHHH
Confidence 98743 1 222222 122 367666554322 1 2588999999875 4688999999999999999999999
Q ss_pred cCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEec--CCCChhhHHHHHHHHHhCCCCcc---------CCCCHHHHHHHH
Q 001939 298 YKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIR--RDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHI 366 (993)
Q Consensus 298 ~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~--~~~~~~~l~~~l~~ll~~~~~~~---------~~~~ga~~~a~~ 366 (993)
+|+|+|++| .+.||..|++.+++.|+|+.+.. ++.+++.|.++|.++++++.... ...+++.++++.
T Consensus 305 ~G~P~v~~p--~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (391)
T 3tsa_A 305 LGIPQLVLP--QYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLSDEITAMPHPAALVRT 382 (391)
T ss_dssp TTCCEEECC--CSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTCTHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred hCCCEEecC--CcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 999999998 57899999999999999999988 77888999999999998874221 466788888888
Q ss_pred HHHHH
Q 001939 367 LQETA 371 (993)
Q Consensus 367 i~~~~ 371 (993)
|++++
T Consensus 383 i~~~~ 387 (391)
T 3tsa_A 383 LENTA 387 (391)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 88764
No 31
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.90 E-value=8.1e-23 Score=234.20 Aligned_cols=334 Identities=11% Similarity=0.021 Sum_probs=198.8
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccC--Ccccc------CccccC
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDC--GAVQA------DALTVD 87 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~--g~~~~------~~~~~~ 87 (993)
|+|+++ ++.+.||++++++|+++|+++||+|+|++.... ...+...++.+....... +.... ......
T Consensus 1 MrIl~~-~~~~~Gh~~p~~~la~~L~~~Gh~V~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (384)
T 2p6p_A 1 MRILFV-AAGSPATVFALAPLATAARNAGHQVVMAANQDM---GPVVTGVGLPAVATTDLPIRHFITTDREGRPEAIPSD 76 (384)
T ss_dssp CEEEEE-CCSSHHHHHHHHHHHHHHHHTTCEEEEEECGGG---HHHHHHTTCCEEESCSSCHHHHHHBCTTSCBCCCCCS
T ss_pred CEEEEE-eCCccchHhHHHHHHHHHHHCCCEEEEEeCHHH---HHHHHhCCCEEEEeCCcchHHHHhhhcccCccccCcc
Confidence 466665 567789999999999999999999999986531 111110112222211110 00000 000010
Q ss_pred hHHHHHHH-HHHhhccHHHhHHHHHHHHhcCCCcEEEECC-CchHHHHHHHcCCcEEEEec-CchhHHHHHHHhhcccch
Q 001939 88 RLASLEKY-SETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTN-FSWDFIYAEYVMAAGHHH 164 (993)
Q Consensus 88 ~~~~~~~~-~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~-~~~~~~~~~y~~~~~~~~ 164 (993)
. .....+ ..++.......+....+++++++||+||+|. .+++..+|+.+|||++.+.. ..+...+..+..
T Consensus 77 ~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~~~~~~~~~~------ 149 (384)
T 2p6p_A 77 P-VAQARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVDADGIHPGAD------ 149 (384)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCTTTHHHHH------
T ss_pred h-HHHHHHHHHHHHhhHHHHHHHHHHHHhccCCcEEEECcchhhHHHHHHhcCCCEEEeccCCcccchhhHHHH------
Confidence 0 111111 1111101122345566778889999999997 56777889999999998732 111000000000
Q ss_pred HHHHHHHHhhccc-----cceeee-cCCCCCCC-CCC--ceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCC
Q 001939 165 RSIVWQIAEDYSH-----CEFLIR-LPGYCPMP-AFR--DVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPA 235 (993)
Q Consensus 165 ~~i~~~l~~~y~~-----~d~ll~-~p~~~~~p-~~~--~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~ 235 (993)
....++...+.. ++..+. .+.....+ ..+ .+..+|.. .+. +..+++...+++++||+++|+.+.
T Consensus 150 -~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~l~~~~~~~~v~v~~Gs~~~ 222 (384)
T 2p6p_A 150 -AELRPELSELGLERLPAPDLFIDICPPSLRPANAAPARMMRHVATS--RQC----PLEPWMYTRDTRQRVLVTSGSRVA 222 (384)
T ss_dssp -HHTHHHHHHTTCSSCCCCSEEEECSCGGGSCTTSCCCEECCCCCCC--CCC----BCCHHHHCCCSSCEEEEECSSSSS
T ss_pred -HHHHHHHHHcCCCCCCCCCeEEEECCHHHCCCCCCCCCceEecCCC--CCC----CCCchhhcCCCCCEEEEECCCCCc
Confidence 011112222211 222221 21111111 011 12222211 011 112233222466899999999764
Q ss_pred h----------hhHHHhhCCCCcEEEE-eCCCCC----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCC
Q 001939 236 G----------WKLKEEYLPSGWKCLV-CGASDS----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKL 300 (993)
Q Consensus 236 ~----------~~ll~~l~~~~~~~vv-~G~~~~----~l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~Gv 300 (993)
. ..+++.+...++.+++ +|.... .+++|+++ +|.+ +.++|++||+||+|||++|++||+++|+
T Consensus 223 ~~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~~l~~~~~~v~~-~~~~-~~~~l~~~d~~v~~~G~~t~~Ea~~~G~ 300 (384)
T 2p6p_A 223 KESYDRNFDFLRGLAKDLVRWDVELIVAAPDTVAEALRAEVPQARV-GWTP-LDVVAPTCDLLVHHAGGVSTLTGLSAGV 300 (384)
T ss_dssp CCSSCCCCTTHHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTSEE-ECCC-HHHHGGGCSEEEECSCTTHHHHHHHTTC
T ss_pred cccccccHHHHHHHHHHHhcCCcEEEEEeCCCCHHhhCCCCCceEE-cCCC-HHHHHhhCCEEEeCCcHHHHHHHHHhCC
Confidence 2 1234444344676665 453211 15789999 9985 6799999999999999999999999999
Q ss_pred cEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc---------CCCCHHHHHHHHHHHHH
Q 001939 301 PFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHILQETA 371 (993)
Q Consensus 301 P~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~ga~~~a~~i~~~~ 371 (993)
|+|++| .+.||..|++++++.|+|+.+..++++++.+.++|+++++++.... ...+|+++++.+|+.++
T Consensus 301 P~v~~p--~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 378 (384)
T 2p6p_A 301 PQLLIP--KGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAKDTYARRAQDLSREISGMPLPATVVTALEQLA 378 (384)
T ss_dssp CEEECC--CSHHHHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred CEEEcc--CcccchHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 999999 5789999999999999999998888889999999999998863211 45678888888888774
No 32
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.90 E-value=2.2e-22 Score=234.12 Aligned_cols=344 Identities=16% Similarity=0.110 Sum_probs=201.7
Q ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeecc--CCccccCccccChHH
Q 001939 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLD--CGAVQADALTVDRLA 90 (993)
Q Consensus 13 m~~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~--~g~~~~~~~~~~~~~ 90 (993)
|..++|+|+ ++.+.||++++++|+++|+++||+|+|++.... ...+...++.+...... .+.........+...
T Consensus 5 m~m~kIl~~-~~~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (430)
T 2iyf_A 5 TTPAHIAMF-SIAAHGHVNPSLEVIRELVARGHRVTYAIPPVF---ADKVAATGPRPVLYHSTLPGPDADPEAWGSTLLD 80 (430)
T ss_dssp ---CEEEEE-CCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGG---HHHHHTTSCEEEECCCCSCCTTSCGGGGCSSHHH
T ss_pred cccceEEEE-eCCCCccccchHHHHHHHHHCCCeEEEEeCHHH---HHHHHhCCCEEEEcCCcCccccccccccchhhHH
Confidence 444677765 567799999999999999999999999987642 11111112233221111 111000000011111
Q ss_pred HHHHHHHHhhccHHHhHHHHHHHHhcCCCcEEEECC-CchHHHHHHHcCCcEEEEecCc--hhHHHH----HHHhhc--c
Q 001939 91 SLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVTNFS--WDFIYA----EYVMAA--G 161 (993)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~--~~~~~~----~y~~~~--~ 161 (993)
.+..+.. .....+....+++++++||+||+|+ .+++..+|+.+|||++.+.... |..... .+.... .
T Consensus 81 ~~~~~~~----~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (430)
T 2iyf_A 81 NVEPFLN----DAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVAEPMWREPRQT 156 (430)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHTTSCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCTTHHHHTHHHHHHHHHHS
T ss_pred HHHHHHH----HHHHHHHHHHHHhhccCCCEEEECCccHHHHHHHHHcCCCEEEEecccccccccccccccchhhhhccc
Confidence 1111111 1223345567788999999999997 4678888999999999874322 210000 000000 0
Q ss_pred cchHH---HHHHHHhhc----------cccceeeec-CCCCCCC--CC-Cc-eeecCcccccCCcChHHHHHHhCCCCCC
Q 001939 162 HHHRS---IVWQIAEDY----------SHCEFLIRL-PGYCPMP--AF-RD-VIDVPLVVRRLHKSRKEVRKELGIEDDV 223 (993)
Q Consensus 162 ~~~~~---i~~~l~~~y----------~~~d~ll~~-p~~~~~p--~~-~~-v~~vp~~~~~~~~~~~~~r~~l~~~~~~ 223 (993)
..... ....+...+ ..++.++.. +.....+ .+ ++ +..+|+.... +.+..++....+++
T Consensus 157 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~vG~~~~~----~~~~~~~~~~~~~~ 232 (430)
T 2iyf_A 157 ERGRAYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQPHADRVDEDVYTFVGACQGD----RAEEGGWQRPAGAE 232 (430)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCHHHHHHCCSSEEECSCGGGSTTGGGSCTTTEEECCCCC---------CCCCCCCTTCS
T ss_pred hHHHHHHHHHHHHHHHhCCCCCHHHHhcCCCcEEEeCcHHhCCCcccCCCccEEEeCCcCCC----CCCCCCCccccCCC
Confidence 00000 011111111 123333321 1111110 11 23 5566642110 00000111112467
Q ss_pred cEEEEEcCCCCCh-hh----HHHhhCC-CCcEE-EEeCCCCC-----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhH
Q 001939 224 KLLILNFGGQPAG-WK----LKEEYLP-SGWKC-LVCGASDS-----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGT 291 (993)
Q Consensus 224 ~~Vlvs~G~~~~~-~~----ll~~l~~-~~~~~-vv~G~~~~-----~l~~nv~~~~~~~~~pdlL~~adl~It~~G~~T 291 (993)
++||+++|+.... .+ +++.+.. +++.+ +++|.... .+++|+++.+|.+++ ++|++||+||+|+|++|
T Consensus 233 ~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~~~~l~~~~~~v~~~~~~~~~-~~l~~ad~~v~~~G~~t 311 (430)
T 2iyf_A 233 KVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDWVPQL-AILRQADLFVTHAGAGG 311 (430)
T ss_dssp EEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC---CGGGGCSCCTTEEEESSCCHH-HHHTTCSEEEECCCHHH
T ss_pred CeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCCChHHhccCCCCeEEEecCCHH-HHhhccCEEEECCCccH
Confidence 8999999998732 22 2333433 36665 46776532 257899999998876 89999999999999999
Q ss_pred HHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc---------CCCCHHHH
Q 001939 292 VSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEV 362 (993)
Q Consensus 292 v~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~ga~~ 362 (993)
++||+++|+|+|++| ...||..|++.+++.|+|+.+..++++++.|.++|.++++++.... ...++..+
T Consensus 312 ~~Ea~~~G~P~i~~p--~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 389 (430)
T 2iyf_A 312 SQEGLATATPMIAVP--QAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRR 389 (430)
T ss_dssp HHHHHHTTCCEEECC--CSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhCCCEEECC--CccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCcHHH
Confidence 999999999999998 4579999999999999999998888888999999999998763211 23468888
Q ss_pred HHHHHHHHH
Q 001939 363 AAHILQETA 371 (993)
Q Consensus 363 ~a~~i~~~~ 371 (993)
+++.|++++
T Consensus 390 ~~~~i~~~~ 398 (430)
T 2iyf_A 390 AADLIEAEL 398 (430)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHHh
Confidence 888888765
No 33
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.89 E-value=1e-22 Score=235.16 Aligned_cols=343 Identities=15% Similarity=0.129 Sum_probs=201.5
Q ss_pred CcEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeec--cCCcc-------ccCcc
Q 001939 14 KHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLL--DCGAV-------QADAL 84 (993)
Q Consensus 14 ~~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~--~~g~~-------~~~~~ 84 (993)
.+|+|+|+. +.+.||++++++|+++|+++||+|+|++... + ...+...++.+..... ..++. .....
T Consensus 19 ~~MrIl~~~-~~~~Gh~~~~~~la~~L~~~GheV~v~~~~~-~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 3otg_A 19 RHMRVLFAS-LGTHGHTYPLLPLATAARAAGHEVTFATGEG-F--AGTLRKLGFEPVATGMPVFDGFLAALRIRFDTDSP 94 (412)
T ss_dssp CSCEEEEEC-CSSHHHHGGGHHHHHHHHHTTCEEEEEECGG-G--HHHHHHTTCEEEECCCCHHHHHHHHHHHHHSCSCC
T ss_pred ceeEEEEEc-CCCcccHHHHHHHHHHHHHCCCEEEEEccHH-H--HHHHHhcCCceeecCcccccchhhhhhhhhcccCC
Confidence 457887664 6688999999999999999999999998753 1 1111111222222110 00000 00000
Q ss_pred -ccChHHHHHHHHHHhhcc-HHHhHHHHHHHHhcCCCcEEEECC-CchHHHHHHHcCCcEEEEe-cCc-hhHHHHHHHhh
Q 001939 85 -TVDRLASLEKYSETAVAP-RKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRSVCVT-NFS-WDFIYAEYVMA 159 (993)
Q Consensus 85 -~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~laA~~~gIP~V~i~-~~~-~~~~~~~y~~~ 159 (993)
..+.......+...+... ....+....+++++++||+||+|. .+.+.++|+.++||+|.+. ++. |.......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~~~~~~~~~~~~--- 171 (412)
T 3otg_A 95 EGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYGAGLAALKAGIPTICHGVGRDTPDDLTRSI--- 171 (412)
T ss_dssp TTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCSCCCCSHHHHHH---
T ss_pred ccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhHHHHHHHHcCCCEEEecccccCchhhhHHH---
Confidence 000111111111111101 122345667788999999999996 5567788899999998873 221 21111110
Q ss_pred cccchHHHHHHHHhhc----------cccceeee-cCCCCCCCC-CCceeecCcccccCCcChHHHHHH-hCCCCCCcEE
Q 001939 160 AGHHHRSIVWQIAEDY----------SHCEFLIR-LPGYCPMPA-FRDVIDVPLVVRRLHKSRKEVRKE-LGIEDDVKLL 226 (993)
Q Consensus 160 ~~~~~~~i~~~l~~~y----------~~~d~ll~-~p~~~~~p~-~~~v~~vp~~~~~~~~~~~~~r~~-l~~~~~~~~V 226 (993)
...+. .....+ ..++..+. ++.....+. .....+.|+...... .+.+.+++ ...++++++|
T Consensus 172 ----~~~~~-~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v 245 (412)
T 3otg_A 172 ----EEEVR-GLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEPEFRARPRRHELRPVPFA-EQGDLPAWLSSRDTARPLV 245 (412)
T ss_dssp ----HHHHH-HHHHHTTCCCCSSCCGGGGCCEEECSCGGGSCHHHHTCTTEEECCCCCCC-CCCCCCGGGGGSCTTSCEE
T ss_pred ----HHHHH-HHHHHcCCCCCcccccCCCCeEEeeCCHHhcCCcccCCCCcceeeccCCC-CCCCCCCccccccCCCCEE
Confidence 01111 111111 11222222 221111000 000111221111110 01111222 1234578899
Q ss_pred EEEcCCCCCh-hhH----HHhhCCCCcEEE-EeCCCC-C----CCCCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHH
Q 001939 227 ILNFGGQPAG-WKL----KEEYLPSGWKCL-VCGASD-S----QLPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEA 295 (993)
Q Consensus 227 lvs~G~~~~~-~~l----l~~l~~~~~~~v-v~G~~~-~----~l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Ea 295 (993)
++++|+.... .++ ++.+...++.++ ++|... . .+++|+++.+|. .++++|++||+||+++|++|++||
T Consensus 246 lv~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~l~~~~~~v~~~~~~-~~~~~l~~ad~~v~~~g~~t~~Ea 324 (412)
T 3otg_A 246 YLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGLGEVPANVRLESWV-PQAALLPHVDLVVHHGGSGTTLGA 324 (412)
T ss_dssp EEECTTTTCSCHHHHHHHHHHHHTSSSEEEEECCSSCCCTTCCCCCTTEEEESCC-CHHHHGGGCSEEEESCCHHHHHHH
T ss_pred EEEcCCCCcCcHHHHHHHHHHHHcCCCEEEEEECCCCChhhhccCCCcEEEeCCC-CHHHHHhcCcEEEECCchHHHHHH
Confidence 9999998532 222 233333456554 455443 1 157899999999 689999999999999999999999
Q ss_pred HHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc---------CCCCHHHHHHHH
Q 001939 296 LAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE---------GGINGGEVAAHI 366 (993)
Q Consensus 296 l~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~---------~~~~ga~~~a~~ 366 (993)
+++|+|+|++|. ..||..|++.+++.|+|+.+...+++++.|.++|.++++++.... ....++.++++.
T Consensus 325 ~a~G~P~v~~p~--~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (412)
T 3otg_A 325 LGAGVPQLSFPW--AGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYRAGARAVAAEIAAMPGPDEVVRL 402 (412)
T ss_dssp HHHTCCEEECCC--STTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSCCHHHHHTT
T ss_pred HHhCCCEEecCC--chhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 999999999984 479999999999999999999888889999999999998873211 244577888888
Q ss_pred HHHHHc
Q 001939 367 LQETAI 372 (993)
Q Consensus 367 i~~~~~ 372 (993)
|++++.
T Consensus 403 ~~~l~~ 408 (412)
T 3otg_A 403 LPGFAS 408 (412)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 877753
No 34
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.89 E-value=3.3e-22 Score=221.59 Aligned_cols=289 Identities=15% Similarity=0.174 Sum_probs=205.0
Q ss_pred eEEEEcCccccc----cccccc-ccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEeccccc
Q 001939 497 IFVARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSEL 571 (993)
Q Consensus 497 ~~~~~APGRv~L----~GeH~d-y~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~ 571 (993)
.+.++||+|+|| .|.+.| |+.-..+-++|+.+-++.+++.++.. +.+...
T Consensus 5 ~~~~~apAKiNL~L~v~~~r~DGyh~l~s~~~al~l~D~l~~~~~~~~~---------------------i~~~g~---- 59 (306)
T 3pyf_A 5 SVTVRVPGKVNLYLAVGDRREDGYHELTTVFHAVSLVDEVTVRNADVLS---------------------LELVGE---- 59 (306)
T ss_dssp CEEEEEEEEEEEEEEECCCCTTSCCCEEEEEEEEEEEEEEEEEECSSCE---------------------EEEEST----
T ss_pred cEEEEecceEEeecccCCcCCCCCcchheeEEEcccCCEEEEEECCCCE---------------------EEEeCC----
Confidence 367899999999 999999 88888888999999888888764321 222110
Q ss_pred CCCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHH
Q 001939 572 SNRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSAS 651 (993)
Q Consensus 572 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA 651 (993)
. ..++ + .+..|+++.++..+++.+|.. .|++|.+.++||.++|||||||
T Consensus 60 ------~---~~~~-------------------p-~~~~Nlv~~A~~~l~~~~g~~--~~~~i~i~~~iP~~~GLGsssa 108 (306)
T 3pyf_A 60 ------G---ADQL-------------------P-TDERNLAWQAAELMAEHVGRA--PDVSIMIDKSIPVAGGMAGGSA 108 (306)
T ss_dssp ------T---GGGS-------------------C-CSTTSHHHHHHHHHHHHTTCC--CCEEEEEEECSCTTSSSCHHHH
T ss_pred ------C---ccCC-------------------C-CCCccHHHHHHHHHHHHhCCC--CCeEEEEecCCCCCCCcchHHH
Confidence 0 0011 0 123689998988888777765 5999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEe
Q 001939 652 VEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGID 731 (993)
Q Consensus 652 ~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~d 731 (993)
.++|++.|++.+++.++++++|+++|.++| .|..++++||. .+...+. +...+++.++++.+++++
T Consensus 109 ~a~a~l~al~~~~~~~l~~~~l~~la~~~~----------~Dv~~~~~Gg~---~~~~g~g-e~~~~l~~~~~~~~vl~~ 174 (306)
T 3pyf_A 109 DAAAVLVAMNSLWELNVPRRDLRMLAARLG----------SDVPFALHGGT---ALGTGRG-EELATVLSRNTFHWVLAF 174 (306)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHC----------TTHHHHHHBSE---EEECSSS-SCCEEECCSSCEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHhC----------CCCceeecCce---EEEEeeC-CeEEEccCCCCcEEEEEE
Confidence 999999999999999999999999999987 28889999994 3333333 223667777789999999
Q ss_pred CCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhh
Q 001939 732 SGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAK 811 (993)
Q Consensus 732 Sgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~ 811 (993)
+++..+|.. .| +.+ . ..++ . .
T Consensus 175 P~~~vsT~~-a~--------------~~l----------------------------~------~~~~-------~---~ 195 (306)
T 3pyf_A 175 ADSGLLTSA-VY--------------NEL----------------------------D------RLRE-------V---G 195 (306)
T ss_dssp CSSCCCHHH-HH--------------HHH----------------------------H------HHHH-------H---S
T ss_pred CCCCCcHHH-HH--------------Hhh----------------------------h------hhcc-------c---c
Confidence 987766531 00 000 0 0000 0 0
Q ss_pred cCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhhhhc
Q 001939 812 NIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSAC 891 (993)
Q Consensus 812 ~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~slr~~ 891 (993)
..+ + ..++..+..+|.++ |++.||++|...-+.++.
T Consensus 196 ~~~-----------------------------------~----~~~~~~~~~al~~~----d~~~l~~~l~n~le~~~~- 231 (306)
T 3pyf_A 196 DPP-----------------------------------R----LGEPGPVLAALAAG----DPDQLAPLLGNEMQAAAV- 231 (306)
T ss_dssp CCC-----------------------------------C----CCCHHHHHHHHHHT----CHHHHGGGCEETTHHHHH-
T ss_pred ccc-----------------------------------c----ccCHHHHHHHHHhC----CHHHHHHHhccchHHHHH-
Confidence 000 0 01356777888875 899999988432233332
Q ss_pred CCCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCcEEee--
Q 001939 892 GLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG-- 969 (993)
Q Consensus 892 ~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~-- 969 (993)
..+|+++++++.+++ .|++|++|||+| +|++++.++.. ..+++.+.+. +.|....+|..
T Consensus 232 -~~~P~l~~i~~~~~~-----------~Ga~ga~mSGsG--ptvfal~~~~~----~a~~~~~~l~-~~g~~~~v~~~~~ 292 (306)
T 3pyf_A 232 -SLDPALARALRAGVE-----------AGALAGIVSGSG--PTCAFLCTSAS----SAIDVGAQLS-GAGVCRTVRVATG 292 (306)
T ss_dssp -HHCTHHHHHHHHHHH-----------TTCSEEEECTTS--SEEEEEESSHH----HHHHHHHHHH-HTTSSSEEEEEEE
T ss_pred -HhChHHHHHHHHHHh-----------cCCCEEEEcCcc--hhheEEeCCHH----HHHHHHHHHH-hcCCcceEEEeec
Confidence 258999999999987 699999999998 89988876532 3455655555 44666777775
Q ss_pred cCCCCcce
Q 001939 970 SSPGAGKF 977 (993)
Q Consensus 970 ~~~G~~~~ 977 (993)
+..|+++.
T Consensus 293 ~~~Ga~v~ 300 (306)
T 3pyf_A 293 PVPGARVV 300 (306)
T ss_dssp CCBCSEEC
T ss_pred CCCCCEEe
Confidence 68887664
No 35
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.88 E-value=3.5e-22 Score=223.81 Aligned_cols=303 Identities=14% Similarity=0.078 Sum_probs=194.1
Q ss_pred EEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCCc
Q 001939 498 FVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGPT 577 (993)
Q Consensus 498 ~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 577 (993)
..++||+||+|+|+|.||+++.+||+.....+++. .+..+-++ +. +. ++.. ..
T Consensus 10 ~~~~ap~nialiky~gk~~~~~~lP~~dslglal~-~~~~~~~v---------------------~~-~~--~~~~--~~ 62 (332)
T 3qt5_A 10 GKARAHTNIALIKYWGKADETYIIPMNNSLSVTLD-RFYTETKV---------------------TF-DP--DFTE--DC 62 (332)
T ss_dssp EEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE-EEEEEEEE---------------------EE-ET--TCSS--CE
T ss_pred EEEEecCcEEEEeeeeeccCCccccCCCceEEEec-CCCCeeEE---------------------EE-cC--CCCc--cE
Confidence 46899999999999999999999999888777765 22322111 10 10 0000 11
Q ss_pred eeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHH
Q 001939 578 FDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM 657 (993)
Q Consensus 578 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~ 657 (993)
+.++ . .....+|.|++..++..+.+..+.. .|++|.+.++||.++|||||||..+|++
T Consensus 63 ~~i~--g------------------~~~~~~~~n~v~~~~~~~~~~~~~~--~~~~i~~~~~iP~~~GLgSSaa~~~a~~ 120 (332)
T 3qt5_A 63 LILN--G------------------NEVNAKEKEKIQNYMNIVRDLAGNR--LHARIESENYVPTAAGLASSASAYAALA 120 (332)
T ss_dssp EEET--T------------------EECCHHHHHHHHHHHHHHHHHHTCC--CEEEEEEEEESCGGGTCCCHHHHHHHHH
T ss_pred EEEC--C------------------ccCCcchHHHHHHHHHHHHHhcCCC--CCEEEEEecCCCCCCCcchHHHHHHHHH
Confidence 2211 1 0011358999999998887777764 5899999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeec-Ccc--ceeeec---CCCCeEEEEEe
Q 001939 658 SAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQ-PAE--LLGVVE---IPSHIRFWGID 731 (993)
Q Consensus 658 ~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~-~~~--~~~~v~---~p~~~~~ll~d 731 (993)
.|++.++|.++++++|+++|.++|. |-.++++||. +..... ... +..+++ .+++++++++.
T Consensus 121 ~a~~~l~~~~l~~~el~~la~~~~g----------~~~~~~~GG~---~~~~~g~~~~~~~~~~l~~~~~~~~l~~vv~v 187 (332)
T 3qt5_A 121 AACNEALSLNLSDTDLSRLARRGSG----------SASRSIFGGF---AEWEKGHDDLTSYAHGINSNGWEKDLSMIFVV 187 (332)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHCG----------GGGGGGSCSE---EEEECCSSTTTCEEEEECCTTGGGGEEEEEEC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHhcC----------CchhhhcCCe---EEEecCCCCccceeeecccccCCCCcEEEEEE
Confidence 9999999999999999999998753 4467889995 333221 111 113343 23578877664
Q ss_pred CCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhh
Q 001939 732 SGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAK 811 (993)
Q Consensus 732 Sgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~ 811 (993)
.....++..+ | ..+...
T Consensus 188 p~~~~~~~ss-----~-------~~~~~~--------------------------------------------------- 204 (332)
T 3qt5_A 188 INNQSKKVSS-----R-------SGMSLT--------------------------------------------------- 204 (332)
T ss_dssp CCCCCCC--C-----H-------HHHHHH---------------------------------------------------
T ss_pred EcCCCCCCch-----H-------HHHHHh---------------------------------------------------
Confidence 3322221110 0 000000
Q ss_pred cCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccchhh-HHHHHHHHHHccCChhHHHHHHHHHHH----hhh
Q 001939 812 NIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENF-RVKAFKALLTAAASDDQLTSLGELLYQ----CHY 886 (993)
Q Consensus 812 ~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~-Rv~~~~~al~~~~~~~~l~~lG~Lm~~----sH~ 886 (993)
++... ...+.+.+.. |+..++.+|.++ |++.||++|.+ -|+
T Consensus 205 -~~~s~-----------------------------~~~~~v~~~~~~~~~l~~Al~~~----D~~~l~~~~~~d~~~lh~ 250 (332)
T 3qt5_A 205 -RDTSR-----------------------------FYQYWLDHVDEDLNEAKEAVKNQ----DFQRLGEVIEANGLRMHA 250 (332)
T ss_dssp -HHHCT-----------------------------THHHHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHH
T ss_pred -hhcCh-----------------------------hHHHHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHH
Confidence 00000 0011122222 678899999986 99999999973 466
Q ss_pred hhhhc--C--CCCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCC
Q 001939 887 SYSAC--G--LGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGY 962 (993)
Q Consensus 887 slr~~--~--vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~ 962 (993)
.++.- . ...|+++++++.++++.. .|++|+.++|+| +||++|.+++ +++++.+++++.|.
T Consensus 251 ~~~~~~p~~~yl~p~~~~i~~~~~~~~~--------~Ga~~a~~SGaG--Ptv~~l~~~~-~a~~v~~~l~~~~~----- 314 (332)
T 3qt5_A 251 TNLGAQPPFTYLVQESYDAMAIVEQCRK--------ANLPCYFTMDAG--PNVKVLVEKK-NKQAVMEQFLKVFD----- 314 (332)
T ss_dssp HHHTSSSCCCSCCHHHHHHHHHHHHHHH--------TTCCEEEECCSS--SCEEEEEEHH-HHHHHHHHHHTTSC-----
T ss_pred HhcccCCCceeeChHHHHHHHHHHHHHh--------CCCcEEEEeCCC--CcEEEEECHH-HHHHHHHHHHHhCC-----
Confidence 66651 1 147999999999863211 689999999776 9998886542 23344444443332
Q ss_pred CCcEEee--cCCCCc
Q 001939 963 LPLIIEG--SSPGAG 975 (993)
Q Consensus 963 ~~~~~~~--~~~G~~ 975 (993)
..+++++ +++|+.
T Consensus 315 ~~~~~v~~~~g~G~~ 329 (332)
T 3qt5_A 315 ESKIIASDIISSGVE 329 (332)
T ss_dssp GGGEEEEEBCSSCCE
T ss_pred CceEEEeccccCCcE
Confidence 3467665 466664
No 36
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=99.88 E-value=4.3e-21 Score=226.52 Aligned_cols=320 Identities=14% Similarity=0.082 Sum_probs=186.9
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHC-CCeEEEEeCCCCcccccccC------CCceEEeeeeccCCccccCccccCh
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISA-GHDVHVVTGAPDFVFTSEIQ------SPRLFIRKVLLDCGAVQADALTVDR 88 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~-Gh~V~~v~~~~~~~~~~~i~------~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (993)
++|++ ++..+.||+.++++||++|.++ ||+|+|++..... +...+. .+.+.+..... +.........+.
T Consensus 7 ~~vl~-~p~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~~~-~~~~~~~~~~~~~~~i~~~~l~~--~~~~~~~~~~~~ 82 (480)
T 2vch_A 7 PHVAI-IPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGP-PSKAQRTVLDSLPSSISSVFLPP--VDLTDLSSSTRI 82 (480)
T ss_dssp CEEEE-ECCSCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSS-CC-CHHHHHC-CCTTEEEEECCC--CCCTTSCTTCCH
T ss_pred cEEEE-ecCcchhHHHHHHHHHHHHHhCCCCEEEEEECCCcc-hhhhhhhhccccCCCceEEEcCC--CCCCCCCCchhH
Confidence 34433 4678899999999999999998 9999999876421 111110 12344443211 111000000011
Q ss_pred HHHHHHHHHHhhccHHHhHHHHHHHHhc----CCC-cEEEECC-CchHHHHHHHcCCcEEEEecCchh--HHHH--H-H-
Q 001939 89 LASLEKYSETAVAPRKSILKDEVEWLNS----IKA-DLVVSDV-VPVACRAAADAGIRSVCVTNFSWD--FIYA--E-Y- 156 (993)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~----~kP-DlVVsD~-~~~a~laA~~~gIP~V~i~~~~~~--~~~~--~-y- 156 (993)
...+..... . ......+++++ .+| |+||+|. .+++..+|+.+|||.+.+...... ..+. . .
T Consensus 83 ---~~~~~~~~~-~---~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 155 (480)
T 2vch_A 83 ---ESRISLTVT-R---SNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLD 155 (480)
T ss_dssp ---HHHHHHHHH-T---THHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHH-h---hhHHHHHHHHHhccCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHHHHHHHH
Confidence 111111110 1 11222333433 578 9999998 567788999999999887443311 0000 0 0
Q ss_pred ---------------Hhhccc--------ch-H---HHHHH---HHhhccccceeeecCCCC-----------CCCCCCc
Q 001939 157 ---------------VMAAGH--------HH-R---SIVWQ---IAEDYSHCEFLIRLPGYC-----------PMPAFRD 195 (993)
Q Consensus 157 ---------------~~~~~~--------~~-~---~i~~~---l~~~y~~~d~ll~~p~~~-----------~~p~~~~ 195 (993)
.+..+. .+ + ..... ....+..+..++..++.. +.+..+.
T Consensus 156 ~~~~~~~~~~~~~~~~Pg~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~nt~~ele~~~~~~l~~~~~~~~~ 235 (480)
T 2vch_A 156 ETVSCEFRELTEPLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPP 235 (480)
T ss_dssp HHCCSCGGGCSSCBCCTTCCCBCGGGSCGGGSCTTSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHHHHHSCCTTCCC
T ss_pred hcCCCcccccCCcccCCCCCCCChHHCchhhhcCCchHHHHHHHHHHhcccCCEEEEcCHHHHhHHHHHHHHhcccCCCc
Confidence 000000 00 0 11111 112222233232212211 1111356
Q ss_pred eeecCcccccC-----CcChHHHHHHhCCCCCCcEEEEEcCCCCCh-h----hHHHhhCCCCcEEE-EeCCCC-------
Q 001939 196 VIDVPLVVRRL-----HKSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKCL-VCGASD------- 257 (993)
Q Consensus 196 v~~vp~~~~~~-----~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-~----~ll~~l~~~~~~~v-v~G~~~------- 257 (993)
+..+|+..... ...+.++.++++-.+++++|||++||.... . +++..+...+..++ +++...
T Consensus 236 v~~vGpl~~~~~~~~~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~ 315 (480)
T 2vch_A 236 VYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSY 315 (480)
T ss_dssp EEECCCCCCCSCSCC-----CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTT
T ss_pred EEEEeccccccccccCccchhHHHHHhcCCCCCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCccccccccc
Confidence 77888765422 113456777887655789999999998752 2 23334433455444 344321
Q ss_pred ------C----CCCCCe--------EEC-CCCCCHHHHHhhcC--EEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHH
Q 001939 258 ------S----QLPPNF--------IKL-PKDAYTPDFMAASD--CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFL 316 (993)
Q Consensus 258 ------~----~l~~nv--------~~~-~~~~~~pdlL~~ad--l~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~n 316 (993)
. .+|+|+ .++ +|.+.+ ++|+|++ +||||||+||++|++++|||||++| .+.||+.|
T Consensus 316 ~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~Pq~-~vL~h~~v~~fvtHgG~~S~~Eal~~GvP~i~~P--~~~DQ~~n 392 (480)
T 2vch_A 316 FDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQA-QVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWP--LYAEQKMN 392 (480)
T ss_dssp TCC--CSCGGGGSCTTHHHHTTTTEEEEESCCCHH-HHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECC--CSTTHHHH
T ss_pred cccccccchhhhcCHHHHHHhCCCeEEEeCccCHH-HHhCCCCcCeEEecccchhHHHHHHcCCCEEecc--ccccchHH
Confidence 1 268886 343 344322 8998877 8999999999999999999999999 68999999
Q ss_pred HHHH-HHcCcEEEEecC---CCChhhHHHHHHHHHhC
Q 001939 317 RNML-EFYQGGVEMIRR---DLLTGHWKPYLERAISL 349 (993)
Q Consensus 317 a~~l-~~~G~g~~l~~~---~~~~~~l~~~l~~ll~~ 349 (993)
|+++ ++.|+|+.+... .++.+.+.++|++++.+
T Consensus 393 a~~l~~~~G~g~~l~~~~~~~~~~~~l~~av~~vl~~ 429 (480)
T 2vch_A 393 AVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEG 429 (480)
T ss_dssp HHHHHHTTCCEECCCCCTTSCCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCeEEEeecccCCccCHHHHHHHHHHHhcC
Confidence 9997 799999999765 68999999999999973
No 37
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=99.88 E-value=3.1e-21 Score=224.64 Aligned_cols=326 Identities=12% Similarity=0.073 Sum_probs=198.0
Q ss_pred cEEEEEecCCCCcccHHHHHHHHHHHHHCC--CeEEEEeCCC--Ccccccc-cCCCceEEeeeeccCCccccCccccChH
Q 001939 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAG--HDVHVVTGAP--DFVFTSE-IQSPRLFIRKVLLDCGAVQADALTVDRL 89 (993)
Q Consensus 15 ~~~Il~~v~g~G~GH~~ralaLA~aL~~~G--h~V~~v~~~~--~~~~~~~-i~~~~~~~~~~~~~~g~~~~~~~~~~~~ 89 (993)
+.+|++ ++.++.||++|++.||+.|..+| +.|+|++... ..+.... ...+.+.+... ..|+........+..
T Consensus 13 ~~hvv~-~P~p~~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~~~~~~~~~~~~~~~~i~~~~i--pdglp~~~~~~~~~~ 89 (454)
T 3hbf_A 13 LLHVAV-LAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNV--HDGLPKGYVSSGNPR 89 (454)
T ss_dssp CCEEEE-ECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSSSCCCTTEEEEEC--CCCCCTTCCCCSCTT
T ss_pred CCEEEE-EcCCcccHHHHHHHHHHHHHhCCCCEEEEEEeCHHHHHhhhcccccCCCCceEEec--CCCCCCCccccCChH
Confidence 345543 57889999999999999999999 9999998642 1111111 00133444432 123221111111111
Q ss_pred HHHHHHHHHhhccHHHhHHHHH-HHHh--cCCCcEEEECC-CchHHHHHHHcCCcEEEEecCchh--HHHHH--------
Q 001939 90 ASLEKYSETAVAPRKSILKDEV-EWLN--SIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWD--FIYAE-------- 155 (993)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~-~~L~--~~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~~~--~~~~~-------- 155 (993)
.....+.... ...+.+.. ++++ ..+||+||+|. .+++..+|+.+|||.+.+...++. ..+..
T Consensus 90 ~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~ 165 (454)
T 3hbf_A 90 EPIFLFIKAM----QENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKT 165 (454)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTHHHHHHTC
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhhHHHHhhc
Confidence 1122222211 11122222 2233 25789999998 778999999999999987433211 00000
Q ss_pred ------------HHhhccc------------c-hHHHHH---HHHhhccccceeeecCCCCC--------CCCCCceeec
Q 001939 156 ------------YVMAAGH------------H-HRSIVW---QIAEDYSHCEFLIRLPGYCP--------MPAFRDVIDV 199 (993)
Q Consensus 156 ------------y~~~~~~------------~-~~~i~~---~l~~~y~~~d~ll~~p~~~~--------~p~~~~v~~v 199 (993)
++|..+. . .+.... ...+....++.++.-.+... .+.++++..|
T Consensus 166 ~~~~~~~~~~~~~iPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~~~~~~~~~v~~v 245 (454)
T 3hbf_A 166 GSKEVHDVKSIDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKFKLLLNV 245 (454)
T ss_dssp CHHHHTTSSCBCCSTTSCCBCGGGSCTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHTTSSCEEEC
T ss_pred CCCccccccccccCCCCCCcChhhCchhhccCCchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHHHHHhcCCCEEEE
Confidence 0110000 0 001111 12233334444443222111 1334678888
Q ss_pred Cccccc-C---CcChHHHHHHhCCCCCCcEEEEEcCCCCCh-h----hHHHhhCCCCcEE-EEeCCCC-----CC----C
Q 001939 200 PLVVRR-L---HKSRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKC-LVCGASD-----SQ----L 260 (993)
Q Consensus 200 p~~~~~-~---~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-~----~ll~~l~~~~~~~-vv~G~~~-----~~----l 260 (993)
||.... + ...+.++.++++..+++++|||++||.+.. . +++..+...++.+ .++|... +. .
T Consensus 246 GPl~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~~~~~lp~~~~~~~ 325 (454)
T 3hbf_A 246 GPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERT 325 (454)
T ss_dssp CCHHHHSCCSCCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSCHHHHSCTTHHHHT
T ss_pred CCcccccccccccchHHHHHHHhcCCCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcchhcCCHhHHhhc
Confidence 886532 1 122456778888767889999999998863 2 2333343334433 3455432 11 3
Q ss_pred CCCeEECCCCCCHHHHHhhcC--EEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-CcEEEEecCCCChh
Q 001939 261 PPNFIKLPKDAYTPDFMAASD--CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY-QGGVEMIRRDLLTG 337 (993)
Q Consensus 261 ~~nv~~~~~~~~~pdlL~~ad--l~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~-G~g~~l~~~~~~~~ 337 (993)
++|+++++|.+. .++|+|++ +||||||+||++|++++|||+|++| .+.||+.||+++++. |+|+.+...+++.+
T Consensus 326 ~~~~~vv~w~Pq-~~vL~h~~v~~fvtH~G~~S~~Eal~~GvP~i~~P--~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~ 402 (454)
T 3hbf_A 326 KTKGKIVAWAPQ-VEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRP--FFGDQGLNTILTESVLEIGVGVDNGVLTKE 402 (454)
T ss_dssp TTTEEEESSCCH-HHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECC--CSTTHHHHHHHHHTTSCSEEECGGGSCCHH
T ss_pred CCceEEEeeCCH-HHHHhhcCcCeEEecCCcchHHHHHHcCCCEecCc--ccccHHHHHHHHHHhhCeeEEecCCCCCHH
Confidence 568898766553 38999988 9999999999999999999999999 688999999999994 99999998889999
Q ss_pred hHHHHHHHHHhCC
Q 001939 338 HWKPYLERAISLK 350 (993)
Q Consensus 338 ~l~~~l~~ll~~~ 350 (993)
.+.++|+++++++
T Consensus 403 ~l~~av~~ll~~~ 415 (454)
T 3hbf_A 403 SIKKALELTMSSE 415 (454)
T ss_dssp HHHHHHHHHHSSH
T ss_pred HHHHHHHHHHCCC
Confidence 9999999999653
No 38
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=99.88 E-value=2.1e-21 Score=227.73 Aligned_cols=326 Identities=12% Similarity=0.114 Sum_probs=188.0
Q ss_pred cEEEEEecCCCCcccHHHHHHHHHHHHHCCCeE--EEEeCCC--CcccccccC--CCceEEeeeeccCCccccCccccCh
Q 001939 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAGHDV--HVVTGAP--DFVFTSEIQ--SPRLFIRKVLLDCGAVQADALTVDR 88 (993)
Q Consensus 15 ~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V--~~v~~~~--~~~~~~~i~--~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (993)
+.+|++ ++.++.||++++++||+.|.++||.| +|++... ..+...... .+.+.+... ..|+........+.
T Consensus 7 ~~hvv~-~p~p~~GHi~P~l~la~~L~~rGh~v~vt~~~t~~~~~~~~~~~~~~~~~~i~~~~i--~~glp~~~~~~~~~ 83 (456)
T 2c1x_A 7 NPHVAV-LAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCNIKSYDI--SDGVPEGYVFAGRP 83 (456)
T ss_dssp CCEEEE-ECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHHC-------CTTEEEEEC--CCCCCTTCCCCCCT
T ss_pred CCEEEE-EcCcccchHHHHHHHHHHHHhCCCCeEEEEEeCchhHHHhhccccccCCCceEEEeC--CCCCCCcccccCCh
Confidence 345543 47888999999999999999998765 5565431 111111010 123333332 11222110000011
Q ss_pred HHHHHHHHHHhhccHHHhHHHHH-HHHh--cCCCcEEEECC-CchHHHHHHHcCCcEEEEecCch--h--HHHHHH----
Q 001939 89 LASLEKYSETAVAPRKSILKDEV-EWLN--SIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSW--D--FIYAEY---- 156 (993)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~-~~L~--~~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~~--~--~~~~~y---- 156 (993)
......+... ....+.+.. ++++ ..+||+||+|. .+++..+|+.+|||.+.+..... . ..+..+
T Consensus 84 ~~~~~~~~~~----~~~~~~~~l~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 159 (456)
T 2c1x_A 84 QEDIELFTRA----APESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREK 159 (456)
T ss_dssp THHHHHHHHH----HHHHHHHHHHHHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHH----hHHHHHHHHHHHHhccCCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHhhhHHHHhc
Confidence 1111112111 111122222 2222 36899999998 56788899999999998844321 1 000000
Q ss_pred ----------------Hhhccc-------------c----hHHHHHHHHhhccccceeeecCCCCC--------CCCCCc
Q 001939 157 ----------------VMAAGH-------------H----HRSIVWQIAEDYSHCEFLIRLPGYCP--------MPAFRD 195 (993)
Q Consensus 157 ----------------~~~~~~-------------~----~~~i~~~l~~~y~~~d~ll~~p~~~~--------~p~~~~ 195 (993)
++..+. . ...+...+.+....++.++...+... .+.+++
T Consensus 160 ~~~~~~~~~~~~~~~~~pg~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~~le~~~~~~~~~~~~~ 239 (456)
T 2c1x_A 160 IGVSGIQGREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKT 239 (456)
T ss_dssp HCSSCCTTCTTCBCTTSTTCTTCBGGGSCTTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHHHSSC
T ss_pred cCCcccccccccccccCCCCCcccHHhCchhhcCCCcccHHHHHHHHHHHhhhhCCEEEECChHHHhHHHHHHHHhcCCC
Confidence 010000 0 00111111122233343332222111 112356
Q ss_pred eeecCcccccC-Cc-C--hHHHHHHhCCCCCCcEEEEEcCCCCCh-h----hHHHhhCCCCcEE-EEeCCCCC-CC----
Q 001939 196 VIDVPLVVRRL-HK-S--RKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYLPSGWKC-LVCGASDS-QL---- 260 (993)
Q Consensus 196 v~~vp~~~~~~-~~-~--~~~~r~~l~~~~~~~~Vlvs~G~~~~~-~----~ll~~l~~~~~~~-vv~G~~~~-~l---- 260 (993)
+..+|+..... .. . ..++.++++..+++++|||++||.+.. . +++..+...++.+ .++|.... .+
T Consensus 240 ~~~vGpl~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~l~~~~ 319 (456)
T 2c1x_A 240 YLNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGF 319 (456)
T ss_dssp EEECCCHHHHC---------CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGGGGGSCTTH
T ss_pred EEEecCcccCcccccccchhhHHHHHhcCCCcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCcchhhCCHHH
Confidence 77888764321 11 1 123667777666789999999998752 2 2333332234433 45665321 12
Q ss_pred ----CCCeEECCCCCCHHHHHh--hcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-CcEEEEecCC
Q 001939 261 ----PPNFIKLPKDAYTPDFMA--ASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY-QGGVEMIRRD 333 (993)
Q Consensus 261 ----~~nv~~~~~~~~~pdlL~--~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~-G~g~~l~~~~ 333 (993)
++|+++++|.+. .++|+ ++|+||||||+||++|++++|||+|++| .+.||+.||+++++. |+|+.+...+
T Consensus 320 ~~~~~~~~~v~~w~pq-~~vL~h~~~~~fvth~G~~S~~Eal~~GvP~i~~P--~~~dQ~~Na~~l~~~~g~g~~l~~~~ 396 (456)
T 2c1x_A 320 LEKTRGYGMVVPWAPQ-AEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRP--FFGDQRLNGRMVEDVLEIGVRIEGGV 396 (456)
T ss_dssp HHHHTTTEEEESCCCH-HHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECC--CSTTHHHHHHHHHHTSCCEEECGGGS
T ss_pred HhhcCCceEEecCCCH-HHHhcCCcCCEEEecCCcchHHHHHHhCceEEecC--ChhhHHHHHHHHHHHhCeEEEecCCC
Confidence 568898876654 37888 5899999999999999999999999999 678999999999999 9999998888
Q ss_pred CChhhHHHHHHHHHhCC
Q 001939 334 LLTGHWKPYLERAISLK 350 (993)
Q Consensus 334 ~~~~~l~~~l~~ll~~~ 350 (993)
++.+.+.++|+++++++
T Consensus 397 ~~~~~l~~~i~~ll~~~ 413 (456)
T 2c1x_A 397 FTKSGLMSCFDQILSQE 413 (456)
T ss_dssp CCHHHHHHHHHHHHHSH
T ss_pred cCHHHHHHHHHHHHCCC
Confidence 99999999999999775
No 39
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=99.88 E-value=2.8e-21 Score=228.53 Aligned_cols=330 Identities=10% Similarity=0.060 Sum_probs=192.6
Q ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCC-cccccccC------CCceEEeeeeccCCccccCccc
Q 001939 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPD-FVFTSEIQ------SPRLFIRKVLLDCGAVQADALT 85 (993)
Q Consensus 13 m~~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~-~~~~~~i~------~~~~~~~~~~~~~g~~~~~~~~ 85 (993)
|++.+|+++ +.++.||++|++.||+.|.++||+|+|+++... ........ .+.+.+.... .++..... .
T Consensus 6 ~~~~~vl~~-p~p~~GHi~P~l~La~~L~~rG~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~--~~lp~~~~-~ 81 (482)
T 2pq6_A 6 NRKPHVVMI-PYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIP--DGLTPMEG-D 81 (482)
T ss_dssp --CCEEEEE-CCSSHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHC------------CEEEEEEC--CCCC------
T ss_pred CCCCEEEEe-cCccchhHHHHHHHHHHHHhCCCeEEEEeCCchhhhhccccccccccCCCceEEEECC--CCCCCccc-c
Confidence 445566554 678899999999999999999999999976531 11111100 0234443321 12211000 0
Q ss_pred cChHHHHHHHHHHhhccHHHhHHHHHHHHh----cCCCcEEEECC-CchHHHHHHHcCCcEEEEecCchh--HHH---H-
Q 001939 86 VDRLASLEKYSETAVAPRKSILKDEVEWLN----SIKADLVVSDV-VPVACRAAADAGIRSVCVTNFSWD--FIY---A- 154 (993)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~----~~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~~~--~~~---~- 154 (993)
.+....+..+...+.......+.+..+.++ ..+||+||+|. .+++..+|+.+|||.+.+...... ..+ .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~ 161 (482)
T 2pq6_A 82 GDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRS 161 (482)
T ss_dssp ----CCHHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHHTTHHH
T ss_pred cCcchhHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHHHHHHHH
Confidence 000001112222221122333444444444 25899999998 678888999999999988443311 000 0
Q ss_pred ----HHHhhcc----------cc-----------h-------------HHHHH---HHHhhccccceeeecCCC-CC---
Q 001939 155 ----EYVMAAG----------HH-----------H-------------RSIVW---QIAEDYSHCEFLIRLPGY-CP--- 189 (993)
Q Consensus 155 ----~y~~~~~----------~~-----------~-------------~~i~~---~l~~~y~~~d~ll~~p~~-~~--- 189 (993)
.|.+... .. . ..... ...+....++.++...+. ..
T Consensus 162 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~nt~~~le~~~ 241 (482)
T 2pq6_A 162 FVERGIIPFKDESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDV 241 (482)
T ss_dssp HHHTTCSSCSSGGGGTSSGGGCBCCSSTTCCSCBGGGSCGGGCCSCTTCHHHHHHHHHHHTCCTTCCEEESSCGGGGHHH
T ss_pred HHhcCCCCCccccccccccccCccccCCCCCCCchHHCchhhccCCcccHHHHHHHHHHHhhccCCEEEEcChHHHhHHH
Confidence 0111000 00 0 00000 011122223333321111 11
Q ss_pred ----CCCCCceeecCccccc--CC-----------c---ChHHHHHHhCCCCCCcEEEEEcCCCCCh-h----hHHHhhC
Q 001939 190 ----MPAFRDVIDVPLVVRR--LH-----------K---SRKEVRKELGIEDDVKLLILNFGGQPAG-W----KLKEEYL 244 (993)
Q Consensus 190 ----~p~~~~v~~vp~~~~~--~~-----------~---~~~~~r~~l~~~~~~~~Vlvs~G~~~~~-~----~ll~~l~ 244 (993)
.+.++++..||+.... .. . ...++.++++-.+++++|||++||.+.. . +++..+.
T Consensus 242 ~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~ 321 (482)
T 2pq6_A 242 INALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLA 321 (482)
T ss_dssp HHHHHTTCTTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcEEEEcCCcccccccccccccccccccccccchHHHHHHhcCCCCceEEEecCCcccCCHHHHHHHHHHHH
Confidence 1233567888876431 11 1 1123567787656788999999998752 1 2333343
Q ss_pred CCCcEEE-EeCCCC--------CC-----CCCCeEECCCCCCHHHHHhh--cCEEEecCChhHHHHHHHcCCcEEEEeCC
Q 001939 245 PSGWKCL-VCGASD--------SQ-----LPPNFIKLPKDAYTPDFMAA--SDCMLGKIGYGTVSEALAYKLPFVFVRRD 308 (993)
Q Consensus 245 ~~~~~~v-v~G~~~--------~~-----l~~nv~~~~~~~~~pdlL~~--adl~It~~G~~Tv~Eal~~GvP~l~ip~~ 308 (993)
..++.++ ++|... ++ .++|+++++|.+.+ ++|+| +++||||||+||++|++++|||+|++|
T Consensus 322 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~pq~-~~L~h~~~~~~vth~G~~s~~Eal~~GvP~i~~P-- 398 (482)
T 2pq6_A 322 NCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQD-KVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWP-- 398 (482)
T ss_dssp HTTCEEEEECCGGGSTTTGGGSCHHHHHHHTTTEEEESCCCHH-HHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECC--
T ss_pred hcCCcEEEEEcCCccccccccCcHhHHHhcCCCEEEEeecCHH-HHhcCCCCCEEEecCCcchHHHHHHcCCCEEecC--
Confidence 3456554 455321 11 35799998766543 78976 666999999999999999999999999
Q ss_pred CCCChHHHHHHHH-HcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 309 YFNEEPFLRNMLE-FYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 309 ~~~EQ~~na~~l~-~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
.+.||+.||++++ +.|+|+.+. .+++.+.+.++|++++.++
T Consensus 399 ~~~dQ~~na~~~~~~~G~g~~l~-~~~~~~~l~~~i~~ll~~~ 440 (482)
T 2pq6_A 399 FFADQPTDCRFICNEWEIGMEID-TNVKREELAKLINEVIAGD 440 (482)
T ss_dssp CSTTHHHHHHHHHHTSCCEEECC-SSCCHHHHHHHHHHHHTSH
T ss_pred cccchHHHHHHHHHHhCEEEEEC-CCCCHHHHHHHHHHHHcCC
Confidence 5789999999997 799999998 7899999999999999776
No 40
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=99.87 E-value=1.2e-20 Score=221.71 Aligned_cols=321 Identities=13% Similarity=0.090 Sum_probs=190.5
Q ss_pred CcEEEEEecCCCCcccHHHHHHHHHHHHHC--CCeEEEEeCCCCc--cccccc-----CCCceEEeeeeccCCccccCcc
Q 001939 14 KHLVFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHVVTGAPDF--VFTSEI-----QSPRLFIRKVLLDCGAVQADAL 84 (993)
Q Consensus 14 ~~~~Il~~v~g~G~GH~~ralaLA~aL~~~--Gh~V~~v~~~~~~--~~~~~i-----~~~~~~~~~~~~~~g~~~~~~~ 84 (993)
++++|++ ++..+.||++|+++||+.|.++ ||+|+|++..... .....+ ..+.+.+.... .+.......
T Consensus 8 ~~~~vv~-~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp--~~~~~~~~~ 84 (463)
T 2acv_A 8 KNSELIF-IPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDLP--EVEPPPQEL 84 (463)
T ss_dssp HCEEEEE-ECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEECC--CCCCCCGGG
T ss_pred CCCEEEE-EcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhcccCCCCceEEECC--CCCCCcccc
Confidence 3456654 4778899999999999999999 9999999776421 011111 01234444321 111100000
Q ss_pred ccChHHHHHHHHHHhhccHHHhHHHHHHHHhc---CCCcEEEECC-CchHHHHHHHcCCcEEEEecCch-h-HHHHHH--
Q 001939 85 TVDRLASLEKYSETAVAPRKSILKDEVEWLNS---IKADLVVSDV-VPVACRAAADAGIRSVCVTNFSW-D-FIYAEY-- 156 (993)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---~kPDlVVsD~-~~~a~laA~~~gIP~V~i~~~~~-~-~~~~~y-- 156 (993)
..+.. .. +... .........+++++ .+||+||+|. .+++..+|+.+|||.+.+..... . ..+..+
T Consensus 85 ~~~~~-~~--~~~~----~~~~~~~~~~ll~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~ 157 (463)
T 2acv_A 85 LKSPE-FY--ILTF----LESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKN 157 (463)
T ss_dssp GGSHH-HH--HHHH----HHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGGG
T ss_pred cCCcc-HH--HHHH----HHhhhHHHHHHHHhccCCCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHHHHHh
Confidence 00111 11 1111 11122333455555 7899999998 66788899999999887633221 1 011000
Q ss_pred ------------------Hhhc-cc----chH-HH------HHH---HHhhccccceeeecCCCCC------------CC
Q 001939 157 ------------------VMAA-GH----HHR-SI------VWQ---IAEDYSHCEFLIRLPGYCP------------MP 191 (993)
Q Consensus 157 ------------------~~~~-~~----~~~-~i------~~~---l~~~y~~~d~ll~~p~~~~------------~p 191 (993)
.+.. .. ... .+ ... ....+..++.++..++... .|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~ele~~~~~~l~~~~~p 237 (463)
T 2acv_A 158 RQIEEVFDDSDRDHQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEK 237 (463)
T ss_dssp SCTTCCCCCSSGGGCEECCTTCSSCEEGGGSCHHHHCTTTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHHHHHCTT
T ss_pred hcccCCCCCccccCceeECCCCCCCCChHHCchhhcCCchHHHHHHHHHHhcccCCEEEECCHHHHhHHHHHHHHhcccc
Confidence 0100 00 000 00 000 0111222222221111100 01
Q ss_pred CCCceeecCcccccCC--------cChHHHHHHhCCCCCCcEEEEEcCCCC-C-hh----hHHHhhCCCCcEEE-EeCCC
Q 001939 192 AFRDVIDVPLVVRRLH--------KSRKEVRKELGIEDDVKLLILNFGGQP-A-GW----KLKEEYLPSGWKCL-VCGAS 256 (993)
Q Consensus 192 ~~~~v~~vp~~~~~~~--------~~~~~~r~~l~~~~~~~~Vlvs~G~~~-~-~~----~ll~~l~~~~~~~v-v~G~~ 256 (993)
.+++..+|+...... ..+.++.++++..+++++|||++||.+ . .. +++..+...++.++ ++|..
T Consensus 238 -~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 316 (463)
T 2acv_A 238 -IPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAE 316 (463)
T ss_dssp -SCCEEECCCCCCSSCCCBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCC
T ss_pred -CCcEEEeCCCcccccccccccccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 246777887653221 123467788876667899999999988 4 22 23333433355444 56653
Q ss_pred ----CCC----C--CCCeEECCCCCCHHHHHh--hcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHH-HHc
Q 001939 257 ----DSQ----L--PPNFIKLPKDAYTPDFMA--ASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNML-EFY 323 (993)
Q Consensus 257 ----~~~----l--~~nv~~~~~~~~~pdlL~--~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l-~~~ 323 (993)
.+. . ++|+++++|.+.+ ++|+ ++|+||||||+||++|++++|||+|++| .+.||+.||+++ ++.
T Consensus 317 ~~~l~~~~~~~~~~~~~~~v~~w~pq~-~vL~h~~~~~fvth~G~~s~~Eal~~GvP~i~~P--~~~dQ~~Na~~lv~~~ 393 (463)
T 2acv_A 317 KKVFPEGFLEWMELEGKGMICGWAPQV-EVLAHKAIGGFVSHCGWNSILESMWFGVPILTWP--IYAEQQLNAFRLVKEW 393 (463)
T ss_dssp GGGSCTTHHHHHHHHCSEEEESSCCHH-HHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECC--CSTTHHHHHHHHHHTS
T ss_pred cccCChhHHHhhccCCCEEEEccCCHH-HHhCCCccCeEEecCCchhHHHHHHcCCCeeecc--chhhhHHHHHHHHHHc
Confidence 122 2 6688887766543 6887 4999999999999999999999999999 688999999995 899
Q ss_pred CcEEEE-e---cC--CCChhhHHHHHHHHHh
Q 001939 324 QGGVEM-I---RR--DLLTGHWKPYLERAIS 348 (993)
Q Consensus 324 G~g~~l-~---~~--~~~~~~l~~~l~~ll~ 348 (993)
|+|+.+ . .. .++.+.+.++|+++++
T Consensus 394 g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~ 424 (463)
T 2acv_A 394 GVGLGLRVDYRKGSDVVAAEEIEKGLKDLMD 424 (463)
T ss_dssp CCEEESCSSCCTTCCCCCHHHHHHHHHHHTC
T ss_pred CeEEEEecccCCCCccccHHHHHHHHHHHHh
Confidence 999998 3 34 6889999999999995
No 41
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.86 E-value=6.6e-22 Score=217.08 Aligned_cols=167 Identities=14% Similarity=0.168 Sum_probs=130.3
Q ss_pred EEEcCccccc----cccccc-ccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCC
Q 001939 499 VARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSN 573 (993)
Q Consensus 499 ~~~APGRv~L----~GeH~d-y~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~ 573 (993)
.++||||||| +|+|+| |++..++++||+++.++.+++++++++ .+.+.
T Consensus 4 ~~~apaKinL~L~v~g~~~dGyh~l~sl~~ai~l~~~v~v~~~~~~~i---------------------~i~~~------ 56 (283)
T 2ww4_A 4 QWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDI---------------------RLLTP------ 56 (283)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEESSSCE---------------------EECSC------
T ss_pred cccCceeEEeeeeccCCCCCCCcceEEEEEECCCCcEEEEEECCCCcE---------------------EEEeC------
Confidence 4689999999 899999 999999999999999999998765322 22110
Q ss_pred CCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHh------CCCCCCCEEEEEEeCCCCCCCCc
Q 001939 574 RGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTEL------GVRFEDSISMLVSSAVPEGKGVS 647 (993)
Q Consensus 574 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~------g~~~~~g~~i~i~s~iP~g~GLg 647 (993)
. ..+ + ...|+++.++..+.+.. |.. .|++|.+.++||.|+|||
T Consensus 57 ----~----~~~-------------------~--~~~nlv~~a~~~~~~~~~~~~~~g~~--~g~~i~i~~~IP~g~GLG 105 (283)
T 2ww4_A 57 ----V----EGV-------------------E--HEDNLIVRAARLLMKTAADSGRLPTG--SGANISIDKRLPMGGGLG 105 (283)
T ss_dssp ----B----TTB-------------------C--GGGSHHHHHHHHHHHHHHHTTCSCTT--CEEEEEEECCCC-CTTSC
T ss_pred ----C----CCC-------------------C--CcccHHHHHHHHHHHHhhhhcccCCC--CceEEEEEeCCCCCCCcc
Confidence 0 010 1 12589999988777666 653 699999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEE
Q 001939 648 SSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRF 727 (993)
Q Consensus 648 SSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ 727 (993)
||||.++|++.|+++++|.++++++|+++|.++|. |..++++||. .+..... +..+++++| ++.+
T Consensus 106 sSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~e~----------dv~~~~~gg~---~~~~g~g-~~~~~l~~~-~~~~ 170 (283)
T 2ww4_A 106 GGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGA----------DVPVFVRGHA---AFAEGVG-EILTPVDPP-EKWY 170 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCT----------THHHHHHTBC---EEEETTT-TEEEECCCC-CCEE
T ss_pred HHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC----------CHHHhhcCCe---EEEEecC-ccceEcCCC-CcEE
Confidence 99999999999999999999999999999998873 7788999995 3333333 223566655 7889
Q ss_pred EEEeCCCcccc
Q 001939 728 WGIDSGIRHSV 738 (993)
Q Consensus 728 ll~dSgv~~~~ 738 (993)
++++++++.+|
T Consensus 171 vl~~p~~~~sT 181 (283)
T 2ww4_A 171 LVAHPGVSIPT 181 (283)
T ss_dssp EEECCSCCCCH
T ss_pred EEEeCCCCCch
Confidence 99998886665
No 42
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.86 E-value=1.9e-21 Score=212.99 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=124.0
Q ss_pred EEEEcCccccc----cccccc-ccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccC
Q 001939 498 FVARAPGRLDV----MGGIAD-YSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELS 572 (993)
Q Consensus 498 ~~~~APGRv~L----~GeH~d-y~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~ 572 (993)
+.+ ||||||| .|+|.| |++..++.++|+++.++.+++ + .+++ ..
T Consensus 2 i~~-aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v~~~~--~-~~~i---------------------~~------ 50 (275)
T 1uek_A 2 ERL-APAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEP--V-SSGL---------------------HF------ 50 (275)
T ss_dssp EEE-EEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEE--E-SSCE---------------------EE------
T ss_pred cee-ecCeEEEeeeecCcCCCCCceeeEEEEEcCCCCEEEEEE--C-cEEE---------------------EE------
Confidence 345 9999999 699999 999999999999999999987 2 2211 10
Q ss_pred CCCCceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHH
Q 001939 573 NRGPTFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASV 652 (993)
Q Consensus 573 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~ 652 (993)
+- ++ + ..|+++.++..+++..+.. .|++|.+.++||.++|||||||.
T Consensus 51 --------~~-~~-------------------~---~~n~v~~a~~~~~~~~g~~--~g~~i~i~~~IP~g~GLGSSsa~ 97 (275)
T 1uek_A 51 --------QG-PY-------------------G---RENLAYRAASLYLEAAGQP--GGVRILLEKRIPEGAGLGGGSSD 97 (275)
T ss_dssp --------ES-TT-------------------G---GGSHHHHHHHHHHHHTTCC--CEEEEEEECCSCSSSSSCHHHHH
T ss_pred --------cC-CC-------------------C---CccHHHHHHHHHHHHhCCC--CCEEEEEecCCCCcCcccHHHHH
Confidence 00 00 0 2588888888777776753 69999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccceeeecCCCCeEEEEEeC
Q 001939 653 EVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAELLGVVEIPSHIRFWGIDS 732 (993)
Q Consensus 653 ~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~~p~~~~~ll~dS 732 (993)
++|++.|+++++|.++ +|+++|.++|. |..++++||. .+...+. +..++++ ++++.++++++
T Consensus 98 a~a~l~al~~l~~~~l---~l~~la~~~g~----------dv~~~~~Gg~---~~~~g~g-~~~~~l~-~~~~~~vl~~p 159 (275)
T 1uek_A 98 AAQVLLALQALYPAEV---DLFALARTLGA----------DVPFFLLGRG---AEARGVG-ERLKPLA-LPPVPAVVFFP 159 (275)
T ss_dssp HHHHHHHHHHHSCSCC---CHHHHHHHHCT----------THHHHHHCSE---EEEETTT-TEEEEEC-CCCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCh---HHHHHHHHhCC----------ChHHHhcCCe---EEEEccC-ceeEEcc-CCCcEEEEEeC
Confidence 9999999999999988 89999998862 8889999994 3333333 2235666 56899999998
Q ss_pred CCcccc
Q 001939 733 GIRHSV 738 (993)
Q Consensus 733 gv~~~~ 738 (993)
+++.+|
T Consensus 160 ~~~~sT 165 (275)
T 1uek_A 160 GLRVPT 165 (275)
T ss_dssp CCCCCH
T ss_pred CCCCch
Confidence 876554
No 43
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.84 E-value=1.6e-19 Score=199.49 Aligned_cols=283 Identities=14% Similarity=0.167 Sum_probs=183.8
Q ss_pred eEEEEcCcccccccccccccCCeeeccccccceEEEEEecCcchhhhhhhhhhccCCCCCCCCCeEEEEecccccCCCCC
Q 001939 497 IFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKISPSKQRLWKHALARHNDKGQGPMPVLQIVSYGSELSNRGP 576 (993)
Q Consensus 497 ~~~~~APGRv~L~GeH~dy~gg~vl~~AI~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~s~~~~~~~~~~ 576 (993)
++.+++|++.--+|- |..+|-+||+.+.++.+++..+ . +.+....
T Consensus 2 m~~v~vPat~anlG~-----Gfd~lg~al~l~d~v~~~~~~~-~---------------------~~i~~~~-------- 46 (298)
T 3hul_A 2 SLRIRVPATTANLGP-----GFDSCGLALTLYLTLDIGAEAD-S---------------------WYIEHNI-------- 46 (298)
T ss_dssp CEEEEEEEEEESCTT-----CTTTEEEEEEEEEEEEEEEECS-S---------------------CEEECCC--------
T ss_pred eEEEEEeeceeccCC-----CcchhhhhcccceEEEEEEcCC-c---------------------eEEEecC--------
Confidence 367899999887777 7788889999998888875322 1 2221100
Q ss_pred ceeccCCccccCCCCcchHhhhcccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHH
Q 001939 577 TFDMDLSDFMDEGKPMSYEKAKKYFDTNPSQKWAAYVAGTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVAS 656 (993)
Q Consensus 577 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~yv~~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~ 656 (993)
-..+ | .+ -.|.++.++..+++ .. .|++|.+.++||.++|||||||.++|+
T Consensus 47 -----~~~~-----p-----------~~----~~nlv~~a~~~~~~----~~-~g~~i~i~~~iP~~~GLGsssa~~~a~ 96 (298)
T 3hul_A 47 -----GGGI-----P-----------HD----ETNVIIETALNLAP----NL-TPHHLVMTCDIPPARGLGSSSAAVVAG 96 (298)
T ss_dssp -----CTTC-----C-----------SS----TTSHHHHHHHHHCT----TC-CCEEEEEEECSCTTSSSSHHHHHHHHH
T ss_pred -----cccC-----C-----------CC----CCcHHHHHHHHHhc----cC-CceEEEEecCCCCCCCccHHHHHHHHH
Confidence 0001 0 01 13555555554332 22 699999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEeecCccc-eeeecCCCCeEEEEEeCCCc
Q 001939 657 MSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMVCQPAEL-LGVVEIPSHIRFWGIDSGIR 735 (993)
Q Consensus 657 ~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~~~~-~~~v~~p~~~~~ll~dSgv~ 735 (993)
+.|++.++|.++++++|+++|.++|.+ | .|-.++++||. .+...+.... ..++++| ++.+++++++..
T Consensus 97 ~~al~~~~~~~l~~~el~~la~~~eg~----~---ddv~~~~~GG~---~~~~g~ge~~~~~~~~~p-~~~~vlv~p~~~ 165 (298)
T 3hul_A 97 IELANTLAELNLSKEEKVRIAAEIEGH----P---DNVAPAVLGNW---VVGAKLDGEDFYVRHLFP-DCALIAFIPKAE 165 (298)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHSC----S---TTHHHHHHCSE---EEEEEETTEEEEEEECCC--CEEEEEECCCC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHhcCC----c---ccCcccccCCE---EEEEeCCCcEEEEEcCCC-CeEEEEEECCCC
Confidence 999999999999999999999999943 3 23356789995 2222222111 1245554 589999988776
Q ss_pred cccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCc
Q 001939 736 HSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPE 815 (993)
Q Consensus 736 ~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~ 815 (993)
.+|.. .|+ .+|+
T Consensus 166 ~sT~~-a~~-------------------------------------------------------------------~l~~ 177 (298)
T 3hul_A 166 LLTSE-SRG-------------------------------------------------------------------VLPD 177 (298)
T ss_dssp CC----------------------------------------------------------------------------CC
T ss_pred CCcHH-HHH-------------------------------------------------------------------HHhh
Confidence 55431 110 1111
Q ss_pred cchhhhhhhhcCCCCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHH--hhhhhhhcCC
Q 001939 816 SIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQ--CHYSYSACGL 893 (993)
Q Consensus 816 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~--sH~slr~~~v 893 (993)
.++ ....+.+..|+..+..+|.++ |++.||++|+. .|+.++..
T Consensus 178 ~~~-----------------------------~~~~~~~~~~~~~~~~al~~~----d~~~l~~~l~nd~~~e~~~~~-- 222 (298)
T 3hul_A 178 TLP-----------------------------FKEAVQASSIANVMIAAILRN----DMTLAGEMMERDLWHEKYRSQ-- 222 (298)
T ss_dssp EEE-----------------------------HHHHHHHHHHHHHHHHHHTTT----CHHHHHHHHTCCCC-----CT--
T ss_pred hcc-----------------------------HHHHHHHHHHHHHHHHHHHcC----CHHHHHHHHhhhHHHHHHHHh--
Confidence 000 001223345667788888885 99999999973 48888874
Q ss_pred CCchHHHHHHHHHHHhhhccccCCCCcccceeeeccccCceEEEEccCCcccHHHHHHHHHHHHhhcCCCCcEEee--cC
Q 001939 894 GSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYKDATGYLPLIIEG--SS 971 (993)
Q Consensus 894 s~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~~~~g~~~~~~~~--~~ 971 (993)
.+|+++++++.+++ .|++|++|||+| +|++++.+ ..+ .+++.+.++ +.+....++.+ ..
T Consensus 223 ~~p~l~~l~~~~~~-----------~Ga~ga~~SGsG--ptv~al~~-~~~----a~~v~~~l~-~~~~~~~~~~~~~~~ 283 (298)
T 3hul_A 223 LVPHLAQIRDVAKN-----------QGAYAACLSGAG--PTVLVFAP-RNL----ANKLQTSLQ-TLEIDADVLLLDVEG 283 (298)
T ss_dssp TGGGHHHHHHHHHT-----------TTCCEEEECTTS--SCEEEEEC-GGG----HHHHHHHHH-TTCCSSEEEEEEBCC
T ss_pred hCchHHHHHHHHHH-----------CCCEEEEEeccc--hheEEEEC-HHH----HHHHHHHHH-hcCCCcEEEEcccCC
Confidence 58999999999886 689999999999 78887765 222 345555555 34555666665 57
Q ss_pred CCCcce
Q 001939 972 PGAGKF 977 (993)
Q Consensus 972 ~G~~~~ 977 (993)
.|+++.
T Consensus 284 ~Ga~v~ 289 (298)
T 3hul_A 284 SGAEVF 289 (298)
T ss_dssp CCCEEE
T ss_pred CceEEE
Confidence 787653
No 44
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.81 E-value=1.3e-18 Score=197.24 Aligned_cols=320 Identities=15% Similarity=0.035 Sum_probs=197.3
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHH
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKY 95 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 95 (993)
|+|+++..+.| ||..++..|+++|.++||+|++++...... ...+...++.+..... .++. .... ...+
T Consensus 7 mkIl~~~~~~g-G~~~~~~~la~~L~~~G~~V~v~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~-----~~~~---~~~~ 75 (364)
T 1f0k_A 7 KRLMVMAGGTG-GHVFPGLAVAHHLMAQGWQVRWLGTADRME-ADLVPKHGIEIDFIRI-SGLR-----GKGI---KALI 75 (364)
T ss_dssp CEEEEECCSSH-HHHHHHHHHHHHHHTTTCEEEEEECTTSTH-HHHGGGGTCEEEECCC-CCCT-----TCCH---HHHH
T ss_pred cEEEEEeCCCc-cchhHHHHHHHHHHHcCCEEEEEecCCcch-hhhccccCCceEEecC-CccC-----cCcc---HHHH
Confidence 78888876655 999999999999999999999998754211 1111111222222100 0000 0000 0111
Q ss_pred HHHhhccHHHhHHHHHHHHhcCCCcEEEECCCc---hHHHHHHHcCCcEEEEecCchhHHHHHHHhhcccchHHHHHHHH
Q 001939 96 SETAVAPRKSILKDEVEWLNSIKADLVVSDVVP---VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIA 172 (993)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~---~a~laA~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~~l~ 172 (993)
...+ .....+....+++++.+||+|+++..+ .+.++++..++|++...+..+.... ...
T Consensus 76 ~~~~--~~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~---------------~~~- 137 (364)
T 1f0k_A 76 AAPL--RIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGIAGLT---------------NKW- 137 (364)
T ss_dssp TCHH--HHHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSSSCCHH---------------HHH-
T ss_pred HHHH--HHHHHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEecCCCCcHH---------------HHH-
Confidence 0000 011123445677889999999998632 3456778889999866332211000 011
Q ss_pred hhccccceeeecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCCh--hhHH-Hh---hCCC
Q 001939 173 EDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--WKLK-EE---YLPS 246 (993)
Q Consensus 173 ~~y~~~d~ll~~p~~~~~p~~~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~~ll-~~---l~~~ 246 (993)
.+..++.++.. .....+. ..+.+.|+........ ..++.++++++.++|+++.|+.... .+++ +. +..
T Consensus 138 -~~~~~d~v~~~-~~~~~~~-~~~i~n~v~~~~~~~~--~~~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~- 211 (364)
T 1f0k_A 138 -LAKIATKVMQA-FPGAFPN-AEVVGNPVRTDVLALP--LPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGD- 211 (364)
T ss_dssp -HTTTCSEEEES-STTSSSS-CEECCCCCCHHHHTSC--CHHHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG-
T ss_pred -HHHhCCEEEec-ChhhcCC-ceEeCCccchhhcccc--hhhhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC-
Confidence 12233444432 1111121 1233333322211111 1234566666777788888877653 2322 32 322
Q ss_pred CcE-EEEeCCCCCC--------CC-CCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCC-CChHH
Q 001939 247 GWK-CLVCGASDSQ--------LP-PNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYF-NEEPF 315 (993)
Q Consensus 247 ~~~-~vv~G~~~~~--------l~-~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~-~EQ~~ 315 (993)
++. ++++|..... ++ +||++.|++++++++|+.||++|+++|.+++.||+++|+|+|+.+.++. .+|..
T Consensus 212 ~~~~l~i~G~~~~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~sg~~~~~EAma~G~Pvi~~~~~g~~~~q~~ 291 (364)
T 1f0k_A 212 SVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYW 291 (364)
T ss_dssp GEEEEEECCTTCHHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECCCHHHHHHHHHHTCCEEECCCCCTTCHHHH
T ss_pred CcEEEEEcCCchHHHHHHHHhhcCCCceEEecchhhHHHHHHhCCEEEECCchHHHHHHHHhCCCEEEeeCCCCchhHHH
Confidence 566 4567876521 22 5899999998899999999999999999999999999999999986544 57999
Q ss_pred HHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCc---------cCCCCHHHHHHHHHHHHHc
Q 001939 316 LRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCY---------EGGINGGEVAAHILQETAI 372 (993)
Q Consensus 316 na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~---------~~~~~ga~~~a~~i~~~~~ 372 (993)
|++.+++.|.|+.++..+++++.|.++|.++ ++..+ .....+.+++++.++++..
T Consensus 292 ~~~~~~~~g~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 355 (364)
T 1f0k_A 292 NALPLEKAGAAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAASIPDATERVANEVSRVAR 355 (364)
T ss_dssp HHHHHHHTTSEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCcEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHH
Confidence 9999999999999998887788999999877 43211 1356788888888888754
No 45
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=99.79 E-value=4.9e-18 Score=185.17 Aligned_cols=246 Identities=15% Similarity=0.190 Sum_probs=152.8
Q ss_pred EEEEec---CCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHH
Q 001939 17 VFAYYV---TGHGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLE 93 (993)
Q Consensus 17 ~Il~~v---~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 93 (993)
+|+|.+ ...|+||++||++||++|+ +|.|+|..........+. +.+.. .. ..+
T Consensus 2 ki~ir~Da~~~IG~GHvmRcl~LA~~l~----~v~F~~~~~~~~~~~~~g---~~v~~-------l~----~~d------ 57 (282)
T 3hbm_A 2 KVLFRSDSSSQIGFGHIKRDLVLAKQYS----DVSFACLPLEGSLIDEIP---YPVYE-------LS----SES------ 57 (282)
T ss_dssp CEEEEECCBTTTBSHHHHHHHHHHTTCS----SEEEEECCCTTCCGGGCC---SCEEE-------CS----SSC------
T ss_pred EEEEEEecCCCccccHHHHHHHHHHHHH----hCEEEEecCcHhHHHHCC---CeEEE-------cC----ccC------
Confidence 344444 4678999999999999998 899998653221111111 11111 00 000
Q ss_pred HHHHHhhccHHHhHHHHHHHHhcCCCcEEEECCCchHHHHH----HHcCCcEEEEecCchhHHHHHHHhhcccchHHHHH
Q 001939 94 KYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAA----ADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVW 169 (993)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~a~laA----~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~ 169 (993)
..+..+++++.+||+||.|++.....+- ...++++++++++.- .+
T Consensus 58 -------------~~~~~~~l~~~~~d~lIvD~Y~~~~~~~~~lk~~~~~~i~~iDD~~~-----~~------------- 106 (282)
T 3hbm_A 58 -------------IYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDEIK-----PH------------- 106 (282)
T ss_dssp -------------HHHHHHHHHHHTCSEEEEECTTCCHHHHHHHHHHHCCEEEEECSSCC-----CC-------------
T ss_pred -------------HHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHhcCcEEEEEecCCC-----cc-------------
Confidence 1223455677899999999854433222 224889999987641 00
Q ss_pred HHHhhccccceeeecCCCC-------CCCCCCceeecCcccccCCcChHHHHHHhC-CCCCCcEEEEEcCCCCCh---hh
Q 001939 170 QIAEDYSHCEFLIRLPGYC-------PMPAFRDVIDVPLVVRRLHKSRKEVRKELG-IEDDVKLLILNFGGQPAG---WK 238 (993)
Q Consensus 170 ~l~~~y~~~d~ll~~p~~~-------~~p~~~~v~~vp~~~~~~~~~~~~~r~~l~-~~~~~~~Vlvs~G~~~~~---~~ 238 (993)
.+|.++-..+.. ..|... ....|+.. .+.+++..+.-. ..++.+.|++++||.+.. ..
T Consensus 107 -------~~Dllin~~~~~~~~~Y~~~~p~~~-~~l~G~~Y---~~lR~eF~~~~~~~r~~~~~ILv~~GG~d~~~l~~~ 175 (282)
T 3hbm_A 107 -------HCDILLNVNAYAKASDYEGLVPFKC-EVRCGFSY---ALIREEFYQEAKENRKKKYDFFICMGGTDIKNLSLQ 175 (282)
T ss_dssp -------CCSEEEECSTTCCGGGGTTTCC-CC-EEEESGGG---CCCCHHHHHHTTCCCCCCEEEEEECCSCCTTCHHHH
T ss_pred -------cCCEEEeCCcccchhhccccCCCCC-eEeeCCcc---cccCHHHHHhhhhccccCCeEEEEECCCchhhHHHH
Confidence 122222111000 001100 11223211 123344332211 123456899999987653 24
Q ss_pred HHHhhCCCCcEEEEeCCCCCC---------CCCCeEECCCCCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCC
Q 001939 239 LKEEYLPSGWKCLVCGASDSQ---------LPPNFIKLPKDAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDY 309 (993)
Q Consensus 239 ll~~l~~~~~~~vv~G~~~~~---------l~~nv~~~~~~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~ 309 (993)
+++.+.......+++|++.+. ..+|+++.+|+++|+++|+.||++||+|| +|++|++++|+|+|++|.
T Consensus 176 vl~~L~~~~~i~vv~G~~~~~~~~l~~~~~~~~~v~v~~~~~~m~~~m~~aDlvI~~gG-~T~~E~~~~g~P~i~ip~-- 252 (282)
T 3hbm_A 176 IASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHENIAKLMNESNKLIISAS-SLVNEALLLKANFKAICY-- 252 (282)
T ss_dssp HHHHSCTTSCEEEEECTTCTTHHHHHHHHHTCSSEEEEESCSCHHHHHHTEEEEEEESS-HHHHHHHHTTCCEEEECC--
T ss_pred HHHHhhcCCCEEEEECCCchHHHHHHHHHhhCCCEEEEeCHHHHHHHHHHCCEEEECCc-HHHHHHHHcCCCEEEEeC--
Confidence 555554433456778887653 13589999999999999999999999888 899999999999999995
Q ss_pred CCChHHHHHHHHHcCcEEEEec
Q 001939 310 FNEEPFLRNMLEFYQGGVEMIR 331 (993)
Q Consensus 310 ~~EQ~~na~~l~~~G~g~~l~~ 331 (993)
..+|..||+.+++.|+++.+..
T Consensus 253 ~~~Q~~nA~~l~~~G~~~~~~~ 274 (282)
T 3hbm_A 253 VKNQESTATWLAKKGYEVEYKY 274 (282)
T ss_dssp SGGGHHHHHHHHHTTCEEECGG
T ss_pred CCCHHHHHHHHHHCCCEEEcch
Confidence 4689999999999999988764
No 46
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.74 E-value=7.2e-17 Score=186.13 Aligned_cols=227 Identities=12% Similarity=0.078 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHhCC------C-----CCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 001939 610 AAYVAGTILVLMTELGV------R-----FEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQ 678 (993)
Q Consensus 610 ~~yv~~~i~~~~~~~g~------~-----~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~ 678 (993)
.|+++.++..+.+..+. . . .|++|.+.++||.++|||||||.+||++.|++.++|.++++++|+++|.
T Consensus 92 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~ 170 (416)
T 1fi4_A 92 NERTQNCLRDLRQLRKEMESKDASLPTLSQ-WKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIAR 170 (416)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCTTSCCGGG-SCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccccccccccC-CcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence 46777777765544443 0 2 6899999999999999999999999999999999999999999999998
Q ss_pred HHhccccCCCCCcchhhHhhccccceEEEEeecC----c-cceeeecC---CCCeE--EEEEeCCCccccCCCCccchhh
Q 001939 679 KVENHIVGAPCGVMDQMASACGEANKLLAMVCQP----A-ELLGVVEI---PSHIR--FWGIDSGIRHSVGGADYGSVRA 748 (993)
Q Consensus 679 ~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~~~~----~-~~~~~v~~---p~~~~--~ll~dSgv~~~~~~~~y~~~r~ 748 (993)
.++. +...+++||. +..+... . ....+++. .+++. +++.+++.++......|+.+
T Consensus 171 ~g~G----------s~~~sl~GG~---v~~~~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~~~~sst~~~~~~-- 235 (416)
T 1fi4_A 171 KGSG----------SACRSLFGGY---VAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLT-- 235 (416)
T ss_dssp HHHG----------GGGGGGSSSE---EEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHHH--
T ss_pred ccCC----------chheEeeCCc---EEEecCCcCCCCCceeEEecCccCCcccEEEEEEECCCCCCcCCHHHHHHH--
Confidence 7753 3457899995 2332211 0 11123332 24666 45555543332211111000
Q ss_pred hhhcchhhHHhhhhccCcccCCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCC
Q 001939 749 GAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGD 828 (993)
Q Consensus 749 ~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~ 828 (993)
+.. -|
T Consensus 236 ------------------------------------------------~~~-------------~~-------------- 240 (416)
T 1fi4_A 236 ------------------------------------------------VAT-------------SE-------------- 240 (416)
T ss_dssp ------------------------------------------------HHH-------------CS--------------
T ss_pred ------------------------------------------------hhc-------------CH--------------
Confidence 000 00
Q ss_pred CCCCceecCCCcccccccccccccchhhHHHHHHHHHHccCChhHHHHHHHHHHHhhhhhhh-c-------CCCCchHHH
Q 001939 829 HNDPVTVIDPKRTYFVRAPVCHPIYENFRVKAFKALLTAAASDDQLTSLGELLYQCHYSYSA-C-------GLGSDGTDR 900 (993)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~r~~h~v~E~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~sH~slr~-~-------~vs~~~lD~ 900 (993)
...+++.++. ..|+..++.+|.++ |++.||++|.++|..+.. + ....|++.+
T Consensus 241 --------------~~~~~~~~i~--~~~~~~l~~AL~~g----D~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~ 300 (416)
T 1fi4_A 241 --------------LFKERIEHVV--PKRFEVMRKAIVEK----DFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKR 300 (416)
T ss_dssp --------------HHHHHHHTHH--HHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHH
T ss_pred --------------hHHHHHHHHH--HHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHH
Confidence 0001222221 24678899999986 999999999877666554 1 124567788
Q ss_pred HHHHHHHHhhhccccCCCCc-ccceeeeccccCceEEEEccCCcccHHHHHHHHHHHH
Q 001939 901 LVQLVQEIQHSKVSKSKDGT-LFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRYK 957 (993)
Q Consensus 901 lv~~a~~~~~~~~~~~~~~g-~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y~ 957 (993)
+++.+.++.. ..| ++++-|+|+| +|+++|.+++. .+++.+++++.|.
T Consensus 301 i~~~~~~~r~-------~~Ga~~~a~~SGaG--Ptv~al~~~~~-~~~v~~~l~~~~~ 348 (416)
T 1fi4_A 301 IISWCHTINQ-------FYGETIVAYTFDAG--PNAVLYYLAEN-ESKLFAFIYKLFG 348 (416)
T ss_dssp HHHHHHHHHH-------HHTSCCEEEEECSS--SCEEEEEEGGG-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-------hcCCceEEEEecCC--CcEEEEECHHH-HHHHHHHHHHhcc
Confidence 8877765310 015 6778899988 88887765432 3567778887775
No 47
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.68 E-value=3.3e-16 Score=158.14 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=112.5
Q ss_pred cChHHHHHHhCCCCCCcEEEEEcCCCCC--hh----hHHHhhCCCCcEEEE-eCCCCC-CCCCCeEECCCCCCHHHHH--
Q 001939 208 KSRKEVRKELGIEDDVKLLILNFGGQPA--GW----KLKEEYLPSGWKCLV-CGASDS-QLPPNFIKLPKDAYTPDFM-- 277 (993)
Q Consensus 208 ~~~~~~r~~l~~~~~~~~Vlvs~G~~~~--~~----~ll~~l~~~~~~~vv-~G~~~~-~l~~nv~~~~~~~~~pdlL-- 277 (993)
.+++++.+++...+++++||+++|+.+. .. .+++.+...++.+++ +|.... .+++|+++.+|.+. .++|
T Consensus 6 ~l~~~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~-~~~l~~ 84 (170)
T 2o6l_A 6 PLPKEMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGNKPDTLGLNTRLYKWIPQ-NDLLGH 84 (170)
T ss_dssp CCCHHHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSSCCTTCCTTEEEESSCCH-HHHHTS
T ss_pred CCCHHHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCcCcccCCCcEEEecCCCH-HHHhcC
Confidence 4567888888655577899999999863 22 234445433565544 454332 37889999988765 5788
Q ss_pred hhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 278 AASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 278 ~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
+.||+||+|+|++|++|++++|+|+|++|. +.||..|++++++.|+|+.++..+++++.|.++|.+++.++
T Consensus 85 ~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p~--~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~ 155 (170)
T 2o6l_A 85 PKTRAFITHGGANGIYEAIYHGIPMVGIPL--FADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDP 155 (170)
T ss_dssp TTEEEEEECCCHHHHHHHHHHTCCEEECCC--STTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCH
T ss_pred CCcCEEEEcCCccHHHHHHHcCCCEEeccc--hhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcCH
Confidence 789999999999999999999999999994 58999999999999999999988888999999999999775
No 48
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.47 E-value=1.4e-12 Score=143.89 Aligned_cols=216 Identities=12% Similarity=0.053 Sum_probs=137.3
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEEeCCCCCCCCchHHHHHHHHH----HHHHHHhCCCC-CHHHHHHHHHHHhccccCCCC
Q 001939 615 GTILVLMTELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASM----SAIAAAHGLNI-HPRDLALLCQKVENHIVGAPC 689 (993)
Q Consensus 615 ~~i~~~~~~~g~~~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~----~al~~~~g~~l-~~~el~~la~~~E~~~~G~~~ 689 (993)
..+..++++++.. .|++|.+.++||.++|||||||..||++ .|+++++|+++ +++||.++|..+|.
T Consensus 78 ~~i~~~l~~~~~~--~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gsG------- 148 (323)
T 3lto_A 78 DHLVRLKEYFGYV--GGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGSG------- 148 (323)
T ss_dssp HHHHHHHHHHTCC--CCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTCG-------
T ss_pred HHHHHHHHHhCCC--CCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC-------
Confidence 3455567777754 6999999999999999999999999999 99999999999 99999999976542
Q ss_pred CcchhhHhhccccceEEEEeecCccceeeec-CCCCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCccc
Q 001939 690 GVMDQMASACGEANKLLAMVCQPAELLGVVE-IPSHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQS 768 (993)
Q Consensus 690 G~mDq~~~~~Gg~~~~~~i~~~~~~~~~~v~-~p~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~ 768 (993)
+-..|+|||. +..... +...+. .++++.++++.-.-+....++ . .+
T Consensus 149 ---saa~si~GG~---v~~~~g---~~~~l~~~~~~l~~~v~vi~~~~~~vsT----~-------------~~------- 195 (323)
T 3lto_A 149 ---SSCRSFYAPW---ALWTGD---KVSAIDLPYKDLLHQVIVISSQEKEIPS----R-------------VA------- 195 (323)
T ss_dssp ---GGGGGGSCSE---EEEETT---EEEECCCSCCSCEEEEEECCCCTTCCCH----H-------------HH-------
T ss_pred ---CcchhhhCCE---EEEecC---cEEEccCCCCCCeEEEEEECCCCCCCCC----H-------------HH-------
Confidence 3357999994 323211 112332 224666544321111100000 0 00
Q ss_pred CCCCCCCCCCCccchhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCccccccccc
Q 001939 769 LPSSNGLNNIEPEVDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPV 848 (993)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 848 (993)
.+ .++.. + ..
T Consensus 196 ----------------~~-------------------------~l~~~---------------~--------------~~ 205 (323)
T 3lto_A 196 ----------------HK-------------------------LVKTS---------------P--------------FY 205 (323)
T ss_dssp ----------------HH-------------------------HGGGS---------------T--------------TT
T ss_pred ----------------Hh-------------------------hcccC---------------h--------------hH
Confidence 00 00000 0 01
Q ss_pred ccccch-hhHHHHHHHHHHccCChhHHHHHHHHHHH----hhhhhhh----cCCCCchHHHHHHHHHHHhhhccccCCCC
Q 001939 849 CHPIYE-NFRVKAFKALLTAAASDDQLTSLGELLYQ----CHYSYSA----CGLGSDGTDRLVQLVQEIQHSKVSKSKDG 919 (993)
Q Consensus 849 ~h~v~E-~~Rv~~~~~al~~~~~~~~l~~lG~Lm~~----sH~slr~----~~vs~~~lD~lv~~a~~~~~~~~~~~~~~ 919 (993)
.+.+.+ ..|+..++++|+++ |++.||++|.. -|..+++ .-.-.|++.++++.++++.+ ..
T Consensus 206 ~~~~~~~~~~~~~l~~AL~~g----D~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~-------~~ 274 (323)
T 3lto_A 206 ETRSERAEANLKLLLNAFENK----DWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWN-------EK 274 (323)
T ss_dssp TTHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHhHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHH-------hC
Confidence 122222 35788999999996 99999998753 4766655 12257888888888876421 14
Q ss_pred cccceeeeccccCceEEEEccCCcccHHHHHHHHHHH
Q 001939 920 TLFGAKITGGGSGGTICVIGRNSLRSSEQVLEIQQRY 956 (993)
Q Consensus 920 g~~GakltGaG~GG~vi~l~~~~~~~~~~~~~i~~~y 956 (993)
|++|+.++||| ++++++.+.+. .+++.+.+.+.+
T Consensus 275 G~~~~~tsgAG--Pnv~~l~~~~~-~~~v~~~l~~~~ 308 (323)
T 3lto_A 275 GDGPVVTMDAG--PNVHLLYRSDQ-TDLARQFKSDHL 308 (323)
T ss_dssp SCCCEEECCSS--SCEEEEECGGG-HHHHHHHHHHHT
T ss_pred CCeEEEEECCC--CCeEEEEeccc-HHHHHHHHHHHh
Confidence 78999999999 77766654332 245666665444
No 49
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=99.44 E-value=3.6e-13 Score=141.10 Aligned_cols=149 Identities=16% Similarity=0.103 Sum_probs=104.1
Q ss_pred hCCCCCCcEEEEEcCCCCChhhHH---------HhhCCCC-c-EEEEeCCCCC---C--------------CC-------
Q 001939 217 LGIEDDVKLLILNFGGQPAGWKLK---------EEYLPSG-W-KCLVCGASDS---Q--------------LP------- 261 (993)
Q Consensus 217 l~~~~~~~~Vlvs~G~~~~~~~ll---------~~l~~~~-~-~~vv~G~~~~---~--------------l~------- 261 (993)
++.++++++|||++||+..-..++ ..+...+ + .++.+|.... . +|
T Consensus 22 ~~~~~~~~~VlVtgGS~~~~n~li~~vl~~~~l~~L~~~~~~~vv~q~G~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~ 101 (224)
T 2jzc_A 22 LEGIIEEKALFVTCGATVPFPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYSSEFEHLVQERGGQRESQKIPIDQFGCG 101 (224)
T ss_dssp --CCCCSCCEEEECCSCCSCHHHHHHHTSHHHHHHHHTTTCCCEEECCCSSSCCCCCSHHHHHTCEECSCCCSSCTTCTT
T ss_pred cCCCCCCCEEEEEcCCchHHHHHHHHHHHHHHHHHHhcCCCeEEEEEECCCchhhHHHHHHhhhcccccccccccccccc
Confidence 445567889999999985322221 3343334 4 4456787543 1 12
Q ss_pred ------------CCeEECCCCCCHHHHHh-hcCEEEecCChhHHHHHHHcCCcEEEEeCCC--CCChHHHHHHHHHcCcE
Q 001939 262 ------------PNFIKLPKDAYTPDFMA-ASDCMLGKIGYGTVSEALAYKLPFVFVRRDY--FNEEPFLRNMLEFYQGG 326 (993)
Q Consensus 262 ------------~nv~~~~~~~~~pdlL~-~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~--~~EQ~~na~~l~~~G~g 326 (993)
.++.+++|.++|+++|+ .||++|||+|++|++|++++|+|+|++|.+. ..+|..||+++++.|++
T Consensus 102 ~~~~~~~~~~~~~~v~v~~f~~~m~~~l~~~AdlvIshaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~ 181 (224)
T 2jzc_A 102 DTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDLVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYV 181 (224)
T ss_dssp CSCEEEESTTTSSEEEECCSSSSHHHHHHHHCSCEEESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCC
T ss_pred ccccccccccCCceEEEeeccchHHHHHHhcCCEEEECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCE
Confidence 14668899999999999 9999999999999999999999999999753 35799999999999999
Q ss_pred EEEecCCCChhhHHHHHHHHHhCCCCcc-CCCCHHHHHHHHHHHH
Q 001939 327 VEMIRRDLLTGHWKPYLERAISLKPCYE-GGINGGEVAAHILQET 370 (993)
Q Consensus 327 ~~l~~~~~~~~~l~~~l~~ll~~~~~~~-~~~~ga~~~a~~i~~~ 370 (993)
+.++ ++.|.++|+++......+. ..+.+....+.+|.+.
T Consensus 182 ~~~~-----~~~L~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 221 (224)
T 2jzc_A 182 WSCA-----PTETGLIAGLRASQTEKLKPFPVSHNPSFERLLVET 221 (224)
T ss_dssp CEEC-----SCTTTHHHHHHHHTTCCCCSCCCSSSCTHHHHHHHH
T ss_pred EEcC-----HHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHH
Confidence 8763 4566788888744332333 2222444566666654
No 50
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.41 E-value=6.5e-12 Score=143.24 Aligned_cols=80 Identities=20% Similarity=0.216 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHhCCC-CCCCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCC
Q 001939 610 AAYVAGTILVLMTELGVR-FEDSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAP 688 (993)
Q Consensus 610 ~~yv~~~i~~~~~~~g~~-~~~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~ 688 (993)
.|.+..++..+.+..+.. ...|++|.+.++||.++|||||||..||++.|++.++|.+ ++|+++|...|.
T Consensus 75 ~~~v~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~G------ 145 (380)
T 2hke_A 75 TPRVQSMLLHLRSTCPEELKNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGSG------ 145 (380)
T ss_dssp CHHHHHHHHHHHTSSCHHHHTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHCG------
T ss_pred HHHHHHHHHHHHHHhcccCCCCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcCc------
Confidence 356666666544333430 0268999999999999999999999999999999999987 889999986642
Q ss_pred CCcchhhHhhcccc
Q 001939 689 CGVMDQMASACGEA 702 (993)
Q Consensus 689 ~G~mDq~~~~~Gg~ 702 (993)
|...|+|||.
T Consensus 146 ----sva~s~~GG~ 155 (380)
T 2hke_A 146 ----SACRSAFGGF 155 (380)
T ss_dssp ----GGGGGGSSSE
T ss_pred ----ceeeehhCCe
Confidence 4568999995
No 51
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.30 E-value=9e-11 Score=135.99 Aligned_cols=131 Identities=18% Similarity=0.133 Sum_probs=91.6
Q ss_pred HHHHHhCCCCCCcEEEEEcCCCCCh--h-hHHHh---h---CC-CCcEEEEeCC----CCC-C----------CCCCeEE
Q 001939 212 EVRKELGIEDDVKLLILNFGGQPAG--W-KLKEE---Y---LP-SGWKCLVCGA----SDS-Q----------LPPNFIK 266 (993)
Q Consensus 212 ~~r~~l~~~~~~~~Vlvs~G~~~~~--~-~ll~~---l---~~-~~~~~vv~G~----~~~-~----------l~~nv~~ 266 (993)
.+++.++++++.+ ++++.|+.... . .+++. + .+ .++.++++|. ... . +.+||++
T Consensus 232 ~~r~~~~~~~~~~-~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~ 310 (438)
T 3c48_A 232 RSRRELGIPLHTK-VVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRF 310 (438)
T ss_dssp HHHHHTTCCSSSE-EEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEE
T ss_pred hhHHhcCCCCCCc-EEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEE
Confidence 4788888865554 56677876542 2 23332 2 12 2678888887 321 1 3678999
Q ss_pred CCCC--CCHHHHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHH
Q 001939 267 LPKD--AYTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWK 340 (993)
Q Consensus 267 ~~~~--~~~pdlL~~adl~It~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~ 340 (993)
.|++ ++++++|+.||++|..+ ..+++.||+++|+|+|+.+... ..+.++..+.|+.++..+ ++.|.
T Consensus 311 ~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~------~~e~i~~~~~g~~~~~~d--~~~la 382 (438)
T 3c48_A 311 LDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGG------LPIAVAEGETGLLVDGHS--PHAWA 382 (438)
T ss_dssp ECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCTT------HHHHSCBTTTEEEESSCC--HHHHH
T ss_pred cCCCChHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCCCC------hhHHhhCCCcEEECCCCC--HHHHH
Confidence 9998 45789999999999754 2468999999999999987432 344565666888887654 57899
Q ss_pred HHHHHHHhCCC
Q 001939 341 PYLERAISLKP 351 (993)
Q Consensus 341 ~~l~~ll~~~~ 351 (993)
++|.++++++.
T Consensus 383 ~~i~~l~~~~~ 393 (438)
T 3c48_A 383 DALATLLDDDE 393 (438)
T ss_dssp HHHHHHHHCHH
T ss_pred HHHHHHHcCHH
Confidence 99999998763
No 52
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.25 E-value=4e-10 Score=130.01 Aligned_cols=131 Identities=11% Similarity=0.124 Sum_probs=91.8
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCC-Ch--h-hHHH---hhCC----CCcEEEEeCCCCCC-----------CCCCeEEC
Q 001939 210 RKEVRKELGIEDDVKLLILNFGGQP-AG--W-KLKE---EYLP----SGWKCLVCGASDSQ-----------LPPNFIKL 267 (993)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~G~~~-~~--~-~ll~---~l~~----~~~~~vv~G~~~~~-----------l~~nv~~~ 267 (993)
+.++++.++++++ .++++.|+.. .. . .+++ .+.. +++.++++|..... ++.++.+.
T Consensus 239 ~~~~~~~~~~~~~--~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~ 316 (439)
T 3fro_A 239 KKSLLSKFGMDEG--VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVIT 316 (439)
T ss_dssp HHHHHHHHTCCSC--EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCTTEEEEC
T ss_pred HHHHHHHcCCCCC--cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEc
Confidence 4567888998655 6677888877 42 2 2333 2322 57788889876531 45455667
Q ss_pred CCCC--CHHHHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHH
Q 001939 268 PKDA--YTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKP 341 (993)
Q Consensus 268 ~~~~--~~pdlL~~adl~It~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~ 341 (993)
++.+ .++++|+.||++|..+ -.+++.||+++|+|+|+.+.+ ...+.+ ..|.|..++..+ ++.|.+
T Consensus 317 g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~------~~~e~~-~~~~g~~~~~~d--~~~la~ 387 (439)
T 3fro_A 317 EMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVG------GLRDII-TNETGILVKAGD--PGELAN 387 (439)
T ss_dssp SCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEESST------HHHHHC-CTTTCEEECTTC--HHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCC------CcceeE-EcCceEEeCCCC--HHHHHH
Confidence 8664 3678999999999643 336899999999999998632 223333 356898888665 589999
Q ss_pred HHHHHHh-CCC
Q 001939 342 YLERAIS-LKP 351 (993)
Q Consensus 342 ~l~~ll~-~~~ 351 (993)
+|.++++ ++.
T Consensus 388 ~i~~ll~~~~~ 398 (439)
T 3fro_A 388 AILKALELSRS 398 (439)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHhcCHH
Confidence 9999998 664
No 53
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.24 E-value=9.7e-11 Score=133.26 Aligned_cols=295 Identities=13% Similarity=0.063 Sum_probs=161.4
Q ss_pred CCcEEEEEecCCC---CcccHHHHHHHHHHHHHCCCeEEEEeCCCCccc-ccccCCCceEEeeeeccCCccccCccccCh
Q 001939 13 SKHLVFAYYVTGH---GFGHATRVVEVVRNLISAGHDVHVVTGAPDFVF-TSEIQSPRLFIRKVLLDCGAVQADALTVDR 88 (993)
Q Consensus 13 m~~~~Il~~v~g~---G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~-~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (993)
|++|+|+++.... ..|+...+..++++| +||+|++++....... ........+.+... ... .....
T Consensus 2 ~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~ 71 (394)
T 3okp_A 2 SASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYDKTLDYEVIRW--PRS------VMLPT 71 (394)
T ss_dssp --CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHHTTCSSEEEEE--SSS------SCCSC
T ss_pred CCCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhccccceEEEEc--ccc------ccccc
Confidence 4456777776422 368888899999999 6999999987643210 11001111222111 000 00000
Q ss_pred HHHHHHHHHHhhccHHHhHHHHHHHHhcCCCcEEEECC-Cc--hHHHHHHHcCCcEEEEecCchhHHHHHHHhhcccchH
Q 001939 89 LASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VP--VACRAAADAGIRSVCVTNFSWDFIYAEYVMAAGHHHR 165 (993)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~--~a~laA~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~ 165 (993)
........+++++.+||+|+.+. .+ ....+++..++|.+.++-.+....... .. ...
T Consensus 72 ---------------~~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~-~~----~~~ 131 (394)
T 3okp_A 72 ---------------PTTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVGWSM-LP----GSR 131 (394)
T ss_dssp ---------------HHHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHHHHTT-SH----HHH
T ss_pred ---------------hhhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchhhhhh-cc----hhh
Confidence 01223446678899999999765 22 334456778998444322221100000 00 000
Q ss_pred HHHHHHHhhccccceeeecCCC--------CCCCCCCceeecCcccccC----CcChHHHHHHhCCCCCCcEEEEEcCCC
Q 001939 166 SIVWQIAEDYSHCEFLIRLPGY--------CPMPAFRDVIDVPLVVRRL----HKSRKEVRKELGIEDDVKLLILNFGGQ 233 (993)
Q Consensus 166 ~i~~~l~~~y~~~d~ll~~p~~--------~~~p~~~~v~~vp~~~~~~----~~~~~~~r~~l~~~~~~~~Vlvs~G~~ 233 (993)
.+.+ ..+..++.++..... ...+....+.+.|+..... ...+.++++.++++++.+ ++++.|+.
T Consensus 132 ~~~~---~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~G~~ 207 (394)
T 3okp_A 132 QSLR---KIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLGFTDTTP-VIACNSRL 207 (394)
T ss_dssp HHHH---HHHHHCSEEEESCHHHHHHHHHHHCSSSEEEECCCCBCTTTSCCCCHHHHHHHHHHTTCCTTCC-EEEEESCS
T ss_pred HHHH---HHHHhCCEEEEcCHHHHHHHHHhcCCCCCeEEecCCcCHHHcCCCCchhhHHHHHhcCCCcCce-EEEEEecc
Confidence 0001 111122222211100 0000001122222222111 112456788888875544 56677776
Q ss_pred CCh--h-hHHHh---hC--CCCcEEEEeCCCCCC---------CCCCeEECCCC--CCHHHHHhhcCEEEe---------
Q 001939 234 PAG--W-KLKEE---YL--PSGWKCLVCGASDSQ---------LPPNFIKLPKD--AYTPDFMAASDCMLG--------- 285 (993)
Q Consensus 234 ~~~--~-~ll~~---l~--~~~~~~vv~G~~~~~---------l~~nv~~~~~~--~~~pdlL~~adl~It--------- 285 (993)
... . .+++. +. .+++.++++|..... +.+||++.|++ ++++++|+.||++|.
T Consensus 208 ~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~ 287 (394)
T 3okp_A 208 VPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGL 287 (394)
T ss_dssp CGGGCHHHHHHHHHHHHHHSTTCEEEEECCCTTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGT
T ss_pred ccccCHHHHHHHHHHHHhhCCCeEEEEEcCchHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCEEEecCccccccc
Confidence 542 2 23332 21 257888888876531 35799999998 467799999999997
Q ss_pred --cCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 286 --KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 286 --~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
-+..+++.||+++|+|+|+.+.....|. +.. |.|+.++..+ ++.|.++|.++++++
T Consensus 288 ~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~------i~~-~~g~~~~~~d--~~~l~~~i~~l~~~~ 345 (394)
T 3okp_A 288 DVEGLGIVYLEAQACGVPVIAGTSGGAPET------VTP-ATGLVVEGSD--VDKLSELLIELLDDP 345 (394)
T ss_dssp BCCSSCHHHHHHHHTTCCEEECSSTTGGGG------CCT-TTEEECCTTC--HHHHHHHHHHHHTCH
T ss_pred cccccCcHHHHHHHcCCCEEEeCCCChHHH------Hhc-CCceEeCCCC--HHHHHHHHHHHHhCH
Confidence 4455789999999999999876544443 333 4888887655 689999999999876
No 54
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.24 E-value=7.2e-10 Score=126.61 Aligned_cols=289 Identities=15% Similarity=0.114 Sum_probs=155.1
Q ss_pred CcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHHHHHHHHHHhhccHHH
Q 001939 26 GFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLASLEKYSETAVAPRKS 105 (993)
Q Consensus 26 G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (993)
..|.-.....++++|.++||+|++++......... ..+.+.+... .......+.... .. ..
T Consensus 26 ~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~--~~~~i~~~~~----~~~~~~~~~~~~----~~---------~~ 86 (394)
T 2jjm_A 26 VGGSGVVGTELGKQLAERGHEIHFITSGLPFRLNK--VYPNIYFHEV----TVNQYSVFQYPP----YD---------LA 86 (394)
T ss_dssp -CHHHHHHHHHHHHHHHTTCEEEEECSSCC----C--CCTTEEEECC----CCC----CCSCC----HH---------HH
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCcccc--cCCceEEEec----cccccccccccc----cc---------HH
Confidence 34778888999999999999999998753211111 1122222221 000000000000 00 01
Q ss_pred hHHHHHHHHhcCCCcEEEECCC-ch---HHHHHHHc--CCcEEEEecCchhHHHHHHHhhcccchHHHHHHHHhhccccc
Q 001939 106 ILKDEVEWLNSIKADLVVSDVV-PV---ACRAAADA--GIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCE 179 (993)
Q Consensus 106 ~l~~~~~~L~~~kPDlVVsD~~-~~---a~laA~~~--gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~~l~~~y~~~d 179 (993)
......+++++.+||+|+++.. +. +.++.... ++|+|...+-.+.. +... ......+... .+..++
T Consensus 87 ~~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~----~~~~-~~~~~~~~~~---~~~~ad 158 (394)
T 2jjm_A 87 LASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDIT----VLGS-DPSLNNLIRF---GIEQSD 158 (394)
T ss_dssp HHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHH----TTTT-CTTTHHHHHH---HHHHSS
T ss_pred HHHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCccc----ccCC-CHHHHHHHHH---HHhhCC
Confidence 1233456778899999998753 22 22333343 49988752211100 0000 0000111111 111222
Q ss_pred eeeecCCC--------CCCCCCCceeecCccccc-CCcChHHHHHHhCCCCCCcEEEEEcCCCCCh--h-hHHHh---hC
Q 001939 180 FLIRLPGY--------CPMPAFRDVIDVPLVVRR-LHKSRKEVRKELGIEDDVKLLILNFGGQPAG--W-KLKEE---YL 244 (993)
Q Consensus 180 ~ll~~p~~--------~~~p~~~~v~~vp~~~~~-~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~-~ll~~---l~ 244 (993)
.++..... ...+....+.+.|+.... ....+.++++.++++++.+ ++++.|+.... . .+++. +.
T Consensus 159 ~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~G~~~~~Kg~~~li~a~~~l~ 237 (394)
T 2jjm_A 159 VVTAVSHSLINETHELVKPNKDIQTVYNFIDERVYFKRDMTQLKKEYGISESEK-ILIHISNFRKVKRVQDVVQAFAKIV 237 (394)
T ss_dssp EEEESCHHHHHHHHHHTCCSSCEEECCCCCCTTTCCCCCCHHHHHHTTCC---C-EEEEECCCCGGGTHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHhhCCcccEEEecCCccHHhcCCcchHHHHHHcCCCCCCe-EEEEeeccccccCHHHHHHHHHHHH
Confidence 22221100 000111122233332221 1123456788888764544 55667776542 2 23332 21
Q ss_pred -CCCcEEEEeCCCCCC-----------CCCCeEECCCCCCHHHHHhhcCEEEe----cCChhHHHHHHHcCCcEEEEeCC
Q 001939 245 -PSGWKCLVCGASDSQ-----------LPPNFIKLPKDAYTPDFMAASDCMLG----KIGYGTVSEALAYKLPFVFVRRD 308 (993)
Q Consensus 245 -~~~~~~vv~G~~~~~-----------l~~nv~~~~~~~~~pdlL~~adl~It----~~G~~Tv~Eal~~GvP~l~ip~~ 308 (993)
..++.++++|..... +.+||.+.|+.++++++|+.||++|. -+..+++.||+++|+|+|+.+.+
T Consensus 238 ~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~~~ 317 (394)
T 2jjm_A 238 TEVDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVG 317 (394)
T ss_dssp HSSCCEEEEECCCTTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEEECCT
T ss_pred hhCCCEEEEECCchHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEEecCC
Confidence 135788888875431 35789999988889999999999994 34557899999999999999866
Q ss_pred CCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 309 YFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 309 ~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
...|. ++....|+.++..+ ++.|.++|.++++++
T Consensus 318 ~~~e~------v~~~~~g~~~~~~d--~~~la~~i~~l~~~~ 351 (394)
T 2jjm_A 318 GIPEV------IQHGDTGYLCEVGD--TTGVADQAIQLLKDE 351 (394)
T ss_dssp TSTTT------CCBTTTEEEECTTC--HHHHHHHHHHHHHCH
T ss_pred ChHHH------hhcCCceEEeCCCC--HHHHHHHHHHHHcCH
Confidence 55554 44456788887655 579999999999876
No 55
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.23 E-value=6.3e-11 Score=133.34 Aligned_cols=207 Identities=14% Similarity=0.163 Sum_probs=131.3
Q ss_pred CCEEEEEEeCCCCCCCCchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccccCCCCCcchhhHhhccccceEEEEe
Q 001939 630 DSISMLVSSAVPEGKGVSSSASVEVASMSAIAAAHGLNIHPRDLALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMV 709 (993)
Q Consensus 630 ~g~~i~i~s~iP~g~GLgSSAA~~Va~~~al~~~~g~~l~~~el~~la~~~E~~~~G~~~G~mDq~~~~~Gg~~~~~~i~ 709 (993)
.|++|.+.++||.++|||||||..+|++.|++.++++ +++|.++|..++. +...|+|||. +...
T Consensus 122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~sG----------s~~~s~~GG~---v~w~ 185 (414)
T 3f0n_A 122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGSG----------SACRSLYGGF---VEWQ 185 (414)
T ss_dssp SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHCG----------GGGGGGSSSE---EEEC
T ss_pred CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhCC----------CcchHhhCCE---EEEE
Confidence 4899999999999999999999999999999999997 4688888887643 3367999995 3332
Q ss_pred ec----Ccc-ceeeecCC---CCeEEEEEeCCCccccCCCCccchhhhhhcchhhHHhhhhccCcccCCCCCCCCCCCcc
Q 001939 710 CQ----PAE-LLGVVEIP---SHIRFWGIDSGIRHSVGGADYGSVRAGAFMGRKMIKSTASGMLPQSLPSSNGLNNIEPE 781 (993)
Q Consensus 710 ~~----~~~-~~~~v~~p---~~~~~ll~dSgv~~~~~~~~y~~~r~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~ 781 (993)
.. ... +..+++.+ ++++++++-......+.++ +.
T Consensus 186 ~~~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsS-----T~--------------------------------- 227 (414)
T 3f0n_A 186 MGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGS-----TV--------------------------------- 227 (414)
T ss_dssp CCSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCH-----HH---------------------------------
T ss_pred eccCCCCCceEEEEcccccCCCCceEEEEEeCccccCCCc-----hH---------------------------------
Confidence 11 111 11233321 4677666541111111110 00
Q ss_pred chhhHHHHHhhhhhHhhcCChHHHHHHHhhcCCccchhhhhhhhcCCCCCCceecCCCcccccccccccccch--hhHHH
Q 001939 782 VDGVELLEAEASLDYLCNLSPHRFEALYAKNIPESIVGEEFSKNYGDHNDPVTVIDPKRTYFVRAPVCHPIYE--NFRVK 859 (993)
Q Consensus 782 ~~~~~~l~~~~~~~~L~~~~~~~~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~E--~~Rv~ 859 (993)
.++ ..+|... ...+.+.. ..|+.
T Consensus 228 --------------~mr------------~~l~ts~-----------------------------~~~~~v~~~~~~~~~ 252 (414)
T 3f0n_A 228 --------------GMQ------------TSVETST-----------------------------LLKFRAESVVPERMK 252 (414)
T ss_dssp --------------HHH------------HHHHHCH-----------------------------HHHHHHHHTHHHHHH
T ss_pred --------------HHH------------hhcccCc-----------------------------cHHHHHHHHHHHHHH
Confidence 000 0000000 01222322 35788
Q ss_pred HHHHHHHccCChhHHHHHHHHHH----Hhhhhhhh----cCCCCchHHHHHHHHHHHhhhccccCCCCcccceeeecccc
Q 001939 860 AFKALLTAAASDDQLTSLGELLY----QCHYSYSA----CGLGSDGTDRLVQLVQEIQHSKVSKSKDGTLFGAKITGGGS 931 (993)
Q Consensus 860 ~~~~al~~~~~~~~l~~lG~Lm~----~sH~slr~----~~vs~~~lD~lv~~a~~~~~~~~~~~~~~g~~GakltGaG~ 931 (993)
.++++|.++ |++.||++|. +-|..|++ +-.-.|++.++++.++++.+. ..|++++.++|||
T Consensus 253 ~l~~AL~~g----D~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~------~~g~~~~~tsdAG- 321 (414)
T 3f0n_A 253 EMTRCIQEQ----DFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTH------HGQTKVAYTFDAG- 321 (414)
T ss_dssp HHHHHHHTT----CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHH------HTSCCEEEECCSS-
T ss_pred HHHHHHHcC----CHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHh------cCCceEEEEECCC-
Confidence 899999996 9999999865 35887776 122588999999988875210 0378999999999
Q ss_pred CceEEEEccCCcccHHHHHHHHHHHHh
Q 001939 932 GGTICVIGRNSLRSSEQVLEIQQRYKD 958 (993)
Q Consensus 932 GG~vi~l~~~~~~~~~~~~~i~~~y~~ 958 (993)
.+|+++.+.+ +.+++.+.+.+.|..
T Consensus 322 -Pnv~vl~~~~-~~~~v~~~l~~~f~~ 346 (414)
T 3f0n_A 322 -PNAVIFTLED-TVAEFVAAVRHSFPP 346 (414)
T ss_dssp -SCEEEEEEHH-HHHHHHHHHHHHSCC
T ss_pred -CCEEEEEecc-cHHHHHHHHHHhcCC
Confidence 7777665432 234677777666654
No 56
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.20 E-value=1.1e-09 Score=123.62 Aligned_cols=132 Identities=19% Similarity=0.218 Sum_probs=97.6
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCCh--h-hHHHhh--CC----CCcEEEEeCCCCCC----------CCCCeEECCCC
Q 001939 210 RKEVRKELGIEDDVKLLILNFGGQPAG--W-KLKEEY--LP----SGWKCLVCGASDSQ----------LPPNFIKLPKD 270 (993)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~-~ll~~l--~~----~~~~~vv~G~~~~~----------l~~nv~~~~~~ 270 (993)
+.++++.++++++. .++++.|+.... . .+++.+ +. +++.++++|..... +.+||++.|+.
T Consensus 183 ~~~~~~~~~~~~~~-~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~v~~~g~~ 261 (374)
T 2iw1_A 183 REIYRQKNGIKEQQ-NLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGR 261 (374)
T ss_dssp HHHHHHHTTCCTTC-EEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCCHHHHHHHHHHTCGGGEEEESCC
T ss_pred HHHHHHHhCCCCCC-eEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCCHHHHHHHHHHcCCCCcEEECCCc
Confidence 45678888886554 466677776542 2 233332 21 36788888876532 35799999998
Q ss_pred CCHHHHHhhcCEEEec----CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEe-cCCCChhhHHHHHHH
Q 001939 271 AYTPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMI-RRDLLTGHWKPYLER 345 (993)
Q Consensus 271 ~~~pdlL~~adl~It~----~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~-~~~~~~~~l~~~l~~ 345 (993)
++++++|+.||++|.. +..+++.||+++|+|+|+.+..... +.++..+.|+.+. ..+ ++.|.++|.+
T Consensus 262 ~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~------e~i~~~~~g~~~~~~~~--~~~l~~~i~~ 333 (374)
T 2iw1_A 262 NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYA------HYIADANCGTVIAEPFS--QEQLNEVLRK 333 (374)
T ss_dssp SCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTT------HHHHHHTCEEEECSSCC--HHHHHHHHHH
T ss_pred ccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEEecCCCch------hhhccCCceEEeCCCCC--HHHHHHHHHH
Confidence 8999999999999973 4557899999999999998854443 4477788898887 433 6899999999
Q ss_pred HHhCC
Q 001939 346 AISLK 350 (993)
Q Consensus 346 ll~~~ 350 (993)
+++++
T Consensus 334 l~~~~ 338 (374)
T 2iw1_A 334 ALTQS 338 (374)
T ss_dssp HHHCH
T ss_pred HHcCh
Confidence 99876
No 57
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.20 E-value=2.2e-10 Score=131.68 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=99.4
Q ss_pred HHHHHHhC-CCCCCcEEEEEcC---CCCCh-hhHHHh---hC--CCCcEEEE-eCCCCC---------CCCCCeEECCCC
Q 001939 211 KEVRKELG-IEDDVKLLILNFG---GQPAG-WKLKEE---YL--PSGWKCLV-CGASDS---------QLPPNFIKLPKD 270 (993)
Q Consensus 211 ~~~r~~l~-~~~~~~~Vlvs~G---~~~~~-~~ll~~---l~--~~~~~~vv-~G~~~~---------~l~~nv~~~~~~ 270 (993)
+++++.++ +++++++|+++.+ +.+.+ ..++++ +. .+++.+++ +|.++. ...+|++++++.
T Consensus 217 ~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~~~~~~~l~~~~~~~~~v~~~~~l 296 (396)
T 3dzc_A 217 ATLESQFPMLDASKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLNPNVREPVNKLLKGVSNIVLIEPQ 296 (396)
T ss_dssp HHHHHTCTTCCTTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHTTTCTTEEEECCC
T ss_pred HHHHHHhCccCCCCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCChHHHHHHHHHHcCCCCEEEeCCC
Confidence 56777888 4667788888773 33333 223332 21 14666665 465421 124689997776
Q ss_pred C--CHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHh
Q 001939 271 A--YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAIS 348 (993)
Q Consensus 271 ~--~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~ 348 (993)
. +++.+|++||++|+.+| +++.||+++|+|+|+++ ..++.+ .+.+.|.++.+.. +++.|.+++.++++
T Consensus 297 g~~~~~~l~~~ad~vv~~SG-g~~~EA~a~G~PvV~~~--~~~~~~----e~v~~G~~~lv~~---d~~~l~~ai~~ll~ 366 (396)
T 3dzc_A 297 QYLPFVYLMDRAHIILTDSG-GIQEEAPSLGKPVLVMR--ETTERP----EAVAAGTVKLVGT---NQQQICDALSLLLT 366 (396)
T ss_dssp CHHHHHHHHHHCSEEEESCS-GGGTTGGGGTCCEEECC--SSCSCH----HHHHHTSEEECTT---CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCEEEECCc-cHHHHHHHcCCCEEEcc--CCCcch----HHHHcCceEEcCC---CHHHHHHHHHHHHc
Confidence 4 46799999999999998 55589999999999975 334432 2456788866643 36899999999998
Q ss_pred CCCCcc---------CCCCHHHHHHHHHH
Q 001939 349 LKPCYE---------GGINGGEVAAHILQ 368 (993)
Q Consensus 349 ~~~~~~---------~~~~ga~~~a~~i~ 368 (993)
++..+. ..++.++++++.|.
T Consensus 367 d~~~~~~m~~~~~~~~~~~aa~ri~~~l~ 395 (396)
T 3dzc_A 367 DPQAYQAMSQAHNPYGDGKACQRIADILA 395 (396)
T ss_dssp CHHHHHHHHTSCCTTCCSCHHHHHHHHHH
T ss_pred CHHHHHHHhhccCCCcCChHHHHHHHHHh
Confidence 763211 56777777777664
No 58
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.20 E-value=3.6e-10 Score=130.15 Aligned_cols=148 Identities=10% Similarity=-0.036 Sum_probs=100.4
Q ss_pred HHHHHhCCCCCCcEEEEEcCCC---CCh-hhHHHh---hC--CCCcEEEEe-CCCCC--C-------CCCCeEECCCCC-
Q 001939 212 EVRKELGIEDDVKLLILNFGGQ---PAG-WKLKEE---YL--PSGWKCLVC-GASDS--Q-------LPPNFIKLPKDA- 271 (993)
Q Consensus 212 ~~r~~l~~~~~~~~Vlvs~G~~---~~~-~~ll~~---l~--~~~~~~vv~-G~~~~--~-------l~~nv~~~~~~~- 271 (993)
+.++.+ ++++++++++|.. +.+ ..++++ +. .+++.+++. |+++. + ..+|++++++..
T Consensus 216 ~~~~~l---~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~v~l~~~l~~ 292 (403)
T 3ot5_A 216 PILENL---GDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILGGHERIHLIEPLDA 292 (403)
T ss_dssp HHHHSC---TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCH
T ss_pred HHHHhc---cCCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHhCCCCCEEEeCCCCH
Confidence 444444 3567787776632 222 223332 21 246666654 65421 0 246899998876
Q ss_pred -CHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 272 -YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 272 -~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
+++.+|++||++|+.+|..+ .||+++|+|+|+++. ..+++. +.+.|.++.+.. +++.|.+++.+++.++
T Consensus 293 ~~~~~l~~~ad~vv~~SGg~~-~EA~a~g~PvV~~~~--~~~~~e----~v~~g~~~lv~~---d~~~l~~ai~~ll~~~ 362 (403)
T 3ot5_A 293 IDFHNFLRKSYLVFTDSGGVQ-EEAPGMGVPVLVLRD--TTERPE----GIEAGTLKLIGT---NKENLIKEALDLLDNK 362 (403)
T ss_dssp HHHHHHHHHEEEEEECCHHHH-HHGGGTTCCEEECCS--SCSCHH----HHHHTSEEECCS---CHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhcCEEEECCccHH-HHHHHhCCCEEEecC--CCcchh----heeCCcEEEcCC---CHHHHHHHHHHHHcCH
Confidence 57799999999999987433 799999999999963 334332 357788887763 4688999999999776
Q ss_pred CCc---------cCCCCHHHHHHHHHHHHHc
Q 001939 351 PCY---------EGGINGGEVAAHILQETAI 372 (993)
Q Consensus 351 ~~~---------~~~~~ga~~~a~~i~~~~~ 372 (993)
..+ -..++.++++++.|.+++.
T Consensus 363 ~~~~~m~~~~~~~g~~~aa~rI~~~l~~~l~ 393 (403)
T 3ot5_A 363 ESHDKMAQAANPYGDGFAANRILAAIKSHFE 393 (403)
T ss_dssp HHHHHHHHSCCTTCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCcccCCcHHHHHHHHHHHHhC
Confidence 322 1578899999999998863
No 59
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=99.17 E-value=9.1e-10 Score=126.77 Aligned_cols=299 Identities=13% Similarity=0.025 Sum_probs=164.1
Q ss_pred CCCcEEEEEecCCCC-cccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCCccccCccccChHH
Q 001939 12 SSKHLVFAYYVTGHG-FGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCGAVQADALTVDRLA 90 (993)
Q Consensus 12 ~m~~~~Il~~v~g~G-~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 90 (993)
.|++|+|+++..... .|+......++++|.++||+|++++......+..... . +... . .+. ....... .
T Consensus 37 ~~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~--~--~~~~-~-~~~---~~~~~~~-~ 106 (416)
T 2x6q_A 37 KLKGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTK--T--FHNA-L-QGN---ESLKLTE-E 106 (416)
T ss_dssp TTTTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHH--H--HHHH-H-TTC---CSCCCCH-H
T ss_pred hhhccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhc--c--ccee-e-ccc---ccccccH-H
Confidence 477899988887654 6777888899999999999999887653211000000 0 0000 0 000 0011111 0
Q ss_pred HHHHHHHHhhccHHHhHHHHHHHHhcCCCcEEEECCCchHHHHH-HHcCCcEEEEecCchhHHHHHHHhhcccchHHHHH
Q 001939 91 SLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAA-ADAGIRSVCVTNFSWDFIYAEYVMAAGHHHRSIVW 169 (993)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~a~laA-~~~gIP~V~i~~~~~~~~~~~y~~~~~~~~~~i~~ 169 (993)
....+. .......+++++.+||+|+++.......++ ....+|+|...+..+..... ....
T Consensus 107 ~~~~~~--------~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~-----------~~~~ 167 (416)
T 2x6q_A 107 MKELYL--------NVNRENSKFIDLSSFDYVLVHDPQPAALIEFYEKKSPWLWRCHIDLSSPNR-----------EFWE 167 (416)
T ss_dssp HHHHHH--------HHHHHHHHSSCGGGSSEEEEESSTTGGGGGGSCCCSCEEEECCSCCSSCCH-----------HHHH
T ss_pred HHHHHH--------HHHHHHHHHHhhcCCCEEEEeccchhhHHHHHHhcCCEEEEEccccCCccH-----------HHHH
Confidence 011111 112233456778899999987632221111 11238888763322110000 0011
Q ss_pred HHHhhccccceee-ecCCCC--CCC-CCCceeecCccccc--C-Cc---ChHHHHHHhCCCCCCcEEEEEcCCCCC--hh
Q 001939 170 QIAEDYSHCEFLI-RLPGYC--PMP-AFRDVIDVPLVVRR--L-HK---SRKEVRKELGIEDDVKLLILNFGGQPA--GW 237 (993)
Q Consensus 170 ~l~~~y~~~d~ll-~~p~~~--~~p-~~~~v~~vp~~~~~--~-~~---~~~~~r~~l~~~~~~~~Vlvs~G~~~~--~~ 237 (993)
.+...+..++..+ ..+... ..+ ....+.+.|+.... + .. .+.++++.++++++.++ +++.|.... +.
T Consensus 168 ~~~~~~~~~~~~i~~~s~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-i~~vGrl~~~Kg~ 246 (416)
T 2x6q_A 168 FLRRFVEKYDRYIFHLPEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFDVDPEKPI-ITQVSRFDPWKGI 246 (416)
T ss_dssp HHHHHHTTSSEEEESSGGGSCTTSCTTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTTCCTTSCE-EEEECCCCTTSCH
T ss_pred HHHHHHHhCCEEEEechHHHHhhCCccceEEeCCCCChhhhcccccChhhHHHHHHHhCCCCCCcE-EEEEeccccccCH
Confidence 1111222333332 211110 011 11122333332211 1 11 23457788888766654 556676554 22
Q ss_pred -hHHHh---hC--CCCcEEEEeCCCCC----------------CCCCCeEECCCCC-----CHHHHHhhcCEEEecC---
Q 001939 238 -KLKEE---YL--PSGWKCLVCGASDS----------------QLPPNFIKLPKDA-----YTPDFMAASDCMLGKI--- 287 (993)
Q Consensus 238 -~ll~~---l~--~~~~~~vv~G~~~~----------------~l~~nv~~~~~~~-----~~pdlL~~adl~It~~--- 287 (993)
.+++. +. .+++.++++|.... .+.+||++.|+.+ +++++|+.||++|..+
T Consensus 247 ~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E 326 (416)
T 2x6q_A 247 FDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIRE 326 (416)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSC
T ss_pred HHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCCcC
Confidence 23332 21 25788888887642 0357999988764 5778999999999765
Q ss_pred -ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 288 -GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 288 -G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
..+++.||+++|+|+|+.+. ..+.+.++..+.|+.++ +++.|.++|.++++++
T Consensus 327 ~~~~~~lEAma~G~PvI~~~~------~g~~e~i~~~~~g~l~~----d~~~la~~i~~ll~~~ 380 (416)
T 2x6q_A 327 GFGLTVTEAMWKGKPVIGRAV------GGIKFQIVDGETGFLVR----DANEAVEVVLYLLKHP 380 (416)
T ss_dssp SSCHHHHHHHHTTCCEEEESC------HHHHHHCCBTTTEEEES----SHHHHHHHHHHHHHCH
T ss_pred CCccHHHHHHHcCCCEEEccC------CCChhheecCCCeEEEC----CHHHHHHHHHHHHhCH
Confidence 45789999999999999863 24556666667898886 4689999999999876
No 60
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.16 E-value=5.7e-10 Score=126.81 Aligned_cols=151 Identities=13% Similarity=0.049 Sum_probs=101.6
Q ss_pred HHHHHhC-CCCCCcEEEEEcCCCC---Ch-hhHHHh---hC--CCCcEEEE-eCCCCC--C-------CCCCeEECCCC-
Q 001939 212 EVRKELG-IEDDVKLLILNFGGQP---AG-WKLKEE---YL--PSGWKCLV-CGASDS--Q-------LPPNFIKLPKD- 270 (993)
Q Consensus 212 ~~r~~l~-~~~~~~~Vlvs~G~~~---~~-~~ll~~---l~--~~~~~~vv-~G~~~~--~-------l~~nv~~~~~~- 270 (993)
++++.++ +++++++++++.|... ++ ..+++. +. .+++.+++ .|.... + ..+||+++++.
T Consensus 193 ~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~~~~v~~~g~~~ 272 (384)
T 1vgv_A 193 ELAANYPFIDPDKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQE 272 (384)
T ss_dssp HHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTTCTTEEEECCCC
T ss_pred HHHHhccccCCCCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhcCCCEEEeCCCC
Confidence 4566676 6556778888888543 22 223332 21 24666665 464321 1 13689995544
Q ss_pred -CCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhC
Q 001939 271 -AYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (993)
Q Consensus 271 -~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (993)
.+++++|+.||+||+.+| +++.||+++|+|+|+.+.... . ..+.+.|.|+.+.. +++.|.++|.+++++
T Consensus 273 ~~~~~~~~~~ad~~v~~Sg-~~~lEA~a~G~PvI~~~~~~~--~----~e~v~~g~g~lv~~---d~~~la~~i~~ll~d 342 (384)
T 1vgv_A 273 YLPFVWLMNHAWLILTDSG-GIQEEAPSLGKPVLVMRDTTE--R----PEAVTAGTVRLVGT---DKQRIVEEVTRLLKD 342 (384)
T ss_dssp HHHHHHHHHHCSEEEESSS-TGGGTGGGGTCCEEEESSCCS--C----HHHHHHTSEEEECS---SHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcEEEECCc-chHHHHHHcCCCEEEccCCCC--c----chhhhCCceEEeCC---CHHHHHHHHHHHHhC
Confidence 357799999999999986 558899999999999985222 1 12455679988865 578999999999987
Q ss_pred CCCcc---------CCCCHHHHHHHHHHHHHc
Q 001939 350 KPCYE---------GGINGGEVAAHILQETAI 372 (993)
Q Consensus 350 ~~~~~---------~~~~ga~~~a~~i~~~~~ 372 (993)
+..+. ......+++++.++++..
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 374 (384)
T 1vgv_A 343 ENEYQAMSRAHNPYGDGQACSRILEALKNNRI 374 (384)
T ss_dssp HHHHHHHHSSCCTTCCSCHHHHHHHHHHHTCC
T ss_pred hHHHhhhhhccCCCcCCCHHHHHHHHHHHHHH
Confidence 63211 356778888888887654
No 61
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.10 E-value=2.2e-09 Score=126.86 Aligned_cols=131 Identities=17% Similarity=0.034 Sum_probs=90.8
Q ss_pred HHHHHHhC-----CCCCCcEEEEEcCCCCCh--h-hHHHhh--C----CCCcEEEEeCC--CC--------------C--
Q 001939 211 KEVRKELG-----IEDDVKLLILNFGGQPAG--W-KLKEEY--L----PSGWKCLVCGA--SD--------------S-- 258 (993)
Q Consensus 211 ~~~r~~l~-----~~~~~~~Vlvs~G~~~~~--~-~ll~~l--~----~~~~~~vv~G~--~~--------------~-- 258 (993)
.++++.++ ++++.+ ++++.|..... . .+++.+ + +..+.++++|. .. .
T Consensus 245 ~~~r~~~~~~~~~~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~ 323 (499)
T 2r60_A 245 AKITKYLERDLGSERMELP-AIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGK 323 (499)
T ss_dssp HHHHHHHHHHSCGGGTTSC-EEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCCCc-EEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHH
Confidence 56777776 654555 56777876553 2 233332 1 12346777887 21 1
Q ss_pred --------CCCCCeEECCCC--CCHHHHHhhc----CEEEecC---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHH
Q 001939 259 --------QLPPNFIKLPKD--AYTPDFMAAS----DCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNML 320 (993)
Q Consensus 259 --------~l~~nv~~~~~~--~~~pdlL~~a----dl~It~~---G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l 320 (993)
.+.++|+++|++ ++++++|+.| |++|..+ | .+++.||+++|+|+|+.... ...+.+
T Consensus 324 l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~------g~~e~v 397 (499)
T 2r60_A 324 IIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNG------GPAEIL 397 (499)
T ss_dssp HHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSB------HHHHHT
T ss_pred HHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCC------CHHHHh
Confidence 146789999997 4678999999 9999643 2 36899999999999998632 344556
Q ss_pred HHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 321 EFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 321 ~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
.....|+.++..+ ++.|.++|.++++++
T Consensus 398 ~~~~~g~l~~~~d--~~~la~~i~~ll~~~ 425 (499)
T 2r60_A 398 DGGKYGVLVDPED--PEDIARGLLKAFESE 425 (499)
T ss_dssp GGGTSSEEECTTC--HHHHHHHHHHHHSCH
T ss_pred cCCceEEEeCCCC--HHHHHHHHHHHHhCH
Confidence 6666788887655 578999999999876
No 62
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.05 E-value=1.3e-09 Score=123.74 Aligned_cols=141 Identities=13% Similarity=-0.031 Sum_probs=93.8
Q ss_pred CCcEEEEEcCCCCC--h-hhHHHh---hC--CCCcEEEE-eCCCCC--C-------CCCCeEECCCCC--CHHHHHhhcC
Q 001939 222 DVKLLILNFGGQPA--G-WKLKEE---YL--PSGWKCLV-CGASDS--Q-------LPPNFIKLPKDA--YTPDFMAASD 281 (993)
Q Consensus 222 ~~~~Vlvs~G~~~~--~-~~ll~~---l~--~~~~~~vv-~G~~~~--~-------l~~nv~~~~~~~--~~pdlL~~ad 281 (993)
++++|+++.|.... + ..++++ +. .+++.+++ +|.+.. + ..++|+++++.. +++++|+.||
T Consensus 197 ~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~~~~~~~l~~~~~~~~~v~~~g~~g~~~~~~~~~~ad 276 (376)
T 1v4v_A 197 EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNPVVREAVFPVLKGVRNFVLLDPLEYGSMAALMRASL 276 (376)
T ss_dssp SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEE
T ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHhccCCCEEEECCCCHHHHHHHHHhCc
Confidence 45677777774321 2 123332 21 24666665 475431 1 135899985443 5679999999
Q ss_pred EEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc-------
Q 001939 282 CMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE------- 354 (993)
Q Consensus 282 l~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~------- 354 (993)
+||+.+| +.+.||+++|+|+|+++... ++.. +.+.|.|+.+. .+++.|.++|.++++++..+.
T Consensus 277 ~~v~~S~-g~~lEA~a~G~PvI~~~~~~--~~~~----~~~~g~g~lv~---~d~~~la~~i~~ll~d~~~~~~~~~~~~ 346 (376)
T 1v4v_A 277 LLVTDSG-GLQEEGAALGVPVVVLRNVT--ERPE----GLKAGILKLAG---TDPEGVYRVVKGLLENPEELSRMRKAKN 346 (376)
T ss_dssp EEEESCH-HHHHHHHHTTCCEEECSSSC--SCHH----HHHHTSEEECC---SCHHHHHHHHHHHHTCHHHHHHHHHSCC
T ss_pred EEEECCc-CHHHHHHHcCCCEEeccCCC--cchh----hhcCCceEECC---CCHHHHHHHHHHHHhChHhhhhhcccCC
Confidence 9999885 45779999999999986432 2222 35678888775 257899999999998763211
Q ss_pred --CCCCHHHHHHHHHHHHHc
Q 001939 355 --GGINGGEVAAHILQETAI 372 (993)
Q Consensus 355 --~~~~ga~~~a~~i~~~~~ 372 (993)
.....++++++.+.+++.
T Consensus 347 ~~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 347 PYGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp SSCCSCHHHHHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHhc
Confidence 456788888888888753
No 63
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.00 E-value=5.6e-10 Score=124.97 Aligned_cols=260 Identities=15% Similarity=0.100 Sum_probs=146.2
Q ss_pred CCcEEEEEecCC---------------CCcccHHHHHHHHHHHHHCCCeEEEEeCCCCcccccccCCCceEEeeeeccCC
Q 001939 13 SKHLVFAYYVTG---------------HGFGHATRVVEVVRNLISAGHDVHVVTGAPDFVFTSEIQSPRLFIRKVLLDCG 77 (993)
Q Consensus 13 m~~~~Il~~v~g---------------~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~~~~~i~~~~~~~~~~~~~~g 77 (993)
|+.|+|+++... .+.|.-.....++++|.++||+|++++........ ..+.+..
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~-----~~~~~~~------ 69 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR-----PGLTVVP------ 69 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS-----TTEEECS------
T ss_pred CCccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC-----Ccceecc------
Confidence 667889888766 23677888889999999999999999876422111 1111110
Q ss_pred ccccCccccChHHHHHHHHHHhhccHHHhHHHHHHHHhcCCCcEEEECCCchHHHHHHHcCCcEEEEecCchh--HHHHH
Q 001939 78 AVQADALTVDRLASLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWD--FIYAE 155 (993)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~~~~a~laA~~~gIP~V~i~~~~~~--~~~~~ 155 (993)
... . ....+++++.+||+|+++.......++...++| |...+-.|. .....
T Consensus 70 --------~~~---~---------------~~l~~~l~~~~~Dvi~~~~~~~~~~~~~~~~~p-v~~~h~~~~~~~~~d~ 122 (342)
T 2iuy_A 70 --------AGE---P---------------EEIERWLRTADVDVVHDHSGGVIGPAGLPPGTA-FISSHHFTTRPVNPVG 122 (342)
T ss_dssp --------CCS---H---------------HHHHHHHHHCCCSEEEECSSSSSCSTTCCTTCE-EEEEECSSSBCSCCTT
T ss_pred --------CCc---H---------------HHHHHHHHhcCCCEEEECCchhhHHHHhhcCCC-EEEecCCCCCcccceE
Confidence 000 0 022456778899999987743333345667899 654221111 00000
Q ss_pred HHhhcccchHHHHHHHHhhccccceeeecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCC
Q 001939 156 YVMAAGHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPA 235 (993)
Q Consensus 156 y~~~~~~~~~~i~~~l~~~y~~~d~ll~~p~~~~~p~~~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~ 235 (993)
.+.. .+ ...+.+.. +....+.+.|+........+. .. ++.+ ++++.|+...
T Consensus 123 ii~~----S~----~~~~~~~~-------------~~~~~vi~ngvd~~~~~~~~~------~~-~~~~-~i~~vG~~~~ 173 (342)
T 2iuy_A 123 CTYS----SR----AQRAHCGG-------------GDDAPVIPIPVDPARYRSAAD------QV-AKED-FLLFMGRVSP 173 (342)
T ss_dssp EEES----CH----HHHHHTTC-------------CTTSCBCCCCBCGGGSCCSTT------CC-CCCS-CEEEESCCCG
T ss_pred EEEc----CH----HHHHHHhc-------------CCceEEEcCCCChhhcCcccc------cC-CCCC-EEEEEecccc
Confidence 0000 01 11111111 011122233332211111110 11 2334 4556677654
Q ss_pred h--h-hHHHhhCCCCcEEEEeCCCCCC---------CCCCeEECCCCCCH--HHHHhhcCEEEecC--------------
Q 001939 236 G--W-KLKEEYLPSGWKCLVCGASDSQ---------LPPNFIKLPKDAYT--PDFMAASDCMLGKI-------------- 287 (993)
Q Consensus 236 ~--~-~ll~~l~~~~~~~vv~G~~~~~---------l~~nv~~~~~~~~~--pdlL~~adl~It~~-------------- 287 (993)
. . .+++.+...++.++++|..... +++||++.|++++. +++|+.||++|..+
T Consensus 174 ~Kg~~~li~a~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~ 253 (342)
T 2iuy_A 174 HKGALEAAAFAHACGRRLVLAGPAWEPEYFDEITRRYGSTVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEP 253 (342)
T ss_dssp GGTHHHHHHHHHHHTCCEEEESCCCCHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCC
T ss_pred ccCHHHHHHHHHhcCcEEEEEeCcccHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccC
Confidence 2 2 2333321126778888876531 35899999999754 79999999999432
Q ss_pred ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHH--cCcEEEEecCCCChhhHHHHHHHHHh
Q 001939 288 GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEF--YQGGVEMIRRDLLTGHWKPYLERAIS 348 (993)
Q Consensus 288 G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~--~G~g~~l~~~~~~~~~l~~~l~~ll~ 348 (993)
-.+++.||+++|+|+|+.+.. .+.+.++. ...|+.++. +.+.|.++|.++++
T Consensus 254 ~~~~~~EAma~G~PvI~s~~~------~~~e~~~~~~~~~g~~~~~---d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 254 GATVVSEAAVSGTPVVGTGNG------CLAEIVPSVGEVVGYGTDF---APDEARRTLAGLPA 307 (342)
T ss_dssp CCHHHHHHHHTTCCEEECCTT------THHHHGGGGEEECCSSSCC---CHHHHHHHHHTSCC
T ss_pred ccHHHHHHHhcCCCEEEcCCC------ChHHHhcccCCCceEEcCC---CHHHHHHHHHHHHH
Confidence 246899999999999998743 24455666 556766665 46788888888764
No 64
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=98.97 E-value=1.2e-08 Score=116.56 Aligned_cols=291 Identities=15% Similarity=0.075 Sum_probs=156.1
Q ss_pred cEEEEEecCCC---CcccHHHHHHHHHHHHHCCCeEEEEeCCCCcc-cccccCCCceEEeeeeccCCccccCccccChHH
Q 001939 15 HLVFAYYVTGH---GFGHATRVVEVVRNLISAGHDVHVVTGAPDFV-FTSEIQSPRLFIRKVLLDCGAVQADALTVDRLA 90 (993)
Q Consensus 15 ~~~Il~~v~g~---G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~~~-~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 90 (993)
.|+|+|+.... ..|+-.....++++|.++||+|++++...... ..... ... + . .. .....
T Consensus 20 ~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~------~~~-~-~--~~-----~~~~~- 83 (406)
T 2gek_A 20 HMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYV------VSG-G-K--AV-----PIPYN- 83 (406)
T ss_dssp -CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTE------EEC-C-C--CC-----------
T ss_pred cceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCccc------ccC-C-c--EE-----ecccc-
Confidence 47787777542 25777899999999999999999998764221 11100 000 0 0 00 00000
Q ss_pred HHHHHHHHhhccHHHhHHHHHHHHhcCCCcEEEECC---CchHHHHHHHcCCcEEEEecCchh--HHHHHHHhhcccchH
Q 001939 91 SLEKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV---VPVACRAAADAGIRSVCVTNFSWD--FIYAEYVMAAGHHHR 165 (993)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~---~~~a~laA~~~gIP~V~i~~~~~~--~~~~~y~~~~~~~~~ 165 (993)
.....+.. .. .......+++++.+||+|+.+. ...+..+++..++|+|...+-.+. .....+. .
T Consensus 84 --~~~~~~~~-~~-~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~----~--- 152 (406)
T 2gek_A 84 --GSVARLRF-GP-ATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTTKSLTLSVFQ----G--- 152 (406)
T ss_dssp ---------C-CH-HHHHHHHHHHHHHCCSEEEEECCCSSSHHHHHHHHEESSEEEEECCCCCSHHHHHHHH----S---
T ss_pred --CCcccccc-cH-HHHHHHHHHHHhcCCCEEEECCccchHHHHHHHHhcCCCEEEEEcCcchhhhhHHHHH----H---
Confidence 00000000 11 1223446678888999999765 233555667779998876332211 1111000 0
Q ss_pred HHHHHHHhhccccceeeecCCCC------CCCCCCce-eecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCC-CCh-
Q 001939 166 SIVWQIAEDYSHCEFLIRLPGYC------PMPAFRDV-IDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQ-PAG- 236 (993)
Q Consensus 166 ~i~~~l~~~y~~~d~ll~~p~~~------~~p~~~~v-~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~-~~~- 236 (993)
.+...+..++.++...... ..+. .++ .+.|+........+ ...+.+.+. .++++.|+. ...
T Consensus 153 ----~~~~~~~~~d~ii~~s~~~~~~~~~~~~~-~~~vi~~~v~~~~~~~~~----~~~~~~~~~-~~i~~~G~~~~~~K 222 (406)
T 2gek_A 153 ----ILRPYHEKIIGRIAVSDLARRWQMEALGS-DAVEIPNGVDVASFADAP----LLDGYPREG-RTVLFLGRYDEPRK 222 (406)
T ss_dssp ----TTHHHHTTCSEEEESSHHHHHHHHHHHSS-CEEECCCCBCHHHHHTCC----CCTTCSCSS-CEEEEESCTTSGGG
T ss_pred ----HHHHHHhhCCEEEECCHHHHHHHHHhcCC-CcEEecCCCChhhcCCCc----hhhhccCCC-eEEEEEeeeCcccc
Confidence 0001112222222211000 0000 111 11221111000000 001122233 466777877 442
Q ss_pred -h-hHHH---hhC--CCCcEEEEeCCCCCC--------CCCCeEECCCCCCH--HHHHhhcCEEEecCC-----hhHHHH
Q 001939 237 -W-KLKE---EYL--PSGWKCLVCGASDSQ--------LPPNFIKLPKDAYT--PDFMAASDCMLGKIG-----YGTVSE 294 (993)
Q Consensus 237 -~-~ll~---~l~--~~~~~~vv~G~~~~~--------l~~nv~~~~~~~~~--pdlL~~adl~It~~G-----~~Tv~E 294 (993)
. .+++ .+. .+++.++++|..... +.+||++.|++++. +++|+.||++|..+. .+++.|
T Consensus 223 g~~~li~a~~~l~~~~~~~~l~i~G~~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~E 302 (406)
T 2gek_A 223 GMAVLLAALPKLVARFPDVEILIVGRGDEDELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVE 302 (406)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEEEESCSCHHHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCeEEEEEcCCcHHHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHHH
Confidence 2 2333 222 247888888876531 25789999998754 799999999997542 458999
Q ss_pred HHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 295 ALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 295 al~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
|+++|+|+|+.+. ....+.+.....|+.++..+ .+.|.++|.++++++
T Consensus 303 a~a~G~PvI~~~~------~~~~e~i~~~~~g~~~~~~d--~~~l~~~i~~l~~~~ 350 (406)
T 2gek_A 303 AMAAGTAVVASDL------DAFRRVLADGDAGRLVPVDD--ADGMAAALIGILEDD 350 (406)
T ss_dssp HHHHTCEEEECCC------HHHHHHHTTTTSSEECCTTC--HHHHHHHHHHHHHCH
T ss_pred HHHcCCCEEEecC------CcHHHHhcCCCceEEeCCCC--HHHHHHHHHHHHcCH
Confidence 9999999999763 34556677667888887655 578999999999876
No 65
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=98.82 E-value=2.7e-07 Score=104.19 Aligned_cols=147 Identities=13% Similarity=0.035 Sum_probs=94.0
Q ss_pred HHHHHHhCCCCCCcEEEEEcCCCCC---hh-hHHHh---hC--CCCcEEEEe-CCCC--CC-----CC--CCeEECCCCC
Q 001939 211 KEVRKELGIEDDVKLLILNFGGQPA---GW-KLKEE---YL--PSGWKCLVC-GASD--SQ-----LP--PNFIKLPKDA 271 (993)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~G~~~~---~~-~ll~~---l~--~~~~~~vv~-G~~~--~~-----l~--~nv~~~~~~~ 271 (993)
.++++.+ +++++++++.|.... +. .++++ +. .+++.+++. |... .+ +. +||++.++..
T Consensus 196 ~~~~~~~---~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~v~~~g~~~ 272 (375)
T 3beo_A 196 HPVLEKL---GNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVYPVHMNPVVRETANDILGDYGRIHLIEPLD 272 (375)
T ss_dssp CHHHHTT---TTSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCC
T ss_pred HHHHHhc---cCCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEEeCCCCHHHHHHHHHHhhccCCEEEeCCCC
Confidence 3455544 245677788886542 22 23332 21 246665543 3221 01 12 6899966654
Q ss_pred --CHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhC
Q 001939 272 --YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISL 349 (993)
Q Consensus 272 --~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~ 349 (993)
+++++|+.||+||+.+| +++.||+++|+|+|+.+. .... ..+.+.|.|+.++. +++.|.++|.+++++
T Consensus 273 ~~~~~~~~~~ad~~v~~sg-~~~lEA~a~G~Pvi~~~~--~~~~----~e~v~~g~g~~v~~---d~~~la~~i~~ll~~ 342 (375)
T 3beo_A 273 VIDFHNVAARSYLMLTDSG-GVQEEAPSLGVPVLVLRD--TTER----PEGIEAGTLKLAGT---DEETIFSLADELLSD 342 (375)
T ss_dssp HHHHHHHHHTCSEEEECCH-HHHHHHHHHTCCEEECSS--CCSC----HHHHHTTSEEECCS---CHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcEEEECCC-ChHHHHHhcCCCEEEecC--CCCC----ceeecCCceEEcCC---CHHHHHHHHHHHHhC
Confidence 46799999999999885 669999999999999853 1222 22456778988763 568999999999987
Q ss_pred CCCcc---------CCCCHHHHHHHHHHHH
Q 001939 350 KPCYE---------GGINGGEVAAHILQET 370 (993)
Q Consensus 350 ~~~~~---------~~~~ga~~~a~~i~~~ 370 (993)
+..+. ......+++++.++++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 372 (375)
T 3beo_A 343 KEAHDKMSKASNPYGDGRASERIVEAILKH 372 (375)
T ss_dssp HHHHHHHCCCCCTTCCSCHHHHHHHHHHHH
T ss_pred hHhHhhhhhcCCCCCCCcHHHHHHHHHHHH
Confidence 63211 2456777777777665
No 66
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=98.79 E-value=6e-08 Score=113.91 Aligned_cols=130 Identities=19% Similarity=0.096 Sum_probs=91.1
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCCCh--hh-HHHh---hCCCCcEEEEeCCCCC---C--------CCCCeE-ECCCCC
Q 001939 210 RKEVRKELGIEDDVKLLILNFGGQPAG--WK-LKEE---YLPSGWKCLVCGASDS---Q--------LPPNFI-KLPKDA 271 (993)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~~-ll~~---l~~~~~~~vv~G~~~~---~--------l~~nv~-~~~~~~ 271 (993)
+..+++.++++++...++++.|..... .. +++. +..+++.++++|.... + +++||+ +.++..
T Consensus 277 ~~~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~ 356 (485)
T 1rzu_A 277 KKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNE 356 (485)
T ss_dssp HHHHHHHHTCCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCH
T ss_pred HHHHHHhcCCCCCCCeEEEEEccCccccCHHHHHHHHHHHHhcCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCH
Confidence 456888899876523367788877653 22 3332 2224788888887642 1 467897 678865
Q ss_pred CH-HHHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc---------CcEEEEecCCCChh
Q 001939 272 YT-PDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY---------QGGVEMIRRDLLTG 337 (993)
Q Consensus 272 ~~-pdlL~~adl~It~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~---------G~g~~l~~~~~~~~ 337 (993)
.. +++|+.||++|..+ -.+++.|||++|+|+|+... ..+.+.+... +.|+.++..+ ++
T Consensus 357 ~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~------gg~~e~v~~~~~~~~~~~~~~G~l~~~~d--~~ 428 (485)
T 1rzu_A 357 PLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVART------GGLADTVIDANHAALASKAATGVQFSPVT--LD 428 (485)
T ss_dssp HHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESS------HHHHHHCCBCCHHHHHTTCCCBEEESSCS--HH
T ss_pred HHHHHHHhcCCEEEECcccCCCCHHHHHHHHCCCCEEEeCC------CChhheecccccccccccCCcceEeCCCC--HH
Confidence 44 68999999999643 34689999999999999863 2344555544 6888887655 57
Q ss_pred hHHHHHHHHH
Q 001939 338 HWKPYLERAI 347 (993)
Q Consensus 338 ~l~~~l~~ll 347 (993)
.|.++|.+++
T Consensus 429 ~la~~i~~ll 438 (485)
T 1rzu_A 429 GLKQAIRRTV 438 (485)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8999999998
No 67
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=98.78 E-value=5.4e-08 Score=111.10 Aligned_cols=243 Identities=12% Similarity=0.038 Sum_probs=137.6
Q ss_pred hHHHHHHHHhcCCCcEEEEC--C-CchHHHHHHHcCCcEEEE-ecC-chhHHHHHHHhhcccchHHHHHHHHhhccccce
Q 001939 106 ILKDEVEWLNSIKADLVVSD--V-VPVACRAAADAGIRSVCV-TNF-SWDFIYAEYVMAAGHHHRSIVWQIAEDYSHCEF 180 (993)
Q Consensus 106 ~l~~~~~~L~~~kPDlVVsD--~-~~~a~laA~~~gIP~V~i-~~~-~~~~~~~~y~~~~~~~~~~i~~~l~~~y~~~d~ 180 (993)
.+....++|++++||+|++. . ..++.++|...+||++.+ ... ++. .+++ ..+.+.+.... ++.
T Consensus 82 ~~~~l~~~l~~~kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~eaglrs~~----~~~p------ee~nR~~~~~~--a~~ 149 (385)
T 4hwg_A 82 VIEKVDEVLEKEKPDAVLFYGDTNSCLSAIAAKRRKIPIFHMEAGNRCFD----QRVP------EEINRKIIDHI--SDV 149 (385)
T ss_dssp HHHHHHHHHHHHCCSEEEEESCSGGGGGHHHHHHTTCCEEEESCCCCCSC----TTST------HHHHHHHHHHH--CSE
T ss_pred HHHHHHHHHHhcCCcEEEEECCchHHHHHHHHHHhCCCEEEEeCCCcccc----ccCc------HHHHHHHHHhh--hce
Confidence 34556778899999999963 3 334477889999997766 221 111 0011 00111111111 011
Q ss_pred eeecCC--------CCCCCCCCceeecCccccc----CCcChHHHHHHhCCCCCCcEEEEEcCCCC---Ch---hhHHHh
Q 001939 181 LIRLPG--------YCPMPAFRDVIDVPLVVRR----LHKSRKEVRKELGIEDDVKLLILNFGGQP---AG---WKLKEE 242 (993)
Q Consensus 181 ll~~p~--------~~~~p~~~~v~~vp~~~~~----~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~---~~---~~ll~~ 242 (993)
++.... ....++...+++.|.+... +...+.++++.+++++ ++++++++|... .. ..++++
T Consensus 150 ~~~~te~~~~~l~~~G~~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lgl~~-~~~iLvt~hr~e~~~~~~~l~~ll~a 228 (385)
T 4hwg_A 150 NITLTEHARRYLIAEGLPAELTFKSGSHMPEVLDRFMPKILKSDILDKLSLTP-KQYFLISSHREENVDVKNNLKELLNS 228 (385)
T ss_dssp EEESSHHHHHHHHHTTCCGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTTCCT-TSEEEEEECCC-----CHHHHHHHHH
T ss_pred eecCCHHHHHHHHHcCCCcCcEEEECCchHHHHHHhhhhcchhHHHHHcCCCc-CCEEEEEeCCchhcCcHHHHHHHHHH
Confidence 110000 0000111123344433211 1122345778888864 678888887532 11 123332
Q ss_pred ---hCCC-CcEEEE-eCCCCC----CC------CCCeEECCCCC--CHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEE
Q 001939 243 ---YLPS-GWKCLV-CGASDS----QL------PPNFIKLPKDA--YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFV 305 (993)
Q Consensus 243 ---l~~~-~~~~vv-~G~~~~----~l------~~nv~~~~~~~--~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~i 305 (993)
+... ++.+++ .++... .. .+|+++++... ++..+|++||++|+.+|. .+.||+++|+|+|.+
T Consensus 229 l~~l~~~~~~~vv~p~~p~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~SGg-v~~EA~alG~Pvv~~ 307 (385)
T 4hwg_A 229 LQMLIKEYNFLIIFSTHPRTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDSGT-ITEEASILNLPALNI 307 (385)
T ss_dssp HHHHHHHHCCEEEEEECHHHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECCTT-HHHHHHHTTCCEEEC
T ss_pred HHHHHhcCCeEEEEECChHHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECCcc-HHHHHHHcCCCEEEc
Confidence 2111 455554 332110 12 35788876554 356899999999999985 579999999999999
Q ss_pred eCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCCCcc----------CCCCHHHHHHHHHHHHH
Q 001939 306 RRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKPCYE----------GGINGGEVAAHILQETA 371 (993)
Q Consensus 306 p~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~~~~----------~~~~ga~~~a~~i~~~~ 371 (993)
+. ..|.+. .++.|.++.+.. +++.+.+++.++++++..+. ..++.++++++.|.+++
T Consensus 308 ~~--~ter~e----~v~~G~~~lv~~---d~~~i~~ai~~ll~d~~~~~~m~~~~~~~~g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 308 RE--AHERPE----GMDAGTLIMSGF---KAERVLQAVKTITEEHDNNKRTQGLVPDYNEAGLVSKKILRIVLSYV 374 (385)
T ss_dssp SS--SCSCTH----HHHHTCCEECCS---SHHHHHHHHHHHHTTCBTTBCCSCCCHHHHTCCCHHHHHHHHHHHHH
T ss_pred CC--Cccchh----hhhcCceEEcCC---CHHHHHHHHHHHHhChHHHHHhhccCCCCCCCChHHHHHHHHHHHHh
Confidence 73 233111 356788877643 46889999999998875432 46788888888888874
No 68
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=98.65 E-value=2.5e-07 Score=108.65 Aligned_cols=130 Identities=16% Similarity=0.121 Sum_probs=88.8
Q ss_pred hHHHHHHhCCCCC-CcEEEEEcCCCCCh--h-hHHHh---hCCCCcEEEEeCCCCC---C--------CCCCeE-ECCCC
Q 001939 210 RKEVRKELGIEDD-VKLLILNFGGQPAG--W-KLKEE---YLPSGWKCLVCGASDS---Q--------LPPNFI-KLPKD 270 (993)
Q Consensus 210 ~~~~r~~l~~~~~-~~~Vlvs~G~~~~~--~-~ll~~---l~~~~~~~vv~G~~~~---~--------l~~nv~-~~~~~ 270 (993)
+.++++.++++++ ...++++.|..... . .+++. +..+++.++++|...+ . ++++|. +.++.
T Consensus 277 ~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~ 356 (485)
T 2qzs_A 277 KRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYH 356 (485)
T ss_dssp HHHHHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCC
T ss_pred HHHHHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCC
Confidence 4568888888741 33456666765542 2 23332 2224788888886641 1 457886 77886
Q ss_pred CCH-HHHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc---------CcEEEEecCCCCh
Q 001939 271 AYT-PDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY---------QGGVEMIRRDLLT 336 (993)
Q Consensus 271 ~~~-pdlL~~adl~It~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~---------G~g~~l~~~~~~~ 336 (993)
... +++|+.||++|..+ -.+++.|||++|+|+|+... ..+.+.+... +.|+.++..+ +
T Consensus 357 ~~~~~~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~------gg~~e~v~~~~~~~~~~~~~~G~l~~~~d--~ 428 (485)
T 2qzs_A 357 EAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRT------GGLADTVSDCSLENLADGVASGFVFEDSN--A 428 (485)
T ss_dssp HHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESS------HHHHHHCCBCCHHHHHTTCCCBEEECSSS--H
T ss_pred HHHHHHHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEECCC------CCccceeccCccccccccccceEEECCCC--H
Confidence 443 68999999999644 34689999999999999863 2344445544 6888887655 5
Q ss_pred hhHHHHHHHHH
Q 001939 337 GHWKPYLERAI 347 (993)
Q Consensus 337 ~~l~~~l~~ll 347 (993)
+.|.++|.+++
T Consensus 429 ~~la~~i~~ll 439 (485)
T 2qzs_A 429 WSLLRAIRRAF 439 (485)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78999999998
No 69
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=98.54 E-value=7.7e-07 Score=101.96 Aligned_cols=131 Identities=11% Similarity=-0.005 Sum_probs=84.5
Q ss_pred HHHHHhCCCC-CCcEEEEEcCCCCCh--h-hHHHh---hC--CCCcEEEEeCCCCCC-----------------CCCC--
Q 001939 212 EVRKELGIED-DVKLLILNFGGQPAG--W-KLKEE---YL--PSGWKCLVCGASDSQ-----------------LPPN-- 263 (993)
Q Consensus 212 ~~r~~l~~~~-~~~~Vlvs~G~~~~~--~-~ll~~---l~--~~~~~~vv~G~~~~~-----------------l~~n-- 263 (993)
+.++.+++++ +...++++.|+.... . .+++. +. .+++.++++|..... +.++
T Consensus 171 ~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~ 250 (413)
T 3oy2_A 171 DARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFT 250 (413)
T ss_dssp THHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHH
T ss_pred HHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccc
Confidence 4566777754 134677788886543 2 23332 21 256777777654321 3443
Q ss_pred -----eEECCCCC--CHHHHHhhcCEEEec----CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCc-------
Q 001939 264 -----FIKLPKDA--YTPDFMAASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQG------- 325 (993)
Q Consensus 264 -----v~~~~~~~--~~pdlL~~adl~It~----~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~------- 325 (993)
+.+.|+.+ .++++|+.||++|.. +..+++.||+++|+|+|+.+.. .+.+.+.....
T Consensus 251 ~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~------g~~e~v~~~~~~~i~~~~ 324 (413)
T 3oy2_A 251 HLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVG------GADDYFSGDCVYKIKPSA 324 (413)
T ss_dssp HHTTEEEECSCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEEECCH------HHHHHSCTTTSEEECCCE
T ss_pred cccceeeccCcCCHHHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCC------ChHHHHccCccccccccc
Confidence 67778876 678999999999963 3345899999999999998632 33333433222
Q ss_pred --------EE--EEecCCCChhhHHHHHHHHHhCCC
Q 001939 326 --------GV--EMIRRDLLTGHWKPYLERAISLKP 351 (993)
Q Consensus 326 --------g~--~l~~~~~~~~~l~~~l~~ll~~~~ 351 (993)
|+ .+... +++.|.++| ++++++.
T Consensus 325 ~~~~~~~~G~~gl~~~~--d~~~la~~i-~l~~~~~ 357 (413)
T 3oy2_A 325 WISVDDRDGIGGIEGII--DVDDLVEAF-TFFKDEK 357 (413)
T ss_dssp EEECTTTCSSCCEEEEC--CHHHHHHHH-HHTTSHH
T ss_pred ccccccccCcceeeCCC--CHHHHHHHH-HHhcCHH
Confidence 55 66554 468999999 9998763
No 70
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=98.51 E-value=1.2e-05 Score=92.37 Aligned_cols=133 Identities=8% Similarity=-0.093 Sum_probs=91.3
Q ss_pred CcEEEEEcCCCCChhhHHHhhC--CCCcEEEEeCCCCC-C--CCCCeEECCCCC--CHHHHHhhcCEEEec----CChhH
Q 001939 223 VKLLILNFGGQPAGWKLKEEYL--PSGWKCLVCGASDS-Q--LPPNFIKLPKDA--YTPDFMAASDCMLGK----IGYGT 291 (993)
Q Consensus 223 ~~~Vlvs~G~~~~~~~ll~~l~--~~~~~~vv~G~~~~-~--l~~nv~~~~~~~--~~pdlL~~adl~It~----~G~~T 291 (993)
.+.++++.|.......++..+. .+++.++++|.+.. . +.+||++.|+++ .++++|+.||++|.. +-.++
T Consensus 221 ~~~~i~~vGrl~~~Kg~~~~l~~~~~~~~l~ivG~g~~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~ 300 (406)
T 2hy7_A 221 EGIHAVAVGSMLFDPEFFVVASKAFPQVTFHVIGSGMGRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVY 300 (406)
T ss_dssp SSEEEEEECCTTBCHHHHHHHHHHCTTEEEEEESCSSCCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTT
T ss_pred CCcEEEEEeccccccCHHHHHHHhCCCeEEEEEeCchHHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchH
Confidence 3356778888776433343321 35788888887542 2 578999999985 578999999999953 23357
Q ss_pred HHHHH-------HcCCcEEEEeCCCCCChHHHHHHHHHcCcEEE-EecCCCChhhHHHHHHHHHhCCCCccCCCCHHHHH
Q 001939 292 VSEAL-------AYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVE-MIRRDLLTGHWKPYLERAISLKPCYEGGINGGEVA 363 (993)
Q Consensus 292 v~Eal-------~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~-l~~~~~~~~~l~~~l~~ll~~~~~~~~~~~ga~~~ 363 (993)
+.||+ ++|+|+|+... +.....|.. +...+ ++.|.++|.++++++.........-+..
T Consensus 301 ~lEAm~Kl~eYla~G~PVIas~~------------v~~~~~G~l~v~~~d--~~~la~ai~~ll~~~~~~~~~~~sw~~~ 366 (406)
T 2hy7_A 301 LADSSMKLLQYDFFGLPAVCPNA------------VVGPYKSRFGYTPGN--ADSVIAAITQALEAPRVRYRQCLNWSDT 366 (406)
T ss_dssp HHHHCHHHHHHHHHTCCEEEEGG------------GTCSCSSEEEECTTC--HHHHHHHHHHHHHCCCCCCSCCCBHHHH
T ss_pred HHHHHHHHHHHhhCCCcEEEehh------------cccCcceEEEeCCCC--HHHHHHHHHHHHhCcchhhhhcCCHHHH
Confidence 89999 99999999863 334455777 77665 5899999999999885222233344444
Q ss_pred HHHHHH
Q 001939 364 AHILQE 369 (993)
Q Consensus 364 a~~i~~ 369 (993)
++.+.+
T Consensus 367 a~~~~~ 372 (406)
T 2hy7_A 367 TDRVLD 372 (406)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444443
No 71
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.43 E-value=6.7e-07 Score=107.21 Aligned_cols=132 Identities=11% Similarity=0.004 Sum_probs=87.9
Q ss_pred HHHHhCCCCCCcEEEEEcCCCCC-h-hhHHHh---hC--CCCcEEEEeC-CCCC-----------CCC-CCeEECCCCC-
Q 001939 213 VRKELGIEDDVKLLILNFGGQPA-G-WKLKEE---YL--PSGWKCLVCG-ASDS-----------QLP-PNFIKLPKDA- 271 (993)
Q Consensus 213 ~r~~l~~~~~~~~Vlvs~G~~~~-~-~~ll~~---l~--~~~~~~vv~G-~~~~-----------~l~-~nv~~~~~~~- 271 (993)
.|+.++++++. +|+ ..|+... + ..+++. +. .++++++++| .... .+. ++|++.|+++
T Consensus 367 ~r~~~~~~~~~-~v~-~~g~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~ 444 (568)
T 2vsy_A 367 SRTQCGLPEQG-VVL-CCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPH 444 (568)
T ss_dssp CTGGGTCCTTS-CEE-EECCCGGGCCHHHHHHHHHHHHHCTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCH
T ss_pred CccccCCCCCC-EEE-EeCCccccCCHHHHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCH
Confidence 56677876444 444 4455443 2 223332 21 3578888888 4331 134 7899999986
Q ss_pred -CHHHHHhhcCEEEec---CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHH
Q 001939 272 -YTPDFMAASDCMLGK---IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAI 347 (993)
Q Consensus 272 -~~pdlL~~adl~It~---~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll 347 (993)
+++++|+.||+||.. ++.+++.||+++|+|+|+++...+.- ...+..+...|....+.. +++.|.++|.+++
T Consensus 445 ~~~~~~~~~adv~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s-~~~~~~l~~~g~~e~v~~---~~~~la~~i~~l~ 520 (568)
T 2vsy_A 445 PQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAA-RVAGSLNHHLGLDEMNVA---DDAAFVAKAVALA 520 (568)
T ss_dssp HHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGG-SHHHHHHHHHTCGGGBCS---SHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEeeCCCCCCcHHHHHHHhCCCCEEeccCCCchH-HHHHHHHHHCCChhhhcC---CHHHHHHHHHHHh
Confidence 678999999999943 45578999999999999987432211 123456677777655543 5688999999999
Q ss_pred hCC
Q 001939 348 SLK 350 (993)
Q Consensus 348 ~~~ 350 (993)
+++
T Consensus 521 ~~~ 523 (568)
T 2vsy_A 521 SDP 523 (568)
T ss_dssp HCH
T ss_pred cCH
Confidence 876
No 72
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=98.36 E-value=2e-06 Score=99.13 Aligned_cols=95 Identities=12% Similarity=0.038 Sum_probs=71.3
Q ss_pred CcEEEEeCCCCCC----CCCCeEECCCCC--CHHHHHhhcCEEEecC---Ch-hHHHHHHHcCCcEEEEeCCCCCChHHH
Q 001939 247 GWKCLVCGASDSQ----LPPNFIKLPKDA--YTPDFMAASDCMLGKI---GY-GTVSEALAYKLPFVFVRRDYFNEEPFL 316 (993)
Q Consensus 247 ~~~~vv~G~~~~~----l~~nv~~~~~~~--~~pdlL~~adl~It~~---G~-~Tv~Eal~~GvP~l~ip~~~~~EQ~~n 316 (993)
++.++++|..... +.+||++.|+++ .++++|+.||+||..+ |+ .++.|||++|+|+|+ ...+..|.
T Consensus 276 ~~~l~ivG~~~~~~~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~-~~~g~~e~--- 351 (413)
T 2x0d_A 276 EWKIISVGEKHKDIALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRVIT-NKYENKDL--- 351 (413)
T ss_dssp GCEEEEEESCCCCEEEETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEE-ECBTTBCG---
T ss_pred ceEEEEEcCCchhhhcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEE-eCCCcchh---
Confidence 3788888875433 457899999874 5789999999999633 33 578999999999999 43333343
Q ss_pred HHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 317 RNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 317 a~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
++....|+.++..+ ++.|.++|.++++++
T Consensus 352 ---v~~~~~G~lv~~~d--~~~la~ai~~ll~~~ 380 (413)
T 2x0d_A 352 ---SNWHSNIVSLEQLN--PENIAETLVELCMSF 380 (413)
T ss_dssp ---GGTBTTEEEESSCS--HHHHHHHHHHHHHHT
T ss_pred ---hhcCCCEEEeCCCC--HHHHHHHHHHHHcCH
Confidence 44455788887665 578999999999877
No 73
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=98.31 E-value=2.5e-05 Score=96.61 Aligned_cols=176 Identities=13% Similarity=0.049 Sum_probs=103.4
Q ss_pred HHhCC--CCCCcEEEEEcCCCCCh--h-hHHHhh--C---CCCcEEEEeCCCCC----------------------CCCC
Q 001939 215 KELGI--EDDVKLLILNFGGQPAG--W-KLKEEY--L---PSGWKCLVCGASDS----------------------QLPP 262 (993)
Q Consensus 215 ~~l~~--~~~~~~Vlvs~G~~~~~--~-~ll~~l--~---~~~~~~vv~G~~~~----------------------~l~~ 262 (993)
+.+++ +++++ ++++.|..... . .+++++ + .+++.++++|.... .+.+
T Consensus 562 ~~lg~l~~~~~~-vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~ 640 (816)
T 3s28_A 562 EHLCVLKDKKKP-ILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNG 640 (816)
T ss_dssp TEESCBSCTTSC-EEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBB
T ss_pred HHhcccCCCCCe-EEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCC
Confidence 34444 33444 56777876653 2 233322 1 13578888887661 0457
Q ss_pred CeEECCCCCC------HHHHHh-hcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEec
Q 001939 263 NFIKLPKDAY------TPDFMA-ASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIR 331 (993)
Q Consensus 263 nv~~~~~~~~------~pdlL~-~adl~It~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~ 331 (993)
+|+++|++.+ ++.+|+ ++|+||..+ -..++.||+++|+|+|+....+ ..+.+.....|+.++.
T Consensus 641 ~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG------~~EiV~dg~~Gllv~p 714 (816)
T 3s28_A 641 QFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGG------PAEIIVHGKSGFHIDP 714 (816)
T ss_dssp BEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBT------HHHHCCBTTTBEEECT
T ss_pred cEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCC------hHHHHccCCcEEEeCC
Confidence 8999998764 346666 589999643 3468999999999999986432 2344556667988887
Q ss_pred CCCChhhHHHHHHHHH----hCCCCcc----------CCCCHHHHHHHHHHHHHcc---CccccCCCCcchhhhHhhhhh
Q 001939 332 RDLLTGHWKPYLERAI----SLKPCYE----------GGINGGEVAAHILQETAIG---KNYASDKLSGARRLRDAIIFG 394 (993)
Q Consensus 332 ~~~~~~~l~~~l~~ll----~~~~~~~----------~~~~ga~~~a~~i~~~~~~---~~~~~~~~~Ga~~Lr~a~~~~ 394 (993)
.+ ++.|.++|.+++ .++..+. ...-.-...++.+.++... -+..+... ....|..+++-
T Consensus 715 ~D--~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~g~wk~vs~~~--r~~~~ryle~~ 790 (816)
T 3s28_A 715 YH--GDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLD--RLEARRYLEMF 790 (816)
T ss_dssp TS--HHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHhhhcchhh--hHHHHHHHHHH
Confidence 65 578888886665 6663221 1222333334433332210 01112222 44555567777
Q ss_pred hhhcccC
Q 001939 395 YELQRVP 401 (993)
Q Consensus 395 ~~~q~~~ 401 (993)
|.+|+-|
T Consensus 791 ~~l~~~~ 797 (816)
T 3s28_A 791 YALKYRP 797 (816)
T ss_dssp HHHTHHH
T ss_pred HHHhhhh
Confidence 7777754
No 74
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=98.26 E-value=4.5e-05 Score=86.50 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=61.3
Q ss_pred CCeEECCCCCCHHHHHhhcCEEEe-----cCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCCh
Q 001939 262 PNFIKLPKDAYTPDFMAASDCMLG-----KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLT 336 (993)
Q Consensus 262 ~nv~~~~~~~~~pdlL~~adl~It-----~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~ 336 (993)
.++.+.++..+++++|+.||+++. .+|..++.||+++|+|+|+-|... ......+.+...|+++.. .+ +
T Consensus 260 ~~v~~~~~~~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~--~~~e~~~~~~~~G~l~~~--~d--~ 333 (374)
T 2xci_A 260 GDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTH--KVNDLKEFLEKEGAGFEV--KN--E 333 (374)
T ss_dssp SSEEECCSSSCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCT--TSHHHHHHHHHTTCEEEC--CS--H
T ss_pred CcEEEECCHHHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCcc--ChHHHHHHHHHCCCEEEe--CC--H
Confidence 467888888899999999999664 234578999999999999865322 223345556667877655 33 5
Q ss_pred hhHHHHHHHHHhC
Q 001939 337 GHWKPYLERAISL 349 (993)
Q Consensus 337 ~~l~~~l~~ll~~ 349 (993)
+.|.++|.+++++
T Consensus 334 ~~La~ai~~ll~d 346 (374)
T 2xci_A 334 TELVTKLTELLSV 346 (374)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhH
Confidence 7899999999987
No 75
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=98.01 E-value=2.4e-05 Score=78.59 Aligned_cols=122 Identities=14% Similarity=-0.039 Sum_probs=86.4
Q ss_pred CCCCCcEEEEEcCCCCCh--h-hHHHh--hCCCCcEEEEeCCCCCC-------------CCCCeEECCCCCC--HHHHHh
Q 001939 219 IEDDVKLLILNFGGQPAG--W-KLKEE--YLPSGWKCLVCGASDSQ-------------LPPNFIKLPKDAY--TPDFMA 278 (993)
Q Consensus 219 ~~~~~~~Vlvs~G~~~~~--~-~ll~~--l~~~~~~~vv~G~~~~~-------------l~~nv~~~~~~~~--~pdlL~ 278 (993)
++.+++ ++++.|+.... . .+++. .+ +++.++++|..... +++||++.+++++ ++++|+
T Consensus 19 ~~~~~~-~i~~~G~~~~~Kg~~~li~a~~~l-~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~ 96 (177)
T 2f9f_A 19 FKCYGD-FWLSVNRIYPEKRIELQLEVFKKL-QDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYS 96 (177)
T ss_dssp CCCCCS-CEEEECCSSGGGTHHHHHHHHHHC-TTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHH
T ss_pred cCCCCC-EEEEEeccccccCHHHHHHHHHhC-CCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHH
Confidence 444555 45677776643 2 23332 22 56777778765431 3569999999976 789999
Q ss_pred hcCEEEec----CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCCC
Q 001939 279 ASDCMLGK----IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLKP 351 (993)
Q Consensus 279 ~adl~It~----~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~~ 351 (993)
.||++|.. +...++.||+++|+|+|+.+. ..+.+.++....|+.+ .. +.+.|.++|.++++++.
T Consensus 97 ~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~------~~~~e~i~~~~~g~~~-~~--d~~~l~~~i~~l~~~~~ 164 (177)
T 2f9f_A 97 RCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNE------GGFKETVINEKTGYLV-NA--DVNEIIDAMKKVSKNPD 164 (177)
T ss_dssp HCSEEEECCSSCCSCHHHHHHHHTTCCEEEESS------HHHHHHCCBTTTEEEE-CS--CHHHHHHHHHHHHHCTT
T ss_pred hCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCC------CCHHHHhcCCCccEEe-CC--CHHHHHHHHHHHHhCHH
Confidence 99999972 233589999999999999762 2455566666788888 44 36899999999998874
No 76
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=97.90 E-value=0.0012 Score=78.40 Aligned_cols=131 Identities=17% Similarity=0.139 Sum_probs=83.3
Q ss_pred HHHHHHhCCC--CCCcEEEEEcCCCCCh--hh-HHH---hhCCCCcEEEEeCCCCCC-----------CCCCeEECCCCC
Q 001939 211 KEVRKELGIE--DDVKLLILNFGGQPAG--WK-LKE---EYLPSGWKCLVCGASDSQ-----------LPPNFIKLPKDA 271 (993)
Q Consensus 211 ~~~r~~l~~~--~~~~~Vlvs~G~~~~~--~~-ll~---~l~~~~~~~vv~G~~~~~-----------l~~nv~~~~~~~ 271 (993)
..+++.++++ ++.| ++++.|..... .. +++ .+...++.+++.|.+... ++.++.+.+..+
T Consensus 313 ~~l~~~~gl~~d~~~p-~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~ 391 (536)
T 3vue_A 313 EALQAEAGLPVDRKIP-LIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFN 391 (536)
T ss_dssp HHHHHHTTSCCCTTSC-EEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCC
T ss_pred HHHHHhcCCCCCCCCc-EEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEecc
Confidence 3456677765 4455 45667776653 22 333 355567778888776531 477888766543
Q ss_pred --CHHHHHhhcCEEEecC---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCC--------CChh
Q 001939 272 --YTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRD--------LLTG 337 (993)
Q Consensus 272 --~~pdlL~~adl~It~~---G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~--------~~~~ 337 (993)
.++.+++.||+||..+ | ..+++|||++|+|+|+.... ...+.++...-|..+.... .+++
T Consensus 392 ~~~~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~g------G~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~ 465 (536)
T 3vue_A 392 APLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTG------GLVDTVIEGKTGFHMGRLSVDCKVVEPSDVK 465 (536)
T ss_dssp HHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCT------HHHHHCCBTTTEEECCCCCSCTTCCCHHHHH
T ss_pred HHHHHHHHHhhheeecccccCCCCHHHHHHHHcCCCEEEcCCC------CchheeeCCCCccccccCCCceeEECCCCHH
Confidence 2457899999999753 2 25899999999999997632 3444455544565443221 1246
Q ss_pred hHHHHHHHHHh
Q 001939 338 HWKPYLERAIS 348 (993)
Q Consensus 338 ~l~~~l~~ll~ 348 (993)
.|.++|++++.
T Consensus 466 ~la~ai~ral~ 476 (536)
T 3vue_A 466 KVAATLKRAIK 476 (536)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888888775
No 77
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=97.82 E-value=3.3e-05 Score=78.72 Aligned_cols=129 Identities=12% Similarity=0.106 Sum_probs=92.6
Q ss_pred hHHHHHHhCCCCCCcEEEEEcCCCC-Ch--h-hHHH---hhC--C--CCcEEEEeCCCC--C--C-------CCCCeEE-
Q 001939 210 RKEVRKELGIEDDVKLLILNFGGQP-AG--W-KLKE---EYL--P--SGWKCLVCGASD--S--Q-------LPPNFIK- 266 (993)
Q Consensus 210 ~~~~r~~l~~~~~~~~Vlvs~G~~~-~~--~-~ll~---~l~--~--~~~~~vv~G~~~--~--~-------l~~nv~~- 266 (993)
+..+++.++++ +.+ ++++.|+.. .. . .+++ .+. . +++.++++|... . . ++ ||++
T Consensus 24 ~~~~r~~~~~~-~~~-~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~ 100 (200)
T 2bfw_A 24 KKSLLSKFGMD-EGV-TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVI 100 (200)
T ss_dssp HHHHHHHTTCC-SCE-EEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEE
T ss_pred HHHHHHHcCCC-CCC-EEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHHhcC-CEEEE
Confidence 55688889886 344 566778776 42 2 2333 332 2 467888888765 1 1 34 9999
Q ss_pred CCCCC--CHHHHHhhcCEEEecC---C-hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHH
Q 001939 267 LPKDA--YTPDFMAASDCMLGKI---G-YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWK 340 (993)
Q Consensus 267 ~~~~~--~~pdlL~~adl~It~~---G-~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~ 340 (993)
.++++ .++++|+.||++|... | ..++.||+++|+|+|+.+. ..+.+.+ ..+.|+.++..+ .+.|.
T Consensus 101 ~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~------~~~~e~~-~~~~g~~~~~~~--~~~l~ 171 (200)
T 2bfw_A 101 TEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAV------GGLRDII-TNETGILVKAGD--PGELA 171 (200)
T ss_dssp CSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESC------HHHHHHC-CTTTCEEECTTC--HHHHH
T ss_pred eccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCC------CChHHHc-CCCceEEecCCC--HHHHH
Confidence 99997 6789999999999744 2 4689999999999999763 2345556 667788887654 57999
Q ss_pred HHHHHHHh-CC
Q 001939 341 PYLERAIS-LK 350 (993)
Q Consensus 341 ~~l~~ll~-~~ 350 (993)
++|.++++ ++
T Consensus 172 ~~i~~l~~~~~ 182 (200)
T 2bfw_A 172 NAILKALELSR 182 (200)
T ss_dssp HHHHHHHHCCH
T ss_pred HHHHHHHhcCH
Confidence 99999998 66
No 78
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.07 E-value=0.023 Score=63.47 Aligned_cols=247 Identities=14% Similarity=0.139 Sum_probs=121.4
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHC--CCeEEEEeCCCC-cccccccCCCce-EEeeeeccCCccccCccccChHHH
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHVVTGAPD-FVFTSEIQSPRL-FIRKVLLDCGAVQADALTVDRLAS 91 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~--Gh~V~~v~~~~~-~~~~~~i~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~ 91 (993)
.+||+ +...+.|-+.-+.++.++|+++ +.+|++++.... .++.. .|.+ ++.. .+....
T Consensus 9 ~~iLv-i~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l~~~---~p~vd~vi~--------------~~~~~~ 70 (349)
T 3tov_A 9 KRIVV-TFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQVMEY---NPNIDELIV--------------VDKKGR 70 (349)
T ss_dssp CEEEE-ECCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGGTSS---CTTCSEEEE--------------ECCSSH
T ss_pred CEEEE-EecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhc---CCCccEEEE--------------eCcccc
Confidence 44543 4567899999999999999988 789998876541 11111 1211 1111 010000
Q ss_pred HHHHHHHhhccHHHhHHHHHHHHhcCCC-cEEEECC-CchHHHHHHHcCCcEEE-EecCchhHHHHHHHhhc---ccchH
Q 001939 92 LEKYSETAVAPRKSILKDEVEWLNSIKA-DLVVSDV-VPVACRAAADAGIRSVC-VTNFSWDFIYAEYVMAA---GHHHR 165 (993)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~L~~~kP-DlVVsD~-~~~a~laA~~~gIP~V~-i~~~~~~~~~~~y~~~~---~~~~~ 165 (993)
...+.. +......|++.++ |+||.-+ ..-..+++...++|... .....+...|....+.. .+..+
T Consensus 71 ~~~~~~---------~~~l~~~Lr~~~y~D~vidl~~~~rs~~l~~~~~a~~riG~~~~~~~~~~~~~~~~~~~~~h~v~ 141 (349)
T 3tov_A 71 HNSISG---------LNEVAREINAKGKTDIVINLHPNERTSYLAWKIHAPITTGMSHFLFRPFMTKYTRLDRKTRHAAD 141 (349)
T ss_dssp HHHHHH---------HHHHHHHHHHHCCCCEEEECCCSHHHHHHHHHHCCSEEEECCCTTTGGGCSEECCCCTTTSCHHH
T ss_pred cccHHH---------HHHHHHHHhhCCCCeEEEECCCChHHHHHHHHhCCCeEEecCCCCccccccccccCCCCCccHHH
Confidence 001111 1233455778899 9999654 44556677788999543 33212111111111100 01111
Q ss_pred HHHHHHHhhccccceeeecCCCCCCCCC-CceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCCCCCh--h-----
Q 001939 166 SIVWQIAEDYSHCEFLIRLPGYCPMPAF-RDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGGQPAG--W----- 237 (993)
Q Consensus 166 ~i~~~l~~~y~~~d~ll~~p~~~~~p~~-~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~~~~~--~----- 237 (993)
... .+.+.. +.+. .+.. ..+ .++... ....+++....++++++++|.+.-|+.... +
T Consensus 142 r~~-~ll~~l-------g~~~---~~~~~~~l-~~~~~~---~~~~~~~l~~~g~~~~~~~i~i~pga~~~~k~wp~~~~ 206 (349)
T 3tov_A 142 MYI-NVLEQL-------GVTD---TSNSGLHI-EICEEW---RCQAQEFYSSHGLTDTDILIGFNIGSAVPEKRWPAERF 206 (349)
T ss_dssp HHH-HHHHHT-------TCCC---CCCCCCCC-CCCHHH---HHHHHHHHHHTTCCTTCCEEEEECCCSSGGGCCCHHHH
T ss_pred HHH-HHHHHh-------CCCc---cCCCceee-eCCHHH---HHHHHHHHHHcCCCCCCCEEEEeCCCCCccCCCCHHHH
Confidence 111 111111 1110 0000 000 011000 000112233456666788999988875431 2
Q ss_pred -hHHHhhCCCCcEEEEeCCCCCC---------CCCCeEE-CCCCC--CHHHHHhhcCEEEec-CChhHHHHHHHcCCcEE
Q 001939 238 -KLKEEYLPSGWKCLVCGASDSQ---------LPPNFIK-LPKDA--YTPDFMAASDCMLGK-IGYGTVSEALAYKLPFV 303 (993)
Q Consensus 238 -~ll~~l~~~~~~~vv~G~~~~~---------l~~nv~~-~~~~~--~~pdlL~~adl~It~-~G~~Tv~Eal~~GvP~l 303 (993)
++.+.+...++.++++|...+. ++.++.. .+..+ .+..+|+.||++|+. +|...+ |.++|+|+|
T Consensus 207 ~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~~~i~~DsG~~Hl--Aaa~g~P~v 284 (349)
T 3tov_A 207 AHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCNLLITNDSGPMHV--GISQGVPIV 284 (349)
T ss_dssp HHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCSEEEEESSHHHHH--HHTTTCCEE
T ss_pred HHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCCEEEECCCCHHHH--HHhcCCCEE
Confidence 2223333336777777754321 3444433 33322 234788899999997 554444 899999999
Q ss_pred EEe
Q 001939 304 FVR 306 (993)
Q Consensus 304 ~ip 306 (993)
++=
T Consensus 285 ~lf 287 (349)
T 3tov_A 285 ALY 287 (349)
T ss_dssp EEC
T ss_pred EEE
Confidence 984
No 79
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=97.07 E-value=0.00087 Score=65.81 Aligned_cols=117 Identities=9% Similarity=-0.070 Sum_probs=75.9
Q ss_pred cEEEEEcCCCCCh--h-hHHHhh--CC--CCcEEEEeCCCCCC---------CCCCeEECCCCC--CHHHHHhhcCEEEe
Q 001939 224 KLLILNFGGQPAG--W-KLKEEY--LP--SGWKCLVCGASDSQ---------LPPNFIKLPKDA--YTPDFMAASDCMLG 285 (993)
Q Consensus 224 ~~Vlvs~G~~~~~--~-~ll~~l--~~--~~~~~vv~G~~~~~---------l~~nv~~~~~~~--~~pdlL~~adl~It 285 (993)
++++++.|+.... . .+++.+ +. +++.++++|..... ++.++++ ++.+ +++++|+.||++|.
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~v~ 80 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGPDEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLYVH 80 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCSTTHHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEEEE
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCccHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEEEE
Confidence 5678888877653 2 233332 22 46788888876431 2447777 8874 46689999999997
Q ss_pred cC----ChhHHHHHHHcCC-cEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 286 KI----GYGTVSEALAYKL-PFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 286 ~~----G~~Tv~Eal~~Gv-P~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
.+ ...++.||+++|+ |+|+.......++ .+...+. .+... +++.+.++|.++++++
T Consensus 81 ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~-----~~~~~~~--~~~~~--~~~~l~~~i~~l~~~~ 141 (166)
T 3qhp_A 81 AANVESEAIACLEAISVGIVPVIANSPLSATRQ-----FALDERS--LFEPN--NAKDLSAKIDWWLENK 141 (166)
T ss_dssp CCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGG-----GCSSGGG--EECTT--CHHHHHHHHHHHHHCH
T ss_pred CCcccCccHHHHHHHhcCCCcEEeeCCCCchhh-----hccCCce--EEcCC--CHHHHHHHHHHHHhCH
Confidence 43 3468999999997 9999542222211 1222233 44444 3689999999999876
No 80
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=96.91 E-value=0.019 Score=63.61 Aligned_cols=254 Identities=10% Similarity=0.046 Sum_probs=123.2
Q ss_pred EEEEecCCCCcccHHHHHHHHHHHHHC--CCeEEEEeCCCCccccccc-CCCce-EEeeeeccCCccccCccccChHHHH
Q 001939 17 VFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHVVTGAPDFVFTSEI-QSPRL-FIRKVLLDCGAVQADALTVDRLASL 92 (993)
Q Consensus 17 ~Il~~v~g~G~GH~~ralaLA~aL~~~--Gh~V~~v~~~~~~~~~~~i-~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~ 92 (993)
+|++ +.+.+.|-+.-+.++.++|+++ +.++++++.... ...+ ..|.+ .+.. .+.....
T Consensus 2 kILi-i~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~~~---~~l~~~~p~i~~v~~--------------~~~~~~~ 63 (348)
T 1psw_A 2 KILV-IGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWC---RPLLSRMPEVNEAIP--------------MPLGHGA 63 (348)
T ss_dssp EEEE-ECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGGG---HHHHTTCTTEEEEEE--------------C------
T ss_pred eEEE-EeccccCHHHHHHHHHHHHHHHCCCCEEEEEECcch---hHHHhcCCccCEEEE--------------ecCCccc
Confidence 5554 4566789988899999999987 889999987531 1111 11221 1111 0000000
Q ss_pred HHHHHHhhccHHHhHHHHHHHHhcCCCcEEEECC-CchHHHHHHHcCCcE-EEEec-CchhHHHHHHHhhcccchHHHHH
Q 001939 93 EKYSETAVAPRKSILKDEVEWLNSIKADLVVSDV-VPVACRAAADAGIRS-VCVTN-FSWDFIYAEYVMAAGHHHRSIVW 169 (993)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~L~~~kPDlVVsD~-~~~a~laA~~~gIP~-V~i~~-~~~~~~~~~y~~~~~~~~~~i~~ 169 (993)
. .+ .......+.|++.+||+||.-+ ..-..+++...++|. +.+.. ..|.. +...............+
T Consensus 64 ~--------~~-~~~~~l~~~l~~~~~D~vid~~~~~~sa~~~~~~~~~~~ig~~~~~~~~~-~~~~~~~~~~~~~~~~~ 133 (348)
T 1psw_A 64 L--------EI-GERRKLGHSLREKRYDRAYVLPNSFKSALVPLFAGIPHRTGWRGEMRYGL-LNDVRVLDKEAWPLMVE 133 (348)
T ss_dssp ---------CH-HHHHHHHHHTTTTTCSEEEECSCCSGGGHHHHHTTCSEEEEECTTTCTTT-CTEEECCCTTTCCSHHH
T ss_pred c--------ch-HHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHhCCCEEeccCCCccccc-ccccccCCCCCCchHHH
Confidence 0 01 1123345667888999999433 344556677889997 34322 11110 00000000000000122
Q ss_pred HHHhhccccceeeecCCCCCCCCCCceeecCcccccCCcChHHHHHHhCCCCCCcEEEEEcCC-CCC-h-h------hHH
Q 001939 170 QIAEDYSHCEFLIRLPGYCPMPAFRDVIDVPLVVRRLHKSRKEVRKELGIEDDVKLLILNFGG-QPA-G-W------KLK 240 (993)
Q Consensus 170 ~l~~~y~~~d~ll~~p~~~~~p~~~~v~~vp~~~~~~~~~~~~~r~~l~~~~~~~~Vlvs~G~-~~~-~-~------~ll 240 (993)
+....... ++..... ..++.....|... .+....+++++.++++.++++|.+.-|+ ... . + ++.
T Consensus 134 ~~~~l~~~----~g~~~~~--~~~~~~~~~p~l~-~~~~~~~~~~~~~~~~~~~~~i~l~pga~~~~~k~wp~~~~~~l~ 206 (348)
T 1psw_A 134 RYIALAYD----KGIMRTA--QDLPQPLLWPQLQ-VSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELA 206 (348)
T ss_dssp HHHHTTSC----GGGCSSG--GGSCSSCCCCCCC-CCHHHHHHHHHHTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHH
T ss_pred HHHHHHhh----ccccccc--ccCCcccCCceee-cCHHHHHHHHHHhCCCCCCcEEEEECCCCccccCCCCHHHHHHHH
Confidence 21111100 0000000 0000000111110 0111234466677776577889898887 322 1 2 222
Q ss_pred HhhCCCCcEEEEeCCCCCC---------CC----CCeEE-CCCCC--CHHHHHhhcCEEEecCChhHHHHHHHcCCcEEE
Q 001939 241 EEYLPSGWKCLVCGASDSQ---------LP----PNFIK-LPKDA--YTPDFMAASDCMLGKIGYGTVSEALAYKLPFVF 304 (993)
Q Consensus 241 ~~l~~~~~~~vv~G~~~~~---------l~----~nv~~-~~~~~--~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ 304 (993)
+.+...++.++++|...+. ++ .++.. .+..+ .+..+|+.||++|+.-. +++..|.++|+|+|+
T Consensus 207 ~~L~~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~Ds-g~~HlAaa~g~P~v~ 285 (348)
T 1psw_A 207 KQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDS-GLMHVAAALNRPLVA 285 (348)
T ss_dssp HHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEESS-HHHHHHHHTTCCEEE
T ss_pred HHHHHCCCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHHHHhCCEEEecCC-HHHHHHHHcCCCEEE
Confidence 2333347777777764321 22 24543 34332 33478899999999733 455669999999999
Q ss_pred Ee
Q 001939 305 VR 306 (993)
Q Consensus 305 ip 306 (993)
+=
T Consensus 286 lf 287 (348)
T 1psw_A 286 LY 287 (348)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 81
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=96.21 E-value=0.012 Score=65.61 Aligned_cols=111 Identities=13% Similarity=-0.032 Sum_probs=77.0
Q ss_pred CcEEEEEcCCCCChhhHHHhhCCCCcEEEEeCCCCCC-CCCCeEECCCCC--CHHHHHhhcCEEEe-cCC----------
Q 001939 223 VKLLILNFGGQPAGWKLKEEYLPSGWKCLVCGASDSQ-LPPNFIKLPKDA--YTPDFMAASDCMLG-KIG---------- 288 (993)
Q Consensus 223 ~~~Vlvs~G~~~~~~~ll~~l~~~~~~~vv~G~~~~~-l~~nv~~~~~~~--~~pdlL~~adl~It-~~G---------- 288 (993)
.+.+++..|+.+. ..++..+ .+++.++++|.+... ++ ||++.|+.+ .+|.+|+.+|+-+. ..|
T Consensus 177 ~~~~i~yaG~l~k-~~~L~~l-~~~~~f~ivG~G~~~~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~ 253 (339)
T 3rhz_A 177 LKREIHFPGNPER-FSFVKEW-KYDIPLKVYTWQNVELPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYC 253 (339)
T ss_dssp EEEEEEECSCTTT-CGGGGGC-CCSSCEEEEESCCCCCCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCC
T ss_pred CCcEEEEeCCcch-hhHHHhC-CCCCeEEEEeCCcccCcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcC
Confidence 3457788888875 2344444 467888888887644 66 999999885 46788865554443 233
Q ss_pred hhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHH
Q 001939 289 YGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERA 346 (993)
Q Consensus 289 ~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~l 346 (993)
.+-+.|+|++|+|+|+.+.. .+++.+++.++|+.++. .+++...|.++
T Consensus 254 P~Kl~eymA~G~PVI~~~~~------~~~~~v~~~~~G~~~~~----~~e~~~~i~~l 301 (339)
T 3rhz_A 254 SYKLGSFLAAGIPVIVQEGI------ANQELIENNGLGWIVKD----VEEAIMKVKNV 301 (339)
T ss_dssp CHHHHHHHHHTCCEEEETTC------TTTHHHHHHTCEEEESS----HHHHHHHHHHC
T ss_pred hHHHHHHHHcCCCEEEccCh------hHHHHHHhCCeEEEeCC----HHHHHHHHHHh
Confidence 24689999999999987632 34667899999998862 35666666654
No 82
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=87.35 E-value=0.51 Score=55.99 Aligned_cols=86 Identities=10% Similarity=0.040 Sum_probs=56.7
Q ss_pred CCCCeEECCCCCCHH---HHHhhcCEEEec---CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEE-EEecC
Q 001939 260 LPPNFIKLPKDAYTP---DFMAASDCMLGK---IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGV-EMIRR 332 (993)
Q Consensus 260 l~~nv~~~~~~~~~p---dlL~~adl~It~---~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~-~l~~~ 332 (993)
+.+.+.+.+..+. . ..+..+|+|+-. +|.+|++|||++|||+|..+...+... .-+..+...|..- .+..
T Consensus 497 I~~Rv~F~g~~p~-~e~la~y~~aDIfLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asR-vgaSlL~~~GLpE~LIA~- 573 (631)
T 3q3e_A 497 LGDSATAHPHSPY-HQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEH-IDEGLFKRLGLPEWLIAN- 573 (631)
T ss_dssp HGGGEEEECCCCH-HHHHHHHHTCSEEECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHH-HHHHHHHHTTCCGGGEES-
T ss_pred CCccEEEcCCCCH-HHHHHHHhcCcEEEeCCcccCChHHHHHHHcCCCEEeccCCcHHHH-hHHHHHHhcCCCcceecC-
Confidence 3567888877653 3 455779999953 677999999999999999985433322 3346677888764 2322
Q ss_pred CCChhhHHHHHHHHHhCC
Q 001939 333 DLLTGHWKPYLERAISLK 350 (993)
Q Consensus 333 ~~~~~~l~~~l~~ll~~~ 350 (993)
+.+...+..-++.+++
T Consensus 574 --d~eeYv~~Av~La~D~ 589 (631)
T 3q3e_A 574 --TVDEYVERAVRLAENH 589 (631)
T ss_dssp --SHHHHHHHHHHHHHCH
T ss_pred --CHHHHHHHHHHHhCCH
Confidence 2344555555565555
No 83
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=86.08 E-value=3 Score=43.84 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=23.2
Q ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 001939 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (993)
Q Consensus 13 m~~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~ 53 (993)
|+|++| +..-|. |.-=..+|+++|++.| +|+++.+.
T Consensus 1 Mp~ILl---TNDDGi-~apGi~~L~~~l~~~g-~V~VvAP~ 36 (251)
T 2wqk_A 1 MPTFLL---VNDDGY-FSPGINALREALKSLG-RVVVVAPD 36 (251)
T ss_dssp -CEEEE---ECSSCT-TCHHHHHHHHHHTTTS-EEEEEEES
T ss_pred CCEEEE---EcCCCC-CcHHHHHHHHHHHhCC-CEEEEeeC
Confidence 666666 555553 3333558899999988 58877654
No 84
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=85.93 E-value=0.68 Score=55.45 Aligned_cols=70 Identities=13% Similarity=0.003 Sum_probs=45.7
Q ss_pred CHHHHHhhcCEEEecC----ChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHc-------CcEEEEec-CCCChhhH
Q 001939 272 YTPDFMAASDCMLGKI----GYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFY-------QGGVEMIR-RDLLTGHW 339 (993)
Q Consensus 272 ~~pdlL~~adl~It~~----G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~-------G~g~~l~~-~~~~~~~l 339 (993)
+++++|+.||+||..+ -..+++||+++|+|+|+....++.| .+... +.|+.+.. +..+++.+
T Consensus 511 d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~~d------~V~dg~~~~~~~~tG~lV~~rd~~d~ee~ 584 (725)
T 3nb0_A 511 DYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGS------YMEDLIETNQAKDYGIYIVDRRFKAPDES 584 (725)
T ss_dssp CHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHHHH------HHHTTSCHHHHHHTTEEEECCSSSCHHHH
T ss_pred HHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCChhh------hhhccccccCCCCceEEEeCCCCCCHHHH
Confidence 3578999999999754 3368999999999999987544332 23321 35666643 33344555
Q ss_pred HHHHHHHH
Q 001939 340 KPYLERAI 347 (993)
Q Consensus 340 ~~~l~~ll 347 (993)
.++|.+++
T Consensus 585 aeaLa~aL 592 (725)
T 3nb0_A 585 VEQLVDYM 592 (725)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 85
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=85.34 E-value=0.99 Score=52.43 Aligned_cols=77 Identities=17% Similarity=0.083 Sum_probs=56.0
Q ss_pred CeEE-CCCCC--CHHHHHhhcCEEEecC---Chh-HHHHHHHcCC-----cEEEEeCCCCCChHHHHHHHHHcCcEEEEe
Q 001939 263 NFIK-LPKDA--YTPDFMAASDCMLGKI---GYG-TVSEALAYKL-----PFVFVRRDYFNEEPFLRNMLEFYQGGVEMI 330 (993)
Q Consensus 263 nv~~-~~~~~--~~pdlL~~adl~It~~---G~~-Tv~Eal~~Gv-----P~l~ip~~~~~EQ~~na~~l~~~G~g~~l~ 330 (993)
++++ .++++ .++.+++.||+||..+ |+| ++.|||+||+ |+|+....+..++ + ..|+.++
T Consensus 332 ~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~------l---~~g~lv~ 402 (482)
T 1uqt_A 332 PLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANE------L---TSALIVN 402 (482)
T ss_dssp SEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGT------C---TTSEEEC
T ss_pred eEEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHH------h---CCeEEEC
Confidence 3554 45543 5678999999999754 554 7999999998 7777654444455 2 1477888
Q ss_pred cCCCChhhHHHHHHHHHhCC
Q 001939 331 RRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 331 ~~~~~~~~l~~~l~~ll~~~ 350 (993)
+.+ .+.+.++|.++++++
T Consensus 403 p~d--~~~lA~ai~~lL~~~ 420 (482)
T 1uqt_A 403 PYD--RDEVAAALDRALTMS 420 (482)
T ss_dssp TTC--HHHHHHHHHHHHTCC
T ss_pred CCC--HHHHHHHHHHHHcCC
Confidence 766 578999999999765
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=84.39 E-value=1.8 Score=53.01 Aligned_cols=113 Identities=14% Similarity=0.055 Sum_probs=68.0
Q ss_pred HHHhCCCCCCcEEEEEcCCCCCh-hhHHH---hhC--CCCcEEEEe-CCCCC-----------CC-CCCeEECCCCCCHH
Q 001939 214 RKELGIEDDVKLLILNFGGQPAG-WKLKE---EYL--PSGWKCLVC-GASDS-----------QL-PPNFIKLPKDAYTP 274 (993)
Q Consensus 214 r~~l~~~~~~~~Vlvs~G~~~~~-~~ll~---~l~--~~~~~~vv~-G~~~~-----------~l-~~nv~~~~~~~~~p 274 (993)
|..+|++ +..+||.+|-..-+- .+++. +.+ -++-++++. ..... .+ ++.+.+.+..+ ..
T Consensus 514 R~~~gLp-~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~-~~ 591 (723)
T 4gyw_A 514 RSQYGLP-EDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAP-KE 591 (723)
T ss_dssp GGGGTCC-TTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEECCC-HH
T ss_pred hhhcCCC-CCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECCCCC-HH
Confidence 5667886 556788887544331 22222 111 133333333 22111 02 45677776654 34
Q ss_pred HHH---hhcCEEEe---cCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEE
Q 001939 275 DFM---AASDCMLG---KIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEM 329 (993)
Q Consensus 275 dlL---~~adl~It---~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l 329 (993)
++| ..+|++.- .+|.+|++||+.+|||+|.++-..+.- ..-+..+...|+...+
T Consensus 592 ~~l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~s-R~~~s~l~~~gl~e~i 651 (723)
T 4gyw_A 592 EHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLAS-RVAASQLTCLGCLELI 651 (723)
T ss_dssp HHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGG-THHHHHHHHHTCGGGB
T ss_pred HHHHHhCCCeEEeCCCCcCCHHHHHHHHHcCCCEEEccCCCccH-hHHHHHHHHcCCcccc
Confidence 555 45999995 467799999999999999998544432 2456778888876433
No 87
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=80.74 E-value=2 Score=49.78 Aligned_cols=78 Identities=12% Similarity=-0.049 Sum_probs=57.9
Q ss_pred CeEECCCCC--CHHHHHhhcCEEEecC---Chh-HHHHHHHcC---CcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCC
Q 001939 263 NFIKLPKDA--YTPDFMAASDCMLGKI---GYG-TVSEALAYK---LPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRD 333 (993)
Q Consensus 263 nv~~~~~~~--~~pdlL~~adl~It~~---G~~-Tv~Eal~~G---vP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~ 333 (993)
.|+++++.+ .++.+++.||+|+..+ |+| +..|+++|| .|+|+....+..++ +. ..|+.+++.+
T Consensus 353 ~V~f~g~v~~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~------l~--~~allVnP~D 424 (496)
T 3t5t_A 353 TVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCGAAEV------LG--EYCRSVNPFD 424 (496)
T ss_dssp SEEEEECCCHHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHHH------HG--GGSEEECTTB
T ss_pred CEEEeCCCCHHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCCCHHH------hC--CCEEEECCCC
Confidence 577776653 3568889999999755 766 678999996 77777654444343 32 2478899877
Q ss_pred CChhhHHHHHHHHHhCC
Q 001939 334 LLTGHWKPYLERAISLK 350 (993)
Q Consensus 334 ~~~~~l~~~l~~ll~~~ 350 (993)
.+.+.++|.++|+++
T Consensus 425 --~~~lA~AI~~aL~m~ 439 (496)
T 3t5t_A 425 --LVEQAEAISAALAAG 439 (496)
T ss_dssp --HHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHcCC
Confidence 479999999999887
No 88
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=80.17 E-value=3.9 Score=44.30 Aligned_cols=120 Identities=15% Similarity=0.119 Sum_probs=68.0
Q ss_pred CCcEEEEEcCCCCCh--h------hHHHhhCCCCcEEEEe-CCCCCC--------CCCCeEECCCCC--CHHHHHhhcCE
Q 001939 222 DVKLLILNFGGQPAG--W------KLKEEYLPSGWKCLVC-GASDSQ--------LPPNFIKLPKDA--YTPDFMAASDC 282 (993)
Q Consensus 222 ~~~~Vlvs~G~~~~~--~------~ll~~l~~~~~~~vv~-G~~~~~--------l~~nv~~~~~~~--~~pdlL~~adl 282 (993)
++++|.+.-|+.... + ++.+.+...++.++++ |...+. .-+++.+.+..+ .+..+|+.||+
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~~~~~~~l~g~~sl~el~ali~~a~l 256 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKF 256 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHTTCTTEEECCCCCHHHHHHHHHTCSE
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHhhCCcccccCCCCHHHHHHHHHhCCE
Confidence 567888888775432 1 2333444456777775 532211 123565554332 23478889999
Q ss_pred EEec-CChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcC-cEEEEe-----cCCCChhhHHHHHHHHHhC
Q 001939 283 MLGK-IGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQ-GGVEMI-----RRDLLTGHWKPYLERAISL 349 (993)
Q Consensus 283 ~It~-~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G-~g~~l~-----~~~~~~~~l~~~l~~ll~~ 349 (993)
+||. +|...+ |.++|+|+|++=.+...+. .--.| -...+. .++++++++.++++++++.
T Consensus 257 ~I~~DSG~~Hl--Aaa~g~P~v~lfg~t~p~~------~~P~~~~~~~~~~~~~cm~~I~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 257 VVSVDTGLSHL--TAALDRPNITVYGPTDPGL------IGGYGKNQMVCRAPGNELSQLTANAVKQFIEENAEK 322 (326)
T ss_dssp EEEESSHHHHH--HHHTTCCEEEEESSSCHHH------HCCCSSSEEEEECGGGCGGGCCHHHHHHHHHHTTTT
T ss_pred EEecCCcHHHH--HHHcCCCEEEEECCCChhh------cCCCCCCceEecCCcccccCCCHHHHHHHHHHHHHH
Confidence 9998 664444 7779999999842211111 10011 112221 2467888888888888754
No 89
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=79.78 E-value=6.4 Score=48.04 Aligned_cols=154 Identities=13% Similarity=0.080 Sum_probs=86.1
Q ss_pred HHHHHHhCCCCCCcEEEEEc--CCCC--------C----hhhHHHhhCCCCcEEEEeCCC-----C--CCCCCCeEECCC
Q 001939 211 KEVRKELGIEDDVKLLILNF--GGQP--------A----GWKLKEEYLPSGWKCLVCGAS-----D--SQLPPNFIKLPK 269 (993)
Q Consensus 211 ~~~r~~l~~~~~~~~Vlvs~--G~~~--------~----~~~ll~~l~~~~~~~vv~G~~-----~--~~l~~nv~~~~~ 269 (993)
+++++.+++++++++||.+- .... . ..+.+.+.+..++.+++-... . ...++.+..+.-
T Consensus 526 ~~~~~~~~~~~~kk~ILyaPT~r~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~li~r~Hp~~~~~~~~~~~~~~~~~~~~ 605 (729)
T 3l7i_A 526 DEIRTHLNLPSDKKVIMYAPTWRDDEFVSKGKYLFELKIDLDNLYKELGDDYVILLRMHYLISNALDLSGYENFAIDVSN 605 (729)
T ss_dssp HHHHHHTTCCSSCEEEEECCCCCGGGCCGGGSSCCCCTTCHHHHHHHHTTTEEEEECCCHHHHTTCCCTTCTTTEEECTT
T ss_pred HHHHHHhCCCCCCeEEEEeeeeeCCccccccccccchhhHHHHHHHHcCCCeEEEEecCcchhccccccccCCcEEeCCC
Confidence 45778889888888777643 1110 0 012222333456665553210 0 112344443332
Q ss_pred CCCHHHHHhhcCEEEecCChhHHHHHHHcCCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCC-------CChhhHHHH
Q 001939 270 DAYTPDFMAASDCMLGKIGYGTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRD-------LLTGHWKPY 342 (993)
Q Consensus 270 ~~~~pdlL~~adl~It~~G~~Tv~Eal~~GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~-------~~~~~l~~~ 342 (993)
..++.++|..||++||--- +.+.|.+..++|+|+.... .|+.. .. --|...+..+ -+.++|.++
T Consensus 606 ~~di~~ll~~aD~lITDyS-Sv~fD~~~l~kPiif~~~D--~~~Y~-----~~-~rg~y~d~~~~~pg~~~~~~~eL~~~ 676 (729)
T 3l7i_A 606 YNDVSELFLISDCLITDYS-SVMFDYGILKRPQFFFAYD--IDKYD-----KG-LRGFYMNYMEDLPGPIYTEPYGLAKE 676 (729)
T ss_dssp CSCHHHHHHTCSEEEESSC-THHHHHGGGCCCEEEECTT--TTTTT-----SS-CCSBSSCTTSSSSSCEESSHHHHHHH
T ss_pred CcCHHHHHHHhCEEEeech-HHHHhHHhhCCCEEEecCC--HHHHh-----hc-cCCcccChhHhCCCCeECCHHHHHHH
Confidence 2467799999999999644 6788999999999999743 23211 10 0122233222 134566667
Q ss_pred HHHHHhCCCCc-------------cCCCCHHHHHHHHHHHHHcc
Q 001939 343 LERAISLKPCY-------------EGGINGGEVAAHILQETAIG 373 (993)
Q Consensus 343 l~~ll~~~~~~-------------~~~~~ga~~~a~~i~~~~~~ 373 (993)
|++.......+ -.....++++++.|.+...+
T Consensus 677 i~~~~~~~~~~~~~~~~~~~~~~~~~dg~as~ri~~~i~~~~~~ 720 (729)
T 3l7i_A 677 LKNLDKVQQQYQEKIDAFYDRFCSVDNGKASQYIGDLIHKDIKE 720 (729)
T ss_dssp HTTHHHHHHHTHHHHHHHHHHHSTTCCSCHHHHHHHHHHHHHHH
T ss_pred HhhhhccchhHHHHHHHHHHHhCCccCChHHHHHHHHHHhcCcC
Confidence 66654321111 14678888998888876543
No 90
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=69.84 E-value=20 Score=37.38 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=23.6
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~ 53 (993)
|+||. +..-|. |..=..+|+++|++.| +|+++.+.
T Consensus 2 M~ILl-TNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~ 36 (251)
T 2phj_A 2 PTFLL-VNDDGY-FSPGINALREALKSLG-RVVVVAPD 36 (251)
T ss_dssp CEEEE-ECSSCT-TCHHHHHHHHHHTTTS-EEEEEEES
T ss_pred CEEEE-ECCCCC-CCHHHHHHHHHHHhcC-CEEEEecC
Confidence 44532 445543 4444678999999988 99998665
No 91
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=67.56 E-value=16 Score=38.34 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=25.4
Q ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 001939 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (993)
Q Consensus 13 m~~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~ 53 (993)
+++|+||. +..-|. |..-..+|+++|++ +|+|+++.+.
T Consensus 9 ~~~m~ILl-TNDDGi-~apGi~aL~~~l~~-~~~V~VVAP~ 46 (261)
T 3ty2_A 9 TPKLRLLL-SNDDGV-YAKGLAILAKTLAD-LGEVDVVAPD 46 (261)
T ss_dssp --CCEEEE-ECSSCT-TCHHHHHHHHHHTT-TSEEEEEEES
T ss_pred CCCCeEEE-EcCCCC-CCHHHHHHHHHHHh-cCCEEEEecC
Confidence 34577753 455554 44446688999987 8999999765
No 92
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=65.36 E-value=24 Score=38.72 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=32.0
Q ss_pred EEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 001939 18 FAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPD 55 (993)
Q Consensus 18 Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~ 55 (993)
|+++..-.|.|=.+-+.++|..|.++|++|.++..++.
T Consensus 28 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 28 YIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp EEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 33456677799999999999999999999999987753
No 93
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=59.50 E-value=34 Score=37.01 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=31.8
Q ss_pred EEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 001939 18 FAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (993)
Q Consensus 18 Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~ 54 (993)
|+++..-.|.|=.+-+.++|.+|.++|++|.++...+
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3346667789999999999999999999999997765
No 94
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=53.04 E-value=57 Score=34.02 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=23.0
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~ 53 (993)
|+||. +..-|. |.-=..+|+++|++.| +|+++.+.
T Consensus 2 M~ILl-TNDDGi-~apGi~aL~~~L~~~g-~V~VVAP~ 36 (254)
T 2v4n_A 2 MRILL-SNDDGV-HAPGIQTLAKALREFA-DVQVVAPD 36 (254)
T ss_dssp CEEEE-ECSSCT-TCHHHHHHHHHHTTTS-EEEEEEES
T ss_pred CeEEE-EcCCCC-CCHHHHHHHHHHHhCC-cEEEEeeC
Confidence 45542 445543 4444668899998875 99998665
No 95
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=52.34 E-value=21 Score=35.55 Aligned_cols=50 Identities=14% Similarity=-0.017 Sum_probs=32.4
Q ss_pred HHhhcCEEEe-cCChhHHHHHH---------HcCCcEEEEeCCCCCChHHH-HHHHHHcCc
Q 001939 276 FMAASDCMLG-KIGYGTVSEAL---------AYKLPFVFVRRDYFNEEPFL-RNMLEFYQG 325 (993)
Q Consensus 276 lL~~adl~It-~~G~~Tv~Eal---------~~GvP~l~ip~~~~~EQ~~n-a~~l~~~G~ 325 (993)
++..+|+||. .||+||+-|.. .+++|++++....|.+.... .+.+.+.|+
T Consensus 105 m~~~sda~IalPGG~GTLdElfe~lt~~qlg~~~kPvvlln~~gfw~~l~~~l~~~~~~Gf 165 (189)
T 3sbx_A 105 MEDRANAFITLPGGVGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSELADTGY 165 (189)
T ss_dssp HHHHCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECTTCTTHHHHHHHHHHHHTTS
T ss_pred HHHHCCEEEEeCCCcchHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCC
Confidence 4457999997 56778877654 26999999986566654221 134555554
No 96
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=49.85 E-value=43 Score=37.11 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=30.5
Q ss_pred EEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 001939 17 VFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAPD 55 (993)
Q Consensus 17 ~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~~ 55 (993)
+|+++..-.|.|-.+-+..+|..|.++|.+|.++.. +.
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~ 40 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AE 40 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CC
Confidence 344455555699999999999999999999999876 53
No 97
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=49.08 E-value=18 Score=36.94 Aligned_cols=55 Identities=16% Similarity=0.071 Sum_probs=34.9
Q ss_pred CCHH---HH-HhhcCEEEe-cCChhHHHHHH---------HcCCcEEEEeCCCCCChHHH-HHHHHHcCc
Q 001939 271 AYTP---DF-MAASDCMLG-KIGYGTVSEAL---------AYKLPFVFVRRDYFNEEPFL-RNMLEFYQG 325 (993)
Q Consensus 271 ~~~p---dl-L~~adl~It-~~G~~Tv~Eal---------~~GvP~l~ip~~~~~EQ~~n-a~~l~~~G~ 325 (993)
++|+ .+ +..+|+||. .||+||+-|.. .+++|++++....|.+...+ .+.+.+.|+
T Consensus 93 ~~~~~Rk~~~~~~sda~I~lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~Gf 162 (216)
T 1ydh_A 93 ADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGF 162 (216)
T ss_dssp SSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHhCCEEEEeCCCccHHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCC
Confidence 4555 33 456999987 56778877665 47999999986555544222 144555554
No 98
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=48.73 E-value=42 Score=36.58 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=32.8
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~ 54 (993)
.+|+++..-.|.|=.+-+..+|..|.+.|++|.++...+
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 344456667789999999999999999999999997765
No 99
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=43.31 E-value=26 Score=35.19 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=27.2
Q ss_pred HHhhcCEEEe-cCChhHHHHH---HH------cCCcEEEEeCCCCCCh
Q 001939 276 FMAASDCMLG-KIGYGTVSEA---LA------YKLPFVFVRRDYFNEE 313 (993)
Q Consensus 276 lL~~adl~It-~~G~~Tv~Ea---l~------~GvP~l~ip~~~~~EQ 313 (993)
++..+|+||. .||+||+-|. +. +++|++++....|.+.
T Consensus 114 m~~~sda~IalPGG~GTldEl~e~lt~~qlg~~~kPvvlln~~gfw~~ 161 (199)
T 3qua_A 114 MEHRSDAFIALPGGIGTLEEFFEAWTAGYLGMHDKPLILLDPFGHYDG 161 (199)
T ss_dssp HHHHCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECTTSTTHH
T ss_pred HHHhcCccEEeCCCccHHHHHHHHHHHHHhccCCCCEEEEcCCccchH
Confidence 3456999997 4667786655 44 5999999986556543
No 100
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=41.87 E-value=1.3e+02 Score=31.22 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=23.5
Q ss_pred CCCcEEE-ECC--CchHHHHHHHcCCcEEEEec
Q 001939 117 IKADLVV-SDV--VPVACRAAADAGIRSVCVTN 146 (993)
Q Consensus 117 ~kPDlVV-sD~--~~~a~laA~~~gIP~V~i~~ 146 (993)
..||+|| .|. ...+..-|..+|||+|++.|
T Consensus 157 ~~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivD 189 (256)
T 2vqe_B 157 RLPDAIFVVDPTKEAIAVREARKLFIPVIALAD 189 (256)
T ss_dssp SCCSEEEESCTTTTHHHHHHHHHTTCCCEECCC
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEec
Confidence 3799988 465 55677788999999999843
No 101
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=37.98 E-value=67 Score=33.36 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=20.5
Q ss_pred cCCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 001939 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~ 53 (993)
+..-|. |.-=..+|+++|++.| +|+++.+.
T Consensus 6 TNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~ 35 (247)
T 1j9j_A 6 TNDDGI-QSKGIIVLAELLSEEH-EVFVVAPD 35 (247)
T ss_dssp ECSSCT-TCHHHHHHHHHHTTTS-EEEEEEES
T ss_pred EcCCCC-CcHhHHHHHHHHHhCC-CEEEEecC
Confidence 344442 3344668999999887 89988664
No 102
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=37.09 E-value=1.1e+02 Score=32.32 Aligned_cols=30 Identities=27% Similarity=0.374 Sum_probs=20.6
Q ss_pred cCCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 001939 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~ 53 (993)
+..-|. |.-=..+|+++|++.| +|+++.+.
T Consensus 6 TNDDGi-~ApGi~aL~~aL~~~g-~V~VVAP~ 35 (280)
T 1l5x_A 6 TNDDGV-HSPGLRLLYQFALSLG-DVDVVAPE 35 (280)
T ss_dssp ECSSCT-TCHHHHHHHHHHGGGS-EEEEEEES
T ss_pred EcCCCC-CcHhHHHHHHHHHhCC-CEEEEecC
Confidence 344442 3333668999999888 89988664
No 103
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=36.49 E-value=46 Score=33.10 Aligned_cols=54 Identities=17% Similarity=0.093 Sum_probs=33.5
Q ss_pred CCHH---HHH-hhcCEEEe-cCChhHHH---HHHH------cCCcEEEEeCCCCCChHHH-HHHHHHcC
Q 001939 271 AYTP---DFM-AASDCMLG-KIGYGTVS---EALA------YKLPFVFVRRDYFNEEPFL-RNMLEFYQ 324 (993)
Q Consensus 271 ~~~p---dlL-~~adl~It-~~G~~Tv~---Eal~------~GvP~l~ip~~~~~EQ~~n-a~~l~~~G 324 (993)
.+++ .+| ..+|+||. .||+||+- |++. +++|++++....|.+...+ .+.+.+.|
T Consensus 85 ~~~~~Rk~~~~~~sda~IvlPGG~GTl~El~e~lt~~q~g~~~kPvvll~~~g~~~~l~~~l~~~~~~G 153 (191)
T 1t35_A 85 NGMHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEG 153 (191)
T ss_dssp SHHHHHHHHHHHHCSEEEECSCCHHHHHHHHHHHHTTSCSSCCCCEEEECGGGTTHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEecCCcccchHHHHHHHHHHCC
Confidence 4555 344 56999997 55677754 6664 8999999986445543221 14455555
No 104
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=35.94 E-value=66 Score=32.51 Aligned_cols=40 Identities=15% Similarity=0.328 Sum_probs=23.6
Q ss_pred CCCCcEEEEEecCCCCcccHHHHHHHHHHHHHCC--CeEEE-EeCCC
Q 001939 11 ASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAG--HDVHV-VTGAP 54 (993)
Q Consensus 11 ~~m~~~~Il~~v~g~G~GH~~ralaLA~aL~~~G--h~V~~-v~~~~ 54 (993)
++|.+.+|.++++|. ||. +.+|.+++.+.+ ++|.. +|..+
T Consensus 3 ~~m~~~ri~vl~SG~--gsn--l~all~~~~~~~l~~~I~~Visn~~ 45 (209)
T 4ds3_A 3 GSMKRNRVVIFISGG--GSN--MEALIRAAQAPGFPAEIVAVFSDKA 45 (209)
T ss_dssp ---CCEEEEEEESSC--CHH--HHHHHHHHTSTTCSEEEEEEEESCT
T ss_pred CcCCCccEEEEEECC--cHH--HHHHHHHHHcCCCCcEEEEEEECCc
Confidence 458888887777765 554 556777776543 57764 45443
No 105
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=34.66 E-value=1.3e+02 Score=31.01 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=20.6
Q ss_pred cCCCCcccHHHHHHHHHHHHHCCCeEEEEeCC
Q 001939 22 VTGHGFGHATRVVEVVRNLISAGHDVHVVTGA 53 (993)
Q Consensus 22 v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~ 53 (993)
+..-|. |.-=..+|+++|++.| +|+++.+.
T Consensus 6 TNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~ 35 (244)
T 2e6c_A 6 TNDDGI-YSPGLWALAEAASQFG-EVFVAAPD 35 (244)
T ss_dssp ECSSCT-TCHHHHHHHHHHTTTS-EEEEEEEC
T ss_pred EcCCCC-CcHhHHHHHHHHHhCC-CEEEEecC
Confidence 344443 3334668999999887 89988664
No 106
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=34.46 E-value=85 Score=34.30 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=32.8
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHH--HCCCeEEEEeCCC
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLI--SAGHDVHVVTGAP 54 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~--~~Gh~V~~v~~~~ 54 (993)
.+|+++..-.|.|-.+-+..+|..|. +.|++|.++...+
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 35555666778999999999999999 8999999997765
No 107
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=33.90 E-value=44 Score=32.32 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=41.9
Q ss_pred HHHhhcCEEEecC---ChhHHHH---HHHcCCcEEEEeCCCCCChHHHHHHHHHcCc---EEEEecCCCChhhHHHHHHH
Q 001939 275 DFMAASDCMLGKI---GYGTVSE---ALAYKLPFVFVRRDYFNEEPFLRNMLEFYQG---GVEMIRRDLLTGHWKPYLER 345 (993)
Q Consensus 275 dlL~~adl~It~~---G~~Tv~E---al~~GvP~l~ip~~~~~EQ~~na~~l~~~G~---g~~l~~~~~~~~~l~~~l~~ 345 (993)
++|..||++|... ..||.+| |.+.|+|++++-.... +-..|.- +.-... -..+.. +.+++...|.+
T Consensus 73 ~~i~~aD~vva~~~~~d~Gt~~EiGyA~algKPVi~l~~~~~-~~~~n~M-~~g~~~~~~~~~~~y---~~~el~~~l~~ 147 (165)
T 2khz_A 73 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQS-GRVLSAM-IRGAADGSRFQVWDY---AEGEVETMLDR 147 (165)
T ss_dssp HHHHHCSEEEEECSSCCHHHHHHHHHHHHTCSSEEEEECTTT-TCCCCHH-HHHTCCSSSEEEEEC---CTTTHHHHHHH
T ss_pred HHHHhCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEcCCC-CCcchhh-hcccCccceeEEEec---CHHHHHHHHHH
Confidence 6788899998654 6789998 5778999999864321 1223333 332222 112333 33566677777
Q ss_pred HHh
Q 001939 346 AIS 348 (993)
Q Consensus 346 ll~ 348 (993)
.+.
T Consensus 148 ~~~ 150 (165)
T 2khz_A 148 YFE 150 (165)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 108
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=32.70 E-value=98 Score=31.68 Aligned_cols=35 Identities=11% Similarity=0.268 Sum_probs=23.0
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHC--CCeEE-EEeCCC
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISA--GHDVH-VVTGAP 54 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~--Gh~V~-~v~~~~ 54 (993)
++|+|+++|.| + -+.++.++|.+. +++|. |+|..+
T Consensus 23 ~rI~~l~SG~g--~--~~~~~l~~l~~~~~~~~I~~Vvt~~~ 60 (229)
T 3auf_A 23 IRIGVLISGSG--T--NLQAILDGCREGRIPGRVAVVISDRA 60 (229)
T ss_dssp EEEEEEESSCC--H--HHHHHHHHHHTTSSSEEEEEEEESST
T ss_pred cEEEEEEeCCc--H--HHHHHHHHHHhCCCCCeEEEEEcCCC
Confidence 57766766664 3 367888888876 57875 455533
No 109
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=32.13 E-value=49 Score=29.38 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=28.5
Q ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHC-CC-eEEEEeC
Q 001939 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISA-GH-DVHVVTG 52 (993)
Q Consensus 13 m~~~~Il~~v~g~G~GH~~ralaLA~aL~~~-Gh-~V~~v~~ 52 (993)
|+++.|++....+|.-....++.+|.++.+. || +|.++-.
T Consensus 1 M~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~ 42 (117)
T 1jx7_A 1 MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLM 42 (117)
T ss_dssp CCEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEE
Confidence 5555554433334667788899999999999 99 9976543
No 110
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=32.05 E-value=55 Score=30.09 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=26.4
Q ss_pred EEEEecCC--CCcccHHHHHHHHHHHHHCCCeE-EEEe
Q 001939 17 VFAYYVTG--HGFGHATRVVEVVRNLISAGHDV-HVVT 51 (993)
Q Consensus 17 ~Il~~v~g--~G~GH~~ralaLA~aL~~~Gh~V-~~v~ 51 (993)
++++.+++ +|.-....++.+|.++.+.||+| .++-
T Consensus 2 k~~iiv~~~p~~~~~~~~al~~a~a~~~~g~~v~~vff 39 (130)
T 2hy5_A 2 KFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVFF 39 (130)
T ss_dssp EEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCeeCEEEE
Confidence 44455555 55567888999999999999999 7653
No 111
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=31.96 E-value=46 Score=30.93 Aligned_cols=42 Identities=5% Similarity=-0.082 Sum_probs=29.1
Q ss_pred CCCCcEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeC
Q 001939 11 ASSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTG 52 (993)
Q Consensus 11 ~~m~~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~ 52 (993)
..|+++.|.+....++......++.+|....+.||+|.++-.
T Consensus 13 ~~~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~vFf~ 54 (134)
T 3mc3_A 13 EQXXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFM 54 (134)
T ss_dssp -CCCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cccceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 345566663332223677888999999999999999986643
No 112
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=31.20 E-value=50 Score=35.03 Aligned_cols=43 Identities=16% Similarity=0.117 Sum_probs=27.8
Q ss_pred CCCCCcEEEEEecCCCCcccHHHHH--HHHHHHHHCCCeEEEEeC
Q 001939 10 SASSKHLVFAYYVTGHGFGHATRVV--EVVRNLISAGHDVHVVTG 52 (993)
Q Consensus 10 ~~~m~~~~Il~~v~g~G~GH~~ral--aLA~aL~~~Gh~V~~v~~ 52 (993)
+-.|+.||||++..-+-....+.++ .+++.|++.||+|.++-.
T Consensus 17 ~~~m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DL 61 (280)
T 4gi5_A 17 NLYFQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDL 61 (280)
T ss_dssp -----CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred cchhhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 3458888888776544444455544 578899999999998843
No 113
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=29.75 E-value=94 Score=31.43 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=22.9
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCC--eEE-EEeCCC
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGH--DVH-VVTGAP 54 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh--~V~-~v~~~~ 54 (993)
++|+|+++|.| + -+.++.++|.+.+| +|. |+|..+
T Consensus 2 ~rI~vl~SG~g--~--~~~~~l~~l~~~~~~~~i~~Vvs~~~ 39 (216)
T 2ywr_A 2 LKIGVLVSGRG--S--NLQAIIDAIESGKVNASIELVISDNP 39 (216)
T ss_dssp EEEEEEECSCC--H--HHHHHHHHHHTTSSCEEEEEEEESCT
T ss_pred CEEEEEEeCCc--H--HHHHHHHHHHhCCCCCeEEEEEeCCC
Confidence 45655666654 3 47788899988887 665 455543
No 114
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=29.66 E-value=67 Score=29.08 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=28.7
Q ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEE
Q 001939 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVV 50 (993)
Q Consensus 13 m~~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v 50 (993)
|+++.|++..+.+|.-...-++.+|.++.+.+|+|.++
T Consensus 1 Mkk~~~vv~~~P~g~~~~~~al~~a~a~~a~~~~v~vf 38 (119)
T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVF 38 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHTTCSCEEEE
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67777755555555556678899999999999999765
No 115
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=29.47 E-value=51 Score=32.06 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=27.1
Q ss_pred HHHhhcCEEEe-----cCChhHHHH---HHHcCCcEEEEe
Q 001939 275 DFMAASDCMLG-----KIGYGTVSE---ALAYKLPFVFVR 306 (993)
Q Consensus 275 dlL~~adl~It-----~~G~~Tv~E---al~~GvP~l~ip 306 (993)
+.|..||++|. ....||.+| |.+.|+|++++.
T Consensus 77 ~~i~~aD~vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 77 TGISNATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCEEEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 56778999998 567889998 678999999996
No 116
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=29.24 E-value=92 Score=29.76 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=42.3
Q ss_pred HHHhhcCEEEec---CChhHHHH---HHHcCCcEEEEeCCCCCChHHHHHHHHHcC---cEEEEecCCCChhhHHHHHHH
Q 001939 275 DFMAASDCMLGK---IGYGTVSE---ALAYKLPFVFVRRDYFNEEPFLRNMLEFYQ---GGVEMIRRDLLTGHWKPYLER 345 (993)
Q Consensus 275 dlL~~adl~It~---~G~~Tv~E---al~~GvP~l~ip~~~~~EQ~~na~~l~~~G---~g~~l~~~~~~~~~l~~~l~~ 345 (993)
+.|..||++|.. ...||.+| |.+.|+|++++-.+.... ....++.-.. .-.+.+.++ +++...|++
T Consensus 64 ~~i~~aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l~~~~~~~--~ls~mi~G~~~~~~~~~~~Y~~---~el~~il~~ 138 (152)
T 4fyk_A 64 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGR--VLSAMIRGAADGSRFQVWDYAE---GEVETMLDR 138 (152)
T ss_dssp HHHHHCSEEEEECSSCCHHHHHHHHHHHHTTCCEEEEECGGGSC--CCCHHHHHHCCSSSEEEEECCT---TCHHHHHHH
T ss_pred HHHHHCCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEEeCCccc--hhHHHHcCCCCCCeEEEEEecH---HHHHHHHHH
Confidence 567889999974 56789888 588999999976432111 1122333222 222333333 677777777
Q ss_pred HHh
Q 001939 346 AIS 348 (993)
Q Consensus 346 ll~ 348 (993)
.+.
T Consensus 139 f~~ 141 (152)
T 4fyk_A 139 YFE 141 (152)
T ss_dssp HHC
T ss_pred HHH
Confidence 664
No 117
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=29.10 E-value=42 Score=32.92 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=28.6
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 001939 16 LVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (993)
Q Consensus 16 ~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~ 54 (993)
.+|++.++|. .....+..+.+.|+++|++|+++.+..
T Consensus 6 k~IllgvTGs--~aa~k~~~ll~~L~~~g~~V~vv~T~~ 42 (175)
T 3qjg_A 6 ENVLICLCGS--VNSINISHYIIELKSKFDEVNVIASTN 42 (175)
T ss_dssp CEEEEEECSS--GGGGGHHHHHHHHTTTCSEEEEEECTG
T ss_pred CEEEEEEeCH--HHHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 4666677654 566679999999999999999876553
No 118
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=28.29 E-value=87 Score=30.66 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=23.4
Q ss_pred HhhcCEEEe-cCChhH---HHHHHHcCCcEEEEeC
Q 001939 277 MAASDCMLG-KIGYGT---VSEALAYKLPFVFVRR 307 (993)
Q Consensus 277 L~~adl~It-~~G~~T---v~Eal~~GvP~l~ip~ 307 (993)
...+|+||. .+|.|| +.|++.+++|++++|.
T Consensus 105 ~~~sda~IvlpGg~GTL~E~~~al~~~kpV~~l~~ 139 (176)
T 2iz6_A 105 ALSSNVLVAVGMGPGTAAEVALALKAKKPVVLLGT 139 (176)
T ss_dssp GGGCSEEEEESCCHHHHHHHHHHHHTTCCEEEESC
T ss_pred HHhCCEEEEecCCccHHHHHHHHHHhCCcEEEEcC
Confidence 345999886 455665 5577789999999984
No 119
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=28.12 E-value=52 Score=34.63 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=39.8
Q ss_pred hcCEEEecCChhHHHHHHHc------CCcEEEEeCCCCCChHHHHHHHHHcCcEEEEecCCCChhhHHHHHHHHHhCC
Q 001939 279 ASDCMLGKIGYGTVSEALAY------KLPFVFVRRDYFNEEPFLRNMLEFYQGGVEMIRRDLLTGHWKPYLERAISLK 350 (993)
Q Consensus 279 ~adl~It~~G~~Tv~Eal~~------GvP~l~ip~~~~~EQ~~na~~l~~~G~g~~l~~~~~~~~~l~~~l~~ll~~~ 350 (993)
.+|++|+-||=||+.+++.. ++|++.||.. ..|.- .++.++.+.++++++++..
T Consensus 35 ~~D~vv~lGGDGT~l~aa~~~~~~~~~~PilGIn~G-------------~lgfl-----~~~~~~~~~~~l~~l~~g~ 94 (272)
T 2i2c_A 35 EPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTG-------------HLGFY-----ADWRPAEADKLVKLLAKGE 94 (272)
T ss_dssp SCSEEEEEESHHHHHHHHHHTGGGTTTCEEEEEESS-------------SCCSS-----CCBCGGGHHHHHHHHHTTC
T ss_pred CCCEEEEEcCcHHHHHHHHHHhhcCCCCCEEEEeCC-------------CCCcC-----CcCCHHHHHHHHHHHHcCC
Confidence 47999999999999998875 8999999831 12221 2334677888998887553
No 120
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=27.97 E-value=65 Score=32.70 Aligned_cols=43 Identities=28% Similarity=0.348 Sum_probs=29.5
Q ss_pred CCHH---HHH-hhcCEEEe-cCChhHHHHHH---H------cCCcEEEEeCCCCCCh
Q 001939 271 AYTP---DFM-AASDCMLG-KIGYGTVSEAL---A------YKLPFVFVRRDYFNEE 313 (993)
Q Consensus 271 ~~~p---dlL-~~adl~It-~~G~~Tv~Eal---~------~GvP~l~ip~~~~~EQ 313 (993)
.+|+ .+| ..+|+||. .||+||+-|.. . +++|++++....|.+.
T Consensus 97 ~~f~~Rk~~~~~~sda~VvlpGG~GTLdElfE~lt~~qlg~~~kPvvll~~~g~w~~ 153 (215)
T 2a33_A 97 ADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNS 153 (215)
T ss_dssp SSHHHHHHHHHHTCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECGGGTTHH
T ss_pred CCHHHHHHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhCCCCCCeEEecCcchhHH
Confidence 4566 344 46999986 56778876655 3 3899999986555543
No 121
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=26.65 E-value=65 Score=32.33 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=30.0
Q ss_pred CcEEEEEecCCCCcccHH-HHHHHHHHHHHCCCeEEEEeCCC
Q 001939 14 KHLVFAYYVTGHGFGHAT-RVVEVVRNLISAGHDVHVVTGAP 54 (993)
Q Consensus 14 ~~~~Il~~v~g~G~GH~~-ralaLA~aL~~~Gh~V~~v~~~~ 54 (993)
+..+|++.++|. +... .+..+.+.|+++|++|+++.+..
T Consensus 6 ~~k~I~lgiTGs--~aa~~k~~~ll~~L~~~g~eV~vv~T~~ 45 (201)
T 3lqk_A 6 AGKHVGFGLTGS--HCTYHEVLPQMERLVELGAKVTPFVTHT 45 (201)
T ss_dssp TTCEEEEECCSC--GGGGGGTHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCEEEEEEECh--HHHHHHHHHHHHHHhhCCCEEEEEEChh
Confidence 345666677764 6666 89999999999999999886543
No 122
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=26.49 E-value=68 Score=29.94 Aligned_cols=40 Identities=23% Similarity=0.087 Sum_probs=28.7
Q ss_pred CCCcEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEe
Q 001939 12 SSKHLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVT 51 (993)
Q Consensus 12 ~m~~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~ 51 (993)
.|+++.|++..+.+|.-....++.+|.++.+.||+|.++-
T Consensus 4 ~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~~~~v~Vff 43 (136)
T 2hy5_B 4 VVKKFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLF 43 (136)
T ss_dssp -CCEEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEE
T ss_pred chhEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3666666554444555577778999999999999997653
No 123
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=24.16 E-value=73 Score=30.79 Aligned_cols=33 Identities=33% Similarity=0.387 Sum_probs=26.5
Q ss_pred HHHhhcCEEEec-----CChhHHHH---HHHcCCcEEEEeC
Q 001939 275 DFMAASDCMLGK-----IGYGTVSE---ALAYKLPFVFVRR 307 (993)
Q Consensus 275 dlL~~adl~It~-----~G~~Tv~E---al~~GvP~l~ip~ 307 (993)
+.|..||++|.. ...||.+| |.+.|+|++++-.
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~ 105 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYT 105 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEc
Confidence 567789999983 24789998 5889999999863
No 124
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=23.95 E-value=83 Score=31.75 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHC--CCeEEE-EeCC
Q 001939 13 SKHLVFAYYVTGHGFGHATRVVEVVRNLISA--GHDVHV-VTGA 53 (993)
Q Consensus 13 m~~~~Il~~v~g~G~GH~~ralaLA~aL~~~--Gh~V~~-v~~~ 53 (993)
|+++.| +++|. |+. +.++.++|.+. +++|.. +|..
T Consensus 3 m~ki~v--l~sG~--g~~--~~~~l~~l~~~~l~~~I~~Vit~~ 40 (212)
T 3av3_A 3 MKRLAV--FASGS--GTN--FQAIVDAAKRGDLPARVALLVCDR 40 (212)
T ss_dssp CEEEEE--ECCSS--CHH--HHHHHHHHHTTCCCEEEEEEEESS
T ss_pred CcEEEE--EEECC--cHH--HHHHHHHHHhCCCCCeEEEEEeCC
Confidence 655555 44444 553 66788888877 688864 4543
No 125
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=23.10 E-value=2.3e+02 Score=32.16 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=25.6
Q ss_pred HHHHhcCCCcEEEECCCchHHHHHHHcCCcEEEE
Q 001939 111 VEWLNSIKADLVVSDVVPVACRAAADAGIRSVCV 144 (993)
Q Consensus 111 ~~~L~~~kPDlVVsD~~~~a~laA~~~gIP~V~i 144 (993)
.+++++.+||++|++.. ...+|+++|||++.+
T Consensus 368 e~~i~~~~pDllig~~~--~~~~a~k~gip~~~~ 399 (458)
T 3pdi_B 368 EHAARAGQAQLVIGNSH--ALASARRLGVPLLRA 399 (458)
T ss_dssp HHHHHHHTCSEEEECTT--HHHHHHHTTCCEEEC
T ss_pred HHHHHhcCCCEEEEChh--HHHHHHHcCCCEEEe
Confidence 45678889999999865 345788999999976
No 126
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=22.69 E-value=72 Score=30.80 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=26.6
Q ss_pred HHHhhcCEEEec--------CChhHHHH---HHHcCCcEEEEeC
Q 001939 275 DFMAASDCMLGK--------IGYGTVSE---ALAYKLPFVFVRR 307 (993)
Q Consensus 275 dlL~~adl~It~--------~G~~Tv~E---al~~GvP~l~ip~ 307 (993)
+.|..||++|.. .-.||.+| |.+.|+|++++..
T Consensus 63 ~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~~ 106 (161)
T 2f62_A 63 QMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFTS 106 (161)
T ss_dssp HHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 577889999975 34679998 5789999999863
No 127
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=22.60 E-value=1.2e+02 Score=30.89 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=32.6
Q ss_pred cEEEEEecCCCCcccHHHHHHHHHHHHHCCCeEEEEeCCC
Q 001939 15 HLVFAYYVTGHGFGHATRVVEVVRNLISAGHDVHVVTGAP 54 (993)
Q Consensus 15 ~~~Il~~v~g~G~GH~~ralaLA~aL~~~Gh~V~~v~~~~ 54 (993)
+++| |+....|.|=.+-++.+|.+|.++|++|.++...+
T Consensus 6 ~l~I-~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKV-FLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CEEE-EEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEE-EEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 5666 45577889999999999999999999998876654
No 128
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=22.55 E-value=45 Score=33.33 Aligned_cols=40 Identities=18% Similarity=0.087 Sum_probs=28.2
Q ss_pred CHH---HHH-hhcCEEEec-CChhH---HHHHHHcCCcEEEEeCCCCC
Q 001939 272 YTP---DFM-AASDCMLGK-IGYGT---VSEALAYKLPFVFVRRDYFN 311 (993)
Q Consensus 272 ~~p---dlL-~~adl~It~-~G~~T---v~Eal~~GvP~l~ip~~~~~ 311 (993)
+++ .+| ..+|+||.- ||.|| +.|++.+++|+++++...+.
T Consensus 107 ~f~~Rk~~m~~~sda~IvlpGG~GTL~E~~eal~~~kPV~lln~~g~w 154 (195)
T 1rcu_A 107 DFQMRSFVLLRNADVVVSIGGEIGTAIEILGAYALGKPVILLRGTGGW 154 (195)
T ss_dssp CHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHHTTCCEEEETTSCHH
T ss_pred CHHHHHHHHHHhCCEEEEecCCCcHHHHHHHHHhcCCCEEEECCCCcc
Confidence 465 344 469999874 55665 45788899999999754443
No 129
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=22.38 E-value=59 Score=29.72 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCcEEEECCC-c--hHHHHH---HHcCCcEEEEec
Q 001939 108 KDEVEWLNSIKADLVVSDVV-P--VACRAA---ADAGIRSVCVTN 146 (993)
Q Consensus 108 ~~~~~~L~~~kPDlVVsD~~-~--~a~laA---~~~gIP~V~i~~ 146 (993)
.++.+++++.+||+|+.|.. | -|.-++ +..++|+|.+|-
T Consensus 43 ~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lTa 87 (123)
T 2lpm_A 43 QEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFATG 87 (123)
T ss_dssp HHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBCT
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEec
Confidence 44567788899999999972 2 122222 335789776654
No 130
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=21.29 E-value=2.5e+02 Score=28.30 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=13.7
Q ss_pred HHHHHhcCCCcEEEECC
Q 001939 110 EVEWLNSIKADLVVSDV 126 (993)
Q Consensus 110 ~~~~L~~~kPDlVVsD~ 126 (993)
..+.|++++||+||+-.
T Consensus 75 ~~~~l~~~~~Dliv~ag 91 (215)
T 3tqr_A 75 LQKTIDHYDPKLIVLAG 91 (215)
T ss_dssp HHHHHHTTCCSEEEESS
T ss_pred HHHHHHhcCCCEEEEcc
Confidence 36778999999999753
No 131
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=20.70 E-value=83 Score=30.19 Aligned_cols=33 Identities=27% Similarity=0.218 Sum_probs=26.7
Q ss_pred HHHhhcCEEEec-----CChhHHHH---HHHcCCcEEEEeC
Q 001939 275 DFMAASDCMLGK-----IGYGTVSE---ALAYKLPFVFVRR 307 (993)
Q Consensus 275 dlL~~adl~It~-----~G~~Tv~E---al~~GvP~l~ip~ 307 (993)
+.|..||++|.- .-.||.+| |.+.|+|++++-.
T Consensus 74 ~~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A~gkPVv~~~~ 114 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVIP 114 (157)
T ss_dssp HHHHTSSEEEEECCGGGCCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHhCCEEEEEcCCCCCCccHHHHHHHHHHCCCeEEEEEc
Confidence 567789999865 35789998 6889999999863
Done!