BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001941
(993 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|190148357|gb|ACE63261.1| histidine kinase 3 [Betula pendula]
Length = 1053
Score = 1538 bits (3983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 757/955 (79%), Positives = 823/955 (86%), Gaps = 8/955 (0%)
Query: 1 MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERI 60
MSLL+V GFGLKVGHLLWMLC WIVSVISMN F+N D+KT L + KMWL CWE+I
Sbjct: 1 MSLLNVVGFGLKVGHLLWMLCYWIVSVISMNWFINSGIMDSKTGLLSDSSKMWLRCWEKI 60
Query: 61 SGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALG 120
SGNS I H Y Q GSKRV + WWRK+LITW+ WT+VSLWIFWY+SSQATEKR+E+L
Sbjct: 61 SGNSCKIQHHYSQYFGSKRVPKEWWRKLLITWVFGWTIVSLWIFWYLSSQATEKRKESLA 120
Query: 121 SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTS 180
SMCDERARMLQDQFNVSMNH+QAMSI+IS FHHGKNPSAIDQ TF RYTERTAFERPLTS
Sbjct: 121 SMCDERARMLQDQFNVSMNHIQAMSIMISIFHHGKNPSAIDQRTFARYTERTAFERPLTS 180
Query: 181 GVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFA 233
GVAYAVRVL SERE+FEKQQGWTIKRMDT E NPVH+D EPSPI+EEYAPVIFA
Sbjct: 181 GVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHEDDYAPEALEPSPIQEEYAPVIFA 240
Query: 234 QDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPS 293
QDT+SHV+SLDMLSGKEDRENVL AR SGKGVLTAPF+LLKTNRLGVILTFAVYK +LPS
Sbjct: 241 QDTISHVVSLDMLSGKEDRENVLLARESGKGVLTAPFKLLKTNRLGVILTFAVYKTDLPS 300
Query: 294 NATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVS 353
NATPNERI+ATDGYLGG+FDIESLVEKLL QLASKQTI VNVYD TN SHPISMYGSNVS
Sbjct: 301 NATPNERIQATDGYLGGVFDIESLVEKLLQQLASKQTILVNVYDTTNHSHPISMYGSNVS 360
Query: 354 DDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRI 413
DDGL S LNFGDPFRKHEM CRFKQK PWP LAI+TSIGILVIA LVG+IF ATVNRI
Sbjct: 361 DDGLQHGSALNFGDPFRKHEMHCRFKQKPPWPWLAITTSIGILVIALLVGYIFHATVNRI 420
Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
AKVE+D M ELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT+LDVTQQD
Sbjct: 421 AKVEDDCQKMTELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTDLDVTQQD 480
Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
YVRTAQ SGKALVSLINEVLDQAK+ESG+LELEAV F+LRAILDDVLSLFSGKS GVE
Sbjct: 481 YVRTAQDSGKALVSLINEVLDQAKIESGRLELEAVQFDLRAILDDVLSLFSGKSPGNGVE 540
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
LAVYISD+VPE LIGD GRFRQIITNLMGNSIKFTEKGHIFVTV+LVEEV+ SIEVETE
Sbjct: 541 LAVYISDQVPEMLIGDAGRFRQIITNLMGNSIKFTEKGHIFVTVHLVEEVIGSIEVETE- 599
Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
SSS NTLSG+PVADR SW GF+TF+Q+GST P SSS+DLINLIVSVEDTG GIP EAQ
Sbjct: 600 SSSNNTLSGFPVADRKSSWDGFRTFSQEGSTCPLSSSSSDLINLIVSVEDTGVGIPREAQ 659
Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
SR+FTPFMQVGPSISRTHGGTGIGLSISK LVG MKGEIGFVSIPN GSTFTFTAVF N
Sbjct: 660 SRVFTPFMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSIPNTGSTFTFTAVFTNA 719
Query: 714 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
SS NE+ S Q+NNQ S SSEFQGM ALVVDPRP+RAKVSRYHIQRLGI+VE+V D Q
Sbjct: 720 SSHPNEYKSLQINNQSKSTSSEFQGMTALVVDPRPVRAKVSRYHIQRLGIRVELVPDLNQ 779
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ I+SG+ I+M+LVEQEVW++D+ ++ LF+N +K KLFLLAN I SS+
Sbjct: 780 GFANISSGNTAIDMVLVEQEVWDRDSGIAVLFINKFKKSYSRIPPKLFLLANPIGSSKTR 839
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
+T P VIMKPLR+SML+ASLQRAMGVGNKGN RN ELP SLR+LLLGRKILIVD
Sbjct: 840 AATSDDYTPPVIMKPLRASMLSASLQRAMGVGNKGNPRNGELPGSSLRNLLLGRKILIVD 899
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
DNNVNL+VAA LK+YGA VVC E GKKA LL PPH FDACFMDIQMPE+DG+E
Sbjct: 900 DNNVNLRVAAGALKKYGADVVCAESGKKAISLLKPPHHFDACFMDIQMPEIDGFE 954
>gi|190148361|gb|ACE63263.1| histidine kinase 3B [Populus trichocarpa]
Length = 1019
Score = 1533 bits (3970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 750/957 (78%), Positives = 837/957 (87%), Gaps = 12/957 (1%)
Query: 1 MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERI 60
MSLLHVFGFGLKVGHLLWMLCCWIVSVISMN F+N +TK L G+ KMWL C E++
Sbjct: 1 MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNWFINGGILETKAGLLGDGGKMWLKCLEKV 60
Query: 61 SGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALG 120
SGNS IHHLYYQ IGSKR+R+TWWRK+L+ W++ W VS+WIFWYMSSQA EKR+E L
Sbjct: 61 SGNSCKIHHLYYQYIGSKRIRKTWWRKLLVAWIVGWITVSVWIFWYMSSQAFEKRKETLA 120
Query: 121 SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTS 180
SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQ TF RYTERTAFERPLTS
Sbjct: 121 SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTS 180
Query: 181 GVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFA 233
GVAYAVRV+ SERE+FE QQGWTIKRMDTFE +PV KD EPSPI+EEYAPVIFA
Sbjct: 181 GVAYAVRVMHSEREQFENQQGWTIKRMDTFEQSPVQKDDNVAKALEPSPIQEEYAPVIFA 240
Query: 234 QDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPS 293
QDTV+HV+SLDMLSG EDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYK +LPS
Sbjct: 241 QDTVAHVVSLDMLSGTEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKTDLPS 300
Query: 294 NATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVS 353
NA PNERI+ATDGYLGGIFDIESLVEKLL QLASKQTI VNVYDITN SHPISMYGSNVS
Sbjct: 301 NAMPNERIQATDGYLGGIFDIESLVEKLLQQLASKQTILVNVYDITNQSHPISMYGSNVS 360
Query: 354 DDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRI 413
DDGL VS LNFGDPFRKHEMRCRFKQK PWP LAI+TSIGILVIA L+G+IF AT+NRI
Sbjct: 361 DDGLEHVSALNFGDPFRKHEMRCRFKQKPPWPWLAITTSIGILVIALLIGYIFHATMNRI 420
Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
AKVE+DY+ MMELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD TQQD
Sbjct: 421 AKVEDDYNEMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTELDATQQD 480
Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
YVRTAQ SGKALVSLINEVLDQAK+ESGK+ELEA+ F+LRAI+D+VL+LFSGK+ +KGVE
Sbjct: 481 YVRTAQDSGKALVSLINEVLDQAKIESGKIELEAMQFDLRAIMDEVLALFSGKAHEKGVE 540
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
LAVY+SD VPE LIGDPGRFRQIITNLMGNSIKFT+KGHIF+TV+LVEEV+DSI+VETE
Sbjct: 541 LAVYVSDGVPEILIGDPGRFRQIITNLMGNSIKFTKKGHIFLTVHLVEEVMDSIDVETE- 599
Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
SSS+NTLSG PVADRC SW GFKTFN +GS+ SS+DLINLIVSVEDTG+GIPLEAQ
Sbjct: 600 SSSRNTLSGLPVADRCRSWVGFKTFNPEGSSHTLSPSSSDLINLIVSVEDTGEGIPLEAQ 659
Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
R+FTPFMQV PSISR +GGTGIGLSISK LVG M G+IGFVSIP+IGSTFTFTAVF NG
Sbjct: 660 PRVFTPFMQVDPSISRKYGGTGIGLSISKCLVGLMNGDIGFVSIPDIGSTFTFTAVFSNG 719
Query: 714 SSTSNEH--NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 771
S SN+ Q++ Q N++SS+FQGM ALVVDP+P+RAKVSRY IQRLGI VE+V D
Sbjct: 720 CSNSNDSKLQKQRLKTQTNTMSSKFQGMTALVVDPKPVRAKVSRYQIQRLGIHVELVLDL 779
Query: 772 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
Q LS I++ +K++NM+ +EQEVW+KD+S+S LFVN L+K+ G +KLFLL NS+ SSR
Sbjct: 780 NQGLSSISNENKVVNMVFIEQEVWDKDSSISALFVNKLQKIVSGVSTKLFLLGNSL-SSR 838
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILI 891
NT+T GV PSVI KPL++SMLAASLQRAMG GNKGN N E PS+SLR LL+GRK+LI
Sbjct: 839 TNTATSGVYTPSVITKPLKASMLAASLQRAMG-GNKGNPCNGEHPSLSLRKLLVGRKMLI 897
Query: 892 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VDDN VNL VAAA LK+YGA VVC + G+KA +LL PPH+FDACFMDIQMPEMDG+E
Sbjct: 898 VDDNKVNLMVAAAALKKYGADVVCADSGQKAIKLLKPPHKFDACFMDIQMPEMDGFE 954
>gi|224075549|ref|XP_002304678.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222842110|gb|EEE79657.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1029
Score = 1526 bits (3950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 750/967 (77%), Positives = 837/967 (86%), Gaps = 22/967 (2%)
Query: 1 MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERI 60
MSLLHVFGFGLKVGHLLWMLCCWIVSVISMN F+N +TK L G+ KMWL C E++
Sbjct: 1 MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNWFINGGILETKAGLLGDGGKMWLKCLEKV 60
Query: 61 SGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALG 120
SGNS IHHLYYQ IGSKR+R+TWWRK+L+ W++ W VS+WIFWYMSSQA EKR+E L
Sbjct: 61 SGNSCKIHHLYYQYIGSKRIRKTWWRKLLVAWIVGWITVSVWIFWYMSSQAFEKRKETLA 120
Query: 121 SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTS 180
SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQ TF RYTERTAFERPLTS
Sbjct: 121 SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTS 180
Query: 181 GVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFA 233
GVAYAVRV+ SERE+FE QQGWTIKRMDTFE +PV KD EPSPI+EEYAPVIFA
Sbjct: 181 GVAYAVRVMHSEREQFENQQGWTIKRMDTFEQSPVQKDDNVAKALEPSPIQEEYAPVIFA 240
Query: 234 QDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPS 293
QDTV+HV+SLDMLSG EDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYK +LPS
Sbjct: 241 QDTVAHVVSLDMLSGTEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKTDLPS 300
Query: 294 NATPNERIEATDG----------YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSH 343
NA PNERI+ATDG YLGGIFDIESLVEKLL QLASKQTI VNVYDITN SH
Sbjct: 301 NAMPNERIQATDGSSDLLMTPIRYLGGIFDIESLVEKLLQQLASKQTILVNVYDITNQSH 360
Query: 344 PISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVG 403
PISMYGSNVSDDGL VS LNFGDPFRKHEMRCRFKQK PWP LAI+TSIGILVIA L+G
Sbjct: 361 PISMYGSNVSDDGLEHVSALNFGDPFRKHEMRCRFKQKPPWPWLAITTSIGILVIALLIG 420
Query: 404 HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM 463
+IF AT+NRIAKVE+DY+ MMELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGML MLM
Sbjct: 421 YIFHATMNRIAKVEDDYNEMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLM 480
Query: 464 DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 523
DTELD TQQDYVRTAQ SGKALVSLINEVLDQAK+ESGK+ELEA+ F+LRAI+D+VL+LF
Sbjct: 481 DTELDATQQDYVRTAQDSGKALVSLINEVLDQAKIESGKIELEAMQFDLRAIMDEVLALF 540
Query: 524 SGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 583
SGK+ +KGVELAVY+SD VPE LIGDPGRFRQIITNLMGNSIKFT+KGHIF+TV+LVEEV
Sbjct: 541 SGKAHEKGVELAVYVSDGVPEILIGDPGRFRQIITNLMGNSIKFTKKGHIFLTVHLVEEV 600
Query: 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 643
+DSI+VETE SSS+NTLSG PVADRC SW GFKTFN +GS+ SS+DLINLIVSVED
Sbjct: 601 MDSIDVETE-SSSRNTLSGLPVADRCRSWVGFKTFNPEGSSHTLSPSSSDLINLIVSVED 659
Query: 644 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 703
TG+GIPLEAQ R+FTPFMQV PSISR +GGTGIGLSISK LVG M G+IGFVSIP+IGST
Sbjct: 660 TGEGIPLEAQPRVFTPFMQVDPSISRKYGGTGIGLSISKCLVGLMNGDIGFVSIPDIGST 719
Query: 704 FTFTAVFGNGSSTSNEH--NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL 761
FTFTAVF NG S SN+ Q++ Q N++SS+FQGM ALVVDP+P+RAKVSRY IQRL
Sbjct: 720 FTFTAVFSNGCSNSNDSKLQKQRLKTQTNTMSSKFQGMTALVVDPKPVRAKVSRYQIQRL 779
Query: 762 GIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLF 821
GI VE+V D Q LS I++ +K++NM+ +EQEVW+KD+S+S LFVN L+K+ G +KLF
Sbjct: 780 GIHVELVLDLNQGLSSISNENKVVNMVFIEQEVWDKDSSISALFVNKLQKIVSGVSTKLF 839
Query: 822 LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR 881
LL NS+ SSR NT+T GV PSVI KPL++SMLAASLQRAMG GNKGN N E PS+SLR
Sbjct: 840 LLGNSL-SSRTNTATSGVYTPSVITKPLKASMLAASLQRAMG-GNKGNPCNGEHPSLSLR 897
Query: 882 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 941
LL+GRK+LIVDDN VNL VAAA LK+YGA VVC + G+KA +LL PPH+FDACFMDIQM
Sbjct: 898 KLLVGRKMLIVDDNKVNLMVAAAALKKYGADVVCADSGQKAIKLLKPPHKFDACFMDIQM 957
Query: 942 PEMDGYE 948
PEMDG+E
Sbjct: 958 PEMDGFE 964
>gi|225425392|ref|XP_002276961.1| PREDICTED: histidine kinase 3 [Vitis vinifera]
gi|297738469|emb|CBI27670.3| unnamed protein product [Vitis vinifera]
Length = 1039
Score = 1511 bits (3912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 748/955 (78%), Positives = 822/955 (86%), Gaps = 8/955 (0%)
Query: 1 MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERI 60
MS LHV GFGLKVGHLL MLCCWI+SVI +N F+N +TK L + K+W+ WE++
Sbjct: 1 MSFLHVLGFGLKVGHLLLMLCCWIISVIPVNWFINGGVMETKAGLLSDGGKIWMRLWEKM 60
Query: 61 SGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALG 120
GNS I H +YQ SK+V +TWWRK+L TW+L W +VSLWIF Y+S QA+EKR+E LG
Sbjct: 61 FGNSGKIPHHWYQKFWSKKVGKTWWRKLLFTWVLMWIMVSLWIFSYLSLQASEKRKETLG 120
Query: 121 SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTS 180
SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQ TF RYTERTAFERPLTS
Sbjct: 121 SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQGTFARYTERTAFERPLTS 180
Query: 181 GVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFA 233
GVAYAVRVL SERE+FEKQQGWTIKRMDT E PVH+D EPSP++EEYAPVIFA
Sbjct: 181 GVAYAVRVLHSEREQFEKQQGWTIKRMDTPEQTPVHEDNHASENLEPSPVQEEYAPVIFA 240
Query: 234 QDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPS 293
QDTVSHVISLDMLSGKEDRENVLRARASGK VLTAPFRL KTN LGVILTFAVYK +L S
Sbjct: 241 QDTVSHVISLDMLSGKEDRENVLRARASGKAVLTAPFRLFKTNSLGVILTFAVYKSDLLS 300
Query: 294 NATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVS 353
NATPNERI+AT GYLGG+F IESLVEKLL QLASKQTI VNVYD T+ HPISMYGSNVS
Sbjct: 301 NATPNERIQATHGYLGGVFHIESLVEKLLQQLASKQTILVNVYDTTDTDHPISMYGSNVS 360
Query: 354 DDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRI 413
DDGL VS LNFGDPFRKHEMRCRFKQKAPWP LAI+TS GILVIA LVGHIF ATVNRI
Sbjct: 361 DDGLQHVSALNFGDPFRKHEMRCRFKQKAPWPWLAITTSTGILVIALLVGHIFHATVNRI 420
Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
AKVEEDY MM LKK+AEAADVAKSQFLATVSHEIRTPMNGVLGML ML+DT+LDVTQQD
Sbjct: 421 AKVEEDYRDMMMLKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLIDTDLDVTQQD 480
Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
YVRTAQASGKALVSLINEVLDQAK+ESGKLELE + F+L+AILDDVLSLFSGKSQ+KGVE
Sbjct: 481 YVRTAQASGKALVSLINEVLDQAKIESGKLELEELQFDLQAILDDVLSLFSGKSQEKGVE 540
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
LAVYISDRVP+ LIGDPGRFRQIITNLMGNSIKFTEKGHIFVT++LVEE++DSIEVETE
Sbjct: 541 LAVYISDRVPKMLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTIHLVEELMDSIEVETE- 599
Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
SSSKNTLSG PVADR SW+GF+TFNQ+G TSPF SSS+DLI+LIVSVEDTG GIP EAQ
Sbjct: 600 SSSKNTLSGLPVADRRCSWEGFRTFNQEGLTSPFSSSSSDLIHLIVSVEDTGVGIPEEAQ 659
Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
SR+FTPFMQVGPSISR HGGTGIGLSISK LVG M GEIGFVS PN+GSTFTFTAVF G
Sbjct: 660 SRVFTPFMQVGPSISRIHGGTGIGLSISKCLVGLMNGEIGFVSRPNVGSTFTFTAVFSGG 719
Query: 714 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
S SNE+ Q NNQ N+VSSEFQGM ALVVDP P+RAKVSRYHIQRLGI+VEV SD Q
Sbjct: 720 CSKSNEYKCQPTNNQSNAVSSEFQGMAALVVDPNPVRAKVSRYHIQRLGIRVEVTSDLNQ 779
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
S I+SG+ INM+LVEQ+VW+KD+++S LF N L+KL KLFLLANSISS+R +
Sbjct: 780 VFSSISSGNTAINMVLVEQDVWDKDSNLSALFGNKLKKLDLEVPPKLFLLANSISSTRNS 839
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
+ GV P+VIMKPLR+SMLAASLQRA+GVGNKG +N E PS+SLR+LL GRKIL+VD
Sbjct: 840 AAISGVYNPTVIMKPLRASMLAASLQRALGVGNKGVCQNGEHPSLSLRNLLRGRKILVVD 899
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
DNNVNL+VAA LK+YGA VVC + GK A LL PPH FDACFMDIQMPEMDG+E
Sbjct: 900 DNNVNLRVAAGALKKYGADVVCADSGKSAIPLLKPPHDFDACFMDIQMPEMDGFE 954
>gi|224053503|ref|XP_002297846.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|190148359|gb|ACE63262.1| histidine kinase 3A [Populus trichocarpa]
gi|222845104|gb|EEE82651.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1020
Score = 1483 bits (3840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 733/957 (76%), Positives = 815/957 (85%), Gaps = 11/957 (1%)
Query: 1 MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERI 60
MSLLHV+GFGL+V HLLWMLCCWIVSVISMN F+N +T+ L G+ KMWL C E++
Sbjct: 1 MSLLHVYGFGLRVRHLLWMLCCWIVSVISMNWFINGGVLETQASLLGDGGKMWLKCLEKV 60
Query: 61 SGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALG 120
SGNS IHH YYQ IGSKR+ +TWWRK+L+ W++ W VS+WIFWYMSSQA EKR+E L
Sbjct: 61 SGNSCKIHHHYYQYIGSKRISKTWWRKLLVAWIVGWITVSVWIFWYMSSQAFEKRKETLT 120
Query: 121 SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTS 180
SMCDERARMLQDQFNVSMNHVQAMSILISTFHH KNPSAIDQ TF RYTERTAFERPLTS
Sbjct: 121 SMCDERARMLQDQFNVSMNHVQAMSILISTFHHAKNPSAIDQRTFARYTERTAFERPLTS 180
Query: 181 GVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFA 233
GVAYAVRVL SERE+FEKQQGWTIKRMD+FE NPVHKD EPSPI+EEYAPVIFA
Sbjct: 181 GVAYAVRVLHSEREQFEKQQGWTIKRMDSFEQNPVHKDDNAPKALEPSPIQEEYAPVIFA 240
Query: 234 QDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPS 293
QDTV+HV+SLDMLSG EDRENVLRARASGKGVLTAPFRLLKT RLGVILTFAVYK +LPS
Sbjct: 241 QDTVAHVVSLDMLSGTEDRENVLRARASGKGVLTAPFRLLKTKRLGVILTFAVYKTDLPS 300
Query: 294 NATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVS 353
NATPNERI+ATDGYLGGIFDIESLVEKLL QLASKQTI VNVYD TN S PISMYGSNVS
Sbjct: 301 NATPNERIQATDGYLGGIFDIESLVEKLLQQLASKQTILVNVYDTTNQSCPISMYGSNVS 360
Query: 354 DDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRI 413
DDGL VS LN DPFRKHEMRCRFKQK PWP LAI+TSIGILVIA L+G+IF AT+NRI
Sbjct: 361 DDGLEHVSALNLEDPFRKHEMRCRFKQKPPWPWLAITTSIGILVIALLIGYIFHATMNRI 420
Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
AKVE+D H MMEL K+AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD QQD
Sbjct: 421 AKVEDDCHKMMELTKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDANQQD 480
Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
YVRTAQ SGKALVSLINEVLDQAK+ESGK+ELE + F+LRAI+DDVL+LFSGK+ +KG+E
Sbjct: 481 YVRTAQDSGKALVSLINEVLDQAKIESGKIELEEMQFDLRAIMDDVLALFSGKAHEKGIE 540
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
LAVY+SD VPE LIGDPGRFRQIITNLMGNSIKFT+KGHIF+TV+ VEEV+DSI+VETE
Sbjct: 541 LAVYVSDGVPEMLIGDPGRFRQIITNLMGNSIKFTKKGHIFLTVHPVEEVMDSIDVETE- 599
Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
SSS NTLSG PVADR S GFK F+++GS+ SS+DL+NLIVSVEDTG+GIPLEAQ
Sbjct: 600 SSSLNTLSGLPVADRRRSCAGFKIFSREGSSHTLSPSSSDLVNLIVSVEDTGEGIPLEAQ 659
Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
R+FTPFMQV PSISR +GGTGIGLSISK LVG M GEIGF SIP+ GSTFTFTAVF NG
Sbjct: 660 PRVFTPFMQVDPSISRKYGGTGIGLSISKCLVGLMNGEIGFASIPDTGSTFTFTAVFRNG 719
Query: 714 SSTSNE--HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 771
S SN+ Q++ NQ N+ SEFQ M ALVVDP+P+RA VSRY IQRLGI VE+VSD
Sbjct: 720 CSNSNDSKQQKQRIKNQCNTTPSEFQDMTALVVDPKPVRANVSRYQIQRLGIHVELVSDL 779
Query: 772 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
Q LS I++ ++I MI VEQEVWEKD+S+S FVNNL+K+ G SKLFLL NS+SSSR
Sbjct: 780 NQGLSIISNENRIFKMIFVEQEVWEKDSSISAHFVNNLQKIERGVSSKLFLLGNSLSSSR 839
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILI 891
NT+T G SVI KPL++SMLAASLQRAMG GNKGN RN E PS+SL + L+GRKILI
Sbjct: 840 TNTATSGAYTLSVITKPLKASMLAASLQRAMG-GNKGNPRNGEHPSLSLCNHLVGRKILI 898
Query: 892 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VDDN VNL VAAA LK+YGA V+C + GK A +LL PPHQFDACFMDIQMPEMDG+E
Sbjct: 899 VDDNKVNLIVAAAALKKYGAEVICADSGKMAIKLLKPPHQFDACFMDIQMPEMDGFE 955
>gi|255547688|ref|XP_002514901.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
gi|223545952|gb|EEF47455.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
Length = 1005
Score = 1476 bits (3821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 724/927 (78%), Positives = 803/927 (86%), Gaps = 15/927 (1%)
Query: 30 MNCFMNYESKDTKTDLRGEVF-KMWLNCWERISGNSYYIHHLYYQSIGSKRVRETWWRKV 88
MN F+N E +TKT L G+ KMWL WE+IS ++ +H YYQ IGSKRVR+TWWRK+
Sbjct: 1 MNWFINGEIVETKTGLLGDGGGKMWLKFWEKISKSNCKMHQHYYQYIGSKRVRKTWWRKL 60
Query: 89 LITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILI 148
L+ W++ W +VSLWIFWYMSSQATEKR+EAL SMCDERARMLQDQFNVSMNHVQAMSILI
Sbjct: 61 LMAWVIGWIMVSLWIFWYMSSQATEKRKEALASMCDERARMLQDQFNVSMNHVQAMSILI 120
Query: 149 STFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMD 208
STFHHGKNPSAIDQ TF RYTERTAFERPLTSGVAYAVRVL SERE+FE+QQGWTIK+MD
Sbjct: 121 STFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFERQQGWTIKKMD 180
Query: 209 TFEHNPVHKD-------EPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARAS 261
T E NPVHKD EPSPI+EEYAPVIFAQDT+SHV+S+DMLSGKEDRENVLRAR S
Sbjct: 181 TLEQNPVHKDDYIPELLEPSPIQEEYAPVIFAQDTISHVVSIDMLSGKEDRENVLRARES 240
Query: 262 GKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKL 321
G GVLTAPFRLLKTNRLGVILTFAVYKR+LPSNATPNERI+ATDGYLGG+FDIESLVEKL
Sbjct: 241 GTGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIESLVEKL 300
Query: 322 LHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQK 381
L QLASKQTI V+VYD TN SHPISMYGSNVSD+GL VS LNFGDP RKHEM CRFKQK
Sbjct: 301 LQQLASKQTILVDVYDTTNESHPISMYGSNVSDNGLQHVSALNFGDPHRKHEMHCRFKQK 360
Query: 382 APWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFL 441
APWP LAI+TSIG+LVI L+GHIF ATVNRIAKVE+DYH MMELKK+AEAAD+AKSQFL
Sbjct: 361 APWPWLAITTSIGVLVIVLLIGHIFHATVNRIAKVEDDYHEMMELKKRAEAADIAKSQFL 420
Query: 442 ATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 501
ATVSHEIRTPMNGVLGML MLMDT LDVTQQDYVRTAQASGKALVSLINEVLDQAK+ESG
Sbjct: 421 ATVSHEIRTPMNGVLGMLHMLMDTNLDVTQQDYVRTAQASGKALVSLINEVLDQAKIESG 480
Query: 502 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLM 561
KLELE V FNLRAILDDVL LFS K+Q KGVELAVYISD VPE LIGDPGRFRQII NLM
Sbjct: 481 KLELENVQFNLRAILDDVLPLFSEKAQVKGVELAVYISDSVPELLIGDPGRFRQIIINLM 540
Query: 562 GNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 621
GNSIKFT +GH+FVTV+LVEEV+DSI+VET SSS+NT+SG+PVADR SW GF+TF+Q+
Sbjct: 541 GNSIKFTHQGHVFVTVHLVEEVIDSIDVETG-SSSRNTVSGFPVADRRRSWAGFRTFSQE 599
Query: 622 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSIS 681
GS SS D INLIVSVEDTG+GIPLEAQ RIF PFMQVGPS SR +GGTGIGLSIS
Sbjct: 600 GSNRALLPSS-DHINLIVSVEDTGEGIPLEAQPRIFIPFMQVGPSTSRKYGGTGIGLSIS 658
Query: 682 KYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKA 741
K LVG M GEIGFVSIP IG+TFTFTAVF NG S +NE NSQ++++Q N+++SEF+GM A
Sbjct: 659 KCLVGLMNGEIGFVSIPRIGTTFTFTAVFANGCSNTNECNSQKISSQSNTITSEFRGMTA 718
Query: 742 LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSV 801
L+VD RP+RAKVSRYH+QRLG+ VEVVSD Q LS I SG+ +IN++L+EQEVW+KD+S+
Sbjct: 719 LIVDSRPVRAKVSRYHVQRLGMHVEVVSDLNQALSSINSGNILINVVLIEQEVWDKDSSI 778
Query: 802 STLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 861
S LFVNN RK+ G KLFLLANSI+SSRAN V PSVIMKPLR+SMLAASLQRA
Sbjct: 779 SALFVNNTRKIDHGVSPKLFLLANSINSSRANAVASAVYTPSVIMKPLRASMLAASLQRA 838
Query: 862 MGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK 921
MGVGNKGN N E L +LLLGRKILIVDDN+VNLKVAA LK+YGA VVC+E G+K
Sbjct: 839 MGVGNKGNAHNGE-----LSNLLLGRKILIVDDNSVNLKVAAGALKKYGADVVCIESGEK 893
Query: 922 ATELLMPPHQFDACFMDIQMPEMDGYE 948
A +LL PPHQFDACFMDIQMPEMDG+E
Sbjct: 894 AIKLLTPPHQFDACFMDIQMPEMDGFE 920
>gi|356512385|ref|XP_003524900.1| PREDICTED: histidine kinase 3-like [Glycine max]
Length = 1030
Score = 1440 bits (3727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 715/958 (74%), Positives = 803/958 (83%), Gaps = 13/958 (1%)
Query: 1 MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTK--TDLRGEVFKMW-LNCW 57
MSLLHV GF LKVGHLL +LCCW+VSV+ +N F++ +TK G KMW W
Sbjct: 1 MSLLHVVGFALKVGHLLLVLCCWVVSVVYLNWFISSGIMETKMMGGGGGGGGKMWHKKWW 60
Query: 58 ERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRRE 117
E ISG IH YYQ IGSK+V+ WRK+L+TW++ W +VSLWIF YMS Q TEKR+E
Sbjct: 61 ENISGQGCKIHQQYYQYIGSKKVKRALWRKILLTWVVGWFIVSLWIFSYMSLQGTEKRKE 120
Query: 118 ALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERP 177
L SMCDERARMLQDQFNVSMNH+QAMSILISTFHH K+PSAIDQ TF +YTERTAFERP
Sbjct: 121 TLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQKTFAKYTERTAFERP 180
Query: 178 LTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPV 230
LTSGVAYAVRVL SERE+FEKQQGWTIKRMDT E NPVHKD EPSP++EEYAPV
Sbjct: 181 LTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPVQEEYAPV 240
Query: 231 IFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRE 290
IFAQDT++HVIS+++LSGKEDRENVLRAR SGKGVLTAPFRLLKTNRLGVILTFAVYKR+
Sbjct: 241 IFAQDTIAHVISVNVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRD 300
Query: 291 LPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGS 350
LPSNATPNERI+ATDGYLGG+FD+ESLVEKLL QLASKQ++ VNVYD TN +HPI+MYGS
Sbjct: 301 LPSNATPNERIQATDGYLGGVFDVESLVEKLLQQLASKQSVIVNVYDTTNHTHPIAMYGS 360
Query: 351 NVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATV 410
N S D + VSTLNFGDPFRKHEM CRFKQK PWP +AI+TSIGILVIA LVGHIF ATV
Sbjct: 361 NESGDVFFHVSTLNFGDPFRKHEMHCRFKQKPPWPWVAITTSIGILVIALLVGHIFHATV 420
Query: 411 NRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT 470
NRIA+VE+DY MELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LDVT
Sbjct: 421 NRIAEVEDDYRKEMELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVT 480
Query: 471 QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDK 530
QQ+YVRTAQ SGKALVSLINEVLDQAK+E GKLELEAV F++RAILDDVLSLFS KSQ K
Sbjct: 481 QQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGK 540
Query: 531 GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 590
GVELAVY+SD VPE LIGDPGRFRQIITNLMGNSIKFT+KGHIFVT++LVEEVV SIEV+
Sbjct: 541 GVELAVYVSDHVPELLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVVRSIEVD 600
Query: 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 650
E S+S+NTLSG PVAD SW+GFK F+Q+G F S S+DL+NLIVSVEDTG+GIPL
Sbjct: 601 KE-SNSENTLSGSPVADSRRSWEGFKAFSQEGPLGSFSSPSSDLVNLIVSVEDTGEGIPL 659
Query: 651 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710
E+Q I+TPFMQVGPSISR HGGTGIGLSISK LVG M GEIGFVSIP GSTFTFTAVF
Sbjct: 660 ESQPLIYTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKTGSTFTFTAVF 719
Query: 711 GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 770
NG +SNE QQ+NNQP+S SSEF+GM AL++DPR +RAKVSRYHIQRLGI VE+VSD
Sbjct: 720 TNGHCSSNECKVQQINNQPHSASSEFEGMTALIIDPRSVRAKVSRYHIQRLGIHVEMVSD 779
Query: 771 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
Q LS I++G+ IINM+L+EQEVW++D +S+ FVNN R++ G KLF+L NS SS
Sbjct: 780 LKQGLSTISNGNIIINMVLIEQEVWDRDLGLSSHFVNNTRRIDQGVPPKLFILVNSSSSF 839
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
+A+ + GV P VI KPLR+SMLAASLQRAMGV NKG EL S+SLRHLL GRKIL
Sbjct: 840 KASVNL-GVHNPIVITKPLRASMLAASLQRAMGVQNKGAPHR-ELQSLSLRHLLRGRKIL 897
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
IVDDN+VN VAA LK+YGA VVCV GK A L PPHQFDACFMDIQMPEMDG+E
Sbjct: 898 IVDDNSVNRAVAAGALKKYGADVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGFE 955
>gi|356525172|ref|XP_003531201.1| PREDICTED: histidine kinase 3-like [Glycine max]
Length = 1030
Score = 1426 bits (3692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 712/958 (74%), Positives = 801/958 (83%), Gaps = 13/958 (1%)
Query: 1 MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYES-KDTKTDLRGEVF-KMW-LNCW 57
MSLLHV GFGLKVGHLL +LCCW+VSV+ +N F++ DTK G KMW W
Sbjct: 1 MSLLHVVGFGLKVGHLLLVLCCWVVSVVYLNWFLSSGIIMDTKMGGGGGGGSKMWHKKWW 60
Query: 58 ERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRRE 117
E+ISG IH YYQ IGSK+V+ WRK+L+TW++ W +VSL IF YMSSQ TEKR+E
Sbjct: 61 EKISGQGCKIHQQYYQYIGSKKVKRALWRKLLLTWVVGWFIVSLRIFCYMSSQGTEKRKE 120
Query: 118 ALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERP 177
L SMCDERARMLQDQFNVSMNH+QAMSILISTFHH K+PSAIDQ TF +YTERTAFERP
Sbjct: 121 TLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQKTFAKYTERTAFERP 180
Query: 178 LTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPV 230
LTSGVAYAVRVL SERE+FEKQQGWTIKRMDT E NPVHKD EPSP++EEYAPV
Sbjct: 181 LTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPVQEEYAPV 240
Query: 231 IFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRE 290
IFAQDT++HVIS+++LSGKEDRENVLRAR SGKGVLTAPFRLLKTNRLGVILTFAVYKR+
Sbjct: 241 IFAQDTIAHVISVNVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRD 300
Query: 291 LPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGS 350
LPSN TPNERI+ATDGYLGG+FD+ESLVEKLL QLASKQT+ V+VYD TN +HPI+MYGS
Sbjct: 301 LPSNTTPNERIQATDGYLGGVFDVESLVEKLLQQLASKQTVIVHVYDTTNRTHPIAMYGS 360
Query: 351 NVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATV 410
N S D + VSTLNFGDPFRKHEM CRFKQK PWP +AI+TSIGILVIA LVG+IF ATV
Sbjct: 361 NESGDFFYHVSTLNFGDPFRKHEMHCRFKQKPPWPWVAITTSIGILVIALLVGYIFHATV 420
Query: 411 NRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT 470
NRIAKVE+DY MMELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LDVT
Sbjct: 421 NRIAKVEDDYREMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVT 480
Query: 471 QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDK 530
QQ+YVRTAQ SGKALVSLINEVLDQAK+E GKLELEAV F++RAILDDVLSLFS KSQ K
Sbjct: 481 QQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGK 540
Query: 531 GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 590
VELAVY+SD VPE LIGDPGRFRQIITNLMGNSIKFT+KGHIFVT++LVEEVV SIEV+
Sbjct: 541 RVELAVYVSDHVPELLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVVRSIEVD 600
Query: 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 650
E S+S+NTLSG PVAD SW+GFK F+Q+G F S S DL+NLIVSVEDTG+GIPL
Sbjct: 601 KE-SNSENTLSGSPVADSRRSWEGFKAFSQEGPLGSFSSPSNDLVNLIVSVEDTGEGIPL 659
Query: 651 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710
E+Q IFTPFMQVG SISR HGGTGIGLSISK LVG M GEIGFVSIP IGSTFTFTAVF
Sbjct: 660 ESQPLIFTPFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKIGSTFTFTAVF 719
Query: 711 GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 770
NG +S+E QQ+NNQP S SSEF+GM AL++DPR +RA+VS YHIQRLGI VE+VSD
Sbjct: 720 TNGHRSSSECKIQQINNQPQSASSEFEGMTALIIDPRSVRAEVSGYHIQRLGIHVEMVSD 779
Query: 771 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
Q LS I++G+ ++NM+L+EQEVW++D +S+ FVNN R++ G KLF+L NS SS
Sbjct: 780 LKQGLSTISNGNVVVNMVLIEQEVWDRDLGLSSHFVNNTRRIDHGVPPKLFILVNSSSSF 839
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
+A+ + GV P+VI KPLR+SMLAASLQRAMGV NKG EL S+SLRHLL GRKIL
Sbjct: 840 KASVNL-GVHNPTVITKPLRASMLAASLQRAMGVQNKGAPHR-ELQSLSLRHLLRGRKIL 897
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
IVDDN VN VAA LK+YGA VVCV GK A L PPHQFDACFMDIQMPEMDG+E
Sbjct: 898 IVDDNGVNRAVAAGALKKYGADVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGFE 955
>gi|116109353|gb|ABJ74169.1| histidine kinase 1 [Medicago sativa]
Length = 1027
Score = 1422 bits (3680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 703/963 (73%), Positives = 801/963 (83%), Gaps = 18/963 (1%)
Query: 1 MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERI 60
MSLLHV GF LKVGHLL +LCCWIVS+I +N F+ S DTK G+ KMWL CWE+I
Sbjct: 1 MSLLHVIGFSLKVGHLLLVLCCWIVSLIYINWFI---SMDTKMGFLGDGGKMWLKCWEKI 57
Query: 61 SGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALG 120
G++ IH YYQ IGSKRVR WRK+L+ W+L W +VSLWIF ++ TEKR+E L
Sbjct: 58 LGSTCKIHQQYYQCIGSKRVRRKLWRKLLLAWVLGWFIVSLWIFCGINLHNTEKRKETLA 117
Query: 121 SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTS 180
SMCDERARMLQDQFNVSMNH+QAMSILISTFHH KNPSAIDQ TF +YTERTAFERPLTS
Sbjct: 118 SMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQKTFAKYTERTAFERPLTS 177
Query: 181 GVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFA 233
GVAYAVRVL+SERE+FEKQQGW+IKRMDT E NPVH+D EP PI EEYAPVIFA
Sbjct: 178 GVAYAVRVLQSEREQFEKQQGWSIKRMDTMEQNPVHEDDYVPDELEPPPIHEEYAPVIFA 237
Query: 234 QDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPS 293
QDT+SHVIS+D+LSGKEDRENVLRAR SGKGVLTAPFRLLKTNRLGVILTFAVYKR+LPS
Sbjct: 238 QDTISHVISIDVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPS 297
Query: 294 NATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVS 353
NATPNERI+ATDGYLGG+F+IESLVEKLL QLASKQT+ VNVYD TN +HPI MYGS+VS
Sbjct: 298 NATPNERIQATDGYLGGVFEIESLVEKLLQQLASKQTVLVNVYDTTNQTHPIPMYGSDVS 357
Query: 354 DDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRI 413
D + VS LNFGDPFRKHEM CRFKQK P+P LA TSIGILVI LVGHI ATV+RI
Sbjct: 358 GDEFYHVSFLNFGDPFRKHEMHCRFKQKPPFPRLATGTSIGILVITLLVGHICHATVSRI 417
Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
AKVE DY MM LKK+AEAADVAKSQFLATVSHEIRTPMNGVLGM++MLMDT+LDVTQQ+
Sbjct: 418 AKVESDYQEMMVLKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMMNMLMDTDLDVTQQE 477
Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
YVRTAQ SGKALVS+INEVLDQAK+ESGK+ELEAV F++RAI+DDVLSLFS KSQ KGVE
Sbjct: 478 YVRTAQGSGKALVSIINEVLDQAKIESGKIELEAVLFDIRAIMDDVLSLFSEKSQGKGVE 537
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
LAVY+SD+VP+ LIGDPGRFRQIITNLMGNSIKFT+KGHIFVT++LVEEV SIEVE E
Sbjct: 538 LAVYVSDQVPQQLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVFHSIEVERES 597
Query: 594 SS--SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSA-DLINLIVSVEDTGQGIPL 650
+S +++TLSG+PVAD SW+GF+ F+ +G F S+S+ DLI+LIVSVEDTG GIPL
Sbjct: 598 TSKDAEHTLSGFPVADGRRSWEGFRAFSHEGPLGSFSSTSSNDLISLIVSVEDTGDGIPL 657
Query: 651 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710
E+Q IFTPFMQVGPSISR HGGTGIGLSISK LVG M GEIGFVS P IGSTFTFTAVF
Sbjct: 658 ESQPMIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSEPKIGSTFTFTAVF 717
Query: 711 GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 770
N SNE +QQ+NNQP+ +SEF GM ALV+DPRP+RA+VSRYH QRLG++VE+VSD
Sbjct: 718 TNACPNSNELQTQQINNQPHPATSEFNGMAALVIDPRPVRAEVSRYHRQRLGVRVEIVSD 777
Query: 771 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL-----GCGFQSKLFLLAN 825
Q LS + G INM+L+EQEVWE+D+S+S+ FVNN+RK+ G KLF+L N
Sbjct: 778 LKQGLSTVTDGDASINMVLIEQEVWERDSSISSHFVNNIRKIVEVDKGKEIPPKLFILVN 837
Query: 826 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL 885
S SS RA+++ + P+V+ KPLR+SMLAASLQRAMGVGNKGN RN E +SL+HLL
Sbjct: 838 SSSSFRASSTASCLHNPTVVTKPLRASMLAASLQRAMGVGNKGNPRNGEHQGLSLKHLLS 897
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
GRKILIVDDN+VN VAA LK+YGA VVCV G +A +L PPHQFDACFMDIQMPEMD
Sbjct: 898 GRKILIVDDNSVNRTVAAGALKKYGAGVVCVSSGIEAITMLRPPHQFDACFMDIQMPEMD 957
Query: 946 GYE 948
G+E
Sbjct: 958 GFE 960
>gi|357462961|ref|XP_003601762.1| Histidine kinase [Medicago truncatula]
gi|355490810|gb|AES72013.1| Histidine kinase [Medicago truncatula]
Length = 1047
Score = 1421 bits (3679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 703/976 (72%), Positives = 803/976 (82%), Gaps = 31/976 (3%)
Query: 1 MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERI 60
MSLLHV GF LKVGHLL +LCCWIVS+I +N F+ S DTK G+ KMWL WE+I
Sbjct: 8 MSLLHVIGFSLKVGHLLLVLCCWIVSLIYINWFI---SMDTKMGFLGDGGKMWLKWWEKI 64
Query: 61 SGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALG 120
G++ IH YYQ IGSKRVR WRK+L+ W+L W + SLWIF ++ TEKR+E L
Sbjct: 65 LGSTCKIHQQYYQCIGSKRVRRELWRKLLLAWVLGWFIASLWIFCGINLHNTEKRKETLA 124
Query: 121 SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTS 180
SMCDERARMLQDQFNVSMNH+QAMSILISTFHH KNPSAIDQ TF +YTERTAFERPLTS
Sbjct: 125 SMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQKTFAKYTERTAFERPLTS 184
Query: 181 GVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFA 233
GVAYAVRVL+SERE+FEKQQGW+IKRMDT E NPVH+D EPSPI EEYAPVIFA
Sbjct: 185 GVAYAVRVLQSEREQFEKQQGWSIKRMDTMEQNPVHEDDYVPDELEPSPIHEEYAPVIFA 244
Query: 234 QDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPS 293
QDT+SHVIS+D+LSGKEDRENVLRAR SGKGVLTAPFRLLKTNRLGVILTFAVYKR+LPS
Sbjct: 245 QDTISHVISIDVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPS 304
Query: 294 NATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVS 353
NATPNERI+ATDGYLGG+F+IESLVEKLL QLASKQT+ VNVYD TN +H I MYGS+VS
Sbjct: 305 NATPNERIQATDGYLGGVFEIESLVEKLLQQLASKQTVLVNVYDTTNQTHSIPMYGSDVS 364
Query: 354 DDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRI 413
D + VS LNFGDPFRKHEM CRFKQK P+P LA TSIGILVIA LVGHIF ATV+RI
Sbjct: 365 GDEFYHVSFLNFGDPFRKHEMHCRFKQKPPFPRLATGTSIGILVIALLVGHIFHATVSRI 424
Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
AKVE+DY MM LKK+AEAADVAKSQFLATVSHEIRTPMNGVLGM++MLMDT+LDVTQQ+
Sbjct: 425 AKVEDDYQEMMVLKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMMNMLMDTDLDVTQQE 484
Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
YVRTAQ SGKALVS+INEVLDQAK+ESGK+ELEAV F++R+I+DDVLSLFS KSQ KGVE
Sbjct: 485 YVRTAQGSGKALVSIINEVLDQAKIESGKIELEAVLFDIRSIMDDVLSLFSEKSQGKGVE 544
Query: 534 -------------LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580
LAVY+SD+VP+ LIGDPGRFRQIITNLMGNSIKFT+KGHIFVT++LV
Sbjct: 545 ALRVWFYSFLGAKLAVYVSDQVPQQLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLV 604
Query: 581 EEVVDSIEVETELSS--SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSA-DLINL 637
EEV SIEVE E +S +++TLSG+PVAD SW+GF+ F+ +G F S+S+ DLI+L
Sbjct: 605 EEVFHSIEVERESTSKDAEHTLSGFPVADGRRSWEGFRAFSHEGPLGSFSSTSSNDLISL 664
Query: 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697
IVSVEDTG GIPLE+Q IFTPFMQVGPSISR HGGTGIGLSISK LVG M GEIGFVS
Sbjct: 665 IVSVEDTGDGIPLESQPMIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSE 724
Query: 698 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 757
P IGSTFTFTAVF N SNE +QQ+NNQP+ +SEF GM ALV+DPRP+RA+VSRYH
Sbjct: 725 PKIGSTFTFTAVFTNACPNSNELKTQQINNQPHPATSEFNGMAALVIDPRPVRAEVSRYH 784
Query: 758 IQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL----- 812
IQRLG++VE+VSD Q LS + G +NMIL+EQEVW++D+S+S+ FVNN+RK+
Sbjct: 785 IQRLGVRVEIVSDLKQGLSTVTDGDASVNMILIEQEVWDRDSSISSHFVNNIRKVVEIDK 844
Query: 813 GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRN 872
G G KLF+L NS SS RA ++ + P+V+ KPLR+SMLAASLQRAMGVGNKGN RN
Sbjct: 845 GKGIPPKLFILVNSSSSFRAGSTASCLHNPTVVTKPLRASMLAASLQRAMGVGNKGNPRN 904
Query: 873 WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF 932
E +SL+HLL GRKILIVDDN+VN VAA LK+YGA VVCV G +A +L PPHQF
Sbjct: 905 GEHQGLSLKHLLSGRKILIVDDNSVNRTVAAGALKKYGAGVVCVSSGIEAITMLRPPHQF 964
Query: 933 DACFMDIQMPEMDGYE 948
DACFMDIQMPEMDG+E
Sbjct: 965 DACFMDIQMPEMDGFE 980
>gi|449445544|ref|XP_004140532.1| PREDICTED: histidine kinase 3-like [Cucumis sativus]
gi|449518188|ref|XP_004166125.1| PREDICTED: histidine kinase 3-like [Cucumis sativus]
Length = 1010
Score = 1359 bits (3517), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 686/927 (74%), Positives = 781/927 (84%), Gaps = 10/927 (1%)
Query: 30 MNCFMNYESKDTKTDLRGEVFKMWLNCWERISGNSYYIHHLYYQSIGSKRVRETWWRKVL 89
MN F+N +TK L G K+WL WE + GN ++H YYQ IGSK+V++TWWR++L
Sbjct: 1 MNWFINGGVMETKAGLLGGGGKIWLQLWETVIGNCCKMYHQYYQYIGSKKVKKTWWRRLL 60
Query: 90 ITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILIS 149
+ W+L L SLWIF YMSSQATEKR+EALGSMCDERARMLQDQFNVSMNH+QAMSILIS
Sbjct: 61 VAWVLSSILASLWIFHYMSSQATEKRKEALGSMCDERARMLQDQFNVSMNHIQAMSILIS 120
Query: 150 TFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDT 209
TFHHGKNPSAIDQ TF RYTERTAFERPLTSGVAYAVRVL S+RE FEKQQGWTIKRMD
Sbjct: 121 TFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSDRERFEKQQGWTIKRMDK 180
Query: 210 FEHNPVHKD-------EPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASG 262
E +PVH+D EPSP ++EYAPVIFAQDT+SHV+SLDMLSG EDR NVLRARASG
Sbjct: 181 IEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLDMLSGVEDRNNVLRARASG 240
Query: 263 KGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLL 322
KGVLTAPF+L+KTNRLGVILTFAVYKR+LPSNATPNERI+ATDGYLGG+FDIESLVEKLL
Sbjct: 241 KGVLTAPFKLIKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIESLVEKLL 300
Query: 323 HQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKA 382
QLAS QTI VNVYD TN SHPISMYG +VS+DGL VS LNFGDP RKHEMRCRFKQK
Sbjct: 301 QQLASNQTILVNVYDTTNQSHPISMYGKDVSEDGLQHVSPLNFGDPDRKHEMRCRFKQKQ 360
Query: 383 PWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLA 442
PWP LA++TSIGIL+IA L+G+IF AT+NRIAKVE+DYH MM LKK+AE AD+AKSQFLA
Sbjct: 361 PWPWLAMTTSIGILIIALLLGYIFHATLNRIAKVEDDYHEMMVLKKRAEDADIAKSQFLA 420
Query: 443 TVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 502
TVSHEIRTPMNGVLGML +LMDT+LDVTQQDYV+TAQ SGKALVSLINEVLDQAK+ESGK
Sbjct: 421 TVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTAQDSGKALVSLINEVLDQAKIESGK 480
Query: 503 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMG 562
LELEA+ FNLRA LDD+LSLFSGKSQ+KG+ELAVY+SD VPETL+GDPGRFRQIITNL+G
Sbjct: 481 LELEAIPFNLRADLDDILSLFSGKSQEKGLELAVYVSDSVPETLVGDPGRFRQIITNLVG 540
Query: 563 NSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDG 622
NSIKFTEKGHIFVTV LV+EV++SI++E E SS +TLSGYPVA+R SW GF+TF+Q+G
Sbjct: 541 NSIKFTEKGHIFVTVNLVKEVIESIDLEIE-SSKNSTLSGYPVANRRLSWAGFRTFSQEG 599
Query: 623 STS-PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSIS 681
ST+ F +S DLINL+VSVEDTG GIPLEAQSRIFTPFMQV PSISRTHGGTGIGLSIS
Sbjct: 600 STACHFMTSPPDLINLMVSVEDTGVGIPLEAQSRIFTPFMQVRPSISRTHGGTGIGLSIS 659
Query: 682 KYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKA 741
K LVG MKGEIGFVS+P IGSTFTFTAVF N S++S +N+QQ+ N S +SEF+GM+A
Sbjct: 660 KCLVGLMKGEIGFVSVPKIGSTFTFTAVFTNCSNSSEYNNTQQIKNTSISATSEFKGMRA 719
Query: 742 LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSV 801
LVVD +PIRAKVSRYHIQRL I VEV+SD QCLS +NMI VEQ++W+++ S
Sbjct: 720 LVVDHQPIRAKVSRYHIQRLAINVEVLSDLNQCLSTTTISGSTVNMIFVEQKLWDQNVST 779
Query: 802 STLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 861
S F+ NLR KLFLL +SISSS+A+T+ V P+VI+KPLR+ MLAASL R
Sbjct: 780 SDHFIKNLRN-SYAVPPKLFLLTSSISSSKASTTVSDVFTPTVILKPLRAGMLAASLHRV 838
Query: 862 MGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK 921
M VG KGN RN ELP +SLR+LLLGRKIL++DDN VN VAA L+RYGA VVC G+
Sbjct: 839 MNVGIKGNPRNGELPVLSLRNLLLGRKILVIDDNKVNRIVAAGALQRYGADVVCENSGRD 898
Query: 922 ATELLMPPHQFDACFMDIQMPEMDGYE 948
A +LL PPH FDACFMDIQMPEMDG+E
Sbjct: 899 AIQLLTPPHHFDACFMDIQMPEMDGFE 925
>gi|297845680|ref|XP_002890721.1| hypothetical protein ARALYDRAFT_472928 [Arabidopsis lyrata subsp.
lyrata]
gi|297336563|gb|EFH66980.1| hypothetical protein ARALYDRAFT_472928 [Arabidopsis lyrata subsp.
lyrata]
Length = 1039
Score = 1329 bits (3439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 683/970 (70%), Positives = 771/970 (79%), Gaps = 38/970 (3%)
Query: 1 MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLR-GEVFKM------- 52
MSL HV GFG+K+GHL WMLCCW VS F++ +D K+ L G V +
Sbjct: 1 MSLFHVLGFGVKIGHLFWMLCCWFVS-----WFVDNGIEDNKSGLLIGSVGDLEKTKMTT 55
Query: 53 -------WLNCWERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFW 105
W W +IS + I YQ +GS + + WWRK+++ W++FW LVS+W+FW
Sbjct: 56 MKKKNKMWF--WNKISSSGLKIPSFSYQFLGSVKFNKAWWRKLVVVWVVFWVLVSIWMFW 113
Query: 106 YMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTF 165
Y SSQA EKR+E L SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGK PSAIDQ TF
Sbjct: 114 YFSSQAMEKRKETLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKIPSAIDQRTF 173
Query: 166 TRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD------- 218
+ YT+RT+FERPLTSGVAYA+RVL SEREEFE+QQGWTI++M + E NPVHKD
Sbjct: 174 SEYTDRTSFERPLTSGVAYAMRVLHSEREEFERQQGWTIRKMYSLEQNPVHKDDYDLEAL 233
Query: 219 EPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRL 278
EPSP++EEYAPVIFAQDTVSHV+SLDMLSGKEDRENVLRAR+SGKGVLTAPF L+KTNRL
Sbjct: 234 EPSPVQEEYAPVIFAQDTVSHVVSLDMLSGKEDRENVLRARSSGKGVLTAPFPLIKTNRL 293
Query: 279 GVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDI 338
GVILTFAVYKR+LPSNATP ERIEAT+GYLGG+FDIESLVE LL QLASKQTI VNVYD
Sbjct: 294 GVILTFAVYKRDLPSNATPKERIEATNGYLGGVFDIESLVENLLQQLASKQTILVNVYDT 353
Query: 339 TNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVI 398
TN S PISMYGSNVS DGL VS L FGDPFRKHEMRCRFKQK PWP+L++ TS GILVI
Sbjct: 354 TNHSQPISMYGSNVSADGLERVSPLIFGDPFRKHEMRCRFKQKPPWPVLSMVTSFGILVI 413
Query: 399 ASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGM 458
A LV HI ATV+RI KVEED M +LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGM
Sbjct: 414 ALLVAHIIHATVSRIHKVEEDCDKMKQLKKKAEAADVAKSQFLATVSHEIRTPMNGVLGM 473
Query: 459 LDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 518
L MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK+ESGKLELE V F+LR ILDD
Sbjct: 474 LHMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEEVRFDLRGILDD 533
Query: 519 VLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVY 578
VLSLFS KSQ KGVELAVYISDRVP+ LIGDPGRFRQI+TNLMGNSIKFTEKGHIFVTV+
Sbjct: 534 VLSLFSSKSQQKGVELAVYISDRVPDMLIGDPGRFRQILTNLMGNSIKFTEKGHIFVTVH 593
Query: 579 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLI 638
LVEE+ +SI+ ET SS ++TLSG PVADR SW+ FK F+ + + F+ S D INLI
Sbjct: 594 LVEELFESIDGETA-SSPESTLSGLPVADRQRSWENFKAFSNEHRS--FEPSPLD-INLI 649
Query: 639 VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 698
VSVEDTG GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISK LVG MKGEIGF S P
Sbjct: 650 VSVEDTGVGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFSSTP 709
Query: 699 NIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHI 758
+GSTFTFTAVF NG T+ N Q NNQP + SEF+GMKA+VVD RP RAKVS YH
Sbjct: 710 KVGSTFTFTAVFSNGMQTTERKNDPQNNNQP--IFSEFRGMKAVVVDHRPARAKVSWYHF 767
Query: 759 QRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818
QRLGI+VEVV Q L + G+ +NMIL+EQE+W K+ V F+ L+K
Sbjct: 768 QRLGIRVEVVPRVEQALRYLKIGTTTVNMILIEQEIWNKEAEV---FIKKLQKDPLFLSP 824
Query: 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
KL LLANS+ SS + G+ P VI+KPLR+SMLAA+LQR +G+G + ++ P++
Sbjct: 825 KLILLANSVESSISEALCTGIDPPIVIVKPLRASMLAATLQRGLGIGIREPPQHKGPPAL 884
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938
LR+LLLGRKILIVDDNNVNL+VAA LK+YGA VVC E G KA LL PPH+FDACFMD
Sbjct: 885 ILRNLLLGRKILIVDDNNVNLRVAAGALKKYGADVVCAESGIKAISLLKPPHEFDACFMD 944
Query: 939 IQMPEMDGYE 948
IQMPEMDG+E
Sbjct: 945 IQMPEMDGFE 954
>gi|18396292|ref|NP_564276.1| histidine kinase 3 [Arabidopsis thaliana]
gi|75168994|sp|Q9C5U1.1|AHK3_ARATH RecName: Full=Histidine kinase 3; AltName: Full=Arabidopsis
histidine kinase 3; Short=AtHK3; AltName: Full=Protein
AUTHENTIC HIS-KINASE 3; AltName: Full=Protein ORESARA 12
gi|13537198|dbj|BAB40775.1| histidine kinase [Arabidopsis thaliana]
gi|332192685|gb|AEE30806.1| histidine kinase 3 [Arabidopsis thaliana]
Length = 1036
Score = 1317 bits (3408), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 679/969 (70%), Positives = 767/969 (79%), Gaps = 39/969 (4%)
Query: 1 MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEV----------- 49
MSL HV GFG+K+GHL WMLCCW VS F++ +D L G V
Sbjct: 1 MSLFHVLGFGVKIGHLFWMLCCWFVS-----WFVDNGIEDKSGLLVGSVGDLEKTKMTTL 55
Query: 50 ---FKMWLNCWERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWY 106
KMW W +IS + I YQ +GS + + WWRK+++ W++FW LVS+W FWY
Sbjct: 56 KKKNKMWF--WNKISSSGLKIPSFSYQFLGSVKFNKAWWRKLVVVWVVFWVLVSIWTFWY 113
Query: 107 MSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFT 166
SSQA EKR+E L SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGK PSAIDQ TF+
Sbjct: 114 FSSQAMEKRKETLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKIPSAIDQRTFS 173
Query: 167 RYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------E 219
YT+RT+FERPLTSGVAYA+RVL SEREEFE+QQGWTI++M + E NPVHKD E
Sbjct: 174 EYTDRTSFERPLTSGVAYAMRVLHSEREEFERQQGWTIRKMYSLEQNPVHKDDYDLEALE 233
Query: 220 PSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLG 279
PSP++EEYAPVIFAQDTVSHV+SLDMLSGKEDRENVLRAR+SGKGVLTAPF L+KTNRLG
Sbjct: 234 PSPVQEEYAPVIFAQDTVSHVVSLDMLSGKEDRENVLRARSSGKGVLTAPFPLIKTNRLG 293
Query: 280 VILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDIT 339
VILTFAVYKR+LPSNATP ERIEAT+GYLGG+FDIESLVE LL QLASKQTI VNVYDIT
Sbjct: 294 VILTFAVYKRDLPSNATPKERIEATNGYLGGVFDIESLVENLLQQLASKQTILVNVYDIT 353
Query: 340 NLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIA 399
N S PISMYG+NVS DGL VS L FGDP RKHEMRCRFKQK PWP+L++ TS GILVIA
Sbjct: 354 NHSQPISMYGTNVSADGLERVSPLIFGDPLRKHEMRCRFKQKPPWPVLSMVTSFGILVIA 413
Query: 400 SLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGML 459
LV HI ATV+RI KVEED M +LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGML
Sbjct: 414 LLVAHIIHATVSRIHKVEEDCDKMKQLKKKAEAADVAKSQFLATVSHEIRTPMNGVLGML 473
Query: 460 DMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 519
MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK+ESGKLELE V F+LR ILDDV
Sbjct: 474 HMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEEVRFDLRGILDDV 533
Query: 520 LSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL 579
LSLFS KSQ KGVELAVYISDRVP+ LIGDPGRFRQI+TNLMGNSIKFTEKGHIFVTV+L
Sbjct: 534 LSLFSSKSQQKGVELAVYISDRVPDMLIGDPGRFRQILTNLMGNSIKFTEKGHIFVTVHL 593
Query: 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIV 639
V+E+ +SI+ ET SS ++TLSG PVADR SW+ FK F+ +G S F+ S D INLIV
Sbjct: 594 VDELFESIDGETA-SSPESTLSGLPVADRQRSWENFKAFSSNGHRS-FEPSPPD-INLIV 650
Query: 640 SVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699
SVEDTG GIP+EAQSRIFTPFMQVGPSISRTHGGTGIGLSISK LVG MKGEIGF S P
Sbjct: 651 SVEDTGVGIPVEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFSSTPK 710
Query: 700 IGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 759
+GSTFTFTAVF NG + N NNQP + SEF+GMKA+VVD RP RAKVS YH Q
Sbjct: 711 VGSTFTFTAVFSNGMQPAERKND---NNQP--IFSEFRGMKAVVVDHRPARAKVSWYHFQ 765
Query: 760 RLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819
RLGI+VEVV Q L + G+ +NMIL+EQE+W ++ F+ L+K K
Sbjct: 766 RLGIRVEVVPRVEQALHYLKIGTTTVNMILIEQEIWNREADD---FIKKLQKDPLFLSPK 822
Query: 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS 879
L LLANS+ SS + G+ P VI+KPLR+SMLAA+LQR +G+G + ++ P++
Sbjct: 823 LILLANSVESSISEALCTGIDPPIVIVKPLRASMLAATLQRGLGIGIREPPQHKGPPALI 882
Query: 880 LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939
LR+LLLGRKILIVDDNNVNL+VAA LK+YGA VVC E G KA LL PPH+FDACFMDI
Sbjct: 883 LRNLLLGRKILIVDDNNVNLRVAAGALKKYGADVVCAESGIKAISLLKPPHEFDACFMDI 942
Query: 940 QMPEMDGYE 948
QMPEMDG+E
Sbjct: 943 QMPEMDGFE 951
>gi|116109372|gb|ABJ74170.1| histidine kinase 1 [Lupinus albus]
Length = 1043
Score = 1303 bits (3372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 670/973 (68%), Positives = 772/973 (79%), Gaps = 30/973 (3%)
Query: 1 MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVF-KMWLNCWER 59
M LL+ GF LKV HLL + CC ++S + + F++ + DT G+ KMWL WE+
Sbjct: 1 MILLYEVGFVLKVRHLLLVQCCLLLSFLFLIWFISRGTMDTNMSFLGDGGGKMWLKWWEK 60
Query: 60 ISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREAL 119
I G + IH YYQ IG +V+ W+K+ + WL+ T++SL IF MS QATEKRRE L
Sbjct: 61 IRG--FGIHQHYYQYIGCTKVKRAMWKKLFVAWLVGLTMLSLCIFCCMSFQATEKRRETL 118
Query: 120 GSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLT 179
SMCDERARML DQFNVSMNH+QA+SILIST HH +PSAIDQ TF RYTERTAFER L
Sbjct: 119 ASMCDERARMLHDQFNVSMNHIQALSILISTLHHATSPSAIDQRTFARYTERTAFER-LL 177
Query: 180 SGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIF 232
V + SERE+FEKQQGWTIKRMDT E VHKD EPS I+EEYAPVIF
Sbjct: 178 QVVCICCKGTPSEREQFEKQQGWTIKRMDTVEEKQVHKDDYDPEKLEPSHIQEEYAPVIF 237
Query: 233 AQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELP 292
AQDT+SHVIS+D LSGK DRENV+RAR SGKGVLTAPFRLLKTNRLGVILTFAVY R+LP
Sbjct: 238 AQDTLSHVISVDTLSGKGDRENVVRARESGKGVLTAPFRLLKTNRLGVILTFAVYSRDLP 297
Query: 293 SNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNV 352
SNATPNERI+AT+GYLGG+FD+ESLVEKLL QLASKQT+ VNVYDITN +H I MY SNV
Sbjct: 298 SNATPNERIQATNGYLGGVFDVESLVEKLLQQLASKQTVIVNVYDITNHTHHIPMYSSNV 357
Query: 353 SDDGLWLVSTLNFGDPFRKHEMRCR-----------------FKQKAPWPLLAISTSIGI 395
D + VSTLNFGDPFRKHEM CR FKQK P P L+I+TSIGI
Sbjct: 358 LGDTFYHVSTLNFGDPFRKHEMYCRKSNAAKGACIFILLQNRFKQKPPRPWLSITTSIGI 417
Query: 396 LVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGV 455
LVIA LVGHIF ATVNRIAKVE+D M ELKK+AEAADVAKSQFLATVSHEIRTPMNGV
Sbjct: 418 LVIALLVGHIFYATVNRIAKVEDDCREMRELKKRAEAADVAKSQFLATVSHEIRTPMNGV 477
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
LGML MLMDT+LDVTQQ++VRTAQ SGKAL+SLINEVLDQAK+E+GKLELEAV F+LRAI
Sbjct: 478 LGMLHMLMDTDLDVTQQEFVRTAQVSGKALMSLINEVLDQAKIEAGKLELEAVLFDLRAI 537
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
LDDVLSLFS KSQ+KGVEL VY+SD+VPE LIGDPGRFRQI TNLMGNSIKFT+KGH+FV
Sbjct: 538 LDDVLSLFSEKSQEKGVELGVYVSDQVPELLIGDPGRFRQITTNLMGNSIKFTDKGHVFV 597
Query: 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 635
TV+LVEEVV S +V+ E S+S+NTLSG+PVAD SW+GFK F+Q+G F SSS DLI
Sbjct: 598 TVHLVEEVVYSTKVDKE-STSENTLSGFPVADSRRSWEGFKAFSQEGPLGSFSSSSGDLI 656
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
NLIVSVEDTG+GIPLEAQ IFTPFMQVGPSISR HGGTGIGLSISK LV M GEIGFV
Sbjct: 657 NLIVSVEDTGEGIPLEAQPHIFTPFMQVGPSISRKHGGTGIGLSISKCLVHLMSGEIGFV 716
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSR 755
SIP IGSTFTFTA+F NG +SNE +QQ+ NQP+ SSEF+GM A+++D RP+RAKVSR
Sbjct: 717 SIPKIGSTFTFTAIFTNGLPSSNECKTQQIINQPHPASSEFKGMTAMIIDHRPVRAKVSR 776
Query: 756 YHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815
YHIQRLGI VE+VSD Q LS +A+ + +INMIL+EQEVW++D+ +S+ FV+N+ K+
Sbjct: 777 YHIQRLGIHVEMVSDLNQGLSNVANANIVINMILIEQEVWDRDSGMSSHFVDNICKIVHV 836
Query: 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 875
K+F+L S + SRA+ V P+VI KPLR+SMLAASLQR+MG NKG RN +L
Sbjct: 837 VPPKMFILVKS-TRSRASAVISSVHDPTVITKPLRASMLAASLQRSMGFQNKGTHRNSDL 895
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
PS+SLRHLL GR+ILIVDDN+VN VAAA LK+YGA VVCV GK+A L PPHQFDAC
Sbjct: 896 PSLSLRHLLRGRRILIVDDNSVNRMVAAAALKKYGAEVVCVSSGKEAISSLKPPHQFDAC 955
Query: 936 FMDIQMPEMDGYE 948
FMDIQMPE+DG+E
Sbjct: 956 FMDIQMPEIDGFE 968
>gi|9802528|gb|AAF99730.1|AC004557_9 F17L21.11 [Arabidopsis thaliana]
Length = 1092
Score = 1299 bits (3362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 679/1001 (67%), Positives = 767/1001 (76%), Gaps = 71/1001 (7%)
Query: 1 MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEV----------- 49
MSL HV GFG+K+GHL WMLCCW VS F++ +D L G V
Sbjct: 1 MSLFHVLGFGVKIGHLFWMLCCWFVS-----WFVDNGIEDKSGLLVGSVGDLEKTKMTTL 55
Query: 50 ---FKMWLNCWERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWY 106
KMW W +IS + I YQ +GS + + WWRK+++ W++FW LVS+W FWY
Sbjct: 56 KKKNKMWF--WNKISSSGLKIPSFSYQFLGSVKFNKAWWRKLVVVWVVFWVLVSIWTFWY 113
Query: 107 MSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFT 166
SSQA EKR+E L SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGK PSAIDQ TF+
Sbjct: 114 FSSQAMEKRKETLASMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKIPSAIDQRTFS 173
Query: 167 RYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------E 219
YT+RT+FERPLTSGVAYA+RVL SEREEFE+QQGWTI++M + E NPVHKD E
Sbjct: 174 EYTDRTSFERPLTSGVAYAMRVLHSEREEFERQQGWTIRKMYSLEQNPVHKDDYDLEALE 233
Query: 220 PSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLG 279
PSP++EEYAPVIFAQDTVSHV+SLDMLSGKEDRENVLRAR+SGKGVLTAPF L+KTNRLG
Sbjct: 234 PSPVQEEYAPVIFAQDTVSHVVSLDMLSGKEDRENVLRARSSGKGVLTAPFPLIKTNRLG 293
Query: 280 VILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDIT 339
VILTFAVYKR+LPSNATP ERIEAT+GYLGG+FDIESLVE LL QLASKQTI VNVYDIT
Sbjct: 294 VILTFAVYKRDLPSNATPKERIEATNGYLGGVFDIESLVENLLQQLASKQTILVNVYDIT 353
Query: 340 NLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCR---------------------- 377
N S PISMYG+NVS DGL VS L FGDP RKHEMRCR
Sbjct: 354 NHSQPISMYGTNVSADGLERVSPLIFGDPLRKHEMRCRYLQLAHTYVCNFFLFARIQVLT 413
Query: 378 ----------FKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELK 427
FKQK PWP+L++ TS GILVIA LV HI ATV+RI KVEED M +LK
Sbjct: 414 FCCELLPLCRFKQKPPWPVLSMVTSFGILVIALLVAHIIHATVSRIHKVEEDCDKMKQLK 473
Query: 428 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 487
KKAEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELDVTQQDYVRTAQASGKALVS
Sbjct: 474 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTELDVTQQDYVRTAQASGKALVS 533
Query: 488 LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 547
LINEVLDQAK+ESGKLELE V F+LR ILDDVLSLFS KSQ KGVELAVYISDRVP+ LI
Sbjct: 534 LINEVLDQAKIESGKLELEEVRFDLRGILDDVLSLFSSKSQQKGVELAVYISDRVPDMLI 593
Query: 548 GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 607
GDPGRFRQI+TNLMGNSIKFTEKGHIFVTV+LV+E+ +SI+ ET SS ++TLSG PVAD
Sbjct: 594 GDPGRFRQILTNLMGNSIKFTEKGHIFVTVHLVDELFESIDGETA-SSPESTLSGLPVAD 652
Query: 608 RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667
R SW+ FK F+ +G S F+ S D INLIVSVEDTG GIP+EAQSRIFTPFMQVGPSI
Sbjct: 653 RQRSWENFKAFSSNGHRS-FEPSPPD-INLIVSVEDTGVGIPVEAQSRIFTPFMQVGPSI 710
Query: 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 727
SRTHGGTGIGLSISK LVG MKGEIGF S P +GSTFTFTAVF NG + N NN
Sbjct: 711 SRTHGGTGIGLSISKCLVGLMKGEIGFSSTPKVGSTFTFTAVFSNGMQPAERKND---NN 767
Query: 728 QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINM 787
QP + SEF+GMKA+VVD RP RAKVS YH QRLGI+VEVV Q L + G+ +NM
Sbjct: 768 QP--IFSEFRGMKAVVVDHRPARAKVSWYHFQRLGIRVEVVPRVEQALHYLKIGTTTVNM 825
Query: 788 ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMK 847
IL+EQE+W ++ F+ L+K KL LLANS+ SS + G+ P VI+K
Sbjct: 826 ILIEQEIWNREADD---FIKKLQKDPLFLSPKLILLANSVESSISEALCTGIDPPIVIVK 882
Query: 848 PLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLK 907
PLR+SMLAA+LQR +G+G + ++ P++ LR+LLLGRKILIVDDNNVNL+VAA LK
Sbjct: 883 PLRASMLAATLQRGLGIGIREPPQHKGPPALILRNLLLGRKILIVDDNNVNLRVAAGALK 942
Query: 908 RYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+YGA VVC E G KA LL PPH+FDACFMDIQMPEMDG+E
Sbjct: 943 KYGADVVCAESGIKAISLLKPPHEFDACFMDIQMPEMDGFE 983
>gi|89892466|gb|ABD79028.1| histidine kinase SHK278 [Striga asiatica]
Length = 1002
Score = 1211 bits (3134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 643/958 (67%), Positives = 727/958 (75%), Gaps = 54/958 (5%)
Query: 1 MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERI 60
M+LL + GFGLKVGHLL +LCCW +S+IS+N N + TK+ L G+ + W R+
Sbjct: 1 MNLLRIIGFGLKVGHLLLLLCCWFLSIISLNWLSNERAMITKSGLPGDEGQAWKKLLNRV 60
Query: 61 SGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALG 120
S IHH Y Q GS+R + WWRK LI WL +VSL FWYMSSQA EKR+E L
Sbjct: 61 SDCVSKIHHHYSQYFGSRREKNNWWRKFLIGWLAMGIIVSLSAFWYMSSQANEKRKETLA 120
Query: 121 SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTS 180
SMCDERARMLQDQFNVSMNH+QAMS++IS FHHGKNPSAIDQ TF RYTERT+FERPLTS
Sbjct: 121 SMCDERARMLQDQFNVSMNHIQAMSVMISIFHHGKNPSAIDQSTFARYTERTSFERPLTS 180
Query: 181 GVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD-------EPSPIEEEYAPVIFA 233
GVAYAVRVL SERE+FE QQGWTIKRMD E NPVH D EPS ++EEYAPVIFA
Sbjct: 181 GVAYAVRVLHSEREQFEAQQGWTIKRMDKIEKNPVHDDKYNQADLEPSLVQEEYAPVIFA 240
Query: 234 QDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPS 293
Q+TV+HVIS+DMLSGKEDRENVLRAR SGKGVLTAPFRLLKTNRLGVILTFAVYKRELP
Sbjct: 241 QETVAHVISVDMLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRELPP 300
Query: 294 NATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVS 353
+A ++RI+ T G G E LHQLASKQTI VNVYD+TN + PISMYGSN S
Sbjct: 301 DAKLSDRIQETAGVACG--------ENSLHQLASKQTILVNVYDMTNSTDPISMYGSNPS 352
Query: 354 DDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRI 413
DGL VS+LNFGDPFRKHEM CRFKQK PWPL AI TS+GILVI LV I ATVNRI
Sbjct: 353 SDGLHRVSSLNFGDPFRKHEMHCRFKQKQPWPLAAIFTSVGILVIDMLVAQIIYATVNRI 412
Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
AKVE+DYH MMELK++AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT LD TQQD
Sbjct: 413 AKVEDDYHQMMELKRRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTRLDETQQD 472
Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
YVRTA+ SGKALVSLINEVLDQAK+ESGKLELEAVSF+LRAILDDVLSLFSGKSQDK VE
Sbjct: 473 YVRTARESGKALVSLINEVLDQAKIESGKLELEAVSFDLRAILDDVLSLFSGKSQDKKVE 532
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
LAVY+S +VP TLIGDPGRFRQI+TNL+GNSIKFT+KGHIFVTVYLVEEV +E E E
Sbjct: 533 LAVYVSSKVPSTLIGDPGRFRQIVTNLVGNSIKFTDKGHIFVTVYLVEEV---METEAET 589
Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
SS LSG PV DR SW F+ F+QD +T P SS D +N++VSVEDTGQGIP+EAQ
Sbjct: 590 GSS---LSGLPVVDRRRSWSRFRVFSQDNNT-PLAGSSPDQVNVMVSVEDTGQGIPVEAQ 645
Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
SR+F PFMQVGPSI+RTHGGTGIGLSISK LV MKGEIG S P +GSTFTFTAVF
Sbjct: 646 SRVFNPFMQVGPSITRTHGGTGIGLSISKCLVQLMKGEIGLASTPQVGSTFTFTAVF--- 702
Query: 714 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
QQ QPN SSEF G +AL+VD P+RAKVSRYHIQRLGIQVEVV +
Sbjct: 703 ----TAEQQQQQQQQPN--SSEFHGTRALLVDSNPVRAKVSRYHIQRLGIQVEVVPEVGP 756
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG-FQSKLFLLANSISSSRA 832
L + K + ++ VE+E+WE+ N+ +LG G +Q K+ +L+NS
Sbjct: 757 GLKK-----KPVQIVFVEEEMWER----------NVEELGKGSWQPKILILSNS-----P 796
Query: 833 NTSTDGVSIPSVIMKPLRSSMLAASLQRAMG--VGNKGNIRNWELPSMSLRHLLLGRKIL 890
V +V++KPLR SM+ A+LQRAMG GN+G SL LL GR+IL
Sbjct: 797 GIGPPPVPAVAVVVKPLRVSMVGATLQRAMGGLRGNRGTQDLLHKKLSSLSGLLQGRRIL 856
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+VDDN VNL+VAA LK+YGA VV ERGK+A LL PPH F ACFMDIQMPEMDG+E
Sbjct: 857 VVDDNRVNLRVAAGCLKKYGADVVHAERGKEAISLLTPPHLFHACFMDIQMPEMDGFE 914
>gi|444737612|emb|CCL97997.1| histidine kinase 2, putative, expressed [Musa balbisiana]
Length = 999
Score = 1209 bits (3129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/944 (65%), Positives = 736/944 (77%), Gaps = 34/944 (3%)
Query: 15 HLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERISGNSY---YIHHLY 71
HL +C + I MN F++ + + KT + +WL ++ S + +HL+
Sbjct: 3 HLYQAVC---IGNIPMNWFIDAQIMEQKTGYLSDRSNLWLELLKKFSIKDWKNNLCNHLF 59
Query: 72 YQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQ 131
GSK+VR TWWRK+L W++ W L SLWIFW+M+SQA EKRRE L SMCDERARMLQ
Sbjct: 60 ----GSKKVRGTWWRKLLFLWIIGWFLGSLWIFWFMNSQAVEKRREMLASMCDERARMLQ 115
Query: 132 DQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRS 191
DQFNVSMNH+QA++ILISTFHH K+PSAIDQ+TF RY ERTAFERPLTSGVAYAV+VLRS
Sbjct: 116 DQFNVSMNHLQALAILISTFHHAKDPSAIDQITFARYAERTAFERPLTSGVAYAVKVLRS 175
Query: 192 EREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIE--EEYAPVIFAQDTVSHVISLDMLSGK 249
ERE+FEKQQ W IKRMD+ E P ++E + +E +EYAPVIFAQDT HVIS DML+GK
Sbjct: 176 EREQFEKQQRWKIKRMDSTEQPPA-REEDADLENRDEYAPVIFAQDTYKHVISFDMLTGK 234
Query: 250 EDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLG 309
EDREN+LRAR SGKGVLTAPFRLLK+ RLGVILT+AVYK EL S ATP ERI+A GYLG
Sbjct: 235 EDRENILRARESGKGVLTAPFRLLKSRRLGVILTYAVYKSELTSKATPAERIQAAIGYLG 294
Query: 310 GIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPF 369
GIFD+E+LV+KLLHQLA K ++ VNVYD TN PI MYGSN+++ GL+ +STLNFGDP
Sbjct: 295 GIFDVEALVDKLLHQLACKHSMMVNVYDKTNPDEPIIMYGSNMTNVGLYHISTLNFGDPI 354
Query: 370 RKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKK 429
RKHEM CRFKQK+P P LAI+TSIG LVIA LVG+IF ATV+RIAKVE+DY MMELKK+
Sbjct: 355 RKHEMHCRFKQKSPLPWLAITTSIGTLVIALLVGYIFHATVSRIAKVEDDYRQMMELKKR 414
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489
AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD+TQ+DYVRTAQASGKALVSLI
Sbjct: 415 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDITQEDYVRTAQASGKALVSLI 474
Query: 490 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 549
NEVLDQAK+ESGKLELEAV F+LRA+LDD+LSLF GK+Q+KG+ELAVY+SD+VP+ L+GD
Sbjct: 475 NEVLDQAKIESGKLELEAVPFDLRAVLDDILSLFYGKAQEKGLELAVYVSDQVPDVLVGD 534
Query: 550 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 609
GR RQIITNLMGNSIKFTE+GHI++TV++ EEV++S++ E E+ S+ +TL G+PVA+R
Sbjct: 535 HGRIRQIITNLMGNSIKFTERGHIYLTVHIFEEVLNSLDKEIEVHST-DTLCGFPVANRR 593
Query: 610 HSWKGFKTFNQD--GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667
SW+ FK F + S S+S++ INLI+SVEDTG GIPLEAQSR+FTPFMQVGPSI
Sbjct: 594 RSWESFKNFKLELPASDPSLLSTSSNHINLIISVEDTGVGIPLEAQSRVFTPFMQVGPSI 653
Query: 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 727
SR HGGTGIGLSISK LVG MKGEIGFVS P IGSTFTFT V + SNE+
Sbjct: 654 SRIHGGTGIGLSISKCLVGLMKGEIGFVSQPQIGSTFTFTVVLTRACTNSNEYK------ 707
Query: 728 QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINM 787
SSEF GM ALVVD RP RAKV++YH+QRLG+ + D Q LS++ SG+ INM
Sbjct: 708 -----SSEFHGMIALVVDHRPARAKVTKYHLQRLGVNAILEIDPNQVLSRLTSGTSTINM 762
Query: 788 ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ---SKLFLLANSISSSRANTSTDGVSIPSV 844
+LVE+E W KD+S+ ++ L+ G Q K+ LLAN SS NTS+ I ++
Sbjct: 763 VLVEKETWSKDSSIWPFIISKLK----GNQLDIPKILLLANPTSSVNNNTSSSMEYISTI 818
Query: 845 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAA 904
I KPLR+SML SL+RAMG G+ + RN LP +SLR LL ++IL+VDDN VNL+VA
Sbjct: 819 ITKPLRASMLQVSLRRAMGCGDGEHSRNGRLPQLSLRGLLHEKQILVVDDNIVNLRVAYG 878
Query: 905 GLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
LK+YGA V C E GKKA +L PPH+FDACFMDIQMPEMDG+E
Sbjct: 879 ALKKYGAEVTCAESGKKAIGMLKPPHKFDACFMDIQMPEMDGFE 922
>gi|413951477|gb|AFW84126.1| putative histidine kinase family protein [Zea mays]
Length = 1007
Score = 1112 bits (2875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/904 (62%), Positives = 687/904 (75%), Gaps = 26/904 (2%)
Query: 54 LNCWERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATE 113
L E++S + H + R +W ++ W+LFW L++ I +MS+QA
Sbjct: 38 LRLPEKLSARALRTHLFTNYRMRKVRDSSSW---LIPLWVLFWVLLASVICLWMSNQAVA 94
Query: 114 KRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTA 173
KRRE+L SMCDERARMLQDQFNVS+NH+QA++IL+STFHH K PSAIDQ TF RY ERTA
Sbjct: 95 KRRESLASMCDERARMLQDQFNVSVNHLQALAILVSTFHHSKTPSAIDQTTFARYAERTA 154
Query: 174 FERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFE-----HNPVHKDEPSPIE--EE 226
FERPLTSGVAY VRV +ERE+FE+QQGW+IK+M + + P + ++ E EE
Sbjct: 155 FERPLTSGVAYGVRVTHAEREQFERQQGWSIKKMYSSKTKKQSQGPGNAEDAEVREPAEE 214
Query: 227 YAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAV 286
YAPVIFAQD HVIS D+LSG +DR+NVLRAR SGKGVLTAPF+LL NRLGVI T+AV
Sbjct: 215 YAPVIFAQDAYKHVISFDLLSGADDRDNVLRARESGKGVLTAPFKLL-NNRLGVISTYAV 273
Query: 287 YKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPIS 346
YK ELP NA P ERI+A GYLGGIFDIE+LV+KLLHQLA KQ+I VNVYD TN IS
Sbjct: 274 YKYELPPNARPQERIQAAIGYLGGIFDIEALVDKLLHQLAGKQSIMVNVYDTTN-DRRIS 332
Query: 347 MYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIF 406
MYGSN + G+ VSTLNFGDP RKHEM CRF Q PWP +AI+TSIG LVIA L+G+I
Sbjct: 333 MYGSNDTGSGMCQVSTLNFGDPSRKHEMHCRFIQSPPWPWMAITTSIGTLVIALLIGYII 392
Query: 407 QATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE 466
AT RIA+VE+D+ M LKK+AE AD+AKSQFLATVSHEIRTPMNGVLGML MLMDT+
Sbjct: 393 YATAKRIARVEDDFQEMSVLKKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTD 452
Query: 467 LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGK 526
LD TQQDYVRTAQASGKALVSLINEVLDQAK+ESGKLELEAV F+LR + DD+LSLF GK
Sbjct: 453 LDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEAVPFDLRTVCDDILSLFCGK 512
Query: 527 SQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 586
+Q+KG+ELAV++SD+VP+ LIGDPGR RQIITNL+GNSIKFTEKGHI++TV++VEE+++
Sbjct: 513 AQEKGLELAVFVSDQVPQALIGDPGRIRQIITNLVGNSIKFTEKGHIYLTVHVVEEIMNC 572
Query: 587 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS--PFKSSSADLINLIVSVEDT 644
+EVET + S NTLSGYPVA+R SW+ F+ F+++ ++S PF ++D I+LI+SVEDT
Sbjct: 573 LEVETG-TQSANTLSGYPVANRKRSWENFRVFSRELNSSEMPFAPIASDSISLIISVEDT 631
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GIP +AQSR+FTPFMQVGPSI+R HGGTGIGLSISK LVG M+GEIGF S P +GSTF
Sbjct: 632 GVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGEIGFASKPQVGSTF 691
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 764
TFTAV S+ NE+ SSEF+G+ ALVVD RP+RAKV+RYH+QRLG+Q
Sbjct: 692 TFTAVLTRAHSSRNENK-----------SSEFKGINALVVDHRPVRAKVTRYHLQRLGVQ 740
Query: 765 VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLA 824
E+ +D Q +S+I GS+I ++L+++E W K++ L V LR +KLFLL
Sbjct: 741 TELTTDLDQYISKINCGSQIAKLVLIDKETWLKESHSMPLLVTKLRNKDQPDSTKLFLLE 800
Query: 825 NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL 884
N S++++N+ +VIMKPLR+SML SL RA+G +K + RN L + +L LL
Sbjct: 801 NPKSTAKSNSHIFREFNLNVIMKPLRASMLQVSLHRALGGIDKLHCRNGVLGNSTLGSLL 860
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
++IL+VDDN VNLKVAA LK+YGA V C + GKKA L PPH FDACFMDIQMPEM
Sbjct: 861 HKKRILVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITQLKPPHSFDACFMDIQMPEM 920
Query: 945 DGYE 948
DG+E
Sbjct: 921 DGFE 924
>gi|222619783|gb|EEE55915.1| hypothetical protein OsJ_04593 [Oryza sativa Japonica Group]
Length = 1001
Score = 1106 bits (2861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/864 (63%), Positives = 671/864 (77%), Gaps = 27/864 (3%)
Query: 97 TLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKN 156
+L S ++F +M++Q+ +KRR++L SMCDERARMLQDQFNVSMNH+QA++IL+STFHH K
Sbjct: 70 SLGSFYLFLFMNAQSLDKRRDSLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHSKT 129
Query: 157 PSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVH 216
PSAIDQMTF RY ERTAFERPLTSGVAYAVRV ERE+FE+QQGW IK+M + +
Sbjct: 130 PSAIDQMTFARYAERTAFERPLTSGVAYAVRVTHGEREQFERQQGWAIKKMYSSSNKKQS 189
Query: 217 KDEPSPIE----------EEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266
P P E EEYAPVIFAQD HVIS DMLSG EDR+N+LRAR SGKGVL
Sbjct: 190 SPGPGPGEAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRDNILRARKSGKGVL 249
Query: 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLA 326
TAPF+LL NRLGVILT+ VYK ELP+ A P+ERI+A GYLGGIFDI++LVEKLL QLA
Sbjct: 250 TAPFKLL-NNRLGVILTYTVYKYELPAYARPHERIQAAIGYLGGIFDIQALVEKLLKQLA 308
Query: 327 SKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPL 386
S+++I VNVYD TN S PISMYG + + G+ VS LNFGDP RKHEM CRF++K PWP
Sbjct: 309 SQESIMVNVYDTTNES-PISMYGDD-TGSGMCHVSVLNFGDPSRKHEMHCRFEKKPPWPW 366
Query: 387 LAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSH 446
LAI++S G LVIA L GHIFQATV+RIAKVE+D+H M ELKK+AE ADVAKSQFLATVSH
Sbjct: 367 LAITSSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSH 426
Query: 447 EIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 506
EIRTPMNGVLGML MLMDT+LD TQQDYVRTAQASGKALVSLINEVLDQAK+ESGKLELE
Sbjct: 427 EIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELE 486
Query: 507 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK 566
V F+LR + DD+LSLF GK+Q+KG+ELAVY+SD+VP+ LIGDPGR RQIITNL+GNSIK
Sbjct: 487 TVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIK 546
Query: 567 FTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD--GST 624
FTE+GHI++TV++VEEV+ +EVET + ++ NTLSGYPVA+R SW+ + FN++ S
Sbjct: 547 FTERGHIYLTVHVVEEVMSCLEVETGIQNT-NTLSGYPVANRRCSWESIRLFNRELHSSE 605
Query: 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 684
F ++D I+L++SVEDTG GIP EAQSR+FTPFMQVGPSI+R HGGTGIGLSISK L
Sbjct: 606 KSFAPIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCL 665
Query: 685 VGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVV 744
VG MKGEIGF S P++GSTFTFTAV N+ SSEF+G+ ALVV
Sbjct: 666 VGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKGNDIK-----------SSEFKGINALVV 714
Query: 745 DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL 804
D RP+RAKV++YH+QRLG++ E+ ++ Q +S++ SGS ++L+++E W K++ + L
Sbjct: 715 DHRPVRAKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTAKLVLIDKETWLKESHCTPL 774
Query: 805 FVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864
VN LR KLFLL +S SS + + T +VIMKPLR+SML SL+RA+G
Sbjct: 775 LVNKLRNNDKPDSPKLFLLGSSASSPKGGSDTSREHNLNVIMKPLRASMLQVSLRRALGG 834
Query: 865 GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATE 924
+K + RN + + +L LL ++I++VDDN VNLKVAA LK+YGA V C + GKKA
Sbjct: 835 VDKVHCRNGVVGNSTLGSLLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAIT 894
Query: 925 LLMPPHQFDACFMDIQMPEMDGYE 948
LL PPH FDACFMDIQMPEMDG+E
Sbjct: 895 LLKPPHNFDACFMDIQMPEMDGFE 918
>gi|125528916|gb|EAY77030.1| hypothetical protein OsI_04985 [Oryza sativa Indica Group]
Length = 1023
Score = 1105 bits (2859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/864 (63%), Positives = 671/864 (77%), Gaps = 27/864 (3%)
Query: 97 TLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKN 156
+L S ++F +M++Q+ +KRR++L SMCDERARMLQDQFNVSMNH+QA++IL+STFHH K
Sbjct: 92 SLGSFYLFLFMNAQSLDKRRDSLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHSKT 151
Query: 157 PSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVH 216
PSAIDQMTF RY ERTAFERPLTSGVAYAVRV ERE+FE+QQGW IK+M + +
Sbjct: 152 PSAIDQMTFARYAERTAFERPLTSGVAYAVRVTHGEREQFERQQGWAIKKMYSSSNKKQS 211
Query: 217 KDEPSPIE----------EEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266
P P + EEYAPVIFAQD HVIS DMLSG EDR+N+LRAR SGKGVL
Sbjct: 212 SPGPGPGDAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRDNILRARKSGKGVL 271
Query: 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLA 326
TAPF+LL NRLGVILT+ VYK ELP+ A P+ERI+A GYLGGIFDI++LVEKLL QLA
Sbjct: 272 TAPFKLL-NNRLGVILTYTVYKYELPAYARPHERIQAAIGYLGGIFDIQALVEKLLKQLA 330
Query: 327 SKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPL 386
S+++I VNVYD TN S PISMYG + + G+ VS LNFGDP RKHEM CRF++K PWP
Sbjct: 331 SQESIMVNVYDTTNES-PISMYGDD-TGSGMCHVSVLNFGDPSRKHEMHCRFEKKPPWPW 388
Query: 387 LAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSH 446
LAI++S G LVIA L GHIFQATV+RIAKVE+D+H M ELKK+AE ADVAKSQFLATVSH
Sbjct: 389 LAITSSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSH 448
Query: 447 EIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 506
EIRTPMNGVLGML MLMDT+LD TQQDYVRTAQASGKALVSLINEVLDQAK+ESGKLELE
Sbjct: 449 EIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELE 508
Query: 507 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK 566
V F+LR + DD+LSLF GK+Q+KG+ELAVY+SD+VP+ LIGDPGR RQIITNL+GNSIK
Sbjct: 509 TVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIK 568
Query: 567 FTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD--GST 624
FTE+GHI++TV++VEEV+ +EVET + ++ NTLSGYPVA+R SW+ + FN++ S
Sbjct: 569 FTERGHIYLTVHVVEEVMSCLEVETGIQNT-NTLSGYPVANRRRSWESIRLFNRELHSSE 627
Query: 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 684
F ++D I+L++SVEDTG GIP EAQSR+FTPFMQVGPSI+R HGGTGIGLSISK L
Sbjct: 628 KSFAPIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCL 687
Query: 685 VGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVV 744
VG MKGEIGF S P++GSTFTFTAV N+ SSEF+G+ ALVV
Sbjct: 688 VGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKGNDIK-----------SSEFKGINALVV 736
Query: 745 DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL 804
D RP+RAKV++YH+QRLG++ E+ ++ Q +S++ SGS ++L+++E W K++ + L
Sbjct: 737 DHRPVRAKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTAKLVLIDKETWLKESHCTPL 796
Query: 805 FVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864
VN LR KLFLL +S SS + + T +VIMKPLR+SML SL+RA+G
Sbjct: 797 LVNKLRNNDKPDSPKLFLLGSSASSPKGGSDTSREHNLNVIMKPLRASMLQVSLRRALGG 856
Query: 865 GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATE 924
+K + RN + + +L LL ++I++VDDN VNLKVAA LK+YGA V C + GKKA
Sbjct: 857 VDKVHCRNGVVGNSTLGSLLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAIT 916
Query: 925 LLMPPHQFDACFMDIQMPEMDGYE 948
LL PPH FDACFMDIQMPEMDG+E
Sbjct: 917 LLKPPHNFDACFMDIQMPEMDGFE 940
>gi|118790678|tpd|FAA00248.1| TPA: histidine kinase [Oryza sativa Japonica Group]
Length = 1023
Score = 1104 bits (2855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/864 (63%), Positives = 671/864 (77%), Gaps = 27/864 (3%)
Query: 97 TLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKN 156
+L S ++F +M++Q+ +KRR++L SMCDERARMLQDQFNVSMNH+QA++IL+STFHH K
Sbjct: 92 SLGSFYLFLFMNAQSLDKRRDSLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHSKT 151
Query: 157 PSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVH 216
PSAIDQMTF RY ERTAFERPLTSGVAYAVRV ERE+FE+QQGW IK+M + +
Sbjct: 152 PSAIDQMTFARYAERTAFERPLTSGVAYAVRVTHGEREQFERQQGWAIKKMYSSSNKKQS 211
Query: 217 KDEPSPIE----------EEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266
P P + EEYAPVIFAQD HVIS DMLSG EDR+N+LRAR SGKGVL
Sbjct: 212 SPGPGPGDAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRDNILRARKSGKGVL 271
Query: 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLA 326
TAPF+LL NRLGVILT+ VYK ELP+ A P+ERI+A GYLGGIFDI++LVEKLL QLA
Sbjct: 272 TAPFKLL-NNRLGVILTYTVYKYELPAYARPHERIQAAIGYLGGIFDIQALVEKLLKQLA 330
Query: 327 SKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPL 386
S+++I VNVYD TN S PISMYG + + G+ VS LNFGDP RKHEM CRF++K PWP
Sbjct: 331 SQESIMVNVYDTTNES-PISMYGDD-TGSGMCHVSVLNFGDPSRKHEMHCRFEKKPPWPW 388
Query: 387 LAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSH 446
LAI++S G LVIA L GHIFQATV+RIAKVE+D+H M ELKK+AE ADVAKSQFLATVSH
Sbjct: 389 LAITSSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSH 448
Query: 447 EIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 506
EIRTPMNGVLGML MLMDT+LD TQQDYVRTAQASGKALVSLINEVLDQAK+ESGKLELE
Sbjct: 449 EIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELE 508
Query: 507 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK 566
V F+LR + DD+LSLF GK+Q+KG+ELAVY+SD+VP+ LIGDPGR RQIITNL+GNSIK
Sbjct: 509 TVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIK 568
Query: 567 FTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD--GST 624
FTE+GHI++TV++VEEV+ +EVET + ++ NTLSGYPVA+R SW+ + FN++ S
Sbjct: 569 FTERGHIYLTVHVVEEVMSCLEVETGIQNT-NTLSGYPVANRRCSWESIRLFNRELHSSE 627
Query: 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 684
F ++D I+L++SVEDTG GIP EAQSR+FTPFMQVGPSI+R HGGTGIGLSISK L
Sbjct: 628 KSFAPIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCL 687
Query: 685 VGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVV 744
VG MKGEIGF S P++GSTFTFTAV N+ SSEF+G+ ALVV
Sbjct: 688 VGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKGNDIK-----------SSEFKGINALVV 736
Query: 745 DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL 804
D RP+RAKV++YH+QRLG++ E+ ++ Q +S++ SGS ++L+++E W K++ + L
Sbjct: 737 DHRPVRAKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTAKLVLIDKETWLKESHCTPL 796
Query: 805 FVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864
VN LR KLFLL +S SS + + T +VIMKPLR+SML SL+RA+G
Sbjct: 797 LVNKLRNNDKPDSPKLFLLGSSASSPKGGSDTSREHNLNVIMKPLRASMLQVSLRRALGG 856
Query: 865 GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATE 924
+K + RN + + +L LL ++I++VDDN VNLKVAA LK+YGA V C + GKKA
Sbjct: 857 VDKVHCRNGVVGNSTLGSLLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAIT 916
Query: 925 LLMPPHQFDACFMDIQMPEMDGYE 948
LL PPH FDACFMDIQMPEMDG+E
Sbjct: 917 LLKPPHNFDACFMDIQMPEMDGFE 940
>gi|82466315|gb|ABB76249.1| hybrid type histidine kinase isoform a [Oryza sativa Indica Group]
Length = 1023
Score = 1103 bits (2853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/864 (63%), Positives = 671/864 (77%), Gaps = 27/864 (3%)
Query: 97 TLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKN 156
+L S ++F +M++Q+ +KRR++L SMCDERARMLQDQFNVSMNH+QA++IL+STFHH K
Sbjct: 92 SLGSFYLFLFMNAQSLDKRRDSLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHSKT 151
Query: 157 PSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVH 216
PSAIDQMTF RY ERTAFERPLTSGVAYAVRV E+E+FE+QQGW IK+M + +
Sbjct: 152 PSAIDQMTFARYAERTAFERPLTSGVAYAVRVTHGEQEQFERQQGWAIKKMYSSSNKKQS 211
Query: 217 KDEPSPIE----------EEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266
P P + EEYAPVIFAQD HVIS DMLSG EDR+N+LRAR SGKGVL
Sbjct: 212 SPGPGPGDAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRDNILRARKSGKGVL 271
Query: 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLA 326
TAPF+LL NRLGVILT+ VYK ELP+ A P+ERI+A GYLGGIFDI++LVEKLL QLA
Sbjct: 272 TAPFKLL-NNRLGVILTYTVYKYELPAYARPHERIQAAIGYLGGIFDIQALVEKLLKQLA 330
Query: 327 SKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPL 386
S+++I VNVYD TN S PISMYG + + G+ VS LNFGDP RKHEM CRF++K PWP
Sbjct: 331 SQESIMVNVYDTTNES-PISMYGDD-TGSGMCHVSVLNFGDPSRKHEMHCRFEKKPPWPW 388
Query: 387 LAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSH 446
LAI++S G LVIA L GHIFQATV+RIAKVE+D+H M ELKK+AE ADVAKSQFLATVSH
Sbjct: 389 LAITSSFGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSH 448
Query: 447 EIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 506
EIRTPMNGVLGML MLMDT+LD TQQDYVRTAQASGKALVSLINEVLDQAK+ESGKLELE
Sbjct: 449 EIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELE 508
Query: 507 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK 566
V F+LR + DD+LSLF GK+Q+KG+ELAVY+SD+VP+ LIGDPGR RQIITNL+GNSIK
Sbjct: 509 TVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRVRQIITNLIGNSIK 568
Query: 567 FTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD--GST 624
FTE+GHI++TV++VEEV+ +EVET + ++ NTLSGYPVA+R SW+ + FN++ S
Sbjct: 569 FTERGHIYLTVHVVEEVMSCLEVETGIQNT-NTLSGYPVANRRRSWESIRLFNRELHSSE 627
Query: 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 684
F ++D I+L++SVEDTG GIP EAQSR+FTPFMQVGPSI+R HGGTGIGLSISK L
Sbjct: 628 KSFAPIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCL 687
Query: 685 VGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVV 744
VG MKGEIGF S P++GSTFTFTAV N+ SSEF+G+ ALVV
Sbjct: 688 VGLMKGEIGFASKPHVGSTFTFTAVLMRAHCKGNDIK-----------SSEFKGINALVV 736
Query: 745 DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL 804
D RP+RAKV++YH+QRLG++ E+ ++ Q +S++ SGS ++L+++E W K++ + L
Sbjct: 737 DHRPVRAKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTAKLVLIDKETWLKESHCTPL 796
Query: 805 FVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864
VN LR KLFLL +S SS + + T +VIMKPLR+SML SL+RA+G
Sbjct: 797 LVNKLRNNDKPDSPKLFLLGSSASSPKGGSDTSREHNLNVIMKPLRASMLQVSLRRALGG 856
Query: 865 GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATE 924
+K + RN + + +L LL ++I++VDDN VNLKVAA LK+YGA V C + GKKA
Sbjct: 857 VDKVHCRNGVVGNSTLGSLLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAIT 916
Query: 925 LLMPPHQFDACFMDIQMPEMDGYE 948
LL PPH FDACFMDIQMPEMDG+E
Sbjct: 917 LLKPPHNFDACFMDIQMPEMDGFE 940
>gi|162461092|ref|NP_001104866.1| histidine kinase2 [Zea mays]
gi|38347686|dbj|BAD01584.1| histidine kinase 2 [Zea mays]
Length = 1007
Score = 1100 bits (2844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/904 (61%), Positives = 682/904 (75%), Gaps = 26/904 (2%)
Query: 54 LNCWERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATE 113
L E++S + H + R +W ++ W+ W LV+ I+ MS QA
Sbjct: 38 LRLPEKLSARTLRTHLFTNYRMRKVRDSSSW---LIPLWVSSWVLVASLIYLCMSYQAVG 94
Query: 114 KRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTA 173
KRRE+L SMCDERARMLQDQFNVSMNH+QA++IL+STFHH K PSAIDQ TF RY ERTA
Sbjct: 95 KRRESLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHSKTPSAIDQKTFARYAERTA 154
Query: 174 FERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFE-----HNPVHKDEPSPIE--EE 226
FERPLTSGVAY VRV +ERE+FE+QQGW+IK+M + + P + ++ E EE
Sbjct: 155 FERPLTSGVAYGVRVTHAEREQFERQQGWSIKKMYSSKTKNQSQGPGNAEDAEVREPAEE 214
Query: 227 YAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAV 286
YAPVIFAQD HVIS D+LSG +DR+NVLRAR SGKGVLTAPF+LL NRLGVI T+AV
Sbjct: 215 YAPVIFAQDAYKHVISFDLLSGADDRDNVLRARESGKGVLTAPFKLL-NNRLGVIFTYAV 273
Query: 287 YKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPIS 346
YK ELP+NA P ERI+A GYLGGIFDIE+LV+KLLHQLA KQ+I VNVYD TN PIS
Sbjct: 274 YKYELPANARPQERIQAAIGYLGGIFDIEALVDKLLHQLAGKQSIMVNVYDTTN-ERPIS 332
Query: 347 MYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIF 406
MYGSN + G+ VSTLNFGDP RKH M CRF Q PWP +AI+TSIG LVIA L+G+I
Sbjct: 333 MYGSNDTGSGMCQVSTLNFGDPSRKHVMHCRFIQSPPWPWMAITTSIGTLVIALLIGYIV 392
Query: 407 QATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE 466
AT RIA+VE+D+ M LKK+AE AD+AKSQFLATVSHEIRTPMNGVLGML MLMDT+
Sbjct: 393 HATAKRIARVEDDFQEMSLLKKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTD 452
Query: 467 LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGK 526
LD TQQDYVRTAQASGK LVSLINEVLDQAK+ESGKLELE V F+LR + DD+LSLF GK
Sbjct: 453 LDTTQQDYVRTAQASGKTLVSLINEVLDQAKIESGKLELEVVPFDLRTVCDDILSLFCGK 512
Query: 527 SQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 586
+Q+KG+ELAV++SD+VP+TLIGDPGR RQIITNL+GNSIKFTEKGHI++TV++VEE++
Sbjct: 513 AQEKGLELAVFVSDQVPQTLIGDPGRIRQIITNLVGNSIKFTEKGHIYLTVHVVEEIMHC 572
Query: 587 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS--PFKSSSADLINLIVSVEDT 644
+EVET + + NTLSGYPVA+R SW+ F+ F+++ ++S PF ++D I+L++SVEDT
Sbjct: 573 LEVETGIQYT-NTLSGYPVANRKRSWENFRLFSRELNSSEMPFAPIASDSISLMISVEDT 631
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GIP +AQSR+FTPFMQVGPSI+R HGGTGIGLSISK LVG MKGEIGF S P +GSTF
Sbjct: 632 GAGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPQVGSTF 691
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 764
TFTAV S+ NE+ SSEF+ + ALVVD RP+RAKV++YH+QRLG+Q
Sbjct: 692 TFTAVLTRVHSSRNENK-----------SSEFKEINALVVDHRPVRAKVTKYHLQRLGVQ 740
Query: 765 VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLA 824
E+ +D Q +S+ GS+I ++L+++E W K++ L V LR +KLFLL
Sbjct: 741 TELTTDLDQYISKNNCGSQIAKLVLIDKETWLKESHSMPLLVTKLRNKDQPDSTKLFLLE 800
Query: 825 NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL 884
N SS ++N+ +VIMKPLR+SML SLQRA+G +K + RN + + +L LL
Sbjct: 801 NPKSSVKSNSHIFREYNLNVIMKPLRASMLQVSLQRALGGIDKLHCRNGVVGNSTLGSLL 860
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
++I++VDDN VNLKVAA LK+YGA V C + GK+A LL PPH FDACFMDIQMPEM
Sbjct: 861 HKKRIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKEAITLLKPPHNFDACFMDIQMPEM 920
Query: 945 DGYE 948
DG+E
Sbjct: 921 DGFE 924
>gi|414878942|tpg|DAA56073.1| TPA: putative histidine kinase family protein [Zea mays]
Length = 1007
Score = 1098 bits (2841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/904 (61%), Positives = 681/904 (75%), Gaps = 26/904 (2%)
Query: 54 LNCWERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATE 113
L E++S + H + R +W ++ W+ W LV+ I+ MS QA
Sbjct: 38 LRLPEKLSARTLRTHLFTNYRMRKVRDSSSW---LIPLWVSSWVLVASLIYLCMSYQAVG 94
Query: 114 KRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTA 173
KRRE+L SMCDERARMLQDQFNVSMNH+QA++IL+STFHH K PSAIDQ TF RY ERTA
Sbjct: 95 KRRESLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHSKTPSAIDQKTFARYAERTA 154
Query: 174 FERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFE-----HNPVHKDEPSPIE--EE 226
FERPLTSGVAY VRV +ERE+FE+QQGW+IK+M + + P + ++ E EE
Sbjct: 155 FERPLTSGVAYGVRVTHAEREQFERQQGWSIKKMYSSKTKNQSQGPGNAEDAEVREPAEE 214
Query: 227 YAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAV 286
YAPVIFAQD HVIS D+LSG +DR+NVLRAR SGKGVLTAPF+LL NRLGVI T+AV
Sbjct: 215 YAPVIFAQDAYKHVISFDLLSGADDRDNVLRARESGKGVLTAPFKLL-NNRLGVIFTYAV 273
Query: 287 YKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPIS 346
YK ELP+NA P ERI+A GYLGGIFDIE+LV+KLLHQLA KQ+I VNVYD TN PIS
Sbjct: 274 YKYELPANARPQERIQAAIGYLGGIFDIEALVDKLLHQLAGKQSIMVNVYDTTN-ERPIS 332
Query: 347 MYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIF 406
MYGSN + G+ VSTLNFGDP RKH M CRF Q PWP +AI+TSIG LVIA L+G+I
Sbjct: 333 MYGSNDTGSGMCQVSTLNFGDPSRKHVMHCRFIQSPPWPWMAITTSIGTLVIALLIGYIV 392
Query: 407 QATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE 466
AT RIA+VE+D+ M LKK+AE AD+AKSQFLATVSHEIRTPMNGVLGML MLMDT+
Sbjct: 393 HATAKRIARVEDDFQEMSLLKKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTD 452
Query: 467 LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGK 526
LD TQQDYVRTAQASGK LVSLINEVLDQAK+ESGKLELE V F+LR + DD+LSLF GK
Sbjct: 453 LDTTQQDYVRTAQASGKTLVSLINEVLDQAKIESGKLELEVVPFDLRTVCDDILSLFCGK 512
Query: 527 SQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 586
+Q+KG+ELAV++SD+VP+TLIGDPGR RQIITNL+GNSIKFTEKGHI++TV++VEE++
Sbjct: 513 AQEKGLELAVFVSDQVPQTLIGDPGRIRQIITNLVGNSIKFTEKGHIYLTVHVVEEIMHC 572
Query: 587 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS--PFKSSSADLINLIVSVEDT 644
+EVET + NTLSGYPVA+R SW+ F+ F+++ ++S PF ++D I+L++SVEDT
Sbjct: 573 LEVETG-TQYTNTLSGYPVANRKRSWENFRLFSRELNSSEMPFAPIASDSISLMISVEDT 631
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GIP +AQSR+FTPFMQVGPSI+R HGGTGIGLSISK LVG MKGEIGF S P +GSTF
Sbjct: 632 GAGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFSSKPQVGSTF 691
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 764
TFTAV S+ NE+ SSEF+ + ALVVD RP+RAKV++YH+QRLG+Q
Sbjct: 692 TFTAVLTRVHSSRNENK-----------SSEFKEINALVVDHRPVRAKVTKYHLQRLGVQ 740
Query: 765 VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLA 824
E+ +D Q +S+ GS+I ++L+++E W K++ L V LR +KLFLL
Sbjct: 741 TELTTDLDQYISKNNCGSQIAKLVLIDKETWLKESHSMPLLVTKLRNKDQPDSTKLFLLE 800
Query: 825 NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL 884
N SS ++N+ +VIMKPLR+SML SLQRA+G +K + RN + + +L LL
Sbjct: 801 NPKSSVKSNSHIFREYNLNVIMKPLRASMLQVSLQRALGGIDKLHCRNGVVGNSTLGSLL 860
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
++I++VDDN VNLKVAA LK+YGA V C + GK+A LL PPH FDACFMDIQMPEM
Sbjct: 861 HKKRIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKEAITLLKPPHNFDACFMDIQMPEM 920
Query: 945 DGYE 948
DG+E
Sbjct: 921 DGFE 924
>gi|357126560|ref|XP_003564955.1| PREDICTED: histidine kinase 3-like [Brachypodium distachyon]
Length = 1019
Score = 1078 bits (2789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/903 (62%), Positives = 684/903 (75%), Gaps = 29/903 (3%)
Query: 58 ERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRRE 117
E++S H+Y +GS+ VRE WWR +L+ W+L WTL S WIF+Y +SQA EKRRE
Sbjct: 51 EKLSSAKTLRSHVYANYLGSRPVRERWWRWLLLLWVLGWTLASCWIFYYENSQAVEKRRE 110
Query: 118 ALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERP 177
+L SMCDERARMLQDQFNVSMNH+QA++IL+STFHH + PSAI+Q TF RY ERTAFERP
Sbjct: 111 SLASMCDERARMLQDQFNVSMNHLQALAILVSTFHHAQTPSAINQATFARYAERTAFERP 170
Query: 178 LTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEH---NPVHKD-------EPSPIEEEY 227
LTSGVAYAVRV ER++FE+QQGW+IK+M + + P D EP+ EEY
Sbjct: 171 LTSGVAYAVRVTHGERDQFERQQGWSIKKMYSSKKKSPGPGPGDAATAEIREPA---EEY 227
Query: 228 APVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVY 287
APVIFAQD HV+S DMLSG +DREN+LRAR SGKGVLTAPF+LL NRLGVI T+ VY
Sbjct: 228 APVIFAQDAYKHVLSFDMLSGDDDRENILRARESGKGVLTAPFKLL-NNRLGVISTYTVY 286
Query: 288 KRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISM 347
K E P+ A P ERI+A GYLGGIFDIE+LV+KLLHQLA KQ+I VNVYD TN PISM
Sbjct: 287 KSEFPAYARPQERIQAAIGYLGGIFDIEALVDKLLHQLAGKQSIMVNVYDTTN-EKPISM 345
Query: 348 YGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQ 407
YGSN + G++ STLNFGDP R+HEM CRF QK P P LAI++S+G LVIA L G+IF
Sbjct: 346 YGSNDTGGGMYHNSTLNFGDPSRRHEMHCRFMQKPPLPWLAITSSLGTLVIALLTGYIFH 405
Query: 408 ATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL 467
ATV+RIAKVE+DY MMELKK+AEAAD+AKSQFLATVSHEIRTPMNGVLGML MLMDT+L
Sbjct: 406 ATVHRIAKVEDDYQNMMELKKRAEAADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDL 465
Query: 468 DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKS 527
D TQQD+VRTAQASGKALVSLINEVLDQAK+ESGKLELEAV F+LR + DD+LSLF GK+
Sbjct: 466 DTTQQDFVRTAQASGKALVSLINEVLDQAKIESGKLELEAVPFDLRIVCDDILSLFCGKA 525
Query: 528 QDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 587
Q+KG+ELAVY+SD+VP+TLIGDPGR RQIITNLM NSIKFTE+GHI++TV++VEEV+ +
Sbjct: 526 QEKGLELAVYVSDQVPQTLIGDPGRMRQIITNLMSNSIKFTERGHIYLTVHVVEEVMGCL 585
Query: 588 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD--GSTSPFKSSSADLINLIVSVEDTG 645
EV+T + NTLSGYPVA+R SW+ F+ F+ D S PF + D I LI+SVEDTG
Sbjct: 586 EVKTG-THYTNTLSGYPVANRRRSWESFRLFDMDLHSSEMPFTPVTPDTIRLIISVEDTG 644
Query: 646 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 705
GIP EAQ RIFTP+MQVGPSI+R HGGTGIGLSISK LV MKGEIGFVS P++GSTF+
Sbjct: 645 AGIPFEAQYRIFTPYMQVGPSIARIHGGTGIGLSISKCLVHLMKGEIGFVSKPHVGSTFS 704
Query: 706 FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 765
FTAV S N +N SS F+G+ ALVVD RP+RAKV++YH+QRLG+Q
Sbjct: 705 FTAVLTRAQSNGN------LNK-----SSGFKGINALVVDHRPVRAKVAKYHLQRLGVQT 753
Query: 766 EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 825
E+ +D Q + ++ G ++LV++E W K++ V+ LR K FLL N
Sbjct: 754 ELTTDVNQIIPKLNCGPLAAKLVLVDKETWLKESHSMPHLVSKLRNKDQADPPKFFLLEN 813
Query: 826 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL 885
SS ++++ +VI KPLR+SML SL++A+G +K + +N + + +L LL
Sbjct: 814 PTSSIKSSSHISSEHNLNVIKKPLRASMLQVSLRQALGGVDKVHCKNGVVGNSTLGSLLH 873
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
++I++VDDN VNLKVAA LK+YGA V C + GKKA L PPH FDACFMDIQMPEMD
Sbjct: 874 KKQIIVVDDNAVNLKVAAGALKKYGAVVTCADSGKKAIAYLSPPHIFDACFMDIQMPEMD 933
Query: 946 GYE 948
G++
Sbjct: 934 GFQ 936
>gi|326487932|dbj|BAJ89805.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1019
Score = 1068 bits (2763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/863 (61%), Positives = 663/863 (76%), Gaps = 18/863 (2%)
Query: 92 WLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTF 151
W++ WTL+ L +F Y +S A EKRR++L SMCDERARMLQDQFNVSMNH+QA++IL++TF
Sbjct: 86 WVVGWTLICLQVFRYSNSGAVEKRRDSLASMCDERARMLQDQFNVSMNHLQALAILVNTF 145
Query: 152 HHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFE 211
HH + PSAI Q TF RY ERTAFERPLTSGVAYAVRV +ER++FE+QQGW+IK+M +
Sbjct: 146 HHSQTPSAITQATFARYAERTAFERPLTSGVAYAVRVTHAERDQFERQQGWSIKKMYSSP 205
Query: 212 HNPVHKD----EPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLT 267
+ D E +EYAPVIFAQD +VIS DMLSG +DREN++RAR SGKGVLT
Sbjct: 206 SSQGPGDAAVAEIRGPADEYAPVIFAQDAYKNVISFDMLSGADDRENIIRARESGKGVLT 265
Query: 268 APFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLAS 327
APF+LL RLGVILT++VYK E P+NA P ERI+A GYLGGIFDIE+LV+KLLHQLA
Sbjct: 266 APFQLL-NGRLGVILTYSVYKSEPPANARPQERIQAAVGYLGGIFDIEALVDKLLHQLAG 324
Query: 328 KQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLL 387
KQ+I VNVYD T PISMYGSN + G++ STLN GDP R+HEM CRF QK P P L
Sbjct: 325 KQSIMVNVYDTTTKEKPISMYGSNDTGGGMYHNSTLNSGDPSRRHEMHCRFMQKPPLPWL 384
Query: 388 AISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHE 447
AI++S+GI VI L+G+I ATV+RIAKVE+D M +LKK+AEAADVAKSQFLATVSHE
Sbjct: 385 AITSSLGIYVIFLLIGYIIYATVHRIAKVEDDLQIMKDLKKRAEAADVAKSQFLATVSHE 444
Query: 448 IRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEA 507
IRTPMNGVLGML MLMDT+LD TQQDYVRTAQASGKALVSLINEVLDQAK+ESGKLEL+A
Sbjct: 445 IRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELDA 504
Query: 508 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKF 567
V ++R + DD+LSLF GK+Q+KG+ELAVY+SD+VP+TLIGDP R RQIITNLMGNSIKF
Sbjct: 505 VPLDVRLVCDDILSLFCGKAQEKGLELAVYVSDQVPQTLIGDPNRMRQIITNLMGNSIKF 564
Query: 568 TEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS-- 625
TE+GHI++TV++VEEV+ S++VETE+ ++ NTLSG VA R SW+ F+ FN D +S
Sbjct: 565 TERGHIYLTVHVVEEVMCSLDVETEIQNTYNTLSGCEVAKRRLSWQSFRLFNMDLHSSEL 624
Query: 626 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 685
PF + I LI+SVEDTG GIPLEAQSRIFTPFMQVGPSI+RTHGGTGIGLSISK LV
Sbjct: 625 PFAPIMPETIRLIISVEDTGVGIPLEAQSRIFTPFMQVGPSIARTHGGTGIGLSISKCLV 684
Query: 686 GRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVD 745
MKGEIGFVS ++GSTF+FTAV +N +N P F+G+ ALVVD
Sbjct: 685 HLMKGEIGFVSKHHVGSTFSFTAVLSRARPNAN------VNKSPG-----FKGVSALVVD 733
Query: 746 PRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLF 805
RP+RA V++YH+QRLG++ E+ +D Q + ++ S + ++LV++E W K++
Sbjct: 734 HRPVRANVTKYHLQRLGVKTELTNDVSQVIPKMNCASLVTRLVLVDKETWLKESHSMPQL 793
Query: 806 VNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865
++ LR K+FLL N +S +++++ +VIMKPLR+SML ASL+R +G
Sbjct: 794 LSKLRSKDQSDPPKVFLLENPTNSIKSSSNISREHNLNVIMKPLRASMLEASLRRVLGGV 853
Query: 866 NKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL 925
+K +++N + + +L LL RKI++VDDN VNLKVAA LK+YGA V+C + GKKA L
Sbjct: 854 DKAHVKNGLVGNSALGSLLHKRKIIVVDDNAVNLKVAAGALKKYGAEVICADSGKKAIAL 913
Query: 926 LMPPHQFDACFMDIQMPEMDGYE 948
L PPH FDACFMDIQMPEMDG+E
Sbjct: 914 LKPPHSFDACFMDIQMPEMDGFE 936
>gi|359485817|ref|XP_002269977.2| PREDICTED: histidine kinase 2-like [Vitis vinifera]
Length = 1272
Score = 1048 bits (2711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/899 (59%), Positives = 666/899 (74%), Gaps = 39/899 (4%)
Query: 77 SKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNV 136
S +V W +K+LI ++L ++S+W+FW+++ +RRE L +MCDERARMLQDQFNV
Sbjct: 304 SSKVAGKWRKKLLIIFVLLGVIISIWLFWHLNKDINLRRRETLTNMCDERARMLQDQFNV 363
Query: 137 SMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEF 196
SMNHV A++IL+STFHHGK+PSAIDQ TF YTERTAFERPLTSGVAYA++VL SERE F
Sbjct: 364 SMNHVHALAILVSTFHHGKHPSAIDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREHF 423
Query: 197 EKQQGWTIKRMDTFEHNPVHKD-----EPSPIEEEYAPVIFAQDTVSHVISLDMLSGKED 251
EK+ GWTIK+M+T + V +PSPI++EYAPVIF+Q+TVSH++S+DM+SGKED
Sbjct: 424 EKEHGWTIKKMETEDQTLVQDCILENLDPSPIQDEYAPVIFSQETVSHIVSIDMMSGKED 483
Query: 252 RENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGI 311
REN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY +LP +ATP +RIEAT GYLG
Sbjct: 484 RENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNADLPPDATPEQRIEATVGYLGAS 543
Query: 312 FDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRK 371
+D+ SLV+KLLHQLASKQTI VNVYD TN S PI+MYG+NV+D GL +S L+FGDP RK
Sbjct: 544 YDVPSLVKKLLHQLASKQTIVVNVYDTTNASAPINMYGTNVTDTGLLRISNLDFGDPARK 603
Query: 372 HEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAE 431
HEM CRFKQK P P AI+ S+G+LVI LVGHIF A +NRIAKVE DY MMELK +AE
Sbjct: 604 HEMHCRFKQKPPPPWTAITASVGVLVITLLVGHIFHAAINRIAKVEGDYRQMMELKVRAE 663
Query: 432 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINE 491
AADVAKSQFLATVSHEIRTPMNGVLGML MLMD+ LD QQDY TA ASGK L+SLINE
Sbjct: 664 AADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDSGLDANQQDYAETAHASGKDLISLINE 723
Query: 492 VLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG 551
VLDQAK+ESG+LELEAV F+LRA LD+VLSLFSGKS +KG+ELAVYISD+VPE +IGDPG
Sbjct: 724 VLDQAKIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPG 783
Query: 552 RFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL------------SSSKN 598
RFRQIITNL+GNSIKFT +KGHIFV+V+L +EVV ++ E+ ++S N
Sbjct: 784 RFRQIITNLVGNSIKFTHDKGHIFVSVHLADEVVGPPDLRDEVLRQSLNIVHDSSNNSYN 843
Query: 599 TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 658
TLSG+PV +R SW+ FK + T + +S +I L+V+VEDTG GIP EAQSRIF
Sbjct: 844 TLSGFPVVNRWKSWEKFKKLS---CTDSMEETS--IIKLLVTVEDTGVGIPSEAQSRIFM 898
Query: 659 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 718
PFMQ S SRT+GGTGIGLSISK LV M GEIGF S P GSTF+FT F G ++
Sbjct: 899 PFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFESEPGTGSTFSFTVAFTKGETSL- 957
Query: 719 EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+++Q + P SEFQ ++ALVVD R IRA+V+RYH+QRLGI V+ + S +
Sbjct: 958 -LDTKQQPHDP--AGSEFQELRALVVDCRSIRAEVTRYHLQRLGISVDKTFSLISACSYL 1014
Query: 779 A-----SGSKIINMILVEQEVWEKDTS-VSTLFVNNLRKLGC----GFQSKLFLLANSIS 828
+ S S + M+LV++EVW+K+ V + LR G + K+FLL S+S
Sbjct: 1015 SNNSDPSASTSVAMVLVDKEVWDKEAGLVFHHMLKELRPNGTVEVQEKRPKIFLLDTSLS 1074
Query: 829 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK 888
S+ N + +V+MKPLR S+L + Q G+G + + ++L +LL ++
Sbjct: 1075 SAERNELKSAGFVDNVLMKPLRLSVLISCFQEVFGIGKRKQANRGK--PLTLGNLLREKR 1132
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
IL+VDDN VN +VA LK+YGA V CV+ GK A +L PPH FDACFMD+QMPEMDG+
Sbjct: 1133 ILVVDDNAVNRRVAEFALKKYGAIVTCVDSGKAALLMLKPPHNFDACFMDLQMPEMDGF 1191
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 32/222 (14%)
Query: 1 MSLLHVFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERI 60
MS V G LK+ L+ +C W++ +S+NC ++ S +L+ + K L+
Sbjct: 1 MSFSAVAGVFLKLSRLILKICRWVLLKMSLNCKLSGFSGRLPANLKLKKSKEPLH----- 55
Query: 61 SGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALG 120
GS VR+ W RK L+ WLL ++ L F + + R+E
Sbjct: 56 ---------------GSNCVRK-WRRKFLLLWLL-GVIIGLICFLSVLNAGALSRKEKTP 98
Query: 121 SMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTS 180
+C+E+AR+L + FNVS N + +++ L + DQ+ T+ FE P +
Sbjct: 99 DLCEEKARILLEHFNVSKNQLHSLASLFAES---------DQIASLECTKEAGFEMPPGN 149
Query: 181 GVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSP 222
+A A++V S+ +EFEKQ + ++ + PV +DE P
Sbjct: 150 AIACALKVPCSQNQEFEKQHDQAAESLEPNDQCPV-RDENIP 190
>gi|147789780|emb|CAN76309.1| hypothetical protein VITISV_028333 [Vitis vinifera]
Length = 1400
Score = 1045 bits (2703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/900 (59%), Positives = 666/900 (74%), Gaps = 39/900 (4%)
Query: 77 SKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNV 136
S +V W +K+LI ++L ++S+W+FW+++ +RRE L +MCDERARMLQDQFNV
Sbjct: 343 SSKVAGKWRKKLLIIFVLLGVIISIWLFWHLNKDINLRRRETLTNMCDERARMLQDQFNV 402
Query: 137 SMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEF 196
SMNHV A++IL+STFHHGK+PSAIDQ TF YTERTAFERPLTSGVAYA++VL SERE F
Sbjct: 403 SMNHVHALAILVSTFHHGKHPSAIDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREHF 462
Query: 197 EKQQGWTIKRMDTFEHNPVHKD-----EPSPIEEEYAPVIFAQDTVSHVISLDMLSGKED 251
E + GWTIK+M+T + V +PSPI++EYAPVIF+Q+TVSH++S+DM+SGKED
Sbjct: 463 ENEHGWTIKKMETEDQTLVQDCILENLDPSPIQDEYAPVIFSQETVSHIVSIDMMSGKED 522
Query: 252 RENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGI 311
REN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY +LP +ATP +RIEAT GYLG
Sbjct: 523 RENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNADLPPDATPEQRIEATVGYLGAS 582
Query: 312 FDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRK 371
+D+ SLV+KLLHQLASKQTI VNVYD TN S PI+MYG+NV+D GL +S L+FGDP RK
Sbjct: 583 YDVPSLVKKLLHQLASKQTIVVNVYDTTNASAPINMYGTNVTDTGLLRISNLDFGDPARK 642
Query: 372 HEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAE 431
HEM CRFKQK P P AI+ S+G+LVI LVGHIF A +NRIAKVE DY MMELK +AE
Sbjct: 643 HEMHCRFKQKPPPPWTAITASVGVLVITLLVGHIFHAAINRIAKVEGDYRQMMELKVRAE 702
Query: 432 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINE 491
AADVAKSQFLATVSHEIRTPMNGVLGML MLMD+ LD QQDY TA ASGK L+SLINE
Sbjct: 703 AADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDSGLDANQQDYAETAHASGKDLISLINE 762
Query: 492 VLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG 551
VLDQAK+ESG+LELEAV F+LRA LD+VLSLFSGKS +KG+ELAVYISD+VPE +IGDPG
Sbjct: 763 VLDQAKIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPG 822
Query: 552 RFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL------------SSSKN 598
RFRQIITNL+GNSIKFT +KGHIFV+V+L +EVV ++ E+ ++S N
Sbjct: 823 RFRQIITNLVGNSIKFTHDKGHIFVSVHLADEVVGPPDLRDEVLRQSLNIVHDSSNNSYN 882
Query: 599 TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 658
TLSG+PV +R SW+ FK T + +S +I L+V+VEDTG GIP EAQSRIF
Sbjct: 883 TLSGFPVVNRWKSWEKFKKLX---CTDSMEETS--IIKLLVTVEDTGVGIPSEAQSRIFM 937
Query: 659 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 718
PFMQ S SRT+GGTGIGLSISK LV M GEIGF S P GSTF+FT F G ++
Sbjct: 938 PFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFESEPGTGSTFSFTVAFTKGETSL- 996
Query: 719 EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+++Q + P SEFQG++ALVVD R IRA+V+RYH+QRLGI V+ + S +
Sbjct: 997 -LDTKQQPHDP--AGSEFQGLRALVVDCRSIRAEVTRYHLQRLGISVDKTFSLISACSYL 1053
Query: 779 A-----SGSKIINMILVEQEVWEKDTS-VSTLFVNNLRKLGC----GFQSKLFLLANSIS 828
+ S S + M+LV++EVW+K+ V + LR G + K+FLL S+S
Sbjct: 1054 SNNSDPSASTSVAMVLVDKEVWDKEAGLVFHHMLKELRPNGTVEVQEKRPKIFLLDTSLS 1113
Query: 829 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK 888
S+ N + +V+MKPLR S+L + Q G+G + + ++L +LL ++
Sbjct: 1114 SAERNELKSAGFVDNVLMKPLRLSVLISCFQEVFGIGKRKQANRGK--PLTLGNLLREKR 1171
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
IL+VDDN VN +VA LK+YGA V CV+ GK A +L PPH FDACFMD+QMPEMDG++
Sbjct: 1172 ILVVDDNAVNRRVAEFALKKYGAIVTCVDSGKAALLMLKPPHNFDACFMDLQMPEMDGFK 1231
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 19/163 (11%)
Query: 76 GSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFN 135
GS VR+ W RK L+ WLL ++ L F + + R+E +C+E+AR+L + FN
Sbjct: 70 GSNCVRK-WRRKFLLLWLL-GVIIGLICFLXVLNAGALSRKEKTPDLCEEKARILLEHFN 127
Query: 136 VSMNHVQAMSILISTFHHGK-NPSAIDQMTFTRY---------------TERTAFERPLT 179
VS N + +++ L + G+ + + F +Y T+ FE P
Sbjct: 128 VSKNQLHSLASLFAESDQGQWDIDHKANVEFFKYWQKKYKDGKIASLECTKEAGFEMPPG 187
Query: 180 SGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSP 222
+ +A A++V S+ +EFEKQ + ++ + PV +DE P
Sbjct: 188 NAIACALKVPCSQNQEFEKQHDQAAESLEPNDQCPV-RDENIP 229
>gi|296085009|emb|CBI28424.3| unnamed protein product [Vitis vinifera]
Length = 1203
Score = 1018 bits (2632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/887 (58%), Positives = 644/887 (72%), Gaps = 57/887 (6%)
Query: 77 SKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNV 136
S +V W +K+LI ++L ++S+W+FW+++ +RRE L +MCDERARMLQDQFNV
Sbjct: 277 SSKVAGKWRKKLLIIFVLLGVIISIWLFWHLNKDINLRRRETLTNMCDERARMLQDQFNV 336
Query: 137 SMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEF 196
SMNHV A++IL+STFHHGK+PSAIDQ TF YTERTAFERPLTSGVAYA++VL SERE F
Sbjct: 337 SMNHVHALAILVSTFHHGKHPSAIDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREHF 396
Query: 197 EKQQGWTIKRMDTFEHNPVHKD-----EPSPIEEEYAPVIFAQDTVSHVISLDMLSGKED 251
EK+ GWTIK+M+T + V +PSPI++EYAPVIF+Q+TVSH++S+DM+SGKED
Sbjct: 397 EKEHGWTIKKMETEDQTLVQDCILENLDPSPIQDEYAPVIFSQETVSHIVSIDMMSGKED 456
Query: 252 RENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGI 311
REN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY +LP +ATP +RIEAT GYLG
Sbjct: 457 RENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNADLPPDATPEQRIEATVGYLGAS 516
Query: 312 FDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRK 371
+D+ SLV+KLLHQLASKQTI VNVYD TN S PI+MYG+NV+D GL +S L+FGDP RK
Sbjct: 517 YDVPSLVKKLLHQLASKQTIVVNVYDTTNASAPINMYGTNVTDTGLLRISNLDFGDPARK 576
Query: 372 HEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAE 431
HEM CRFKQK P P AI+ S+G+LVI LVGHIF A +NRIAKVE DY MMELK +AE
Sbjct: 577 HEMHCRFKQKPPPPWTAITASVGVLVITLLVGHIFHAAINRIAKVEGDYRQMMELKVRAE 636
Query: 432 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINE 491
AADVAKSQFLATVSHEIRTPMNGVLGML MLMD+ LD QQDY TA ASGK L+SLINE
Sbjct: 637 AADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDSGLDANQQDYAETAHASGKDLISLINE 696
Query: 492 VLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG 551
VLDQAK+ESG+LELEAV F+LRA LD+VLSLFSGKS +KG+ELAVYISD+VPE +IGDPG
Sbjct: 697 VLDQAKIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPG 756
Query: 552 RFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCH 610
RFRQIITNL+GNSIKFT +KGHIFV+V+L +EV
Sbjct: 757 RFRQIITNLVGNSIKFTHDKGHIFVSVHLADEV--------------------------- 789
Query: 611 SWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 670
F + T + +S +I L+V+VEDTG GIP EAQSRIF PFMQ S SRT
Sbjct: 790 ------KFKKLSCTDSMEETS--IIKLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRT 841
Query: 671 HGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPN 730
+GGTGIGLSISK LV M GEIGF S P GSTF+FT F G ++ +++Q + P
Sbjct: 842 YGGTGIGLSISKRLVDLMGGEIGFESEPGTGSTFSFTVAFTKGETSL--LDTKQQPHDP- 898
Query: 731 SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA-----SGSKII 785
SEFQ ++ALVVD R IRA+V+RYH+QRLGI V+ + S ++ S S +
Sbjct: 899 -AGSEFQELRALVVDCRSIRAEVTRYHLQRLGISVDKTFSLISACSYLSNNSDPSASTSV 957
Query: 786 NMILVEQEVWEKDTS-VSTLFVNNLRKLGC----GFQSKLFLLANSISSSRANTSTDGVS 840
M+LV++EVW+K+ V + LR G + K+FLL S+SS+ N
Sbjct: 958 AMVLVDKEVWDKEAGLVFHHMLKELRPNGTVEVQEKRPKIFLLDTSLSSAERNELKSAGF 1017
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
+ +V+MKPLR S+L + Q G+G + + ++L +LL ++IL+VDDN VN +
Sbjct: 1018 VDNVLMKPLRLSVLISCFQEVFGIGKRKQANRGK--PLTLGNLLREKRILVVDDNAVNRR 1075
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
VA LK+YGA V CV+ GK A +L PPH FDACFMD+QMPEMDG+
Sbjct: 1076 VAEFALKKYGAIVTCVDSGKAALLMLKPPHNFDACFMDLQMPEMDGF 1122
Score = 73.9 bits (180), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 12/147 (8%)
Query: 76 GSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFN 135
GS VR+ W RK L+ WLL ++ L F + + R+E +C+E+AR+L + FN
Sbjct: 29 GSNCVRK-WRRKFLLLWLL-GVIIGLICFLSVLNAGALSRKEKTPDLCEEKARILLEHFN 86
Query: 136 VSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREE 195
VS N + +++ L + DQ+ T+ FE P + +A A++V S+ +E
Sbjct: 87 VSKNQLHSLASLFAES---------DQIASLECTKEAGFEMPPGNAIACALKVPCSQNQE 137
Query: 196 FEKQQGWTIKRMDTFEHNPVHKDEPSP 222
FEKQ + ++ + PV +DE P
Sbjct: 138 FEKQHDQAAESLEPNDQCPV-RDENIP 163
>gi|190148355|gb|ACE63260.1| histidine kinase 2 [Betula pendula]
Length = 1260
Score = 1013 bits (2620), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/895 (58%), Positives = 653/895 (72%), Gaps = 46/895 (5%)
Query: 84 WWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQA 143
W +K L+ ++L +S+W+FWYM+ + +R E L +MCDERARMLQDQFNVSMNHV A
Sbjct: 306 WRKKFLLLFVLNGITMSIWLFWYMNQEIILRREETLANMCDERARMLQDQFNVSMNHVHA 365
Query: 144 MSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWT 203
++IL+STFHHGK+PSAIDQ TF YTERTAFERPLTSGVAYA++V S RE+FE+Q GWT
Sbjct: 366 LAILVSTFHHGKHPSAIDQKTFGEYTERTAFERPLTSGVAYALKVPHSMREQFERQHGWT 425
Query: 204 IKRMDTFEHNPVHKD-----EPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRA 258
IK+M+T + V + +P+PI++EYAPVIF+Q+TVSH++S+DM+SGKEDR+N+LRA
Sbjct: 426 IKKMETEDQTLVQECIPENLDPAPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRDNILRA 485
Query: 259 RASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLV 318
RA+GKGVLT+PF+LLK+N LGV+LTFAVY +LP +ATP +RIEAT GYLG +D+ SLV
Sbjct: 486 RATGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPDATPEKRIEATVGYLGASYDVPSLV 545
Query: 319 EKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRF 378
EKLLHQLASKQ I VNVYD T+ S PI+MYG++V+D GL S L+FGDP RKHEM CRF
Sbjct: 546 EKLLHQLASKQMIVVNVYDTTDASSPINMYGTDVTDTGLLHTSNLDFGDPLRKHEMHCRF 605
Query: 379 KQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKS 438
KQK P P AI+ S+G+LVI LVGHIF A ++RIAKVE+DY MMELK +AEAADVAKS
Sbjct: 606 KQKPPLPWTAINASVGLLVITLLVGHIFYAAISRIAKVEDDYRKMMELKVRAEAADVAKS 665
Query: 439 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKV 498
QFLATVSHEIRTPMNGVLGML MLMDTELD QQDY TA ASGK L+SLINEVLD+AK+
Sbjct: 666 QFLATVSHEIRTPMNGVLGMLQMLMDTELDAIQQDYAETAHASGKDLISLINEVLDRAKI 725
Query: 499 ESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIIT 558
ESG+LELEAV F+LRA+LD+V SL SGKS D +ELAVY+S+RVPE +IGDPGRFRQIIT
Sbjct: 726 ESGRLELEAVPFDLRAVLDNVSSLLSGKSYDIRMELAVYVSNRVPEVIIGDPGRFRQIIT 785
Query: 559 NLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETE-----LSS-------SKNTLSGYPV 605
NL+GNSIKFT + GHI ++V+L +EV ++ E LSS + NTLSG+ V
Sbjct: 786 NLVGNSIKFTRDTGHILISVHLADEVNGGPDMMDEVMRQGLSSVHEMSDKTYNTLSGFRV 845
Query: 606 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665
DR SW+ FK S ++I L+V+VEDTG GIPLEAQSRIFTPFMQ
Sbjct: 846 VDRWKSWEHFKKLGCRNSM-----EEPEMIKLLVTVEDTGVGIPLEAQSRIFTPFMQADS 900
Query: 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 725
S SRT+GGTGIGLSI K LV M GEIGFVS P +GSTF+FT +F T+ + QQ
Sbjct: 901 STSRTYGGTGIGLSICKCLVDLMGGEIGFVSEPGVGSTFSFTGLFRKVEVTTPDTKCQQY 960
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---- 781
SE +G++ALV+D R IRA+V+RYH+QRLGI ++ S ++S
Sbjct: 961 ----EPALSELRGLRALVIDKRIIRAEVTRYHLQRLGISSDITFSLKSACSYLSSACDTS 1016
Query: 782 -SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS-------KLFLLANSISSSRAN 833
S +M+L++++VW+K+TS+S F +L+ G ++ K+FLLA SI
Sbjct: 1017 VSAKFSMVLIDKDVWDKETSLS--FHLSLKDHGQNSRTEIPINLPKIFLLATSIGQDEHT 1074
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
+ +V++KPLR +L A LQ A+G K N + S +L LL ++IL+VD
Sbjct: 1075 ELKSAGVVDNVLIKPLRLGVLGACLQEALG-RRKVNRKK----SSTLGSLLREKRILVVD 1129
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
DN VN +VA LK+YGA V CVE GK A +L PPH FDACFMD+QMPEMDG+E
Sbjct: 1130 DNAVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDGFE 1184
Score = 63.5 bits (153), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 41/226 (18%)
Query: 8 GFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERISGNSYYI 67
GF LK+ LL + W++ +S++C L G F L ++ +
Sbjct: 9 GF-LKLSRLLVGIHRWVMVKMSLDC-----------KLSG--FNGRLPACSKLKKTKEQL 54
Query: 68 HHLYYQSIGSKRVRETWWRKVLITWLLF-WTLVSLWIFWYMSSQATEKRREALGSMCDER 126
H G VR+ W RK+L WL+ TL S+W+F +++ T ++ CD +
Sbjct: 55 H-------GPNSVRK-WRRKLLFLWLIVVITLGSIWVFSSLNA-GTLTGKDMTPDSCDGK 105
Query: 127 ARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAV 186
A++L FNVS + + A++ L S DQ+T + ++ + PL++ +A A+
Sbjct: 106 AQILLQHFNVSNSQLHALASLFSES---------DQITSLQCSKNLGPKMPLSNSIACAL 156
Query: 187 RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIF 232
R+ S+ +EF KQ W N KD+ S + +E+ P F
Sbjct: 157 RLPCSDMQEFHKQHRW-------IAENDEPKDQCS-VRDEFIPRKF 194
>gi|224131798|ref|XP_002321181.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222861954|gb|EEE99496.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1234
Score = 1010 bits (2611), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/973 (54%), Positives = 686/973 (70%), Gaps = 52/973 (5%)
Query: 6 VFGFGLKVGHLLWMLCCWIVSVISMNCFMNYESKDTKTDLRGEVFKMWLNCWERISGNSY 65
+F F L V W+L IVS I + + + K + ++ E + + N +
Sbjct: 207 LFSFDL-VKECWWVLVGMIVSCILLGYNLKFWRKQNQKLVQLEPVPQQRQ--QLLQMNQH 263
Query: 66 YIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDE 125
+ H + G W +K+LI ++L LVS+W+FW++ + +R E L +MCDE
Sbjct: 264 QLSHSPPRGAGK------WRKKLLIIFVLLGVLVSIWLFWHLHEKIISRREETLANMCDE 317
Query: 126 RARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYA 185
RARMLQDQFNVSMNHV A++IL+STFHHGKNPSAIDQ TF YT+RT FERPLTSGVAYA
Sbjct: 318 RARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFGEYTKRTDFERPLTSGVAYA 377
Query: 186 VRVLRSEREEFEKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTVSHV 240
++V ER++FE+Q GWTIK+M T + V K +P+PI++EYAPVIF+Q+TVSH+
Sbjct: 378 LKVPHLERKQFEEQHGWTIKKMGTEDQTLVQDCIPDKLDPAPIQDEYAPVIFSQETVSHI 437
Query: 241 ISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNER 300
+S+DM+SGKEDREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY +LP +ATP +R
Sbjct: 438 VSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLP-DATPEQR 496
Query: 301 IEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV 360
I+AT GYLG +D+ SLVEKLLHQL+SKQTI VNVYD TN + PI MYG++V+D GL V
Sbjct: 497 IDATVGYLGASYDVPSLVEKLLHQLSSKQTIVVNVYDTTNATAPILMYGTDVTDTGLLHV 556
Query: 361 STLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDY 420
S+L+FGDP RKHEM CRFK K P P AI+ S+G+LVI LVGHIF A +NRIAKVEEDY
Sbjct: 557 SSLDFGDPLRKHEMHCRFKHKPPLPWPAINASVGLLVITLLVGHIFHAAINRIAKVEEDY 616
Query: 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 480
MMELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLM+T+LDV Q DY TA
Sbjct: 617 REMMELKARAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMETDLDVNQMDYANTAHT 676
Query: 481 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE-LAVYIS 539
SGK L++LINEVLDQAK+ESG+LELEAV F+LR++LD+VLSLFSGKS +KG+E LAVY+S
Sbjct: 677 SGKDLIALINEVLDQAKIESGRLELEAVPFDLRSVLDNVLSLFSGKSNEKGIEKLAVYVS 736
Query: 540 DRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL----- 593
DR+PE +IGDPGRFRQIITNL+GNSIKFT +KGH+FV+V+L +EV ++ +
Sbjct: 737 DRLPEVVIGDPGRFRQIITNLVGNSIKFTRDKGHVFVSVHLADEVRSPLDARDAVLKQGL 796
Query: 594 -----SSSK--NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 646
+SSK ++LSG+PV +R SW+ FK S+ ++I L+V+VEDTG
Sbjct: 797 ELVQDTSSKVYDSLSGFPVVNRWKSWEKFKK-----SSCIDSRDEPEMIRLLVTVEDTGV 851
Query: 647 GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 706
GIP +AQ IFTPFMQ S SR +GGTGIGLSISK LV M GEIGFVS IGSTF+F
Sbjct: 852 GIPEDAQGNIFTPFMQADSSTSRKYGGTGIGLSISKCLVDLMGGEIGFVSECGIGSTFSF 911
Query: 707 TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 766
F G STS + Q + E +G +ALV+D R +RA+V++YH+QRLGI +
Sbjct: 912 IVSFRKGESTSLDTKWQPY----DPAVLEVRGGRALVIDERSVRAEVTKYHLQRLGITAD 967
Query: 767 VVSDQLQCLSQIASG-----SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ---- 817
V + ++SG + ++L++++ W+K++ ++ + + K G
Sbjct: 968 VAPSLKSACAYLSSGYCTSIPADLPIVLIDKDAWDKESGIAFHHLLKMPKKNDGTDIQVD 1027
Query: 818 -SKLFLLANSISSS-RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 875
SK+FLLA +ISS R T G+ + +V++KPLR S+L A Q A G G K + +
Sbjct: 1028 LSKIFLLATTISSDERLELKTSGL-VDNVLVKPLRLSVLIACFQEAFGSGKKSEVNRKKP 1086
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
P +L++LL G++IL+VDDN VN +VA LK++GA V CVE GK A E L PPH FDAC
Sbjct: 1087 P--ALQNLLRGKQILVVDDNLVNRRVAEGALKKHGAIVTCVESGKAALEKLKPPHSFDAC 1144
Query: 936 FMDIQMPEMDGYE 948
FMD QMPEMDG+E
Sbjct: 1145 FMDFQMPEMDGFE 1157
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 19/174 (10%)
Query: 52 MWLNCWERISGNSYYIHHLYYQSIGSKRVRET-----WWRKVLITWLL--FWTLVSLWIF 104
M +NC ++SG++ + + + ET W RK L+ W L T+ S+W+
Sbjct: 1 MSINC--KLSGSNGTSQESFKLRKSKEVLHETNSARKWKRKFLLLWFLGVAVTIGSIWLL 58
Query: 105 WYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMT 164
+ S A ++ ++L S C+E A++L FNVS N + A+ L S DQ+
Sbjct: 59 FSFDSGALGRKGQSLDS-CEEGAQVLLRHFNVSKNQLHALGSLFSDS---------DQVA 108
Query: 165 FTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD 218
T+ E + G+A A++V S+++EF++ W + + PV +
Sbjct: 109 SLDCTKEPGPEMLINDGIACALKVPCSKKQEFQQHIRWVAEDVGPNGKCPVQDE 162
>gi|57900198|dbj|BAD88305.1| putative histidine kinase 2 [Oryza sativa Japonica Group]
gi|57900221|dbj|BAD88327.1| putative histidine kinase 2 [Oryza sativa Japonica Group]
Length = 866
Score = 1001 bits (2588), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/798 (63%), Positives = 612/798 (76%), Gaps = 27/798 (3%)
Query: 163 MTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSP 222
MTF RY ERTAFERPLTSGVAYAVRV ERE+FE+QQGW IK+M + + P P
Sbjct: 1 MTFARYAERTAFERPLTSGVAYAVRVTHGEREQFERQQGWAIKKMYSSSNKKQSSPGPGP 60
Query: 223 IE----------EEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRL 272
+ EEYAPVIFAQD HVIS DMLSG EDR+N+LRAR SGKGVLTAPF+L
Sbjct: 61 GDAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRDNILRARKSGKGVLTAPFKL 120
Query: 273 LKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIF 332
L NRLGVILT+ VYK ELP+ A P+ERI+A GYLGGIFDI++LVEKLL QLAS+++I
Sbjct: 121 L-NNRLGVILTYTVYKYELPAYARPHERIQAAIGYLGGIFDIQALVEKLLKQLASQESIM 179
Query: 333 VNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTS 392
VNVYD TN S PISMYG + + G+ VS LNFGDP RKHEM CRF++K PWP LAI++S
Sbjct: 180 VNVYDTTNES-PISMYGDD-TGSGMCHVSVLNFGDPSRKHEMHCRFEKKPPWPWLAITSS 237
Query: 393 IGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPM 452
G LVIA L GHIFQATV+RIAKVE+D+H M ELKK+AE ADVAKSQFLATVSHEIRTPM
Sbjct: 238 FGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSHEIRTPM 297
Query: 453 NGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 512
NGVLGML MLMDT+LD TQQDYVRTAQASGKALVSLINEVLDQAK+ESGKLELE V F+L
Sbjct: 298 NGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELETVPFDL 357
Query: 513 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH 572
R + DD+LSLF GK+Q+KG+ELAVY+SD+VP+ LIGDPGR RQIITNL+GNSIKFTE+GH
Sbjct: 358 RTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTERGH 417
Query: 573 IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD--GSTSPFKSS 630
I++TV++VEEV+ +EVET + ++ NTLSGYPVA+R SW+ + FN++ S F
Sbjct: 418 IYLTVHVVEEVMSCLEVETGIQNT-NTLSGYPVANRRCSWESIRLFNRELHSSEKSFAPI 476
Query: 631 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKG 690
++D I+L++SVEDTG GIP EAQSR+FTPFMQVGPSI+R HGGTGIGLSISK LVG MKG
Sbjct: 477 ASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKG 536
Query: 691 EIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIR 750
EIGF S P++GSTFTFTAV N+ SSEF+G+ ALVVD RP+R
Sbjct: 537 EIGFASKPHVGSTFTFTAVLMRAHCKGNDIK-----------SSEFKGINALVVDHRPVR 585
Query: 751 AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLR 810
AKV++YH+QRLG++ E+ ++ Q +S++ SGS ++L+++E W K++ + L VN LR
Sbjct: 586 AKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTAKLVLIDKETWLKESHCTPLLVNKLR 645
Query: 811 KLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI 870
KLFLL +S SS + + T +VIMKPLR+SML SL+RA+G +K +
Sbjct: 646 NNDKPDSPKLFLLGSSASSPKGGSDTSREHNLNVIMKPLRASMLQVSLRRALGGVDKVHC 705
Query: 871 RNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH 930
RN + + +L LL ++I++VDDN VNLKVAA LK+YGA V C + GKKA LL PPH
Sbjct: 706 RNGVVGNSTLGSLLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLKPPH 765
Query: 931 QFDACFMDIQMPEMDGYE 948
FDACFMDIQMPEMDG+E
Sbjct: 766 NFDACFMDIQMPEMDGFE 783
>gi|22353121|gb|AAM14700.1| cytokinin receptor [Catharanthus roseus]
Length = 1041
Score = 988 bits (2554), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/896 (56%), Positives = 641/896 (71%), Gaps = 47/896 (5%)
Query: 84 WWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQA 143
WW+ +L+ ++L S+W+FWY+S + +R+E L SMCDERARMLQDQFNVS+NHV A
Sbjct: 82 WWKTLLVVFVLAGIFGSMWLFWYLSEDSKLRRKETLASMCDERARMLQDQFNVSLNHVHA 141
Query: 144 MSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWT 203
++IL+STF+HGK P A+DQ TF YTE+TAFERPLTSGVAYA+RVL SERE+FEKQQGW
Sbjct: 142 LAILVSTFYHGKEPWALDQQTFEDYTEKTAFERPLTSGVAYALRVLHSEREKFEKQQGWI 201
Query: 204 IKRMDTFEHNPVHKD------EPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLR 257
I++MDT E + +D EP+P++ EYAPVIFAQ TVSH++S+DM+SGKEDREN+LR
Sbjct: 202 IRKMDT-EVQTLGQDLVPEKLEPAPVQTEYAPVIFAQKTVSHIVSIDMMSGKEDRENILR 260
Query: 258 ARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESL 317
ARASGKGVLT+PF+LLK+N LGV+LTFAVY +LP AT +RI AT GYLG +D+ SL
Sbjct: 261 ARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDLPPEATREQRINATVGYLGASYDVPSL 320
Query: 318 VEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCR 377
VEKLLHQLASKQTI VNVYD T+ S PI MYG +D GL +S L+FGDP RKHEM CR
Sbjct: 321 VEKLLHQLASKQTIAVNVYDTTDKSAPIKMYGDAANDTGLPRISQLDFGDPSRKHEMHCR 380
Query: 378 FKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAK 437
FKQK P P AI S+G+LVI L+GHIF A +NRIAKVE DY MM LK +AEAAD+AK
Sbjct: 381 FKQKPPPPWTAIIASVGVLVITLLLGHIFHAAINRIAKVERDYREMMALKHRAEAADIAK 440
Query: 438 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497
SQFLATVSHEIRTPM GVLGML MLM T LDV Q DY TA ASGK L+SLINEVLDQAK
Sbjct: 441 SQFLATVSHEIRTPMVGVLGMLQMLMGTNLDVKQLDYAETAHASGKDLISLINEVLDQAK 500
Query: 498 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 557
+ESG+LELEAV F+LRA LD V+SL SGKS +K +ELAVY+SD+VPE +IGDPGRFRQII
Sbjct: 501 IESGRLELEAVPFDLRADLDKVVSLLSGKSHEKDIELAVYVSDQVPEVVIGDPGRFRQII 560
Query: 558 TNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL------------SSSKNTLSGYP 604
TNL+GNSIKFT +KGHIFV+V+L +EV ++++ E+ ++S NTLSG+P
Sbjct: 561 TNLVGNSIKFTKDKGHIFVSVHLADEVKSPLDIKDEVLKQSLTLIQDRSTASFNTLSGFP 620
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
V DR SW+ FK S P +S I L+V+VEDTG GI +AQ RIFTPF+Q
Sbjct: 621 VVDRWRSWEKFKNL----SGMPEESKK---IKLLVTVEDTGDGIVYDAQDRIFTPFVQAD 673
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
S SR +GGTGIGLSISK LV + GEIGFVS P GSTF+FTA F + + +Q
Sbjct: 674 SSTSRKYGGTGIGLSISKRLVDLVGGEIGFVSEPGTGSTFSFTAAFTKAETITGITKWEQ 733
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI-----A 779
+ SEF+G+KALVVD + IRA+V+RY ++RL + V++ S S + +
Sbjct: 734 Y----DLAVSEFRGLKALVVDEKSIRAEVTRYQLKRLEVSVDIASTVEAAYSHLSADVNS 789
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRK-------LGCGFQSKLFLLANSISSSRA 832
S S+ ++M+L++++ W D + +V L+K G K+FLLAN S S
Sbjct: 790 SASERVSMVLIDEDSW--DNEIMARYVGCLKKSDQTASRPSMGMNPKIFLLANPKSFSDC 847
Query: 833 NTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIV 892
+ +V+ KPLR S+L + LQ ++G G + PS ++ +LL G+++L+V
Sbjct: 848 IELKSTGLVDNVLTKPLRLSILISCLQESIGFGRTRQVTRSN-PS-TIGNLLKGKRMLVV 905
Query: 893 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
DDN VN KVA L++YGA V C G+ A + L PPH FDACFMD+QMPEMDG+E
Sbjct: 906 DDNPVNRKVAELALRKYGAVVTCEASGEAALQRLKPPHDFDACFMDLQMPEMDGFE 961
>gi|198387188|gb|ACH87040.1| hybrid type histidine kinase isoform b [Oryza sativa Indica Group]
Length = 865
Score = 988 bits (2553), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/798 (62%), Positives = 610/798 (76%), Gaps = 28/798 (3%)
Query: 163 MTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSP 222
MTF RY RTAFERPLTSGVAYAVRV ERE FE+QQGWTIK+M + + P P
Sbjct: 1 MTFARYAVRTAFERPLTSGVAYAVRVTHGEREHFERQQGWTIKKMYSSSNKKQSSSGPGP 60
Query: 223 IE----------EEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRL 272
+ EEYAPVIFAQD HVIS DMLSG EDR+N+L +R SGKGVLTAPF+L
Sbjct: 61 GDAAVAEIREPAEEYAPVIFAQDAYKHVISFDMLSGNEDRKNILYSRKSGKGVLTAPFKL 120
Query: 273 LKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIF 332
L NRLGVI T+ VYK ELP+NA P+ERI+A GYLGGIFDI++LVEKLL QLAS+++I
Sbjct: 121 L-NNRLGVISTYTVYKSELPANARPHERIQAAIGYLGGIFDIQALVEKLLKQLASQESIM 179
Query: 333 VNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTS 392
VNVYD TN +PISMYG + + G+ VS LNFGDP RKHEM CRF++K PWP LAI++S
Sbjct: 180 VNVYDTTN-ENPISMYGDD-TGSGMCHVSVLNFGDPSRKHEMHCRFEKKPPWPWLAITSS 237
Query: 393 IGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPM 452
G LVIA L GHIFQATV+RIAKVE+D+H M ELKK+AE ADVAKSQFLATVSHEIRTPM
Sbjct: 238 FGTLVIALLTGHIFQATVHRIAKVEDDFHKMSELKKRAEDADVAKSQFLATVSHEIRTPM 297
Query: 453 NGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 512
NGVLGML MLMDT+LD TQQDYVRTAQASGKALVSLINEVLDQAK+ESGKLELE V F+L
Sbjct: 298 NGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELETVPFDL 357
Query: 513 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH 572
R + DD+LSLF GK+Q+KG+ELAVY+SD+VP+ LIGDPGR RQIITNL+GNSIKFTE+GH
Sbjct: 358 RTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTERGH 417
Query: 573 IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD--GSTSPFKSS 630
I++TV++VEEV+ +EVET + ++ NTLSGYPVA+R SW+ + FN++ S F
Sbjct: 418 IYLTVHVVEEVMSCLEVETGIQNT-NTLSGYPVANRRCSWESIRLFNRELHSSEKSFAPI 476
Query: 631 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKG 690
++D I+L++SVEDTG GIP EAQSR+FTPFMQVGPSI+R HGGTGIGLSISK LVG MKG
Sbjct: 477 ASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKG 536
Query: 691 EIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIR 750
EIGF S P++GSTFTFTAV N+ SSEF+G+ ALVVD RP+R
Sbjct: 537 EIGFASKPHVGSTFTFTAVLMRAHCKGNDIK-----------SSEFKGINALVVDHRPVR 585
Query: 751 AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLR 810
AKV++YH+QRLG++ E+ ++ Q +S++ SGS ++L+++E W K++ + L VN LR
Sbjct: 586 AKVTKYHLQRLGVKTELTAELNQFISKLNSGSLTAKLVLIDKETWLKESHCTPLLVNKLR 645
Query: 811 KLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI 870
KLFLL +S SS + + T +VIMKPLR+SML SL+RA+G +K +
Sbjct: 646 NNDKPDSPKLFLLGSSASSPKGGSDTSREHNLNVIMKPLRASMLQVSLRRALGGVDKVHC 705
Query: 871 RNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH 930
RN + + +L LL ++I++VDDN VNLKVA A LK+YGA V C + GKKA LL PPH
Sbjct: 706 RNGVVGNSTLGSLLHKKQIIVVDDNIVNLKVAGA-LKKYGAEVTCADSGKKAITLLKPPH 764
Query: 931 QFDACFMDIQMPEMDGYE 948
FDACFMDIQMPEMDG+E
Sbjct: 765 NFDACFMDIQMPEMDGFE 782
>gi|356553458|ref|XP_003545073.1| PREDICTED: histidine kinase 2-like [Glycine max]
Length = 1225
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/913 (56%), Positives = 656/913 (71%), Gaps = 53/913 (5%)
Query: 76 GSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFN 135
G R W +K+L+ ++ + S W+FW++++ +R E L +MCDERARMLQDQFN
Sbjct: 262 GPSRGAGRWRKKLLVIFVSLGIIGSFWLFWHLNTGIMRRREETLANMCDERARMLQDQFN 321
Query: 136 VSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREE 195
VSMNHV A++IL+STFHHGK+PSAIDQ F YTE TAFERPLTSGVAYA++VL S+R
Sbjct: 322 VSMNHVHALAILVSTFHHGKHPSAIDQKIFGEYTESTAFERPLTSGVAYALKVLHSDRMH 381
Query: 196 FEKQQGWTIKRMDTFEHNPVHKD------EPSPIEEEYAPVIFAQDTVSHVISLDMLSGK 249
FEKQ GWTIK+M+T E+ + +D +P+PI++EYAPVIFAQ+TVSH++S+DM+SGK
Sbjct: 382 FEKQHGWTIKKMET-ENEALVQDCIPENLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGK 440
Query: 250 EDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLG 309
EDREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY LP +AT +RIEAT GYLG
Sbjct: 441 EDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPLDATLEQRIEATVGYLG 500
Query: 310 GIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPF 369
+D+ SLV+KLLHQLASKQTI VNVYD TN S PI+MYG++V+D GL +S+L+FGDP
Sbjct: 501 ASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPITMYGTDVADTGLLYISSLDFGDPL 560
Query: 370 RKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKK 429
RKHEM C FKQ+ P P AI+ S+G+ VI L+GHIF A +NRIAKVE+DY M ELK +
Sbjct: 561 RKHEMHCSFKQRPPLPWTAINASVGVFVITLLLGHIFYAAINRIAKVEDDYRQMRELKVR 620
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489
AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD Q D +TA SGK L+S+I
Sbjct: 621 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDENQMDCAQTAHKSGKDLISVI 680
Query: 490 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 549
+EVLDQAK+E+GKLELEAV+F+ RAILD++LSLFS KS +KG+ELAVY S++VP+ +IGD
Sbjct: 681 SEVLDQAKIEAGKLELEAVAFDPRAILDEILSLFSEKSNEKGIELAVYASNQVPKVVIGD 740
Query: 550 PGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL------------SSS 596
P RFRQIITNL+GNS+KFT +KGH+FV+V+L EV + + + + + +
Sbjct: 741 PKRFRQIITNLVGNSLKFTHDKGHVFVSVHLANEVKNPLHIMDAVLREGLNLNQDISNRT 800
Query: 597 KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 656
+TLSG+PV +R SW FK + G P ++I L+V VEDTG GIP +AQSRI
Sbjct: 801 YDTLSGFPVCNRWKSWANFKQLS--GINEP------EIIQLLVIVEDTGIGIPTDAQSRI 852
Query: 657 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSST 716
FTPFMQ S SRT+GGTGIGLSISK LV M GEIGFVS P IGSTF+FT F G ST
Sbjct: 853 FTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSFTGTFRKGEST 912
Query: 717 SNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV---VSDQLQ 773
S ++ Q NN SEFQG++ LVVD R IRA+V+RYH+QRLG+ V+V ++
Sbjct: 913 S--LDAMQQNNH---FGSEFQGLRTLVVDSRKIRAEVTRYHLQRLGMSVDVTYSLNSACS 967
Query: 774 CLSQIA--SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS------KLFLLAN 825
CLS + S S + MIL++++ W+K+ + L+ R+ G + K+FLLA
Sbjct: 968 CLSNVCNKSMSTQLAMILIDKDAWDKECHI--LYTIKKRRQN-GIKGDPMNLPKIFLLAT 1024
Query: 826 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL 885
+SS+ + I ++MKPL S L + ++G NK R L +LL+
Sbjct: 1025 HLSSNEQDGLKSVGIIDDILMKPLWLSSLIQCYRVSLGTENKRVNRK---KVSKLGNLLI 1081
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
++IL+VDDN VN +VA L++YGA V VE G+ A ++L PH FDACFMD+QMPEMD
Sbjct: 1082 DKQILVVDDNAVNRRVAKGVLQKYGAKVTAVESGRAALKMLKLPHNFDACFMDLQMPEMD 1141
Query: 946 GYE---MLPCFES 955
G+E + C ES
Sbjct: 1142 GFEATRQIRCLES 1154
Score = 44.3 bits (103), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 76 GSKRVRETWWRKVLITWLL-FWTLVSLW-IFWYMSSQATEKRREALGSMCDERARMLQDQ 133
GS R T RK L+ W F + S+W I + S K EA+ C+ER R L +
Sbjct: 29 GSNSPR-TCRRKPLLLWFFGFVAIGSVWFILSFNSKYLVSKENEAI---CEERERALLQR 84
Query: 134 FNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSER 193
+NVS + A++ L S DQ+ ER + L+SG+ +++ E
Sbjct: 85 YNVSRKQIHALASLF---------SGSDQILSNCIDERR-LQMLLSSGMVSTPQLICPEN 134
Query: 194 EEFEKQQGWTIKRMDTFEHNPVHKD 218
+E +K ++ E PV D
Sbjct: 135 QELQKVHTCVADTVEPIEQCPVLND 159
>gi|356499485|ref|XP_003518570.1| PREDICTED: histidine kinase 2-like [Glycine max]
Length = 1282
Score = 982 bits (2538), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/910 (55%), Positives = 651/910 (71%), Gaps = 50/910 (5%)
Query: 76 GSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFN 135
G R W +K+L+ ++ + S W+FW++++ ++R E L +MCDERARMLQDQFN
Sbjct: 322 GPSRGTGRWRKKLLVIFVSLGIIGSFWLFWHLNTGIMQRREETLANMCDERARMLQDQFN 381
Query: 136 VSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREE 195
VSMNHV A++IL+STFHHGK+PSAIDQ F YTE TAFERPLTSGVAYA++VL S+R
Sbjct: 382 VSMNHVHALAILVSTFHHGKHPSAIDQKIFGEYTESTAFERPLTSGVAYALKVLHSDRMH 441
Query: 196 FEKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKE 250
FEKQ GWTIK+M+T V K +P+PI++EYAPVIFAQ+TVSH++S+DM+SGKE
Sbjct: 442 FEKQHGWTIKKMETENEALVQDCIPEKLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKE 501
Query: 251 DRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGG 310
D EN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY LP +ATP +R EAT GYLG
Sbjct: 502 DHENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPLDATPEQRTEATVGYLGA 561
Query: 311 IFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFR 370
+D+ SLV+KLLHQLASKQTI VNVYD TN S PI+MYG++V+D GL +S+L+FGDP R
Sbjct: 562 SYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPITMYGTDVADTGLLHISSLDFGDPLR 621
Query: 371 KHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKA 430
KHEM CRFKQ+ P P AI+ S+G+ VI L+GHIF A +NRIAKVE DY M ELK +A
Sbjct: 622 KHEMHCRFKQRPPLPWTAINASVGVFVITLLLGHIFYAAINRIAKVEADYRQMRELKVRA 681
Query: 431 EAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLIN 490
EAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD Q D +TA SGK L+S+I+
Sbjct: 682 EAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDENQMDCAQTAHKSGKDLISVIS 741
Query: 491 EVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP 550
EVLDQAK+E+GKLELEAV+F+ RAILD+VLSLFS KS +KG+ELAVY S++VP+ +IGDP
Sbjct: 742 EVLDQAKIEAGKLELEAVAFDPRAILDEVLSLFSEKSNEKGIELAVYASNQVPKVVIGDP 801
Query: 551 GRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL------------SSSK 597
RFRQIITNL+GNS+KFT +KGH+FV+V+L EV + + + + + +
Sbjct: 802 KRFRQIITNLVGNSLKFTHDKGHVFVSVHLASEVKNPLHIMDAVLREGLNLSQDITNRTY 861
Query: 598 NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 657
+TLSG+PV +R SW F + G+ P ++I L+V VEDTG GIP +AQSRIF
Sbjct: 862 DTLSGFPVCNRWKSWANFTKLS--GTNEP------EIIQLLVIVEDTGIGIPTDAQSRIF 913
Query: 658 TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTS 717
TPFMQ S SRT+GGTGIGLSIS+ LV M GEIGFVS P IGSTF+FT F G STS
Sbjct: 914 TPFMQADSSTSRTYGGTGIGLSISRCLVDLMGGEIGFVSEPGIGSTFSFTGTFRKGESTS 973
Query: 718 NEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV---VSDQLQC 774
+ Q N SEFQ ++ LVVD R IRA+V++YH+QRLG+ V+V ++ C
Sbjct: 974 LDAMRQN-----NHFGSEFQELRTLVVDRRKIRAEVTKYHLQRLGMSVDVTYSLNSACSC 1028
Query: 775 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS------KLFLLANSIS 828
LS + + S ++ MIL++++ W+K+ + L+ R+ G + K+FLLA +S
Sbjct: 1029 LSNVCNMS-MLAMILIDKDAWDKEYHI--LYTIKKRRQN-GIKGDPLNLPKIFLLATHLS 1084
Query: 829 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK 888
S+ + I ++MKPL S L + ++G NK R L +LL+ ++
Sbjct: 1085 SNEQDELKSVGVIDDILMKPLWFSSLIQCYRESLGTENKRVNRK---KVSKLGNLLIDKQ 1141
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
IL+VDDN VN +VA L++YGA V VE G+ A ++L PH FDACFMD+QMPEMDG+E
Sbjct: 1142 ILVVDDNAVNRRVAKGVLQKYGAKVTAVESGRAALKMLELPHNFDACFMDLQMPEMDGFE 1201
Query: 949 M---LPCFES 955
+ C ES
Sbjct: 1202 ATRKIRCLES 1211
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 19/137 (13%)
Query: 86 RKVLITWLLFWTLVSLWIFWYM----SSQATEKRREALGSMCDERARMLQDQFNVSMNHV 141
RK L+ W F+ V++ W++ S K EA+ C+ER R+L ++NVS +
Sbjct: 107 RKPLLLW--FFGFVAIGTVWFILSFNSKYLMSKENEAI---CEERERILLQRYNVSRKQI 161
Query: 142 QAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQG 201
A++ L+ S DQ+ ER + L SG+ +++ E +E +K+
Sbjct: 162 HALASLL---------SGSDQILSNCIDERR-LQMLLGSGMVSTPQLMCPENQELQKEHT 211
Query: 202 WTIKRMDTFEHNPVHKD 218
+ ++ E P+ D
Sbjct: 212 CVVDTVEPIEQCPILDD 228
>gi|449444494|ref|XP_004140009.1| PREDICTED: histidine kinase 2-like [Cucumis sativus]
Length = 1240
Score = 981 bits (2536), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/893 (57%), Positives = 640/893 (71%), Gaps = 40/893 (4%)
Query: 85 WRKVLITWLLFWTLV-SLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQA 143
WRKVL+ + +V S+W+F Y++ A +R E L +MCDERARMLQDQFNVSMNHV A
Sbjct: 281 WRKVLLRIFIVVGIVGSVWLFRYLNKTAILRREETLANMCDERARMLQDQFNVSMNHVHA 340
Query: 144 MSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWT 203
+++L STFHHGK PSAIDQ TF YTERTAFERPLTSGVAYA++V SERE FE GWT
Sbjct: 341 LAVLTSTFHHGKQPSAIDQKTFGEYTERTAFERPLTSGVAYALKVNHSEREHFEVMHGWT 400
Query: 204 IKRMDTFEHNPVHKD-----EPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRA 258
IK+M+T + V EP+PI +EYAPVIF+Q+TV+H++S+DM+SGKEDREN+LRA
Sbjct: 401 IKKMETEDQTLVQDCNPENLEPAPIRDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRA 460
Query: 259 RASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLV 318
RASGKGVLT+PF+LLK+N LGV+LTFAVY +LP +ATP +RIEAT GYLG +DI SLV
Sbjct: 461 RASGKGVLTSPFKLLKSNHLGVVLTFAVYSTDLPLDATPEQRIEATVGYLGASYDIPSLV 520
Query: 319 EKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRF 378
EKLLHQLASKQTI VNVYD TN S PI+MYGS+ +D GL +S L+FGDP R+HEM CRF
Sbjct: 521 EKLLHQLASKQTIVVNVYDTTNESAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRF 580
Query: 379 KQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKS 438
K K P P AI++S+G+L+I LVGHIF A ++RIAKVE DYH MM+LK AEAADVAKS
Sbjct: 581 KHKPPPPWTAINSSVGVLIITLLVGHIFHAAISRIAKVENDYHKMMDLKSLAEAADVAKS 640
Query: 439 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKV 498
QFLATVSHEIRTPMNGVLGML +LMDT LD Q D+ +TA SGK L+SLIN+VLDQAK+
Sbjct: 641 QFLATVSHEIRTPMNGVLGMLKLLMDTNLDSKQLDFAQTAHESGKDLISLINKVLDQAKI 700
Query: 499 ESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIIT 558
ESG LELE+V F+LR I+D V+S FS KS +KG+ELAVY+SD VPE +IGD GRFRQIIT
Sbjct: 701 ESGSLELESVPFDLRDIVDKVVSPFSLKSNEKGIELAVYVSDLVPEVVIGDHGRFRQIIT 760
Query: 559 NLMGNSIKFTE-KGHIFVTVYLVEEV---VDSIEVETELSS---------SKNTLSGYPV 605
+L+GNS+KFT KGHI V+V+L +EV VD +++ + S S T SG PV
Sbjct: 761 HLVGNSLKFTHNKGHILVSVHLADEVRATVDFMDIVLKQGSYIVGDTSNNSCTTFSGLPV 820
Query: 606 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665
DR SW+ FK F G T + S +I ++V+VEDTG GIP AQSRIFTPFMQ
Sbjct: 821 VDRWKSWEDFKKF---GRTDVVEESK--MIRILVTVEDTGVGIPQNAQSRIFTPFMQADS 875
Query: 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 725
S SRT+GGTGIGLSISK LV M GEIGFVS P IGSTF+FT F G ++ + Q
Sbjct: 876 STSRTYGGTGIGLSISKRLVDLMDGEIGFVSEPGIGSTFSFTVSFQKGETSILDTRQPQY 935
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV---VSDQLQCLSQIAS-- 780
+ EFQG++AL++D IRA+V+RYH+QRLGI V++ Q LS +
Sbjct: 936 ----DVGVREFQGLRALIIDNSCIRAEVTRYHLQRLGISVDITLSAQSAYQYLSNTSHTR 991
Query: 781 GSKIINMILVEQEVWEKDTSVS--TLFVNNLRKLGCGFQ---SKLFLLANSISSSRANTS 835
S + MIL+++++W+K + LF ++ + G Q KLF+LA SS+ N
Sbjct: 992 ASTQLAMILIDRDIWDKKMGLKFHHLFKEHVDRSGTDVQMNGPKLFVLATPKSSNEHNEL 1051
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ +V+ KPL+ L + + A G+ + + + PS +LR+LL + IL+VDDN
Sbjct: 1052 KSSGHVNNVLSKPLQLDALVSCFREAFGIEKRNQVI-IKKPS-TLRNLLKEKHILVVDDN 1109
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VN++VA LK+YGA V CV+ GK A LL PPH FDACFMD+QMPEMDGYE
Sbjct: 1110 AVNIRVAEGALKKYGAIVTCVKCGKDAVALLNPPHNFDACFMDLQMPEMDGYE 1162
>gi|449505124|ref|XP_004162383.1| PREDICTED: histidine kinase 2-like [Cucumis sativus]
Length = 1240
Score = 980 bits (2533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/893 (57%), Positives = 640/893 (71%), Gaps = 40/893 (4%)
Query: 85 WRKVLITWLLFWTLV-SLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQA 143
WRKVL+ + +V S+W+F Y++ A +R E L +MCDERARMLQDQFNVSMNHV A
Sbjct: 281 WRKVLLRIFIVVGIVGSVWLFRYLNKTAILRREETLANMCDERARMLQDQFNVSMNHVHA 340
Query: 144 MSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWT 203
+++L STFHHGK PSAIDQ TF YTERTAFERPLTSGVAYA++V SERE FE GWT
Sbjct: 341 LAVLTSTFHHGKQPSAIDQKTFGEYTERTAFERPLTSGVAYALKVNHSEREHFEVMHGWT 400
Query: 204 IKRMDTFEHNPVHKD-----EPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRA 258
IK+M+T + V EP+PI +EYAPVIF+Q+TV+H++S+DM+SGKEDREN+LRA
Sbjct: 401 IKKMETEDQTLVQDCNPENLEPAPIRDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRA 460
Query: 259 RASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLV 318
RASGKGVLT+PF+LLK+N LGV+LTFAVY +LP +ATP +RIEAT GYLG +DI SLV
Sbjct: 461 RASGKGVLTSPFKLLKSNHLGVVLTFAVYSTDLPLDATPEQRIEATVGYLGASYDIPSLV 520
Query: 319 EKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRF 378
EKLLHQLASKQTI VNVYD TN S PI+MYGS+ +D GL +S L+FGDP R+HEM CRF
Sbjct: 521 EKLLHQLASKQTIVVNVYDTTNESAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRF 580
Query: 379 KQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKS 438
K K P P AI++S+G+L+I LVGHIF A ++RIAKVE DYH MM+LK AEAADVAKS
Sbjct: 581 KHKPPPPWTAINSSVGVLIITLLVGHIFHAAISRIAKVENDYHKMMDLKSLAEAADVAKS 640
Query: 439 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKV 498
QFLATVSHEIRTPMNGVLGML +LMDT LD Q D+ +TA SGK L+SLIN+VLDQAK+
Sbjct: 641 QFLATVSHEIRTPMNGVLGMLKLLMDTNLDSKQLDFAQTAHESGKDLISLINKVLDQAKI 700
Query: 499 ESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIIT 558
ESG LELE+V F+LR I+D V+S FS KS +KG+ELAVY+SD VPE +IGD GRFRQIIT
Sbjct: 701 ESGSLELESVPFDLRDIVDKVVSPFSLKSNEKGIELAVYVSDLVPEVVIGDHGRFRQIIT 760
Query: 559 NLMGNSIKFTE-KGHIFVTVYLVEEV---VDSIEVETELSS---------SKNTLSGYPV 605
+L+GNS+KFT KGHI V+V+L +EV VD +++ + S S T SG PV
Sbjct: 761 HLVGNSLKFTHNKGHILVSVHLADEVRGTVDFMDIVLKQGSYIVGDTSNNSCTTFSGLPV 820
Query: 606 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665
DR SW+ FK F G T + S +I ++V+VEDTG GIP AQSRIFTPFMQ
Sbjct: 821 VDRWKSWEDFKKF---GRTDVVEESK--MIRILVTVEDTGVGIPQNAQSRIFTPFMQADS 875
Query: 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 725
S SRT+GGTGIGLSISK LV M GEIGFVS P IGSTF+FT F G ++ + Q
Sbjct: 876 STSRTYGGTGIGLSISKRLVDLMDGEIGFVSEPGIGSTFSFTVSFQKGETSILDTRQPQY 935
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV---VSDQLQCLSQIAS-- 780
+ EFQG++AL++D IRA+V+RYH+QRLGI V++ Q LS +
Sbjct: 936 ----DVGVREFQGLRALIIDNSCIRAEVTRYHLQRLGISVDITLSAQSAYQYLSNTSHTR 991
Query: 781 GSKIINMILVEQEVWEKDTSVS--TLFVNNLRKLGCGFQ---SKLFLLANSISSSRANTS 835
S + MIL+++++W+K + LF ++ + G Q KLF+LA SS+ N
Sbjct: 992 ASTQLAMILIDRDIWDKKMGLKFHHLFKEHVDRSGTDVQMNGPKLFVLATPKSSNEHNEL 1051
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ +V+ KPL+ L + + A G+ + + + PS +LR+LL + IL+VDDN
Sbjct: 1052 KSSGHVNNVLSKPLQLDALVSCFREAFGIEKRNQVI-IKKPS-TLRNLLKEKHILVVDDN 1109
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VN++VA LK+YGA V CV+ GK A LL PPH FDACFMD+QMPEMDGYE
Sbjct: 1110 AVNIRVAEGALKKYGAIVTCVKCGKDAVALLNPPHNFDACFMDLQMPEMDGYE 1162
>gi|357495343|ref|XP_003617960.1| Histidine kinase cytokinin receptor [Medicago truncatula]
gi|355519295|gb|AET00919.1| Histidine kinase cytokinin receptor [Medicago truncatula]
Length = 1269
Score = 978 bits (2528), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/901 (56%), Positives = 653/901 (72%), Gaps = 51/901 (5%)
Query: 81 RETWWR--KVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSM 138
+ T WR K+L+ ++ L S W+F YMSS ++R E L +MCDERARMLQDQFNVSM
Sbjct: 255 KATGWRRKKLLVIFMSVGILGSAWLFRYMSSDIAQRREEMLATMCDERARMLQDQFNVSM 314
Query: 139 NHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEK 198
NHV A++IL+STFHHGK+PSA+DQ F YTE +AFERPLTSGVAYA++VL S+R FEK
Sbjct: 315 NHVHALAILVSTFHHGKHPSAVDQKIFGEYTESSAFERPLTSGVAYALKVLHSDRMHFEK 374
Query: 199 QQGWTIKRMDTFEHNPVHKD-----EPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRE 253
Q GWTIK+M+T V + +P+PI++EYAPV+FAQ+TVSH++S+DM+SGKEDRE
Sbjct: 375 QHGWTIKKMETENEALVQECIPENLDPAPIQDEYAPVVFAQETVSHIVSIDMMSGKEDRE 434
Query: 254 NVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFD 313
N+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY +LP +ATP +RIEAT GYLG +D
Sbjct: 435 NILRARASGKGVLTSPFKLLKSNYLGVVLTFAVYDSKLPPDATPEQRIEATVGYLGASYD 494
Query: 314 IESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHE 373
+ SLV+KLLHQLAS+QTI VNVYD TN S PI+MYG++V D GL +S L+FGDP RKHE
Sbjct: 495 VPSLVDKLLHQLASQQTIAVNVYDTTNASDPITMYGTDVLDTGLLHISGLDFGDPLRKHE 554
Query: 374 MRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAA 433
M CRFK P+P A S+G+ VI L+G+IF A +NRIAKVE+DY M ELK +AEAA
Sbjct: 555 MHCRFKHTPPFPWTAFWASVGVFVITFLLGYIFYAAINRIAKVEDDYCQMRELKVRAEAA 614
Query: 434 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVL 493
DVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD Q D+ +TA SGK L+S+I+EVL
Sbjct: 615 DVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDDNQMDFAQTAHTSGKDLISVISEVL 674
Query: 494 DQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRF 553
QAK+E+GKLELEAV+F+ AILD+VLSLFS KS +KG+EL+VY S++VPE +IGDP RF
Sbjct: 675 YQAKIEAGKLELEAVAFHPHAILDEVLSLFSEKSDEKGIELSVYASNQVPEVVIGDPKRF 734
Query: 554 RQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETEL------------SSSKNTL 600
RQIITNL+GNS+KF KGH+FV+++L EV + + + + + NTL
Sbjct: 735 RQIITNLVGNSLKFIHNKGHVFVSIHLANEVKNPLHIMDAVLRECLNLNQDMSERTCNTL 794
Query: 601 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660
SG+PV +R SW+ F+ N + ++ I L+V+VEDTG GIP +AQSRIFTPF
Sbjct: 795 SGFPVGNRWKSWEKFQKLNL--------AHESETIQLLVTVEDTGIGIPTDAQSRIFTPF 846
Query: 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 720
MQ S SRT+GGTGIGLSISK LV M GEIGFVS P IGSTF+FT F G + S +
Sbjct: 847 MQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPEIGSTFSFTGNFRKGETESVDE 906
Query: 721 NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD-QLQC--LSQ 777
Q + N ++SEFQG++ALV+D R IRA+V+RYH+QRLG+ V+V S Q C LS
Sbjct: 907 KWQ----KNNPLASEFQGLRALVIDRRKIRAEVTRYHLQRLGMSVDVNSSLQSACFSLSD 962
Query: 778 IASGSKI--INMILVEQEVWEKDTSVSTLFV------NNLRKLGCGFQSKLFLLANSIS- 828
+ S + + MIL++++ W+K++S+ L+ N ++ F K+FLLA +S
Sbjct: 963 TCNSSMLTQLAMILIDKDSWDKESSI--LYAIKKQGQNGVKGDSLNF-PKIFLLATHLSP 1019
Query: 829 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK 888
+ R + G+ I V+MKPL S+L + ++G G K R L +LL+ ++
Sbjct: 1020 NERKELKSVGI-IDDVLMKPLWQSVLIRYYRESLGTGRKQIDRK---KVSQLENLLIHKR 1075
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
IL+VDDN VN KVA L++YGA V CV+ GK A ++L PPH FDACFMD+QMPEMDG+E
Sbjct: 1076 ILVVDDNAVNRKVAEGVLRKYGAVVTCVDGGKAALKVLKPPHNFDACFMDLQMPEMDGFE 1135
Query: 949 M 949
+
Sbjct: 1136 V 1136
>gi|302121695|gb|ADK92861.1| histidine kinase 1 [Hypericum perforatum]
Length = 1199
Score = 967 bits (2500), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/888 (56%), Positives = 641/888 (72%), Gaps = 38/888 (4%)
Query: 84 WWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQA 143
W +K+L+ ++L S+W+FW++S KR + L SMC ERARMLQDQFNVSMNHV A
Sbjct: 247 WRKKILLIFVLLGIFASIWLFWHLSGSIALKRVDTLASMCGERARMLQDQFNVSMNHVHA 306
Query: 144 MSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWT 203
++IL+STFHHGKNPSAIDQ+TF YTERTAFERPLTSGVAYAV+VL SERE+FEKQQGWT
Sbjct: 307 LAILVSTFHHGKNPSAIDQITFGEYTERTAFERPLTSGVAYAVKVLHSEREQFEKQQGWT 366
Query: 204 IKRMDTFEHNPVHKD-----EPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRA 258
IK+M++ + V +P+P+++EYAPVI Q+TVSH++S+DM+SGK+DREN+LRA
Sbjct: 367 IKKMESEDQTLVQDCSPENLDPAPLQDEYAPVILTQETVSHIVSIDMMSGKDDRENILRA 426
Query: 259 RASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLV 318
RASGKGVLT+PF+LLK+N LGV+LTFAVY ELP +ATP ++IEA GYLG +D+ SLV
Sbjct: 427 RASGKGVLTSPFKLLKSNHLGVVLTFAVYNTELPLDATPEQKIEACVGYLGASYDVPSLV 486
Query: 319 EKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRF 378
EKLL QLASKQTI VNVYD TN S+ I MYGS+V D L VS L+FGDP R+HEMRC F
Sbjct: 487 EKLLQQLASKQTIVVNVYDTTNASNAILMYGSDVIDTDLVHVSNLDFGDPSRRHEMRCWF 546
Query: 379 KQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKS 438
KQKA P AI+ S + +I LVG+IF A + RI +VE + H M++L +AEAADVAKS
Sbjct: 547 KQKASLPWTAINASAAVFIITVLVGYIFHAAIKRIVEVEAECHEMLKLTVRAEAADVAKS 606
Query: 439 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKV 498
+FLATVSHEIRTPMNGVLGML MLMDTELD +Q+DY +TA ASG+ L+SLI +VLDQAK+
Sbjct: 607 KFLATVSHEIRTPMNGVLGMLQMLMDTELDTSQEDYAKTAHASGRELISLIGDVLDQAKI 666
Query: 499 ESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE-LAVYISDRVPETLIGDPGRFRQII 557
ESG+LELEAV F+L ++LD VLS+FSG+S +KG+E LAVY S+ V E +IGDP RFRQII
Sbjct: 667 ESGRLELEAVPFDLHSVLDSVLSMFSGRSSEKGIEKLAVYASNCVSEIVIGDPERFRQII 726
Query: 558 TNLMGNSIKFTEK--GHIFVTVYLVEEVV------------DSIEVETELSSS-KNTLSG 602
NL+GNSIKFT GHIFVTV+LVEEV S+ V+ + S+S TLSG
Sbjct: 727 QNLVGNSIKFTRDNGGHIFVTVHLVEEVTGQLDTKDAVLVNGSVPVDRDPSNSVCETLSG 786
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
YPV +R SW+ FK N + K S D++ ++V+VEDTG GI +AQSRIFTPF+Q
Sbjct: 787 YPVVNRWKSWENFKKNN----INSMKES--DVVRVLVTVEDTGVGISPDAQSRIFTPFVQ 840
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
S SRT+GGTGIGLSISK LV M GEIGFVS NIGSTF+FT G S + S
Sbjct: 841 GDSSTSRTYGGTGIGLSISKCLVELMDGEIGFVSEANIGSTFSFTVSLKRGESRTLGTKS 900
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD-QLQCLSQIASG 781
+ P+ + EFQG ++L+VD R IRA+V++YH++RLG+ ++V D + C + +
Sbjct: 901 PLRD--PSLL--EFQGQRSLIVDNRRIRAEVTKYHLRRLGVHADIVPDLKSACTYRYPAN 956
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ-SKLFLLANSISSSRANTSTDGVS 840
+ ++L++ EVW+K+ + V N K G + K+FLLAN S
Sbjct: 957 ---LALVLIDTEVWDKEAGSAFRSVINASKPNGGAEIPKVFLLANFTGSEERVELKSARL 1013
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
+ +++KPLRSS+LAA+ Q +G G K + + PS +L +L+ G++IL+VDDN VN +
Sbjct: 1014 VDDIVIKPLRSSVLAAAFQETVGSGRKNQVHK-KTPS-ALGNLVRGKQILVVDDNMVNRR 1071
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VA LK+YGA V C G +A ++L PPH+FDACFMD MPEMDG E
Sbjct: 1072 VAEGALKKYGAIVTCANNGSEAVKMLEPPHRFDACFMDRHMPEMDGLE 1119
>gi|297805122|ref|XP_002870445.1| hypothetical protein ARALYDRAFT_493633 [Arabidopsis lyrata subsp.
lyrata]
gi|297316281|gb|EFH46704.1| hypothetical protein ARALYDRAFT_493633 [Arabidopsis lyrata subsp.
lyrata]
Length = 1176
Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/885 (56%), Positives = 636/885 (71%), Gaps = 39/885 (4%)
Query: 84 WWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQA 143
W + +L+ +L S+W FW + + KRRE L +MCDERAR+LQDQFNVS+NHV A
Sbjct: 231 WRKNILLLGILGGVSFSVWWFWNTNEEIIMKRRETLANMCDERARVLQDQFNVSLNHVHA 290
Query: 144 MSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWT 203
+SIL+STFHHGK PSAIDQ TF YTERT FERPLTSGVAYA++V SERE+FEK+ GWT
Sbjct: 291 LSILVSTFHHGKTPSAIDQKTFEEYTERTNFERPLTSGVAYALKVPHSEREKFEKEHGWT 350
Query: 204 IKRMDTFEHNPVHKD------EPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLR 257
IK+M+T E V +D +P+PI+ EYAPVIFAQ+TVSH++S+DM+SG+EDREN+LR
Sbjct: 351 IKKMET-EDQTVVQDCVPENFDPAPIQAEYAPVIFAQETVSHIVSVDMMSGEEDRENILR 409
Query: 258 ARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESL 317
ARASGKGVLT+PF+LLK+N LGV+LTFAVY LP +AT +R+ AT GYLG +D+ SL
Sbjct: 410 ARASGKGVLTSPFKLLKSNNLGVVLTFAVYDTSLPPDATEEQRVGATIGYLGASYDMPSL 469
Query: 318 VEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCR 377
VEKLLHQLASKQTI V+VYD TN S I MYGS + D +S+L+FGDP R HEM CR
Sbjct: 470 VEKLLHQLASKQTIAVDVYDTTNTSGLIKMYGSEIGDISEQHISSLDFGDPSRNHEMHCR 529
Query: 378 FKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAK 437
FK K P P AI+TSI +LVI LVG+IF +NRIA VEED M ELK +AEAADVAK
Sbjct: 530 FKHKLPIPWTAITTSILVLVITFLVGYIFNEAINRIATVEEDCQKMRELKARAEAADVAK 589
Query: 438 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497
SQFLATVSHEIRTPMNGVLGML MLMDT+LD Q DY +TA SGK L SLINEVLDQAK
Sbjct: 590 SQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVLDQAK 649
Query: 498 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 557
+ESG+LELE V F++R ILD+V SL SGK+ +KG+ELAVY+S +VP+ ++GDP RFRQII
Sbjct: 650 IESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVSSQVPDVVVGDPSRFRQII 709
Query: 558 TNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL---------SSSKNTLSGYPVAD 607
TNL+GNSIKFT E+GHIF++V+L EV + + +E + S S T+SG+P +
Sbjct: 710 TNLVGNSIKFTQERGHIFISVHLAAEVREPLNIEDAVLKQRLALGCSESGETVSGFPAVN 769
Query: 608 RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667
SWK FKT ++ ++D I L+V+VEDTG GIP++AQ RIFTPFMQ S
Sbjct: 770 AWGSWKNFKT------CYSTENHNSDKIKLLVTVEDTGVGIPVDAQGRIFTPFMQADSST 823
Query: 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 727
SRT+GGTGIGLSISK LV M+GE+GFVS P IGSTF+FT VFG + ++ ++
Sbjct: 824 SRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTVVFGKAQTNTSITKLERF-- 881
Query: 728 QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD-QLQCLSQIASGSKIIN 786
+ EF+G++ALV+D R IRA+V+ YH+QRLGI ++VS ++ C S S + +
Sbjct: 882 --DLAIQEFKGLRALVIDNRNIRAEVTSYHLQRLGISADIVSSLRMACTS--VSKLENLA 937
Query: 787 MILVEQEVW-EKDTSV-STLFVNNLRKLGCGFQSKLFLLANSIS-SSRANTSTDGVSIPS 843
M+L++++ W +KD SV LF + K+ K+ LLA S + + R+ + G+ I
Sbjct: 938 MVLIDKDAWNKKDFSVLDELFTRS--KVTFTRVPKIILLATSATLTERSEMKSSGL-IDE 994
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
V++KPLR S+L LQ + G K R +L HLL ++IL+VDDN VN +VA
Sbjct: 995 VVIKPLRMSVLICCLQETLVNGKK---RQPNRKRRNLGHLLREKQILVVDDNLVNRRVAE 1051
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
LK+YGA V CVE GK A +L PPH FDACFMD+QMPEMDG+E
Sbjct: 1052 GALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDGFE 1096
>gi|18421494|ref|NP_568532.1| histidine kinase 2 [Arabidopsis thaliana]
gi|75168995|sp|Q9C5U2.1|AHK2_ARATH RecName: Full=Histidine kinase 2; AltName: Full=Arabidopsis histidine
kinase 2; Short=AtHK2; AltName: Full=Protein AUTHENTIC
HIS-KINASE 2
gi|13537196|dbj|BAB40774.1| histidine kinase [Arabidopsis thaliana]
gi|332006631|gb|AED94014.1| histidine kinase 2 [Arabidopsis thaliana]
Length = 1176
Score = 961 bits (2484), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/891 (56%), Positives = 634/891 (71%), Gaps = 36/891 (4%)
Query: 77 SKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNV 136
S R W + +L+ +L S+W FW + + KRRE L +MCDERAR+LQDQFNV
Sbjct: 223 SSRGAGRWRKNILLLGILGGVSFSVWWFWDTNEEIIMKRRETLANMCDERARVLQDQFNV 282
Query: 137 SMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEF 196
S+NHV A+SIL+STFHHGK PSAIDQ TF YTERT FERPLTSGVAYA++V SERE+F
Sbjct: 283 SLNHVHALSILVSTFHHGKIPSAIDQRTFEEYTERTNFERPLTSGVAYALKVPHSEREKF 342
Query: 197 EKQQGWTIKRMDTFEHNPVHKD------EPSPIEEEYAPVIFAQDTVSHVISLDMLSGKE 250
EK+ GW IK+M+T E V +D +P+PI++EYAPVIFAQ+TVSH++S+DM+SG+E
Sbjct: 343 EKEHGWAIKKMET-EDQTVVQDCVPENFDPAPIQDEYAPVIFAQETVSHIVSVDMMSGEE 401
Query: 251 DRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGG 310
DREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY LP +AT +R+EAT GYLG
Sbjct: 402 DRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYDTSLPPDATEEQRVEATIGYLGA 461
Query: 311 IFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFR 370
+D+ SLVEKLLHQLASKQTI V+VYD TN S I MYGS + D +S+L+FGDP R
Sbjct: 462 SYDMPSLVEKLLHQLASKQTIAVDVYDTTNTSGLIKMYGSEIGDISEQHISSLDFGDPSR 521
Query: 371 KHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKA 430
HEM CRFK K P P AI+ SI +LVI LVG+I +NRIA VEED M ELK +A
Sbjct: 522 NHEMHCRFKHKLPIPWTAITPSILVLVITFLVGYILYEAINRIATVEEDCQKMRELKARA 581
Query: 431 EAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLIN 490
EAAD+AKSQFLATVSHEIRTPMNGVLGML MLMDT+LD Q DY +TA SGK L SLIN
Sbjct: 582 EAADIAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLIN 641
Query: 491 EVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP 550
EVLDQAK+ESG+LELE V F++R ILD+V SL SGK+ +KG+ELAVY+S +VP+ ++GDP
Sbjct: 642 EVLDQAKIESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVSSQVPDVVVGDP 701
Query: 551 GRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL---------SSSKNTL 600
RFRQIITNL+GNSIKFT E+GHIF++V+L +EV + + +E + S S T+
Sbjct: 702 SRFRQIITNLVGNSIKFTQERGHIFISVHLADEVKEPLTIEDAVLKQRLALGCSESGETV 761
Query: 601 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660
SG+P + SWK FKT +S ++D I L+V+VEDTG GIP++AQ RIFTPF
Sbjct: 762 SGFPAVNAWGSWKNFKT------CYSTESQNSDQIKLLVTVEDTGVGIPVDAQGRIFTPF 815
Query: 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 720
MQ S SRT+GGTGIGLSISK LV M+GE+GFVS P IGSTF+FT VFG + ++
Sbjct: 816 MQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTGVFGKAETNTSIT 875
Query: 721 NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 780
++ + EF G++ALV+D R IRA+V+RY ++RLGI ++VS + S
Sbjct: 876 KLERF----DLAIQEFTGLRALVIDNRNIRAEVTRYELRRLGISADIVSSLRMACTCCIS 931
Query: 781 GSKIINMILVEQEVWEKD--TSVSTLFVNNLRKLGCGFQSKLFLLANSIS-SSRANTSTD 837
+ + MIL++++ W K+ + + LF + K+ K+FLLA S + + R+ +
Sbjct: 932 KLENLAMILIDKDAWNKEEFSVLDELFTRS--KVTFTRVPKIFLLATSATLTERSEMKST 989
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
G+ I V++KPLR S+L LQ + G K R +L HLL ++IL+VDDN V
Sbjct: 990 GL-IDEVVIKPLRMSVLICCLQETLVNGKK---RQPNRQRRNLGHLLREKQILVVDDNLV 1045
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
N +VA LK+YGA V CVE GK A +L PPH FDACFMD+QMPEMDG+E
Sbjct: 1046 NRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDGFE 1096
>gi|9758650|dbj|BAB09274.1| histidine kinase-like protein [Arabidopsis thaliana]
Length = 1173
Score = 957 bits (2473), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/890 (55%), Positives = 632/890 (71%), Gaps = 37/890 (4%)
Query: 77 SKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNV 136
S R W + +L+ +L S+W FW + + KRRE L +MCDERAR+LQDQFNV
Sbjct: 223 SSRGAGRWRKNILLLGILGGVSFSVWWFWDTNEEIIMKRRETLANMCDERARVLQDQFNV 282
Query: 137 SMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEF 196
S+NHV A+SIL+STFHHGK PSAIDQ TF YTERT FERPLTSGVAYA++V SERE+F
Sbjct: 283 SLNHVHALSILVSTFHHGKIPSAIDQRTFEEYTERTNFERPLTSGVAYALKVPHSEREKF 342
Query: 197 EKQQGWTIKRMDTFEHNPVHKD------EPSPIEEEYAPVIFAQDTVSHVISLDMLSGKE 250
EK+ GW IK+M+T E V +D +P+PI++EYAPVIFAQ+TVSH++S+DM+SG+E
Sbjct: 343 EKEHGWAIKKMET-EDQTVVQDCVPENFDPAPIQDEYAPVIFAQETVSHIVSVDMMSGEE 401
Query: 251 DRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGG 310
DREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY LP +AT +R+EAT GYLG
Sbjct: 402 DRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYDTSLPPDATEEQRVEATIGYLGA 461
Query: 311 IFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFR 370
+D+ SLVEKLLHQLASKQTI V+VYD TN S I MYGS + D +S+L+FGDP R
Sbjct: 462 SYDMPSLVEKLLHQLASKQTIAVDVYDTTNTSGLIKMYGSEIGDISEQHISSLDFGDPSR 521
Query: 371 KHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKA 430
HEM CRFK K P P AI+ SI +LVI LVG+I +NRIA VEED M ELK +A
Sbjct: 522 NHEMHCRFKHKLPIPWTAITPSILVLVITFLVGYILYEAINRIATVEEDCQKMRELKARA 581
Query: 431 EAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLIN 490
EAAD+AKSQFLATVSHEIRTPMNGVLGML MLMDT+LD Q DY +TA SGK L SLIN
Sbjct: 582 EAADIAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLIN 641
Query: 491 EVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP 550
EVLDQAK+ESG+LELE V F++R ILD+V SL SGK+ +KG+ELAVY+S +VP+ ++GDP
Sbjct: 642 EVLDQAKIESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVSSQVPDVVVGDP 701
Query: 551 GRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL---------SSSKNTLS 601
RFRQIITNL+GNSIK E+GHIF++V+L +EV + + +E + S S T+S
Sbjct: 702 SRFRQIITNLVGNSIK--ERGHIFISVHLADEVKEPLTIEDAVLKQRLALGCSESGETVS 759
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
G+P + SWK FKT +S ++D I L+V+VEDTG GIP++AQ RIFTPFM
Sbjct: 760 GFPAVNAWGSWKNFKT------CYSTESQNSDQIKLLVTVEDTGVGIPVDAQGRIFTPFM 813
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q S SRT+GGTGIGLSISK LV M+GE+GFVS P IGSTF+FT VFG + ++
Sbjct: 814 QADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTGVFGKAETNTSITK 873
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
++ + EF G++ALV+D R IRA+V+RY ++RLGI ++VS + S
Sbjct: 874 LERF----DLAIQEFTGLRALVIDNRNIRAEVTRYELRRLGISADIVSSLRMACTCCISK 929
Query: 782 SKIINMILVEQEVWEKD--TSVSTLFVNNLRKLGCGFQSKLFLLANSIS-SSRANTSTDG 838
+ + MIL++++ W K+ + + LF + K+ K+FLLA S + + R+ + G
Sbjct: 930 LENLAMILIDKDAWNKEEFSVLDELFTRS--KVTFTRVPKIFLLATSATLTERSEMKSTG 987
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 898
+ I V++KPLR S+L LQ + G K R +L HLL ++IL+VDDN VN
Sbjct: 988 L-IDEVVIKPLRMSVLICCLQETLVNGKK---RQPNRQRRNLGHLLREKQILVVDDNLVN 1043
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+VA LK+YGA V CVE GK A +L PPH FDACFMD+QMPEMDG+E
Sbjct: 1044 RRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDGFE 1093
>gi|255573224|ref|XP_002527541.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
gi|223533091|gb|EEF34850.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
Length = 1011
Score = 949 bits (2454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/913 (54%), Positives = 641/913 (70%), Gaps = 50/913 (5%)
Query: 73 QSIGSK------RVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDER 126
Q +G+K + W K+L+ W++F VS IF M +Q +R+E L SMCD+R
Sbjct: 27 QQMGTKGSHTFIQAHRAWLPKLLLLWVMFVAFVSYSIFNNMDAQNKVRRKETLSSMCDQR 86
Query: 127 ARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAV 186
ARMLQDQF+VS+NHV A++IL+STFH+ KNPSAIDQ TF YT RT+FERPL SGVAYA
Sbjct: 87 ARMLQDQFSVSVNHVHALAILVSTFHYNKNPSAIDQETFAEYTARTSFERPLLSGVAYAQ 146
Query: 187 RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 246
RV+ SEREEFE Q GWTIK M+ EPSP+ +EYAPVIF+Q+TVS++ SLDM+
Sbjct: 147 RVVNSEREEFESQHGWTIKTMEK---------EPSPLRDEYAPVIFSQETVSYIESLDMM 197
Query: 247 SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 306
SG+EDREN+L ARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP N T ++RIEA+ G
Sbjct: 198 SGEEDRENILNARATGKAVLTSPFRLLNSHHLGVVLTFPVYKSKLPPNPTVSQRIEASAG 257
Query: 307 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 364
YLGG FD+ESLVE LL QLA Q I VNVYD+TN S P+ MYG D + LV S L+
Sbjct: 258 YLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNASDPLIMYGVQNQDGDMSLVHESKLD 317
Query: 365 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 424
FGDPFRKH+M CR+ +KAP A++T+ VI LVG+I N I KVE+D+H M
Sbjct: 318 FGDPFRKHQMICRYHEKAPTSWTALTTAFLFSVIGLLVGYILYGAANHIVKVEDDFHEMQ 377
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+L TQ+DY +TAQA GKA
Sbjct: 378 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQACGKA 437
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L++LINEVLD+AK+E+GKLELEAV F+LR+ILDDVLSLFS KS+ KG+ELAV++SD+VPE
Sbjct: 438 LIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGIELAVFVSDKVPE 497
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV-------VDSI------EVET 591
++GDPGRFRQIITNL+GNS+KFTE+GHIFV V+L E DS +V
Sbjct: 498 IVLGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLDENAKATAFAKADSCLNGGSSDVIV 557
Query: 592 ELSSSKNTLSGYPVADRCHSWKGFK------TFNQDGSTSPFKSSSA-DLINLIVSVEDT 644
S TLSG+ AD + W+ FK F +GS + ++ A + + L+VSVEDT
Sbjct: 558 SDSCQFKTLSGFEAADDRNGWEAFKHLVADEDFQSNGSLNVLTTNDACENVTLVVSVEDT 617
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GIPL AQ R+F PFMQ S SR +GGTGIGLSISK LV M G I FVS P +GSTF
Sbjct: 618 GIGIPLHAQDRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGHISFVSRPQVGSTF 677
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 764
+FTA FG N+ N + N + + S F+G+KA+VVD +P+RA V+ YH++RLGI
Sbjct: 678 SFTAAFGR--CKKNKFNKMEKRNSED-LPSSFRGLKAIVVDGKPVRAAVTTYHLKRLGIL 734
Query: 765 VEVVSD-QLQCLSQIASG----SKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCGFQ- 817
EV S ++ + +G S ++ILVE++ W + S++++ ++ G F+
Sbjct: 735 AEVASSLKVAAFTCAKNGSLKSSAQPDIILVEKDSWISGEDGGSSVWLLERKQNGHVFKL 794
Query: 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 877
K+ LLA +ISS N + +VIMKPLR+SM+ A LQ+ MG+G K + ++P+
Sbjct: 795 PKMILLATNISSDEFNKAKAAGFADTVIMKPLRASMVGACLQQVMGMG-KTRPQGKDVPN 853
Query: 878 MS--LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
S L+ LL G+KIL+VDDN VN +VAA LK++GA V C + GK A +LL PH FDAC
Sbjct: 854 GSSFLQSLLYGKKILVVDDNMVNRRVAAGALKKFGANVECADSGKAALKLLQLPHSFDAC 913
Query: 936 FMDIQMPEMDGYE 948
FMDIQMPEMDG+E
Sbjct: 914 FMDIQMPEMDGFE 926
>gi|190148363|gb|ACE63264.1| cytokinin receptor 1A [Populus trichocarpa]
Length = 1006
Score = 949 bits (2453), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/915 (55%), Positives = 650/915 (71%), Gaps = 52/915 (5%)
Query: 73 QSIGSKR------VRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDER 126
Q +G+KR TW KVL+ W++ L SL I+ M + +R+E LGSMCD+R
Sbjct: 20 QQMGTKRGYTFIQANRTWLPKVLLLWVMAMALFSLTIYNGMDADNKVRRKEVLGSMCDQR 79
Query: 127 ARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAV 186
ARMLQDQF+VS+NHV A++IL+STFH+ KNPSAIDQ TF YT RTAFERPL SGVAYA
Sbjct: 80 ARMLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGVAYAR 139
Query: 187 RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 246
RV+ SER EFE+Q GWTIK M+ EPSPI +EYAPVIF+Q+TVS++ SLDM+
Sbjct: 140 RVIDSERHEFERQHGWTIKTMER---------EPSPIRDEYAPVIFSQETVSYIESLDMM 190
Query: 247 SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 306
SG+EDREN+LRARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP + T +RIEAT G
Sbjct: 191 SGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPSPTVAQRIEATAG 250
Query: 307 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 364
YLGG FDIESLVE LL QLA Q I VNVYDITN S + MYG D L L+ S L+
Sbjct: 251 YLGGAFDIESLVENLLGQLAGNQAILVNVYDITNSSDLLIMYGHQNLDGDLSLLHESKLD 310
Query: 365 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 424
FGDPFRKH M CR+ +KAP A+ST+ VI LVG+I I KVE+D+H M
Sbjct: 311 FGDPFRKHLMTCRYHEKAPTSWTALSTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQ 370
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML +L+DT+L TQ+DY +TAQ GKA
Sbjct: 371 ELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLALLLDTDLSSTQRDYAQTAQVCGKA 430
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L++LINEVLD+AK+E+GKLELEAV F++R+ILDDVLSLFS KS++KG+ELAV++SD+VPE
Sbjct: 431 LIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGIELAVFVSDKVPE 490
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE--EVVDSIEVETELSSSKN---- 598
++GDPGRFRQIITNL+GNS+KFTE+GHIFV V+L E + + +V+T L+ N
Sbjct: 491 IVVGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLYENAKAITDTKVDTCLNGGSNESVL 550
Query: 599 --------TLSGYPVADRCHSWKGFKTFNQ-----DGSTSPFKSSSA-DLINLIVSVEDT 644
TLSG AD +SW FK F+ D S + ++ A + + L+V VEDT
Sbjct: 551 TSGSQKFKTLSGCEAADDQNSWDVFKHFSDEDFRFDASINVMTNNEASEDVGLMVCVEDT 610
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GIPL+AQ R+F PF+Q S SR +GGTGIGLSISK LV M G+I F+S P +GSTF
Sbjct: 611 GIGIPLKAQGRVFMPFVQADSSTSRQYGGTGIGLSISKCLVELMGGQINFISRPEVGSTF 670
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 764
+FTAVF G+ N N+ + N + S F+G+KALVVD P+RA V+RYH++RLGI
Sbjct: 671 SFTAVF--GTCKKNTFNNMEKRN-AEELPSGFRGLKALVVDGNPVRATVTRYHLKRLGIL 727
Query: 765 VEVVSD-QLQCL-----SQIASGSKI-INMILVEQEVW-EKDTSVSTLFVNNLRKLGCGF 816
EVVS +L + + SG KI ++ILVE++ W + VS+++ + ++ G F
Sbjct: 728 AEVVSSLKLAAIGCGKNGSLTSGGKIHPDIILVEKDSWISGEDGVSSVWQLDSKQNGHAF 787
Query: 817 Q-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 875
+ K+ LLA +I++S + + +VI+KPLRSSM+AA L + +G+G K + + +
Sbjct: 788 KLPKMILLATNITNSEFDIAKGAGFADTVILKPLRSSMVAACLLQVLGMGKKRS-QGKGM 846
Query: 876 PSMS--LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 933
P+ S L+ LL G++IL+VDDN VN +VAA LK++GA C E GK+A +LL PPH +D
Sbjct: 847 PNGSSFLQSLLCGKRILVVDDNRVNRRVAAGALKKFGADAECAESGKEALKLLQPPHTYD 906
Query: 934 ACFMDIQMPEMDGYE 948
ACFMDIQMPEMDG+E
Sbjct: 907 ACFMDIQMPEMDGFE 921
>gi|224101927|ref|XP_002312478.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|222852298|gb|EEE89845.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1007
Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/916 (55%), Positives = 649/916 (70%), Gaps = 53/916 (5%)
Query: 73 QSIGSKR------VRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDER 126
Q +G+KR TW KVL+ W++ L SL I+ M + +R+E LGSMCD+R
Sbjct: 20 QQMGTKRGYTFIQANRTWLPKVLLLWVMAMALFSLTIYNGMDADNKVRRKEVLGSMCDQR 79
Query: 127 ARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAV 186
ARMLQDQF+VS+NHV A++IL+STFH+ KNPSAIDQ TF YT RTAFERPL SGVAYA
Sbjct: 80 ARMLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGVAYAR 139
Query: 187 RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 246
RV+ SER EFE+Q GWTIK M+ EPSPI +EYAPVIF+Q+TVS++ SLDM+
Sbjct: 140 RVIDSERHEFERQHGWTIKTMER---------EPSPIRDEYAPVIFSQETVSYIESLDMM 190
Query: 247 SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 306
SG+EDREN+LRARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP + T +RIEAT G
Sbjct: 191 SGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPSPTVAQRIEATAG 250
Query: 307 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 364
YLGG FDIESLVE LL QLA Q I VNVYDITN S + MYG D L L+ S L+
Sbjct: 251 YLGGAFDIESLVENLLGQLAGNQAILVNVYDITNSSDLLIMYGHQNLDGDLSLLHESKLD 310
Query: 365 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 424
FGDPFRKH M CR+ +KAP A+ST+ VI LVG+I I KVE+D+H M
Sbjct: 311 FGDPFRKHLMTCRYHEKAPTSWTALSTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQ 370
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML +L+DT+L TQ+DY +TAQ GKA
Sbjct: 371 ELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLALLLDTDLSSTQRDYAQTAQVCGKA 430
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L++LINEVLD+AK+E+GKLELEAV F++R+ILDDVLSLFS KS++KG+ELAV++SD+VPE
Sbjct: 431 LIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGIELAVFVSDKVPE 490
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE--EVVDSIEVETELSSSKN---- 598
++GDPGRFRQIITNL+GNS+KFTE+GHIFV V+L E + + +V+T L+ N
Sbjct: 491 IVVGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLYENAKAITDTKVDTCLNGGSNESVL 550
Query: 599 --------TLSGYPVADRCHSWKGFKTFNQ-----DGSTSPFKSSSA-DLINLIVSVEDT 644
TLSG AD +SW FK F+ D S + ++ A + + L+V VEDT
Sbjct: 551 TSGSQKFKTLSGCEAADDQNSWDVFKHFSDEDFRFDASINVMTNNEASEDVGLMVCVEDT 610
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GIPL+AQ R+F PF+Q S SR +GGTGIGLSISK LV M G+I F+S P +GSTF
Sbjct: 611 GIGIPLKAQGRVFMPFVQADSSTSRQYGGTGIGLSISKCLVELMGGQINFISRPEVGSTF 670
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 764
+FTAVF G+ N N+ + N + S F+G+KALVVD P+RA V+RYH++RLGI
Sbjct: 671 SFTAVF--GTCKKNTFNNMEKRN-AEELPSGFRGLKALVVDGNPVRATVTRYHLKRLGIL 727
Query: 765 VEVVSD-QLQCL-----SQIASGSKII--NMILVEQEVW-EKDTSVSTLFVNNLRKLGCG 815
EVVS +L + + SG I ++ILVE++ W + VS+++ + ++ G
Sbjct: 728 AEVVSSLKLAAIGCGKNGSLTSGRGKIHPDIILVEKDSWISGEDGVSSVWQLDSKQNGHA 787
Query: 816 FQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 874
F+ K+ LLA +I++S + + +VI+KPLRSSM+AA L + +G+G K + +
Sbjct: 788 FKLPKMILLATNITNSEFDIAKGAGFADTVILKPLRSSMVAACLLQVLGMGKKRS-QGKG 846
Query: 875 LPSMS--LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF 932
+P+ S L+ LL G++IL+VDDN VN +VAA LK++GA C E GK+A +LL PPH +
Sbjct: 847 MPNGSSFLQSLLCGKRILVVDDNRVNRRVAAGALKKFGADAECAESGKEALKLLQPPHTY 906
Query: 933 DACFMDIQMPEMDGYE 948
DACFMDIQMPEMDG+E
Sbjct: 907 DACFMDIQMPEMDGFE 922
>gi|449450139|ref|XP_004142821.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
gi|449523071|ref|XP_004168548.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
Length = 985
Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/901 (54%), Positives = 628/901 (69%), Gaps = 45/901 (4%)
Query: 79 RVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSM 138
+ W RK L+ W++ +S+ I+ M + +R E LGSMC++RARMLQDQF+VS+
Sbjct: 27 QANRAWLRKYLLFWIMGMAFISMLIYNGMDADNKVRRNEVLGSMCEQRARMLQDQFSVSV 86
Query: 139 NHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEK 198
NHV A+++L+STFH+ KNPSAIDQ TF YT RTAFERPL SGVAYA RV+ SER+ FEK
Sbjct: 87 NHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIHSERDIFEK 146
Query: 199 QQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRA 258
Q GW IK M K EPSPI +EYAPVIF+Q+TVS++ SLDM+SG+EDREN+LRA
Sbjct: 147 QHGWMIKTM---------KREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRA 197
Query: 259 RASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLV 318
RA+GK VLT+PFRLL ++ LGV+LTF VYK +LPS T +RIEAT GY+GG FD+ESLV
Sbjct: 198 RATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSKPTEEDRIEATAGYVGGAFDVESLV 257
Query: 319 EKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLNFGDPFRKHEMRC 376
E LL QLA Q I VNVYD+TN S P+ MYG D L L+ S+L+FGDPFRKH M C
Sbjct: 258 ENLLGQLAGNQAILVNVYDVTNSSDPLVMYGHQYQDGDLSLLHESSLDFGDPFRKHLMIC 317
Query: 377 RFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVA 436
R++Q+AP A++T+ VI LVG+I I KVE+D+H M LK +AEAAD+A
Sbjct: 318 RYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHILKVEDDFHAMQILKVRAEAADIA 377
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KSQFLATVSHEIRTPMNG+LGML +L+DT+L TQ+DY +TAQA GKAL++LINEVLD+A
Sbjct: 378 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRA 437
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+GKLELEAV F++R+ILDDVLSLFS KS+ KG+ELAV++SD+VPE +IGDPGRFRQI
Sbjct: 438 KIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQI 497
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE--TELSSSK---------NTLSGYPV 605
ITNL+GNS+KFTE+GHIFV V+L E SI+ + +S S TLSG
Sbjct: 498 ITNLVGNSVKFTERGHIFVKVHLAEHSKGSIDSKYVNGISDSDLFISGGRDFQTLSGCEA 557
Query: 606 ADRCHSWKGFK--------TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 657
AD + W FK N ++ + + L+VSVEDTG GI L AQ+R+F
Sbjct: 558 ADDQNGWDNFKHIIADEDFQLNATPNSMVVANEGCGHVTLMVSVEDTGIGILLHAQNRVF 617
Query: 658 TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTS 717
PFMQ S SR +GGTGIGLSISK LV M G+I F+S P IGSTF+FTAVFG
Sbjct: 618 MPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVFGKC---- 673
Query: 718 NEHNSQQMNNQPNS--VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS--DQLQ 773
+ NS +PNS + F+GMKA++VD + +RA V+RYH++RLGI+VEV S +
Sbjct: 674 -KKNSINDLKKPNSEELPPSFRGMKAIIVDRKHVRASVTRYHLKRLGIKVEVTSSVNMAA 732
Query: 774 CLSQ-----IASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ-SKLFLLANSI 827
LS+ I + + +MILVE++ D T+ NL+ G F+ KL LLA +I
Sbjct: 733 SLSRENGSTIPGNAILPDMILVEKDTLNSDEECGTIHQLNLKLNGNSFKLPKLILLATNI 792
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
+++ + + +VIMKPLR+SM+AA LQ+ +GV N+ R S L+ LL G+
Sbjct: 793 TTAELDKAKAVGFADTVIMKPLRASMVAACLQQVLGVKNQRRGRGVPNGSAFLQSLLCGK 852
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
+ILIVDDN VN +VAA LK++GA V C + GK A +LL PH FDACFMDIQMPEMDG+
Sbjct: 853 RILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLLQLPHNFDACFMDIQMPEMDGF 912
Query: 948 E 948
E
Sbjct: 913 E 913
>gi|359473065|ref|XP_002285117.2| PREDICTED: histidine kinase 4-like [Vitis vinifera]
Length = 1003
Score = 937 bits (2423), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/919 (54%), Positives = 634/919 (68%), Gaps = 59/919 (6%)
Query: 73 QSIGSKR------VRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDER 126
+ +G+KR W K L+ W++ + S +++ M + E+R E L SMCD+R
Sbjct: 17 EQMGTKRGYTFIQANRAWLPKFLVFWIMLMAVFSNFVYNKMDAANKERREEVLVSMCDQR 76
Query: 127 ARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAV 186
ARMLQDQF+VS+NHV A++IL+STFH+ KNPSAIDQ TF YT RTAFERPL SGVAYA
Sbjct: 77 ARMLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGVAYAQ 136
Query: 187 RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 246
RV SERE FEKQ GWTIK M K E SPI +EYAPVIF+Q+TVS++ SLDM+
Sbjct: 137 RVAYSERERFEKQHGWTIKTM---------KREASPIRDEYAPVIFSQETVSYIESLDMM 187
Query: 247 SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 306
SG+EDREN+LRARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP N T +RIEAT G
Sbjct: 188 SGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTVEQRIEATAG 247
Query: 307 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 364
YLGG FD+ESLVE LL QLA Q I VNVYD+TN S P+ MYG D + L+ S L+
Sbjct: 248 YLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGRQYQDVDMSLLHESKLD 307
Query: 365 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 424
FGDPFRKH+M CR+ QK P +++T+ VI LVG+I I KVE+D+H M
Sbjct: 308 FGDPFRKHQMICRYHQKEPTSWTSLTTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQ 367
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+L TQ+DY +TAQA GKA
Sbjct: 368 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQACGKA 427
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L++LINEVLD+AK+E+GKLELEAV FNLR+ILDDVLSLFS KS+ KG+ELAV++SD+VPE
Sbjct: 428 LITLINEVLDRAKIEAGKLELEAVPFNLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPE 487
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL----------- 593
+IGDPGRFRQIITNL+GNS+KFTE+GHIFV V+L E ++ + E
Sbjct: 488 MVIGDPGRFRQIITNLVGNSVKFTERGHIFVQVHLAEHTKALMDAKAETCLNGGSDEGLV 547
Query: 594 ---SSSKNTLSGYPVADRCHSWKGFK--TFNQD-----GSTSPFKSSSADLINLIVSVED 643
S TLSG AD +SW FK F++D + S +++ + L+VSVED
Sbjct: 548 SNGGSQFRTLSGCEAADDQNSWDRFKHLIFDEDLRSDASNIMTVTSEASEKVTLMVSVED 607
Query: 644 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 703
TG GIPL AQ R+FTPFMQ S SR +GGTGIGLSISK LV M G+I F+S P IGST
Sbjct: 608 TGIGIPLRAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIKFISRPQIGST 667
Query: 704 FTFTAVFG----NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 759
F+FTA FG N S + NS + + F+G+KA+VVD RP+RA V++YH++
Sbjct: 668 FSFTADFGRCKKNALSDLKKSNS-------DDLPIGFRGLKAIVVDGRPVRAIVTKYHLK 720
Query: 760 RLGIQVEVVSDQLQCLS------QIASGS-KIINMILVEQEVW--EKDTSVSTLFVNNLR 810
RLGI VEV + + ++ + SGS +MILVE++ W E+D ++ ++ +
Sbjct: 721 RLGILVEVANSIKKAVAITGKNGSLTSGSGNQPDMILVEKDSWISEEDADLNLRLLDWKQ 780
Query: 811 KLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI 870
K+ LLA +ISS+ + + +VIMKPLR+SM+AA LQ+ +G+G K
Sbjct: 781 NRHTLKLPKMILLATNISSAEFDKAKAAGFADTVIMKPLRASMVAACLQQVLGLGKKRQQ 840
Query: 871 -RNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 929
++ S L+ LL G+KIL+VDDN VN +VAA LK++GA V C E GK A +LL P
Sbjct: 841 GKDMLNGSAFLQSLLCGKKILVVDDNKVNRRVAAGALKKFGADVECAESGKAALQLLQLP 900
Query: 930 HQFDACFMDIQMPEMDGYE 948
H FDACFMDIQMPEMDG+E
Sbjct: 901 HNFDACFMDIQMPEMDGFE 919
>gi|224108221|ref|XP_002314765.1| histidine kinase cytokinin receptor [Populus trichocarpa]
gi|190148365|gb|ACE63265.1| cytokinin receptor 1B [Populus trichocarpa]
gi|222863805|gb|EEF00936.1| histidine kinase cytokinin receptor [Populus trichocarpa]
Length = 1006
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/917 (54%), Positives = 648/917 (70%), Gaps = 56/917 (6%)
Query: 73 QSIGSKR------VRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDER 126
Q +G+KR TW K+L+ W++ L SL I+ M + +R+E L SMCD+R
Sbjct: 20 QQMGTKRGYTFIQANRTWLPKILLLWVMAMALFSLTIYNGMDADNRVRRKEVLSSMCDQR 79
Query: 127 ARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAV 186
ARMLQDQFNVS+NHV A++IL+STFH+ KNPSAIDQ TF YT RTAFERPL SGVAYA
Sbjct: 80 ARMLQDQFNVSVNHVHALAILVSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGVAYAQ 139
Query: 187 RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 246
RV+ SER EFE+Q GWTIK M+ EPSPI +EYAPVIF+Q+TVS++ SLDM+
Sbjct: 140 RVVNSERLEFERQHGWTIKTMER---------EPSPIRDEYAPVIFSQETVSYIESLDMM 190
Query: 247 SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 306
SG+EDREN+LRARASGK VLT PFRLL ++ LGV+LTF VYK +LP + T +RIEAT G
Sbjct: 191 SGEEDRENILRARASGKAVLTGPFRLLGSHHLGVVLTFPVYKSKLPPSPTVAQRIEATAG 250
Query: 307 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 364
YLGG FD+ESLVE LL QLA Q I VNVYDITN S + MYG D + L+ S L+
Sbjct: 251 YLGGAFDVESLVENLLGQLAGNQAILVNVYDITNSSDLLIMYGHQNQDGDMSLLHESKLD 310
Query: 365 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 424
FGDPFR+H M CR+ +KAP A++T+ VI LVG+I I KVE+D+H M
Sbjct: 311 FGDPFRRHLMTCRYHEKAPTSWTALTTTFLFFVIGLLVGYILYEAAIHIVKVEDDFHEMQ 370
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
+LK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+L TQ+DY +TAQ GKA
Sbjct: 371 DLKVQAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQVCGKA 430
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L++LINEVLD+AK+E+GKLELEAV F++R+I+DDVLSLFS KS++KG+ELAV++SD+VPE
Sbjct: 431 LIALINEVLDRAKIEAGKLELEAVPFHIRSIVDDVLSLFSEKSRNKGIELAVFVSDKVPE 490
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE------------ 592
++GDPGRFRQIITNL+GNS+KFTE+GH FV V+L E + + + +
Sbjct: 491 IVVGDPGRFRQIITNLVGNSVKFTERGHTFVKVHLYEHAKATTDTKADTCLIGGSNESVL 550
Query: 593 LSSSK--NTLSGYPVADRCHSWKGFK-----TFNQDGSTSPFKSSSA-DLINLIVSVEDT 644
+S S+ TLSG AD +SW FK F D S + S+ A + I L+V VEDT
Sbjct: 551 ISGSQKFKTLSGCEAADDQNSWDVFKHLSDEDFRFDASINVMTSNEASENITLMVCVEDT 610
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GIPL+AQSR+F PF+Q S SR +GGTGIGLSISK LV M G+I F+S P +GSTF
Sbjct: 611 GIGIPLKAQSRVFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGQISFISRPEVGSTF 670
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQ-PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 763
+FTAVF ST ++ +M + + S F+G+KALVVD +P+RA V+RYH++RLGI
Sbjct: 671 SFTAVF----STCKKNAFTKMEKRNAEDLPSGFRGLKALVVDGKPVRAAVTRYHLKRLGI 726
Query: 764 QVEVVSDQLQCLS-------QIASGSKI-INMILVEQEVW-EKDTSVSTLFVNNLRKLGC 814
EVVS+ L+ + + SGSKI +MILVE++ W + VS ++ + ++ G
Sbjct: 727 LAEVVSN-LKVAAGSCGKNGSLTSGSKIQPDMILVEKDTWISGEDGVSNVWKLDWKQNGH 785
Query: 815 GFQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW 873
F+ K+ LLA +I++S + + +VIMKPLR+SM+AA L + +G+G K + +
Sbjct: 786 AFKFPKMILLATNITNSEFDKAKAAGFADTVIMKPLRASMVAACLLQVLGMGKKRS-QGK 844
Query: 874 ELPSMS--LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 931
+P+ S L+ LL G+KIL+VDDN VN +VAA LK++GA V C + GK+A +LL PH
Sbjct: 845 CMPNGSSFLQSLLCGKKILVVDDNRVNRRVAAGALKKFGADVECADSGKEALKLLQLPHT 904
Query: 932 FDACFMDIQMPEMDGYE 948
FDACFMDIQMPEMDG+E
Sbjct: 905 FDACFMDIQMPEMDGFE 921
>gi|370988691|dbj|BAL43559.1| cytokinin receptor histidine protein kinase [Petunia x hybrida]
Length = 985
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/881 (54%), Positives = 628/881 (71%), Gaps = 34/881 (3%)
Query: 87 KVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSI 146
K+ W++F T VS+ +++YM + EKR+E L SMCD+RARMLQDQF+VS+NHV A++I
Sbjct: 36 KMFALWIIFCTFVSIGVYFYMDANQKEKRKEGLVSMCDQRARMLQDQFSVSVNHVHALAI 95
Query: 147 LISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKR 206
L+STFH+ KNPSA+DQ TF YT RTAFERPL SGVAYA RVL SEREEFE++ GWTI+
Sbjct: 96 LVSTFHYEKNPSALDQKTFAEYTARTAFERPLLSGVAYAERVLNSEREEFEREHGWTIRT 155
Query: 207 MDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266
M+ EPSPI +EY+PVIF+Q+TVS++ SLDM+SG+EDREN+LRARASGK VL
Sbjct: 156 MER---------EPSPIRDEYSPVIFSQETVSYIESLDMMSGEEDRENILRARASGKAVL 206
Query: 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLA 326
T PFRLL ++ LGV+LTF VYK +LP N T ER+EAT GYLGG FD+ESLVE LL QLA
Sbjct: 207 TNPFRLLGSHHLGVVLTFPVYKSKLPPNPTEQERVEATAGYLGGAFDVESLVESLLGQLA 266
Query: 327 SKQTIFVNVYDITNLSHPISMYGSN--VSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPW 384
+ I VNVYD+TN S + MYG D L VS L+FGDPFRKHEM CR+ AP
Sbjct: 267 ANHPIIVNVYDVTNSSDSLIMYGHQNPKGDASLKHVSKLDFGDPFRKHEMICRYLHDAPI 326
Query: 385 PLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATV 444
A++T+I I I L+G+ + + I KVE+D+H M ELK +AEAADVAKSQFLATV
Sbjct: 327 SRGAVTTAIFIFTIFVLIGYTGYKSASHINKVEDDFHKMQELKVQAEAADVAKSQFLATV 386
Query: 445 SHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504
SHEIRTPMNG+LGML +L+DT+L TQ+DY +TAQA GK+L++LINEVLD+AK+E+GKLE
Sbjct: 387 SHEIRTPMNGILGMLALLLDTDLRSTQRDYAQTAQACGKSLITLINEVLDRAKIEAGKLE 446
Query: 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNS 564
LEAV F+LR+ILDDVLSLFS +S+ KGVELAV++SD+VP ++GDPGRFRQ+ITNL+GNS
Sbjct: 447 LEAVPFDLRSILDDVLSLFSDESRRKGVELAVFVSDKVPGIVMGDPGRFRQVITNLVGNS 506
Query: 565 IKFTEKGHIFVTVYLVEEVVDSIEVET----ELSSSKNTLSGYPVADRCHSWKGFK-TFN 619
+KFTE+GHIFV V+L E+ D ++ T E S TLSGY A ++W K T
Sbjct: 507 VKFTEQGHIFVQVHLAEQTKDGVKNNTCLTGESESVYETLSGYETAASQNTWDSLKHTIA 566
Query: 620 QDG--STSPFKSSSADL---INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674
+G S K ++ DL + ++VSVEDTG GIP++AQ R+FTPFMQ S SR +GGT
Sbjct: 567 DNGLYYKSATKEANDDLSQNVTVMVSVEDTGIGIPIQAQDRVFTPFMQADSSTSRNYGGT 626
Query: 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS 734
GIGLSISK LV M G+IGF+S P IGSTF+FT N S + + + +
Sbjct: 627 GIGLSISKCLVELMGGQIGFISRPQIGSTFSFTL---NLLRCEKYAVSDLKKSHSDDLPT 683
Query: 735 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS------QIASGSKIINMI 788
F+G+ A++VD +P+RA V+ YH++RLGI+ EV + + + S + ++MI
Sbjct: 684 SFKGLNAIIVDGKPVRAAVTGYHLKRLGIRAEVAGSIKKAAAALGRNGSVVSNDRKLDMI 743
Query: 789 LVEQEVWEKDTSVSTLFVNNLRKLGCGFQ-SKLFLLANSISSSRANTSTDGVSIPSVIMK 847
LVE+E+W + L + +++ G ++ K+ LLA ++++S + V +VIMK
Sbjct: 744 LVEKELWLSEDVDLNLHLPDIKPNGHVYKIPKMILLATNLTNSE-DEKAKAVGF-AVIMK 801
Query: 848 PLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLK 907
PLR+SM+AA L++ +G+GNK ++ SLR LL G+KIL+VDDN VN +VAA LK
Sbjct: 802 PLRASMMAACLKQLIGIGNKREGKDM-CNGSSLRGLLCGKKILVVDDNLVNRRVAAGALK 860
Query: 908 RYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
++GA V C + GK A LL PH FDACFMDIQMPEMDG+E
Sbjct: 861 KFGADVECADSGKAALSLLQIPHNFDACFMDIQMPEMDGFE 901
>gi|110288960|gb|AAP53311.2| histidine kinase 3, putative, expressed [Oryza sativa Japonica Group]
Length = 1186
Score = 932 bits (2409), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/906 (54%), Positives = 640/906 (70%), Gaps = 54/906 (5%)
Query: 77 SKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNV 136
S ++ W ++ L+ +L S+WIF M + +R E L +MCDERARMLQDQFNV
Sbjct: 232 SVKISRKWSKRALLLGVLVGLCSSVWIFSSMHADVVARRIENLENMCDERARMLQDQFNV 291
Query: 137 SMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEF 196
SMNHV A++IL+STFHHGKNPSAIDQ TF +T RT FERPL SGVAYA++VL SERE F
Sbjct: 292 SMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTTFERPLMSGVAYALKVLHSERELF 351
Query: 197 EKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKED 251
E++ GW IK+M+T + + VH K +PSP+++EYAPVIF+Q+TV H+IS+DM+SGKED
Sbjct: 352 EQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYAPVIFSQETVKHIISVDMMSGKED 411
Query: 252 RENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGI 311
R+N+LR+RA+GKG LTAPF LLK+N LGV+LTF VYK +LP +ATP ERIEAT GYLG
Sbjct: 412 RDNILRSRATGKGALTAPFPLLKSNHLGVVLTFTVYKYDLPPDATPEERIEATLGYLGAS 471
Query: 312 FDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNV--SDDGLWLVSTLNFGDPF 369
FD+ SLVE+LL QLASKQ I V +YDITN ++P MY S+V SDD +S ++FGDP
Sbjct: 472 FDVPSLVERLLEQLASKQKIVVRLYDITNHTYPTKMYDSDVIASDD--LHISNIDFGDPT 529
Query: 370 RKHEMRCRFKQKA--PWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELK 427
RKH M CRFK PW + IS+++ I+V+ LVG+I AT+N + + E++Y M +LK
Sbjct: 530 RKHVMHCRFKHAPSLPWSAIMISSAVAIIVL--LVGYIIYATLNSLEEAEDNYTTMRDLK 587
Query: 428 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 487
+AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD TQ+D+V TAQ SGK+L++
Sbjct: 588 GRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQRDFVVTAQESGKSLIN 647
Query: 488 LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 547
LINEVLD AK+ESGK+ELEAV F++R ILD+V+SLFS KS KG+ELAV +SD+VP+ LI
Sbjct: 648 LINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVPDVLI 707
Query: 548 GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSK---------- 597
GDP RFRQIITNL+GNS+KFTE+GHIF+ V+L+EEV +E + S
Sbjct: 708 GDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEVTANSKNT 767
Query: 598 ---NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
NTLSG VA+ + + F+ F S + D +NL+V+VEDTG GI +AQ+
Sbjct: 768 MPYNTLSGLEVANNRKTLESFRMFKD-------SSDAIDSVNLLVTVEDTGIGITKDAQT 820
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
RIFTPFMQ S SRT+GGTGIGLSI+K LV M GEIGFVS P + STF+FTA+F
Sbjct: 821 RIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGVSSTFSFTAIF---- 876
Query: 715 STSNEHNSQQMNNQ-PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
N + + P +FQGM+ALVVD R RA+V+ YH++RLGIQ ++ +
Sbjct: 877 -KENRKDPGDIKRYCPEPTPPDFQGMRALVVDGRCARAEVTMYHLRRLGIQCDLAATSES 935
Query: 774 CLSQI-----ASGSKIINMILVEQEVWEKDTSVSTL-FVNNLRKLGC--GFQS--KLFLL 823
LS + +S +NM+LV++E W +D+ ++ + +LR G +Q+ K FLL
Sbjct: 936 ALSALLESCNSSVKSSLNMVLVDKEAWGEDSGLAFFRCLIDLRLKGTLKSWQTMPKFFLL 995
Query: 824 ANSISSSRANT-STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH 882
A SI+ + ++ G S + I KPLR S +AA L +A+GVG G R S+ LR
Sbjct: 996 AGSITPADSDCLRLAGYS--NSIRKPLRLSTVAACLSKALGVGLTG--RRSRDNSLVLRS 1051
Query: 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
+L G+ IL+VDDN VN VAA LK+YGA V CV+ GK+A L PPH+FDACFMD+QMP
Sbjct: 1052 VLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHKFDACFMDVQMP 1111
Query: 943 EMDGYE 948
EMDG+E
Sbjct: 1112 EMDGFE 1117
>gi|118790684|tpd|FAA00249.1| TPA: histidine kinase [Oryza sativa Japonica Group]
Length = 1187
Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/906 (54%), Positives = 640/906 (70%), Gaps = 54/906 (5%)
Query: 77 SKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNV 136
S ++ W ++ L+ +L S+WIF M + +R E L +MCDERARMLQDQFNV
Sbjct: 216 SVKISRKWSKRALLLGVLVGLCSSVWIFSSMHADVVARRIENLENMCDERARMLQDQFNV 275
Query: 137 SMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEF 196
SMNHV A++IL+STFHHGKNPSAIDQ TF +T RT FERPL SGVAYA++VL SERE F
Sbjct: 276 SMNHVHALAILVSTFHHGKNPSAIDQKTFEDFTARTTFERPLMSGVAYALKVLHSERELF 335
Query: 197 EKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKED 251
E++ GW IK+M+T + + VH K +PSP+++EYAPVIF+Q+TV H+IS+DM+SGKED
Sbjct: 336 EQKLGWKIKKMETEDQSLVHDYNPEKLQPSPVQDEYAPVIFSQETVKHIISVDMMSGKED 395
Query: 252 RENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGI 311
R+N+LR+RA+GKG LTAPF LLK+N LGV+LTF VYK +LP +ATP ERIEAT GYLG
Sbjct: 396 RDNILRSRATGKGALTAPFPLLKSNHLGVVLTFTVYKYDLPPDATPEERIEATLGYLGAS 455
Query: 312 FDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNV--SDDGLWLVSTLNFGDPF 369
FD+ SLVE+LL QLASKQ I V +YDITN ++P MY S+V SDD +S ++FGDP
Sbjct: 456 FDVPSLVERLLEQLASKQKIVVRLYDITNHTYPTKMYDSDVIASDD--LHISNIDFGDPT 513
Query: 370 RKHEMRCRFKQKA--PWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELK 427
RKH M CRFK PW + IS+++ I+V+ LVG+I AT+N + + E++Y M +LK
Sbjct: 514 RKHVMHCRFKHAPSLPWSAIMISSAVAIIVL--LVGYIIYATLNSLEEAEDNYTTMRDLK 571
Query: 428 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 487
+AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD TQ+D+V TAQ SGK+L++
Sbjct: 572 GRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQRDFVVTAQESGKSLIN 631
Query: 488 LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 547
LINEVLD AK+ESGK+ELEAV F++R ILD+V+SLFS KS KG+ELAV +SD+VP+ LI
Sbjct: 632 LINEVLDLAKIESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVPDVLI 691
Query: 548 GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSK---------- 597
GDP RFRQIITNL+GNS+KFTE+GHIF+ V+L+EEV +E + S
Sbjct: 692 GDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEVTANSKNT 751
Query: 598 ---NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
NTLSG VA+ + + F+ F S + D +NL+V+VEDTG GI +AQ+
Sbjct: 752 MPYNTLSGLEVANNRKTLESFRMFKD-------SSDAIDSVNLLVTVEDTGIGITKDAQT 804
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
RIFTPFMQ S SRT+GGTGIGLSI+K LV M GEIGFVS P + STF+FTA+F
Sbjct: 805 RIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGVSSTFSFTAIF---- 860
Query: 715 STSNEHNSQQMNNQ-PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
N + + P +FQGM+ALVVD R RA+V+ YH++RLGIQ ++ +
Sbjct: 861 -KENRKDPGDIKRYCPEPTPPDFQGMRALVVDGRCARAEVTMYHLRRLGIQCDLAATSES 919
Query: 774 CLSQI-----ASGSKIINMILVEQEVWEKDTSVSTL-FVNNLRKLGC--GFQS--KLFLL 823
LS + +S +NM+LV++E W +D+ ++ + +LR G +Q+ K FLL
Sbjct: 920 ALSALLESCNSSVKSSLNMVLVDKEAWGEDSGLAFFRCLIDLRLKGTLKSWQTMPKFFLL 979
Query: 824 ANSISSSRANT-STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH 882
A SI+ + ++ G S + I KPLR S +AA L +A+GVG G R S+ LR
Sbjct: 980 AGSITPADSDCLRLAGYS--NSIRKPLRLSTVAACLSKALGVGLTG--RRSRDNSLVLRS 1035
Query: 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
+L G+ IL+VDDN VN VAA LK+YGA V CV+ GK+A L PPH+FDACFMD+QMP
Sbjct: 1036 VLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHKFDACFMDVQMP 1095
Query: 943 EMDGYE 948
EMDG+E
Sbjct: 1096 EMDGFE 1101
>gi|255581802|ref|XP_002531702.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
gi|223528678|gb|EEF30693.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
Length = 922
Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/854 (56%), Positives = 609/854 (71%), Gaps = 48/854 (5%)
Query: 123 CDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGV 182
C+E+A++L FNVS + +QA L+S F S DQ TF YTERTAFERPLTSGV
Sbjct: 9 CEEKAQVLLQHFNVSKSQLQA---LVSLF------SESDQKTFGEYTERTAFERPLTSGV 59
Query: 183 AYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTV 237
AYA++VL SERE+FEK+ GWTI++M+T + V K +P+PI++EYAPVIF+Q+TV
Sbjct: 60 AYALKVLHSEREQFEKKHGWTIRKMETEDQTLVQDCIPEKLDPAPIQDEYAPVIFSQETV 119
Query: 238 SHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATP 297
+H++S+DM+SGKEDREN+LRARASGKGVLT+PF+LLK+N LGV+LTFAVY +LP NATP
Sbjct: 120 AHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNADLPLNATP 179
Query: 298 NERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGL 357
ERIEAT GYLG +D+ SLVEKLLHQLASKQTI VNVYD TN S PI MYG++ D GL
Sbjct: 180 EERIEATVGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNASAPILMYGTDYVDTGL 239
Query: 358 WLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVE 417
+S L+FGDP R+HEM C FKQK P AI+ S+G+LVI LVGHIF A ++RIAKVE
Sbjct: 240 LHISNLDFGDPMRRHEMHCSFKQKPTLPWTAINASVGVLVITLLVGHIFYAAISRIAKVE 299
Query: 418 EDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRT 477
EDY MM LK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDT+LD Q D+ +T
Sbjct: 300 EDYREMMMLKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDANQMDFAQT 359
Query: 478 AQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVY 537
A ASGK L+SLINEVLDQAK+ESG+LELEAVSF+LR++LD++LSLFSGKS +KG+ELA+Y
Sbjct: 360 AHASGKDLISLINEVLDQAKIESGRLELEAVSFDLRSVLDNILSLFSGKSNEKGIELAIY 419
Query: 538 ISDRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL--- 593
+S +VPE +IGDPGRFRQIITNL+GNS+KFT +KGHIFV+V+L +EV ++ V +
Sbjct: 420 VSSQVPEVVIGDPGRFRQIITNLVGNSVKFTRDKGHIFVSVHLADEVRSTLNVRDAVLKQ 479
Query: 594 ---------SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644
+ NTLSG PV DR SW FK N + +++I L+V+VEDT
Sbjct: 480 GLNLVQDMQNEIDNTLSGCPVVDRWKSWANFKRLNSKDTM-----EESEMIRLLVTVEDT 534
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GIPL+A SRIF+PFMQ S SRT+GGTGIGLSISK LV M GEIGFVS P GSTF
Sbjct: 535 GVGIPLDAHSRIFSPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGTGSTF 594
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 764
+FTA F G S + Q + P + E QG +ALV+D R IRA+V+RYH+QRLGI
Sbjct: 595 SFTASFRKGDLRSLDTKWQPYD--PTGL--ELQGWRALVIDKRSIRAEVTRYHLQRLGIT 650
Query: 765 VEVVSDQLQCLSQIASGSKI-----INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ-- 817
++ S S + G ++L++++ W +T + + K G +
Sbjct: 651 ADMASSLKSACSYQSGGRHTSAPADFGLVLIDKDAWHNETGFAFRQLLKESKQNGGTEMI 710
Query: 818 ---SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 874
K+FLLA +I+ + ++IMKPLR S+L + Q A+G G K + N
Sbjct: 711 IDLPKIFLLATTINPEERRELLSAGLVDNIIMKPLRLSVLFSCFQEAIGSGKKSQV-NRR 769
Query: 875 LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 934
PS +L++LL ++IL+VDDN VN +VA LK+YGA V CVE GK+A ELL PPH FDA
Sbjct: 770 KPS-TLQNLLREKRILVVDDNKVNRRVAEGALKKYGAIVTCVESGKEALELLKPPHTFDA 828
Query: 935 CFMDIQMPEMDGYE 948
CFMD MPE+DG+E
Sbjct: 829 CFMDRHMPELDGFE 842
>gi|88319749|emb|CAF31355.1| putative histidine kinase [Cucurbita maxima]
Length = 981
Score = 927 bits (2395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/903 (54%), Positives = 624/903 (69%), Gaps = 53/903 (5%)
Query: 79 RVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSM 138
+ W RK L+ W++ +S+ I+ M + +R E LGSMC++RARMLQDQFNVS+
Sbjct: 27 QANRAWLRKYLLFWIMGMAFISMLIYNGMDADIKVRRNEVLGSMCEQRARMLQDQFNVSV 86
Query: 139 NHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEK 198
NHV A+++L+STFH+ KNPSAIDQ TF YT RTAFERPL SGVAYA RV+ SER+ FEK
Sbjct: 87 NHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIHSERDIFEK 146
Query: 199 QQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRA 258
Q GW I+ M+ EPSP +EYAPVIF+Q+TVS++ SLDM+SG+EDREN+LRA
Sbjct: 147 QHGWMIRTMEK---------EPSPDRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRA 197
Query: 259 RASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLV 318
RA+GK VLT PFRLL ++ LGV+LTF VYK +LPS T ERIEAT GY+GG FD+ESLV
Sbjct: 198 RATGKAVLTRPFRLLGSHHLGVVLTFPVYKFKLPSIPTEEERIEATAGYVGGAFDVESLV 257
Query: 319 EKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLNFGDPFRKHEMRC 376
E LL QLA Q I VNVYD+TN S + MYG D L L S+L+FGDPFRKH M C
Sbjct: 258 ENLLGQLAGNQAILVNVYDVTNSSDLLVMYGHQYQDGDLSLSHESSLDFGDPFRKHLMIC 317
Query: 377 RFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVA 436
R++Q+AP A++T+ VI LVG+I I KVE+D+H M LK +AEAADVA
Sbjct: 318 RYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQVLKVRAEAADVA 377
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KSQFLATVSHEIRTPMNG+LGML +L+DT+L TQ+DY +TAQA GKAL++LINEVLD+A
Sbjct: 378 KSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRA 437
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+GKLELEAV F++R+ILDDVLSLFS KS+ KG+ELAV++SD+VPE +IGDPGRFRQI
Sbjct: 438 KIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQI 497
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE--TELSSSK---------NTLSGYPV 605
ITNL+GNS+KFTE+GHIFV V+L E S++ E +S S TLSG
Sbjct: 498 ITNLVGNSVKFTERGHIFVKVHLAENSKVSMDSEYVNGISDSGLFVLDGREFQTLSGREA 557
Query: 606 ADRCHSWKGFKTF--------NQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 657
AD +SW FK N + S + D + L+VSVEDTG GI L AQ+R+F
Sbjct: 558 ADDQNSWDNFKHLIADDNFQSNAASNNSAVTNKGCDHVTLMVSVEDTGIGILLHAQNRVF 617
Query: 658 TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTS 717
TPFMQ S SR +GGTGIGLSISK LV M G+I F+S P IGSTF+FTAVFG
Sbjct: 618 TPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVFGKC---- 673
Query: 718 NEHNSQQMNNQPNS--VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS--DQLQ 773
+ NS +PNS + F+GMKA+VVD + +RA V+RYH++RLGI VEV + +
Sbjct: 674 -KKNSMNDMKKPNSEELPPSFRGMKAIVVDSKHVRASVTRYHLKRLGIIVEVTNSINMAA 732
Query: 774 CL-----SQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ-SKLFLLANSI 827
L S + + + +MILVE+++ D + N + G + KL LLA +I
Sbjct: 733 SLFRENGSTLPRNTILPDMILVEKDILNSDEECGIIHHLNWKPNGSSVKFPKLILLATNI 792
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS--LRHLLL 885
+++ + + +VIMKPLR++M+AA LQ+ +GV +N P+ S L+ LL
Sbjct: 793 ATAELDKARAAGFADTVIMKPLRATMVAACLQQVLGV------KNQRRPNGSAFLQSLLC 846
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
G++ILIVDDN VN +VAA LK++GA V C + GK A +LL PH FDACFMDIQMPEMD
Sbjct: 847 GKRILIVDDNRVNRRVAAGALKKFGADVECADSGKSALKLLQLPHNFDACFMDIQMPEMD 906
Query: 946 GYE 948
G+E
Sbjct: 907 GFE 909
>gi|449445312|ref|XP_004140417.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
Length = 1004
Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/917 (53%), Positives = 638/917 (69%), Gaps = 51/917 (5%)
Query: 71 YYQSIGSKR------VRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCD 124
+ + IGSK+ + W K L+ W+L +S+ I+ M + +R+E LGSMCD
Sbjct: 16 FNEQIGSKKGSTFIQAKRDWLPKFLLLWVLLVAFISMLIYKGMDADNKVRRKEVLGSMCD 75
Query: 125 ERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAY 184
+RARMLQDQF+VS+NHV A++ILISTFH+ KN SAIDQ TF YT RTAFERPL SGVA+
Sbjct: 76 QRARMLQDQFSVSVNHVHALAILISTFHYSKNVSAIDQETFAEYTARTAFERPLLSGVAF 135
Query: 185 AVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLD 244
A RV+ ERE+FEKQ GWTIK M+ EPSPI++EYAPVIF+Q+TVS++ SLD
Sbjct: 136 AQRVVHFEREKFEKQHGWTIKTMER---------EPSPIKDEYAPVIFSQETVSYIESLD 186
Query: 245 MLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEAT 304
M+SG+EDREN+LR+R +GK VLT+PFRLL ++ LGV+LT VYK +LP N T +ER AT
Sbjct: 187 MMSGEEDRENILRSRETGKAVLTSPFRLLGSHHLGVVLTIPVYKTKLPLNPTMDERTRAT 246
Query: 305 DGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--ST 362
GYLGG FD+ESLVE LL QLA Q I VNVYD+TN S P+ MYG D + L S
Sbjct: 247 AGYLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNYSDPLVMYGHQYEDGDMSLSHESK 306
Query: 363 LNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHG 422
L+FGDPFRKH+M CR+ QKAP A++T+ VI LVG+I I KVE+D+H
Sbjct: 307 LDFGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHE 366
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
M ELK +AEAAD+AKSQFLATVSHEIRTPMNG+LGML +L+DTEL TQ+DY +TAQA G
Sbjct: 367 MQELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACG 426
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
KAL++LINEVLD+AK+E+GKLELEAV F+LR ILDDVLSLFS KS+ KGVELAV++SD+V
Sbjct: 427 KALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKV 486
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN---- 598
PE ++GDPGRFRQ+ITNL+GNS+KFTE GHIFV V L E+ + S +++E + N
Sbjct: 487 PEIVMGDPGRFRQVITNLVGNSVKFTEHGHIFVKVQLAEQSMVSTNIKSETHVNGNSEDG 546
Query: 599 ---------TLSGYPVADRCHSWKGFK-----TFNQDGSTSPFKSSS-ADLINLIVSVED 643
TLSG+ AD +SW FK F +GS++ ++ +D++ +++SVED
Sbjct: 547 ASHNKHQFETLSGFEAADNQNSWDTFKHLANEEFQPNGSSNLMATNEISDIVTVMISVED 606
Query: 644 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 703
TG GIPL AQ R+F FMQ S SR +GGTGIGL ISK LV M G+I FVS P +GST
Sbjct: 607 TGIGIPLSAQGRVFMRFMQADSSTSRNYGGTGIGLDISKCLVELMGGQINFVSKPQVGST 666
Query: 704 FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 763
F+FTAVFG + N ++ N + + S F+G+KA+VVD +P+RA V++YH++RLGI
Sbjct: 667 FSFTAVFGRCEKKATV-NIKKSNLE--ELPSAFRGLKAVVVDGKPVRAAVTKYHLKRLGI 723
Query: 764 QVEVVSD-----QLQCLSQIASGSKII--NMILVEQEVW---EKDTSVSTLFVNNLRKLG 813
VEV S L + S I+ ++IL+E++++ E+ S + L + ++ G
Sbjct: 724 LVEVASSVKMAAALWGKNGSVRSSNILQPDVILLEKDIFISNEECGSSNLLHQLDWKQNG 783
Query: 814 CGFQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI-R 871
+ KL LLA +S+ + + + ++IMKPLR+SM+ A LQ+ +G G K + +
Sbjct: 784 HTLKLPKLILLATCMSTVEFDKAKEMGFSDTLIMKPLRASMIGACLQQVLGSGKKRQLGK 843
Query: 872 NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 931
+ S L+ LL G+KIL+VDDN VN +VAA LK++GA V CVE GK A LL PH
Sbjct: 844 DMANGSNFLKGLLCGKKILVVDDNKVNRRVAAGALKKFGADVECVESGKAALALLQLPHS 903
Query: 932 FDACFMDIQMPEMDGYE 948
FDACFMDIQMPEMDG+E
Sbjct: 904 FDACFMDIQMPEMDGFE 920
>gi|110331743|dbj|BAE97709.1| cytokinin receptor histidine kinase [Oryza sativa Japonica Group]
gi|222612690|gb|EEE50822.1| hypothetical protein OsJ_31230 [Oryza sativa Japonica Group]
Length = 942
Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/876 (55%), Positives = 625/876 (71%), Gaps = 54/876 (6%)
Query: 107 MSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFT 166
M + +R E L +MCDERARMLQDQFNVSMNHV A++IL+STFHHGKNPSAIDQ TF
Sbjct: 1 MHADVVARRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFE 60
Query: 167 RYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVH-----KDEPS 221
+T RT FERPL SGVAYA++VL SERE FE++ GW IK+M+T + + VH K +PS
Sbjct: 61 DFTARTTFERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPS 120
Query: 222 PIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVI 281
P+++EYAPVIF+Q+TV H+IS+DM+SGKEDR+N+LR+RA+GKG LTAPF LLK+N LGV+
Sbjct: 121 PVQDEYAPVIFSQETVKHIISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLGVV 180
Query: 282 LTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNL 341
LTF VYK +LP +ATP ERIEAT GYLG FD+ SLVE+LL QLASKQ I V +YDITN
Sbjct: 181 LTFTVYKYDLPPDATPEERIEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDITNH 240
Query: 342 SHPISMYGSNV--SDDGLWLVSTLNFGDPFRKHEMRCRFKQKA--PWPLLAISTSIGILV 397
++P MY S+V SDD +S ++FGDP RKH M CRFK PW + IS+++ I+V
Sbjct: 241 TYPTKMYDSDVIASDD--LHISNIDFGDPTRKHVMHCRFKHAPSLPWSAIMISSAVAIIV 298
Query: 398 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
+ LVG+I AT+N + + E++Y M +LK +AEAADVAKSQFLATVSHEIRTPMNGVLG
Sbjct: 299 L--LVGYIIYATLNSLEEAEDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLG 356
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
ML MLMDTELD TQ+D+V TAQ SGK+L++LINEVLD AK+ESGK+ELEAV F++R ILD
Sbjct: 357 MLQMLMDTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDILD 416
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
+V+SLFS KS KG+ELAV +SD+VP+ LIGDP RFRQIITNL+GNS+KFTE+GHIF+ V
Sbjct: 417 NVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRV 476
Query: 578 YLVEEVVDSIEVETELSSSK-------------NTLSGYPVADRCHSWKGFKTFNQDGST 624
+L+EEV +E + S NTLSG VA+ + + F+ F
Sbjct: 477 HLIEEVKRKMEALDDTSPENIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKD---- 532
Query: 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 684
S + D +NL+V+VEDTG GI +AQ+RIFTPFMQ S SRT+GGTGIGLSI+K L
Sbjct: 533 ---SSDAIDSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRL 589
Query: 685 VGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ-PNSVSSEFQGMKALV 743
V M GEIGFVS P + STF+FTA+F N + + P +FQGM+ALV
Sbjct: 590 VELMGGEIGFVSKPGVSSTFSFTAIF-----KENRKDPGDIKRYCPEPTPPDFQGMRALV 644
Query: 744 VDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI-----ASGSKIINMILVEQEVWEKD 798
VD R RA+V+ YH++RLGIQ ++ + LS + +S +NM+LV++E W +D
Sbjct: 645 VDGRCARAEVTMYHLRRLGIQCDLAATSESALSALLESCNSSVKSSLNMVLVDKEAWGED 704
Query: 799 TSVSTL-FVNNLRKLGC--GFQS--KLFLLANSISSSRANT-STDGVSIPSVIMKPLRSS 852
+ ++ + +LR G +Q+ K FLLA SI+ + ++ G S + I KPLR S
Sbjct: 705 SGLAFFRCLIDLRLKGTLKSWQTMPKFFLLAGSITPADSDCLRLAGYS--NSIRKPLRLS 762
Query: 853 MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAA 912
+AA L +A+GVG G R S+ LR +L G+ IL+VDDN VN VAA LK+YGA
Sbjct: 763 TVAACLSKALGVGLTG--RRSRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAI 820
Query: 913 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
V CV+ GK+A L PPH+FDACFMD+QMPEMDG+E
Sbjct: 821 VTCVDSGKEAISRLQPPHKFDACFMDVQMPEMDGFE 856
>gi|162461250|ref|NP_001104867.1| histidine kinase3 [Zea mays]
gi|38347688|dbj|BAD01585.1| histidine kinase 3 [Zea mays]
Length = 1201
Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/906 (53%), Positives = 628/906 (69%), Gaps = 53/906 (5%)
Query: 77 SKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNV 136
S ++ W ++ L+ +LF SL IF M + +R E L +MCDERARMLQDQFNV
Sbjct: 232 STKISRKWSKRALLIGVLFGLCSSLCIFSCMYADVVARRIENLANMCDERARMLQDQFNV 291
Query: 137 SMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEF 196
SMNHV A++IL+S+FHHGK+PSAIDQ TF +T RT FERPL SGVAYA++VL +ER++F
Sbjct: 292 SMNHVHALAILVSSFHHGKDPSAIDQKTFEDFTARTTFERPLMSGVAYALKVLHNERQQF 351
Query: 197 EKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKED 251
E+Q GW IK+M+ + + VH K EPSP+++EYAPVIF+Q+TV H+IS+DM+SGKED
Sbjct: 352 EEQHGWKIKKMEDGDQSLVHDYNLEKLEPSPVQDEYAPVIFSQETVKHIISVDMMSGKED 411
Query: 252 RENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGI 311
+N+LR+R++GKG LT+PF+LLK+N LGV+LTF VYK +LP NATP ERI AT GYLG
Sbjct: 412 HDNILRSRSTGKGALTSPFKLLKSNHLGVVLTFTVYKYDLPPNATPQERIHATLGYLGAS 471
Query: 312 FDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRK 371
FD+ SLV+KLL QLASK+ I VN+YD TN + PI MYGS+ + G +S+++FGDP RK
Sbjct: 472 FDVPSLVDKLLEQLASKRKIVVNLYDTTNHTSPIEMYGSDFTPSGDLHISSIDFGDPTRK 531
Query: 372 HEMRCRFKQKA--PWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKK 429
HEM CRFK + PW + IST++ I+V+ LVGHI AT+N + K E DY M ELK +
Sbjct: 532 HEMHCRFKHEPSLPWSAIIISTAVAIIVL--LVGHIIYATLNSLEKAEHDYRVMRELKGQ 589
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489
AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD TQQD+V TAQ SGK L++LI
Sbjct: 590 AEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQQDFVVTAQESGKVLINLI 649
Query: 490 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 549
NEVLD AK+ESG++ELEAV F++R ILD+V+SLF KSQ KG+ELAV +SD+VP+ LIGD
Sbjct: 650 NEVLDLAKIESGRIELEAVPFDVRDILDNVISLFYEKSQAKGIELAVLVSDQVPDVLIGD 709
Query: 550 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV-------------DSIEVETELSSS 596
P RFRQIITNL+GNS+KFTE+GHIFV V+LV+E+ I +++ S
Sbjct: 710 PWRFRQIITNLVGNSMKFTEQGHIFVQVHLVKELSRKGNNFCDVSAHNREILYDSDNSML 769
Query: 597 KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSA--DLINLIVSVEDTGQGIPLEAQS 654
NTLSG VAD SW+ + F FK+S+ D I L V VEDTG GI +AQ
Sbjct: 770 WNTLSGLEVAD---SWRSLENFTM------FKNSNGETDTIRLAVRVEDTGIGITKDAQM 820
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
RIFTPFMQ S SRT+GGTGIGLSI+K LV M GEIGF S +GSTF+FTA+F
Sbjct: 821 RIFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSGVGSTFSFTAIFKENR 880
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---- 770
+ ++ ++P + +FQGM+AL++D R RA+V+ YH++RLGIQ +V+
Sbjct: 881 GCPGD--MKRYYSEPTPL--DFQGMRALIIDGRSARAEVTMYHLRRLGIQCSLVATSESE 936
Query: 771 --QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL--FVNNLRKLGCGFQS---KLFLL 823
+ S +M+LV+ E W K + ++ FV+ K F K LL
Sbjct: 937 SASSALMKACTSSKNNPDMVLVDTEAWGKGSGLAFYHRFVDCQLKGAHKFSQPMPKTILL 996
Query: 824 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG-NKGNIRNWELPSMSLRH 882
+SIS ++ I KPLR S + A L++ +GVG + R+ S+ L+
Sbjct: 997 GSSISPVESDY-LRLTGFGDCIRKPLRLSTIVACLRKTLGVGVTRQQSRDQ---SLVLQS 1052
Query: 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
+L G++IL+VDDN VN KVAA LK+YG+ V CV+ G A ++L PPH FDACFMD+QMP
Sbjct: 1053 VLTGKQILVVDDNAVNRKVAAGSLKKYGSTVTCVDSGSDAIDMLKPPHTFDACFMDVQMP 1112
Query: 943 EMDGYE 948
EMDG+E
Sbjct: 1113 EMDGFE 1118
>gi|20279446|gb|AAM18726.1|AC092548_4 putative histidine kinase [Oryza sativa Japonica Group]
Length = 925
Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/876 (55%), Positives = 625/876 (71%), Gaps = 54/876 (6%)
Query: 107 MSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFT 166
M + +R E L +MCDERARMLQDQFNVSMNHV A++IL+STFHHGKNPSAIDQ TF
Sbjct: 1 MHADVVARRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFE 60
Query: 167 RYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVH-----KDEPS 221
+T RT FERPL SGVAYA++VL SERE FE++ GW IK+M+T + + VH K +PS
Sbjct: 61 DFTARTTFERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPS 120
Query: 222 PIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVI 281
P+++EYAPVIF+Q+TV H+IS+DM+SGKEDR+N+LR+RA+GKG LTAPF LLK+N LGV+
Sbjct: 121 PVQDEYAPVIFSQETVKHIISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLGVV 180
Query: 282 LTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNL 341
LTF VYK +LP +ATP ERIEAT GYLG FD+ SLVE+LL QLASKQ I V +YDITN
Sbjct: 181 LTFTVYKYDLPPDATPEERIEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDITNH 240
Query: 342 SHPISMYGSNV--SDDGLWLVSTLNFGDPFRKHEMRCRFKQKA--PWPLLAISTSIGILV 397
++P MY S+V SDD +S ++FGDP RKH M CRFK PW + IS+++ I+V
Sbjct: 241 TYPTKMYDSDVIASDD--LHISNIDFGDPTRKHVMHCRFKHAPSLPWSAIMISSAVAIIV 298
Query: 398 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
+ LVG+I AT+N + + E++Y M +LK +AEAADVAKSQFLATVSHEIRTPMNGVLG
Sbjct: 299 L--LVGYIIYATLNSLEEAEDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLG 356
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
ML MLMDTELD TQ+D+V TAQ SGK+L++LINEVLD AK+ESGK+ELEAV F++R ILD
Sbjct: 357 MLQMLMDTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDILD 416
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
+V+SLFS KS KG+ELAV +SD+VP+ LIGDP RFRQIITNL+GNS+KFTE+GHIF+ V
Sbjct: 417 NVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRV 476
Query: 578 YLVEEVVDSIEVETELSSSK-------------NTLSGYPVADRCHSWKGFKTFNQDGST 624
+L+EEV +E + S NTLSG VA+ + + F+ F
Sbjct: 477 HLIEEVKRKMEALDDTSPENIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKD---- 532
Query: 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 684
S + D +NL+V+VEDTG GI +AQ+RIFTPFMQ S SRT+GGTGIGLSI+K L
Sbjct: 533 ---SSDAIDSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRL 589
Query: 685 VGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ-PNSVSSEFQGMKALV 743
V M GEIGFVS P + STF+FTA+F N + + P +FQGM+ALV
Sbjct: 590 VELMGGEIGFVSKPGVSSTFSFTAIF-----KENRKDPGDIKRYCPEPTPPDFQGMRALV 644
Query: 744 VDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI-----ASGSKIINMILVEQEVWEKD 798
VD R RA+V+ YH++RLGIQ ++ + LS + +S +NM+LV++E W +D
Sbjct: 645 VDGRCARAEVTMYHLRRLGIQCDLAATSESALSALLESCNSSVKSSLNMVLVDKEAWGED 704
Query: 799 TSVSTL-FVNNLRKLGC--GFQS--KLFLLANSISSSRANT-STDGVSIPSVIMKPLRSS 852
+ ++ + +LR G +Q+ K FLLA SI+ + ++ G S + I KPLR S
Sbjct: 705 SGLAFFRCLIDLRLKGTLKSWQTMPKFFLLAGSITPADSDCLRLAGYS--NSIRKPLRLS 762
Query: 853 MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAA 912
+AA L +A+GVG G R S+ LR +L G+ IL+VDDN VN VAA LK+YGA
Sbjct: 763 TVAACLSKALGVGLTG--RRSRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAI 820
Query: 913 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
V CV+ GK+A L PPH+FDACFMD+QMPEMDG+E
Sbjct: 821 VTCVDSGKEAISRLQPPHKFDACFMDVQMPEMDGFE 856
>gi|218184380|gb|EEC66807.1| hypothetical protein OsI_33219 [Oryza sativa Indica Group]
Length = 942
Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/876 (55%), Positives = 625/876 (71%), Gaps = 54/876 (6%)
Query: 107 MSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFT 166
M + +R E L +MCDERARMLQDQFNVSMNHV A++IL+STFHHGKNPSAIDQ TF
Sbjct: 1 MHADVVARRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKNPSAIDQKTFE 60
Query: 167 RYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVH-----KDEPS 221
+T RT FERPL SGVAYA++VL SERE FE++ GW IK+M+T + + VH K +PS
Sbjct: 61 DFTARTTFERPLMSGVAYALKVLHSERELFEQKLGWKIKKMETEDQSLVHDYNPEKLQPS 120
Query: 222 PIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVI 281
P+++EYAPVIF+Q+TV H+IS+DM+SGKEDR+N+LR+RA+GKG LTAPF LLK+N LGV+
Sbjct: 121 PVQDEYAPVIFSQETVKHIISVDMMSGKEDRDNILRSRATGKGALTAPFPLLKSNHLGVV 180
Query: 282 LTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNL 341
LTF VYK +LP +ATP ERIEAT GYLG FD+ SLVE+LL QLASKQ I V +YDITN
Sbjct: 181 LTFTVYKYDLPPDATPEERIEATLGYLGASFDVPSLVERLLEQLASKQKIVVRLYDITNH 240
Query: 342 SHPISMYGSNV--SDDGLWLVSTLNFGDPFRKHEMRCRFKQKA--PWPLLAISTSIGILV 397
++P MY S+V SDD +S ++FGDP RKH M CRFK PW + IS+++ I+V
Sbjct: 241 TYPTKMYDSDVIASDD--LHISNIDFGDPTRKHVMHCRFKHAPSLPWSAIMISSAVAIIV 298
Query: 398 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
+ LVG+I AT+N + + E++Y M +LK +AEAADVAKSQFLATVSHEIRTPMNGVLG
Sbjct: 299 L--LVGYIIYATLNSLEEAEDNYTTMRDLKGRAEAADVAKSQFLATVSHEIRTPMNGVLG 356
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
ML MLMDTELD TQ+D+V TAQ SGK+L++LINEVLD AK+ESGK+ELEAV F++R ILD
Sbjct: 357 MLQMLMDTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDILD 416
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
+V+SLFS KS KG+ELAV +SD+VP+ LIGDP RFRQIITNL+GNS+KFTE+GHIF+ V
Sbjct: 417 NVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRV 476
Query: 578 YLVEEVVDSIEVETELSSSK-------------NTLSGYPVADRCHSWKGFKTFNQDGST 624
+L+EEV +E + S NTLSG VA+ + + F+ F
Sbjct: 477 HLIEEVKRKMEALDDTSPENIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKD---- 532
Query: 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 684
S + D +NL+V+VEDTG GI +AQ+RIFTPFMQ S SRT+GGTGIGLSI+K L
Sbjct: 533 ---SSDAIDSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRL 589
Query: 685 VGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ-PNSVSSEFQGMKALV 743
V M GEIGFVS P + STF+FTA+F N + + P +FQGM+ALV
Sbjct: 590 VELMGGEIGFVSKPGVSSTFSFTAIF-----KENRKDPGDIKRYCPEPTPPDFQGMRALV 644
Query: 744 VDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI-----ASGSKIINMILVEQEVWEKD 798
VD R RA+V+ YH++RLGIQ ++ + LS + +S +NM+LV++E W +D
Sbjct: 645 VDGRCTRAEVTMYHLRRLGIQCDLAATSESALSALLESCNSSVKSSLNMVLVDKEAWGED 704
Query: 799 TSVSTL-FVNNLRKLGC--GFQS--KLFLLANSISSSRANT-STDGVSIPSVIMKPLRSS 852
+ ++ + +LR G +Q+ K FLLA SI+ + ++ G S + I KPLR S
Sbjct: 705 SGLAFFRCLIDLRLKGTLKSWQTMPKFFLLAGSITPADSDCLRLAGYS--NSIRKPLRLS 762
Query: 853 MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAA 912
+AA L +A+GVG G R S+ LR +L G+ IL+VDDN VN VAA LK+YGA
Sbjct: 763 TVAACLSKALGVGLTG--RRSRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAI 820
Query: 913 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
V CV+ GK+A L PPH+FDACFMD+QMPEMDG+E
Sbjct: 821 VTCVDSGKEAISRLQPPHKFDACFMDVQMPEMDGFE 856
>gi|13359157|dbj|BAB33311.1| cytokinin receptor CRE1b [Arabidopsis thaliana]
Length = 1080
Score = 919 bits (2374), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/890 (54%), Positives = 618/890 (69%), Gaps = 40/890 (4%)
Query: 87 KVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSI 146
K LI W++ +S I+ +M +R E L SMCD+RARMLQDQF+VS+NHV A++I
Sbjct: 129 KALILWIIIVGFISSGIYQWMDDANKIRREEVLVSMCDQRARMLQDQFSVSVNHVHALAI 188
Query: 147 LISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKR 206
L+STFH+ KNPSAIDQ TF YT RTAFERPL SGVAYA +V+ ERE FE+Q W IK
Sbjct: 189 LVSTFHYHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKT 248
Query: 207 MDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266
MD + EPSP+ +EYAPVIF+QD+VS++ SLDM+SG+EDREN+LRAR +GK VL
Sbjct: 249 MD--------RGEPSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARETGKAVL 300
Query: 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLA 326
T+PFRLL+T+ LGV+LTF VYK LP N T ERI AT GYLGG FD+ESLVE LL QLA
Sbjct: 301 TSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLA 360
Query: 327 SKQTIFVNVYDITNLSHPISMYGSN--VSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPW 384
Q I V+VYDITN S P+ MYG+ +D L S L+FGDPFRKH+M CR+ QKAP
Sbjct: 361 GNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPI 420
Query: 385 PLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATV 444
PL ++T I LVG+I I KVE+D+H M ELK +AEAADVAKSQFLATV
Sbjct: 421 PLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQFLATV 480
Query: 445 SHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504
SHEIRTPMNG+LGML ML+DTEL TQ+DY +TAQ GKAL++LINEVLD+AK+E+GKLE
Sbjct: 481 SHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKIEAGKLE 540
Query: 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNS 564
LE+V F++R+ILDDVLSLFS +S++KG+ELAV++SD+VPE + GD GRFRQII NL+GNS
Sbjct: 541 LESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKVPEIVKGDSGRFRQIIINLVGNS 600
Query: 565 IKFTEKGHIFVTVYLVEEVVDSIEVETELS-------------SSKNTLSGYPVADRCHS 611
+KFTEKGHIFV V+L E+ D E + L+ SS NTLSGY AD +S
Sbjct: 601 VKFTEKGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVSKQSSYNTLSGYEAADGRNS 660
Query: 612 WKGFKTF-NQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 670
W FK +++ S S F SS + L+VS+EDTG GIPL AQ R+F PFMQ S SR
Sbjct: 661 WDSFKHLVSEEQSLSEFDISSN--VRLMVSIEDTGIGIPLVAQGRVFMPFMQADSSTSRN 718
Query: 671 HGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPN 730
+GGTGIGLSISK LV M+G+I F+S P+IGSTF FTAV S ++ ++ N +
Sbjct: 719 YGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKKPNVE-- 776
Query: 731 SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS----GSKI-- 784
+ S F+GMKA+VVD +P+RA V+RYH++RLGI V+VV+ + A+ GS +
Sbjct: 777 HLPSTFKGMKAIVVDAKPVRAAVTRYHMKRLGINVDVVTSLKTAVVAAAAFERNGSPLPT 836
Query: 785 ---INMILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQS-KLFLLANSISSSRANTSTDG 838
++MILVE++ W +D +N+ +S KL L A +I++S + +
Sbjct: 837 KPQLDMILVEKDSWISTEDNDSEIRLLNSRTNGNVHHKSPKLALFATNITNSEFDRAKSA 896
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 898
+VIMKPLR+SM+ A LQ+ + + +L+ LL G+KIL+VDDN VN
Sbjct: 897 GFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLLTGKKILVVDDNIVN 956
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+VAA LK++GA VVC E G+ A LL PH FDACFMDIQMP+MDG+E
Sbjct: 957 RRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQMDGFE 1006
>gi|215878091|gb|ACJ63457.1| putative histidine kinase [Brassica rapa subsp. pekinensis]
Length = 1070
Score = 918 bits (2373), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/893 (54%), Positives = 624/893 (69%), Gaps = 48/893 (5%)
Query: 87 KVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSI 146
K LI W + +S I+ +M + +R E L SMCD+RARMLQDQF+VS+NHV A++I
Sbjct: 117 KGLILWTIIVGFISRGIYQWMDDTSKVRREEVLVSMCDQRARMLQDQFSVSVNHVHALAI 176
Query: 147 LISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKR 206
L+STFH+ KNPSAIDQ TF YT RTAFERPL SGVAYA +V+ +ERE FE Q W IK
Sbjct: 177 LVSTFHYHKNPSAIDQGTFADYTARTAFERPLLSGVAYAEKVVNAEREMFESQHNWVIKT 236
Query: 207 MDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266
MDT EPSP+ +EYAPVIF+QD+VS++ SLDM+SG+EDREN+LRAR +GK VL
Sbjct: 237 MDT--------GEPSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARETGKAVL 288
Query: 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLA 326
T+PFRLL ++ LGV+LTF VYK LP N T ERI AT GYLGG FD+ESLVE LL QLA
Sbjct: 289 TSPFRLLASHHLGVVLTFPVYKASLPKNPTVQERIAATAGYLGGAFDVESLVENLLGQLA 348
Query: 327 SKQTIFVNVYDITNLSHPISMYGSN--VSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPW 384
Q I V+VYDITN S P+ MYG+ D L+ S L+FGDPFRKH+M CR+ QKAP
Sbjct: 349 GNQAIVVHVYDITNASDPLVMYGNQDEEGDTSLYHESKLDFGDPFRKHKMICRYLQKAPI 408
Query: 385 PLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATV 444
PL ++T I LVG+I I KVE+D+H M ELK +AEAADVAKSQFLATV
Sbjct: 409 PLNVLTTVPLFFAIGFLVGYILYGAAVHIVKVEDDFHEMQELKVRAEAADVAKSQFLATV 468
Query: 445 SHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504
SHEIRTPMNG+LGML ML+DTEL TQ+DY +TAQ GKAL++LINEVLD+AK+E+GKLE
Sbjct: 469 SHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKIEAGKLE 528
Query: 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNS 564
LE+V F++R+ILDDVLSLFS +S++KG+ELAV++SD+VPE + GD GRFRQII NL+GNS
Sbjct: 529 LESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKVPEIVKGDSGRFRQIIINLVGNS 588
Query: 565 IKFTEKGHIFVTVYLVEEVVDSIEVETELS--------------SSKNTLSGYPVADRCH 610
+KFTEKGHIFV V+L E+ D E + L+ SS NTLSGY AD +
Sbjct: 589 VKFTEKGHIFVKVHLAEQSKDGAESKPALNGGVASEDITAASKPSSYNTLSGYEAADGRN 648
Query: 611 SWKGFK---TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667
SW FK + + ++S F++SS + L+VS+EDTG GIPL AQ R+F PFMQ S
Sbjct: 649 SWDSFKHLLSSEELLTSSEFEASSN--VRLMVSIEDTGIGIPLTAQGRVFMPFMQADSST 706
Query: 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 727
SRT+GGTGIGLSISK LV M+G+I FVS P +GSTF FTAVF S + + + N
Sbjct: 707 SRTYGGTGIGLSISKCLVELMRGQISFVSRPRVGSTFWFTAVFERCDKCSLKKPT--VEN 764
Query: 728 QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQ--------IA 779
P+S F+GM+A+VVD +P+RA V+RYH++RLGI V+V++ +S +
Sbjct: 765 LPSS----FRGMRAIVVDAKPVRAAVTRYHMKRLGISVDVMTSLRTAVSTASGRNGSPLP 820
Query: 780 SGSKIINMILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQS-KLFLLANSISSSRANTST 836
SG+ ++MILVE++ W +D +N+ ++ KL L A +I++S + +
Sbjct: 821 SGTTKLDMILVEKDSWISTEDIDAEIRQMNSRTNGNVRHKTPKLALFATNITNSEFDRAK 880
Query: 837 DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLLGRKILIVDDN 895
+VIMKPLR+SM+ A LQ+ + + K ++ E S +L+ LL G+KIL++DDN
Sbjct: 881 SAGFADTVIMKPLRASMIGACLQQVLEL-RKARQQHPEGSSPATLKSLLTGKKILVIDDN 939
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VN +VAA LK++GA VVC E G+ A LL PH FDACFMDIQMP+MDG+E
Sbjct: 940 MVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHSFDACFMDIQMPQMDGFE 992
>gi|13359155|dbj|BAB33310.1| cytokinin receptor CRE1a [Arabidopsis thaliana]
Length = 1057
Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/890 (54%), Positives = 618/890 (69%), Gaps = 40/890 (4%)
Query: 87 KVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSI 146
K LI W++ +S I+ +M +R E L SMCD+RARMLQDQF+VS+NHV A++I
Sbjct: 106 KALILWIIIVGFISSGIYQWMDDANKIRREEVLVSMCDQRARMLQDQFSVSVNHVHALAI 165
Query: 147 LISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKR 206
L+STFH+ KNPSAIDQ TF YT RTAFERPL SGVAYA +V+ ERE FE+Q W IK
Sbjct: 166 LVSTFHYHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKT 225
Query: 207 MDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266
MD + EPSP+ +EYAPVIF+QD+VS++ SLDM+SG+EDREN+LRAR +GK VL
Sbjct: 226 MD--------RGEPSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARETGKAVL 277
Query: 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLA 326
T+PFRLL+T+ LGV+LTF VYK LP N T ERI AT GYLGG FD+ESLVE LL QLA
Sbjct: 278 TSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLA 337
Query: 327 SKQTIFVNVYDITNLSHPISMYGSN--VSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPW 384
Q I V+VYDITN S P+ MYG+ +D L S L+FGDPFRKH+M CR+ QKAP
Sbjct: 338 GNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPI 397
Query: 385 PLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATV 444
PL ++T I LVG+I I KVE+D+H M ELK +AEAADVAKSQFLATV
Sbjct: 398 PLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQFLATV 457
Query: 445 SHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504
SHEIRTPMNG+LGML ML+DTEL TQ+DY +TAQ GKAL++LINEVLD+AK+E+GKLE
Sbjct: 458 SHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKIEAGKLE 517
Query: 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNS 564
LE+V F++R+ILDDVLSLFS +S++KG+ELAV++SD+VPE + GD GRFRQII NL+GNS
Sbjct: 518 LESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKVPEIVKGDSGRFRQIIINLVGNS 577
Query: 565 IKFTEKGHIFVTVYLVEEVVDSIEVETELS-------------SSKNTLSGYPVADRCHS 611
+KFTEKGHIFV V+L E+ D E + L+ SS NTLSGY AD +S
Sbjct: 578 VKFTEKGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVSKQSSYNTLSGYEAADGRNS 637
Query: 612 WKGFKTF-NQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 670
W FK +++ S S F SS + L+VS+EDTG GIPL AQ R+F PFMQ S SR
Sbjct: 638 WDSFKHLVSEEQSLSEFDISSN--VRLMVSIEDTGIGIPLVAQGRVFMPFMQADSSTSRN 695
Query: 671 HGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPN 730
+GGTGIGLSISK LV M+G+I F+S P+IGSTF FTAV S ++ ++ N +
Sbjct: 696 YGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKKPNVE-- 753
Query: 731 SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS----GSKI-- 784
+ S F+GMKA+VVD +P+RA V+RYH++RLGI V+VV+ + A+ GS +
Sbjct: 754 HLPSTFKGMKAIVVDAKPVRAAVTRYHMKRLGINVDVVTSLKTAVVAAAAFERNGSPLPT 813
Query: 785 ---INMILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQS-KLFLLANSISSSRANTSTDG 838
++MILVE++ W +D +N+ +S KL L A +I++S + +
Sbjct: 814 KPQLDMILVEKDSWISTEDNDSEIRLLNSRTNGNVHHKSPKLALFATNITNSEFDRAKSA 873
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 898
+VIMKPLR+SM+ A LQ+ + + +L+ LL G+KIL+VDDN VN
Sbjct: 874 GFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLLTGKKILVVDDNIVN 933
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+VAA LK++GA VVC E G+ A LL PH FDACFMDIQMP+MDG+E
Sbjct: 934 RRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQMDGFE 983
>gi|30677959|ref|NP_849925.1| histidine kinase 4 [Arabidopsis thaliana]
gi|75168993|sp|Q9C5U0.1|AHK4_ARATH RecName: Full=Histidine kinase 4; AltName: Full=Arabidopsis histidine
kinase 4; Short=AtHK4; AltName: Full=Cytokinin receptor
CYTOKININ RESPONSE 1; Short=AtCRE1; Short=Cytokinin
receptor CRE1; AltName: Full=Phosphoprotein phosphatase
AHK4; AltName: Full=Protein AUTHENTIC HIS-KINASE 4;
AltName: Full=Protein ROOT AS IN WOL 1; AltName:
Full=Protein WOODEN LEG
gi|13537200|dbj|BAB40776.1| histidine kinase [Arabidopsis thaliana]
gi|330250411|gb|AEC05505.1| histidine kinase 4 [Arabidopsis thaliana]
Length = 1080
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/890 (54%), Positives = 617/890 (69%), Gaps = 40/890 (4%)
Query: 87 KVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSI 146
K LI W++ +S I+ +M +R E L SMCD+RARMLQDQF+VS+NHV A++I
Sbjct: 129 KALILWIIIVGFISSGIYQWMDDANKIRREEVLVSMCDQRARMLQDQFSVSVNHVHALAI 188
Query: 147 LISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKR 206
L+STFH+ KNPSAIDQ TF YT RTAFERPL SGVAYA +V+ ERE FE+Q W IK
Sbjct: 189 LVSTFHYHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKT 248
Query: 207 MDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266
MD + EPSP+ +EYAPVIF+QD+VS++ SLDM+SG+EDREN+LRAR +GK VL
Sbjct: 249 MD--------RGEPSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARETGKAVL 300
Query: 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLA 326
T+PFRLL+T+ LGV+LTF VYK LP N T ERI AT GYLGG FD+ESLVE LL QLA
Sbjct: 301 TSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLA 360
Query: 327 SKQTIFVNVYDITNLSHPISMYGSN--VSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPW 384
Q I V+VYDITN S P+ MYG+ +D L S L+FGDPFRKH+M CR+ QKAP
Sbjct: 361 GNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPI 420
Query: 385 PLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATV 444
PL ++T I LVG+I I KVE+D+H M ELK +AEAADVAKSQFLATV
Sbjct: 421 PLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQFLATV 480
Query: 445 SHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504
SHEIRTPMNG+LGML ML+DTEL TQ+DY +TAQ GKAL++LINEVLD+AK+E+GKLE
Sbjct: 481 SHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKIEAGKLE 540
Query: 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNS 564
LE+V F++R+ILDDVLSLFS +S++K +ELAV++SD+VPE + GD GRFRQII NL+GNS
Sbjct: 541 LESVPFDIRSILDDVLSLFSEESRNKSIELAVFVSDKVPEIVKGDSGRFRQIIINLVGNS 600
Query: 565 IKFTEKGHIFVTVYLVEEVVDSIEVETELS-------------SSKNTLSGYPVADRCHS 611
+KFTEKGHIFV V+L E+ D E + L+ SS NTLSGY AD +S
Sbjct: 601 VKFTEKGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVSKQSSYNTLSGYEAADGRNS 660
Query: 612 WKGFKTF-NQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 670
W FK +++ S S F SS + L+VS+EDTG GIPL AQ R+F PFMQ S SR
Sbjct: 661 WDSFKHLVSEEQSLSEFDISSN--VRLMVSIEDTGIGIPLVAQGRVFMPFMQADSSTSRN 718
Query: 671 HGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPN 730
+GGTGIGLSISK LV M+G+I F+S P+IGSTF FTAV S ++ ++ N +
Sbjct: 719 YGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKKPNVE-- 776
Query: 731 SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS----GSKI-- 784
+ S F+GMKA+VVD +P+RA V+RYH++RLGI V+VV+ + A+ GS +
Sbjct: 777 HLPSTFKGMKAIVVDAKPVRAAVTRYHMKRLGINVDVVTSLKTAVVAAAAFERNGSPLPT 836
Query: 785 ---INMILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQS-KLFLLANSISSSRANTSTDG 838
++MILVE++ W +D +N+ +S KL L A +I++S + +
Sbjct: 837 KPQLDMILVEKDSWISTEDNDSEIRLLNSRTNGNVHHKSPKLALFATNITNSEFDRAKSA 896
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 898
+VIMKPLR+SM+ A LQ+ + + +L+ LL G+KIL+VDDN VN
Sbjct: 897 GFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLLTGKKILVVDDNIVN 956
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+VAA LK++GA VVC E G+ A LL PH FDACFMDIQMP+MDG+E
Sbjct: 957 RRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQMDGFE 1006
>gi|18379305|ref|NP_565277.1| histidine kinase 4 [Arabidopsis thaliana]
gi|42570645|ref|NP_973396.1| histidine kinase 4 [Arabidopsis thaliana]
gi|11595487|emb|CAC18521.1| putative histidine kinase receptor [Arabidopsis thaliana]
gi|11595489|emb|CAC18522.1| putative histidine kinase receptor [Arabidopsis thaliana]
gi|11595491|emb|CAC18523.1| putative histidine kinase receptor [Arabidopsis thaliana]
gi|20198055|gb|AAD21777.2| putative histidine kinase [Arabidopsis thaliana]
gi|82569501|gb|ABB83393.1| AtCRE1a [Receiver Vector p415-CYC1-CRE1a-SSRE-GFP]
gi|82569506|gb|ABB83397.1| AtCRE1a [Receiver Vector p415-CYC1-CRE1a-TR-SSRE-GFP]
gi|330250412|gb|AEC05506.1| histidine kinase 4 [Arabidopsis thaliana]
gi|330250413|gb|AEC05507.1| histidine kinase 4 [Arabidopsis thaliana]
Length = 1057
Score = 915 bits (2366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/890 (54%), Positives = 617/890 (69%), Gaps = 40/890 (4%)
Query: 87 KVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSI 146
K LI W++ +S I+ +M +R E L SMCD+RARMLQDQF+VS+NHV A++I
Sbjct: 106 KALILWIIIVGFISSGIYQWMDDANKIRREEVLVSMCDQRARMLQDQFSVSVNHVHALAI 165
Query: 147 LISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKR 206
L+STFH+ KNPSAIDQ TF YT RTAFERPL SGVAYA +V+ ERE FE+Q W IK
Sbjct: 166 LVSTFHYHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKT 225
Query: 207 MDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266
MD + EPSP+ +EYAPVIF+QD+VS++ SLDM+SG+EDREN+LRAR +GK VL
Sbjct: 226 MD--------RGEPSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARETGKAVL 277
Query: 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLA 326
T+PFRLL+T+ LGV+LTF VYK LP N T ERI AT GYLGG FD+ESLVE LL QLA
Sbjct: 278 TSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLA 337
Query: 327 SKQTIFVNVYDITNLSHPISMYGSN--VSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPW 384
Q I V+VYDITN S P+ MYG+ +D L S L+FGDPFRKH+M CR+ QKAP
Sbjct: 338 GNQAIVVHVYDITNASDPLVMYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKAPI 397
Query: 385 PLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATV 444
PL ++T I LVG+I I KVE+D+H M ELK +AEAADVAKSQFLATV
Sbjct: 398 PLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQFLATV 457
Query: 445 SHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504
SHEIRTPMNG+LGML ML+DTEL TQ+DY +TAQ GKAL++LINEVLD+AK+E+GKLE
Sbjct: 458 SHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKIEAGKLE 517
Query: 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNS 564
LE+V F++R+ILDDVLSLFS +S++K +ELAV++SD+VPE + GD GRFRQII NL+GNS
Sbjct: 518 LESVPFDIRSILDDVLSLFSEESRNKSIELAVFVSDKVPEIVKGDSGRFRQIIINLVGNS 577
Query: 565 IKFTEKGHIFVTVYLVEEVVDSIEVETELS-------------SSKNTLSGYPVADRCHS 611
+KFTEKGHIFV V+L E+ D E + L+ SS NTLSGY AD +S
Sbjct: 578 VKFTEKGHIFVKVHLAEQSKDESEPKNALNGGVSEEMIVVSKQSSYNTLSGYEAADGRNS 637
Query: 612 WKGFKTF-NQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 670
W FK +++ S S F SS + L+VS+EDTG GIPL AQ R+F PFMQ S SR
Sbjct: 638 WDSFKHLVSEEQSLSEFDISSN--VRLMVSIEDTGIGIPLVAQGRVFMPFMQADSSTSRN 695
Query: 671 HGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPN 730
+GGTGIGLSISK LV M+G+I F+S P+IGSTF FTAV S ++ ++ N +
Sbjct: 696 YGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKKPNVE-- 753
Query: 731 SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS----GSKI-- 784
+ S F+GMKA+VVD +P+RA V+RYH++RLGI V+VV+ + A+ GS +
Sbjct: 754 HLPSTFKGMKAIVVDAKPVRAAVTRYHMKRLGINVDVVTSLKTAVVAAAAFERNGSPLPT 813
Query: 785 ---INMILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQS-KLFLLANSISSSRANTSTDG 838
++MILVE++ W +D +N+ +S KL L A +I++S + +
Sbjct: 814 KPQLDMILVEKDSWISTEDNDSEIRLLNSRTNGNVHHKSPKLALFATNITNSEFDRAKSA 873
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 898
+VIMKPLR+SM+ A LQ+ + + +L+ LL G+KIL+VDDN VN
Sbjct: 874 GFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLLTGKKILVVDDNIVN 933
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+VAA LK++GA VVC E G+ A LL PH FDACFMDIQMP+MDG+E
Sbjct: 934 RRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQMDGFE 983
>gi|413934338|gb|AFW68889.1| putative histidine kinase family protein [Zea mays]
Length = 1201
Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/906 (53%), Positives = 628/906 (69%), Gaps = 53/906 (5%)
Query: 77 SKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNV 136
S ++ W ++ L+ +LF S+ IF M + +R E L +MCDERARMLQDQFNV
Sbjct: 232 STKISRKWSKRALLIGVLFGLCSSVCIFSCMYADVVARRIENLANMCDERARMLQDQFNV 291
Query: 137 SMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEF 196
SMNHV A++IL+S+FHHGK+PSAIDQ TF +T RT FERPL SGVAYA++VL +ER++F
Sbjct: 292 SMNHVHALAILVSSFHHGKDPSAIDQKTFEDFTARTTFERPLMSGVAYALKVLHNERQQF 351
Query: 197 EKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKED 251
E+Q GW IK+M+ + + VH K EPSP+++EYAPVIF+Q+TV H+IS+DM+SGKED
Sbjct: 352 EEQHGWKIKKMEDGDQSLVHDYNLEKLEPSPVQDEYAPVIFSQETVKHIISVDMMSGKED 411
Query: 252 RENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGI 311
+N+LR+ ++GKG LT+PF+LLK+N LGV+LTF VYK +LP NATP ERI AT GYLG
Sbjct: 412 HDNILRSWSTGKGALTSPFKLLKSNHLGVVLTFTVYKYDLPPNATPQERIHATLGYLGAS 471
Query: 312 FDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRK 371
FD+ SLV+KLL QLASK+ I VN+YD TN + PI MYGS+ + G +S+++FGDP RK
Sbjct: 472 FDVPSLVDKLLEQLASKRKIVVNLYDTTNHTSPIEMYGSDFTPSGDLHISSIDFGDPTRK 531
Query: 372 HEMRCRFKQKA--PWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKK 429
HEM CRFK + PW + IST++ I+V+ LVGHI AT+N + K E DY M ELK +
Sbjct: 532 HEMHCRFKHEPSLPWSAIIISTAVAIIVL--LVGHIIYATLNSLEKAEHDYRVMRELKGQ 589
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489
AEAAD+AKSQFLATVSHEIRTPMNGVLGML MLMDTELD TQQD+V TAQ SGK L++LI
Sbjct: 590 AEAADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQQDFVVTAQESGKVLINLI 649
Query: 490 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 549
NEVLD AK+ESG++ELEAV F++R ILD+V+SLF KSQ KG+ELAV +SD+VP+ LIGD
Sbjct: 650 NEVLDLAKIESGRIELEAVPFDVRDILDNVISLFYDKSQAKGIELAVLVSDQVPDVLIGD 709
Query: 550 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV-------VD------SIEVETELSSS 596
P RFRQIITNL+GNS+KFTE+GHIFV V+LV+E+ D I +++ S
Sbjct: 710 PWRFRQIITNLVGNSMKFTEQGHIFVQVHLVKELNRKGNNFCDVSAHNREILYDSDNSML 769
Query: 597 KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSA--DLINLIVSVEDTGQGIPLEAQS 654
NTLSG VAD SW+ + F FK+S+ D I L V VEDTG GI +AQ
Sbjct: 770 WNTLSGLEVAD---SWRSLENFTM------FKNSNGETDTIRLAVRVEDTGIGITKDAQM 820
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
RIFTPFMQ S SRT+GGTGIGLSI+K LV M GEIGF S +GSTF+FTA+F
Sbjct: 821 RIFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSGVGSTFSFTAIFKENR 880
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---- 770
+ ++ ++P + +FQGM+AL++D R RA+V+ YH++RLGIQ +V+
Sbjct: 881 GCPGD--MKRYYSEPTPL--DFQGMRALIIDGRSARAEVTMYHLRRLGIQCSLVATSESE 936
Query: 771 --QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL--FVNNLRKLGCGFQS---KLFLL 823
+ S +M+LV+ E W K + ++ FV+ K F K LL
Sbjct: 937 SASSALMKACTSSKNNPDMVLVDTEAWGKGSGLAFYHRFVDCQLKGAHKFSQPMPKTILL 996
Query: 824 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG-NKGNIRNWELPSMSLRH 882
+SIS ++ I KPLR S + A L++ +GVG + R+ S+ L+
Sbjct: 997 GSSISPVESDY-LRLTGFGDCIRKPLRLSTIVACLRKTLGVGVTRQQSRDQ---SLVLQS 1052
Query: 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
+L G++IL+VDDN VN KVAA LK+YG+ V CV+ G A ++L PPH FDACFMD+QMP
Sbjct: 1053 VLTGKQILVVDDNAVNRKVAAGSLKKYGSKVTCVDSGSDAIDMLKPPHTFDACFMDVQMP 1112
Query: 943 EMDGYE 948
EMDG+E
Sbjct: 1113 EMDGFE 1118
>gi|297817796|ref|XP_002876781.1| cytokinin receptor CRE1b [Arabidopsis lyrata subsp. lyrata]
gi|297322619|gb|EFH53040.1| cytokinin receptor CRE1b [Arabidopsis lyrata subsp. lyrata]
Length = 1060
Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/894 (54%), Positives = 620/894 (69%), Gaps = 49/894 (5%)
Query: 87 KVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSI 146
K LI W++ +S I+ +M +R E L SMCD+RARMLQDQF+VS+NHV A++I
Sbjct: 110 KALILWIIIVGFISSGIYQWMDDTNKVRREEVLVSMCDQRARMLQDQFSVSVNHVHALAI 169
Query: 147 LISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKR 206
L+STFH+ KNPSAIDQ TF YT RTAFERPL SGVAYA +V+ ERE FE+Q W IK
Sbjct: 170 LVSTFHYHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKT 229
Query: 207 MDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266
MD + EPSP+ +EYAPVIF+QD++S++ SLDM+SG+EDREN+LRAR +GK VL
Sbjct: 230 MD--------RGEPSPVRDEYAPVIFSQDSLSYLESLDMMSGEEDRENILRARETGKAVL 281
Query: 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLA 326
T+PFRLL+T+ LGV+LTF VYK LP N T ERI AT GYLGG FD+ESLVE LL QLA
Sbjct: 282 TSPFRLLETHHLGVVLTFPVYKSSLPENPTVQERIAATAGYLGGAFDVESLVENLLGQLA 341
Query: 327 SKQTIFVNVYDITNLSHPISMYGSN--VSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPW 384
Q I V+VYDITN S P+ MYG+ D L S L+FGDPFRKH+M CR+ QKAP
Sbjct: 342 GNQAIVVHVYDITNASDPLVMYGNQDEEGDTSLSHESKLDFGDPFRKHKMICRYHQKAPI 401
Query: 385 PLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATV 444
PL ++T I LVG+I I KVE+D+H M ELK +AEAADVAKSQFLATV
Sbjct: 402 PLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVEDDFHEMQELKVRAEAADVAKSQFLATV 461
Query: 445 SHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504
SHEIRTPMNG+LGML ML+DTEL TQ+DY +TAQ GKAL++LINEVLD+AK+E+GKLE
Sbjct: 462 SHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKIEAGKLE 521
Query: 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNS 564
LE+V F++R+ILDDVLSLFS +S++KG+ELAV++SD+VPE + GD GRFRQII NL+GNS
Sbjct: 522 LESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKVPEIVKGDSGRFRQIIINLVGNS 581
Query: 565 IKFTEKGHIFVTVYLVEEVVDSIEVETELS------------SSKNTLSGYPVADRCHSW 612
+KFTE+GHIFV V+LVE+ D E +T L+ SS NTLSGY AD +SW
Sbjct: 582 VKFTERGHIFVKVHLVEQSKDEAEPKTALNGVSEEMIVVSKPSSYNTLSGYEAADGRNSW 641
Query: 613 KGFKTF-NQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 671
FK +++ S S F SS + L+VS+EDTG GIPL AQ R+ PFMQ S SR +
Sbjct: 642 DSFKHLVSEEQSLSEFDISSN--VRLMVSIEDTGIGIPLAAQGRVLMPFMQADSSTSRNY 699
Query: 672 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNS 731
GGTGIGLSISK LV M+G+I F+S P+IGSTF FTAV S ++ ++ N +
Sbjct: 700 GGTGIGLSISKCLVELMRGQIHFISRPHIGSTFWFTAVLEKCDKCSAINHLKKPNVE--H 757
Query: 732 VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS----GSKI--- 784
+ S F+GM+A+VVD +P+RA V++YH++RLGI V+VV+ + A+ GS +
Sbjct: 758 LPSTFKGMRAIVVDAKPVRAAVTKYHMKRLGINVDVVTSLKTAVVAAAAFGRNGSPLPTK 817
Query: 785 --INMILVEQEVWEKDTSVSTLFVNN-LRKLGCGFQS-------KLFLLANSISSSRANT 834
++MILVE++ W +ST +++ +R L F KL L A +I++S +
Sbjct: 818 PQLDMILVEKDSW-----ISTEDIDSEIRVLNSRFNGNVHLKSPKLALFATNITNSEFDR 872
Query: 835 STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDD 894
+ +VIMKPLR+SM+ A LQ+ + + +L+ LL +KIL+VDD
Sbjct: 873 AKSAGFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEGSSPATLKSLLTEKKILVVDD 932
Query: 895 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
N VN +VAA LK++GA VVC E G+ A LL PH FDACFMDIQMP+MDG+E
Sbjct: 933 NIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHNFDACFMDIQMPQMDGFE 986
>gi|190148353|gb|ACE63259.1| cytokinin receptor 1 [Betula pendula]
Length = 1004
Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/914 (52%), Positives = 616/914 (67%), Gaps = 50/914 (5%)
Query: 73 QSIGSKR------VRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDER 126
+ +G+KR W K L+ W+L +S I+ M +R+E LGSMCD+R
Sbjct: 19 EQMGTKRGCTFIQANRDWLPKFLLLWILVMAFLSTMIYNSMDDDNKVRRKEILGSMCDQR 78
Query: 127 ARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAV 186
ARMLQDQF+VS+NHV A++IL+STFH+ KNPSAIDQ TF YT RTAFERPL SGVAYA
Sbjct: 79 ARMLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGVAYAQ 138
Query: 187 RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDML 246
RV+ SERE FE+Q GW IK M+ EPSP+ + YAPVIF Q++VS++ SLDM+
Sbjct: 139 RVVNSERESFERQHGWIIKTMER---------EPSPVRDVYAPVIFTQESVSYIESLDMM 189
Query: 247 SGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG 306
SG+EDREN+LRA A+GK VLT+PFRLL ++ LGV+LTF VYK +L S+ E IEAT G
Sbjct: 190 SGEEDRENILRATATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLSSSPAMQELIEATAG 249
Query: 307 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 364
Y+GG FD+ESLVE LL QLA Q I VNVYD+TN S P+ MYG D L L S L+
Sbjct: 250 YVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLIMYGHQYQDSDLSLFHESKLD 309
Query: 365 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 424
FGDPFR+H+M CR+ QKAP A++T+ VI LVG+I I KVE+D+H M
Sbjct: 310 FGDPFRRHQMICRYHQKAPMSWTALTTAFLFFVIGLLVGYILYGAGIHIVKVEDDFHEME 369
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DTEL TQ+DY +TAQ GKA
Sbjct: 370 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQICGKA 429
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L++LINEVLD+AK+++GKLELEAV F LR+ILDDVLSLFS KS+ KG+ELAV++SD+VPE
Sbjct: 430 LIALINEVLDRAKIDAGKLELEAVPFVLRSILDDVLSLFSEKSRHKGIELAVFVSDKVPE 489
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE------------ 592
++GDPGRFRQI+TNL+GNS+KFTE+GHIFV V+L E + + + E
Sbjct: 490 IVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAEHTMAMVNAKAETCLNGGSDRSLF 549
Query: 593 LSSSK--NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKS-------SSADLINLIVSVED 643
LS + TLSG VAD +SW FK D S +++ + L+V VED
Sbjct: 550 LSGGREFKTLSGCEVADERNSWDIFKHLVADEELRSEASRNMMNTNEASEHVTLMVCVED 609
Query: 644 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 703
TG GIPL AQ R+F PFMQ S SR +GGTGIGLSISK LV M G+I F+S P +GST
Sbjct: 610 TGIGIPLCAQDRVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMGGQINFISRPQVGST 669
Query: 704 FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 763
F+FTAVFG + + ++ + S F+G+KALVVD +P+RA V+RYH++RLGI
Sbjct: 670 FSFTAVFGRCKKNAFSDVKKPIS---EDLPSGFRGLKALVVDEKPVRAAVTRYHLKRLGI 726
Query: 764 QVEVVSDQLQCLSQIASGSKII------NMILVEQEVW-EKDTSVSTLFVNNLRKLGCGF 816
VEV S ++ + +++LVE++ W + ++ + ++ G F
Sbjct: 727 LVEVASSFKIAVAMTGKKGSLTLRKFQPDLVLVEKDSWMSAEEGGLNGWLLDWKQNGHIF 786
Query: 817 Q-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 875
Q K+ LLA +I + + + +VIMKPLR+SM+AA LQ+ +G+G K L
Sbjct: 787 QLPKMILLATNIDKAEFDKAKAAGFADTVIMKPLRASMVAACLQQVLGIGKKRQQEKDML 846
Query: 876 PSMS-LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 934
S L+ LL G+KIL+VDDN VN +VA LK++GA V C E GK A LL PH FDA
Sbjct: 847 NGSSFLQSLLCGKKILVVDDNRVNRRVAEGALKKFGADVECAESGKAALALLQLPHNFDA 906
Query: 935 CFMDIQMPEMDGYE 948
CFMDIQMPEMDG+E
Sbjct: 907 CFMDIQMPEMDGFE 920
>gi|242038337|ref|XP_002466563.1| hypothetical protein SORBIDRAFT_01g010070 [Sorghum bicolor]
gi|241920417|gb|EER93561.1| hypothetical protein SORBIDRAFT_01g010070 [Sorghum bicolor]
Length = 996
Score = 901 bits (2329), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/907 (53%), Positives = 627/907 (69%), Gaps = 55/907 (6%)
Query: 76 GSKRVRETWWRKVLITWLLFWTLVS----LWIFWYMSSQATEKRREALGSMCDERARMLQ 131
G + R T K++ +L W LV+ +++ W + A K E L SMC+ERARMLQ
Sbjct: 27 GEEGTRWTMKEKLIAAAVLLWMLVAATIGVFLHWSIRHAALRKEEEGLVSMCEERARMLQ 86
Query: 132 DQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRS 191
DQF VS+NHV A++IL++TFH+ K+P A+DQ TF YT RT+FERPL SGVAYA RV +
Sbjct: 87 DQFAVSVNHVHALAILVATFHYEKHPPALDQDTFAEYTARTSFERPLLSGVAYAQRVEHA 146
Query: 192 EREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKED 251
+RE FE+QQGW IK M K EPSP+++EYAPV+++Q+TVS++ LDM+SG+ED
Sbjct: 147 DREGFERQQGWIIKTM---------KHEPSPVQDEYAPVVYSQETVSYIEGLDMMSGEED 197
Query: 252 RENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGI 311
REN+LR+RASGK VLT PFRL+ +N LGV+LTF VY +LP +A ER+ AT GYLGG
Sbjct: 198 RENILRSRASGKAVLTRPFRLM-SNHLGVVLTFPVYHVDLPPDAKEEERVAATAGYLGGS 256
Query: 312 FDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNV--SDDGLWLVSTLNFGDPF 369
FD+ESLVE LL QLA Q + VNVYD+TN S P+ MYGS V W + L+FGDPF
Sbjct: 257 FDVESLVENLLRQLAGNQELVVNVYDVTNSSDPLVMYGSEVPLGIPSPWHICMLDFGDPF 316
Query: 370 RKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKK 429
RKH M CR++ K P P AIST G+ VI LVG+I A +R V+ED M ELKK+
Sbjct: 317 RKHHMVCRYRNKPPLPWSAISTPSGVFVICMLVGYIVFAAWSRYDNVKEDCRKMEELKKQ 376
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489
AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+DT+L TQ+D+ +TAQ GKAL+SLI
Sbjct: 377 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLI 436
Query: 490 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 549
NEVLD+AK+E+GKL+LE+V F+LR+ILDDV++LFS KS++KG+ELAVY+S+RVPE L+GD
Sbjct: 437 NEVLDRAKIEAGKLDLESVPFDLRSILDDVIALFSSKSREKGIELAVYVSERVPEILLGD 496
Query: 550 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS-------------- 595
PGRFRQIITNL+GNSIKFTE+GHIFV V+L + + E E E +
Sbjct: 497 PGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATESEVEPVANGMNGHKDEKTAVA 556
Query: 596 ---SKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLE 651
S NTLSG+ AD +SW+ FK + + + P++S S D + L+VSVEDTG GIPL+
Sbjct: 557 TGVSLNTLSGFEAADSRNSWENFKLLLSYEKNEMPYESVS-DKVTLVVSVEDTGIGIPLD 615
Query: 652 AQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711
AQ+++FTPFMQ S SRT+GGTGIGLSIS+ LV M G+I FVS P +GSTFTFTAV
Sbjct: 616 AQAKVFTPFMQADSSTSRTYGGTGIGLSISQCLVELMGGQINFVSRPQVGSTFTFTAVLQ 675
Query: 712 NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 771
S +S+ + P + S F+G+ AL+VD RP+RA V++YH+QRLGI +VV+
Sbjct: 676 R-CDRSAIGDSKPVMLHP--LPSSFKGLSALLVDTRPVRATVTKYHLQRLGIACDVVATI 732
Query: 772 LQCLSQIA--SGSKIIN-----MILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQSKLFL 822
L ++ +GS + + M+L+E + W + D S+ + + + K+ L
Sbjct: 733 DLALGVLSGRNGSSLTSTKQPCMLLIESDSWGFKIDVSLRSRLLEMKQDGHTNLLPKIIL 792
Query: 823 LANSISSS-RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR 881
LA + SS +A+ + D SVI KPL++S LAA L + +G+ N R S SL
Sbjct: 793 LAAAESSKLKAHYAVD-----SVITKPLKASALAACLFQTLGITQSSNERRDN--SGSLH 845
Query: 882 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 941
LLLG+ IL+VDDN VNL+VAA LK++GA V CVE GK A LL P++F C MDIQM
Sbjct: 846 GLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALALLQVPYKFHLCLMDIQM 905
Query: 942 PEMDGYE 948
PEMDG+E
Sbjct: 906 PEMDGFE 912
>gi|113911568|gb|ABI48270.1| histidine kinase 2 [Lotus japonicus]
Length = 996
Score = 899 bits (2322), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/917 (52%), Positives = 629/917 (68%), Gaps = 52/917 (5%)
Query: 71 YYQSIGSKRV------RETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCD 124
++ +GSKR W L W+L +S I+ M +R+E LGS+CD
Sbjct: 10 HHDQMGSKRKYTFIQDHRAWLPWFLFMWVLLMAFISWNIYSKMDDDTKVRRKEVLGSLCD 69
Query: 125 ERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAY 184
+RARMLQDQF+VS+NHV A++IL+STFH+ +NPSAID+ TF YT RTAFERPL SGVAY
Sbjct: 70 QRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDEETFAEYTARTAFERPLLSGVAY 129
Query: 185 AVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLD 244
A RV+ SERE FEKQ GW IK M+ E S + +EYAPVIFAQ+TVS++ SLD
Sbjct: 130 AQRVINSERERFEKQHGWVIKTMER---------ESSQVRDEYAPVIFAQETVSYLESLD 180
Query: 245 MLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEAT 304
M+SG+ED+EN+LRARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP T ERIEAT
Sbjct: 181 MMSGEEDQENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTLEERIEAT 240
Query: 305 DGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYG--SNVSDDGLWLVST 362
GY+GG FD+ESLVE LL QLA Q I VNVYDITN S+P++MYG S +D L S
Sbjct: 241 AGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNCSNPLTMYGNHSEEADMSLSYESK 300
Query: 363 LNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHG 422
L+FGDP+R H+M CR+ QK P +A++T++ VI LVG+I N I KVE+D+H
Sbjct: 301 LDFGDPYRIHQMICRYHQKEPTNWVALTTAVLFFVILILVGYILYEAGNHIVKVEDDFHE 360
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
M +LK +AEAADVAKSQFLATVSHEIRTPMNG+LGM+ +L+DTEL TQ+DY +TAQA G
Sbjct: 361 MQDLKVRAEAADVAKSQFLATVSHEIRTPMNGILGMMALLLDTELSSTQRDYAQTAQACG 420
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
KAL++LINEVLD+AK+E+GKLELEAV F+LR+ILDDVLSLFS KS+ K +ELAV++SD+V
Sbjct: 421 KALITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKSLELAVFVSDKV 480
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV--VDSIEVETELSSSKN-- 598
P+ L+GDPGRFRQIITNL+GNS+KFTE+GHIFV V+L + + V + + ET L+ +
Sbjct: 481 PDILMGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLEDNINPVMNGKHETILNGESDEV 540
Query: 599 ----------TLSGYPVADRCHSWKGFKTF--NQD-----GSTSPFKSSSADLINLIVSV 641
TLSG D +SW+ FK N++ S S S++ + L V V
Sbjct: 541 FHLSGDCHFKTLSGCEAVDEQNSWENFKHLIANEERYFDCSSKMAATSESSEQVKLRVCV 600
Query: 642 EDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 701
EDTG GIP AQ IF PF+Q S SR +GGTGIGLSISK LV M G+I F S P +G
Sbjct: 601 EDTGTGIPFSAQDTIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFTSRPQVG 660
Query: 702 STFTFTAVFGNGSSTS-NEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 760
STF+FTA FG S ++ + + P+S F+G+K +VVD +P+RA V+RY ++R
Sbjct: 661 STFSFTAAFGMFKKNSVSDMKKLNLEDLPSS----FRGLKVIVVDGKPVRAAVTRYLLKR 716
Query: 761 LGIQVEVVSDQLQCLS------QIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLG 813
LGI V+V + Q ++ + SG ++I+VE++ W + ++ + ++ G
Sbjct: 717 LGILVKVANSISQAVALCGKNGSLTSGMFQPDIIMVEKDTWISGEHGGFNIWKLDFKQNG 776
Query: 814 CGFQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRN 872
F+ K+ LLA +I ++ + + +VIMKPLRSSM+AA LQ+ +G+G K +
Sbjct: 777 HVFKMPKMILLATNIKNTEFDQAKATGFTDTVIMKPLRSSMVAACLQQVLGIGKKRQLGQ 836
Query: 873 WELPSMS-LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 931
L S L+ LL G+KIL+VDDN VN +VAA LK++GA V CVE GK A E+L PH
Sbjct: 837 DMLNGSSFLQSLLYGKKILVVDDNVVNRRVAAGALKKFGADVKCVESGKAALEMLQLPHC 896
Query: 932 FDACFMDIQMPEMDGYE 948
FDACFMDIQMPEMDG+E
Sbjct: 897 FDACFMDIQMPEMDGFE 913
>gi|356499590|ref|XP_003518621.1| PREDICTED: histidine kinase 4-like [Glycine max]
Length = 988
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/913 (52%), Positives = 625/913 (68%), Gaps = 53/913 (5%)
Query: 72 YQSIGSKR------VRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDE 125
+ +GSKR W K L+ W+L L+S I+ M +R+E LGS+CD+
Sbjct: 18 HDQMGSKRKYTFIQAHRAWLPKFLLLWILLMALISWCIYSKMDDDTKVRRKEVLGSLCDQ 77
Query: 126 RARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYA 185
RARMLQDQF+VS+NHV A++IL+STFH+ PSAIDQ TF YT RTAFERPL SGVAYA
Sbjct: 78 RARMLQDQFSVSVNHVHALAILVSTFHYYSYPSAIDQETFAEYTARTAFERPLLSGVAYA 137
Query: 186 VRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDM 245
RV+ SERE FEK+ GW IK M+ + S + +EYAPVIFAQ TVS++ S+DM
Sbjct: 138 QRVVNSERERFEKEHGWVIKTMER---------KSSLVRDEYAPVIFAQQTVSYLESIDM 188
Query: 246 LSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATD 305
+SG+EDREN+LRARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP T ERIEAT
Sbjct: 189 MSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPQKPTVEERIEATA 248
Query: 306 GYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STL 363
GY+GG FD+ESLV+ LL QL Q I VNVYD+TN ++P+ MYG+ + + L S L
Sbjct: 249 GYVGGSFDVESLVKNLLGQLDGNQAILVNVYDVTNYTNPLIMYGNQYQEGDMSLAHESKL 308
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGM 423
+FGDP+RKH+M CR+ QKAP +A++T+ VI LVG+I + N I KVE+D+H M
Sbjct: 309 DFGDPYRKHQMICRYHQKAPTNWIALTTAFLFFVILFLVGYILYSAGNHIVKVEDDFHEM 368
Query: 424 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGK 483
ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DTEL TQ+DY +TAQA GK
Sbjct: 369 QELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGK 428
Query: 484 ALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVP 543
AL++LINEVLD+AK+E+GKLELEAV F+LR+I+DDVLSLFS KS+ KG+ELAV++SD+VP
Sbjct: 429 ALITLINEVLDRAKIEAGKLELEAVPFDLRSIIDDVLSLFSEKSRHKGLELAVFVSDKVP 488
Query: 544 ETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI--EVETELSSSKN--- 598
+ ++GDPGRFRQIITNL+GNS+KFTE+GHIFV V+L + + + ET L+ +
Sbjct: 489 DIVMGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLADNRKSMMNGKHETFLNGESDEVF 548
Query: 599 ---------TLSGYPVADRCHSWKGF------KTFNQDGSTSPFKS-SSADLINLIVSVE 642
TLSG AD +SW F K + D S + S++ + L V VE
Sbjct: 549 YISGDYHFKTLSGCEAADERNSWDNFKHLIADKEYGLDSSRETMAACESSEQVTLRVCVE 608
Query: 643 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 702
DTG GIP AQ RIF PF+Q S SR +GGTGIGLSISK LV M G+I F+S P +GS
Sbjct: 609 DTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGS 668
Query: 703 TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 762
TF+FTAV G +S + + + P S F+GMK +VVD +P+RA V+RYH++RLG
Sbjct: 669 TFSFTAVCGAFKKSSVTDKKENLEDLP----SNFRGMKVIVVDGKPVRASVTRYHLKRLG 724
Query: 763 IQVEVVSDQLQCLS------QIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCG 815
I V+V + + ++ + SG ++I+VE++ W + + ++ N R
Sbjct: 725 ILVKVANSISKAVALCGKTGSLTSGMFQPDIIMVEKDTWISGEDGIFNIWKQNGRMFK-- 782
Query: 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 875
K+ LLA +I S+ + + +VIMKPLR+SM+AA LQ+ +G+G + + ++
Sbjct: 783 -MPKMILLATNIISAEFDKAKATGFTDTVIMKPLRASMVAACLQQVLGMGKRRQL-GKDM 840
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
P+ L LL G+KIL+VDDN VN +VAA LK++GA V C E GK A E+L PH FDAC
Sbjct: 841 PNGFLHSLLYGKKILVVDDNGVNRRVAAGALKKFGADVKCAESGKAALEMLQLPHNFDAC 900
Query: 936 FMDIQMPEMDGYE 948
FMDIQMPEMDG+E
Sbjct: 901 FMDIQMPEMDGFE 913
>gi|356513022|ref|XP_003525213.1| PREDICTED: histidine kinase 4-like [Glycine max]
Length = 1011
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/906 (52%), Positives = 625/906 (68%), Gaps = 52/906 (5%)
Query: 79 RVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSM 138
+ W K L+ W+L L+ +I+ M + +R+E LGS+CD+RARMLQDQF+VS+
Sbjct: 33 QAHRAWLPKFLMLWILLMALIGCFIYSKMDADTKVRRKEVLGSLCDQRARMLQDQFSVSV 92
Query: 139 NHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEK 198
NHV A++IL+STFH+ + PSAIDQ TF YT RTAFERPL SGVAYA RV+ SER FEK
Sbjct: 93 NHVHALAILVSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERGTFEK 152
Query: 199 QQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRA 258
Q GW IK M+ EPS + +EYAPVIFAQ+T+S++ SLDM+SG+EDREN+LRA
Sbjct: 153 QHGWVIKTMER---------EPSLVRDEYAPVIFAQETLSYLESLDMMSGEEDRENILRA 203
Query: 259 RASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLV 318
RA+GK VLT+PF LL ++ LGV+LTF VYK +LP T ERI+AT GY+GG FD+ESLV
Sbjct: 204 RATGKAVLTSPFNLLGSHHLGVVLTFPVYKSKLPPKPTMEERIKATAGYVGGSFDVESLV 263
Query: 319 EKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLNFGDPFRKHEMRC 376
E LL QLA Q I VNVYDITN ++P+ MYG+ + + LV S L+FGDP+R H M C
Sbjct: 264 ENLLGQLAGHQAILVNVYDITNSTNPLIMYGNQNEEGDMSLVHESKLDFGDPYRNHTMIC 323
Query: 377 RFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVA 436
R+ QKAP +A++T+ VI LVG+I N I KVE+D+H M ELK +AEAADVA
Sbjct: 324 RYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHQMEELKVRAEAADVA 383
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KSQFLATVSHEIRTPMNG+LGML +L+ TEL TQ+DY +TAQA GKAL++LINEVLD+A
Sbjct: 384 KSQFLATVSHEIRTPMNGILGMLGLLLKTELSSTQRDYAQTAQACGKALIALINEVLDRA 443
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+GKLELEAV F++R+ILDDVLSLFS KS++KG+ELAV++SD+VP+ ++GDPGRFRQI
Sbjct: 444 KIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGLELAVFVSDKVPDIVMGDPGRFRQI 503
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE------------LSSSKN--TLSG 602
+TNL+GNS+KFTE+GHIFV V+L E + ++ +TE +S + N TLSG
Sbjct: 504 VTNLVGNSVKFTERGHIFVKVHLSENSMSTMNGKTEKFINRGSGEPVHMSGAYNSKTLSG 563
Query: 603 YPVADRCHSWKGFK------TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 656
Y AD +SW FK F D S S S + + L+VSVEDTG GIP AQ RI
Sbjct: 564 YEAADERNSWDNFKHLIADEEFFFDASVKKAASESYEQVTLMVSVEDTGIGIPFSAQDRI 623
Query: 657 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG----N 712
F PF+Q S SR +GGTGIGLSISK LV M GEI F+S +GSTF+FTA FG N
Sbjct: 624 FMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISQLQVGSTFSFTAGFGTIEKN 683
Query: 713 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 772
+ +HN + + S F+G+KA+VVD +P+RA V+RYH++RLGIQ +V +
Sbjct: 684 AITDMKKHNLEDL-------PSNFRGLKAIVVDGKPVRAAVTRYHLKRLGIQAKVANSIN 736
Query: 773 QCLSQIASGSKII------NMILVEQEVWE-KDTSVSTLFVNNLRKLGCGFQ-SKLFLLA 824
+ +S + ++I VE++ W + + ++ + ++ G F+ ++ LLA
Sbjct: 737 KAVSLCGKNGSLTSVLFQPDIIFVEKDSWVCGEDEIFNVWQLDWKQNGHMFKIPQMILLA 796
Query: 825 NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS--LRH 882
+I ++ + + +VIMKPLR+SM+AA LQ+ +G G K P+ S +R
Sbjct: 797 TNIGNAEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQHGKDMKPNGSTLVRS 856
Query: 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
LL G+KIL+VDDN VN +VAA LK +GA V C E GK A E+L PH FDACFMDIQMP
Sbjct: 857 LLCGKKILVVDDNVVNRRVAAGALKNFGADVTCAESGKTALEMLQLPHNFDACFMDIQMP 916
Query: 943 EMDGYE 948
EMDG++
Sbjct: 917 EMDGFQ 922
>gi|109631214|gb|ABG35783.1| SHK279 [Striga asiatica]
Length = 984
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/892 (52%), Positives = 618/892 (69%), Gaps = 51/892 (5%)
Query: 87 KVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSI 146
++L W++ S ++ YM + EKR+E L SMC++RARMLQDQF+VS+NHV A++I
Sbjct: 35 RILGFWIMAMLFASSCVYEYMDEEQKEKRKEVLVSMCEQRARMLQDQFSVSVNHVHALAI 94
Query: 147 LISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKR 206
L+STFH KNPSAIDQ TF YT RTAFERPL SGVAYA R+L SEREEFE+Q GWTI+
Sbjct: 95 LVSTFHFDKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRILLSEREEFERQHGWTIRT 154
Query: 207 MDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266
M+ +PSP+ +EYAPVIF+Q+T+S++ SLD++SG+EDREN+LRARA+GK VL
Sbjct: 155 MEK---------KPSPVRDEYAPVIFSQETLSYLGSLDVMSGQEDRENILRARATGKAVL 205
Query: 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLA 326
T PFRLL ++ LGV+LTF VYK +LP N T ERI+AT GYLGG FD+ESLVE LL QLA
Sbjct: 206 TNPFRLLNSH-LGVVLTFPVYKFKLPPNPTVEERIDATAGYLGGAFDVESLVENLLGQLA 264
Query: 327 SKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL--VSTLNFGDPFRKHEMRCRFKQKAPW 384
Q I VNVYD TN S P+ MYG N D + L VS L+FGDPFRKHEM CR+ +AP
Sbjct: 265 GNQAIVVNVYDTTNSSDPLIMYGHNSQDGDMSLKHVSKLDFGDPFRKHEMICRYLMEAPT 324
Query: 385 PLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATV 444
A+ T+ + +I L+G++ + V+ I KVE+D++ M ELK +AEAADVAKSQFLATV
Sbjct: 325 SWHALQTAALVFMIGFLIGYMAYSAVSHIVKVEDDFNKMQELKVQAEAADVAKSQFLATV 384
Query: 445 SHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504
SHEIRTPMNG+LGML +L+DTEL TQ+D+ +TAQ G+AL++LINEVLD+AK+E+GKLE
Sbjct: 385 SHEIRTPMNGILGMLQLLLDTELSSTQRDFAQTAQGCGEALITLINEVLDRAKIEAGKLE 444
Query: 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNS 564
LEAV F+LR+ILDDVLSLFS KS+ KG+ELAV++SD+VPE ++GDPGRFRQ+I NL+GNS
Sbjct: 445 LEAVPFDLRSILDDVLSLFSEKSRQKGIELAVFVSDKVPEIVVGDPGRFRQVIINLVGNS 504
Query: 565 IKFTEKGHIFVTVYLVEEVVDSIEVETELSS-------------SKNTLSGYPVADRCHS 611
+KFTE+GHIFV V+L E+ + + + E S S NTLSG VAD C S
Sbjct: 505 VKFTEEGHIFVQVHLAEQRKPTKDAKIETYSNGDSETTPKSQSWSFNTLSGKQVADNCSS 564
Query: 612 WKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 671
+ F D + ++ ++ + L VSVEDTG GIP +AQ R+FTPFMQ S SR +
Sbjct: 565 LD--EEFLYDPTRDENNNAKSESVRLTVSVEDTGIGIPEQAQKRVFTPFMQADSSTSRNY 622
Query: 672 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNS 731
GGTGIGLSISK LV M G++ F S P +GST +FT F + S+ ++++
Sbjct: 623 GGTGIGLSISKCLVELMGGQMSFNSRPQVGSTSSFTVEFQRSERSEVICLSKSISDE--- 679
Query: 732 VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA-----SGSKIIN 786
V+ +G++A+V+D +P+RA V+ YH++RLGIQ E V L+ A + K+ +
Sbjct: 680 VNVALKGLRAVVIDGKPVRAAVTMYHLRRLGIQSEAVGSIRIGLAFYAKHGSLNDEKVPD 739
Query: 787 MILVEQEVW----EKDTSVSTLFVNNLRKLGCGFQSKL---FLLANSISSSRANTSTDGV 839
M +VE++ W E+D + N GF KL LLA +I+ + +N S
Sbjct: 740 MFIVEKDAWISSEEEDGPMQLSSRQN------GFNCKLPKMILLATNITPTESNRSKTAG 793
Query: 840 SIPSVIMKPLRSSMLAASLQRAMGVGNK---GNIRNWELPSMSLRHLLLGRKILIVDDNN 896
+VIMKPLRSSM+AA LQ+ +G+G+K + RN + + LL G+KIL+VDDN
Sbjct: 794 FADTVIMKPLRSSMVAACLQQVLGIGHKIQNSSPRNGAIAKAKAKGLLRGKKILVVDDNV 853
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VN +VAA L ++GA V CV G +A L PH FDACFMDIQMP+MDG+E
Sbjct: 854 VNRRVAAGALNKFGAEVRCVGSGHEALACLQIPHDFDACFMDIQMPQMDGFE 905
>gi|357138197|ref|XP_003570684.1| PREDICTED: histidine kinase 4-like [Brachypodium distachyon]
Length = 970
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/901 (51%), Positives = 616/901 (68%), Gaps = 51/901 (5%)
Query: 80 VRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMN 139
R W R + W+L S + W + + E+ + L SMC+ERARMLQ+QF V++N
Sbjct: 7 ARRGWRRLAAVAWVLLAVACSAALHWQLRWETMERAEQRLVSMCEERARMLQEQFGVTVN 66
Query: 140 HVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQ 199
HV A++ILISTFH KNPSAIDQ TF +YT RT+FERPL +GVAYA R+ E+E FE+Q
Sbjct: 67 HVHALAILISTFHFEKNPSAIDQDTFAKYTARTSFERPLLNGVAYAQRIFPHEKETFERQ 126
Query: 200 QGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRAR 259
GW +K M+ E +P+++EYAPVIF+QDTVS++ +DM SG+EDREN+LRAR
Sbjct: 127 HGWNMKTMN---------QEAAPLQDEYAPVIFSQDTVSYLARMDMYSGEEDRENILRAR 177
Query: 260 ASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVE 319
A+GK VLT PFRLL +N LGV+LTFAVY+ +L ++A+ ER+EAT GYLGG FD+ESLVE
Sbjct: 178 ATGKPVLTNPFRLLGSNHLGVVLTFAVYRPDLAADASVEERVEATAGYLGGAFDVESLVE 237
Query: 320 KLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDD--GLWLVSTLNFGDPFRKHEMRCR 377
LL +LA Q I VNVYD+TN S P++MYG D GL VS L+FGDPFR+HEMRCR
Sbjct: 238 NLLSKLAGNQDILVNVYDVTNSSEPMAMYGPQSPDGKVGLLHVSMLDFGDPFRRHEMRCR 297
Query: 378 FKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAK 437
++QK P P AI+ +G VI LVG+I A +R KV ED M ELK +AEAADVAK
Sbjct: 298 YRQKPPMPWSAITNPLGAFVIWMLVGYIICAAWSRYDKVTEDCRKMEELKTQAEAADVAK 357
Query: 438 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497
SQFLATVSHEIRTPMNGVLGMLDML+ T+L +TQ+D+ +TAQ G+AL++LIN+VLD+AK
Sbjct: 358 SQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDFAQTAQMCGRALITLINDVLDRAK 417
Query: 498 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 557
+E+G+LELEAV F+LR+++DDV+SLFS KS++K +ELAV++ D VP+ ++GDP RFRQI+
Sbjct: 418 IEAGRLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPKLVVGDPWRFRQIL 477
Query: 558 TNLMGNSIKFTEKGHIFVTVYLVE-------EVVDSI------EVETELSSSKNTLSGYP 604
TNL+GN++KFT++GH+FV V L E +V++ +VE+ + + NTLSG+
Sbjct: 478 TNLVGNAVKFTDRGHVFVRVCLAENSNVEANQVLNVTLNGKDGKVESTANGALNTLSGFQ 537
Query: 605 VADRCHSWKGFKTFNQDGST-------SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 657
AD +SW+ FK D + + +D + L++S+EDTG GIPL AQ R+F
Sbjct: 538 AADERNSWEYFKLLLSDKESLSNELEGEKSNQNDSDHVTLMISIEDTGVGIPLHAQDRVF 597
Query: 658 TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTS 717
TPFMQ S SR +GGTGIGLSISK L G M G+I F S P+IGSTFTF+AV +
Sbjct: 598 TPFMQADSSTSRNYGGTGIGLSISKCLAGLMGGQISFTSRPSIGSTFTFSAVVKRSCKDT 657
Query: 718 NEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ---LQC 774
+ + + ++ ++ + F GMKA++VD R +R+ V+RYH+ RLGI V+VV++ +Q
Sbjct: 658 SSDSKRSLS---ETLPTAFSGMKAILVDGRAVRSAVTRYHLNRLGIIVQVVNNMSVGIQA 714
Query: 775 LS---QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ----SKLFLLANSI 827
S A + +++ +E + W +T + L N L K Q KL LL
Sbjct: 715 FSGQNGAAEPREKPSILFIENDTWRPETDIQLL--NRLHKPRMNGQVHELPKLILL---- 768
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
+S A+ +G V+ KP+R+S +A+ LQ+ + V N PS LR LL+G+
Sbjct: 769 DTSEADKDKNGSIFNVVMCKPIRASTIASCLQQLLKVEIPERKENQNRPSF-LRSLLVGK 827
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
IL+VDDN VNL+VAAA LK+YGA V CVE GK A LL PPH FDACFMD+QMPEMDG+
Sbjct: 828 NILVVDDNKVNLRVAAAALKKYGAKVHCVESGKDAISLLQPPHHFDACFMDVQMPEMDGF 887
Query: 948 E 948
E
Sbjct: 888 E 888
>gi|109631212|gb|ABG35782.1| SHK300 [Striga asiatica]
Length = 974
Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/883 (52%), Positives = 610/883 (69%), Gaps = 49/883 (5%)
Query: 87 KVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSI 146
++L W++F VS ++ M + EKR+E L SMC++RARMLQDQF+VS+NHV A++I
Sbjct: 36 RILGFWIMFMLFVSSCVYENMDEEQKEKRKEVLVSMCEQRARMLQDQFSVSINHVHALAI 95
Query: 147 LISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKR 206
L+STFH KNPSAIDQ TF YT RTAFERPL SGVAYA R+L SEREEFE+Q GWTI+
Sbjct: 96 LVSTFHFYKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRILFSEREEFERQHGWTIRT 155
Query: 207 MDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266
M+ EPSP+ +EYAPVIF Q+TVS++ SLD++SG+EDREN+LRARA+GK VL
Sbjct: 156 MEK---------EPSPVRDEYAPVIFLQETVSYIGSLDVMSGEEDRENILRARATGKAVL 206
Query: 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLA 326
T+PFRLL ++ LGV+LTF VYK +LP N T ERIEAT GYLGG FD+ESL+E LL QLA
Sbjct: 207 TSPFRLLNSH-LGVVLTFPVYKSKLPLNPTVEERIEATAGYLGGPFDVESLIENLLGQLA 265
Query: 327 SKQTIFVNVYDITNLSHPISMYGSNV--SDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPW 384
Q I VNVYD TN S + MYG ++ D L VS L+FGDPFRKHEM CR+ Q+AP
Sbjct: 266 GNQAIVVNVYDATNSSDLLIMYGHHLQHGDMSLKHVSKLDFGDPFRKHEMVCRYLQEAPT 325
Query: 385 PLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATV 444
A+ T+ + +I L+G++ + V+ I KVE+D++ M ELK +AEAADVAKSQFLATV
Sbjct: 326 SWHALQTAALVFMIGFLIGYMAYSAVSHIVKVEDDFNKMQELKVQAEAADVAKSQFLATV 385
Query: 445 SHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504
SHEIRTPMNG+LGML +L+DTEL TQ+D+ +TAQ G+AL++LINEVLD+AK+E+GKLE
Sbjct: 386 SHEIRTPMNGILGMLQLLLDTELSSTQRDFAQTAQGCGEALITLINEVLDRAKIEAGKLE 445
Query: 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNS 564
LEAV F+LR+ILDDVLSLFS KS+ KG+ELAV++SD+VPE ++GDPGRFRQ+I NL+GNS
Sbjct: 446 LEAVPFDLRSILDDVLSLFSEKSRQKGIELAVFVSDKVPEIVVGDPGRFRQVIINLVGNS 505
Query: 565 IKFTEKGHIFVTVYLVEEVVDSIEVETE-------------LSSSKNTLSGYPVADRCHS 611
+KFTE+GHIFV V+L + + + + E S S NTLSG AD S
Sbjct: 506 VKFTEEGHIFVQVHLTAQSKPTKDAKLENLSNGEAEATPKSYSRSFNTLSGKQAADNRSS 565
Query: 612 WKGFKTFNQDGSTSPFKSSSAD------LINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665
W+ + ++ +P + D ++L V VEDTG GIP +AQ R+FTPFMQ
Sbjct: 566 WEILRHLDEKLLYNPSSKAENDNNPKSESVSLTVCVEDTGIGIPEQAQKRVFTPFMQADS 625
Query: 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 725
S SR +GGTGIGLSISK LV M G + F+S+P +GSTF+FT F S NE N+
Sbjct: 626 STSRNYGGTGIGLSISKCLVELMGGRMSFISLPQVGSTFSFTVEF--QSCERNEVNNCVS 683
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII 785
+ ++ +G++A+VVD P+RA V++YH++RLGIQ E + L I++ K+
Sbjct: 684 KTISDELNVALKGLRAVVVDGNPVRAAVTKYHLRRLGIQAEAIGSIHAGL--ISNSGKVA 741
Query: 786 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 845
++ LVE++ W ++ + + K+ LLA +I+ S + + +V+
Sbjct: 742 DIFLVEKDAW----------ISGEEEEMPTNRPKMILLATNITPSESERAKAAGFAETVV 791
Query: 846 MKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905
MKPLRS M+AA LQ+ +G+ K +N S L LL G+KIL+VDDN VN +VAA
Sbjct: 792 MKPLRSRMVAACLQQVLGIDQK--TQNGR--SSGLGRLLSGKKILVVDDNVVNRRVAAGA 847
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L ++GA V C E G +A L PH FDACFMDIQMPEMDG+E
Sbjct: 848 LNKFGAEVKCAESGHEALAFLQIPHDFDACFMDIQMPEMDGFE 890
>gi|356521173|ref|XP_003529232.1| PREDICTED: histidine kinase 4-like [Glycine max]
Length = 987
Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/913 (52%), Positives = 630/913 (69%), Gaps = 53/913 (5%)
Query: 72 YQSIGSKR------VRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDE 125
+ +GSKR W K L+ W+L L+S I+ M +R+E LGS+CD+
Sbjct: 18 HDQMGSKRKYTFIQAHRAWLPKFLLLWILLMALISWCIYSKMDDDTKVRRKEVLGSLCDQ 77
Query: 126 RARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYA 185
RARMLQDQF+VS+NHV A++IL+STFH+ + PSAIDQ TF YT RTAFERPL SGVAYA
Sbjct: 78 RARMLQDQFSVSVNHVHALAILVSTFHYYRYPSAIDQETFAEYTARTAFERPLLSGVAYA 137
Query: 186 VRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDM 245
RV+ SERE FEK+ GW IK M+ + S + +EYAPVIFAQ+TVS++ SLDM
Sbjct: 138 QRVVNSERERFEKEHGWVIKTMER---------KSSLVRDEYAPVIFAQETVSYLESLDM 188
Query: 246 LSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATD 305
+SG+EDREN+LRARA+GK VLT+PF LL ++ LGV+LTF VYK +LP T ERIEAT
Sbjct: 189 MSGEEDRENILRARATGKAVLTSPFSLLGSHHLGVVLTFPVYKSKLPQKPTVEERIEATA 248
Query: 306 GYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STL 363
GY+GG FD+ESLV+ LL QL Q I VNVYDITN ++P+ MYG+ + + LV S L
Sbjct: 249 GYVGGSFDVESLVKNLLGQLDGNQAILVNVYDITNYTNPLVMYGNLYEEGDMSLVHESKL 308
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGM 423
+FGDP+RKH+M CR+ QKAP +A++T+ VI LVG+I N I KVE+D+H M
Sbjct: 309 DFGDPYRKHQMICRYHQKAPTNWIALTTAFLFFVILFLVGYILYGAGNHIVKVEDDFHAM 368
Query: 424 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGK 483
ELK +AEAAD+AKSQFLATVSHEIRTPMNG+LGML +L+DTEL TQ+DY +TAQA GK
Sbjct: 369 EELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGK 428
Query: 484 ALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVP 543
AL++LINEVLD+AK+E+GKLELEAV F+LR+I+DDVLSLFS KS+ KG+ELAV++SD+VP
Sbjct: 429 ALITLINEVLDRAKIEAGKLELEAVPFDLRSIIDDVLSLFSEKSRHKGLELAVFVSDKVP 488
Query: 544 ETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE--EVVDSIEVETELSSSKN--- 598
+ ++GDPGRFRQIITNL+GNS+KFTE+GHIFV V+L + + + + + +T L+ +
Sbjct: 489 DIVMGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLADNRKSIMNGKHDTFLNGESDEVF 548
Query: 599 ---------TLSGYPVADRCHSWKGFK------TFNQDGSTSPFKS-SSADLINLIVSVE 642
TLSG AD +SW FK + D S + S++ + L V VE
Sbjct: 549 HISGDYHFKTLSGCEAADERNSWDNFKHLIADEEYGLDSSRETMAACESSEQVTLRVCVE 608
Query: 643 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 702
DTG GIP AQ IF PF+Q S SR +GGTGIGLSISK LV M G+I F+S P +GS
Sbjct: 609 DTGIGIPFSAQDGIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGS 668
Query: 703 TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 762
TF+FTAV +S + + + + P+S F+GMK +VVD +P+RA V+RYH++RLG
Sbjct: 669 TFSFTAVCEAFKKSSVTNKKKNLEDLPSS----FRGMKVIVVDGKPVRAAVTRYHLKRLG 724
Query: 763 IQVEVVSDQLQCLS------QIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCG 815
I V+V + + ++ + SG ++I+VE++ W + + + +N R +
Sbjct: 725 ILVKVANRISKAVALCGKSGSLKSGMFQPDIIMVEKDTWITGEDGIFNTWKHNGRTIK-- 782
Query: 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 875
K+ LLA +IS++ + + +VIMKPLR+SM+AA LQ+ +G+G K + ++
Sbjct: 783 -MPKMILLATNISNAEFDKAKFTGFTDTVIMKPLRASMVAACLQQVLGMGKKRQL-GKDM 840
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
P+ L LL G+KIL+VDDN VN +VAA LK++GA V C E GK A E+L PH FDAC
Sbjct: 841 PNGFLHSLLYGKKILVVDDNGVNRRVAAGALKKFGADVKCAESGKVALEMLQLPHNFDAC 900
Query: 936 FMDIQMPEMDGYE 948
FMDIQMPEMDG+E
Sbjct: 901 FMDIQMPEMDGFE 913
>gi|162461543|ref|NP_001105913.1| histidine kinase [Zea mays]
gi|89242037|dbj|BAE80689.1| histidine kinase [Zea mays]
Length = 996
Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/895 (53%), Positives = 622/895 (69%), Gaps = 53/895 (5%)
Query: 87 KVLITWLLFWTL--VSLWIFW--YMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQ 142
K++ +L W L +LW+F Y A K EAL SMC+ERARMLQDQF VS+NHV
Sbjct: 38 KLIAAAVLVWVLGSAALWVFLHSYFRHAALRKAEEALVSMCEERARMLQDQFAVSVNHVH 97
Query: 143 AMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGW 202
A++IL++TFH+ K+P A+DQ TF YT RT+FERPL SGVAYA RV+ ++RE FE+ QGW
Sbjct: 98 ALAILVATFHYEKHPPALDQNTFADYTARTSFERPLLSGVAYAQRVVHADREGFERHQGW 157
Query: 203 TIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASG 262
IK M K EPSP ++EYAPV+++Q+TVS++ LDM+SG+EDREN+LR+RASG
Sbjct: 158 IIKTM---------KHEPSPAQDEYAPVVYSQETVSYIEGLDMMSGEEDRENILRSRASG 208
Query: 263 KGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLL 322
K VLT PFRL+ +N LGV+LTF VY +LPS+A +R+ AT GYLGG FD+ESLVE LL
Sbjct: 209 KAVLTRPFRLM-SNHLGVVLTFPVYHADLPSDAKEEDRVAATAGYLGGAFDVESLVENLL 267
Query: 323 HQLASKQTIFVNVYDITNLSHPISMYGSNV--SDDGLWLVSTLNFGDPFRKHEMRCRFKQ 380
QLA Q + +NVYD+TN+S+P+ MYGS V + + L+FGDPFRKH M CR++
Sbjct: 268 RQLAGNQELVINVYDVTNISNPLVMYGSEVPLGNPSPSHICMLDFGDPFRKHHMVCRYRN 327
Query: 381 KAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQF 440
K P AIST G+ VI LVG+I A +R V+ED M ELKK+AEAADVAKSQF
Sbjct: 328 KPHVPWSAISTPSGVFVICMLVGYIAGAAWSRYDNVKEDCRKMEELKKQAEAADVAKSQF 387
Query: 441 LATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500
LATVSHEIRTPMNGVLGMLDML+DT+L TQ+D+ +TAQ GKAL+SLINEVLD+AK+E+
Sbjct: 388 LATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEA 447
Query: 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNL 560
KL+LE+V F+LR+ILDDV+SLFS KS++KG+EL VY+S+RVPE L+GDPGRFRQIITNL
Sbjct: 448 RKLDLESVPFDLRSILDDVISLFSSKSREKGIELDVYVSERVPEILLGDPGRFRQIITNL 507
Query: 561 MGNSIKFTEKGHIFVTVYL-----------VEEVVDSIEVETE------LSSSKNTLSGY 603
+GNSIKFTE+GHIFV V+L VE V + + T S S NTLSG+
Sbjct: 508 VGNSIKFTERGHIFVQVHLADHSNLATESKVEPVANGMNGHTNEKTAVATSVSLNTLSGF 567
Query: 604 PVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
AD +SW+ FK + + S P++S S D + L+VSVEDTG GIPL+AQ+++FTPFMQ
Sbjct: 568 EAADSRNSWENFKLLLSYEKSEMPYESVS-DKVTLVVSVEDTGIGIPLDAQAKVFTPFMQ 626
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
S SRT+GGTGIGLSISK LV M G+I FVS P++GSTFTFTAV S +S
Sbjct: 627 ADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTAVLKR-CDRSAIGDS 685
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA--S 780
+ + P + S F+G+ AL+VD RP+RA V++YH+QRLGI +VV+ L ++ +
Sbjct: 686 KPVMLHP--LPSSFKGLSALLVDRRPVRATVTKYHLQRLGIACDVVATIELALGVLSGRN 743
Query: 781 GSKIIN-----MILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
GS + + M+L+E + W D S+ + + + K+ LLA ++ +
Sbjct: 744 GSSLTSMKQPCMLLIESDSWGFNIDVSLQSRLLEMKQNGHTHVLPKIILLA----AAESG 799
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
+ ++ SVI KPL++S LAA L + +G+ N R+ S SL LLLG+ IL+VD
Sbjct: 800 KLKEHYAVDSVITKPLKASALAACLFQTLGIKQSSNERSDN--SGSLYGLLLGKNILVVD 857
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
DN VNL+VAA LK++GA V CVE GK A LL P++F C MDIQMPEMDG+E
Sbjct: 858 DNKVNLRVAAGTLKKFGAKVECVESGKDALALLHVPYKFHLCLMDIQMPEMDGFE 912
>gi|356524638|ref|XP_003530935.1| PREDICTED: histidine kinase 4-like [Glycine max]
Length = 1016
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/919 (52%), Positives = 627/919 (68%), Gaps = 58/919 (6%)
Query: 72 YQSIGSKR------VRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDE 125
++ GSKR W K L+ W+L L+ +IF M + +R+E LGS+CD+
Sbjct: 20 HEQAGSKRKYTFIQAHRAWLPKFLMLWILLMALIGCFIFSKMDADTKVRRKEVLGSLCDQ 79
Query: 126 RARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYA 185
RARMLQDQF+VS+NHV A++IL+STFH+ + PSAIDQ TF YT RTAFERPL SGVAYA
Sbjct: 80 RARMLQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYA 139
Query: 186 VRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDM 245
RV+ SERE FEKQ GW IK M+ EPS + +EYAPVIF Q+T+S++ S+DM
Sbjct: 140 QRVVNSERETFEKQHGWVIKTMER---------EPSLVRDEYAPVIFVQETLSYLESIDM 190
Query: 246 LSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATD 305
+SG+EDREN+LRARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP T ERI+AT
Sbjct: 191 MSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTMEERIKATA 250
Query: 306 GYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STL 363
GY+GG FD+ESLVE LL QLA Q I VNVYDITN + + MYG+ + + LV S L
Sbjct: 251 GYVGGSFDVESLVENLLGQLAGHQAILVNVYDITNSTDHLIMYGNQNEEGDMSLVHESKL 310
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGM 423
+FGD +RKH M CR+ QKAP +A++T+ VI LVG+I N I KVE+D+H M
Sbjct: 311 DFGDSYRKHTMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHQM 370
Query: 424 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGK 483
ELK +AEAA VAKSQFLATVSHEIRTPMNG+LGML +L+ TEL TQ+DY +TAQA GK
Sbjct: 371 EELKVRAEAAHVAKSQFLATVSHEIRTPMNGILGMLGLLLKTELSSTQRDYAQTAQACGK 430
Query: 484 ALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVP 543
AL++LINEVLD+AK+E+GKLELEAV F++R+ILDDVLSLFS KS++KG+ELAV++SD+VP
Sbjct: 431 ALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGLELAVFVSDKVP 490
Query: 544 ETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE----------- 592
+ ++GDPGRFRQI+TNL+GNS+KFTE+GH+FV V+L E + ++ + E
Sbjct: 491 DIVMGDPGRFRQIVTNLVGNSVKFTERGHVFVKVHLSENRMSTMNGKIEKFLNGGLDEPV 550
Query: 593 -LSSSKN--TLSGYPVADRCHSWKGFK------TFNQDGSTSPFKSSSADLINLIVSVED 643
+S N TLSGY AD +SW FK F D S S S + + L+VSVED
Sbjct: 551 HMSGGYNSKTLSGYEAADERNSWDNFKHLIADEEFFYDASVKRVASESYEQVTLMVSVED 610
Query: 644 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 703
TG GIP AQ RIF PF+Q S SR +GGTGIGLSISK LV M GEI F+S P +GST
Sbjct: 611 TGIGIPFSAQDRIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISQPQVGST 670
Query: 704 FTFTAVFG----NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 759
F+FTA FG N + +HN + + S F+G+KA+VVD +P+RA V+RYH++
Sbjct: 671 FSFTADFGTIKKNAITDMKKHNLEDL-------PSNFRGLKAIVVDGKPVRAAVTRYHLK 723
Query: 760 RLGIQVEVVSDQLQCLSQ------IASGSKIINMILVEQEVWE-KDTSVSTLFVNNLRKL 812
RLGIQ +V + + +S + SG ++I VE++ W + + ++ + ++
Sbjct: 724 RLGIQAKVANSFNKAVSLCGKNGCLTSGLFQPDIIFVEKDSWVCVEDGIFNVWQLDWKQN 783
Query: 813 GCGFQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 871
F+ ++ LLA +I + + + +VIMKPLR+SM+AA LQ+ +G G K
Sbjct: 784 RHIFKIPQMILLATNIGNDEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQHG 843
Query: 872 NWELPSMS--LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 929
P+ S +R LL G+KIL+VDDN VN +VAA LK +GA V C E GK A E+L P
Sbjct: 844 KDMNPNGSTFVRSLLCGKKILVVDDNVVNRRVAAGALKNFGADVTCAESGKTALEMLQLP 903
Query: 930 HQFDACFMDIQMPEMDGYE 948
H FDACFMDIQMPEMDG+E
Sbjct: 904 HNFDACFMDIQMPEMDGFE 922
>gi|118790708|tpd|FAA00251.1| TPA: histidine kinase [Oryza sativa Japonica Group]
Length = 970
Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/907 (51%), Positives = 617/907 (68%), Gaps = 53/907 (5%)
Query: 75 IGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQF 134
+G R W W+L + ++ W++ + ++ E L SMC+ERARMLQ+QF
Sbjct: 1 MGKPEARSGWRNAAAAAWVLVAVACAAYMHWHLRRETMDRAEERLVSMCEERARMLQEQF 60
Query: 135 NVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSERE 194
V++NHV A++ILISTFH K PSAIDQ TF +YT RT+FERPL +GVAYA R+ ERE
Sbjct: 61 GVTVNHVHALAILISTFHFEKFPSAIDQDTFAKYTARTSFERPLLNGVAYAQRIFHHERE 120
Query: 195 EFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDREN 254
FE QQGW +K M K + +P ++EYAPVIF+QDTVS++ +DM+SG+EDREN
Sbjct: 121 MFENQQGWIMKTM---------KRQAAPPQDEYAPVIFSQDTVSYLARIDMMSGEEDREN 171
Query: 255 VLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDI 314
+LRARA+GK VLT PFRLL +N LGV+LTFAVY+ L ++A+ ER+EAT GYLGG FD+
Sbjct: 172 ILRARATGKAVLTNPFRLLGSNHLGVVLTFAVYRPGLAADASVEERVEATAGYLGGAFDV 231
Query: 315 ESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDG---LWLVSTLNFGDPFRK 371
ESLVE LL +LA Q I VNVYD+TN S P++MYG S DG L+ VSTL+FGDPFR
Sbjct: 232 ESLVENLLSKLAGNQDIVVNVYDVTNASEPMAMYGPQ-SPDGKVSLFHVSTLDFGDPFRA 290
Query: 372 HEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAE 431
HEMRCR++QK P P AI+ +G VI LVG+I A +R KV ED M ELK +AE
Sbjct: 291 HEMRCRYRQKPPLPWSAITNPLGTFVIWMLVGYIICAAWSRYDKVSEDCRKMEELKTQAE 350
Query: 432 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINE 491
AADVAKSQFLATVSHEIRTPMNGVLGMLDML+ T+L +TQ+DY +TAQ G+AL++LIN+
Sbjct: 351 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLSMTQKDYAQTAQMCGRALITLIND 410
Query: 492 VLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG 551
VLD+AK+E+GKLELEAV F+LR+++DDV+SLFS KS++K +ELAV++ D VP+ +IGDP
Sbjct: 411 VLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPKVVIGDPW 470
Query: 552 RFRQIITNLMGNSIKFTEKGHIFVTVYLVE-------EVVDSI------EVETELSSSKN 598
R+RQI+TNL+GN++KFTE+GH+FV V L E +V++ +VET + + N
Sbjct: 471 RYRQILTNLVGNAVKFTERGHVFVRVCLAENSKVEANQVLNGTMNGKDGKVETTANGAFN 530
Query: 599 TLSGYPVADRCHSWKGFKTFNQDG-------STSPFKSSSADLINLIVSVEDTGQGIPLE 651
TLSG+ AD ++W FK D + D + L++S+EDTG GIPL
Sbjct: 531 TLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSYQNDCDCVTLMISIEDTGVGIPLH 590
Query: 652 AQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711
AQ R+FTPFMQ S SR +GGTGIGLSISK L M G+I F S P +GSTFTF+AV
Sbjct: 591 AQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSRPFVGSTFTFSAVLK 650
Query: 712 NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 771
++ + + ++ ++ + F+GMKA++VD RP+R V+RYH+ RLGI V+VV++
Sbjct: 651 RSCKDTSSDSKRSLS---EALPTAFKGMKAILVDGRPVRGAVTRYHLNRLGIVVKVVNNL 707
Query: 772 LQCLSQIASGSKI------INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ----SKLF 821
L +A + + ++M+ +E ++W +T + L +N L +L Q KL
Sbjct: 708 SMGLQTLAGQNGVKESREKLSMLFIESDIWRPETDI--LLLNRLHELKNNGQVHELPKLV 765
Query: 822 LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR 881
LL +S A+ G + V+ KP+R+S +A+ LQ+ + V N PS LR
Sbjct: 766 LLV----TSEADKDRYGSAFDIVMYKPIRASTIASCLQQLLKVVMPERKDNQNRPSF-LR 820
Query: 882 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 941
LL+G+ ILIVDDN VNL+VAAA LK+YGA V CVE GK A LL PH FDACFMD+QM
Sbjct: 821 SLLIGKNILIVDDNKVNLRVAAAALKKYGAKVHCVESGKDAVSLLQQPHCFDACFMDVQM 880
Query: 942 PEMDGYE 948
PEMDG+E
Sbjct: 881 PEMDGFE 887
>gi|168018438|ref|XP_001761753.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens
subsp. patens]
gi|162687124|gb|EDQ73509.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens
subsp. patens]
Length = 1022
Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/930 (52%), Positives = 619/930 (66%), Gaps = 69/930 (7%)
Query: 74 SIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQ 133
S R W I W++F VS+ +++ M E+RRE L +MC+ RARML++Q
Sbjct: 30 SEAGSRYGHNWHTIAFIMWVVFMGAVSVSVYFAMRFDMLERRRENLANMCEGRARMLEEQ 89
Query: 134 FNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSER 193
F SMNHV+A++ L++TFH GK PSAI+Q TF Y ERTAFERPL SGVAYA RVL + R
Sbjct: 90 FKASMNHVRALTALLTTFHLGKQPSAINQETFATYAERTAFERPLMSGVAYAERVLHANR 149
Query: 194 EEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRE 253
FE + GWTIK M + E +D +EYAP Q+T+SH+ SLDM+SG+EDRE
Sbjct: 150 NLFESKHGWTIKEMFSKEK---QRDF-----DEYAPTTMTQETLSHLTSLDMMSGQEDRE 201
Query: 254 NVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFD 313
N++RAR SGKG LT PFRLL++ LGV+ TFAVY +LP +AT +RI+AT GYLGG FD
Sbjct: 202 NIIRARESGKGALTNPFRLLESKHLGVVFTFAVYTTDLPEDATKEDRIKATAGYLGGAFD 261
Query: 314 IESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYG-SNVSDDGLWLVSTLNFGDPFRKH 372
+E+LVE LL Q+A Q I VNVYDITN + P+ MYG +NV VS L+FGDP R+H
Sbjct: 262 VETLVENLLRQMAGSQIIAVNVYDITNETMPLVMYGYTNVEKMQSTYVSDLDFGDPARRH 321
Query: 373 EMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEA 432
EMRCRFK+ A P AISTSIGI VIA LVGH+ A+ NRI KVEE+ ELK +A+
Sbjct: 322 EMRCRFKEDALPPWTAISTSIGIFVIAFLVGHMLHASRNRIDKVEENCRIFQELKMRADD 381
Query: 433 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEV 492
A +AKSQFLATVSHEIRTPMNGVLGML ML+DT L+ Q DY +TA ASGKAL++LINEV
Sbjct: 382 AVIAKSQFLATVSHEIRTPMNGVLGMLQMLIDTPLNPAQLDYAQTALASGKALINLINEV 441
Query: 493 LDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGR 552
LDQAK+ESG+LE E V F+LRAILDDVLSLF GKS+ G+ELAVY+S RVP+ L+GDPGR
Sbjct: 442 LDQAKIESGRLEFEHVPFDLRAILDDVLSLFHGKSRASGIELAVYVSARVPKILVGDPGR 501
Query: 553 FRQIITNLMGNSIK---------------FTEKGHIFVTVYLVEEV-----------VDS 586
FRQIITNL+GNSIK FTE GHIFV V+L E+V D+
Sbjct: 502 FRQIITNLVGNSIKVIICSKCLNLLYMSHFTEAGHIFVCVHLNEDVNMVMDGSGGDADDT 561
Query: 587 IEVETE-------LSSSKNTLSGYPVADRCHSWKGFKTF---NQDGSTSPFKSSSADLIN 636
++ E E ++ NTLSG AD +SW+ F+ Q + + S S+D++N
Sbjct: 562 MDGEVESAGPLNDMNYRFNTLSGRETADYRNSWEMFERLLAQEQSHNDTWSYSDSSDVVN 621
Query: 637 LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS 696
L+VSVEDTG GIPL Q R+FTPFMQ S SR +GGTGIGLSIS+ LV M GE+GFVS
Sbjct: 622 LVVSVEDTGVGIPLHVQDRVFTPFMQADSSTSRNYGGTGIGLSISRCLVELMSGEMGFVS 681
Query: 697 IPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN---QPNSVSSEFQGMKALVVDPRPIRAKV 753
P +GSTFTFT + E ++ N Q +++ FQGM+ LVVD R +R +V
Sbjct: 682 RPKVGSTFTFTVELQRVPANIPERILREGRNSYLQTPPLTTCFQGMRVLVVDGRKVRCEV 741
Query: 754 SRYHIQRLGIQVEV---VSDQLQCLSQIAS-------GSKIINMILVEQEVWEKDTSVST 803
+R+H++RLG+QVEV VS+ + LS +A GS+ I MI V+++ W T +
Sbjct: 742 TRHHLKRLGLQVEVAHTVSEAAEILSTVADQGTCSSRGSRNIEMIFVDKDAWGPGTGM-- 799
Query: 804 LFVNNLRK-LGCGFQS--KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 860
N R LG QS ++ L+A S++ + +V+ KPLR+S++AA L++
Sbjct: 800 ----NFRSLLGEMIQSMKRMVLVATSMTDMELGMVKASGFVDTVVRKPLRASLIAACLKQ 855
Query: 861 AMGVGNKGNIRNWELPS--MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVER 918
+GVG++ + EL S SL+ LL G++IL+VDDN VN KVAA L +YGA V CV
Sbjct: 856 ILGVGDRSRDQEQELRSGVTSLQTLLYGKRILVVDDNPVNRKVAAGALHKYGAQVECVYS 915
Query: 919 GKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G+ A + L PPH FDACFMD+QMPEMDG+E
Sbjct: 916 GRAAIQKLKPPHNFDACFMDVQMPEMDGFE 945
>gi|88714405|gb|ABD49494.1| cytokinin receptor 1 [Physcomitrella patens]
Length = 1075
Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/1010 (49%), Positives = 641/1010 (63%), Gaps = 120/1010 (11%)
Query: 32 CFMNYESKDTKTDLRGEVFKMWLNCWERISGNSYYIHHLYYQSIGSKRVRETWWRKVLIT 91
C N SK +K LRG GN Y+H ++ GS R+ WW+ IT
Sbjct: 16 CISNGSSK-SKVVLRG--------------GNGIYMH----RATGSGRLGVKWWKDSGIT 56
Query: 92 --------------------------WLLFWTLVSLWIFWYMSSQATEKRREALGSMCDE 125
W++F VS+ +++ M E+RRE L +MC+
Sbjct: 57 CIKPKQKDSEAGSRYGHNWHTIAFIMWVVFMGAVSVSVYFAMRFDMLERRRENLANMCEG 116
Query: 126 RARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYA 185
RARML++QF SMNHV+A++ L++TFH GK PSAI+Q TF Y ERTAFERPL SGVAYA
Sbjct: 117 RARMLEEQFKASMNHVRALTALLTTFHLGKQPSAINQETFATYAERTAFERPLMSGVAYA 176
Query: 186 VRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDM 245
RVL + R FE + GWTIK M + E +D +EYAP Q+T+SH+ SLDM
Sbjct: 177 ERVLHANRNLFESKHGWTIKEMFSKEK---QRDF-----DEYAPTTMTQETLSHLTSLDM 228
Query: 246 LSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATD 305
+SG+EDREN++RAR SGKG LT PFRLL++ LGV+ TFAVY +LP +AT +RI+AT
Sbjct: 229 MSGQEDRENIIRARESGKGALTNPFRLLESKHLGVVFTFAVYTTDLPEDATKEDRIKATA 288
Query: 306 GYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYG-SNVSDDGLWLVSTLN 364
GYLGG FD+E+LVE LL Q+A Q I VNVYDITN + P+ MYG +NV VS L+
Sbjct: 289 GYLGGAFDVETLVENLLRQMAGSQIIAVNVYDITNETMPLVMYGYTNVEKMQSTYVSDLD 348
Query: 365 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 424
FGDP R+HEMRCRFK+ A P AISTSIGI VIA LVGH+ A+ NRI KVEE+
Sbjct: 349 FGDPARRHEMRCRFKEDALPPWTAISTSIGIFVIAFLVGHMLHASRNRIDKVEENCRIFQ 408
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
ELK +A+ A +AKSQFLATVSHEIRTPMNGVLGML ML+DT L+ Q DY +TA ASGKA
Sbjct: 409 ELKMRADDAVIAKSQFLATVSHEIRTPMNGVLGMLQMLIDTPLNPAQLDYAQTALASGKA 468
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L++LINEVLDQAK+ESG+LE E V F+LRAILDDVLSLF GKS+ G+ELAVY+S RVP+
Sbjct: 469 LINLINEVLDQAKIESGRLEFEHVPFDLRAILDDVLSLFHGKSRASGIELAVYVSARVPK 528
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV-----------VDSIEVETE- 592
L+GDPGRFRQIITNL+GNSIKFTE GHIFV V+L E+V D+++ E E
Sbjct: 529 ILVGDPGRFRQIITNLVGNSIKFTEAGHIFVCVHLNEDVNMVMDGSGGDADDTMDGEVES 588
Query: 593 ------LSSSKNTLSGYPVADRCHSWKGFKTF---NQDGSTSPFKSSSADLINLIVSVED 643
++ NTLSG AD +SW+ F+ Q + + S S+D++NL+VSVED
Sbjct: 589 AGPLNDMNYRFNTLSGRETADYRNSWEMFERLLAQEQSHNDTWSYSDSSDVVNLVVSVED 648
Query: 644 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 703
TG GIPL Q R+FTPFMQ S SR +GGTGIGLSIS+ LV M GE+GFVS P +GST
Sbjct: 649 TGVGIPLHVQDRVFTPFMQADSSTSRNYGGTGIGLSISRCLVELMSGEMGFVSRPKVGST 708
Query: 704 FTFTAVFGNGSSTSNEHNSQQMNN---QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 760
FTFT + E ++ N Q +++ FQGM+ LVVD R +R +V+R+H++R
Sbjct: 709 FTFTVELQRVPANIPERILREGRNSYLQTPPLTTCFQGMRVLVVDGRKVRCEVTRHHLKR 768
Query: 761 LGIQVEV-------------VSDQLQCLSQIASGSKI--INMILVEQEVWEKDTSVSTLF 805
LG+QVEV V+DQ C S+ + GS I MI V+++ W T ++
Sbjct: 769 LGLQVEVAHTVSEAAEILSTVADQGTCSSRGSRGSLAGNIEMIFVDKDAWGPGTGMNFRS 828
Query: 806 VNNLRKLG-CGFQS------------------------KLFLLANSISSSRANTSTDGVS 840
+ +G G+QS ++ L+A S++
Sbjct: 829 LLGESAIGHLGYQSSRTSYQYRTSGRIPFGYPVIQSMKRMVLVATSMTDMELGMVKASGF 888
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS--MSLRHLLLGRKILIVDDNNVN 898
+ +V+ KPLR+S++AA L++ +GVG++ + EL S SL+ LL G++IL+VDDN VN
Sbjct: 889 VDTVVRKPLRASLIAACLKQILGVGDRSRDQEQELRSGVTSLQTLLYGKRILVVDDNPVN 948
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
KVAA L +YGA V CV G+ A + L PPH FDACFMD+QMPEMDG+E
Sbjct: 949 RKVAAGALHKYGAQVECVYSGRAAIQKLKPPHNFDACFMDVQMPEMDGFE 998
>gi|162458745|ref|NP_001105858.1| LOC732762 [Zea mays]
gi|89242033|dbj|BAE80687.1| histidine kinase [Zea mays]
Length = 995
Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/890 (53%), Positives = 615/890 (69%), Gaps = 50/890 (5%)
Query: 88 VLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSIL 147
++ W+L + +++ Y A K E L SMC+ERARMLQDQF VS+NHV A++IL
Sbjct: 43 AVLLWVLGAAALGVFLHSYFRHAALRKAEEGLVSMCEERARMLQDQFAVSVNHVHALAIL 102
Query: 148 ISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRM 207
++TFH+ K P A+DQ TF YT RT+FERPL SGVAYA RV+ +RE FE+QQGW IK M
Sbjct: 103 VATFHYEKRPPALDQNTFADYTARTSFERPLLSGVAYAQRVVHGDRESFERQQGWIIKTM 162
Query: 208 DTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLT 267
K EPSP+++EYAPV+++Q+TVS++ LDM+SG+EDREN+LR+RASGK VLT
Sbjct: 163 ---------KHEPSPVQDEYAPVVYSQETVSYIEGLDMMSGEEDRENILRSRASGKAVLT 213
Query: 268 APFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLAS 327
PFRL+ +N LGV+LTF VY +L S+A +R+ AT GYLGG FD+ESLVE LL QLA
Sbjct: 214 RPFRLM-SNHLGVVLTFPVYHVDLSSDAKEEDRVAATAGYLGGSFDVESLVENLLRQLAG 272
Query: 328 KQTIFVNVYDITNLSHPISMYGSNVS--DDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWP 385
Q + VNVYD+TN S+P+ MYGS VS + + L+FGDPFRKH M CR++ K P
Sbjct: 273 NQELVVNVYDVTNSSNPLVMYGSEVSLGNPSPSHICMLDFGDPFRKHHMVCRYRNKPQLP 332
Query: 386 LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 445
AIS+S G+ VI LVG+I A +R V+ED M ELKK+AEAADVAKSQFLATVS
Sbjct: 333 WSAISSSSGVFVICMLVGYIVGAAWSRYDNVKEDCRKMEELKKQAEAADVAKSQFLATVS 392
Query: 446 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505
HEIRTPMNGVLGMLDML+DT+L TQ+D+ +TAQ GKAL+SLINEVLD+AK+E+GKL+L
Sbjct: 393 HEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKLDL 452
Query: 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 565
E+V F+LR+ILDDV+SLFS KS++KG+ELAVY+S+RVPE L+GDPGRFRQIITNL+GNSI
Sbjct: 453 ESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPELLLGDPGRFRQIITNLVGNSI 512
Query: 566 KFTEKGHIFVTVYL-----------VEEVVDSI------EVETELSSSKNTLSGYPVADR 608
KFTE+GHIFV V+L VE V + + + S S NTLSG+ AD
Sbjct: 513 KFTERGHIFVQVHLADHSNLATEPKVESVANGMNGHKDEKTAVATSVSLNTLSGFEAADS 572
Query: 609 CHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667
+SW+ FK + + + P++S S D + L+VSVEDTG GIPL+AQ+++FTPFMQ S
Sbjct: 573 RNSWENFKLLLSYEKNEMPYESVS-DKVTLVVSVEDTGIGIPLDAQAKVFTPFMQADSST 631
Query: 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 727
SRT+GGTGIGLSISK LV M G+I FVS P++GSTFTFTA S +S+ +
Sbjct: 632 SRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTAALQR-CDRSAIGDSKPVML 690
Query: 728 QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA--SGSKII 785
P + S F+G+ AL+VD RP+RA V++YH+QRLGI +VV+ L ++ +GS +
Sbjct: 691 HP--LPSSFKGLSALLVDRRPVRATVTKYHLQRLGIACDVVATIELALGVLSGRNGSSLT 748
Query: 786 N-----MILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
+ M+L+E + W + D + + + + G + L A +A+ + D
Sbjct: 749 STKQPCMLLIESDSWGFKIDVPLRSRLLEMKQNGPPGLPKTILLAAAESGKLKAHYAVD- 807
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 898
SVI KPL++S LAA L + +G+ N R S SL LLLG+ IL+VDDN VN
Sbjct: 808 ----SVITKPLKASGLAACLFQTLGITQSSNERRDN--SGSLHGLLLGKNILVVDDNKVN 861
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L+VAA LK++GA V CVE GK A L PH+F C MDIQMPEMDG+E
Sbjct: 862 LRVAAGTLKKFGAKVECVESGKDALASLQVPHKFHLCLMDIQMPEMDGFE 911
>gi|89242035|dbj|BAE80688.1| histidine kinase [Zea mays]
Length = 995
Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/890 (53%), Positives = 615/890 (69%), Gaps = 50/890 (5%)
Query: 88 VLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSIL 147
++ W+L + +++ Y A K E L SMC+ERARMLQDQF VS+NHV A++IL
Sbjct: 43 AVLVWVLGALALGVFLHSYFRHAALRKAEEGLVSMCEERARMLQDQFAVSVNHVHALAIL 102
Query: 148 ISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRM 207
++TFH+ K P A+DQ TF YT RT+FERPL SGVAYA RV+ +RE FE+QQGW IK M
Sbjct: 103 VATFHYEKRPPALDQNTFADYTARTSFERPLLSGVAYAQRVVHGDRESFERQQGWIIKTM 162
Query: 208 DTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLT 267
K EPSP+++EYAPV+++Q+TVS++ LDM+SG+EDREN+LR+RASGK VLT
Sbjct: 163 ---------KHEPSPVQDEYAPVVYSQETVSYIEGLDMMSGEEDRENILRSRASGKAVLT 213
Query: 268 APFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLAS 327
PFRL+ +N LGV+LTF VY +L S+A +R+ AT GYLGG FD+ESLVE LL QLA
Sbjct: 214 RPFRLM-SNHLGVVLTFPVYHVDLSSDAKEEDRVAATAGYLGGSFDVESLVENLLRQLAG 272
Query: 328 KQTIFVNVYDITNLSHPISMYGSNVS--DDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWP 385
Q + VNVYD+TN S+P+ MYGS VS + + L+FGDPFRKH M CR++ K P
Sbjct: 273 NQELVVNVYDVTNSSNPLVMYGSEVSLGNPSPSHICMLDFGDPFRKHHMVCRYRNKPQLP 332
Query: 386 LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 445
AIS+S G+ VI LVG+I A +R V+ED M ELKK+AEAADVAKSQFLATVS
Sbjct: 333 WSAISSSSGVFVICMLVGYIVGAAWSRYDNVKEDCRKMEELKKQAEAADVAKSQFLATVS 392
Query: 446 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505
HEIRTPMNGVLGMLDML+DT+L TQ+D+ +TAQ GKAL+SLINEVLD+AK+E+GKL+L
Sbjct: 393 HEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKLDL 452
Query: 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 565
E+V F+LR+ILDDV+SLFS KS++KG+ELAVY+S+RVPE L+GDPGRFRQIITNL+GNSI
Sbjct: 453 ESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPELLLGDPGRFRQIITNLVGNSI 512
Query: 566 KFTEKGHIFVTVYL-----------VEEVVDSI------EVETELSSSKNTLSGYPVADR 608
KFTE+GHIFV V+L VE V + + + S S NTLSG+ AD
Sbjct: 513 KFTERGHIFVQVHLADHSNLATESKVESVANGMNGHKDEKTAVATSVSLNTLSGFEAADS 572
Query: 609 CHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667
+SW+ FK + + + P++S S D + L+VSVEDTG GIPL+AQ+++FTPFMQ S
Sbjct: 573 RNSWENFKLLLSYEKNEMPYESVS-DKVTLVVSVEDTGIGIPLDAQAKVFTPFMQADSST 631
Query: 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 727
SRT+GGTGIGLSISK LV M G+I FVS P++GSTFTFTA S +S+ +
Sbjct: 632 SRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTAALQR-CDRSAIGDSKPVML 690
Query: 728 QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA--SGSKII 785
P + S F+G+ AL+VD RP+RA V++YH+QRLGI +VV+ L ++ +GS +
Sbjct: 691 HP--LPSSFKGLSALLVDRRPVRATVTKYHLQRLGIACDVVATIELALGVLSGRNGSSLT 748
Query: 786 N-----MILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
+ M+L+E + W + D + + + + G + L A +A+ + D
Sbjct: 749 STKQPCMLLIESDSWGFKIDVPLRSRLLEMKQNGPPGLPKTILLAAAESGKLKAHYAVD- 807
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 898
SVI KPL++S LAA L + +G+ N R S SL LLLG+ IL+VDDN VN
Sbjct: 808 ----SVITKPLKASGLAACLFQTLGITQSSNERRDN--SGSLHGLLLGKNILVVDDNKVN 861
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L+VAA LK++GA V CVE GK A L PH+F C MDIQMPEMDG+E
Sbjct: 862 LRVAAGTLKKFGAKVECVESGKDALASLQVPHKFHLCLMDIQMPEMDGFE 911
>gi|414872484|tpg|DAA51041.1| TPA: putative histidine kinase family protein [Zea mays]
Length = 997
Score = 886 bits (2289), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/890 (53%), Positives = 615/890 (69%), Gaps = 50/890 (5%)
Query: 88 VLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSIL 147
++ W+L + +++ Y A K E L SMC+ERARMLQDQF VS+NHV A++IL
Sbjct: 45 AVLVWVLGALALGVFLHSYFRHAALRKAEEGLVSMCEERARMLQDQFAVSVNHVHALAIL 104
Query: 148 ISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRM 207
++TFH+ K P A+DQ TF YT RT+FERPL SGVAYA RV+ +RE FE+QQGW IK M
Sbjct: 105 VATFHYEKRPPALDQNTFADYTARTSFERPLLSGVAYAQRVVHGDRESFERQQGWIIKTM 164
Query: 208 DTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLT 267
K EPSP+++EYAPV+++Q+TVS++ LDM+SG+EDREN+LR+RASGK VLT
Sbjct: 165 ---------KHEPSPVQDEYAPVVYSQETVSYIEGLDMMSGEEDRENILRSRASGKAVLT 215
Query: 268 APFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLAS 327
PFRL+ +N LGV+LTF VY +L S+A +R+ AT GYLGG FD+ESLVE LL QLA
Sbjct: 216 RPFRLM-SNHLGVVLTFPVYHVDLSSDAKEEDRVAATAGYLGGSFDVESLVENLLRQLAG 274
Query: 328 KQTIFVNVYDITNLSHPISMYGSNVS--DDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWP 385
Q + VNVYD+TN S+P+ MYGS VS + + L+FGDPFRKH M CR++ K P
Sbjct: 275 NQELVVNVYDVTNSSNPLVMYGSEVSLGNPSPSHICMLDFGDPFRKHHMVCRYRNKPQLP 334
Query: 386 LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 445
AIS+S G+ VI LVG+I A +R V+ED M ELKK+AEAADVAKSQFLATVS
Sbjct: 335 WSAISSSSGVFVICMLVGYIVGAAWSRYDNVKEDCRKMEELKKQAEAADVAKSQFLATVS 394
Query: 446 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505
HEIRTPMNGVLGMLDML+DT+L TQ+D+ +TAQ GKAL+SLINEVLD+AK+E+GKL+L
Sbjct: 395 HEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKLDL 454
Query: 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 565
E+V F+LR+ILDDV+SLFS KS++KG+ELAVY+S+RVPE L+GDPGRFRQIITNL+GNSI
Sbjct: 455 ESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPELLLGDPGRFRQIITNLVGNSI 514
Query: 566 KFTEKGHIFVTVYL-----------VEEVVDSI------EVETELSSSKNTLSGYPVADR 608
KFTE+GHIFV V+L VE V + + + S S NTLSG+ AD
Sbjct: 515 KFTERGHIFVQVHLADHSNLATEPKVESVANGMNGHKDEKTAVATSVSLNTLSGFEAADS 574
Query: 609 CHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667
+SW+ FK + + + P++S S D + L+VSVEDTG GIPL+AQ+++FTPFMQ S
Sbjct: 575 RNSWENFKLLLSYEKNEMPYESVS-DKVTLVVSVEDTGIGIPLDAQAKVFTPFMQADSST 633
Query: 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 727
SRT+GGTGIGLSISK LV M G+I FVS P++GSTFTFTA S +S+ +
Sbjct: 634 SRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTAALQR-CDRSAIGDSKPVML 692
Query: 728 QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA--SGSKII 785
P + S F+G+ AL+VD RP+RA V++YH+QRLGI +VV+ L ++ +GS +
Sbjct: 693 HP--LPSSFKGLSALLVDRRPVRATVTKYHLQRLGIACDVVATIELALGVLSGRNGSSLT 750
Query: 786 N-----MILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
+ M+L+E + W + D + + + + G + L A +A+ + D
Sbjct: 751 STKQPCMLLIESDSWGFKIDVPLRSRLLEMKQNGPPGLPKTILLAAAESGKLKAHYAVD- 809
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 898
SVI KPL++S LAA L + +G+ N R S SL LLLG+ IL+VDDN VN
Sbjct: 810 ----SVITKPLKASGLAACLFQTLGITQSSNERRDN--SGSLHGLLLGKNILVVDDNKVN 863
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L+VAA LK++GA V CVE GK A L PH+F C MDIQMPEMDG+E
Sbjct: 864 LRVAAGTLKKFGAKVECVESGKDALASLQVPHKFHLCLMDIQMPEMDGFE 913
>gi|162459625|ref|NP_001104859.1| histidine kinase 1 [Zea mays]
gi|12060392|dbj|BAB20583.1| histidine kinase 1 [Zea mays]
Length = 974
Score = 881 bits (2276), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/909 (50%), Positives = 623/909 (68%), Gaps = 55/909 (6%)
Query: 72 YQSIGSKRVRETWWRKVLIT-WLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARML 130
Y++ +KR WWR + W+L + S + W + + ++ E L SMC+ERARML
Sbjct: 5 YRAARTKR----WWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARML 60
Query: 131 QDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLR 190
Q+QF V++NHV A++ILISTF+ K+P AIDQ TF +YT RT+FERPL +GVA+A RV
Sbjct: 61 QEQFGVTVNHVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFH 120
Query: 191 SEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKE 250
ERE FE QQGW + M + EP+P + EYAPVIF+QDTVS++ +DM+SG+E
Sbjct: 121 HEREMFESQQGWVMNTM---------QREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEE 171
Query: 251 DRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGG 310
DREN+ RAR +GK VLT PFRLL +N LGV+LTFAVY+ +LP++A+ +R+EAT GYLGG
Sbjct: 172 DRENIFRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGG 231
Query: 311 IFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL--VSTLNFGDP 368
FD+ESLVE LL +LA Q I VNVYD+TN S + +YG + D+ + VS L+FGDP
Sbjct: 232 AFDVESLVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDP 291
Query: 369 FRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKK 428
FRKHEMRCR++QK P P AI+ +G VI L+G+ A +R KV ED M ELK
Sbjct: 292 FRKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKT 351
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
+AEAADVAKSQFLAT SHEIRTPMNGVLGMLDML+ T+L +TQ+DY +TAQ G+AL++L
Sbjct: 352 QAEAADVAKSQFLATASHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITL 411
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
IN+VLD+AK+E+GKLELEAV F+LR+++DDV+SLFS KS++K +ELAV++ D VP+ +IG
Sbjct: 412 INDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIG 471
Query: 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-------EVVDSI------EVETELSS 595
DP RFRQI+TNL+GN++KFTE+GH+FV V L E +V+ VE+ +
Sbjct: 472 DPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGAMNGKGGRVESTANG 531
Query: 596 SKNTLSGYPVADRCHSWKGFK-------TFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 648
+ NTLSG+ ADR +SW+ FK + D + S +D + L +S+EDTG GI
Sbjct: 532 AFNTLSGFEAADRRNSWQYFKLLLSDKESLLDDLESENSNQSDSDRVTLAISIEDTGVGI 591
Query: 649 PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708
PL+AQ R+FTPFMQ S SR +GGTGIGLSISK L M G+I F S P++GSTFTF+A
Sbjct: 592 PLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTFSA 651
Query: 709 VFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +S+ + ++ + F+GMKA++VD RP+R+ V+RYH++RLGI ++VV
Sbjct: 652 TLKHSHKDISGDSSRSLT---EALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQVV 708
Query: 769 SDQLQCLSQI-----ASGSK-IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS---K 819
++ + A+GS+ +++ +E + W +T V L N+LR+ G S K
Sbjct: 709 NNMNAVVKAFPGQNGAAGSREKASILFIESDFWRPETDVQLL--NHLREQKNGQLSDGHK 766
Query: 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS 879
+ LL +S A+ G V+ KP+R+S +A+S+Q+ + V N PS
Sbjct: 767 VVLLV----TSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPSF- 821
Query: 880 LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939
LR LL+G+ IL+VDDN VNL+VAAA LK+YGA V CVE GK A LL PPH+FDACFMD+
Sbjct: 822 LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFMDV 881
Query: 940 QMPEMDGYE 948
QMPEMDG+E
Sbjct: 882 QMPEMDGFE 890
>gi|224029415|gb|ACN33783.1| unknown [Zea mays]
gi|413938768|gb|AFW73319.1| putative histidine kinase family protein [Zea mays]
Length = 974
Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/911 (50%), Positives = 624/911 (68%), Gaps = 59/911 (6%)
Query: 72 YQSIGSKRVRETWWRKVLIT-WLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARML 130
Y++ +KR WWR + W+L + S + W + + ++ E L SMC+ERARML
Sbjct: 5 YRAARTKR----WWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARML 60
Query: 131 QDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLR 190
Q+QF V++NHV A++ILISTF+ K+P AIDQ TF +YT RT+FERPL +GVA+A RV
Sbjct: 61 QEQFGVTVNHVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFH 120
Query: 191 SEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKE 250
ERE FE QQGW + M + EP+P + EYAPVIF+QDTVS++ +DM+SG+E
Sbjct: 121 HEREMFESQQGWVMNTM---------QREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEE 171
Query: 251 DRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGG 310
DREN+ RAR +GK VLT PFRLL +N LGV+LTFAVY+ +LP++A+ +R+EAT GYLGG
Sbjct: 172 DRENIFRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGG 231
Query: 311 IFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL--VSTLNFGDP 368
FD+ESLVE LL +LA Q I VNVYD+TN S + +YG + D+ + VS L+FGDP
Sbjct: 232 AFDVESLVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDP 291
Query: 369 FRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKK 428
FRKHEMRCR++QK P P AI+ +G VI L+G+ A +R KV ED M ELK
Sbjct: 292 FRKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKT 351
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
+AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+ T+L +TQ+DY +TAQ G+AL++L
Sbjct: 352 QAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITL 411
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
IN+VLD+AK+E+GKLELEAV F+LR+++DDV+SLFS KS++K +ELAV++ D VP+ +IG
Sbjct: 412 INDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIG 471
Query: 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-------EVVDSI------EVETELSS 595
DP RFRQI+TNL+GN++KFTE+GH+FV V L E +V+ VE+ +
Sbjct: 472 DPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNVEANQVLHGAMNGKGGRVESTTNG 531
Query: 596 SKNTLSGYPVADRCHSWKGFKTFNQD---------GSTSPFKSSSADLINLIVSVEDTGQ 646
+ NTLSG+ ADR +SW+ FK D G S S ++ + L +S+EDTG
Sbjct: 532 AFNTLSGFEAADRRNSWQYFKLLLSDKESLLDDLEGENS--NQSDSNHVTLAISIEDTGV 589
Query: 647 GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 706
GIPL+AQ R+FTPFMQ S SR +GGTGIGLSISK L M G+I F S P++GSTFTF
Sbjct: 590 GIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHPSVGSTFTF 649
Query: 707 TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 766
+A + + +S+ + ++ + F+GMKA++VD RP+R+ V+RYH++RLGI ++
Sbjct: 650 SATLKHSYKDISVDSSRSLT---EALPTAFKGMKAILVDGRPVRSAVTRYHLKRLGILLQ 706
Query: 767 VVSDQLQCLSQI-----ASGSK-IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS-- 818
VV++ + A+GS+ +++ +E + W +T V L N+LR+ G S
Sbjct: 707 VVNNMNAVVKAFPGQNGATGSREKASILFIESDFWRPETDVQLL--NHLREQKNGQLSDG 764
Query: 819 -KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 877
K+ LL +S A+ G V+ KP+R+S +A+S+Q+ + V N PS
Sbjct: 765 HKVVLLV----TSEADKDKYGSIFDIVMCKPIRASTIASSIQQLLKVEIAERKDNQNRPS 820
Query: 878 MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937
LR LL+G+ IL+VDDN VNL+VAAA LK+YGA V CVE GK A LL PPH+FDACFM
Sbjct: 821 F-LRSLLVGKNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHRFDACFM 879
Query: 938 DIQMPEMDGYE 948
D+QMPEMDG+E
Sbjct: 880 DVQMPEMDGFE 890
>gi|118790698|tpd|FAA00250.1| TPA: histidine kinase [Oryza sativa Japonica Group]
gi|222625684|gb|EEE59816.1| hypothetical protein OsJ_12359 [Oryza sativa Japonica Group]
Length = 1005
Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/913 (52%), Positives = 617/913 (67%), Gaps = 69/913 (7%)
Query: 84 WWR---KVLITWLLFWTLVS--LW--IFWYMSSQATEKRREALGSMCDERARMLQDQFNV 136
WWR K+ ++ W L S LW + W A K EAL MC+ERARMLQDQF V
Sbjct: 31 WWRVKVKLSTVAVVAWVLASAALWAGLHWRFRRAALHKAEEALVCMCEERARMLQDQFAV 90
Query: 137 SMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEF 196
S+NHV A++IL++TFH+ K+P A+DQ TF Y RT+FERPL SGVAYA RV+ ++RE F
Sbjct: 91 SVNHVHALAILVATFHYDKHPPALDQDTFAVYAARTSFERPLLSGVAYAQRVVHADRESF 150
Query: 197 EKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVL 256
E+QQGW IK M K EPSP ++EYAPVI++Q+T+S++ LD++SG+EDREN+L
Sbjct: 151 ERQQGWIIKTM---------KHEPSPAQDEYAPVIYSQETISYIEGLDVMSGEEDRENIL 201
Query: 257 RARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIES 316
RARA+GK VLT PFRL+ +N LGV+LTF VY +LP++ +R+ AT GYLGG FD+ES
Sbjct: 202 RARATGKAVLTRPFRLM-SNHLGVVLTFPVYLVDLPNDTAVEDRVAATAGYLGGAFDVES 260
Query: 317 LVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVS-----TLNFGDPFRK 371
LVE LL QLA Q + VNVYD+TN S+P+ MYGS V L + S TL+FGDP RK
Sbjct: 261 LVENLLRQLAGNQELVVNVYDVTNHSNPLVMYGSEVP---LGIPSPSHTYTLDFGDPLRK 317
Query: 372 HEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAE 431
H+M CR++ K AI+T G+ VI LVG+I A +R V+ED M LKK+AE
Sbjct: 318 HQMVCRYRNKLHVSWSAITTPSGVFVICMLVGYIIYAAWSRYDNVKEDCRKMEALKKRAE 377
Query: 432 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINE 491
AAD+AKSQFLATVSHEIRTPMNGVLGMLDML+DTEL TQ+DY +TAQ GKAL+SLINE
Sbjct: 378 AADIAKSQFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQVCGKALISLINE 437
Query: 492 VLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG 551
VLD+AK+E+GK++LE+V F+LR+ILDDV+SLFS KS++KG+ELAVY+S+RVPE L+GDPG
Sbjct: 438 VLDRAKIEAGKIDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPEILLGDPG 497
Query: 552 RFRQIITNLMGNSIKFTEKGHIFVTVYL-----------VEEVVDSIE------VETELS 594
RFRQIITNL+GNSIKFTE+GHIFV V+L +E VV+ + + S
Sbjct: 498 RFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATEAKIEPVVNGMNGHKDEAIAIPTS 557
Query: 595 SSKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
S NTLSG+ AD ++W+ FK + + + P++S S D + L+VSVEDTG GIPL AQ
Sbjct: 558 GSHNTLSGFEAADSRNNWENFKLLLSYEKNEMPYESDS-DKVTLVVSVEDTGIGIPLHAQ 616
Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
R+FTPFMQ S SR +GGTGIGLSISK LV M G+I FVS P +GSTFTFTAV
Sbjct: 617 GRVFTPFMQADSSTSRNYGGTGIGLSISKCLVEIMGGQINFVSRPLVGSTFTFTAVLRRC 676
Query: 714 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +S+ + P + S F+G+ AL+VD RP+RA V++YH+QRLGI EVV
Sbjct: 677 DKNAIS-DSKTVALHP--LPSSFKGLSALLVDKRPVRATVTKYHLQRLGITSEVVGTIDP 733
Query: 774 CLSQIAS---------GSKIINMILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQSKLFL 822
++ G K M+L+E + W + D S+ + K+FL
Sbjct: 734 TFGVLSGRNGSSLTSIGKKQPCMLLIESDSWGPQMDVSLHARLQEMKQSDRIHVLPKVFL 793
Query: 823 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM---- 878
L S++ ++ ++ SVI KPL++S LAA L +A+G+ + + + S+
Sbjct: 794 L----SAAESDKVKKIHAVDSVIPKPLKASALAACLFQALGITQPSHEKRDDSGSLHGRD 849
Query: 879 ---SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
SL LLLG+ IL+VDDN VNL+VAA LK+YGA V CVE GK A LL PH+FD C
Sbjct: 850 GSGSLHGLLLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALSLLQVPHKFDLC 909
Query: 936 FMDIQMPEMDGYE 948
MDIQMPEMDG+E
Sbjct: 910 LMDIQMPEMDGFE 922
>gi|218191539|gb|EEC73966.1| hypothetical protein OsI_08865 [Oryza sativa Indica Group]
Length = 985
Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/922 (50%), Positives = 617/922 (66%), Gaps = 68/922 (7%)
Query: 75 IGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQF 134
+G R W W+L + ++ W++ + ++ E L SMC+ERARMLQ+QF
Sbjct: 1 MGKPEARSGWRNAAAAAWVLVAVACAAYMHWHLRRETMDRAEERLVSMCEERARMLQEQF 60
Query: 135 NVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSERE 194
V++NHV A++ILISTFH K PSAIDQ TF +YT RT+FERPL +GVAYA R+ ERE
Sbjct: 61 GVTVNHVHALAILISTFHFEKFPSAIDQDTFAKYTARTSFERPLLNGVAYAQRIFHHERE 120
Query: 195 EFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDREN 254
FE QQGW +K M K + +P ++EYAPVIF+QDTVS++ +DM+SG+EDREN
Sbjct: 121 MFENQQGWIMKTM---------KRQAAPPQDEYAPVIFSQDTVSYLARIDMMSGEEDREN 171
Query: 255 VLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG-------- 306
+LRARA+GK VLT PFRLL +N LGV+LTFAVY+ L ++A+ ER+EAT G
Sbjct: 172 ILRARATGKAVLTNPFRLLGSNHLGVVLTFAVYRPGLAADASVEERVEATAGCLVVVVSS 231
Query: 307 -------YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDG--- 356
YLGG FD+ESLVE LL +LA Q I VNVYD+TN S P++MYG S DG
Sbjct: 232 NQIPTNRYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASEPMAMYGPQ-SPDGKVS 290
Query: 357 LWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKV 416
L+ VSTL+FGDPFR HEMRCR++QK P P AI+ +G VI LVG+I A +R KV
Sbjct: 291 LFHVSTLDFGDPFRAHEMRCRYRQKPPLPWSAITNPLGTFVIWMLVGYIICAAWSRYDKV 350
Query: 417 EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 476
ED M ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+ T+L +TQ+DY +
Sbjct: 351 SEDCRKMEELKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLSMTQKDYAQ 410
Query: 477 TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 536
TAQ G+AL++LIN+VLD+AK+E+GKLELEAV F+LR+++DDV+SLFS KS++K +ELAV
Sbjct: 411 TAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAV 470
Query: 537 YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-------EVVDSI-- 587
++ D VP+ +IGDP R+RQI+TNL+GN++KFTE+GH+FV V L E +V++
Sbjct: 471 FVCDDVPKVVIGDPWRYRQILTNLVGNAVKFTERGHVFVRVCLAENSKVEANQVLNGTMN 530
Query: 588 ----EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDG-------STSPFKSSSADLIN 636
+VET + + NTLSG+ AD ++W FK D + D +
Sbjct: 531 GKDGKVETTANGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSYQNDCDCVT 590
Query: 637 LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS 696
L++S+EDTG GIPL AQ R+FTPFMQ S SR +GGTGIGLSISK L M G+I F S
Sbjct: 591 LMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTS 650
Query: 697 IPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRY 756
P +GSTFTF+AV ++ + + ++ ++ + F+GMKA++VD RP+R V+RY
Sbjct: 651 RPFVGSTFTFSAVLKRSCKDTSSDSKRSLS---EALPTAFKGMKAILVDGRPVRGAVTRY 707
Query: 757 HIQRLGIQVEVVSDQLQCLSQIASGSKI------INMILVEQEVWEKDTSVSTLFVNNLR 810
H+ RLGI V+VV++ L +A + + ++M+ +E ++W +T + L +N L
Sbjct: 708 HLNRLGIVVKVVNNLSMGLQTLAGQNGVKESREKLSMLFIESDIWRPETDI--LLLNRLH 765
Query: 811 KLGCGFQ----SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN 866
+L Q KL LL +S A+ G + V+ KP+R+S +A+ LQ+ + V
Sbjct: 766 ELKNNGQVHELPKLVLLV----TSEADKDRYGSAFDIVMYKPIRASTIASCLQQLLKVVM 821
Query: 867 KGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 926
N PS LR LL+G+ ILIVDDN VNL+VAAA LK+YGA V CVE GK A LL
Sbjct: 822 PERKDNQNRPSF-LRSLLIGKNILIVDDNKVNLRVAAAALKKYGAKVHCVESGKDAVSLL 880
Query: 927 MPPHQFDACFMDIQMPEMDGYE 948
PH FDACFMD+QMPEMDG+E
Sbjct: 881 QQPHCFDACFMDVQMPEMDGFE 902
>gi|357521451|ref|XP_003631014.1| Histidine kinase [Medicago truncatula]
gi|355525036|gb|AET05490.1| Histidine kinase [Medicago truncatula]
Length = 1029
Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/944 (51%), Positives = 636/944 (67%), Gaps = 85/944 (9%)
Query: 73 QSIGSKR-----VRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERA 127
+ G+KR W K++ W+L L+S I+ M +R+E LGS+CD+RA
Sbjct: 22 EQTGNKRYTFIQAHRAWLLKLMFLWILLMALISRIIYSKMDVGTKVRRKEVLGSLCDQRA 81
Query: 128 RMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVR 187
RMLQDQF+VS+NHV A++IL+STFH+ +NPSAIDQ TF YT RTAFERPL SGVAYA R
Sbjct: 82 RMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLSGVAYAQR 141
Query: 188 VLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLS 247
V+ SERE+FEKQ G IK M+ E SP+ +EYAPVIFAQ+TVS++ S+DM+S
Sbjct: 142 VVNSEREQFEKQHGVVIKTMER---------EASPVRDEYAPVIFAQETVSYLESIDMMS 192
Query: 248 GKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG- 306
G+EDREN++RARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP N T E I+AT G
Sbjct: 193 GEEDRENIMRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTTEELIKATAGV 252
Query: 307 -------------------------YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNL 341
Y+GG FD+ESLVE LL QLA Q I VNVYD+TN
Sbjct: 253 IDTTSIIELKKTVSVTRLVFGYILLYVGGSFDVESLVENLLGQLAGHQAILVNVYDVTNS 312
Query: 342 SHPISMYGSNVSDDGLWLV--STLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIA 399
S P+ MYG+ + + LV S L+FGDP+RKH+M CR+ QKAP A+ST+I VI
Sbjct: 313 SDPLIMYGNQYEEGDVSLVHESKLDFGDPYRKHQMICRYHQKAPPNWTALSTAILFFVIL 372
Query: 400 SLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGML 459
L+G+I N I KVE+D+H M ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML
Sbjct: 373 LLIGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGML 432
Query: 460 DMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 519
+L+ TEL+ TQ+DY +TAQA GKAL++LINEVLD+AK+E+GKLELEAV F+LR+ILDDV
Sbjct: 433 GLLLRTELNSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDV 492
Query: 520 LSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL 579
LSLFS KS+ KG+ELAV++SD+VP+ ++GDPGRFRQI+TNL+GNS+KFTE+GHIFV V+L
Sbjct: 493 LSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHL 552
Query: 580 VE--EVVDSIEVET----------ELSSSKN--TLSGYPVADRCHSWKGF------KTFN 619
E + V + + ET S N TLSGY AD ++W F + F
Sbjct: 553 SENRKPVTNGKHETYRNGGSEEVVHASGGYNLKTLSGYEAADERNNWDNFNHLIADEEFF 612
Query: 620 QDGSTSPFKSSS-ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGL 678
D ST S+ + + L+V VEDTG GIP AQ RIF PF+Q S SR +GGTGIGL
Sbjct: 613 CDASTKKVASNEFYEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGL 672
Query: 679 SISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG----NGSSTSNEHNSQQMNNQPNSVSS 734
SISK LV M G+I F+S P +GSTF+FTA FG N + + N + + S
Sbjct: 673 SISKCLVELMGGQINFISRPQVGSTFSFTADFGIFKKNPITEVKKVNYEDL-------PS 725
Query: 735 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ----CLSQIASGSKII--NMI 788
F+G+KA+VVD +P+RA V+RYH++RLGIQV+V + + C AS + + ++I
Sbjct: 726 SFRGLKAVVVDGKPVRAAVTRYHLKRLGIQVKVANAINKAVSLCGKNGASSTGLFQPDII 785
Query: 789 LVEQEVWE-KDTSVSTLFVNNLRKLGCGFQ-SKLFLLANSISSSRANTSTDGVSIPSVIM 846
VE++ W + + ++ + ++ G F+ ++ LLA +IS+ + + +VIM
Sbjct: 786 FVEKDSWVCGEDGIFSVRQLDWKQNGHIFKMPQMILLATNISNDEFDKAKSAGFSDTVIM 845
Query: 847 KPLRSSMLAASLQRAMGVGNKGNIRNWELP--SMSLRHLLLGRKILIVDDNNVNLKVAAA 904
KPLR+SM+ A LQ+ +G G K + E+P S S+R LL G+KIL+VDDN VN +VAA
Sbjct: 846 KPLRASMVGACLQQVLGTGKKRQL-GKEMPNGSTSVRSLLFGKKILVVDDNVVNRRVAAG 904
Query: 905 GLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
LK +GA V C + GK A E+L PH+FDACFMDIQMPEMDG+E
Sbjct: 905 ALKNFGADVKCADSGKAALEMLQFPHKFDACFMDIQMPEMDGFE 948
>gi|242066054|ref|XP_002454316.1| hypothetical protein SORBIDRAFT_04g028550 [Sorghum bicolor]
gi|241934147|gb|EES07292.1| hypothetical protein SORBIDRAFT_04g028550 [Sorghum bicolor]
Length = 973
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/902 (50%), Positives = 616/902 (68%), Gaps = 53/902 (5%)
Query: 79 RVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSM 138
R W W+L + + W Q+ ++ E L SMC+ERARMLQ+QF V++
Sbjct: 9 RTNRRWRGLAAAAWVLIAVAGAAVMHWTQRRQSMDRAEERLVSMCEERARMLQEQFGVTV 68
Query: 139 NHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEK 198
NHV A++ILI+TF++ K+P AID TF YT RT+FERPL +GVAYA RV ERE FE
Sbjct: 69 NHVHAIAILIATFNYEKSPPAIDPDTFATYTARTSFERPLLNGVAYAQRVFHHEREMFES 128
Query: 199 QQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRA 258
QQGW + M + EP+P +EYAPVIF+QDTVS++ +DM+SG+ED+EN+LRA
Sbjct: 129 QQGWIMNTM---------QREPAPPRDEYAPVIFSQDTVSYLARIDMMSGEEDQENILRA 179
Query: 259 RASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLV 318
R +GK VLT PFRLL +N LGV+LTFAVY+ +LP++A+ +R+EAT GYLGG FD+ESLV
Sbjct: 180 RTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGGGFDVESLV 239
Query: 319 EKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL-VSTLNFGDPFRKHEMRCR 377
E LL +LA Q I VNVYD+TN S P+++YG ++ D+ + L VS L+FGDPFR+HEMRCR
Sbjct: 240 ENLLSKLAGNQDIVVNVYDVTNASEPMALYGPSILDEQVPLHVSMLDFGDPFRRHEMRCR 299
Query: 378 FKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAK 437
++QK P P I+ +G+ VI L+G+ A +R KV ED M ELK +AEAADVAK
Sbjct: 300 YRQKPPIPWSTITNPLGLFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAK 359
Query: 438 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497
SQFLATVSHEIRTPMNGVLGMLDML+ T+L +TQ+DY +TAQ G+AL++LIN+VLD+AK
Sbjct: 360 SQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLINDVLDRAK 419
Query: 498 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 557
+E+GKLELEAV F+LR+++DDV+SLFS KS++K +ELAV++ D VP+ ++GDP RFRQI+
Sbjct: 420 IEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPKVVLGDPWRFRQIL 479
Query: 558 TNLMGNSIKFTEKGHIFVTVYLVE-------EVVDSI------EVETELSSSKNTLSGYP 604
TNL+GN++KFTE+GH+FV V L E +V+ +VE+ + + NTLSG+
Sbjct: 480 TNLVGNAVKFTERGHVFVRVCLAENSNMEANQVLHGTMNGKDGKVESTTNGAFNTLSGFE 539
Query: 605 VADRCHSWKGFKTF---------NQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 655
ADR +SW+ FK + +G S S +D + L +S+EDTG GIPL+AQ R
Sbjct: 540 AADRRNSWQYFKLLLSNKESLLDDLEGENSNL--SDSDHVTLAISIEDTGVGIPLQAQDR 597
Query: 656 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS 715
+FTPFMQ S SR +GGTGIGLSISK L M G+I F S P +GSTFTF+A
Sbjct: 598 VFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSRPFVGSTFTFSATLKRSYK 657
Query: 716 TSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 775
+ +S+ ++ ++ + F+GMKA+++D RP+R+ V++YH++RLGI V+VV++ +
Sbjct: 658 DISVDSSRSLS---EALPTAFKGMKAILIDGRPVRSAVTKYHLKRLGIIVQVVNNMSTVV 714
Query: 776 SQIA--SGSKI----INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS---KLFLLANS 826
+G+ + M+ +E + W +T V L N+LR+ G S K+ LL
Sbjct: 715 KAFPGQNGATVSREKATMLFIESDFWRPETDVQLL--NHLREHKNGLLSDAPKVVLLV-- 770
Query: 827 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG 886
+S A+ G V+ KP+R+S +A+S+Q+ + V N PS LR LL+G
Sbjct: 771 --TSEADKDNYGSIFDIVMCKPIRASTIASSIQQLLKVEMPKRKENQNRPSF-LRSLLVG 827
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+ IL+VDDN VNL+VAAA LK+YGA V CVE GK A LL PPH F ACFMD+QMPEMDG
Sbjct: 828 KNILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHSFHACFMDVQMPEMDG 887
Query: 947 YE 948
+E
Sbjct: 888 FE 889
>gi|357117708|ref|XP_003560605.1| PREDICTED: histidine kinase 4-like [Brachypodium distachyon]
Length = 997
Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/884 (53%), Positives = 602/884 (68%), Gaps = 55/884 (6%)
Query: 100 SLWI--FWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNP 157
+LW+ W A K E + MC+ERARMLQDQF VS+NHV A++IL++TFH+ K P
Sbjct: 50 ALWLGLHWRFRRAALRKAEEGIVCMCEERARMLQDQFAVSVNHVHALAILVATFHYEKQP 109
Query: 158 SAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHK 217
A+DQ TF YT RT+FERPL SGVAYA RV+ ++RE FE+QQGW IK M K
Sbjct: 110 PALDQDTFADYTARTSFERPLLSGVAYAQRVMNADRESFERQQGWIIKTM---------K 160
Query: 218 DEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNR 277
EPSP+++EYAPVI++Q+TVS++ LDM+SG+EDREN+LR+RA+GK VLT PFRL+ +N
Sbjct: 161 HEPSPVQDEYAPVIYSQETVSYIEGLDMMSGEEDRENILRSRATGKAVLTRPFRLM-SNH 219
Query: 278 LGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYD 337
LGV+LTF VY +LP +A +R+ AT GYLGG FD+ESLVE LL QLA Q + VNVYD
Sbjct: 220 LGVVLTFPVYLVDLPPDAKVEDRVAATAGYLGGAFDVESLVENLLRQLAGNQELVVNVYD 279
Query: 338 ITNLSHPISMYGSNV--SDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGI 395
+TN S+P+ MYGS V + L+FGDPFRKH M CR++ K P AI+T G+
Sbjct: 280 VTNHSNPLVMYGSEVPLGAPSPSHICMLDFGDPFRKHHMICRYRNKHHVPWSAITTPSGV 339
Query: 396 LVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGV 455
VI LVG+I A V+ED M LKK+AEAADVAKSQFLATVSHEIRTPMNGV
Sbjct: 340 FVICMLVGYIIYAAWTHYDNVKEDCRKMEALKKRAEAADVAKSQFLATVSHEIRTPMNGV 399
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
LGMLDML+DTEL TQ+DY +TAQ GKAL+SLINEVLD+AK+E+ KLELE+V F+LR+I
Sbjct: 400 LGMLDMLLDTELKSTQRDYAQTAQVCGKALISLINEVLDRAKIEARKLELESVPFDLRSI 459
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
LDDV+SLFS KS +KG+ELAVY+S+RVPE L+GDPGRFRQIITNL+GNSIKFTE+GHIFV
Sbjct: 460 LDDVVSLFSSKSSEKGIELAVYVSERVPELLLGDPGRFRQIITNLVGNSIKFTERGHIFV 519
Query: 576 TVYL-----------VEEVVDSI-----EVETELSS-SKNTLSGYPVADRCHSWKGFK-T 617
V+L VE VV+ I E T SS S NTLSG+ AD +SW+ FK
Sbjct: 520 QVHLADHSNLATEAKVEPVVNGINGHKDETSTISSSVSHNTLSGFEAADSRNSWENFKLL 579
Query: 618 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 677
+ + + P+ S S D + L+VSVEDTG GIP+ AQ R+FTPFMQ S SR +GGTGIG
Sbjct: 580 LSYETNEMPYGSES-DKVTLVVSVEDTGIGIPIHAQDRVFTPFMQADSSTSRNYGGTGIG 638
Query: 678 LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP--NSVSSE 735
LSIS+ LV M G+I FVS P +GSTFTFTAV E N+ ++ + + S
Sbjct: 639 LSISQCLVELMGGQINFVSRPQVGSTFTFTAVL-----QRCERNAISVSKSALLHPLPSS 693
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA--SGS-------KIIN 786
F+G+ +L+VD RP+RA V++YH+QRLGI + V L ++ +GS K I+
Sbjct: 694 FKGLSSLLVDKRPVRATVTKYHLQRLGIASKSVGTIELALGALSGRNGSLLTSMPRKQIS 753
Query: 787 MILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
M+L+E + W + D + T + + + LLA S+ ++ ++ SV
Sbjct: 754 MLLIESDSWGLKMDVPLHTRLLEMKQNGSETVFPPVILLA----SAESDKMKAKYAVDSV 809
Query: 845 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAA 904
I KPL++S LAA L +A+G+ R S L LLLG+ IL+VDDN VNL+VAA
Sbjct: 810 ITKPLKASTLAACLFQALGISITQAHREKHHDSSPLHGLLLGKNILVVDDNKVNLRVAAG 869
Query: 905 GLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
LK+YGA V CVE GK A LL PH+FD C MDIQMPEMDG+E
Sbjct: 870 TLKKYGAKVECVESGKDALALLQVPHKFDLCLMDIQMPEMDGFE 913
>gi|46390553|dbj|BAD16039.1| putative histidine kinase 1 [Oryza sativa Japonica Group]
Length = 984
Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/921 (50%), Positives = 617/921 (66%), Gaps = 67/921 (7%)
Query: 75 IGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQF 134
+G R W W+L + ++ W++ + ++ E L SMC+ERARMLQ+QF
Sbjct: 1 MGKPEARSGWRNAAAAAWVLVAVACAAYMHWHLRRETMDRAEERLVSMCEERARMLQEQF 60
Query: 135 NVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSERE 194
V++NHV A++ILISTFH K PSAIDQ TF +YT RT+FERPL +GVAYA R+ ERE
Sbjct: 61 GVTVNHVHALAILISTFHFEKFPSAIDQDTFAKYTARTSFERPLLNGVAYAQRIFHHERE 120
Query: 195 EFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDREN 254
FE QQGW +K M K + +P ++EYAPVIF+QDTVS++ +DM+SG+EDREN
Sbjct: 121 MFENQQGWIMKTM---------KRQAAPPQDEYAPVIFSQDTVSYLARIDMMSGEEDREN 171
Query: 255 VLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDI 314
+LRARA+GK VLT PFRLL +N LGV+LTFAVY+ L ++A+ ER+EAT GYLGG FD+
Sbjct: 172 ILRARATGKAVLTNPFRLLGSNHLGVVLTFAVYRPGLAADASVEERVEATAGYLGGAFDV 231
Query: 315 ESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDG---LWLVSTLNFGDPFRK 371
ESLVE LL +LA Q I VNVYD+TN S P++MYG S DG L+ VSTL+FGDPFR
Sbjct: 232 ESLVENLLSKLAGNQDIVVNVYDVTNASEPMAMYGPQ-SPDGKVSLFHVSTLDFGDPFRA 290
Query: 372 HEMRC--RFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKK 429
HEMRC R++QK P P AI+ +G VI LVG+I A +R KV ED M ELK +
Sbjct: 291 HEMRCRSRYRQKPPLPWSAITNPLGTFVIWMLVGYIICAAWSRYDKVSEDCRKMEELKTQ 350
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVL------------GMLDMLMDTELDVTQQDYVRT 477
AEAADVAKSQFLATVSHEIRTPMNGVL GMLDML+ T+L +TQ+DY +T
Sbjct: 351 AEAADVAKSQFLATVSHEIRTPMNGVLVVQRSKILPFDVGMLDMLLGTDLSMTQKDYAQT 410
Query: 478 AQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVY 537
AQ G+AL++LIN+VLD+AK+E+GKLELEAV F+LR+++DDV+SLFS KS++K +ELAV+
Sbjct: 411 AQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVF 470
Query: 538 ISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-------EVVDSI--- 587
+ D VP+ +IGDP R+RQI+TNL+GN++KFTE+GH+FV V L E +V++
Sbjct: 471 VCDDVPKVVIGDPWRYRQILTNLVGNAVKFTERGHVFVRVCLAENSKVEANQVLNGTMNG 530
Query: 588 ---EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDG-------STSPFKSSSADLINL 637
+VET + + NTLSG+ AD ++W FK D + D + L
Sbjct: 531 KDGKVETTANGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSYQNDCDCVTL 590
Query: 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697
++S+EDTG GIPL AQ R+FTPFMQ S SR +GGTGIGLSISK L M G+I F S
Sbjct: 591 MISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSR 650
Query: 698 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 757
P +GSTFTF+AV ++ + + ++ ++ + F+GMKA++VD RP+R V+RYH
Sbjct: 651 PFVGSTFTFSAVLKRSCKDTSSDSKRSLS---EALPTAFKGMKAILVDGRPVRGAVTRYH 707
Query: 758 IQRLGIQVEVVSDQLQCLSQIASGSKI------INMILVEQEVWEKDTSVSTLFVNNLRK 811
+ RLGI V+VV++ L +A + + ++M+ +E ++W +T + L +N L +
Sbjct: 708 LNRLGIVVKVVNNLSMGLQTLAGQNGVKESREKLSMLFIESDIWRPETDI--LLLNRLHE 765
Query: 812 LGCGFQ----SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNK 867
L Q KL LL +S A+ G + V+ KP+R+S +A+ LQ+ + V
Sbjct: 766 LKNNGQVHELPKLVLLV----TSEADKDRYGSAFDIVMYKPIRASTIASCLQQLLKVVMP 821
Query: 868 GNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 927
N PS LR LL+G+ ILIVDDN VNL+VAAA LK+YGA V CVE GK A LL
Sbjct: 822 ERKDNQNRPSF-LRSLLIGKNILIVDDNKVNLRVAAAALKKYGAKVHCVESGKDAVSLLQ 880
Query: 928 PPHQFDACFMDIQMPEMDGYE 948
PH FDACFMD+QMPEMDG+E
Sbjct: 881 QPHCFDACFMDVQMPEMDGFE 901
>gi|113911570|gb|ABI48271.1| histidine kinase 1 [Lotus japonicus]
gi|118140476|emb|CAL18381.1| cytokinin receptor 1 [Lotus japonicus]
gi|118140478|emb|CAL18382.1| cytokinin receptor 1 [Lotus japonicus]
Length = 993
Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/894 (52%), Positives = 605/894 (67%), Gaps = 49/894 (5%)
Query: 84 WWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQA 143
W+ +L W + I+ M ++ +R+E LGS+CD+RARMLQDQF+VS+NHV A
Sbjct: 37 WFLPLLFVWFIVMAAFGACIYHKMDAETKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHA 96
Query: 144 MSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWT 203
++IL+STFH+ +N SAIDQ TF YT RTAFERPL SGVAYA RV+ SERE FEKQ GW
Sbjct: 97 LAILVSTFHYYRNTSAIDQETFAEYTARTAFERPLMSGVAYAQRVVHSERERFEKQHGWV 156
Query: 204 IKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGK 263
IK M+ PS + +EYA VIFAQ+TVS++ S+DM+SG+EDREN+LRARA+GK
Sbjct: 157 IKTMERV---------PSGVRDEYAAVIFAQETVSYLESIDMMSGEEDRENILRARATGK 207
Query: 264 GVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLH 323
VLT+PFRLL ++ LGV+LTF VYK +LP T E I+A GY+GG FD+ESLVE LL
Sbjct: 208 AVLTSPFRLLDSHHLGVVLTFPVYKSKLPPEPTTEEVIKAIAGYIGGSFDVESLVENLLG 267
Query: 324 QLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLNFGDPFRKHEMRCRFKQK 381
QLA Q I V VYDITN S P+ MYGS + + LV S L+FGDP+RKH M CR+ Q+
Sbjct: 268 QLAGNQAILVKVYDITNSSDPLIMYGSQYEEGDMSLVHESKLDFGDPYRKHHMICRYHQQ 327
Query: 382 APWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFL 441
AP +A +T+ VI LVG+I A I KVE+DY+ M +LK KAEAAD+AKSQFL
Sbjct: 328 APTNWIAYTTAFLFFVILCLVGYILYAAGTHIVKVEDDYNAMQDLKVKAEAADIAKSQFL 387
Query: 442 ATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 501
ATVSHEIRTPMNG+LGML +L+ TEL TQ+DY +TAQA GKAL++LINEVLD+AK+E+G
Sbjct: 388 ATVSHEIRTPMNGILGMLGLLLRTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAG 447
Query: 502 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLM 561
KLELEAV F+LR+ILDDVLSLFS KS+ KG+ELAV++SD+VP+ ++GDPGRFRQI+TNL+
Sbjct: 448 KLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLV 507
Query: 562 GNSIKFTEKGHIFVTVYLVEEVVDSIEVETE------------LSSSKN--TLSGYPVAD 607
GNS+KFTE+GHIFV V+L E+ ++ + E +S S N TLSGY AD
Sbjct: 508 GNSVKFTERGHIFVKVHLAEKRQCTMNGKCETFLNGGCDDVLHVSGSYNLKTLSGYEAAD 567
Query: 608 RCHSWKGFK------TFNQDGSTSPFKSS-SADLINLIVSVEDTGQGIPLEAQSRIFTPF 660
+SW FK F D S SS S + + L+VSVEDTG GI AQ IF PF
Sbjct: 568 ERNSWDNFKHHIADEEFFFDASVKKLASSESYEQVTLMVSVEDTGIGISFSAQDSIFMPF 627
Query: 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 720
+Q S SR +GGTGIGLSISK LV M G+I F+S P +GSTF+FTA FG S
Sbjct: 628 VQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGTFKKNSTT- 686
Query: 721 NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 780
+ +++N + + S F+G+KA+VVD +P+RA V+RYH++RLGIQ +V + +S
Sbjct: 687 DMKKLNFE--DLPSSFRGLKAIVVDGKPVRAAVTRYHLKRLGIQAKVAISINKAVSLCGK 744
Query: 781 GSKII------NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 834
+ ++I VE++ W S + N K+ ++ LLA +I ++ +
Sbjct: 745 NGSLTSALFQPDIIFVEKDSW---VSGEDGGIFNAFKM-----PQMILLATNICNAEFDK 796
Query: 835 STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDD 894
+ +VIMKPLR+SMLAA LQ+ G G S+R LL G+KIL+VDD
Sbjct: 797 AKAAGFSDTVIMKPLRASMLAACLQQVFGTGKTRQFGKDMSNGSSVRSLLCGKKILVVDD 856
Query: 895 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
N VN +VAA LK +GA V C GK A E+L PH FDACFMDIQMPEMDG+E
Sbjct: 857 NLVNRRVAAGALKNFGADVKCAASGKAALEMLQYPHDFDACFMDIQMPEMDGFE 910
>gi|108710768|gb|ABF98563.1| cytokinin receptor CRE1b, putative, expressed [Oryza sativa
Japonica Group]
Length = 1013
Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/921 (51%), Positives = 617/921 (66%), Gaps = 77/921 (8%)
Query: 84 WWR---KVLITWLLFWTLVS--LW--IFWYMSSQATEKRREALGSMCDERARMLQDQFNV 136
WWR K+ ++ W L S LW + W A K EAL MC+ERARMLQDQF V
Sbjct: 31 WWRVKVKLSTVAVVAWVLASAALWAGLHWRFRRAALHKAEEALVCMCEERARMLQDQFAV 90
Query: 137 SMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEF 196
S+NHV A++IL++TFH+ K+P A+DQ TF Y RT+FERPL SGVAYA RV+ ++RE F
Sbjct: 91 SVNHVHALAILVATFHYDKHPPALDQDTFAVYAARTSFERPLLSGVAYAQRVVHADRESF 150
Query: 197 EKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVL 256
E+QQGW IK M K EPSP ++EYAPVI++Q+T+S++ LD++SG+EDREN+L
Sbjct: 151 ERQQGWIIKTM---------KHEPSPAQDEYAPVIYSQETISYIEGLDVMSGEEDRENIL 201
Query: 257 RARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIES 316
RARA+GK VLT PFRL+ +N LGV+LTF VY +LP++ +R+ AT GYLGG FD+ES
Sbjct: 202 RARATGKAVLTRPFRLM-SNHLGVVLTFPVYLVDLPNDTAVEDRVAATAGYLGGAFDVES 260
Query: 317 LVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVS-----TLNFGDPFRK 371
LVE LL QLA Q + VNVYD+TN S+P+ MYGS V L + S TL+FGDP RK
Sbjct: 261 LVENLLRQLAGNQELVVNVYDVTNHSNPLVMYGSEVP---LGIPSPSHTYTLDFGDPLRK 317
Query: 372 HEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAE 431
H+M CR++ K AI+T G+ VI LVG+I A +R V+ED M LKK+AE
Sbjct: 318 HQMVCRYRNKLHVSWSAITTPSGVFVICMLVGYIIYAAWSRYDNVKEDCRKMEALKKRAE 377
Query: 432 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINE 491
AAD+AKSQFLATVSHEIRTPMNGVLGMLDML+DTEL TQ+DY +TAQ GKAL+SLINE
Sbjct: 378 AADIAKSQFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQVCGKALISLINE 437
Query: 492 VLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG 551
VLD+AK+E+GK++LE+V F+LR+ILDDV+SLFS KS++KG+ELAVY+S+RVPE L+GDPG
Sbjct: 438 VLDRAKIEAGKIDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPEILLGDPG 497
Query: 552 RFRQIITNLMGNSIK--------FTEKGHIFVTVYL-----------VEEVVDSIE---- 588
RFRQIITNL+GNSIK FTE+GHIFV V+L +E VV+ +
Sbjct: 498 RFRQIITNLVGNSIKITIFTLSQFTERGHIFVQVHLADHSNLATEAKIEPVVNGMNGHKD 557
Query: 589 --VETELSSSKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDTG 645
+ S S NTLSG+ AD ++W+ FK + + + P++S S D + L+VSVEDTG
Sbjct: 558 EAIAIPTSGSHNTLSGFEAADSRNNWENFKLLLSYEKNEMPYESDS-DKVTLVVSVEDTG 616
Query: 646 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 705
GIPL AQ R+FTPFMQ S SR +GGTGIGLSISK LV M G+I FVS P +GSTFT
Sbjct: 617 IGIPLHAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVEIMGGQINFVSRPLVGSTFT 676
Query: 706 FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 765
FTAV + +S+ + P + S F+G+ AL+VD RP+RA V++YH+QRLGI
Sbjct: 677 FTAVLRRCDKNAIS-DSKTVALHP--LPSSFKGLSALLVDKRPVRATVTKYHLQRLGITS 733
Query: 766 EVVSDQLQCLSQIAS---------GSKIINMILVEQEVW--EKDTSVSTLFVNNLRKLGC 814
EVV ++ G K M+L+E + W + D S+ +
Sbjct: 734 EVVGTIDPTFGVLSGRNGSSLTSIGKKQPCMLLIESDSWGPQMDVSLHARLQEMKQSDRI 793
Query: 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 874
K+FLL S++ ++ ++ SVI KPL++S LAA L +A+G+ + + +
Sbjct: 794 HVLPKVFLL----SAAESDKVKKIHAVDSVIPKPLKASALAACLFQALGITQPSHEKRDD 849
Query: 875 LPSM-------SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 927
S+ SL LLLG+ IL+VDDN VNL+VAA LK+YGA V CVE GK A LL
Sbjct: 850 SGSLHGRDGSGSLHGLLLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALSLLQ 909
Query: 928 PPHQFDACFMDIQMPEMDGYE 948
PH+FD C MDIQMPEMDG+E
Sbjct: 910 VPHKFDLCLMDIQMPEMDGFE 930
>gi|302768761|ref|XP_002967800.1| cytokinin receptor [Selaginella moellendorffii]
gi|300164538|gb|EFJ31147.1| cytokinin receptor [Selaginella moellendorffii]
Length = 965
Score = 872 bits (2252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/904 (51%), Positives = 608/904 (67%), Gaps = 65/904 (7%)
Query: 99 VSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPS 158
+++I ++ E+RRE L +MC ERA MLQDQFN SMNHV++++ L++TFH K PS
Sbjct: 29 AAVYINHSLTDSYIERRRETLANMCKERAWMLQDQFNSSMNHVRSLTALVTTFHLAKQPS 88
Query: 159 AIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKD 218
A+DQ R T+FERPL SGVAYA +V +R FE++ GW+IK M + + D
Sbjct: 89 ALDQ---ARQFFWTSFERPLMSGVAYAHKVEHWQRRAFEEEMGWSIKEMRSNAPRAQNLD 145
Query: 219 EPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRL 278
E YAP + +Q+T++H+ S+DM+SG+EDREN+LR+RASGKG LT+PFRLL+++ L
Sbjct: 146 E-------YAPTVLSQNTLAHLASVDMMSGEEDRENILRSRASGKGALTSPFRLLESDHL 198
Query: 279 GVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDI 338
GV+LTF VYK +LP +ATP +RI+AT GY+GG FD ESLVE LL QL+ QTI VNV D+
Sbjct: 199 GVVLTFTVYKTDLPDDATPAQRIQATAGYVGGAFDFESLVENLLRQLSESQTIIVNVNDV 258
Query: 339 TNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVI 398
TN S+P+ MYG N+ D V L FGDPFRKHEMRCRF ++A AI+T+ GI+VI
Sbjct: 259 TNKSNPLVMYGPNIPDGNEIEVCQLEFGDPFRKHEMRCRFNKEASVVWTAITTTFGIVVI 318
Query: 399 ASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGM 458
LV IF A NRIAKVEEDY M +LK +AE+ADVAKSQFLATVSHEIRTPMNGVLGM
Sbjct: 319 VLLVAQIFYAAGNRIAKVEEDYRKMEDLKVRAESADVAKSQFLATVSHEIRTPMNGVLGM 378
Query: 459 LDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 518
L MLMDTELD TQ+DY TA SGK L+ LINEVLDQAK+ESG++ELE V F LR ILDD
Sbjct: 379 LQMLMDTELDSTQRDYAHTALESGKQLIKLINEVLDQAKIESGRMELETVPFKLRTILDD 438
Query: 519 VLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVY 578
+L+LFS +++DKG+ELA Y+S+RVP+ ++GDP R QI+TNL+GNSIKFT++GHIFV+V+
Sbjct: 439 ILTLFSAENKDKGIELAAYVSERVPDVVLGDPVRLHQIVTNLVGNSIKFTDRGHIFVSVH 498
Query: 579 LVEEVVDSIEVETELSS--------------------SKNTLSGYPVADRCHSWKGFK-T 617
L E+V ++ + E S S +TLSG ADR ++W+ FK
Sbjct: 499 LEEDVKAAMSAQCEACSKQVTETQDHSDKLNTVDAAGSCSTLSGLEAADRRNNWETFKLI 558
Query: 618 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 677
Q+ S D + L+ SVEDTG GIP+ AQ R+F+PFMQ S SR +GGTGIG
Sbjct: 559 LKQEKSRLTTHKQPVDTVKLVFSVEDTGVGIPVHAQERVFSPFMQADSSTSRNYGGTGIG 618
Query: 678 LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG------SSTSNEHNSQQMNNQPNS 731
LSISK LV MKGEIGFVS +G+TF FT F G ++ S E + QQ ++
Sbjct: 619 LSISKCLVELMKGEIGFVSSLGVGTTFWFTVNFKVGDLEALEAAHSAECSKQQRAAHSST 678
Query: 732 -VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILV 790
++++ G+KALVVD RP+R++V+RYH++RLGIQV+V SD L+ SK ++MIL+
Sbjct: 679 PLTTQLSGLKALVVDGRPVRSEVTRYHLRRLGIQVDVASDVSSALAH--QRSKNLDMILI 736
Query: 791 EQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLR 850
+++ W T +S + + +++ G KL LLA +A + G S +VI KPLR
Sbjct: 737 DKDAWGSSTGLS--YPSKIKEAGPTLAPKLVLLAFDDDEHKAKAA--GFS-DNVIKKPLR 791
Query: 851 SSMLAASLQRAMGVGNKGNIRN-----------------WELPSMSLRHLLLGRKILIVD 893
+S +A L++A+G+ K R S +L LL G+ IL+VD
Sbjct: 792 ASYIANHLEKALGLDLKRRTRESSTPTSSSSDTSASINSGSGSSNNLHSLLTGKWILVVD 851
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEM---L 950
DN VN +VAA L++YGA V CVE G+ A E L PPH+FDACFMDIQMPEMDG+E +
Sbjct: 852 DNKVNRRVAAGALQKYGARVECVESGRLAIEKLEPPHKFDACFMDIQMPEMDGFEATRRI 911
Query: 951 PCFE 954
CFE
Sbjct: 912 RCFE 915
>gi|162458665|ref|NP_001105857.1| histidine kinase [Zea mays]
gi|89242031|dbj|BAE80686.1| histidine kinase [Zea mays]
Length = 975
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/884 (51%), Positives = 611/884 (69%), Gaps = 58/884 (6%)
Query: 100 SLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSA 159
S + W M ++ ++ E L SMC+ERARMLQ+QF V++NHV A++ILI+TF++ K+PSA
Sbjct: 31 SAVMHWTMRRESMDRAEERLVSMCEERARMLQEQFGVTVNHVHAIAILIATFNYDKSPSA 90
Query: 160 IDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDE 219
IDQ TF +YT RT+FERPL +GVAYA RV ERE FE QQGW + M + E
Sbjct: 91 IDQDTFAKYTARTSFERPLLNGVAYAQRVFHHEREMFESQQGWIMNTM---------QRE 141
Query: 220 PSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLG 279
P+P + EYAPVIF+QDTVS++ +DM+SG+EDREN+LRAR +GK VLT PFRLL +N LG
Sbjct: 142 PAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENILRARTTGKAVLTNPFRLLGSNHLG 201
Query: 280 VILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDIT 339
V+LTFAVY+ +LP++A+ +R+EAT GYLGG FD+ESLVE LL +LA Q I VNVYD+T
Sbjct: 202 VVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVT 261
Query: 340 NLSHPISMYGSNVSDDGLWL--VSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILV 397
N S + +YG + SD+ + VS L+FGDPFR+HEMRCR++QK P AI+ +G V
Sbjct: 262 NASEAMVLYGPSSSDERVPFLHVSMLDFGDPFRRHEMRCRYRQKLPMQWSAITNPLGTFV 321
Query: 398 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
I L+G+ A +R KV ED M ELK +AEAADVAKSQFLATVSHEIRTPMNGVLG
Sbjct: 322 IWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATVSHEIRTPMNGVLG 381
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
MLDML+ T+L +TQ+DY +TAQ G+AL++LIN+VLD+AK+E+GKLELEAV F+LR+++D
Sbjct: 382 MLDMLLGTDLTMTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMD 441
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
DV+SLFS KS++K +ELAV++ D VP+ ++GDP RFRQI+TNL+GN++KFTE+GH+FV V
Sbjct: 442 DVISLFSSKSREKCIELAVFVCDNVPKDVLGDPWRFRQILTNLVGNAVKFTERGHVFVRV 501
Query: 578 YLVE-------EVVDSI------EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD--- 621
L + +V++ V++ + + NTLSG+ ADR +SW+ FK D
Sbjct: 502 CLADNSNMEAGQVLNGAMNGKDGRVDSTTNGAFNTLSGFEAADRRNSWQYFKMLLSDKES 561
Query: 622 ------GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
G+ S S +D + L +S+EDTG GIPL+AQ R+FTPFMQ S SR +GGTG
Sbjct: 562 LLDDLEGTNS--DQSDSDHVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTG 619
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735
IGLSISK L M G+I FVS P +GSTFTF+ + +S+ ++ ++ +
Sbjct: 620 IGLSISKCLAELMGGQISFVSRPFVGSTFTFSTTLKRSYKDISVDSSRSLS---EALPTA 676
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA--SGSKI----INMIL 789
F+GMKA+++D RP+R+ V+RYH++RLGI V+ V++ + +G+ + ++
Sbjct: 677 FKGMKAILIDGRPVRSAVTRYHLKRLGITVQAVNNMSAVVKAFPGQNGATVSREKATILF 736
Query: 790 VEQEVWEKDTSVSTLFVNNL-----RKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
+E + W +T V L N+L R+L G + L + +S A+ G V
Sbjct: 737 IESDFWRPETDVQLL--NHLREHKNRQLSDGHKVVLLV------TSEADKDKYGSIFDIV 788
Query: 845 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAA 904
+ KP+R+SM+A+S+Q+ + V N PS LR LL+G+ IL+VDDN VNL+VAAA
Sbjct: 789 MCKPIRASMIASSIQQLLKVEMPERRDNQNRPSF-LRSLLVGKNILVVDDNKVNLRVAAA 847
Query: 905 GLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
LK+YGA V CVE GK A LL PPH FDACFMD+QMPEMDG+E
Sbjct: 848 ALKKYGANVSCVESGKDAISLLQPPHCFDACFMDVQMPEMDGFE 891
>gi|413923913|gb|AFW63845.1| putative histidine kinase family protein [Zea mays]
Length = 975
Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/884 (51%), Positives = 611/884 (69%), Gaps = 58/884 (6%)
Query: 100 SLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSA 159
S + W M ++ ++ E L SMC+ERARMLQ+QF V++NHV A++ILI+TF++ K+PSA
Sbjct: 31 SAVMHWTMRRESMDRAEERLVSMCEERARMLQEQFGVTVNHVHAIAILIATFNYDKSPSA 90
Query: 160 IDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDE 219
IDQ TF +YT RT+FERPL +GVAYA RV ERE FE QQGW + M + E
Sbjct: 91 IDQDTFAKYTARTSFERPLLNGVAYAQRVFHHEREMFESQQGWIMNTM---------QRE 141
Query: 220 PSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLG 279
P+P + EYAPVIF+QDTVS++ +DM+SG+EDREN+LRAR +GK VLT PFRLL +N LG
Sbjct: 142 PAPPQVEYAPVIFSQDTVSYLARIDMMSGEEDRENILRARTTGKAVLTNPFRLLGSNHLG 201
Query: 280 VILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDIT 339
V+LTFAVY+ +LP++A+ +R+EAT GYLGG FD+ESLVE LL +LA Q I VNVYD+T
Sbjct: 202 VVLTFAVYRPDLPADASVEQRVEATIGYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVT 261
Query: 340 NLSHPISMYGSNVSDDGLWL--VSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILV 397
N S + +YG + SD+ + VS L+FGDPFR+HEMRCR++QK P AI+ +G V
Sbjct: 262 NASEAMVLYGPSSSDERVPFLHVSMLDFGDPFRRHEMRCRYRQKLPMQWSAITNPLGTFV 321
Query: 398 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
I L+G+ A +R KV ED M ELK +AEAADVAKSQFLATVSHEIRTPMNGVLG
Sbjct: 322 IWMLLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKSQFLATVSHEIRTPMNGVLG 381
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
MLDML+ T+L +TQ+DY +TAQ G+AL++LIN+VLD+AK+E+GKLELEAV F+LR+++D
Sbjct: 382 MLDMLLGTDLTMTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKLELEAVPFDLRSLMD 441
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
DV+SLFS KS++K +ELAV++ D VP+ ++GDP RFRQI+TNL+GN++KFTE+GH+FV V
Sbjct: 442 DVISLFSSKSREKCIELAVFVCDNVPKDVLGDPWRFRQILTNLVGNAVKFTERGHVFVRV 501
Query: 578 YLVE-------EVVDSI------EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD--- 621
L + +V++ V++ + + NTLSG+ ADR +SW+ FK D
Sbjct: 502 CLADNSNMEAGQVLNGAMNGKDGRVDSTTNGAFNTLSGFEAADRRNSWQYFKMLLSDKES 561
Query: 622 ------GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
G+ S S +D + L +S+EDTG GIPL+AQ R+FTPFMQ S SR +GGTG
Sbjct: 562 LLDDLEGTNS--DQSDSDHVTLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTG 619
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735
IGLSISK L M G+I FVS P +GSTFTF+ + +S+ + ++ +
Sbjct: 620 IGLSISKCLAELMGGQISFVSRPFVGSTFTFSTTLKRSYKDISVDSSRSL---LEALPTA 676
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA--SGSKI----INMIL 789
F+GMKA+++D RP+R+ V+RYH++RLGI V+VV++ + +G+ + ++
Sbjct: 677 FKGMKAILIDGRPVRSAVTRYHLKRLGIIVQVVNNMSAVVKAFPGQNGATVSREKATILF 736
Query: 790 VEQEVWEKDTSVSTLFVNNL-----RKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
+E + W +T V L N+L R+L G + L + +S A+ G V
Sbjct: 737 IESDFWRPETDVQLL--NHLREHKNRQLSDGHKVVLLV------TSEADKDKYGSIFDIV 788
Query: 845 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAA 904
+ KP+R+SM+A+S+Q+ + V N PS LR LL+G+ IL+VDDN VNL+VAAA
Sbjct: 789 MCKPIRASMIASSIQQLLKVEMPERRNNHNRPSF-LRSLLVGKNILVVDDNKVNLRVAAA 847
Query: 905 GLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
LK+YGA V CVE GK A LL PPH FDACFMD+QMPEMDG+E
Sbjct: 848 ALKKYGANVSCVESGKDAISLLQPPHCFDACFMDVQMPEMDGFE 891
>gi|88714407|gb|ABD49495.1| cytokinin receptor 2 [Physcomitrella patens]
Length = 1082
Score = 863 bits (2229), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/992 (48%), Positives = 623/992 (62%), Gaps = 83/992 (8%)
Query: 57 WERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRR 116
W + +G SY I Y S R W K + W++F VSL +F M E+RR
Sbjct: 49 WWKDTGISY-IRPTYKDSEARSRYGHNWHTKAFVVWVVFMGAVSLSVFLAMRFDMLERRR 107
Query: 117 EALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFER 176
E L +MC+ RARML++QF SMNHV+A++ L++TFH GK PSAI+Q TF Y ERTAFER
Sbjct: 108 ENLANMCEGRARMLEEQFKASMNHVRALTALLTTFHLGKQPSAINQETFATYAERTAFER 167
Query: 177 PLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDT 236
PL SGVA+A RVL + R+ FE GWTIK M + KD +E YAP +Q +
Sbjct: 168 PLMSGVAFAERVLHANRKLFESAHGWTIKEMYS-------KDLQQDFDE-YAPTTMSQKS 219
Query: 237 VSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNAT 296
+S++ SLDM+SG+EDREN++RAR GKG LT PFRLL++ LGV+ TFAVY +L +A
Sbjct: 220 LSYLTSLDMMSGQEDRENIIRARELGKGALTKPFRLLESKHLGVVFTFAVYCTDLHDDAK 279
Query: 297 PNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYG-SNVSDD 355
+RI+AT GYLGG FD+E+LVE LL Q+A Q I VNVYDITN + P+ MYG +NV
Sbjct: 280 KEDRIKATAGYLGGAFDVETLVENLLRQMAGSQIIAVNVYDITNETMPLVMYGHTNVEKS 339
Query: 356 GLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAK 415
VS+L+FGDP R+HEMRCRFK+ A P AISTSIGI VIA LVGH+ A+ NRI K
Sbjct: 340 KNTYVSSLDFGDPARRHEMRCRFKEDALPPWTAISTSIGIFVIAFLVGHMLHASRNRIDK 399
Query: 416 VEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 475
VEE+ ELK +A+ A +AKSQFLATVSHEIRTPMNGVLGML+ML +T L+ Q DY
Sbjct: 400 VEENCRIFQELKMRADDAVIAKSQFLATVSHEIRTPMNGVLGMLNMLTNTRLNPAQLDYA 459
Query: 476 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 535
RTA ASGKAL++LINEVLDQAK+ESG++ELE V F+LRAILDDVLSLF G+S+D G+ELA
Sbjct: 460 RTALASGKALINLINEVLDQAKIESGRVELEHVPFDLRAILDDVLSLFHGQSRDSGIELA 519
Query: 536 VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV------------ 583
VY+S +VP+ L+GDPGRFRQIITNL+GNSIKFTE GHIFV V+L E+V
Sbjct: 520 VYVSAKVPKILVGDPGRFRQIITNLVGNSIKFTEAGHIFVCVHLNEDVNNLMDGDEGEAD 579
Query: 584 ------VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTF-----NQDGSTSPFKSSSA 632
V+S T+++ NTLSG AD +SW+ F+ + +
Sbjct: 580 DTLDGEVESAGPLTDMNYRFNTLSGRETADYRNSWEMFERLLAQEKSHRSGVDQDTRNYC 639
Query: 633 DL---INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMK 689
DL +NL++SVEDTG GIPL Q R+F PFMQ S SR +GGTGIGLSIS+ LV M
Sbjct: 640 DLNGAVNLVISVEDTGVGIPLHVQDRVFMPFMQADSSTSRNYGGTGIGLSISRSLVDLMS 699
Query: 690 GEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN---QPNSVSSEFQGMKALVVDP 746
GE+ FVS P +GSTFTFTA + EH ++ N Q +++ FQGM+ LVVD
Sbjct: 700 GEMEFVSHPKVGSTFTFTAELQRVPANVPEHILREGRNCYLQTPPLTTCFQGMRVLVVDG 759
Query: 747 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS-------GSK--------IINMILVE 791
R +R +V+R+H+QRLG++VEV + + + GS+ I +I V+
Sbjct: 760 RKVRCEVTRHHLQRLGLRVEVAHTPGEAAELLTTTVDRGNRGSRDSQRSFATDIELIFVD 819
Query: 792 QEVWEKDTSV------STLFVNNLRKLGCGFQS---------------------KLFLLA 824
++ W T V + F+ L G S K+ L+A
Sbjct: 820 KDAWGPGTWVNFRSLLTESFIGQLSHNQSGLTSYQYRSAAGRLPNGYPTLNSMKKMVLVA 879
Query: 825 NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS--MSLRH 882
S++ + + +V+ KPLR+S++AASL+ +GVG+ G + L SL++
Sbjct: 880 TSMNEMELSVVKASGFVDTVVRKPLRASLVAASLEEILGVGDGGRDQGQNLQGGINSLQN 939
Query: 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
LL G++IL+VDDN VN KVAA L +YGA V CV G+ A + L PPH +DACFMD+QMP
Sbjct: 940 LLTGKRILVVDDNPVNRKVAAGALNKYGAQVDCVNSGRAAIQSLKPPHNYDACFMDVQMP 999
Query: 943 EMDGYEMLPCFESFLLIAILVWKLNLKISWKR 974
EMDG+E A+ W+ S+ R
Sbjct: 1000 EMDGFEATRLIRKAEAAAVDNWQAGRFSSFGR 1031
>gi|297737593|emb|CBI26794.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/832 (55%), Positives = 567/832 (68%), Gaps = 89/832 (10%)
Query: 129 MLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRV 188
MLQDQF+VS+NHV A++IL+STFH+ KNPSAIDQ TF YT RTAFERPL SGVAYA RV
Sbjct: 1 MLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRV 60
Query: 189 LRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSG 248
SERE FEKQ GWTIK M K E SPI +EYAPVIF+Q+TVS++ SLDM+SG
Sbjct: 61 AYSERERFEKQHGWTIKTM---------KREASPIRDEYAPVIFSQETVSYIESLDMMSG 111
Query: 249 KEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYL 308
+EDREN+LRARA+GK VLT+PFRLL ++ LGV+LTF VYK +LP N T +RIEAT GYL
Sbjct: 112 EEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTVEQRIEATAGYL 171
Query: 309 GGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLNFG 366
GG FD+ESLVE LL QLA Q I VNVYD+TN S P+ MYG D + L+ S L+FG
Sbjct: 172 GGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGRQYQDVDMSLLHESKLDFG 231
Query: 367 DPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMEL 426
DPFRKH+M CR+ QK P +++T+ VI LVG+I I KVE+D+H M EL
Sbjct: 232 DPFRKHQMICRYHQKEPTSWTSLTTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQEL 291
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+DT+L TQ+DY +TAQA GKAL+
Sbjct: 292 KVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQACGKALI 351
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+LINEVLD+AK+E+GKLELEAV FNLR+ILDDVLSLFS KS+ KG+ELAV++SD+VPE +
Sbjct: 352 TLINEVLDRAKIEAGKLELEAVPFNLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPEMV 411
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDPGRFRQIITNL+GNS+KFTE+GHIFV V+L E ++ + E SS K
Sbjct: 412 IGDPGRFRQIITNLVGNSVKFTERGHIFVQVHLAEHTKALMDAKAETSSEK--------- 462
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ L+VSVEDTG GIPL AQ R+FTPFMQ S
Sbjct: 463 ----------------------------VTLMVSVEDTGIGIPLRAQGRVFTPFMQADSS 494
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
SR +GGTGIGLSISK LV M G+I F+S P IGSTF+FTA FG
Sbjct: 495 TSRNYGGTGIGLSISKCLVELMGGQIKFISRPQIGSTFSFTADFGR-------------- 540
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS------QIAS 780
D RP+RA V++YH++RLGI VEV + + ++ + S
Sbjct: 541 -----------------FDGRPVRAIVTKYHLKRLGILVEVANSIKKAVAITGKNGSLTS 583
Query: 781 GS-KIINMILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 837
GS +MILVE++ W E+D ++ ++ + K+ LLA +ISS+ + +
Sbjct: 584 GSGNQPDMILVEKDSWISEEDADLNLRLLDWKQNRHTLKLPKMILLATNISSAEFDKAKA 643
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI-RNWELPSMSLRHLLLGRKILIVDDNN 896
+VIMKPLR+SM+AA LQ+ +G+G K ++ S L+ LL G+KIL+VDDN
Sbjct: 644 AGFADTVIMKPLRASMVAACLQQVLGLGKKRQQGKDMLNGSAFLQSLLCGKKILVVDDNK 703
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VN +VAA LK++GA V C E GK A +LL PH FDACFMDIQMPEMDG+E
Sbjct: 704 VNRRVAAGALKKFGADVECAESGKAALQLLQLPHNFDACFMDIQMPEMDGFE 755
>gi|168046338|ref|XP_001775631.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens
subsp. patens]
gi|162673049|gb|EDQ59578.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens
subsp. patens]
Length = 1008
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/964 (49%), Positives = 620/964 (64%), Gaps = 66/964 (6%)
Query: 57 WERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRR 116
W + +G SY I Y S R W K + W++F VSL +F M E+RR
Sbjct: 14 WWKDTGISY-IRPTYKDSEARSRYGHNWHTKAFVVWVVFMGAVSLSVFLAMRFDMLERRR 72
Query: 117 EALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFER 176
E L +MC+ RARML++QF SMNHV+A++ L++TFH GK PSAI+Q TF Y ERTAFER
Sbjct: 73 ENLANMCEGRARMLEEQFKASMNHVRALTALLTTFHLGKQPSAINQETFATYAERTAFER 132
Query: 177 PLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDT 236
PL SGVA+A RVL + R+ FE GWTIK M + KD +E YAP +Q +
Sbjct: 133 PLMSGVAFAERVLHANRKLFESAHGWTIKEMYS-------KDLQQDFDE-YAPTTMSQKS 184
Query: 237 VSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNAT 296
+S++ SLDM+SG+EDREN++RAR GKG LT PFRLL++ LGV+ TFAVY +L +A
Sbjct: 185 LSYLTSLDMMSGQEDRENIIRARELGKGALTKPFRLLESKHLGVVFTFAVYCTDLHDDAK 244
Query: 297 PNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYG-SNVSDD 355
+RI+AT GYLGG FD+E+LVE LL Q+A Q I VNVYDITN + P+ MYG +NV
Sbjct: 245 KEDRIKATAGYLGGAFDVETLVENLLRQMAGSQIIAVNVYDITNETMPLVMYGHTNVEKS 304
Query: 356 GLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAK 415
VS+L+FGDP R+HEMRCRFK+ A P AISTSIGI VIA LVGH+ A+ NRI K
Sbjct: 305 KNTYVSSLDFGDPARRHEMRCRFKEDALPPWTAISTSIGIFVIAFLVGHMLHASRNRIDK 364
Query: 416 VEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 475
VEE+ ELK +A+ A +AKSQFLATVSHEIRTPMNGVLGML+ML +T L+ Q DY
Sbjct: 365 VEENCRIFQELKMRADDAVIAKSQFLATVSHEIRTPMNGVLGMLNMLTNTRLNPAQLDYA 424
Query: 476 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 535
RTA ASGKAL++LINEVLDQAK+ESG++ELE V F+LRAILDDVLSLF G+S+D G+ELA
Sbjct: 425 RTALASGKALINLINEVLDQAKIESGRVELEHVPFDLRAILDDVLSLFHGQSRDSGIELA 484
Query: 536 VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV------------ 583
VY+S +VP+ L+GDPGRFRQIITNL+GNSIKFTE GHIFV V+L E+V
Sbjct: 485 VYVSAKVPKILVGDPGRFRQIITNLVGNSIKFTEAGHIFVCVHLNEDVNNLMDGDEGEAD 544
Query: 584 ------VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTF-----NQDGSTSPFKSSSA 632
V+S T+++ NTLSG AD +SW+ F+ + +
Sbjct: 545 DTLDGEVESAGPLTDMNYRFNTLSGRETADYRNSWEMFERLLAQEKSHRSGVDQDTRNYC 604
Query: 633 DL---INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMK 689
DL +NL++SVEDTG GIPL Q R+F PFMQ S SR +GGTGIGLSIS+ LV M
Sbjct: 605 DLNGAVNLVISVEDTGVGIPLHVQDRVFMPFMQADSSTSRNYGGTGIGLSISRSLVDLMS 664
Query: 690 GEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN---QPNSVSSEFQGMKALVVDP 746
GE+ FVS P +GSTFTFTA + EH ++ N Q +++ FQGM+ LVVD
Sbjct: 665 GEMEFVSHPKVGSTFTFTAELQRVPANVPEHILREGRNCYLQTPPLTTCFQGMRVLVVDG 724
Query: 747 RPIRAKVSRYHIQRLGIQVE----------VVSDQLQCLSQIASGSKIINMILVEQEVWE 796
R +R +V+R+H+QRLG++V + +L ++ S I +I V+++ W
Sbjct: 725 RKVRCEVTRHHLQRLGLRVLPSVSCSSIFFSIFKELLIYCEVISD---IELIFVDKDAWG 781
Query: 797 KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS----IPSVIMKPLRSS 852
T V N R L +S + L+++ ++S V + +V+ KPLR+S
Sbjct: 782 PGTWV------NFRSLLT--ESFIGQLSHNQTTSMNEMELSVVKASGFVDTVVRKPLRAS 833
Query: 853 MLAASLQRAMGVGNKGNIRNWELPS--MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYG 910
++AASL+ +GVG+ G + L SL++LL G++IL+VDDN VN KVAA L +YG
Sbjct: 834 LVAASLEEILGVGDGGRDQGQNLQGGINSLQNLLTGKRILVVDDNPVNRKVAAGALNKYG 893
Query: 911 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWKLNLKI 970
A V CV G+ A + L PPH +DACFMD+QMPEMDG+E A+ W+
Sbjct: 894 AQVDCVNSGRAAIQSLKPPHNYDACFMDVQMPEMDGFEATRLIRKAEAAAVDNWQAGRFS 953
Query: 971 SWKR 974
S+ R
Sbjct: 954 SFGR 957
>gi|218193648|gb|EEC76075.1| hypothetical protein OsI_13298 [Oryza sativa Indica Group]
Length = 923
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/861 (53%), Positives = 591/861 (68%), Gaps = 62/861 (7%)
Query: 129 MLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRV 188
MLQDQF VS+NHV A++IL++TFH+ K+P A+DQ TF Y RT+FERPL SGVAYA RV
Sbjct: 1 MLQDQFAVSVNHVHALAILVATFHYDKHPPALDQDTFAVYAARTSFERPLLSGVAYAQRV 60
Query: 189 LRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSG 248
+ ++RE FE+QQGW IK M K EPSP ++EYAPVI++Q+T+S++ LD++SG
Sbjct: 61 VHADRESFERQQGWIIKTM---------KHEPSPAQDEYAPVIYSQETISYIEGLDVMSG 111
Query: 249 KEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYL 308
+EDREN+LRARA+GK VLT PFRL+ +N LGV+LTF VY +LP++ +R+ AT GYL
Sbjct: 112 EEDRENILRARATGKAVLTRPFRLM-SNHLGVVLTFPVYLVDLPNDTAVEDRVAATAGYL 170
Query: 309 GGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVS-----TL 363
GG FD+ESLVE LL QLA Q + VNVYD+TN S+P+ MYGS V L + S TL
Sbjct: 171 GGAFDVESLVENLLRQLAGNQELVVNVYDVTNHSNPLVMYGSEVP---LGIPSPSHTYTL 227
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGM 423
+FGDP RKH+M CR++ K AI+T G+ VI LVG+I A +R V+ED M
Sbjct: 228 DFGDPLRKHQMVCRYRNKLHVSWSAITTPSGVFVICMLVGYIIYAAWSRYDNVKEDCRKM 287
Query: 424 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGK 483
LKK+AEAAD+AKSQFLATVSHEIRTPMNGVLGMLDML+DTEL TQ+DY +TAQ GK
Sbjct: 288 EALKKRAEAADIAKSQFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQVCGK 347
Query: 484 ALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVP 543
AL+SLINEVLD+AK+E+GK++LE+V F+LR+ILDDV+SLFS KS++KG+ELAVY+S+RVP
Sbjct: 348 ALISLINEVLDRAKIEAGKIDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVP 407
Query: 544 ETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL-----------VEEVVDSIE---- 588
E L+GDPGRFRQIITNL+GNSIKFTE+GHIFV V+L +E VV+ +
Sbjct: 408 EILLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATEAKIEPVVNGMNGHKD 467
Query: 589 --VETELSSSKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDTG 645
+ S S NTLSG+ AD ++W+ FK + + + P++S S D + L+VSVEDTG
Sbjct: 468 EAIAIPTSGSHNTLSGFEAADSRNNWENFKLLLSYEKNEMPYESDS-DKVTLVVSVEDTG 526
Query: 646 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 705
GIPL AQ R+FTPFMQ S SR +GGTGIGLSISK LV M G+I FVS P +GSTFT
Sbjct: 527 IGIPLHAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVEIMGGQINFVSRPLVGSTFT 586
Query: 706 FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 765
FTAV + +S+ + P + S F+G+ AL+VD RP+RA V++YH+QRLGI
Sbjct: 587 FTAVLRRCDKNAIS-DSKTVALHP--LPSSFKGLSALLVDKRPVRATVTKYHLQRLGITS 643
Query: 766 EVVSDQLQCLSQIAS---------GSKIINMILVEQEVW--EKDTSVSTLFVNNLRKLGC 814
EVV ++ G K M+L+E + W + D S+ +
Sbjct: 644 EVVGTIDPTFGVLSGRNGSSLTSIGKKQPCMLLIESDSWGPQMDVSLHARLQEMKQSDRI 703
Query: 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 874
K+FLL S++ ++ ++ SVI KPL++S LAA L +A+G+ + + +
Sbjct: 704 HVLPKVFLL----SAAESDKVKKIHAVDSVIPKPLKASALAACLFQALGITQPSHEKRDD 759
Query: 875 LPSM-------SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 927
S+ SL LLLG+ IL+VDDN VNL+VAA LK+YGA V CVE GK A LL
Sbjct: 760 SGSLHGRDGSGSLHGLLLGKNILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALSLLQ 819
Query: 928 PPHQFDACFMDIQMPEMDGYE 948
PH+FD C MDIQMPEMDG+E
Sbjct: 820 VPHKFDLCLMDIQMPEMDGFE 840
>gi|168053506|ref|XP_001779177.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
patens]
gi|162669436|gb|EDQ56023.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens subsp.
patens]
Length = 1123
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/987 (49%), Positives = 604/987 (61%), Gaps = 106/987 (10%)
Query: 57 WERISGNSYYIHHLYYQSIGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRR 116
W SGN+Y + Y S R W KV + W++F VSL +++ M E+RR
Sbjct: 71 WWNDSGNTY-VRPTYNDSKAGPRYGHNWHTKVFVFWVVFMGAVSLSVYFAMRFDMLERRR 129
Query: 117 EALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFER 176
E L +MC+ RARML+DQF SMNHV+A++ L++TFH GK PSAI+Q TF Y RTAFER
Sbjct: 130 ENLANMCEGRARMLEDQFKASMNHVRALTALLTTFHLGKQPSAINQETFATYAARTAFER 189
Query: 177 PLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDT 236
PL SGVAYA RVL + R FE GWTIK M + E +EYAP +Q+T
Sbjct: 190 PLMSGVAYAERVLHANRAMFELTHGWTIKEMFSKERQQDF--------DEYAPTTMSQET 241
Query: 237 VSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNAT 296
V ++ SLDM+SG+EDREN++RAR SGKG LT PFRLL++ LGV+ TFAVY +LP +AT
Sbjct: 242 VFYLTSLDMMSGQEDRENIIRARESGKGALTNPFRLLESKHLGVVFTFAVYSTDLPFDAT 301
Query: 297 PNERIEATDG--------------------------------------YLGGIFDIESLV 318
+RI+AT G YLGG FD+E+LV
Sbjct: 302 KEDRIKATAGLQIGNRIILVQYMESSRTSCTITWKLCLNFLGIHDCRSYLGGAFDVETLV 361
Query: 319 EKLLHQLASKQTIFVNVYDITNLSHPISMYG-SNVSDDGLWLVSTLNFGDPFRKHEMRCR 377
E LL Q+A Q I VNVYDITN + P+ MYG +NV VS L+FGDP R HEMRCR
Sbjct: 362 ENLLRQMAGSQIIAVNVYDITNDTMPLVMYGHTNVERSDNTYVSLLDFGDPLRNHEMRCR 421
Query: 378 FKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAK 437
FK+ A P AISTSIGI VIA LVGH+ A+ NRI KVEE+ ELK +A+ A +AK
Sbjct: 422 FKEDALPPWTAISTSIGIFVIAFLVGHMLHASRNRIDKVEENCRIFQELKMRADDAVIAK 481
Query: 438 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497
SQFLATVSHEIRTPMNGVLGML MLMDT L+ TQ DY RTAQASGKAL++LINEVLDQAK
Sbjct: 482 SQFLATVSHEIRTPMNGVLGMLQMLMDTPLNSTQLDYARTAQASGKALITLINEVLDQAK 541
Query: 498 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 557
+ESG+LELE V F+LRAILDDVLSLF GKS+ G+ELAVY+S++VP+ LIGDPGRFRQII
Sbjct: 542 IESGRLELEHVPFDLRAILDDVLSLFHGKSRASGIELAVYVSEKVPKILIGDPGRFRQII 601
Query: 558 TNLMGNSIKFTEKGHIFVTVYLVEEV------------------VDSIEVETELSSSKNT 599
NL+GNSIKFTE GHIFV V+L E+V V+S E NT
Sbjct: 602 INLVGNSIKFTEAGHIFVCVHLNEDVNMVMGWDGGDADDTLDGEVESARPLIEKGHQFNT 661
Query: 600 LSGYPVADRCHSWKGF-------KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 652
LSG AD +SW+ F +++ G + S D++ L+VSVEDTG GIPL
Sbjct: 662 LSGRETADLRNSWEMFERLLTQEQSYRSAGDRETWNYDSNDVVELVVSVEDTGVGIPLHV 721
Query: 653 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712
Q R+FTPFMQ S SRT+GGTGIGLSIS+ LV M GE+ FVS P +GSTFTFTA F
Sbjct: 722 QDRVFTPFMQADSSTSRTYGGTGIGLSISRCLVELMSGEMDFVSSPGVGSTFTFTAEFQR 781
Query: 713 GSSTSNEHNSQQMNN---QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS 769
+ E ++ +N Q + + FQGM+ LVVD R + S L V V
Sbjct: 782 VPANVPESILREGSNCLLQTPPLPTCFQGMRVLVVDGRQVEVAHSVPEAAELLTTV-VNR 840
Query: 770 DQLQCLSQIASGSKIINMILVEQEVWEKDTSV------------STLFVNNLR------- 810
+ S S I MI V+++ W T + S +N R
Sbjct: 841 GSRGTRNSRGSISADIEMIFVDKDAWGPGTGMNFRSLLSECYMESPSSYHNARASYQYRL 900
Query: 811 ---KLGCGFQ----SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863
+L GFQ K+ L+A S++ + +VI KPLR+S++AA L++ +G
Sbjct: 901 TAGRLPIGFQVHSMQKMVLVATSMNGLELEMVKASGFVDTVIRKPLRASLVAACLKQILG 960
Query: 864 VGNKGNIRNWELPS--MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK 921
VG+ G EL SL++LL G++IL+VDDN VN KVAA L +YGA V CV G+
Sbjct: 961 VGD-GRDPGQELRGGVNSLQNLLSGKRILVVDDNPVNRKVAAGALNKYGAQVECVHSGRA 1019
Query: 922 ATELLMPPHQFDACFMDIQMPEMDGYE 948
A + L PPH FDACFMD+QMPEMDG++
Sbjct: 1020 AIQKLKPPHNFDACFMDVQMPEMDGFQ 1046
>gi|302810422|ref|XP_002986902.1| hypothetical protein SELMODRAFT_158365 [Selaginella moellendorffii]
gi|300145307|gb|EFJ11984.1| hypothetical protein SELMODRAFT_158365 [Selaginella moellendorffii]
Length = 905
Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/849 (52%), Positives = 582/849 (68%), Gaps = 25/849 (2%)
Query: 107 MSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFT 166
M++ + RE L +MCDERA MLQDQF SMNHV+A++ L+ TFH GK PS +DQ TF
Sbjct: 1 MNAGNIRRHRELLDNMCDERAWMLQDQFTASMNHVKALAALLRTFHLGKQPSVLDQETFA 60
Query: 167 RYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEE 226
YT+RT FERPL +GVAYA R+ SERE FE++ GW IK M T K SP + E
Sbjct: 61 VYTKRTEFERPLMTGVAYAQRLFHSEREAFERRYGWEIKTMTT-------KKVQSP-QAE 112
Query: 227 YAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAV 286
YAP +F Q+++S++ SLDMLSGK + +N+LRAR+SGKGVLT P RLL++N LG+++TF V
Sbjct: 113 YAPAVFTQNSLSYLESLDMLSGKANCDNILRARSSGKGVLTTPMRLLESNHLGIVVTFTV 172
Query: 287 YKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPIS 346
YK +LP +A+ ERI A+ GY+GG FD E LV LL QLA Q+I VNVYD+TN S P+
Sbjct: 173 YKEDLPEDASEEERIAASAGYVGGAFDFELLVTNLLKQLAGSQSIIVNVYDVTNESKPLL 232
Query: 347 MYGSNVSDDGLWL-VSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHI 405
MYG + +G + V+ L+F DP RKHE+RCRF P AI+TS+GILVI LVGHI
Sbjct: 233 MYGPDAYLEGRDVHVTELDFRDPARKHEIRCRFHNPLPISWSAITTSVGILVIVFLVGHI 292
Query: 406 FQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT 465
A +NRI KVEEDY M +LK AE+AD+AKSQFLATVSHEIRTPMNGVLGML MLMDT
Sbjct: 293 LHAAINRIQKVEEDYRRMEDLKVLAESADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 352
Query: 466 ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 525
+LD TQ+DY TA SGK L+ LINEVLDQAK+ESG++ELE V F+LR ILDD+L LFS
Sbjct: 353 DLDPTQRDYAGTAHESGKQLIKLINEVLDQAKIESGRMELEMVPFDLRTILDDILCLFSA 412
Query: 526 KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 585
+ +DKG+ELAV++S++VP+ L+GDP R QIITNL+GNS+KFTE+GHIFV V++ +E+
Sbjct: 413 EIKDKGIELAVFVSEKVPDVLVGDPARLHQIITNLVGNSVKFTERGHIFVCVHMEDELT- 471
Query: 586 SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 645
++ E S NTLSG AD SW FK+ G + ++ +VEDTG
Sbjct: 472 TVSKEEGFDSC-NTLSGMKAADPRLSWDSFKSLV--GGLEDRNCGELTDVRIVFNVEDTG 528
Query: 646 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 705
GIPL AQ R+FTPFMQ S SR +GGTGIGLSISK LV M+G + FVS P IG+TF
Sbjct: 529 VGIPLLAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMQGSMDFVSQPGIGATFR 588
Query: 706 FTAVFGNGSSTSNEHNSQQM---NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 762
F+ VF G E + ++Q ++ + M+ALVVD RP+R++++RYH+QRLG
Sbjct: 589 FSVVFKRGEMKMPEARYPHISPKHSQMARLTPCLKNMRALVVDGRPVRSQITRYHLQRLG 648
Query: 763 IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ-SKLF 821
+QVEVV+D LS A+ S+ ++M+LV+++ W + + + L+ G F+ +K
Sbjct: 649 MQVEVVNDIPAALSGGAN-SRSLDMVLVDKDSWGPGSGL--VVPQKLKDAGGRFKNAKFI 705
Query: 822 LLANS-ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL 880
LLA S I + T+ G + KP+R+S A L++ G G+K + E+ S
Sbjct: 706 LLAGSAIDNEPLKTAPSG--FIATHHKPVRASSFATFLEKVFGFGSK-RLNGREISQGSR 762
Query: 881 RH-LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939
H LL G++IL+VDDN VN +VAA L +YGA V CVE GK A L P H+FDACFMD+
Sbjct: 763 LHSLLSGKQILVVDDNKVNRRVAAGALTKYGARVECVESGKAAIARLQPSHEFDACFMDV 822
Query: 940 QMPEMDGYE 948
QMPEMDG+E
Sbjct: 823 QMPEMDGFE 831
>gi|302792032|ref|XP_002977782.1| WOL, cytokinin response 1 [Selaginella moellendorffii]
gi|300154485|gb|EFJ21120.1| WOL, cytokinin response 1 [Selaginella moellendorffii]
Length = 905
Score = 843 bits (2178), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/849 (52%), Positives = 582/849 (68%), Gaps = 25/849 (2%)
Query: 107 MSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFT 166
M++ + RE L +MCDERA MLQDQF SMNHV+A++ L+ TFH GK PS +DQ TF
Sbjct: 1 MNAGNIRRHRELLDNMCDERAWMLQDQFTASMNHVKALAALLRTFHLGKQPSVLDQETFA 60
Query: 167 RYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEE 226
YT+RT FERPL +GVAYA R+ SERE FE++ GW IK M T K SP + E
Sbjct: 61 VYTKRTEFERPLMTGVAYAQRLFHSEREAFERRYGWEIKTMTT-------KKVQSP-QAE 112
Query: 227 YAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAV 286
YAP +F Q+++S++ SLDMLSGK + +N+LRAR+SGKGVLT P RLL++N LG+++TF V
Sbjct: 113 YAPAVFTQNSLSYLESLDMLSGKANCDNILRARSSGKGVLTTPMRLLESNHLGIVVTFTV 172
Query: 287 YKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPIS 346
YK +LP +A+ ERI A+ GY+GG FD E LV LL QLA Q+I VNVYD+TN S P+
Sbjct: 173 YKEDLPEDASEEERIAASAGYVGGAFDFELLVTNLLKQLAGSQSIIVNVYDVTNESKPLL 232
Query: 347 MYGSNVSDDGLWL-VSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHI 405
MYG + +G + V+ L+F DP RKHE+RCRF P AI+TS+GILVI LVGHI
Sbjct: 233 MYGPDAYLEGRDVHVTELDFRDPARKHEIRCRFHNPLPISWSAITTSVGILVIVFLVGHI 292
Query: 406 FQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT 465
A +NRI KVEEDY M +LK AE+AD+AKSQFLATVSHEIRTPMNGVLGML MLMDT
Sbjct: 293 LHAAINRIQKVEEDYRRMEDLKVLAESADIAKSQFLATVSHEIRTPMNGVLGMLQMLMDT 352
Query: 466 ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 525
+LD TQ+DY TA SGK L+ LINEVLDQAK+ESG++ELE V F+LR ILDD+L LFS
Sbjct: 353 DLDPTQRDYAGTAHESGKQLIKLINEVLDQAKIESGRMELEMVPFDLRTILDDILCLFSA 412
Query: 526 KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 585
+ +DKG+ELAV++S++VP+ L+GDP R QIITNL+GNS+KFTE+GHIFV V++ +E+
Sbjct: 413 EIKDKGIELAVFVSEKVPDVLVGDPARLHQIITNLVGNSVKFTEQGHIFVCVHMEDELT- 471
Query: 586 SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 645
++ E S NTLSG AD SW FK+ G + ++ +VEDTG
Sbjct: 472 TVSKEEGFDSC-NTLSGVKAADLRLSWDSFKSLV--GGLEDRNCGELTDVRIVFNVEDTG 528
Query: 646 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 705
GIPL AQ R+FTPFMQ S SR +GGTGIGLSISK LV M+G + FVS P IG+TF
Sbjct: 529 VGIPLLAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMQGSMDFVSQPGIGATFR 588
Query: 706 FTAVFGNGSSTSNEHNSQQM---NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 762
F+ VF G E + ++Q ++ + M+ALVVD RP+R++++RYH+QRLG
Sbjct: 589 FSVVFKRGEMKMPEARYPHISPKHSQMARLTPCLKNMRALVVDGRPVRSQITRYHLQRLG 648
Query: 763 IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 822
+QVEVV+D LS A+ S+ ++M+LV+++ W + + + L+ G F++ F+
Sbjct: 649 MQVEVVNDIPSALSGGAN-SRSLDMVLVDKDSWGPGSGL--VVPQKLKDAGGRFKNAKFI 705
Query: 823 L--ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL 880
L ++I + T+ G + KP+R+S A L++ G G+K + E+ S
Sbjct: 706 LLAGSAIDNEPLKTAPSG--FIATHHKPVRASSFATFLEKVFGFGSK-RLNGREISQGSR 762
Query: 881 RH-LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939
H LL G++IL+VDDN VN +VAA L +YGA V CVE GK A L P H+FDACFMD+
Sbjct: 763 LHSLLSGKQILVVDDNKVNRRVAAGALTKYGARVECVESGKAAIARLQPSHEFDACFMDV 822
Query: 940 QMPEMDGYE 948
QMPEMDG+E
Sbjct: 823 QMPEMDGFE 831
>gi|302821913|ref|XP_002992617.1| hypothetical protein SELMODRAFT_430773 [Selaginella moellendorffii]
gi|300139581|gb|EFJ06319.1| hypothetical protein SELMODRAFT_430773 [Selaginella moellendorffii]
Length = 1096
Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/937 (48%), Positives = 596/937 (63%), Gaps = 112/937 (11%)
Query: 99 VSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPS 158
+++I ++ E+RRE L +MC ERA MLQDQFN SMNHV++++ L++TFH K PS
Sbjct: 141 AAVYINHSLTDSYIERRRETLANMCKERAWMLQDQFNSSMNHVRSLTALVTTFHLAKQPS 200
Query: 159 AIDQM---------------------------------TFTRYTERTAFERPLTSGVAYA 185
A+DQ TF YT RT+FERPL SGVAYA
Sbjct: 201 ALDQARQFFCFSLKNKASFRAFGVGTLAQLSWLVALQETFAAYTARTSFERPLMSGVAYA 260
Query: 186 VRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDM 245
V +R FE++ GW+IK M + + DE YAP + +Q+T++H+ S+DM
Sbjct: 261 HNVEHWQRRAFEEEMGWSIKEMRSNAPRAQNLDE-------YAPTVLSQNTLAHLASVDM 313
Query: 246 LSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATD 305
+SG+EDREN+LR+RASGKG LT+PFRLL+++ LGV+LTF VYK +LP +ATP +RI+AT
Sbjct: 314 MSGEEDRENILRSRASGKGALTSPFRLLESDHLGVVLTFTVYKTDLPDDATPAQRIQATA 373
Query: 306 GYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNF 365
G L+ QTI VNV D+TN S+P+ MYG N+ D V L F
Sbjct: 374 G-----------------SLSESQTIIVNVNDVTNKSNPLVMYGPNIPDGNEIEVCQLEF 416
Query: 366 GDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMME 425
GDPFRKHEMRCRF ++A AI+T+ GI+VI LV IF A NRIAKVEEDY M +
Sbjct: 417 GDPFRKHEMRCRFNKEASVVWTAITTTFGIVVIVLLVAQIFYAAGNRIAKVEEDYRKMED 476
Query: 426 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 485
LK +AE+ADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD TQ+DY TA SGK L
Sbjct: 477 LKVRAESADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDSTQRDYAHTALESGKQL 536
Query: 486 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 545
+ LINEVLDQAK+ESG++ELE V F LR ILDD+L+ FS +++DKG+ELA Y+S+RVP+
Sbjct: 537 IKLINEVLDQAKIESGRMELETVPFKLRTILDDILTPFSAENKDKGIELAAYVSERVPDV 596
Query: 546 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS---------- 595
++GDP R QI+TNL+GNSIKFT++GHIFV+V+L E+V ++ + E S
Sbjct: 597 VLGDPVRLHQIVTNLVGNSIKFTDRGHIFVSVHLEEDVKAAMSAQCEACSKQVTETQDHS 656
Query: 596 ----------SKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDT 644
S +TLSG ADR ++W+ FK Q+ S D + L+ SVEDT
Sbjct: 657 DKLNTVDAAGSCSTLSGLEAADRRNNWETFKLILKQEKSRLTTHKQPVDTVKLVFSVEDT 716
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GIP+ AQ R+F+PFMQ S SR +GGTGIGLSISK LV MKGEIGFVS +G+TF
Sbjct: 717 GVGIPVHAQERVFSPFMQADSSTSRNYGGTGIGLSISKCLVELMKGEIGFVSSLGVGTTF 776
Query: 705 TFTAVFGNG------SSTSNEHNSQQMNNQPNS-VSSEFQGMKALVVDPRPIRAKVSRYH 757
FT F G ++ S E + QQ ++ ++++ G+KALVVD RP+R++V+RYH
Sbjct: 777 WFTVNFKVGDLEALEAAHSAECSKQQRAAHSSTPLTTQLSGLKALVVDGRPVRSEVTRYH 836
Query: 758 IQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817
++RLGIQV+V SD L+ SK ++MIL++++ W T +S + + +++ G
Sbjct: 837 LRRLGIQVDVASDVSSALAH--QRSKNLDMILIDKDAWGSSTGLS--YPSKIKEAGPTLA 892
Query: 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRN----- 872
KL LLA +A + G S +VI KPLR+S +A L++A+G+ K R
Sbjct: 893 PKLVLLAFDDDEHKAKAA--GFS-DNVIKKPLRASHIANHLEKALGLDLKRRTRESSTPT 949
Query: 873 ------------WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGK 920
S +L LL G+ IL+VDDN VN +VAA L++YGA V CVE G+
Sbjct: 950 SSSSDTSASINSGSGSSNNLHSLLTGKWILVVDDNKVNRRVAAGALQKYGARVECVESGR 1009
Query: 921 KATELLMPPHQFDACFMDIQMPEMDGYEM---LPCFE 954
A E L PPH+FDACFMDIQMPEMDG+E + CFE
Sbjct: 1010 LAIEKLEPPHKFDACFMDIQMPEMDGFEATRRIRCFE 1046
>gi|38347753|dbj|BAD01586.1| histidine kinase 3 [Zea mays]
Length = 1049
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/855 (51%), Positives = 581/855 (67%), Gaps = 57/855 (6%)
Query: 131 QDQFNVSMNHVQAM---SILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVR 187
QD++ ++ +H A+ +L + N + TF +T RT FERPL SGVAYA++
Sbjct: 132 QDKYGLN-SHAPAVLEDKLLQNVIQEDINSTTQCNKTFEDFTARTTFERPLMSGVAYALK 190
Query: 188 VLRSEREEFEKQQGWTIKRMDTFEHNPVH-----KDEPSPIEEEYAPVIFAQDTVSHVIS 242
VL +ER++FE+Q GW IK+M+ + + VH K EPSP+++EYAPVIF+Q+TV H+IS
Sbjct: 191 VLHNERQQFEEQHGWKIKKMEDGDQSLVHDYNLEKLEPSPVQDEYAPVIFSQETVKHIIS 250
Query: 243 LDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIE 302
+DM+SGKED +N+LR+R++GKG LT+PF+LLK+N LGV+LTF VYK +LP NATP ERI
Sbjct: 251 VDMMSGKEDHDNILRSRSTGKGALTSPFKLLKSNHLGVVLTFTVYKYDLPPNATPQERIH 310
Query: 303 ATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVST 362
AT GYLG FD+ SLV+KLL QLASK+ I VN+YD TN + PI MYGS+ + G +S+
Sbjct: 311 ATLGYLGASFDVPSLVDKLLEQLASKRKIVVNLYDTTNHTSPIEMYGSDFTPSGDLHISS 370
Query: 363 LNFGDPFRKHEMRCRFKQKA--PWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDY 420
++FGDP RKHEM CRFK + PW + IST++ I+V+ LVGHI AT+N + K E DY
Sbjct: 371 IDFGDPTRKHEMHCRFKHEPSLPWSAIIISTAVAIIVL--LVGHIIYATLNSLEKAEHDY 428
Query: 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 480
M ELK +AEAADVAKSQFLATVSHEIRTPMNGVLGML MLMDTELD TQQD+V TAQ
Sbjct: 429 RVMRELKGQAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQQDFVVTAQE 488
Query: 481 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 540
SGK L++LINEVLD AK+ESG++ELEAV F++R ILD+V+SLF KSQ KG+ELAV +SD
Sbjct: 489 SGKVLINLINEVLDLAKIESGRIELEAVPFDVRDILDNVISLFYEKSQAKGIELAVLVSD 548
Query: 541 RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV-------------DSI 587
+VP+ LIGDP RFRQIITNL+GNS+KFTE+GHIFV V+LV+E+ I
Sbjct: 549 QVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFVQVHLVKELSRKGNNFCDVSAHNREI 608
Query: 588 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSA--DLINLIVSVEDTG 645
+++ S NTLSG VAD SW+ + F FK+S+ D I L V VEDTG
Sbjct: 609 LYDSDNSMLWNTLSGLEVAD---SWRSLENFTM------FKNSNGETDTIRLAVRVEDTG 659
Query: 646 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 705
GI +AQ RIFTPFMQ S SRT+GGTGIGLSI+K LV M GEIGF S +GSTF+
Sbjct: 660 IGITKDAQMRIFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSGVGSTFS 719
Query: 706 FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 765
FTA+F + ++ ++P + +FQGM+AL++D R RA+V+ YH++RLGIQ
Sbjct: 720 FTAIFKENRGCPGD--MKRYYSEPTPL--DFQGMRALIIDGRSARAEVTMYHLRRLGIQC 775
Query: 766 EVVSD------QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL--FVNNLRKLGCGFQ 817
+V+ + S +M+LV+ E W K + ++ FV+ K F
Sbjct: 776 SLVATSESESASSALMKACTSSKNNPDMVLVDTEAWGKGSGLAFYHRFVDCQLKGAHKFS 835
Query: 818 S---KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG-NKGNIRNW 873
K LL +SIS ++ I KPLR S + A L++ +GVG + R+
Sbjct: 836 QPMPKTILLGSSISPVESDY-LRLTGFGDCIRKPLRLSTIVACLRKTLGVGVTRQQSRDQ 894
Query: 874 ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 933
S+ L+ +L G++IL+VDDN VN KVAA LK+YG+ V CV+ G A ++L PPH FD
Sbjct: 895 ---SLVLQSVLTGKQILVVDDNAVNRKVAAGSLKKYGSTVTCVDSGSDAIDMLKPPHTFD 951
Query: 934 ACFMDIQMPEMDGYE 948
ACFMD+QMPEMDG+E
Sbjct: 952 ACFMDVQMPEMDGFE 966
>gi|413933250|gb|AFW67801.1| putative histidine kinase family protein [Zea mays]
Length = 966
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/849 (51%), Positives = 568/849 (66%), Gaps = 82/849 (9%)
Query: 162 QMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPS 221
Q TF YT RT+FERPL SGVAYA RV+ ++RE FE+ QGW IK M K EPS
Sbjct: 54 QNTFADYTARTSFERPLLSGVAYAQRVVHADREGFERHQGWIIKTM---------KHEPS 104
Query: 222 PIEEEYAPVIFAQDTVSHVISLDMLSG--------------------------------- 248
P ++EYAPV+++Q+TVS++ LDM+SG
Sbjct: 105 PAQDEYAPVVYSQETVSYIEGLDMMSGEVCGDVSRSFLADGLQLFSAGVGSEPGCVSVVL 164
Query: 249 KEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYL 308
+EDREN+LR+RASGK VLT PFRL+ +N LGV+LTF VY +LPS+A +R+ AT GYL
Sbjct: 165 QEDRENILRSRASGKAVLTRPFRLM-SNHLGVVLTFPVYHADLPSDAKEEDRVAATAGYL 223
Query: 309 GGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNV--SDDGLWLVSTLNFG 366
GG FD+ESLVE LL QLA Q + VNVYD+TN+S+P+ MYGS V + + L+FG
Sbjct: 224 GGAFDVESLVENLLRQLAGNQELVVNVYDVTNISNPLVMYGSEVPLGNPSPSHICMLDFG 283
Query: 367 DPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMEL 426
DPFRKH M CR++ K P AIST G+ VI LVG+I A +R V+ED M EL
Sbjct: 284 DPFRKHHMVCRYRNKPHVPWSAISTPSGVFVICMLVGYIAGAAWSRYDNVKEDCRKMEEL 343
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+DT+L TQ+D+ +TAQ GKAL+
Sbjct: 344 KKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALI 403
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
SLINEVLD+AK+E+ KL+LE+V F+LR+ILDDV+SLFS KS++KG+EL VY+S+RVPE L
Sbjct: 404 SLINEVLDRAKIEARKLDLESVPFDLRSILDDVISLFSSKSREKGIELDVYVSERVPEIL 463
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL-----------VEEVVDSIEVETE--- 592
+GDPGRFRQIITNL+GNSIKFTE+GHIFV V+L VE V + + T+
Sbjct: 464 LGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATESKVEPVANGMNGHTDEKT 523
Query: 593 ---LSSSKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 648
S S NTLSG+ AD +SW+ FK + + + P++S S D + L+VSVEDTG GI
Sbjct: 524 AVATSVSLNTLSGFEAADSRNSWENFKLLLSYEKNEMPYESVS-DKVTLVVSVEDTGIGI 582
Query: 649 PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708
PL+AQ+++FTPFMQ S SRT+GGTGIGLSISK LV M G+I FVS P++GSTFTFTA
Sbjct: 583 PLDAQAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTA 642
Query: 709 VFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
V S +S+ + P + S F+G+ AL+VD RP+RA V++YH+QRLGI +VV
Sbjct: 643 VLKR-CDRSAIGDSKPVMLHP--LPSSFKGLSALLVDRRPVRATVTKYHLQRLGIACDVV 699
Query: 769 SDQLQCLSQIA--SGSKIIN-----MILVEQEVW--EKDTSVSTLFVNNLRKLGCGFQSK 819
+ L ++ +GS + + M+L+E + W D S+ + + + K
Sbjct: 700 ATIELALGVLSGRNGSSLTSMKQPCMLLIESDSWGFNIDVSLRSRLLEMKQNGHTHVLPK 759
Query: 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS 879
+ LLA ++ + + ++ SVI KPL++S LAA L + +G+ N R+ S S
Sbjct: 760 IILLA----AAESGKLKEHYAVDSVITKPLKASALAACLFQTLGIKQSSNERSDN--SGS 813
Query: 880 LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939
L LLLG+ IL+VDDN VNL+VAA LK++GA V CVE GK A LL P++F C MDI
Sbjct: 814 LYGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALALLQVPYKFHLCLMDI 873
Query: 940 QMPEMDGYE 948
QMPEMDG+E
Sbjct: 874 QMPEMDGFE 882
>gi|413933249|gb|AFW67800.1| putative histidine kinase family protein [Zea mays]
Length = 806
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/733 (53%), Positives = 509/733 (69%), Gaps = 40/733 (5%)
Query: 245 MLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEAT 304
M+SG+EDREN+LR+RASGK VLT PFRL+ +N LGV+LTF VY +LPS+A +R+ AT
Sbjct: 1 MMSGEEDRENILRSRASGKAVLTRPFRLM-SNHLGVVLTFPVYHADLPSDAKEEDRVAAT 59
Query: 305 DGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNV--SDDGLWLVST 362
GYLGG FD+ESLVE LL QLA Q + VNVYD+TN+S+P+ MYGS V + +
Sbjct: 60 AGYLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNISNPLVMYGSEVPLGNPSPSHICM 119
Query: 363 LNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHG 422
L+FGDPFRKH M CR++ K P AIST G+ VI LVG+I A +R V+ED
Sbjct: 120 LDFGDPFRKHHMVCRYRNKPHVPWSAISTPSGVFVICMLVGYIAGAAWSRYDNVKEDCRK 179
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
M ELKK+AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+DT+L TQ+D+ +TAQ G
Sbjct: 180 MEELKKQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCG 239
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
KAL+SLINEVLD+AK+E+ KL+LE+V F+LR+ILDDV+SLFS KS++KG+EL VY+S+RV
Sbjct: 240 KALISLINEVLDRAKIEARKLDLESVPFDLRSILDDVISLFSSKSREKGIELDVYVSERV 299
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL-----------VEEVVDSIEVET 591
PE L+GDPGRFRQIITNL+GNSIKFTE+GHIFV V+L VE V + + T
Sbjct: 300 PEILLGDPGRFRQIITNLVGNSIKFTERGHIFVQVHLADHSNLATESKVEPVANGMNGHT 359
Query: 592 E------LSSSKNTLSGYPVADRCHSWKGFK-TFNQDGSTSPFKSSSADLINLIVSVEDT 644
+ S S NTLSG+ AD +SW+ FK + + + P++S S D + L+VSVEDT
Sbjct: 360 DEKTAVATSVSLNTLSGFEAADSRNSWENFKLLLSYEKNEMPYESVS-DKVTLVVSVEDT 418
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GIPL+AQ+++FTPFMQ S SRT+GGTGIGLSISK LV M G+I FVS P++GSTF
Sbjct: 419 GIGIPLDAQAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTF 478
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 764
TFTAV S +S+ + P + S F+G+ AL+VD RP+RA V++YH+QRLGI
Sbjct: 479 TFTAVLKR-CDRSAIGDSKPVMLHP--LPSSFKGLSALLVDRRPVRATVTKYHLQRLGIA 535
Query: 765 VEVVSDQLQCLSQIA--SGSKIIN-----MILVEQEVW--EKDTSVSTLFVNNLRKLGCG 815
+VV+ L ++ +GS + + M+L+E + W D S+ + + +
Sbjct: 536 CDVVATIELALGVLSGRNGSSLTSMKQPCMLLIESDSWGFNIDVSLRSRLLEMKQNGHTH 595
Query: 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 875
K+ LLA ++ + + ++ SVI KPL++S LAA L + +G+ N R+
Sbjct: 596 VLPKIILLA----AAESGKLKEHYAVDSVITKPLKASALAACLFQTLGIKQSSNERSDN- 650
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
S SL LLLG+ IL+VDDN VNL+VAA LK++GA V CVE GK A LL P++F C
Sbjct: 651 -SGSLYGLLLGKNILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALALLQVPYKFHLC 709
Query: 936 FMDIQMPEMDGYE 948
MDIQMPEMDG+E
Sbjct: 710 LMDIQMPEMDGFE 722
>gi|449518427|ref|XP_004166243.1| PREDICTED: histidine kinase 4-like, partial [Cucumis sativus]
Length = 756
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/675 (52%), Positives = 461/675 (68%), Gaps = 36/675 (5%)
Query: 307 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 364
YLGG FD+ESLVE LL QLA Q I VNVYD+TN S P+ MYG D + L S L+
Sbjct: 1 YLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNYSDPLVMYGHQYEDGDMSLSHESKLD 60
Query: 365 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 424
FGDPFRKH+M CR+ QKAP A++T+ VI LVG+I I KVE+D+H M
Sbjct: 61 FGDPFRKHQMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQ 120
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
ELK +AEAAD+AKSQFLATVSHEIRTPMNG+LGML +L+DTEL TQ+DY +TAQA GKA
Sbjct: 121 ELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKA 180
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L++LINEVLD+AK+E+GKLELEAV F+LR ILDDVLSLFS KS+ KGVELAV++SD+VPE
Sbjct: 181 LIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPE 240
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN------ 598
++GDPGRFRQ+ITNL+GNS+KFTE GHIFV V L E+ + S +++E + N
Sbjct: 241 IVMGDPGRFRQVITNLVGNSVKFTEHGHIFVKVQLAEQSMVSTNIKSETHVNGNSEDGAS 300
Query: 599 -------TLSGYPVADRCHSWKGFK-----TFNQDGSTSPFKSSS-ADLINLIVSVEDTG 645
TLSG+ AD +SW FK F +GS++ ++ +D++ +++SVEDTG
Sbjct: 301 HNKHQFETLSGFEAADNQNSWDTFKHLANEEFQPNGSSNLMATNEISDIVTVMISVEDTG 360
Query: 646 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 705
GIPL AQ R+F FMQ S SR +GGTGIGL ISK LV M G+I FVS P +GSTF+
Sbjct: 361 IGIPLSAQGRVFMRFMQADSSTSRNYGGTGIGLDISKCLVELMGGQINFVSKPQVGSTFS 420
Query: 706 FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 765
FTAVFG + N ++ N + + S F+G+KA+VVD +P+RA V++YH++RLGI V
Sbjct: 421 FTAVFGRCEKKATV-NIKKSNLE--ELPSAFRGLKAVVVDGKPVRAAVTKYHLKRLGILV 477
Query: 766 EVVSD-----QLQCLSQIASGSKII--NMILVEQEVW---EKDTSVSTLFVNNLRKLGCG 815
EV S L + S I+ ++IL+E++++ E+ S + L + ++ G
Sbjct: 478 EVASSVKMAAALWGKNGSVRSSNILQPDVILLEKDIFISNEECGSSNLLHQLDWKQNGHT 537
Query: 816 FQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI-RNW 873
+ KL LLA +S+ + + + ++IMKPLR+SM+ A LQ+ +G G K + ++
Sbjct: 538 LKLPKLILLATCMSTVEFDKAKEMGFSDTLIMKPLRASMIGACLQQVLGSGKKRQLGKDM 597
Query: 874 ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 933
S L+ LL G+KIL+VDDN VN +VAA LK++GA V CVE GK A LL PH FD
Sbjct: 598 ANGSNFLKGLLCGKKILVVDDNKVNRRVAAGALKKFGADVECVESGKAALALLQLPHSFD 657
Query: 934 ACFMDIQMPEMDGYE 948
ACFMDIQMPEMDG+E
Sbjct: 658 ACFMDIQMPEMDGFE 672
>gi|357521453|ref|XP_003631015.1| Histidine kinase [Medicago truncatula]
gi|355525037|gb|AET05491.1| Histidine kinase [Medicago truncatula]
Length = 760
Score = 617 bits (1590), Expect = e-173, Method: Compositional matrix adjust.
Identities = 352/679 (51%), Positives = 463/679 (68%), Gaps = 45/679 (6%)
Query: 307 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLV--STLN 364
Y+GG FD+ESLVE LL QLA Q I VNVYD+TN S P+ MYG+ + + LV S L+
Sbjct: 9 YVGGSFDVESLVENLLGQLAGHQAILVNVYDVTNSSDPLIMYGNQYEEGDVSLVHESKLD 68
Query: 365 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 424
FGDP+RKH+M CR+ QKAP A+ST+I VI L+G+I N I KVE+D+H M
Sbjct: 69 FGDPYRKHQMICRYHQKAPPNWTALSTAILFFVILLLIGYILYGAGNHIVKVEDDFHEMQ 128
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
ELK +AEAADVAKSQFLATVSHEIRTPMNG+LGML +L+ TEL+ TQ+DY +TAQA GKA
Sbjct: 129 ELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKA 188
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L++LINEVLD+AK+E+GKLELEAV F+LR+ILDDVLSLFS KS+ KG+ELAV++SD+VP+
Sbjct: 189 LIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPD 248
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE--EVVDSIEVET----------E 592
++GDPGRFRQI+TNL+GNS+KFTE+GHIFV V+L E + V + + ET
Sbjct: 249 IVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLSENRKPVTNGKHETYRNGGSEEVVH 308
Query: 593 LSSSKN--TLSGYPVADRCHSWKGF------KTFNQDGSTSPFKSSS-ADLINLIVSVED 643
S N TLSGY AD ++W F + F D ST S+ + + L+V VED
Sbjct: 309 ASGGYNLKTLSGYEAADERNNWDNFNHLIADEEFFCDASTKKVASNEFYEQVTLMVCVED 368
Query: 644 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 703
TG GIP AQ RIF PF+Q S SR +GGTGIGLSISK LV M G+I F+S P +GST
Sbjct: 369 TGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGST 428
Query: 704 FTFTAVFG----NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 759
F+FTA FG N + + N + + S F+G+KA+VVD +P+RA V+RYH++
Sbjct: 429 FSFTADFGIFKKNPITEVKKVNYEDL-------PSSFRGLKAVVVDGKPVRAAVTRYHLK 481
Query: 760 RLGIQVEVVSDQLQ----CLSQIASGSKII--NMILVEQEVWE-KDTSVSTLFVNNLRKL 812
RLGIQV+V + + C AS + + ++I VE++ W + + ++ + ++
Sbjct: 482 RLGIQVKVANAINKAVSLCGKNGASSTGLFQPDIIFVEKDSWVCGEDGIFSVRQLDWKQN 541
Query: 813 GCGFQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 871
G F+ ++ LLA +IS+ + + +VIMKPLR+SM+ A LQ+ +G G K +
Sbjct: 542 GHIFKMPQMILLATNISNDEFDKAKSAGFSDTVIMKPLRASMVGACLQQVLGTGKKRQL- 600
Query: 872 NWELP--SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 929
E+P S S+R LL G+KIL+VDDN VN +VAA LK +GA V C + GK A E+L P
Sbjct: 601 GKEMPNGSTSVRSLLFGKKILVVDDNVVNRRVAAGALKNFGADVKCADSGKAALEMLQFP 660
Query: 930 HQFDACFMDIQMPEMDGYE 948
H+FDACFMDIQMPEMDG+E
Sbjct: 661 HKFDACFMDIQMPEMDGFE 679
>gi|413951478|gb|AFW84127.1| putative histidine kinase family protein [Zea mays]
Length = 564
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 300/493 (60%), Positives = 378/493 (76%), Gaps = 14/493 (2%)
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
ML MLMDT+LD TQQDYVRTAQASGKALVSLINEVLDQAK+ESGKLELEAV F+LR + D
Sbjct: 1 MLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKIESGKLELEAVPFDLRTVCD 60
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
D+LSLF GK+Q+KG+ELAV++SD+VP+ LIGDPGR RQIITNL+GNSIKFTEKGHI++TV
Sbjct: 61 DILSLFCGKAQEKGLELAVFVSDQVPQALIGDPGRIRQIITNLVGNSIKFTEKGHIYLTV 120
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS--PFKSSSADLI 635
++VEE+++ +EVET + S NTLSGYPVA+R SW+ F+ F+++ ++S PF ++D I
Sbjct: 121 HVVEEIMNCLEVETG-TQSANTLSGYPVANRKRSWENFRVFSRELNSSEMPFAPIASDSI 179
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
+LI+SVEDTG GIP +AQSR+FTPFMQVGPSI+R HGGTGIGLSISK LVG M+GEIGF
Sbjct: 180 SLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGEIGFA 239
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSR 755
S P +GSTFTFTAV S+ NE+ SSEF+G+ ALVVD RP+RAKV+R
Sbjct: 240 SKPQVGSTFTFTAVLTRAHSSRNENK-----------SSEFKGINALVVDHRPVRAKVTR 288
Query: 756 YHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815
YH+QRLG+Q E+ +D Q +S+I GS+I ++L+++E W K++ L V LR
Sbjct: 289 YHLQRLGVQTELTTDLDQYISKINCGSQIAKLVLIDKETWLKESHSMPLLVTKLRNKDQP 348
Query: 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL 875
+KLFLL N S++++N+ +VIMKPLR+SML SL RA+G +K + RN L
Sbjct: 349 DSTKLFLLENPKSTAKSNSHIFREFNLNVIMKPLRASMLQVSLHRALGGIDKLHCRNGVL 408
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
+ +L LL ++IL+VDDN VNLKVAA LK+YGA V C + GKKA L PPH FDAC
Sbjct: 409 GNSTLGSLLHKKRILVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITQLKPPHSFDAC 468
Query: 936 FMDIQMPEMDGYE 948
FMDIQMPEMDG+E
Sbjct: 469 FMDIQMPEMDGFE 481
>gi|413938769|gb|AFW73320.1| putative histidine kinase family protein [Zea mays]
Length = 505
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 285/502 (56%), Positives = 376/502 (74%), Gaps = 16/502 (3%)
Query: 72 YQSIGSKRVRETWWRKVLIT-WLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARML 130
Y++ +KR WWR + W+L + S + W + + ++ E L SMC+ERARML
Sbjct: 5 YRAARTKR----WWRGLAAAGWVLTAVVCSAVMHWTLRRDSMDRAEERLVSMCEERARML 60
Query: 131 QDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLR 190
Q+QF V++NHV A++ILISTF+ K+P AIDQ TF +YT RT+FERPL +GVA+A RV
Sbjct: 61 QEQFGVTVNHVHAIAILISTFNFEKSPPAIDQDTFAKYTARTSFERPLLNGVAFAQRVFH 120
Query: 191 SEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKE 250
ERE FE QQGW + M + EP+P + EYAPVIF+QDTVS++ +DM+SG+E
Sbjct: 121 HEREMFESQQGWVMNTM---------QREPAPPQVEYAPVIFSQDTVSYLARIDMMSGEE 171
Query: 251 DRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGG 310
DREN+ RAR +GK VLT PFRLL +N LGV+LTFAVY+ +LP++A+ +R+EAT GYLGG
Sbjct: 172 DRENIFRARTTGKAVLTNPFRLLGSNHLGVVLTFAVYRPDLPADASVEQRVEATIGYLGG 231
Query: 311 IFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL--VSTLNFGDP 368
FD+ESLVE LL +LA Q I VNVYD+TN S + +YG + D+ + VS L+FGDP
Sbjct: 232 AFDVESLVENLLSKLAGNQDIVVNVYDVTNASDAMVLYGPSSLDEQVPFLHVSMLDFGDP 291
Query: 369 FRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKK 428
FRKHEMRCR++QK P P AI+ +G VI L+G+ A +R KV ED M ELK
Sbjct: 292 FRKHEMRCRYRQKLPMPWSAITNPLGTFVIWMLLGYSIAAAYSRYDKVTEDCRKMEELKT 351
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
+AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+ T+L +TQ+DY +TAQ G+AL++L
Sbjct: 352 QAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITL 411
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
IN+VLD+AK+E+GKLELEAV F+LR+++DDV+SLFS KS++K +ELAV++ D VP+ +IG
Sbjct: 412 INDVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIG 471
Query: 549 DPGRFRQIITNLMGNSIKFTEK 570
DP RFRQI+TNL+GN++K + +
Sbjct: 472 DPWRFRQILTNLVGNAVKVSSQ 493
>gi|27311849|gb|AAO00890.1| histidine kinase-like protein [Arabidopsis thaliana]
gi|30725488|gb|AAP37766.1| At5g35750 [Arabidopsis thaliana]
Length = 652
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 310/588 (52%), Positives = 401/588 (68%), Gaps = 29/588 (4%)
Query: 374 MRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAA 433
M CRFK K P P AI+ SI +LVI LVG+I +NRIA VEED M ELK +AEAA
Sbjct: 1 MHCRFKHKLPIPWTAITPSILVLVITFLVGYILYEAINRIATVEEDCQKMRELKARAEAA 60
Query: 434 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVL 493
D+AKSQFLATVSHEIRTPMNGVLGML MLMDT+LD Q DY +TA SGK L SLINEVL
Sbjct: 61 DIAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVL 120
Query: 494 DQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRF 553
DQAK+ESG+LELE V F++R ILD+V SL SGK+ +KG+ELAVY+S +VP+ ++GDP RF
Sbjct: 121 DQAKIESGRLELENVPFDMRFILDNVSSLLSGKANEKGIELAVYVSSQVPDVVVGDPSRF 180
Query: 554 RQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETEL---------SSSKNTLSGY 603
RQIITNL+GNSIKFT E+GHIF++V+L +EV + + +E + S S T+SG+
Sbjct: 181 RQIITNLVGNSIKFTQERGHIFISVHLADEVKEPLTIEDAVLKQRLALGCSESGETVSGF 240
Query: 604 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663
P + SWK FKT +S ++D I L+V+VEDTG GIP++AQ RIFTPFMQ
Sbjct: 241 PAVNAWGSWKNFKTCYST------ESQNSDQIKLLVTVEDTGVGIPVDAQGRIFTPFMQA 294
Query: 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ 723
S SRT+GGTGIGLSISK LV M+GE+GFVS P IGSTF+FT VFG + ++ +
Sbjct: 295 DSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTGVFGKAETNTSITKLE 354
Query: 724 QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 783
+ + EF G++ALV+D R IRA+V+RY ++RLGI ++VS + S +
Sbjct: 355 RF----DLAIQEFTGLRALVIDNRNIRAEVTRYELRRLGISADIVSSLRMACTCCISKLE 410
Query: 784 IINMILVEQEVWEKD--TSVSTLFVNNLRKLGCGFQSKLFLLANSIS-SSRANTSTDGVS 840
+ MIL++++ W K+ + + LF + K+ K+FLLA S + + R+ + G+
Sbjct: 411 NLAMILIDKDAWNKEEFSVLDELFTRS--KVTFTRVPKIFLLATSATLTERSEMKSTGL- 467
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
I V++KPLR S+L LQ + G K R +L HLL ++IL+VDDN VN +
Sbjct: 468 IDEVVIKPLRMSVLICCLQETLVNGKK---RQPNRQRRNLGHLLREKQILVVDDNLVNRR 524
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VA LK+YGA V CVE GK A +L PPH FDACFMD+QMPEMDG+E
Sbjct: 525 VAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDGFE 572
>gi|28916441|gb|AAO59549.1| histidine kinase [Oryza sativa Indica Group]
Length = 497
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/426 (56%), Positives = 312/426 (73%), Gaps = 14/426 (3%)
Query: 525 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 584
GK+Q+KG+ELAVY+SD+VP+ LIGDPGR RQIITNL+GNSIKFTE+GHI++TV++VEEV+
Sbjct: 1 GKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTERGHIYLTVHVVEEVM 60
Query: 585 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD--GSTSPFKSSSADLINLIVSVE 642
+EVET + ++ NTLSGYPVA+R SW+ + FN++ S F ++D I+L++SVE
Sbjct: 61 SCLEVETGIQNT-NTLSGYPVANRRRSWESIRLFNRELHSSEKSFAPIASDSISLVISVE 119
Query: 643 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 702
DTG GIP EAQSR+FTPFMQVGPSI+R HGGTGIGLSISK LVG MKGEIGF S P++GS
Sbjct: 120 DTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPHVGS 179
Query: 703 TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 762
TFTFTAV N+ S SEF+G+ ALVVD RP+RAKV++YH+QRLG
Sbjct: 180 TFTFTAVLMRAHCKGNDIKS-----------SEFKGINALVVDHRPVRAKVTKYHLQRLG 228
Query: 763 IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 822
++ E+ ++ Q +S++ SGS ++L+++E W K++ + L VN LR KLFL
Sbjct: 229 VKTELTAELNQFISKLNSGSLTAKLVLIDKETWLKESHCTPLLVNKLRNNDKPDSPKLFL 288
Query: 823 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH 882
L +S SS + + T +VIMKPLR+SML SL+RA+G +K + RN + + +L
Sbjct: 289 LGSSASSPKGGSDTSREHNLNVIMKPLRASMLQVSLRRALGGVDKVHCRNGVVGNSTLGS 348
Query: 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
LL ++I++VDDN VNLKVAA LK+YGA V C + GKKA LL PPH FDACFMDIQMP
Sbjct: 349 LLHKKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMP 408
Query: 943 EMDGYE 948
EMDG+E
Sbjct: 409 EMDGFE 414
>gi|297610356|ref|NP_001064436.2| Os10g0362300 [Oryza sativa Japonica Group]
gi|255679337|dbj|BAF26350.2| Os10g0362300 [Oryza sativa Japonica Group]
Length = 598
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 263/517 (50%), Positives = 344/517 (66%), Gaps = 41/517 (7%)
Query: 457 GMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAIL 516
GML MLMDTELD TQ+D+V TAQ SGK+L++LINEVLD AK+ESGK+ELEAV F++R IL
Sbjct: 12 GMLQMLMDTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDIL 71
Query: 517 DDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVT 576
D+V+SLFS KS KG+ELAV +SD+VP+ LIGDP RFRQIITNL+GNS+KFTE+GHIF+
Sbjct: 72 DNVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIR 131
Query: 577 VYLVEEVVDSIEVETELSSSK-------------NTLSGYPVADRCHSWKGFKTFNQDGS 623
V+L+EEV +E + S NTLSG VA+ + + F+ F
Sbjct: 132 VHLIEEVKRKMEALDDTSPENIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKD--- 188
Query: 624 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKY 683
S + D +NL+V+VEDTG GI +AQ+RIFTPFMQ S SRT+GGTGIGLSI+K
Sbjct: 189 ----SSDAIDSVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKR 244
Query: 684 LVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ-PNSVSSEFQGMKAL 742
LV M GEIGFVS P + STF+FTA+F N + + P +FQGM+AL
Sbjct: 245 LVELMGGEIGFVSKPGVSSTFSFTAIF-----KENRKDPGDIKRYCPEPTPPDFQGMRAL 299
Query: 743 VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI-----ASGSKIINMILVEQEVWEK 797
VVD R RA+V+ YH++RLGIQ ++ + LS + +S +NM+LV++E W +
Sbjct: 300 VVDGRCARAEVTMYHLRRLGIQCDLAATSESALSALLESCNSSVKSSLNMVLVDKEAWGE 359
Query: 798 DTSVSTL-FVNNLRKLGC--GFQS--KLFLLANSISSSRANT-STDGVSIPSVIMKPLRS 851
D+ ++ + +LR G +Q+ K FLLA SI+ + ++ G S + I KPLR
Sbjct: 360 DSGLAFFRCLIDLRLKGTLKSWQTMPKFFLLAGSITPADSDCLRLAGYS--NSIRKPLRL 417
Query: 852 SMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGA 911
S +AA L +A+GVG G R S+ LR +L G+ IL+VDDN VN VAA LK+YGA
Sbjct: 418 STVAACLSKALGVGLTG--RRSRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGA 475
Query: 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
V CV+ GK+A L PPH+FDACFMD+QMPEMDG+E
Sbjct: 476 IVTCVDSGKEAISRLQPPHKFDACFMDVQMPEMDGFE 512
>gi|28916434|gb|AAO59548.1| histidine kinase [Oryza sativa Indica Group]
Length = 488
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/417 (55%), Positives = 303/417 (72%), Gaps = 14/417 (3%)
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
LAVY+SD+VP+ LIGDPGR RQIITNL+GNSIKFTE+GHI++TV++VEEV+ +EVET +
Sbjct: 1 LAVYVSDQVPQILIGDPGRIRQIITNLVGNSIKFTERGHIYLTVHVVEEVMSCLEVETGI 60
Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQD--GSTSPFKSSSADLINLIVSVEDTGQGIPLE 651
++ NTLSGYPVA+R SW+ + FN++ S F ++D I+L++SVEDTG GIP E
Sbjct: 61 QNT-NTLSGYPVANRRRSWESIRLFNRELHSSEKSFAPIASDSISLVISVEDTGVGIPFE 119
Query: 652 AQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711
AQSR+FTPFMQVGPSI+R HGGTGIGLSISK LVG MKGEIGF S P++GSTFTFTAV
Sbjct: 120 AQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPHVGSTFTFTAVLM 179
Query: 712 NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 771
N+ S SEF+G+ ALVVD RP+RAKV++YH+QRLG++ E+ ++
Sbjct: 180 RAHCKGNDIKS-----------SEFKGINALVVDHRPVRAKVTKYHLQRLGVKTELTAEL 228
Query: 772 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
Q +S++ SGS ++L+++E W K++ + L VN LR KLFLL +S SS +
Sbjct: 229 NQFISKLNSGSLTAKLVLIDKETWLKESHCTPLLVNKLRNNDKPDSPKLFLLGSSASSPK 288
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILI 891
+ T +VIMKPLR+SML SL+RA+G +K + RN + + +L LL ++I++
Sbjct: 289 GGSDTSREHNLNVIMKPLRASMLQVSLRRALGGVDKVHCRNGVVGNSTLGSLLHKKQIIV 348
Query: 892 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VDDN VNLKVAA LK+YGA V C + GKKA LL PPH FDACFMDIQMPEMDG+E
Sbjct: 349 VDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMDGFE 405
>gi|63095199|gb|AAY32330.1| AHK1 [Phyllostachys praecox]
Length = 409
Score = 437 bits (1125), Expect = e-119, Method: Compositional matrix adjust.
Identities = 226/409 (55%), Positives = 290/409 (70%), Gaps = 22/409 (5%)
Query: 308 LGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWL--VSTLNF 365
LGG FD+ESLVE LL +LA Q I VNVYD+TN P+ MYG D + L VS L+
Sbjct: 1 LGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNALEPMVMYGPQSPDGKVLLLHVSMLDL 60
Query: 366 GDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMME 425
GDPFR+HEMRCR+ QK P P AI+ +G VI LVG+I A +R KV ED M E
Sbjct: 61 GDPFRRHEMRCRYWQKPPMPWSAITNPLGTFVIWMLVGYIICAAWSRYDKVSEDCRKMEE 120
Query: 426 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 485
LK +AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML+ T+L +TQ+D+ +TAQ G+AL
Sbjct: 121 LKTQAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLLGTDLTLTQKDHAQTAQMCGRAL 180
Query: 486 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 545
++LIN+VLD+AK+E+GKLELEAV F+LR+++DDV+SLFS KS++K +ELAV++ D VPE
Sbjct: 181 ITLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPEV 240
Query: 546 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-------EVVDSI------EVETE 592
+IGDP RFRQI+TNL+GN++KFTE+GH+FV V L E +V++ ++E+
Sbjct: 241 VIGDPWRFRQILTNLVGNAVKFTERGHVFVRVCLAENSNVEDDQVLNGTLNGKDGKIEST 300
Query: 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGST-------SPFKSSSADLINLIVSVEDTG 645
+ + NTLSG+ AD +SW+ FK D + + +D + L++S+EDTG
Sbjct: 301 ANGALNTLSGFQAADERNSWEYFKLLLSDKESLLDELEGEKSNQNDSDSVTLMISIEDTG 360
Query: 646 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 694
GIPL AQ R+FTPFMQ S SR +GGTGIGLSISK L M G+I F
Sbjct: 361 VGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 409
>gi|125536525|gb|EAY83013.1| hypothetical protein OsI_38233 [Oryza sativa Indica Group]
Length = 1019
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/357 (58%), Positives = 253/357 (70%), Gaps = 18/357 (5%)
Query: 88 VLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSIL 147
L+ W+ +L SLWI +M SQATE R L MCDERAR+LQDQ VSMNH+QA++IL
Sbjct: 2 ALLLWVFSCSLFSLWILSFMRSQATEARHGTLAVMCDERARILQDQVKVSMNHLQALAIL 61
Query: 148 ISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRM 207
+STFHH K+PSAIDQ TF RY ERTAFERPLTSG+AYA RV SERE FE+QQ W+I+ M
Sbjct: 62 VSTFHHSKSPSAIDQTTFARYMERTAFERPLTSGLAYAARVTHSERELFERQQAWSIRAM 121
Query: 208 DTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLT 267
+ P EEYAPVIFAQD HV+S+DMLSG EDR N+LRAR SGK VLT
Sbjct: 122 NF--------SSKRPRAEEYAPVIFAQDAYKHVVSIDMLSGAEDRGNLLRARESGKVVLT 173
Query: 268 APFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLAS 327
APF+LL R+GV+LT+AVYK ELP NAT ++RI+++ GYLGG+FDIE V+KLL +LA
Sbjct: 174 APFQLL-NKRIGVVLTYAVYKSELPLNATVHDRIQSSIGYLGGVFDIEGHVDKLLEKLAG 232
Query: 328 KQTIFVNVYDITNLSHPISMYG-SNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPL 386
K+ + VN+YD T S I MYG SN S G+ VSTL+FGDP RKHEM CRF Q PWP
Sbjct: 233 KEPMTVNIYDTTGESM-IRMYGSSNESASGMCHVSTLDFGDPLRKHEMHCRFTQGPPWPW 291
Query: 387 LAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLAT 443
LA+++S G LVI+ LVG+IF T IAKVE+ Y K + AK +F AT
Sbjct: 292 LAVASSYGTLVISLLVGYIFHFTDKWIAKVEDGY-------KATDMQMPAKDEFAAT 341
>gi|45861625|gb|AAS78641.1| putative cytokinin receptor [Oryza sativa]
gi|77555555|gb|ABA98351.1| CHASE domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|110331745|dbj|BAE97710.1| receptor-like serine/threonin kinase [Oryza sativa Japonica Group]
gi|125579248|gb|EAZ20394.1| hypothetical protein OsJ_36000 [Oryza sativa Japonica Group]
Length = 948
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/357 (58%), Positives = 253/357 (70%), Gaps = 18/357 (5%)
Query: 88 VLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSIL 147
L+ W+ +L SLWI +M SQATE R L MCDERAR+LQDQ VSMNH+QA++IL
Sbjct: 2 ALLLWVFSCSLFSLWILSFMRSQATEARHGTLAVMCDERARILQDQVKVSMNHLQALAIL 61
Query: 148 ISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRM 207
+STFHH K+PSAIDQ TF RY ERTAFERPLTSG+AYA RV SERE FE+QQ W+I+ M
Sbjct: 62 VSTFHHSKSPSAIDQTTFARYVERTAFERPLTSGLAYAARVTHSERELFERQQAWSIRAM 121
Query: 208 DTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLT 267
+ P EEYAPVIFAQD HV+S+DMLSG EDR N+LRAR SGK VLT
Sbjct: 122 NF--------SSKRPRAEEYAPVIFAQDAYKHVVSIDMLSGAEDRGNLLRARESGKVVLT 173
Query: 268 APFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLAS 327
APF+LL R+GV+LT+AVYK ELP NAT ++RI+++ GYLGG+FDIE V+KLL +LA
Sbjct: 174 APFQLL-NKRIGVVLTYAVYKSELPLNATVHDRIQSSIGYLGGVFDIEGHVDKLLEKLAG 232
Query: 328 KQTIFVNVYDITNLSHPISMYG-SNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPL 386
K+ + VN+YD T S I MYG SN S G+ VSTL+FGDP RKHEM CRF Q PWP
Sbjct: 233 KEPMTVNIYDTTGESM-IRMYGSSNESASGMCHVSTLDFGDPLRKHEMHCRFTQGPPWPW 291
Query: 387 LAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLAT 443
LA+++S G LVI+ LVG+IF T IAKVE+ Y K + AK +F AT
Sbjct: 292 LAVASSYGTLVISLLVGYIFHFTDKWIAKVEDGY-------KATDMQMPAKDEFAAT 341
>gi|115488474|ref|NP_001066724.1| Os12g0454800 [Oryza sativa Japonica Group]
gi|113649231|dbj|BAF29743.1| Os12g0454800, partial [Oryza sativa Japonica Group]
Length = 959
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/357 (58%), Positives = 253/357 (70%), Gaps = 18/357 (5%)
Query: 88 VLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSIL 147
L+ W+ +L SLWI +M SQATE R L MCDERAR+LQDQ VSMNH+QA++IL
Sbjct: 13 ALLLWVFSCSLFSLWILSFMRSQATEARHGTLAVMCDERARILQDQVKVSMNHLQALAIL 72
Query: 148 ISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRM 207
+STFHH K+PSAIDQ TF RY ERTAFERPLTSG+AYA RV SERE FE+QQ W+I+ M
Sbjct: 73 VSTFHHSKSPSAIDQTTFARYVERTAFERPLTSGLAYAARVTHSERELFERQQAWSIRAM 132
Query: 208 DTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLT 267
+ P EEYAPVIFAQD HV+S+DMLSG EDR N+LRAR SGK VLT
Sbjct: 133 NF--------SSKRPRAEEYAPVIFAQDAYKHVVSIDMLSGAEDRGNLLRARESGKVVLT 184
Query: 268 APFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLAS 327
APF+LL R+GV+LT+AVYK ELP NAT ++RI+++ GYLGG+FDIE V+KLL +LA
Sbjct: 185 APFQLL-NKRIGVVLTYAVYKSELPLNATVHDRIQSSIGYLGGVFDIEGHVDKLLEKLAG 243
Query: 328 KQTIFVNVYDITNLSHPISMYG-SNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPL 386
K+ + VN+YD T S I MYG SN S G+ VSTL+FGDP RKHEM CRF Q PWP
Sbjct: 244 KEPMTVNIYDTTGESM-IRMYGSSNESASGMCHVSTLDFGDPLRKHEMHCRFTQGPPWPW 302
Query: 387 LAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLAT 443
LA+++S G LVI+ LVG+IF T IAKVE+ Y K + AK +F AT
Sbjct: 303 LAVASSYGTLVISLLVGYIFHFTDKWIAKVEDGY-------KATDMQMPAKDEFAAT 352
>gi|222623641|gb|EEE57773.1| hypothetical protein OsJ_08314 [Oryza sativa Japonica Group]
Length = 891
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 206/392 (52%), Positives = 262/392 (66%), Gaps = 28/392 (7%)
Query: 75 IGSKRVRETWWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQF 134
+G R W W+L + ++ W++ + ++ E L SMC+ERARMLQ+QF
Sbjct: 1 MGKPEARSGWRNAAAAAWVLVAVACAAYMHWHLRRETMDRAEERLVSMCEERARMLQEQF 60
Query: 135 NVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSERE 194
V++NHV A++ILISTFH K PSAIDQ TF +YT RT+FERPL +GVAYA R+ ERE
Sbjct: 61 GVTVNHVHALAILISTFHFEKFPSAIDQDTFAKYTARTSFERPLLNGVAYAQRIFHHERE 120
Query: 195 EFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDREN 254
FE QQGW +K M K + +P ++EYAPVIF+QDTVS++ +DM+SG+EDREN
Sbjct: 121 MFENQQGWIMKTM---------KRQAAPPQDEYAPVIFSQDTVSYLARIDMMSGEEDREN 171
Query: 255 VLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDG-------- 306
+LRARA+GK VLT PFRLL +N LGV+LTFAVY+ L ++A+ ER+EAT G
Sbjct: 172 ILRARATGKAVLTNPFRLLGSNHLGVVLTFAVYRPGLAADASVEERVEATAGCLVVVVSS 231
Query: 307 -------YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDG--- 356
YLGG FD+ESLVE LL +LA Q I VNVYD+TN S P++MYG S DG
Sbjct: 232 NQIPTNRYLGGAFDVESLVENLLSKLAGNQDIVVNVYDVTNASEPMAMYGPQ-SPDGKVS 290
Query: 357 LWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKV 416
L+ VSTL+FGDPFR HEMRCR++QK P P AI+ +G VI LVG+I A +R KV
Sbjct: 291 LFHVSTLDFGDPFRAHEMRCRYRQKPPLPWSAITNPLGTFVIWMLVGYIICAAWSRYDKV 350
Query: 417 EEDYHGMMELKKKAEAADVAKSQFLATVSHEI 448
ED M ELK +AEAADVAKSQ V ++
Sbjct: 351 SEDCRKMEELKTQAEAADVAKSQLAVFVCDDV 382
Score = 349 bits (896), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 195/446 (43%), Positives = 273/446 (61%), Gaps = 40/446 (8%)
Query: 533 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-------EVVD 585
+LAV++ D VP+ +IGDP R+RQI+TNL+GN++KFTE+GH+FV V L E +V++
Sbjct: 373 QLAVFVCDDVPKVVIGDPWRYRQILTNLVGNAVKFTERGHVFVRVCLAENSKVEANQVLN 432
Query: 586 SI------EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS-------TSPFKSSSA 632
+VET + + NTLSG+ AD ++W FK D +
Sbjct: 433 GTMNGKDGKVETTANGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSYQNDC 492
Query: 633 DLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEI 692
D + L++S+EDTG GIPL AQ R+FTPFMQ S SR +GGTGIGLSISK L M G+I
Sbjct: 493 DCVTLMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQI 552
Query: 693 GFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAK 752
F S P +GSTFTF+AV ++ + + ++ ++ + F+GMKA++VD RP+R
Sbjct: 553 SFTSRPFVGSTFTFSAVLKRSCKDTSSDSKRSLSE---ALPTAFKGMKAILVDGRPVRGA 609
Query: 753 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI------INMILVEQEVWEKDTSVSTLFV 806
V+RYH+ RLGI V+VV++ L +A + + ++M+ +E ++W +T + L +
Sbjct: 610 VTRYHLNRLGIVVKVVNNLSMGLQTLAGQNGVKESREKLSMLFIESDIWRPETDI--LLL 667
Query: 807 NNLRKLGCGFQ----SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862
N L +L Q KL LL +S A+ G + V+ KP+R+S +A+ LQ+ +
Sbjct: 668 NRLHELKNNGQVHELPKLVLLV----TSEADKDRYGSAFDIVMYKPIRASTIASCLQQLL 723
Query: 863 GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA 922
V N PS LR LL+G+ ILIVDDN VNL+VAAA LK+YGA V CVE GK A
Sbjct: 724 KVVMPERKDNQNRPSF-LRSLLIGKNILIVDDNKVNLRVAAAALKKYGAKVHCVESGKDA 782
Query: 923 TELLMPPHQFDACFMDIQMPEMDGYE 948
LL PH FDACFMD+QMPEMDG+E
Sbjct: 783 VSLLQQPHCFDACFMDVQMPEMDGFE 808
>gi|194706202|gb|ACF87185.1| unknown [Zea mays]
Length = 438
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 196/364 (53%), Positives = 256/364 (70%), Gaps = 14/364 (3%)
Query: 587 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS--PFKSSSADLINLIVSVEDT 644
+EVET + NTLSGYPVA+R SW+ F+ F+++ ++S PF ++D I+L++SVEDT
Sbjct: 4 LEVETG-TQYTNTLSGYPVANRKRSWENFRLFSRELNSSEMPFAPIASDSISLMISVEDT 62
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GIP +AQSR+FTPFMQVGPSI+R HGGTGIGLSISK LVG MKGEIGF S P +GSTF
Sbjct: 63 GAGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFSSKPQVGSTF 122
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 764
TFTAV S+ NE+ SSEF+ + ALVVD RP+RAKV++YH+QRLG+Q
Sbjct: 123 TFTAVLTRVHSSRNENK-----------SSEFKEINALVVDHRPVRAKVTKYHLQRLGVQ 171
Query: 765 VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLA 824
E+ +D Q +S+ GS+I ++L+++E W K++ L V LR +KLFLL
Sbjct: 172 TELTTDLDQYISKNNCGSQIAKLVLIDKETWLKESHSMPLLVTKLRNKDQPDSTKLFLLE 231
Query: 825 NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL 884
N SS ++N+ +VIMKPLR+SML SLQRA+G +K + RN + + +L LL
Sbjct: 232 NPKSSVKSNSHIFREYNLNVIMKPLRASMLQVSLQRALGGIDKLHCRNGVVGNSTLGSLL 291
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
++I++VDDN VNLKVAA LK+YGA V C + GK+A LL PPH FDACFMDIQMPEM
Sbjct: 292 HKKRIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKEAITLLKPPHNFDACFMDIQMPEM 351
Query: 945 DGYE 948
DG+E
Sbjct: 352 DGFE 355
>gi|349587786|pdb|3T4J|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
gi|349587787|pdb|3T4J|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
gi|349587788|pdb|3T4K|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
gi|349587789|pdb|3T4K|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
gi|349587790|pdb|3T4L|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
gi|349587791|pdb|3T4L|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
gi|349587792|pdb|3T4O|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
gi|349587793|pdb|3T4O|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
gi|349587794|pdb|3T4Q|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
gi|349587795|pdb|3T4Q|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
gi|349587796|pdb|3T4S|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
gi|349587797|pdb|3T4S|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
gi|349587798|pdb|3T4T|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
gi|349587799|pdb|3T4T|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
Length = 270
Score = 357 bits (917), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 174/271 (64%), Positives = 208/271 (76%), Gaps = 10/271 (3%)
Query: 114 KRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTA 173
+R E L SMCD+RARMLQDQF+VS+NHV A++IL+STFH+ KNPSAIDQ TF YT RTA
Sbjct: 8 RREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFAEYTARTA 67
Query: 174 FERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFA 233
FERPL SGVAYA +V+ ERE FE+Q W IK MD + EPSP+ +EYAPVIF+
Sbjct: 68 FERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMD--------RGEPSPVRDEYAPVIFS 119
Query: 234 QDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPS 293
QD+VS++ SLDM+SG+EDREN+LRAR +GK VLT+PFRLL+T+ LGV+LTF VYK LP
Sbjct: 120 QDSVSYLESLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPE 179
Query: 294 NATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSN-- 351
N T ERI AT GYLGG FD+ESLVE LL QLA Q I V+VYDITN S P+ MYG+
Sbjct: 180 NPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDE 239
Query: 352 VSDDGLWLVSTLNFGDPFRKHEMRCRFKQKA 382
+D L S L+FGDPFRKH+M CR+ QKA
Sbjct: 240 EADRSLSHESKLDFGDPFRKHKMICRYHQKA 270
>gi|168061325|ref|XP_001782640.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
gi|162665873|gb|EDQ52543.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
Length = 1123
Score = 357 bits (917), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 297/951 (31%), Positives = 458/951 (48%), Gaps = 137/951 (14%)
Query: 96 WTLVSL-WIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHG 154
W L S+ + Y SS + R +L CD +L+ + ++N LI+ +
Sbjct: 123 WVLASIIGVVLYNSSLKSRNREFSLK--CDNHKEILRSEVENNLNASFVALGLIAGVPY- 179
Query: 155 KNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNP 214
++ + +T RT F RP + Y RVL S+R EFE++ TI + +
Sbjct: 180 -----VNDSIWKNFTRRTLFLRPNVRTLVYCERVLASQRSEFERKYNATI--VTILPNGT 232
Query: 215 VHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLK 274
K P+ +EYAPV+F + V + D S E +++AR +G L+ P
Sbjct: 233 RWKRGPA---DEYAPVVFQTEDVD-LYMYDAGSSPILDEALVKARDTGLFTLSPPSPRQS 288
Query: 275 TNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQ-LASKQTIFV 333
T ++G L + ++ S + R A GY+ + DI + +L + +A++ V
Sbjct: 289 TFQMGAYLAYYGPGKDSRSFLSAAARKSACVGYVATVLDIVEVFGAVLSRFIANEDMDVV 348
Query: 334 NVYDITNLSHPISMYGSNVS---------DDG-----------LWLVSTLNFGDPFRKHE 373
VY++ + P Y + + D W V + NF E
Sbjct: 349 AVYNVDPNTTPHVSYNCSTTLKPCVLPLFDPANRSKEHSDVFVAWEVGSQNF-------E 401
Query: 374 MRC---------RFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 424
+RC F+ WPLL + +I LV + R+ +E+D M
Sbjct: 402 LRCLPRSNMKLLAFRSVVAWPLLLAMVVLFCAIIVYLV-------LKRMLVIEKDVSLME 454
Query: 425 ELKKK-------AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRT 477
++ K AEAA+ AKS FLATVSHEIRTPMNGV+GM ++LM TEL+ Q++YV+
Sbjct: 455 KVNAKLTAATMAAEAAEKAKSSFLATVSHEIRTPMNGVIGMTNLLMGTELNAQQREYVKI 514
Query: 478 AQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVY 537
AQASGKAL++LIN+VLD +K+E+GK+E+E+V ++R D++ S K + +E+
Sbjct: 515 AQASGKALLALINDVLDLSKIEAGKMEVESVKLDIRNEFDEIFSFLDEKDSNNHLEMVAL 574
Query: 538 ISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV-VDSI----EVETE 592
I D VP L+GDP R RQI+ NL+ NS+KFT++G IF+ V +++ D + EV +
Sbjct: 575 IHDAVPSCLMGDPTRIRQILFNLVSNSMKFTKQGSIFICVRMLDSCHSDRLHPPPEVIYD 634
Query: 593 LSSSK-------NTLSGYPVADRCHSWKGFKTFNQD-----GST---------------- 624
LS SK N P + G ++D GST
Sbjct: 635 LSRSKLFFLGSVNNTQVVPKSPSGSDTTGMVGSDRDTICRGGSTRLSEMHLVAPRLSMVP 694
Query: 625 SPFKSSSA------------------DLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
P S A + + L++SVEDTG +PL +R+F PF+Q S
Sbjct: 695 GPLSSREAVAAWRRWEPKRSVETTESNPVTLVISVEDTGIDVPLHLHNRLFQPFLQADSS 754
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS---Q 723
SR +GGTG+GLSI K L MKG++ S P GS F T G ++S
Sbjct: 755 SSREYGGTGVGLSICKKLAMLMKGDLTVSSNPGEGSVFELTVTLGRAPQPKCSNSSGCCT 814
Query: 724 QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIAS 780
+ +P S + +G + ++VD P+R + +++RLG+ VE D L+ + + +
Sbjct: 815 TPDQRPPLESEKLRGFRVILVDTHPVRQEAYASYLRRLGVVVEETEDLDGTLELVRRKEN 874
Query: 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
S +I+V Q V + T+ + + G+++ L ++A + + T G S
Sbjct: 875 SSSAQAIIVVLQGVDRE----LTMEIGQRVRTEPGYET-LPIIALTCTPLPDELKTAGYS 929
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
S I KPLR + +A L +A+GV + + + P+ LL G+++L+VDDN VN +
Sbjct: 930 --STIFKPLRHATVATILLQALGVRFQMSTKKVA-PN---PKLLTGKRLLVVDDNMVNRR 983
Query: 901 VAAAGLKRYGAAVVCVERGKKATELL---MPPHQFDACFMDIQMPEMDGYE 948
VA + L RYGA VV V G +A + P +D MDIQMPEMDGYE
Sbjct: 984 VATSMLARYGATVVKVNGGMEAVNAVRNQKPDEAYDLVLMDIQMPEMDGYE 1034
>gi|168028033|ref|XP_001766533.1| CKI3b AtCKI1/2-like cytokinin receptor [Physcomitrella patens
subsp. patens]
gi|162682178|gb|EDQ68598.1| CKI3b AtCKI1/2-like cytokinin receptor [Physcomitrella patens
subsp. patens]
Length = 1098
Score = 357 bits (915), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 279/870 (32%), Positives = 437/870 (50%), Gaps = 107/870 (12%)
Query: 160 IDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWT--IKRMDTFEHNPVHK 217
+DQ T+ +TE+T F RP + Y +RVL +++ E + T I T N
Sbjct: 153 VDQDTWMAFTEQTVFLRPHVKSLVYCLRVLPQQKQAVEMKYNKTMYINVNKTIVTNYAKA 212
Query: 218 DEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNR 277
EEY PV +S + LD+ R ++ +AR SG L+AP+ + +
Sbjct: 213 -------EEYTPVFLQSANIS-MFMLDIFGYPIFRSSLTQARDSGNFSLSAPY-VNEGKE 263
Query: 278 LGVILTFAVYKRELPSNA--TPNERIEATDGYLGGIFDIESLVEKLLH-------QLASK 328
L + +F Y E+ + T R + GY+ + ++ ++ L
Sbjct: 264 LWRMGSFLPYYGEVDPDTLKTVEARRASCVGYVVTVLSVQERSYEVYPLGRFKDPDLDIS 323
Query: 329 QTIFVN-------VYDITNLSHP--ISMYGSNVSDDGLWLVSTLNFGDPFRKH----EMR 375
T VN Y+ + ++P + YG+++ GL V G PF E++
Sbjct: 324 ATAKVNPSLGLNAYYNCSVDANPCEVRFYGNHLKSKGLEAV-----GVPFSYGSLDIELQ 378
Query: 376 CRF---------KQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMEL 426
C + ++ WPLL ++ + V LV A + K E+ + +
Sbjct: 379 CWYNHNIRLHVLREMIAWPLLMLAMVVFCTVAVYLVLKKMSAAEIDVDKREKIHAQLRAA 438
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K KAEAAD AKS FLATVSHEIRTPMNGV+GM ++LM T+L Q +YV+ AQASG ALV
Sbjct: 439 KLKAEAADTAKSSFLATVSHEIRTPMNGVIGMTNLLMGTDLSPQQLEYVKIAQASGNALV 498
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+LI++VLD +K+E+G++E+E V F++R LD++LSLF K K +E++ + D VP+ L
Sbjct: 499 ALISDVLDLSKIEAGRMEIETVPFDIREELDNILSLFEDKVYQKKLEISALVHDTVPQWL 558
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV------------EEVVDSI------- 587
GDPGR RQ++ NL+GN+IKFT+ G+IF+ V LV E+ +D I
Sbjct: 559 YGDPGRLRQVLINLVGNAIKFTKHGNIFLCVRLVDPQFFATVSSSNEQFLDLIDTRHRHN 618
Query: 588 -EVETELSSSKNTLSGYPVADRCHSWKGF-------KTFNQDGSTS------------PF 627
E E+ S +L G +A R + ++ + + G S P
Sbjct: 619 PETESADGSHNTSLQGV-MAVRSNLFRARHPKMAPPRLSMKPGPLSTSACVAEWRNWKPS 677
Query: 628 KSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGR 687
S D + ++S+ED+G GIP QSR+F PF+Q S SR +GGTGIGLSI + LV
Sbjct: 678 GSLEFDEVACVISIEDSGIGIPKFMQSRLFEPFVQADSSTSREYGGTGIGLSICQKLVRL 737
Query: 688 MKGEIGFVSIPNIGSTFTFTAVF-GNGSSTSNEHNSQQMNNQPNSVSSE-FQGMKALVVD 745
+G+I S P GS F F+ V +G + M P+ + E +G++ L+VD
Sbjct: 738 TRGDITVESEPGEGSVFKFSLVLPTSGQRGDLRKLAFTMKRTPSDLEDERIRGIRVLLVD 797
Query: 746 PRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKIINMILVEQEVWEKDTSVS 802
P+R +V+ +++R+G +E D L+ L++ ++V+ + + T++
Sbjct: 798 ANPVRQEVAATYLRRVGALIEYAEDGSIALELLTR--DEGPPFQAVIVDLQGMDHMTAIQ 855
Query: 803 TLFVNNLRKLGCGFQSKLFLLANSI-SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 861
+++L +K+ +LA SI S + ++ KPLR + L + L +
Sbjct: 856 L-----VQRLKESVVNKIPVLALSIPPESELQSELQKAGYQHIVHKPLRCNALISGLLQT 910
Query: 862 MGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK 921
+G+ + N + +L G+++L+VDDN VN +VA++ L+R GA VV V G +
Sbjct: 911 LGI----EVTNPSRKQNANAEMLAGKRLLVVDDNMVNRRVASSILQRNGATVVTVNGGIQ 966
Query: 922 ATELLM---PPHQFDACFMDIQMPEMDGYE 948
A ++ QFD MDIQMPEMDGYE
Sbjct: 967 AINIVKKQDADKQFDMILMDIQMPEMDGYE 996
>gi|13129468|gb|AAK13126.1|AC083945_1 Histidine-kinase like protein [Oryza sativa Japonica Group]
Length = 627
Score = 355 bits (911), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 207/440 (47%), Positives = 277/440 (62%), Gaps = 41/440 (9%)
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
+AV +SD+VP+ LIGDP RFRQIITNL+GNS+KFTE+GHIF+ V+L+EEV +E +
Sbjct: 1 MAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDT 60
Query: 594 SSSK-------------NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 640
S NTLSG VA+ + + F+ F S + D +NL+V+
Sbjct: 61 SPENIEVTANSKNTMPYNTLSGLEVANNRKTLESFRMFKD-------SSDAIDSVNLLVT 113
Query: 641 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700
VEDTG GI +AQ+RIFTPFMQ S SRT+GGTGIGLSI+K LV M GEIGFVS P +
Sbjct: 114 VEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGV 173
Query: 701 GSTFTFTAVFGNGSSTSNEHNSQQMNNQ-PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 759
STF+FTA+F N + + P +FQGM+ALVVD R RA+V+ YH++
Sbjct: 174 SSTFSFTAIF-----KENRKDPGDIKRYCPEPTPPDFQGMRALVVDGRCARAEVTMYHLR 228
Query: 760 RLGIQVEVVSDQLQCLSQI-----ASGSKIINMILVEQEVWEKDTSVSTL-FVNNLRKLG 813
RLGIQ ++ + LS + +S +NM+LV++E W +D+ ++ + +LR G
Sbjct: 229 RLGIQCDLAATSESALSALLESCNSSVKSSLNMVLVDKEAWGEDSGLAFFRCLIDLRLKG 288
Query: 814 C--GFQS--KLFLLANSISSSRANT-STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG 868
+Q+ K FLLA SI+ + ++ G S + I KPLR S +AA L +A+GVG G
Sbjct: 289 TLKSWQTMPKFFLLAGSITPADSDCLRLAGYS--NSIRKPLRLSTVAACLSKALGVGLTG 346
Query: 869 NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 928
R S+ LR +L G+ IL+VDDN VN VAA LK+YGA V CV+ GK+A L P
Sbjct: 347 --RRSRDNSLVLRSVLTGKNILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQP 404
Query: 929 PHQFDACFMDIQMPEMDGYE 948
PH+FDACFMD+QMPEMDG+E
Sbjct: 405 PHKFDACFMDVQMPEMDGFE 424
>gi|168005127|ref|XP_001755262.1| CKI3a AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
patens]
gi|162693390|gb|EDQ79742.1| CKI3a AtCKI1/2-like cytokinin receptor [Physcomitrella patens subsp.
patens]
Length = 1218
Score = 353 bits (907), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 284/954 (29%), Positives = 459/954 (48%), Gaps = 121/954 (12%)
Query: 84 WWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQA 143
WW ++L L TLV + + + KR+E + C+ R + + + + N++ A
Sbjct: 162 WWMRILCI-LCACTLVIVVGVVVYKNGLSNKRQE-IQLKCENRKEVFKSEVD---NNLGA 216
Query: 144 MSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWT 203
+++ + +D T+ +T++T F RP +AY +RVL +R+ EK+ T
Sbjct: 217 SFVILGLVTSVPD---VDPQTWLAFTDQTLFLRPHVRSLAYCLRVLPEQRQAVEKKYNAT 273
Query: 204 IKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGK 263
M T+++ +P + EYAPVI VS + +D + ++++AR +G
Sbjct: 274 ---MYTYQNRIKLPRKP---DVEYAPVILESAGVSSYM-MDTFGYPILKSSIIQARDTGS 326
Query: 264 GVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATD--GYLGGIFDIESLVEKL 321
L+AP+ R+G +F + NE + GY+ + ++E + +
Sbjct: 327 FSLSAPYLQSGLWRMG---SFLPNYGDFDPLTLKNEAVRRARCVGYVATVLNVEEVFGSV 383
Query: 322 L--HQLASKQTI------------------------FVNVYDITNLSHP--ISMYGSNVS 353
+ H + + + Y+ + ++P + YG+
Sbjct: 384 VSSHFMTCSHEVHNLDRFRDADLYISAIAKVDSALDLNSYYNCSANTNPCEVRFYGNRTR 443
Query: 354 DDGLWLVST-LNFGDPF-----------RKHEMRCRFKQKAPWPLLAISTSIGILVIASL 401
+ VS +G + R H +R + WPLL ++ + V L
Sbjct: 444 SKSVEAVSVPFTYGTQYIVLECWYNYNIRLHVLR----EMIAWPLLMLAVVVFCTVAVYL 499
Query: 402 VGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDM 461
V A + E+ + + K KAEAAD AKS FLATVSHEIRTPMNGV+GM ++
Sbjct: 500 VLKRMSAAEKDAYQREKIHAQLRAAKVKAEAADTAKSSFLATVSHEIRTPMNGVIGMTNL 559
Query: 462 LMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLS 521
LM T+L Q +YV+ AQASG ALV+LI++VLD +K+E+G++E+E V F++R LD++LS
Sbjct: 560 LMGTDLTPQQLEYVKIAQASGNALVALISDVLDLSKIEAGRMEIETVPFDIREELDNILS 619
Query: 522 LFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 581
LF K K +E++ + D VP L GDPGR RQ++ NL+GN+IKFT++G IF+ V LV+
Sbjct: 620 LFEEKVHQKKLEISALVHDSVPRWLYGDPGRLRQVLINLVGNAIKFTKQGSIFLCVRLVD 679
Query: 582 ----------------EVVDS-----IEVETELSSSKNTLSGYPVADRCHSWKG------ 614
++VD+ E E + +L G +A R + ++
Sbjct: 680 PYFYETVSPPSSQQFLDLVDTRRRRIPEAELPDGNHDASLKGV-IAVRSNLFRPRHPHMA 738
Query: 615 ---FKTFNQDGSTS----------PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+ STS P D + ++S+ED+G GIP Q+R+F PF+
Sbjct: 739 PPRLSMKSGPSSTSACVAEWRNWKPIGGLDFDEVICVISIEDSGIGIPKFMQNRLFEPFV 798
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF-GNGSSTSNEH 720
Q S SR +GGTGIGLSI + LV G+I S P GS F F+ V +G +
Sbjct: 799 QADSSTSREYGGTGIGLSICQKLVRFTGGDIVVESEPGEGSVFKFSLVLPTSGQRGDLQK 858
Query: 721 NSQQMNNQPNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA 779
+ M P+ + E +G++ L+VD P+R +V+ +++R+G +E D L +
Sbjct: 859 LAFAMKRSPSGLGDERIRGIRVLLVDANPVRQEVAATYLRRVGALIEYADDVDTALELLT 918
Query: 780 -SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA-NTSTD 837
++V+ + + +S+ +++L +LA SI A T
Sbjct: 919 RENGPPFQAVIVDLQGMDHKSSIQL-----VQRLKVSTAKTFPVLALSIPPDIALQTELH 973
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
++ KPLR + L + L + +G+ + N + +L G+ +L+VDDN V
Sbjct: 974 EAGYQHIVHKPLRCTTLISGLLQTLGM----QVTNLSRKQNANAEMLTGKCLLVVDDNMV 1029
Query: 898 NLKVAAAGLKRYGAAVVCVERGKK---ATELLMPPHQFDACFMDIQMPEMDGYE 948
N VA++ L+RYGA VV V G + A + QFD MDIQMPEMDGYE
Sbjct: 1030 NSTVASSMLQRYGATVVTVNGGNQAIIAVKQQESDKQFDMILMDIQMPEMDGYE 1083
>gi|168047701|ref|XP_001776308.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
gi|162672403|gb|EDQ58941.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
Length = 1148
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 291/940 (30%), Positives = 446/940 (47%), Gaps = 109/940 (11%)
Query: 116 REALGSM-------CDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRY 168
++AL SM C R +L+ + ++N A+ L ++ P+ +++ T Y
Sbjct: 108 KDALRSMEQEFRLKCVNRKEVLKSEVENNLNASFAIVGLTASL-----PNLNNEIWMT-Y 161
Query: 169 TERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYA 228
RT F RP + + Y RV+ SER FE++ W + N V + + + EY+
Sbjct: 162 ARRTLFLRPYVTRLLYVERVIASERAAFERK--WNSSILYVTPQNTVIRRPDN--DTEYS 217
Query: 229 PVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTN-RLGVILTFAVY 287
P++F + H + +D + R + AR +G L+ K + ++G L +
Sbjct: 218 PIVFETED-EHYLFVDSGAYPRYRSAIDAARDTGLFTLSPVTPRAKNSWQMGAYLAYYGR 276
Query: 288 KRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITN-LSHPIS 346
R+L + ++ ER +A GY+G + ++ L ++L Q + V + N +S S
Sbjct: 277 GRDLTNFSSVAERRQACKGYVGTVMNVTELFHRVLFQFTDDVDMDVVAVFVVNPMSGLYS 336
Query: 347 MYGSNVSDDGLWLVSTLNFGDPFRK-HEM----------------RCRFKQK-------- 381
Y + S +V DP R+ HE+ RC KQ
Sbjct: 337 YYNCSASASDCTVV----LFDPARRAHEVSKAVALWDYGTQSFSVRCFPKQNLTLLALRA 392
Query: 382 -APWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQF 440
WPLL I +I LV QA +A +E+ + K AEAAD AKS F
Sbjct: 393 IIAWPLLMSLVVIFCFIIVCLVLKRMQAIEKDVAVMEKMDEDLKVAKVAAEAADKAKSNF 452
Query: 441 LATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500
LATVSHEIRTPMNGV+GM ++LM T+L Q +YV+ AQASG AL++LIN+VLD +K+E+
Sbjct: 453 LATVSHEIRTPMNGVIGMTNLLMGTDLTDQQLEYVKIAQASGNALIALINDVLDLSKIEA 512
Query: 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNL 560
G++ELEAV FN+R +D V LF Q K +E+++ + + VP +IGDPGRFRQI+ NL
Sbjct: 513 GRMELEAVPFNIRKEVDCVFHLFDETVQQKKLEMSMLVHNTVPTCVIGDPGRFRQILGNL 572
Query: 561 MGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNT--------------------- 599
+GN++KFT++G I V V +++ S T ++ +N+
Sbjct: 573 IGNALKFTKEGSILVCVRVMDPNQGSSSDFTAINVDQNSPDTHSSQGLITETLSEVELEG 632
Query: 600 --LSGYPVADRCHSWKGFKTFNQDG---------STSPFKSSSADLINLIVSVEDTGQGI 648
L G A R G + +++ TS +I SVEDTG GI
Sbjct: 633 LRLRGGSTAPRLSIQPGTEFNSREAVESWRKWNLKTSALNCKPPSHFTIIASVEDTGIGI 692
Query: 649 PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-- 706
P + R+F PF Q S SR HGGTGIGLSI + LV M GEI S +GS F F
Sbjct: 693 PQHLEKRLFQPFSQANSSTSREHGGTGIGLSICEKLVKLMNGEITVTSNVGVGSVFEFFL 752
Query: 707 -----TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL 761
A+ G + ++++ GM ++VD +R +V+ ++Q L
Sbjct: 753 PVKFHDALEGKPCCSKFPAGDKRLS-----------GMHVVLVDNNLVRQEVTANYLQCL 801
Query: 762 GIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLF 821
I V++V D L + + ILV+ E S++ L + +R + F++
Sbjct: 802 DIYVDLVEDMESTLELLRIKGTSLQAILVDLEGLSL-ASIADL-TSTVRNMP-SFKALPV 858
Query: 822 LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR 881
L + + ++ KPLR S LA L AM + + +
Sbjct: 859 LGLSLALPPLIEKELRDAGVSYMVKKPLRHSSLACVLLEAMNLTPTPATK--RAVKVDDS 916
Query: 882 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL---MPPHQFDACFMD 938
LL ++IL+VDDN VN +VA + LK+YGA V V G +A + + + D MD
Sbjct: 917 KLLSDKRILVVDDNMVNRRVATSMLKKYGAIVSSVNGGAEAVDAVKNRKEDEKLDLIVMD 976
Query: 939 IQMPEMDGYEMLPCFESFLLIAILVWKLNLKISWKRSYKL 978
IQMPEMDG+E ++ + + + ISW R ++L
Sbjct: 977 IQMPEMDGWEATRRIRNWEVENCFICRTK-NISWCRHHRL 1015
>gi|225429946|ref|XP_002281288.1| PREDICTED: histidine kinase 3-like [Vitis vinifera]
Length = 337
Score = 325 bits (834), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 161/249 (64%), Positives = 189/249 (75%)
Query: 700 IGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 759
I + T VF G S SNE+ Q NNQ N+VSSEFQGM ALVVDP P+RAKVSR+HIQ
Sbjct: 4 IANPSKVTTVFSGGCSISNEYKCQPTNNQSNAVSSEFQGMAALVVDPNPVRAKVSRHHIQ 63
Query: 760 RLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819
RLGI VEV SD Q S I+SG+ IN +LVE +VW+KD+++S LFVN L+KL K
Sbjct: 64 RLGIHVEVTSDLNQVFSGISSGNTAINRVLVEHDVWDKDSNLSALFVNKLKKLDLEVPPK 123
Query: 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS 879
LFLLANSISS+R + + GV +VIMKPLR+ MLAASLQRA+GVGNKG +N E PS+S
Sbjct: 124 LFLLANSISSTRNSAAISGVYNSTVIMKPLRAGMLAASLQRALGVGNKGVCQNGEHPSLS 183
Query: 880 LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939
LR LL GRKIL+VDDNNVNL+VAA LK+YGA +VC + GK A LL PPH FDACFMDI
Sbjct: 184 LRSLLRGRKILVVDDNNVNLRVAAGALKKYGADMVCADSGKSAIPLLKPPHDFDACFMDI 243
Query: 940 QMPEMDGYE 948
QMPEMDG+E
Sbjct: 244 QMPEMDGFE 252
>gi|168024653|ref|XP_001764850.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683886|gb|EDQ70292.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1114
Score = 322 bits (824), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 279/874 (31%), Positives = 425/874 (48%), Gaps = 108/874 (12%)
Query: 160 IDQMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDE 219
+D + ++T +T F RP + Y RVL +R FEK+ TI + N VH
Sbjct: 163 LDDTVWRKFTHQTLFLRPNVKRLLYMERVLNKDRAAFEKKWNGTIGYL---VGNVVH--- 216
Query: 220 PSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLG 279
P + EY+P+I + + H + +D + AR +G L + ++G
Sbjct: 217 PRGNDSEYSPIIHEKSDLQHAL-VDPAHYPVFASAIHAARDTGLFTLWLATGDPSSWQMG 275
Query: 280 VILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQ--------------L 325
L + +E S AT ER A GY+G + ++ + +LL + +
Sbjct: 276 AYLAYYGPGKEGSSFATIEERRAACLGYVGTVLNVSEIFARLLSRFIDDVDMDVVFVYLV 335
Query: 326 ASKQTIFVNVYDITNLSHP--ISMYG-SNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKA 382
+ T+F Y+ +N + P +++Y + S DG V+++N+ ++RC K +
Sbjct: 336 DPQATLF---YNCSNTAVPCVVALYDPARRSRDGK-PVASVNWDYGTLMFQLRCLPKHNS 391
Query: 383 ---------PWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAA 433
WPLL + +I LV QA ++ +E+ + K AEAA
Sbjct: 392 KLIALRNIIAWPLLMSVVVLFFSIIVFLVLRRMQAIEKDVSIIEKMNVDLKAAKVAAEAA 451
Query: 434 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVL 493
D AKS FLATVSHEIRTPMNGV+GM ++LM T+L Q DYV+ AQ+SG AL++LIN+VL
Sbjct: 452 DKAKSSFLATVSHEIRTPMNGVIGMTNLLMGTDLSSQQLDYVKVAQSSGNALIALINDVL 511
Query: 494 DQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRF 553
D +K+E+GK+ELE+VSFNLR +D V +LF K Q K +E+ + + + VP + GDPGRF
Sbjct: 512 DLSKIEAGKMELESVSFNLRKEVDSVFTLFDEKLQQKKLEVFMLVHEAVPTCVTGDPGRF 571
Query: 554 RQIITNLMGNSIKFTEKGHIFVTV-------------YLVEEVVDSIEVETELSSSKNTL 600
RQI+ NL+ N++KFT++G I V+V Y + V ++ + S S
Sbjct: 572 RQILVNLVSNALKFTKEGSILVSVRVMDPHSEADDQDYPSSDSVYILDPAQKASGSIQMS 631
Query: 601 SGYPVADRCHSW-----KGFKTFNQD---GSTSPF------------------------- 627
P A S+ +G K D G+T+P
Sbjct: 632 QMVPNASPKKSYNYPQIEGVKRDESDLARGNTAPRLSMHPGDEANTREAVAAWRAWKLTT 691
Query: 628 ---KSSSADLINLIVSVEDTGQGI--PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISK 682
+++ N V V GI PL Q+R+F PF Q S SR +GGTGIGLSI +
Sbjct: 692 ISGRNACKPPKNFTVIVSVEDTGIGIPLHLQNRLFQPFSQADSSTSREYGGTGIGLSICQ 751
Query: 683 YLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKAL 742
LV M G + S P GS F FT + S + S + P ++ +GM
Sbjct: 752 KLVKLMNGALTVKSKPGEGSVFEFTLPL-SVPEESGDKLSCCVKASPED-KTKLRGMHVA 809
Query: 743 VVDPRPIRAKVSRYHIQRLGIQV----EVVSDQLQCLSQIASGSKIINMILVEQEVWEKD 798
+VD +R +V+ +++ LGI + E V LQ L Q +K+ +++ + + +D
Sbjct: 810 LVDSNIVRQEVTASYLRCLGICIDSFTEDVPTTLQFL-QREEKTKVHAVVVDLKGLPHED 868
Query: 799 TSVSTLFVNNLRKLGCGFQSKLFLLANSIS-SSRANTSTDGVSIPSVIMKPLRSSMLAAS 857
T + N+ L L +LA S+ + I +I KPLR + LAA
Sbjct: 869 ILELTRSIRNIPSL-----KALPMLALSMGLTPTGEIELKETGISHIIRKPLRYTTLAAV 923
Query: 858 LQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVE 917
L +G+ + ++ L ++ +L GR++L+VDDN VN +VA++ L RYGA V V
Sbjct: 924 LLETIGIPARAPMKKINLNAI----MLSGRRLLVVDDNMVNRRVASSMLTRYGAIVSTVN 979
Query: 918 RGKKATELLMPP---HQFDACFMDIQMPEMDGYE 948
G +A + +FD MDIQMPEMDG+E
Sbjct: 980 GGVEAVNAVKNQKIGKEFDLVLMDIQMPEMDGWE 1013
>gi|168041528|ref|XP_001773243.1| CKI3a AtCKI1/2-like cytokinin receptor [Physcomitrella patens
subsp. patens]
gi|162675438|gb|EDQ61933.1| CKI3a AtCKI1/2-like cytokinin receptor [Physcomitrella patens
subsp. patens]
Length = 1020
Score = 313 bits (801), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 277/916 (30%), Positives = 438/916 (47%), Gaps = 119/916 (12%)
Query: 111 ATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTE 170
A + R + C+ R +L+ Q ++N + L+++ P M + +
Sbjct: 59 ALKFREQEFDLKCENRKEVLKSQVENNLNASFVIVGLLASV-----PEVSADM-WVNFAT 112
Query: 171 RTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPV 230
RT F RP + Y RV + R FE++ +I ++ H+ V + S + EY+PV
Sbjct: 113 RTLFLRPTVKRLVYVERVPAANRAAFERKWNTSILYIN---HSNVTEVR-SANDTEYSPV 168
Query: 231 IF-AQDTVSHVISLDMLSGKEDRENVLRARASGKGVLT-APFRLLKTNRLGVILTFAVYK 288
+F D V + +D + R + AR +G L+ R T ++G L +
Sbjct: 169 VFETDDKVPKYLFVDAGAYPAYRSAIDAARDTGLFTLSPVTPRRDGTWQMGAYLAYYGPG 228
Query: 289 RELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMY 348
R+ S ++ R +A GY+G + ++ + +L + + V N++ + +
Sbjct: 229 RDYTSFSSTEARRQACRGYVGIVMNVTDVFHGVLSRFTDVDDMDVVAV--FNVNSKLESF 286
Query: 349 GS-NVSDDGLWLVSTLNFGDP------FRK-----------HEMRCRFKQKAPWPLLAIS 390
S N S + DP F K E+RC K+ LLA+
Sbjct: 287 DSYNCSAAASSKSCAVPLFDPAGRASEFSKAAVTWEYGTQHFEVRCLPKRN--LKLLALR 344
Query: 391 TSIGILVIASLVGHIFQATV----NRIAKVEEDYHGMMEL-------KKKAEAADVAKSQ 439
+I ++ SLV F V R+ +EE+ M ++ K AEAAD AKS
Sbjct: 345 AAIAWPLLMSLVVIFFSIIVYLVLKRMQAIEEEVRLMEKMNEDLNVAKLAAEAADKAKSN 404
Query: 440 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVE 499
FLATVSHEIRTPMNGV+GM ++LM T L Q +YV+ QASG L++LIN+VLD +K+E
Sbjct: 405 FLATVSHEIRTPMNGVIGMTNLLMGTNLTTQQLEYVKVVQASGNTLIALINDVLDLSKIE 464
Query: 500 SGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITN 559
+G++ELE+V++++R +D V LF ++Q +EL++ + D VP ++GDPGRF QI+ N
Sbjct: 465 AGRMELESVAYDIRKEVDGVFLLFDDRAQQNKIELSMLVHDAVPNYIVGDPGRFHQILAN 524
Query: 560 LMGNSIKFTEKGHIFVTVYLV------EEVVDSIEVETELSSSKNTLSGYPVADRCHSW- 612
++ N++KFT +G+I V V + + + +I ++ + + + D S
Sbjct: 525 VVSNALKFTREGNILVCVRAMRVSQGNKALFTAITIDQNSAVPGDVQPSQVLPDEPFSLV 584
Query: 613 --KGFKTFN----------QDGSTSPFKSSSADL-------------------INLIVSV 641
G K + Q GS S +S + DL LIVSV
Sbjct: 585 GSDGMKLYEDQDVAPRLSIQPGSESN-RSEALDLWRKWEWKNLSGSHCKPPNQFILIVSV 643
Query: 642 EDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 701
EDTG GIP + R+F PF Q + SR HGGTGIGL IS+ L+ M G I +S P G
Sbjct: 644 EDTGPGIPCHMEPRLFQPFSQADSNSSREHGGTGIGLFISQKLIKLMNGTIRVMSEPGKG 703
Query: 702 STFTFT--AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 759
S F FT A F + + S + +G+ +VD + +++ ++
Sbjct: 704 SVFEFTLPASFADTAGGSKPQLPME--------DKRLKGLHVALVDTDLVHREITASFLR 755
Query: 760 RLGIQVEVVSDQLQCLSQI--ASGSKIINMILVEQEVWEKDTSV----STLFVNNLRKLG 813
G+ VE ++D +Q +I +G + ++V+ + +V S +L+ L
Sbjct: 756 YSGMHVE-LADDVQSTMEILQRTGGPTLQAVMVDIKGLPSAPAVELARSIRSTPSLKAL- 813
Query: 814 CGFQSKLFLLANSISSSRANTSTD-GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRN 872
S L L +N +S D GVS +I K LR S ++ L AMG+ + ++
Sbjct: 814 ----SVLVLTSNPVSPPGEKELKDAGVSF--IISKSLRLSTGSSVLLEAMGLKPQAPVKK 867
Query: 873 WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF 932
++ LLLG+++L+VDDN VN +VA + LKRYGA V V G + +L
Sbjct: 868 KANDNV---KLLLGKRLLVVDDNMVNQRVATSMLKRYGAIVSSVNSGIEDKKL------- 917
Query: 933 DACFMDIQMPEMDGYE 948
D MDIQM EMDG++
Sbjct: 918 DLVLMDIQMSEMDGWQ 933
>gi|302755686|ref|XP_002961267.1| hypothetical protein SELMODRAFT_73679 [Selaginella moellendorffii]
gi|300172206|gb|EFJ38806.1| hypothetical protein SELMODRAFT_73679 [Selaginella moellendorffii]
Length = 305
Score = 299 bits (766), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 158/281 (56%), Positives = 197/281 (70%), Gaps = 3/281 (1%)
Query: 307 YLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFG 366
Y+GG FD +SLVE LL QL+ QTI VNV D+ N S+P+ MYG N+ D V + FG
Sbjct: 22 YVGGAFDFKSLVENLLQQLSKSQTIIVNVNDVMNKSNPLVMYGLNILDGNEIEVCQVEFG 81
Query: 367 DPFRKHEMRCRFKQK--APWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMM 424
DPF K EMRC +K LL + +L + + IF A N I KVEE Y M
Sbjct: 82 DPFWKDEMRCDAGEKNLHSHRLLCGPPPLELLSLFCWLTQIFYAAGNCITKVEEGYCKME 141
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
+LK +AE+ADVAKSQFLATVSHEIRTPMNG LGML MLMD +LD TQ+DY TA SGK
Sbjct: 142 DLKVRAESADVAKSQFLATVSHEIRTPMNGALGMLQMLMDIKLDSTQKDYTHTALESGKQ 201
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L+ INEVLDQAK+ESG++ELE V F L IL+++L+LFS K +DK +ELA Y+S+RVP+
Sbjct: 202 LIKHINEVLDQAKIESGRMELETVPFKLHTILENILTLFSAKDKDKEIELAAYVSERVPD 261
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 585
L G P R QI+T+L+GNSIKF + GHIFV+++L E+V D
Sbjct: 262 VL-GHPVRLHQIVTSLVGNSIKFPDSGHIFVSMHLEEDVND 301
>gi|358347444|ref|XP_003637767.1| Histidine kinase [Medicago truncatula]
gi|355503702|gb|AES84905.1| Histidine kinase [Medicago truncatula]
Length = 397
Score = 296 bits (758), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 163/343 (47%), Positives = 209/343 (60%), Gaps = 79/343 (23%)
Query: 217 KDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTN 276
+ E SP+ +EYAPVIF EDREN++RARA+GK V+T+PFRLL ++
Sbjct: 132 ESEASPVRDEYAPVIF-----------------EDRENIMRARATGKAVMTSPFRLLGSH 174
Query: 277 RLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVY 336
LGV+LTF VYK + P N T E I+AT G NVY
Sbjct: 175 HLGVVLTFPVYKSKFPPNPTTEELIKATAG-------------------------ISNVY 209
Query: 337 DITNLSHPISMYGSNVSDDGLWLV--STLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIG 394
D+TN + P+ MYG+ + + LV S L+FGDP+RKH+M CR+ QKAP A+ST+I
Sbjct: 210 DVTNSTDPLIMYGNQYEEGDVSLVHESKLDFGDPYRKHQMICRYHQKAPPNWTALSTAIL 269
Query: 395 ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 454
VI L+G+I N I KVE+D+H M ELK +AEAADVAKSQFLATVSHEIRTPMNG
Sbjct: 270 FFVILLLIGYILYGAGNYIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNG 329
Query: 455 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514
+L VLD+AK+E+GKLELEAV F+LR+
Sbjct: 330 IL-----------------------------------VLDRAKIEAGKLELEAVPFDLRS 354
Query: 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 557
ILDDVLSLFS KS+ KG+ELAV++SD+VP+ ++GDPG+ +I
Sbjct: 355 ILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGKDNIVI 397
>gi|302803079|ref|XP_002983293.1| hypothetical protein SELMODRAFT_117801 [Selaginella moellendorffii]
gi|300148978|gb|EFJ15635.1| hypothetical protein SELMODRAFT_117801 [Selaginella moellendorffii]
Length = 283
Score = 292 bits (748), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 157/280 (56%), Positives = 197/280 (70%), Gaps = 3/280 (1%)
Query: 308 LGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGD 367
+GG FD +SLVE LL QL+ QTI VNV D+TN S+P+ MYG N+ D V + FGD
Sbjct: 1 VGGAFDFKSLVENLLQQLSESQTIIVNVNDVTNKSNPLVMYGLNILDGNEIEVCQVEFGD 60
Query: 368 PFRKHEMRCRFKQKAPWPLLAI-STSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMEL 426
PF K EMRC +K + +T+ GI+VI LV IF A N I KVEE Y M +L
Sbjct: 61 PFWKDEMRCDAGEKNLHSHSVVWTTTFGIVVIVLLVAQIFYAAGNCITKVEEGYCKMEDL 120
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGM-LDMLMDTELDVTQQDYVRTAQASGKAL 485
K +AE+ADVAKSQFLATVSHEIRTPMNG LG+ + +LD TQ+DY TA SGK L
Sbjct: 121 KVRAESADVAKSQFLATVSHEIRTPMNGALGVHVANAHGIKLDSTQKDYTHTALESGKQL 180
Query: 486 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 545
+ INEVLDQAK+ESG++ELE V F L ILD++L+LFS K++DK +ELA Y+S+RVP+
Sbjct: 181 IKHINEVLDQAKIESGRMELETVPFKLHTILDNILTLFSAKNKDKEIELAAYVSERVPDV 240
Query: 546 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 585
L G P R I+T+L+GNSIKFT+ GHIFV+++L E V D
Sbjct: 241 L-GHPVRLHLIVTSLVGNSIKFTDSGHIFVSMHLEENVND 279
>gi|226875177|gb|ACO88936.1| cytokinin histidine-kinase receptor 1 [Vitis vinifera]
Length = 235
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 154/240 (64%), Positives = 184/240 (76%), Gaps = 18/240 (7%)
Query: 455 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514
VLGML MLMD+ LD QQDY TA ASGK L+SLINEVLDQAK+ESG+LELEAV F+LRA
Sbjct: 1 VLGMLKMLMDSGLDANQQDYAETAHASGKDLISLINEVLDQAKIESGRLELEAVPFDLRA 60
Query: 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHI 573
LD+VLSLFSGKS +KG+ELAVYISD+VPE +IGDPGRFRQIITNL+GNSIKFT +KGHI
Sbjct: 61 ALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQIITNLVGNSIKFTHDKGHI 120
Query: 574 FVTVYLVEEVVDSIEVETEL------------SSSKNTLSGYPVADRCHSWKGFKTFNQD 621
FV+V+L +EVV ++ E+ ++S NTLSG+PV +R SW+ FK +
Sbjct: 121 FVSVHLADEVVGPPDLRDEVLRQSLNIVHDSSNNSYNTLSGFPVVNRWKSWEKFKKLS-- 178
Query: 622 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSIS 681
T + +S +I L+V+VEDTG GIP EAQSRIF PFMQ S SRT+GGTGIGLSIS
Sbjct: 179 -CTDSMEETS--IIKLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRTYGGTGIGLSIS 235
>gi|10241599|emb|CAC09578.1| histidine kinase receptor [Fagus sylvatica]
Length = 247
Score = 285 bits (730), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 140/202 (69%), Positives = 163/202 (80%)
Query: 747 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFV 806
RP AK+SRYHIQRLGI VEVVSD Q S+I+SG+K+++M+LVEQEVW++DT +S F+
Sbjct: 3 RPSLAKMSRYHIQRLGISVEVVSDLNQGWSKISSGNKVVDMVLVEQEVWDRDTHISASFI 62
Query: 807 NNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN 866
NL+K+ G KLFLLANSISSSR N +T G P MKPLR+SMLAASLQRAMGVG+
Sbjct: 63 INLKKIDHGIPPKLFLLANSISSSRTNAATSGGFSPYTTMKPLRASMLAASLQRAMGVGS 122
Query: 867 KGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 926
KGN+RN ELPS+SLR L GRKILI+DDNNVNLKVAA LK+YGA VVC E KA E L
Sbjct: 123 KGNLRNRELPSLSLRSLPRGRKILIIDDNNVNLKVAAGALKKYGADVVCAESRIKAIEFL 182
Query: 927 MPPHQFDACFMDIQMPEMDGYE 948
PPH+FDACFMDIQMPEMDG+E
Sbjct: 183 KPPHRFDACFMDIQMPEMDGFE 204
>gi|254409902|ref|ZP_05023682.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196182938|gb|EDX77922.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1258
Score = 270 bits (690), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 185/522 (35%), Positives = 275/522 (52%), Gaps = 44/522 (8%)
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489
A AA AKS+FLAT+SHEIRTPMNGV+GM +L+DT+L QQ++V T + SG L+++I
Sbjct: 541 ALAATRAKSEFLATMSHEIRTPMNGVIGMTGLLLDTQLTSQQQEFVTTIRHSGDTLLTII 600
Query: 490 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 549
N++LD +K+ESGKLELE VSF+L+ +++ L L + K+ DK +ELA I+ + P +IGD
Sbjct: 601 NDILDFSKIESGKLELEEVSFDLQVCIENCLDLLAAKASDKNLELAYQITPQTPRMIIGD 660
Query: 550 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 609
R RQI+ NL+ N++KFT+ G + V+V E +D + E + + T P
Sbjct: 661 VTRLRQILVNLLSNAVKFTQSGEVIVSVN--AEKLDYEQWERPETKTSLTPRITPSVATP 718
Query: 610 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669
H F +V+DTG GIP E +R+F PF QV S +R
Sbjct: 719 HYRIQF------------------------AVKDTGIGIPPERLNRLFQPFSQVDSSTTR 754
Query: 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 729
+GGTG+GL+I K L M G + S +IGSTF FT V ST QQ NQ
Sbjct: 755 KYGGTGLGLAICKQLCEMMGGTMWVESQEDIGSTFYFTLVVPADPST------QQNTNQV 808
Query: 730 NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMIL 789
+ E G + L+VD K+ Q G++ +Q L + G + ++ +
Sbjct: 809 CRL--ELDGQRLLIVDDNDTNRKILMRQAQVWGMECYAAQSGVQALDWLHQGER-FDLAI 865
Query: 790 VEQEVWEKDTSVSTLFVNNLRKL-GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKP 848
++ ++ E D +RKL GC Q+ ++ +S+ + +T + + KP
Sbjct: 866 LDMQMPEMD---GVTLAQKIRKLPGC--QTLPLVMLSSLGELQVDTPDVKQTFAGFLTKP 920
Query: 849 LRSSMLAASLQRAM-GVGNKGNIRNWELPSMSLRH-LLLGRKILIVDDNNVNLKVAAAGL 906
++ S L L +AM G+ K I + + P + + L +IL+ +DN VN +VA L
Sbjct: 921 IKQSQLCDVLMQAMAGIPIKVKIHSAKKPDIDAKMGERLPLRILLAEDNPVNQQVALHLL 980
Query: 907 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+R G G + E L +D FMD+QMPEMDG E
Sbjct: 981 QRMGYRADVAGNGLEVLEALQ-RQPYDVVFMDVQMPEMDGLE 1021
>gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1175
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 178/548 (32%), Positives = 282/548 (51%), Gaps = 48/548 (8%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
V + K +D +++ K+ AE A AKS FLA +SHEIRTPMNGV+GM +L+DT+LD
Sbjct: 377 VTELVKARQD---LIQAKEHAEEATRAKSDFLANMSHEIRTPMNGVIGMTGLLLDTDLDS 433
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
QQ Y RT ++S ++L+++IN++LD +K+E+G+L++E V F+L A+L D + + K+++
Sbjct: 434 EQQHYARTVRSSAESLLTVINDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAEE 493
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
KG+EL + VP + GD GR RQI+ NL+GN++KFTE G + + V EVVD
Sbjct: 494 KGLELICSMDPNVPSMVRGDSGRLRQILMNLVGNAVKFTEHGEVEIRVS-KSEVVD---- 548
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
++ +S P H G K +Q G + ++ L + DTG GIP
Sbjct: 549 ------QRSEVSDQPANRLSHEQTGIK--DQYGDSR--------IVELCFQIRDTGIGIP 592
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+ Q +F F QV S +R GGTG+GL+IS+ L M G G S+ + GSTF FT
Sbjct: 593 QDKQDSLFESFSQVDASTTRKFGGTGLGLAISRQLAEMMGGTAGLESVEDQGSTFWFTVR 652
Query: 710 FGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS 769
G Q Q V + QG++ L+VD ++ R G++ +
Sbjct: 653 LG----------VQDEQQQERPVPACLQGVRTLIVDDNSTNREILRVRFGSWGMRPGEAA 702
Query: 770 DQLQCLSQIASGSKIIN--MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ LS + +K N +L ++ D TL N+++ G ++L +++++
Sbjct: 703 NGSAALSMLHQ-AKAENDPFVLAVLDMQMPDMDGETLG-RNIKEDGQLKDTRLIMMSSAT 760
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL--- 884
+ + S++ KP+ S L ASL++ + ++ +R
Sbjct: 761 GQTGDSRRLHETGFDSILNKPVLPSELYASLEKILARTGAADLPAGHTEPEKIRQGYPDF 820
Query: 885 --LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQ 940
+IL+ +DN VN +VA LK+ G V G++A L +P +D MD+Q
Sbjct: 821 SGTKARILVAEDNMVNQQVALGILKKMGLRADAVANGQEALHALENIP---YDLVLMDVQ 877
Query: 941 MPEMDGYE 948
MPEM G E
Sbjct: 878 MPEMGGLE 885
>gi|392424053|ref|YP_006465047.1| PAS domain S-box [Desulfosporosinus acidiphilus SJ4]
gi|391354016|gb|AFM39715.1| PAS domain S-box [Desulfosporosinus acidiphilus SJ4]
Length = 1367
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 181/533 (33%), Positives = 270/533 (50%), Gaps = 80/533 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AEAA+ AKSQFLA +SHEIRTPMNG+ G L++L ++L Q++Y+R ++S + L+
Sbjct: 848 KRAAEAANQAKSQFLANMSHEIRTPMNGIFGFLELLNHSQLSQVQREYIREVKSSSETLL 907
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
LIN++LD +K+ESGKL LE ++FNLR ++D +SLF + +K +EL I VP+ +
Sbjct: 908 HLINDILDLSKIESGKLTLENLNFNLRTTIEDAMSLFVPTAYEKHLELYTQIKANVPDEV 967
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R +QI++NL+ N++KFTE G + + V VEE KN
Sbjct: 968 SGDPSRLKQILSNLISNALKFTENGEVSIVVETVEE--------------KN-------- 1005
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
GF T V DTG GIP E RIF PF Q S
Sbjct: 1006 -------GFATIR-------------------FEVRDTGIGIPKEDTKRIFRPFDQADAS 1039
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG--NGSSTSNEHNSQQ 724
+R +GGTG+GL+I+K LV MKG IG S+P GSTF FTA F N + +++ S
Sbjct: 1040 TTRKYGGTGLGLAITKELVTIMKGTIGVDSVPGQGSTFYFTAKFKILNKKAVCDKYVS-- 1097
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI----AS 780
+NN + +VD ++ R +++ G +V + LS I S
Sbjct: 1098 LNN-----------VNVFIVDDNDNNRRIVRSYLEDAGCKVMEAKSSDKALSTILNNAYS 1146
Query: 781 GSKIINMILVEQE---VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 837
+ I ++LV+ + D + + + + L +L LL +S A + +
Sbjct: 1147 ENNKIQLVLVDYHMPGINGFDLATALNMIPATKDL------RLILLTSSAQMGDAGRARE 1200
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVG-NKGNIRNWELP-SMSLRHLLLGRKILIVDDN 895
+ + KP+R L + +G+ + N R + + +L K+L+V+DN
Sbjct: 1201 -LGFSGYLTKPVRRDELLNCMSIVLGLERDPENSREIVTKYTHNENQSVLKPKLLLVEDN 1259
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VN KV A LK G G++A E+++ +D FMD QMP MDGYE
Sbjct: 1260 EVNRKVVLATLKSRGMTCDVAMDGQEAYEVMLKK-DYDLVFMDCQMPVMDGYE 1311
>gi|350554177|ref|ZP_08923307.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349788353|gb|EGZ42356.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1595
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 180/567 (31%), Positives = 285/567 (50%), Gaps = 89/567 (15%)
Query: 403 GHIFQATVNRIA--KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 460
G+I T + A +++E +L +AE A+ AKS+FLA +SHEIRTPMNGV+GM
Sbjct: 891 GYISDVTERKHAEQRLQETTEHAKQLAVQAERANAAKSEFLANMSHEIRTPMNGVIGMTG 950
Query: 461 MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 520
+L+D+EL+ Q+ T S ++L+SLIN++LD +K+E+GKL+LEA+ FNL+ +L+D
Sbjct: 951 LLLDSELNAEQRRQAETILNSAESLLSLINDILDFSKIEAGKLDLEALDFNLQYLLEDFA 1010
Query: 521 SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580
+ +G++ +KG+EL ++ P L GDPGR RQI+ NL+GN+IKFT +G + + V LV
Sbjct: 1011 AALAGRAYEKGLELFCVLAPDTPLYLRGDPGRVRQILNNLVGNAIKFTHQGEVGIHVSLV 1070
Query: 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 640
E D+ + L +
Sbjct: 1071 EHREDA------------------------------------------------VLLRFA 1082
Query: 641 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700
V DTG GIP + S +F F QV SI+RT+GGTG+GL+ISK L M+G+IG S +
Sbjct: 1083 VTDTGIGIPPDKVSLLFQKFSQVDGSITRTYGGTGLGLAISKQLAEMMQGDIGVESQEGV 1142
Query: 701 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 760
GSTF FT G G Q+ + ++ ++ALVVD PI+ ++ ++R
Sbjct: 1143 GSTFWFTLSLGVG---------QEPTDARHAWGEPLPAVRALVVDDHPIQCELLCAILER 1193
Query: 761 LGIQVEVVSDQLQCLSQIASG---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817
G+ V + L +I + K ++L +Q++ D + +L ++
Sbjct: 1194 RGVPVSSAGNSADALREIYAALAEHKPYQLLLTDQQMPIMDGETLGQTLQADPRLADLYR 1253
Query: 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV------------- 864
+L +S+SS+ + + KP+R L A LQ + +
Sbjct: 1254 ---VILPSSMSSAEDIERYHAAGFHAYLPKPIRQQELFAVLQALLALPPDRLTHTPIISP 1310
Query: 865 -GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKAT 923
G + I +P + +IL+V+DN+ N +VA L++ G V G++A
Sbjct: 1311 RGPRAAIHAQVIPFAPNK-----VRILLVEDNSTNQQVALGILRKLGLKADAVGNGQEAV 1365
Query: 924 ELL--MPPHQFDACFMDIQMPEMDGYE 948
E + +P +D MD+QMP MDG +
Sbjct: 1366 ETVINIP---YDLILMDVQMPVMDGLQ 1389
>gi|350551958|ref|ZP_08921167.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349795601|gb|EGZ49397.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1343
Score = 256 bits (653), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 177/532 (33%), Positives = 255/532 (47%), Gaps = 73/532 (13%)
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
EL KAE A++AKS FLA +SHEIRTPMNGV+GM +L+DTEL+ Q+ Y S A
Sbjct: 648 ELASKAEQANIAKSHFLANMSHEIRTPMNGVIGMTGLLLDTELNTEQRRYAEIVHTSADA 707
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L++LIN++LD +K+E+ +L+LE + FNL +L+D + + ++ +KG+EL + VP
Sbjct: 708 LLTLINDILDFSKIEAHRLDLEMLDFNLLELLEDFAATLAVRAHEKGLELLCFADPNVPT 767
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 604
+ GDPGR RQI+TNL+ N+IKFT++G + V V+L+ +
Sbjct: 768 QVRGDPGRLRQILTNLVSNAIKFTQQGEVVVRVFLMAQ---------------------- 805
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
A C L SV DTG GIP E Q +F F QV
Sbjct: 806 TAQEC--------------------------TLHFSVRDTGIGIPEEKQDILFEKFTQVD 839
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
S +R +GGTG+GL+ISK L M GEIG S GSTF FT G E +
Sbjct: 840 ASTTRRYGGTGLGLAISKQLAELMGGEIGLHSQEENGSTFWFTVCLGK-----QEQGQAE 894
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 784
+ Q N + G++ LVVD ++ + G++V +D L L + +
Sbjct: 895 IQAQGN---PDLHGVRILVVDDNATNREILITRLNLWGMRVSDYADALSALEALKQAVSV 951
Query: 785 ----INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
+ +++ ++ E D + L K QS ++ S+ +
Sbjct: 952 HKDPFKLAIIDMQMPEMDGET----LGTLIKSDASLQSLKTIMLTSLGMRGDAKRFEQAG 1007
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIR---NWELPS-MSLRHLLLGRKILIVDDNN 896
+ I KPLR L L M G + R E P+ M H + +IL+ +DN
Sbjct: 1008 FSAYITKPLRHLELFNVLSDLMAEGPQTQSRRILTRERPAQMPQHHFNVQARILLAEDNI 1067
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
N KVA + LKR G V G + L +P +D MD+QMP MDG
Sbjct: 1068 TNQKVALSILKRLGLKADTVADGAEVLVALKTIP---YDLVLMDVQMPVMDG 1116
>gi|298529160|ref|ZP_07016563.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510596|gb|EFI34499.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1154
Score = 255 bits (652), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 178/529 (33%), Positives = 277/529 (52%), Gaps = 49/529 (9%)
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
+A+AA AKS+FLA +SHEIRTPMNGV+GM +L++T+L+ TQ+ Y T ++SG+AL++L
Sbjct: 409 RADAASKAKSEFLANMSHEIRTPMNGVIGMTGLLLETDLNETQRRYAETVRSSGQALLAL 468
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
+N++LD +K+ESGKLELEA++F+LR LD+ S+ + K+++KG+E VP+ LIG
Sbjct: 469 LNDILDFSKIESGKLELEALNFDLRDTLDNFASMMAFKAEEKGLEFICSADPDVPDNLIG 528
Query: 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
DPGR RQI+TNL+GN++KFTE+G + V V + E V E
Sbjct: 529 DPGRIRQILTNLVGNAVKFTERGEVVVRVSIQESGVRRQETGD----------------- 571
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
K +T ++ T S + L SV DTG GIP + +F F QV S++
Sbjct: 572 ----KSQETGDKSQETGDKSQESEEFCMLRFSVRDTGIGIPEDKIGLLFQSFSQVDASVT 627
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 728
R GGTG+GL+IS+ L M GE+G SI G+TF FT + +Q
Sbjct: 628 RKFGGTGLGLAISRQLAELMGGEVGVESIEGQGTTFWFTVPLSLAETC----------DQ 677
Query: 729 PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---SKII 785
S+S++ +G++ALVVD ++ G++ + D L ++ +
Sbjct: 678 IPSMSADLRGLRALVVDDNATNREILLTRFLDWGLRPDEAKDGPTALGRLYTALAEDDPY 737
Query: 786 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 845
++ +++ ++ D + +KL +L +++++ A D + + +
Sbjct: 738 HLAIIDMQMPGMDGEFLGRTIRADQKLQ---DVRLVMMSSAGMQGDARRMKD-IWFAAFL 793
Query: 846 MKPLRSSMLAASLQRAMGVGNKGNI----RNWELPSMSLRHLLLGRK--ILIVDDNNVNL 899
KPLR L L M ++ E S S + RK IL+ +DN N
Sbjct: 794 AKPLRHDELFDCLSLVMAGDEPQDLVTRHSAREEKSRSGKIDFSDRKARILLAEDNITNQ 853
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
+VA A LK +G + V G +A + L +P +D MD+QM EMDG
Sbjct: 854 QVALAMLKNFGLSADAVANGLEAIKALKTVP---YDLVLMDVQMLEMDG 899
>gi|259156506|gb|ACV96450.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Mex1]
Length = 1268
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 187/577 (32%), Positives = 295/577 (51%), Gaps = 82/577 (14%)
Query: 398 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
+A +G F T +VE + + K++AE+A+ AKS+FLA +SHEIRTPMNGVLG
Sbjct: 503 LAGFLGIAFDLTKQLKYEVE-----LAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLG 557
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
+L ++ ++ LD Q DY+ A ++ K+L++L+N++LD +K+E+GKLEL+ F+L +L
Sbjct: 558 LLQLVANSTLDQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQ 617
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
D+ +FS ++ KG+E+ ++ VPE L+GD R +Q++ NL+GN+IKFT+KG I +++
Sbjct: 618 DIGLVFSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISI 677
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 637
R S +G INL
Sbjct: 678 ------------------------------RSQSLP-------EGE-----------INL 689
Query: 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697
S++DTG GI LE Q+ +F+ F Q SISR +GGTG+GL+ISK LV M GEIG S
Sbjct: 690 SFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIGVESE 749
Query: 698 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 757
GSTF+F V N + + N+Q + S+E + L+VD + +
Sbjct: 750 FGCGSTFSFNVVVRNAEKRAIQ------NSQTFTRSNE--KLSVLIVDDNDSSRIILQGI 801
Query: 758 IQRLGIQVEVVSDQLQC---LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814
LG Q ++ SD + + Q S +++ V+ W F LR+L
Sbjct: 802 AVSLGWQAKIASDAQEASLLVKQAHRDSTRYDVVFVD---WRMPGKDGLTFARELRELHS 858
Query: 815 GFQSKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW 873
S + ++ + D + ++KP+ +M+ +++R + G++ +
Sbjct: 859 SVVSLIVMITAHGKELLDEQNNDYERYLDGFLIKPVTKNMMLQAVKRVVF----GDL-DL 913
Query: 874 ELPSMSLRHL--LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPH 930
LP+ L H L G +L+V+DN N VA+ L++ GA + G++A E+L
Sbjct: 914 SLPTSPLPHELPLQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALEMLESTAE 973
Query: 931 QFDACFMDIQMPEMDGYEM------LPCFESFLLIAI 961
FD MDIQMP MDGY+ LP + +IAI
Sbjct: 974 HFDMVLMDIQMPGMDGYQTTREIRKLPRHQLLPIIAI 1010
>gi|77543221|gb|ABA87031.1| putative histidine kinase [Vibrio cholerae]
Length = 1268
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 187/577 (32%), Positives = 295/577 (51%), Gaps = 82/577 (14%)
Query: 398 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
+A +G F T +VE + + K++AE+A+ AKS+FLA +SHEIRTPMNGVLG
Sbjct: 503 LAGFLGIAFDLTKQLKYEVE-----LAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLG 557
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
+L ++ ++ LD Q DY+ A ++ K+L++L+N++LD +K+E+GKLEL+ F+L +L
Sbjct: 558 LLQLVANSTLDQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQ 617
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
D+ +FS ++ KG+E+ ++ VPE L+GD R +Q++ NL+GN+IKFT+KG I +++
Sbjct: 618 DIGLVFSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISI 677
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 637
R S +G INL
Sbjct: 678 ------------------------------RSQSLP-------EGE-----------INL 689
Query: 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697
S++DTG GI LE Q+ +F+ F Q SISR +GGTG+GL+ISK LV M GEIG S
Sbjct: 690 SFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGGEIGVESE 749
Query: 698 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 757
GSTF+F V N + + N+Q + S+E + L+VD + +
Sbjct: 750 FGCGSTFSFNVVVRNAEKRAIQ------NSQTFTRSNE--KLSVLIVDDNDSSRIILQGI 801
Query: 758 IQRLGIQVEVVSDQLQC---LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814
LG Q ++ SD + + Q S +++ V+ W F LR+L
Sbjct: 802 AVSLGWQAKIASDAQEASLLVKQAHRDSTRYDVVFVD---WRMPGKDGLTFARELRELHS 858
Query: 815 GFQSKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW 873
S + ++ + D + ++KP+ +M+ +++R + G++ +
Sbjct: 859 SVVSLIVMITAHGKELLDEQNNDYERYLDGFLIKPVTKNMMLQAVKRVVF----GDL-DL 913
Query: 874 ELPSMSLRHL--LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPH 930
LP+ L H L G +L+V+DN N VA+ L++ GA + G++A E+L
Sbjct: 914 SLPTSPLPHELPLQGISLLLVEDNLTNQLVASELLQQLGATIKIASSGEEALEMLESTAE 973
Query: 931 QFDACFMDIQMPEMDGYEM------LPCFESFLLIAI 961
FD MDIQMP MDGY+ LP + +IAI
Sbjct: 974 HFDMVLMDIQMPGMDGYQTTREIRKLPRHQLLPIIAI 1010
>gi|298528781|ref|ZP_07016185.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512433|gb|EFI36335.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1625
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 184/592 (31%), Positives = 284/592 (47%), Gaps = 85/592 (14%)
Query: 368 PFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELK 427
PF R + + A WP+ I + GHI T + ++++ + E +
Sbjct: 866 PFVSARGRRLWVRTAAWPVYDSGR------IVRVAGHIMDITELKQSQLD-----LQEAR 914
Query: 428 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 487
KA+ A AKS+FLA +SHEIRTPMNGV+GM D+LMDTEL Q+ + Q+SG+AL++
Sbjct: 915 DKAQEATRAKSEFLANMSHEIRTPMNGVIGMTDLLMDTELRPEQRSLAESIQSSGEALLA 974
Query: 488 LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 547
LIN++LD +K+E+G+LELE+V FNLR +L+D+ SL + ++ +KG+EL VP +
Sbjct: 975 LINDILDFSKIEAGRLELESVDFNLRYLLEDLASLMAVRADEKGLELICLPDPDVPAQVQ 1034
Query: 548 GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 607
GDPGR RQI+TNL+GN+IKFT +G + V V +E+S+
Sbjct: 1035 GDPGRLRQILTNLVGNAIKFTHQGEVVVRVQ-----------RSEVSA------------ 1071
Query: 608 RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667
D + L+ +V+DTG GIP + +F F QV S
Sbjct: 1072 -------------------------DDVLLLFTVQDTGIGIPEDKIDLLFNKFSQVDAST 1106
Query: 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 727
+R GGTG+GL+IS+ L M GE+G S G F FTA Q+
Sbjct: 1107 TRKFGGTGLGLAISRQLAEMMGGEVGVQSEYGRGCKFWFTARL----------TLQKKQE 1156
Query: 728 QP-NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSK 783
+P ++ + G L+VD ++ + ++ G++VE S + L+ L ++ S
Sbjct: 1157 EPLPALPQDLHGEHILIVDDNETNLEILKKQLEAWGVEVEQASGGHEALRILDRVYSEGN 1216
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
M +++ + D ++K G F ++ S+ + +
Sbjct: 1217 SFAMAILDMHMPAMDGGE---LGQRIKKSG-KFNDLPLVMLTSLGRPGDAKIFEEQGFNA 1272
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKG-------NIRNWELPSMSLRHLLLGRKILIVDDNN 896
+ KP+R S L +L + K + E+ + +L+ +DN
Sbjct: 1273 YLNKPVRQSELFDTLLTVLSSAGKAPGHSIITRHQAREIKRQQSELIKFKGHVLVAEDNP 1332
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VN KVA L + G + V+ G KA E L +D MD+QMPEMDG E
Sbjct: 1333 VNQKVAVGLLNKMGLSADIVDTGLKAVEALQ-NQSYDLVLMDVQMPEMDGLE 1383
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 804 LFVNNLRKLGCGF-QSKLFLLANSISSSRANTSTD--GVSIPSVIMKPLRSSMLA-ASLQ 859
L + ++ G G + K+ LL N S A+T+ G + I + L M +Q
Sbjct: 1075 LLLFTVQDTGIGIPEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAEMMGGEVGVQ 1134
Query: 860 RAMGVGNK-------GNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAA 912
G G K + E P +L L G ILIVDDN NL++ L+ +G
Sbjct: 1135 SEYGRGCKFWFTARLTLQKKQEEPLPALPQDLHGEHILIVDDNETNLEILKKQLEAWGVE 1194
Query: 913 VVCVERGKKATELL----MPPHQFDACFMDIQMPEMDGYEM 949
V G +A +L + F +D+ MP MDG E+
Sbjct: 1195 VEQASGGHEALRILDRVYSEGNSFAMAILDMHMPAMDGGEL 1235
>gi|422306135|ref|ZP_16393320.1| sensory box protein [Vibrio cholerae CP1035(8)]
gi|408627199|gb|EKL00016.1| sensory box protein [Vibrio cholerae CP1035(8)]
Length = 1268
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 181/552 (32%), Positives = 286/552 (51%), Gaps = 77/552 (13%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ + K++AE+A+ AKS+FLA +SHEIRTPMNGVLG+L ++ ++ LD Q DY+ A ++
Sbjct: 523 LAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANSTLDQRQADYIEKAYSAA 582
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
K+L++L+N++LD +K+E+GKLEL+ F+L +L D+ +FS ++ KG+E+ ++ V
Sbjct: 583 KSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAEQKGLEVLYDVTADV 642
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
PE L+GD R +Q++ NL+GN+IKFT+KG I +++
Sbjct: 643 PEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISI------------------------- 677
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
R S +G INL S++DTG GI LE Q+ +F+ F Q
Sbjct: 678 -----RSQSLP-------EGE-----------INLSFSIKDTGIGITLEQQNALFSGFQQ 714
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
SISR +GGTG+GL+ISK LV M GEIG S GSTF+F V N + +
Sbjct: 715 ADSSISRRYGGTGLGLAISKRLVNLMGGEIGVESEFGCGSTFSFNVVVRNAEKRAIQ--- 771
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC---LSQIA 779
N+Q + S+E + L+VD + + LG Q ++ SD + + Q
Sbjct: 772 ---NSQTFTRSNE--KLSVLIVDDNDSSRIILQGIAVSLGWQAKIASDAQEASLLVKQAH 826
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
S +++ V+ W F LR+L S + ++ + D
Sbjct: 827 RDSTRYDVVFVD---WRMPGKDGLTFARELRELHSSVVSLIVMITAHGKELLDEQNNDYE 883
Query: 840 S-IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH--LLLGRKILIVDDNN 896
+ ++KP+ +M+ +++R + G++ + LP+ L H L G +L+V+DN
Sbjct: 884 RYLDGFLIKPVTKNMMLQAVKRVVF----GDL-DLSLPTSPLPHELPLQGISLLLVEDNL 938
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPHQFDACFMDIQMPEMDGYEM------ 949
N VA+ L++ GA + G++A E+L FD MDIQMP MDGY+
Sbjct: 939 TNQLVASELLQQLGATIKIASSGEEALEMLESTAEHFDMVLMDIQMPGMDGYQTTREIRK 998
Query: 950 LPCFESFLLIAI 961
LP + +IAI
Sbjct: 999 LPRHQLLPIIAI 1010
>gi|376002915|ref|ZP_09780735.1| putative two-component sensor and regulator, histidine kinase
[Arthrospira sp. PCC 8005]
gi|375328680|emb|CCE16488.1| putative two-component sensor and regulator, histidine kinase
[Arthrospira sp. PCC 8005]
Length = 1242
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 183/537 (34%), Positives = 270/537 (50%), Gaps = 76/537 (14%)
Query: 425 ELKKKAEAA---DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL K EAA KSQFLA +SHEIRTPMNGVLGM +L+ TELD Q+D+V+ + S
Sbjct: 567 ELVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTELDTKQKDFVQAIRTS 626
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
L+S+IN++LD +K+E+ ++ELE + F+L L++++ L + ++++KG+ELA +
Sbjct: 627 ADHLLSIINDILDFSKLEAQEIELEELDFDLEECLENIIDLLAAQAENKGIELAAIVDRN 686
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
VP L GDPGR RQ++ NLM N IKFT G EV +S N
Sbjct: 687 VPRYLRGDPGRLRQVLLNLMSNGIKFTPAG----------------EVTLRVSRPPNYDI 730
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
P+ R V+DTG GIP EAQ R+F F
Sbjct: 731 NAPLTLR------------------------------YEVQDTGIGIPAEAQERVFEAFS 760
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
QV S +R GGTG+GL I K L+ M GEIG S+ + GSTF FT F + S
Sbjct: 761 QVDASTTRKFGGTGLGLVICKQLLEVMGGEIGLESVVDQGSTFWFTLPFSISKTAS---- 816
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--- 778
N P++++ +K LVVD + RY IQ G++++ SD LS++
Sbjct: 817 ---FPNLPDTLTK----LKILVVDANASVRQSVRYLIQSWGMELQEASDPEMALSKLRDA 869
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN-SISSSRANTSTD 837
A ++ N+ + +Q + + N + +KL L+ + + SS + D
Sbjct: 870 AHNNQPFNLAIFDQNLLIYGKQNLAAVIQNEPLMSA---TKLVLMTSMRLLSSVEDLLDD 926
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL-------PSMSLRHLLLGRKIL 890
G++ S ++KP+R+S L +L AM N+ + S +L L K+L
Sbjct: 927 GLA-KSYLIKPVRASRLFDALLTAMANEITVNLAEFRSGRDSLGDNSSTLSPAGLDLKVL 985
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
+ +D+ +N +V L G E G++ ELL H +D FMD QMP++DGY
Sbjct: 986 LAEDHPINQQVLLNQLSLLGIEADLAENGEQVLELLNDRH-YDLVFMDCQMPKLDGY 1041
>gi|423067354|ref|ZP_17056144.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
gi|406710928|gb|EKD06130.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
Length = 1242
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 183/544 (33%), Positives = 269/544 (49%), Gaps = 90/544 (16%)
Query: 425 ELKKKAEAA---DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL K EAA KSQFLA +SHEIRTPMNGVLGM +L+ TELD Q+D+V+ + S
Sbjct: 567 ELVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTELDTKQKDFVQAIRTS 626
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
L+S+IN++LD +K+E+ ++ELE + F+L L++++ L + ++++KG+ELA +
Sbjct: 627 ADHLLSIINDILDFSKLEAQEIELEELDFDLEECLENIIDLLAAQAENKGIELAAIVDRN 686
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
VP L GDPGR RQ++ NLM N IKFT G EV +S N
Sbjct: 687 VPRYLRGDPGRLRQVLLNLMSNGIKFTPAG----------------EVTLRVSRPPNYDI 730
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
P+ R V+DTG GIP EAQ R+F F
Sbjct: 731 NAPLTLR------------------------------YEVQDTGIGIPAEAQERVFEAFS 760
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
QV S +R GGTG+GL I K L+ M GEIG S+ + GSTF FT F + S
Sbjct: 761 QVDASTTRKFGGTGLGLVICKQLLEVMGGEIGLESVVDQGSTFWFTLPFSISKTAS---- 816
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--- 778
N P++++ +K LVVD + RY IQ G++++ SD LS++
Sbjct: 817 ---FPNLPDTLTK----LKILVVDANASVRQSVRYLIQSWGMELQEASDPEMALSKLRDA 869
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS--------SS 830
A ++ N+ + +Q L + + L Q++ + A + SS
Sbjct: 870 AHNNQPFNLAIFDQ----------NLLIYGKQNLAAVIQNEPLMSATKLVLMTSMRRLSS 919
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL-------PSMSLRHL 883
+ DG++ S ++KP+R+S L +L AM N+ + S +L
Sbjct: 920 VEDLLDDGLA-KSYLIKPVRASRLFDALLTAMANEITVNLAEFHSGRDSLGDNSSTLSPA 978
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
L K+L+ +D+ +N +V L G E G++ ELL H +D FMD QMP+
Sbjct: 979 GLDLKVLLAEDHPINQQVLLNQLSLLGIEADLAENGEQVLELLNDRH-YDLVFMDCQMPK 1037
Query: 944 MDGY 947
+DGY
Sbjct: 1038 LDGY 1041
>gi|298528353|ref|ZP_07015757.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512005|gb|EFI35907.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1437
Score = 253 bits (646), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 170/528 (32%), Positives = 271/528 (51%), Gaps = 53/528 (10%)
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489
AE A AKS+FLA +SHEIRTPMNGV+GM +L+DT+LD QQ Y RT ++S ++L+++I
Sbjct: 692 AEEATKAKSEFLANMSHEIRTPMNGVIGMTGLLLDTDLDSEQQHYARTVRSSAESLLTVI 751
Query: 490 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 549
N++LD +K+E+G+L++E V F+L A+L D + + K+++KG+EL + VP + GD
Sbjct: 752 NDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAEEKGLELICSMDPNVPSMVRGD 811
Query: 550 PGRFRQIITNLMGNSIKFTEKGHIFVTV-YLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
GR RQI+ NL+GN++KFTE G + + V +V + ++ ET+ +S
Sbjct: 812 SGRLRQILMNLVGNAVKFTEHGEVEIKVSRMVNDECENPNAETQENS------------- 858
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
D S F + + L++ SV DTG GIP + Q +F F QV S +
Sbjct: 859 -----------HDLYRSSFTTQHSCLMHF--SVRDTGIGIPEDKQDSLFESFSQVDASTT 905
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 728
R GGTG+GL+IS+ L M G G S+ GSTF FT G +H QQ
Sbjct: 906 RKFGGTGLGLAISRQLAEIMGGTAGLESVEGRGSTFWFTVRLG------IQHEQQQERPA 959
Query: 729 PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV---SDQLQCLSQIASGSKII 785
P QG++ L+VD + R + G++ E S L L Q + +
Sbjct: 960 PAC----LQGVRTLIVDDNSTNRETLRVRLGSWGMRSEEAANGSTALSMLHQAKADNDPF 1015
Query: 786 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 845
+ +++ ++ + D N+++ G ++L +++++ + S++
Sbjct: 1016 EVAVLDMQMPDMDGET---LGRNIKEDGQLKDTRLIMMSSATGQTGDAKRLHEAGFDSIM 1072
Query: 846 MKPLRSSMLAASLQRAMGVGNKGNI-----RNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
KP+ S L A L++ + + ++ E P +IL+ +DN VN +
Sbjct: 1073 NKPVLPSELYACLEKILAKTDTADLVAEHAEREETPKGYPDFSGTKARILVAEDNMVNQQ 1132
Query: 901 VAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
VA LK+ G V G++ L +P +D MD+QMPEMDG
Sbjct: 1133 VALGILKKMGLRADAVANGREVLHALQNIP---YDLVLMDVQMPEMDG 1177
>gi|389875458|ref|YP_006373193.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
gi|388530413|gb|AFK55609.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
Length = 1592
Score = 253 bits (646), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 174/526 (33%), Positives = 267/526 (50%), Gaps = 45/526 (8%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K AE A AKS FLA +SHEIRTPMNGV+GM +L+ T LD Q+ Y T + S +AL+
Sbjct: 892 KVMAETASQAKSDFLANMSHEIRTPMNGVMGMTQILLGTPLDDEQRGYAETVRDSAEALL 951
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+I+++LD +K+E+ ++ELE + F+L +LD V ++ + +++DKG+E+A
Sbjct: 952 VVIDDILDISKLEADRVELEHLPFDLTGLLDGVAAILAPRARDKGIEIACMAEPDTGTGW 1011
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R RQI+ NL GN++KFTE+GH+ VTV D V E SG
Sbjct: 1012 LGDPTRLRQILLNLAGNAVKFTERGHVAVTVR------DLGPVACEDCEDVGNESG---- 1061
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ C G G+ P D L+ V DTG G+ + +++F F Q S
Sbjct: 1062 EDCEGRSG-------GADRP----GTDHRRLLFEVRDTGIGMSADQTAKLFHKFAQADAS 1110
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R GG+G+GL I LV M G I S P GS F F + + + +
Sbjct: 1111 ITRRFGGSGLGLVICLKLVELMGGTISVDSEPGRGSVFRFEVPLERTTLPAPPEGGEGLE 1170
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSK 783
+ +G +AL+VD P+ +V +H+ LG+++ +D L L + A
Sbjct: 1171 -------AGLRGRRALIVDDLPLNRRVLAHHLGELGMEISEATDVAESLHLLEKAAQTGT 1223
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS-KLFLLANSISSSRANTSTDGVSIP 842
+++++ + + D ++ ++ +L FQ+ + L A+S S+ A D
Sbjct: 1224 PVDLVVTDLNLGGMDGAILGTWL----RLHPRFQTVRTILAASSPPSAEAARVFD----- 1274
Query: 843 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 902
+VI KP+R L +L R+ G+ + L GR++L+V+DN VN VA
Sbjct: 1275 AVITKPIRRGELITALARSFGLSPPPAASAE---APPSAPLTAGRRVLLVEDNTVNQAVA 1331
Query: 903 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+ L++ G V VE G +A E FD FMD+QMP MDG E
Sbjct: 1332 STILEKQGYRVAVVENGAEAIEACR-ADDFDLVFMDVQMPVMDGME 1376
>gi|345863470|ref|ZP_08815681.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent
Tica)]
gi|345125548|gb|EGW55417.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent
Tica)]
Length = 1149
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 186/562 (33%), Positives = 281/562 (50%), Gaps = 88/562 (15%)
Query: 404 HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM 463
H F + I+ ++ + E K+KAE+A AKS+FLA +SHEIRTPMNGVLGM ++L
Sbjct: 462 HYFSMVMRDISDRKQVERELFEAKEKAESAAKAKSEFLAMMSHEIRTPMNGVLGMAELLA 521
Query: 464 DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 523
T+LD QQ+++ SG +L+ +IN++LD +K E+GK+ELEA+SF+L + D + L
Sbjct: 522 GTKLDDEQQEFLEVITQSGNSLLGIINDILDFSKAEAGKIELEAISFDLERTIYDAVRLL 581
Query: 524 SGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 583
S + KG+EL + +P ++GD GR RQIITNL GN+IKFT++GHI
Sbjct: 582 SANASSKGLELIISYPPELPRQVMGDAGRIRQIITNLAGNAIKFTQQGHI---------- 631
Query: 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 643
+I VET T DG TS F+ +SV D
Sbjct: 632 --AINVET-------------------------TKATDG-TSRFR----------ISVID 653
Query: 644 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 703
TG GIP Q R+F F Q S +R +GGTG+GL+ISK LV M G IG S GST
Sbjct: 654 TGIGIPEAQQQRLFKSFTQADSSTTRKYGGTGLGLAISKQLVELMGGSIGVSSTQGEGST 713
Query: 704 FTFTAVFGNGSSTSNEHNSQQMNNQPNSV--SSEFQGMKALVVDPRPIRAKVSRYHIQRL 761
F G +QP ++ +K L++D + ++ R ++
Sbjct: 714 FWLEIPLG--------------LSQPREPLGHADLSRLKCLILDDNLLNQRIFRDQLRSC 759
Query: 762 GIQVEVVS---DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818
G+Q+ V+ + L +++AS +K ++ L++ + + L LR++ ++
Sbjct: 760 GMQIHTVTTGDEALTLATEMASANKPFDIFLLDFNLPGINGEQIAL---RLRQMPAYKET 816
Query: 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL--- 875
+ LL +S + A + V + ++KP+ +L +++ V N + E+
Sbjct: 817 PMILLTSSGNRGDAK-HFEEVGFDAYLIKPVPHQILHEAIEGV--VSNTLQHKEQEIITQ 873
Query: 876 ---------PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 926
PS H + KIL+V+D N KVA++ L + G V + G+ A E L
Sbjct: 874 YHVIEGHTQPSNKTEH--IDAKILLVEDLLPNQKVASSVLSKMGCTVEIADNGRIALERL 931
Query: 927 MPPHQFDACFMDIQMPEMDGYE 948
FD MD QMPEMDG E
Sbjct: 932 -AEDSFDIVLMDCQMPEMDGLE 952
>gi|209524981|ref|ZP_03273526.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|209494630|gb|EDZ94940.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
Length = 1242
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 183/544 (33%), Positives = 269/544 (49%), Gaps = 90/544 (16%)
Query: 425 ELKKKAEAA---DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL K EAA KSQFLA +SHEIRTPMNGVLGM +L+ TELD Q+D+V+ + S
Sbjct: 567 ELVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTELDTKQKDFVQAIRTS 626
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
L+S+IN++LD +K+E+ ++ELE + F+L L++++ L + ++++KG+ELA +
Sbjct: 627 ADHLLSIINDILDFSKLEAQEIELEELDFDLEECLENIIDLLAAQAENKGIELAAIVDRN 686
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
VP L GDPGR RQ++ NLM N IKFT G EV +S N
Sbjct: 687 VPRYLRGDPGRLRQVLLNLMSNGIKFTPAG----------------EVTLRVSRPPNYDI 730
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
P+ R V+DTG GIP EAQ R+F F
Sbjct: 731 NAPLTLR------------------------------YEVQDTGIGIPAEAQERVFEAFS 760
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
QV S +R GGTG+GL I K L+ M GEIG S+ + GSTF FT F + S
Sbjct: 761 QVDASTTRKFGGTGLGLVICKQLLEVMGGEIGLESVVDQGSTFWFTLPFSISKTAS---- 816
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--- 778
N P++++ +K LVVD + RY IQ G++++ SD LS++
Sbjct: 817 ---FPNLPDTLTK----LKILVVDANASVRQSVRYLIQSWGMELQEASDPEMALSKLRDA 869
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS--------SS 830
A ++ N+ + +Q L + + L Q++ + A + SS
Sbjct: 870 AHNNQPFNLAIFDQ----------NLLIYGKQNLAAVIQNEPLMSATKLVLMTSMRRLSS 919
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL-------PSMSLRHL 883
+ DG++ S ++KP+R+S L +L AM N+ + S +L
Sbjct: 920 VEDLLDDGLA-KSYLIKPVRASRLFDALLTAMANEITVNLAEFHSGRDSLGDNSSTLSPA 978
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
L K+L+ +D+ +N +V L G E G++ ELL H +D FMD QMP+
Sbjct: 979 GLDLKVLLAEDHPINQQVLLNQLSLLGIEADLAENGEQVLELLNDRH-YDLVFMDCQMPK 1037
Query: 944 MDGY 947
+DGY
Sbjct: 1038 LDGY 1041
>gi|406895332|gb|EKD39927.1| hypothetical protein ACD_75C00243G0001 [uncultured bacterium]
Length = 713
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 177/552 (32%), Positives = 270/552 (48%), Gaps = 88/552 (15%)
Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
+++E + + KK AE A+VAKSQFLA++SHEIRTPMNGV+G DML+ TELD Q+D
Sbjct: 173 SEIENQTQELRKSKKAAEEANVAKSQFLASMSHEIRTPMNGVIGFTDMLLATELDEEQKD 232
Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
+ T + SG+AL+ LIN++LD +KVE+G++ LE + F+ DV L + K +E
Sbjct: 233 FALTIKRSGEALLGLINDILDFSKVEAGQMSLEYIDFDPEITAHDVCELIRPRVTGKPIE 292
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
+ I D +P + GDPGRFRQ++ NL+GN+ KFTE+G + +++ ++ E ++I T L
Sbjct: 293 VLCRIEDNLPANIKGDPGRFRQVLVNLLGNAAKFTEQGELELSLEVMAETEETI---TLL 349
Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
+ ++T G P ++ FK DGST
Sbjct: 350 AKIRDTGIGIPEDKFSTIFEAFK--QADGST----------------------------- 378
Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
+R +GGTG+GLSI + + G M G I S G+TF FT+V
Sbjct: 379 --------------TRKYGGTGLGLSICRRIAGLMGGRIWVESTLGRGTTFFFTSVMKKS 424
Query: 714 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+S + + + G+K LVVD ++ R + + G++V + D
Sbjct: 425 TSCTAQRPP----------AENLGGVKILVVDDNRANNEILRGILGKAGMEVVTLLDSTT 474
Query: 774 CLSQIASGSK--------IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 825
++++ K I+++++ ++ T + T + N + LLA
Sbjct: 475 AVAELIRAEKENRPFQLAILDLLMPLVSGYDLATGIRTSSLAN---------PSIPLLAY 525
Query: 826 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-------M 878
+ S+ R + + KP R S+L +L R +G GN E+P
Sbjct: 526 TSSTERVAQKCKEAGFTAFLTKPARRSLLLRTLSRILGPGNGAP----EMPEEKKFVTQY 581
Query: 879 SLRHLLLGR-KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM-PPHQFDACF 936
S+R L +IL+ +DN VN K+A L + G V V GK A E P FD
Sbjct: 582 SVREELKQSIRILLAEDNPVNQKLAMMMLSKAGYQVTVVPNGKAAVETFTGTPDGFDTIL 641
Query: 937 MDIQMPEMDGYE 948
MDIQMPEMDGYE
Sbjct: 642 MDIQMPEMDGYE 653
>gi|212558640|gb|ACJ31094.1| Sensory box histidine kinase/response regulator [Shewanella
piezotolerans WP3]
Length = 1771
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 168/538 (31%), Positives = 262/538 (48%), Gaps = 91/538 (16%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ + K A+AA AKS FLA +SHEIRTPMN ++GM + + TELD QQ+YV+ +
Sbjct: 1034 LKQAKDSADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQQNYVQKIDRAS 1093
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
K+L+ +IN++LD +K+E+GKL++E+VSF L +L+D+ +FS K+ DK +EL ++ +
Sbjct: 1094 KSLLGIINDILDFSKIEAGKLDIESVSFQLETMLEDLSDMFSVKAADKQLELLFAVAPNI 1153
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P L GDP R Q++ NLM N++KFT++G + +++ +E V D+
Sbjct: 1154 PRQLEGDPLRLSQVLINLMNNAVKFTDQGEVLLSISQLERVDDA---------------- 1197
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
I L SV D G G+ + ++++F F Q
Sbjct: 1198 --------------------------------ITLRFSVRDNGIGLTEDQRNKLFKSFSQ 1225
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
S +R +GGTG+GL+I K LV M GEIG S GSTF FT F
Sbjct: 1226 ADTSTTRKYGGTGLGLAICKQLVELMGGEIGVESQFGNGSTFFFTVKF------------ 1273
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
+ +N+ E +GM+ LV D + R ++ +G +V+ V Q + +
Sbjct: 1274 KVADNKLIKAGQELEGMRILVADDNATARDILRTTLESMGFEVDTVKSGAQAVERC---- 1329
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS-------ISSSRANTS 835
K T ++ L G ++ ++ANS I S+ ANT
Sbjct: 1330 --------------KTTQYPVALIDWLMPEMNGLETSAAIIANSETPPKILIVSAHANTE 1375
Query: 836 ----TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP-SMSLRHLLLGRKIL 890
+G I I KP+ +S L + ++G +R + + L L G++IL
Sbjct: 1376 LTDHIEGSGIAGYITKPISASRLLDGIMSSLGKNGAIPVRRTGVEVNQKLLTQLKGKRIL 1435
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+V+DN +N +VA L++ G + + G+ A E L FD MD QMP MDGY+
Sbjct: 1436 LVEDNEMNQEVATEFLEQVGITLSIADNGQIALEKL-ATQTFDLVLMDCQMPVMDGYQ 1492
>gi|372272319|ref|ZP_09508367.1| multi-sensor hybrid histidine kinase [Marinobacterium stanieri S30]
Length = 1153
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 172/541 (31%), Positives = 273/541 (50%), Gaps = 90/541 (16%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+++ +++A + AKS+FLA +SHEIRTPMNG+LGML++++D +L Q+DY+R A +SG
Sbjct: 481 LVQARQEALQSTQAKSEFLANMSHEIRTPMNGILGMLELVLDADLPPEQKDYIRIANSSG 540
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
+ L++L+N +LD +KVE+GK+ELE + FNLR L++ LF+ ++Q KG+E+A I D V
Sbjct: 541 QTLLALLNSILDLSKVEAGKMELEHLDFNLRETLEETTKLFAPQAQGKGLEIAALIDDSV 600
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
PE GDP R RQ+ITNL+GN+IKFT++G I + + +E
Sbjct: 601 PEYANGDPTRLRQVITNLLGNAIKFTDQGEITLAADVTQE-------------------- 640
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
AD+ SW+ L + + DTG GI +AQ RIF F Q
Sbjct: 641 ---ADQ--SWR-----------------------LHIGIRDTGIGIAADAQERIFEGFTQ 672
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
S +R +GGTG+GL++S+ + RM G+I S + GSTF FTA + E +
Sbjct: 673 ADGSTTRRYGGTGLGLTLSRRIATRMGGQIWLESTLDQGSTFHFTARL----KPAKEPEA 728
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL----GIQVEVVSDQLQCLSQI 778
+ N+ + +G++AL+VD + +R +QR GI + + L+++
Sbjct: 729 LFIPNE------DLRGLRALIVDDK----VTNRVILQRFCDAWGIYHQSADSGVNALAKL 778
Query: 779 ---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 835
A K + +L + + + D ++ +LG LL S +
Sbjct: 779 ELAAEQGKAFDCVLSDMMMPDMDGVEVARQIHANAQLG----DLKLLLITSYTGRGLRDK 834
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAM--------GVGNKGNIRNWELPSMSLRHLLLGR 887
++ KP+ L +L++ + G + + P G
Sbjct: 835 ARLAGFDRLLPKPIGRRELHDALEQVLLGPAQTPASAPASGALEHSATPG--------GL 886
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
+IL+ +DN VN +VA+ L+++G VV + G +A E FD MD QMP MDG
Sbjct: 887 RILLAEDNQVNRQVASTHLEKFGCTVVSAKNGAEALERFC-QQPFDLVLMDCQMPVMDGL 945
Query: 948 E 948
E
Sbjct: 946 E 946
>gi|108805455|ref|YP_645392.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
gi|108766698|gb|ABG05580.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
Length = 1369
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 186/616 (30%), Positives = 298/616 (48%), Gaps = 100/616 (16%)
Query: 384 WPLLAISTSIG-----ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKS 438
W LL++S G + VIA + + ++EE+ + E K++AEAA AKS
Sbjct: 584 WVLLSVSLVTGENDEPLYVIAQV------QDITERKRIEEE---LREAKEQAEAASRAKS 634
Query: 439 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKV 498
+F+A +SHEIRTPMNGV+GM ++L+DT L Q++Y RT ++SG+AL++++N++LD +K+
Sbjct: 635 EFVANMSHEIRTPMNGVIGMAELLLDTPLTPEQREYARTIRSSGEALLAILNDILDFSKI 694
Query: 499 ESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIIT 558
E+G+L LE + F + +++V+SL + ++ KG+EL +I VP + GDP R RQ++T
Sbjct: 695 EAGRLSLERIPFEIHKEVEEVVSLLAPRAHAKGLELICFIEPGVPPLIKGDPFRLRQVLT 754
Query: 559 NLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTF 618
NL+GN+IKFTE+G + V+ L S + P +R
Sbjct: 755 NLIGNAIKFTEEGEVVVSASL---------------SKEEKKKSAPAGERGGE------- 792
Query: 619 NQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGL 678
I L V+D+G GI E Q +F F Q S +R +GGTG+GL
Sbjct: 793 ----------------IELRFEVKDSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGLGL 836
Query: 679 SISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF-------GNGSSTSNEHNS-----QQMN 726
+IS+ LV M GEIG S P GSTF F+A F T E +
Sbjct: 837 AISRQLVEMMGGEIGLKSSPKEGSTFHFSARFVLPEEEEEKSPKTPPEEGEGGGARRTRE 896
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVS-------RYHIQRLGIQVEVVSDQLQCLSQIA 779
+ G++ LVVD + R + +G E + + + +A
Sbjct: 897 EEERGRRESLAGLRVLVVDDNATNRTILCRQLEAWRMEPKSVGGAQEAIRELEASGTFLA 956
Query: 780 SGSKIINMILVEQEVWEKD-----TSVSTLFVNNLRKLGCGFQS-KLFLLANSISSSRAN 833
S S ++++++ ++ E D + + K G F + +L LL + ++
Sbjct: 957 SSSSGYDLVILDMQMPETDGLELARRIKSRLQEEEEKRGGAFSALRLMLLTSMDPQTKEK 1016
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK---IL 890
G ++ + + KP+R S L ++ + K R LP+ G++ IL
Sbjct: 1017 IKASG-TVEACLQKPVRQSQLYDAIA-TLFQKKKEEERPLPLPAHQKEEEKEGKERPLIL 1074
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM------------------PPHQF 932
+ +DN VN +VAA+ LK+ G V + G++A + L P ++
Sbjct: 1075 LAEDNPVNQQVAASMLKKLGYRVELAQNGEEALKKLFPPPSSPPSSSGREEGGGSPKKKY 1134
Query: 933 DACFMDIQMPEMDGYE 948
A MDIQMP+MDG E
Sbjct: 1135 AAVLMDIQMPKMDGLE 1150
>gi|300856171|ref|YP_003781155.1| sensor histidine kinase/response regulator hybrid [Clostridium
ljungdahlii DSM 13528]
gi|300436286|gb|ADK16053.1| putative sensor histidine kinase/response regulator hybrid
[Clostridium ljungdahlii DSM 13528]
Length = 949
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 175/546 (32%), Positives = 268/546 (49%), Gaps = 75/546 (13%)
Query: 409 TVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD 468
T R+A+ E + + K++AEAA++AKSQFLA +SHEIRTPMNG+ G LD+L T L
Sbjct: 304 TEQRLAERE-----LYKAKEQAEAANIAKSQFLANMSHEIRTPMNGIFGFLDLLQSTNLS 358
Query: 469 VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQ 528
+ Q+D++R A+++ K L+ +IN++LD +K+E+ KL +E + FNLR ++D +SL K+
Sbjct: 359 LEQKDFIREAKSASKVLLYIINDILDFSKIEAKKLTMEKIRFNLRNTIEDAVSLLVPKAV 418
Query: 529 DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 588
+KG+EL IS+ VPE ++GDP R RQI+ NL+ N++KFT KG I VTV ++E E
Sbjct: 419 EKGLELYTMISEGVPEEVVGDPSRLRQILNNLISNAVKFTNKGEISVTVDCLKE-----E 473
Query: 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 648
ET + L V+DTG GI
Sbjct: 474 NETAV-------------------------------------------LNFEVKDTGIGI 490
Query: 649 PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708
+ IF F Q S +R +GGTG+GL+IS LV M GEI SI GS F F
Sbjct: 491 RKDHIDNIFKSFSQADTSTTRKYGGTGLGLAISSELVKMMGGEIHVESIFGKGSIFKFDV 550
Query: 709 VFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
S + + + + GM L+V+ K+ ++Q G++V
Sbjct: 551 RLKIVKRASGQKFAFE----------KLDGMNILIVNDDVNNRKIINSYLQETGLKVSEA 600
Query: 769 SDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS 828
+ ++ I S + N I + ++ + N L+ + KL LL +
Sbjct: 601 ENGSSAITTILSNASTKNKINIAIMDYQMNDMSGYELANTLKTIPFAKNIKLILLTSITQ 660
Query: 829 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL---- 884
A T + S + KP+R L A + +G+ + N E + +H++
Sbjct: 661 KGNAETVKE-YGFSSYLSKPVRRDDLLACIAMVLGLKKE----NGEGHQVITKHIVKEVK 715
Query: 885 --LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
L +IL+V+DN +N K+ LK + G +A + ++ +D FMD QMP
Sbjct: 716 NALEPRILLVEDNKMNRKIVITMLKSHDMTCDVAVDGSEALKAVLQK-DYDVVFMDCQMP 774
Query: 943 EMDGYE 948
MDGYE
Sbjct: 775 VMDGYE 780
>gi|218779594|ref|YP_002430912.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
gi|218760978|gb|ACL03444.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
Length = 1102
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 174/541 (32%), Positives = 272/541 (50%), Gaps = 72/541 (13%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
++E G +L +AE A++AK FLA +SHEIRTPMNGV+GM ++LM+T L+ Q +Y
Sbjct: 407 QLENLVEGANQLAVEAELANMAKGVFLANMSHEIRTPMNGVIGMGELLMETRLNSEQTEY 466
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
V +S +AL+ +IN++LD +K+++ KL+LE + FNLR ++ V + S +++KGVE
Sbjct: 467 VERINSSAQALLRVINDILDYSKIDADKLDLEVIEFNLRNTVEGVADVISVPAEEKGVEA 526
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
A I VP L GDPGR RQI+ NL GN++KFTEKG + + V L DS + ET +
Sbjct: 527 ACLIHHDVPLWLKGDPGRLRQILMNLSGNAVKFTEKGEVVIRVSL-----DSEDEETAV- 580
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
+ V D+G GIP + Q
Sbjct: 581 ------------------------------------------IRFEVRDSGIGIPPDVQK 598
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
+FTPF Q S +R HGGTG+GL+ISK L M GEIG S GSTF FTAV
Sbjct: 599 TLFTPFTQADSSTTRKHGGTGLGLAISKKLSELMGGEIGLTSEEGKGSTFWFTAVLPKSR 658
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 774
E S + + QG + LVVD + R ++ + E Q
Sbjct: 659 KAPREELSVK----------DLQGKRVLVVDDVETNRIILREMLRGWKSRPEEAPGGEQA 708
Query: 775 LS---QIASGSKIINMILVEQEVWEKD-TSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
L+ + + + ++ +++ ++ + D ++ + +++ R F++ ++ S+
Sbjct: 709 LAWLDKAYAENDPFDLAILDMQMPDMDGAALGSRILDDPR-----FKNITLVMLTSMGMR 763
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN---KGNIRNWELPSMSLRHLLLGR 887
+ + + + + KP++ + L +L MG + G R+ P S +
Sbjct: 764 GDAQAMEKLGFHAYLTKPIKQAQLFDALSCTMGACSGEEAGGARSIVTPYTSEETQKI-- 821
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
IL+ DDN++N KVA+ L + G +VV GK+A + ++ Q+D MD QMP MDG
Sbjct: 822 HILLADDNDINQKVASTNLIKMGHSVVVANNGKEALDAIVKGEQYDLILMDGQMPIMDGM 881
Query: 948 E 948
E
Sbjct: 882 E 882
>gi|259156567|gb|ACV96510.1| multi-sensor hybrid histidine kinase [Vibrio fluvialis Ind1]
Length = 1252
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 180/552 (32%), Positives = 285/552 (51%), Gaps = 77/552 (13%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ + K++AE+A+ AKS+FLA +SHEIRTPMNGVLG+L ++ ++ LD Q DY+ A ++
Sbjct: 507 LAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANSTLDQRQADYIEKAYSAA 566
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
K+L++L+N++LD +K+E+GKLEL+ F+L +L D+ +FS ++ KG+E+ ++ V
Sbjct: 567 KSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLVFSSSAEQKGLEVLYDVTADV 626
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
PE L+GD R +Q++ NL+GN+IKFT+KG I +++
Sbjct: 627 PEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISI------------------------- 661
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
R S +G INL S++DTG GI LE Q+ +F+ F Q
Sbjct: 662 -----RSQSLP-------EGE-----------INLSFSIKDTGIGITLEQQNALFSGFQQ 698
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
SISR +GGTG+GL+ISK LV M GEIG S GSTF+F V N + +
Sbjct: 699 ADSSISRRYGGTGLGLAISKRLVNLMGGEIGVESEFGCGSTFSFNVVVRNAEKRAIQ--- 755
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC---LSQIA 779
N+Q + S+E + L+VD + + LG Q ++ SD + + Q
Sbjct: 756 ---NSQTFTRSNE--KLSVLIVDDNDSARIILQGIAVSLGWQAKIASDAQEASLLVKQAH 810
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
S +++ V+ W F LR+L S + ++ + D
Sbjct: 811 RDSTRYDVVFVD---WRMPGKDGLTFARELRELHSSVVSLIVMITAHGKELLDEQNNDYE 867
Query: 840 S-IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNN 896
+ ++KP+ +M+ +++ + G++ + LP+ L H L G +L+V+DN
Sbjct: 868 RYLDGFLIKPVTKNMMLQAVESVVF----GDL-DLSLPTSPLPHELPLQGISLLLVEDNL 922
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPHQFDACFMDIQMPEMDGYEM------ 949
N VA+ L++ GA + G++A E+L FD MDIQMP MDGY+
Sbjct: 923 TNQLVASELLQQLGATIKIASSGEEALEMLESTAEHFDMVLMDIQMPGMDGYQTTREIRK 982
Query: 950 LPCFESFLLIAI 961
LP + +IAI
Sbjct: 983 LPRHQLLPIIAI 994
>gi|343516482|ref|ZP_08753517.1| PAS domain protein [Vibrio sp. N418]
gi|342796067|gb|EGU31762.1| PAS domain protein [Vibrio sp. N418]
Length = 1814
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 179/566 (31%), Positives = 269/566 (47%), Gaps = 85/566 (15%)
Query: 399 ASLVG-HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
A L G +F V + +E +M K+KAE A AKS FLA +SHEIRTPMN ++G
Sbjct: 954 AGLTGEQLFTGIVRDATERKEAERELMLAKQKAEEATQAKSDFLANMSHEIRTPMNAIIG 1013
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
M + M T+L+ Q DYV Q S ++L+ +IN++LD +K+E+GKL+LE F+L + +D
Sbjct: 1014 MSYLAMQTDLNKKQSDYVNKIQTSAESLLGIINDILDFSKIEAGKLDLEQTEFDLESTID 1073
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
+++ + S ++Q+K +EL V + ++P LIGDP R QI+ NL N+IKFT++G I V
Sbjct: 1074 NLVQVVSQRTQEKDLELLVDLDPQLPTHLIGDPLRLGQILLNLANNAIKFTDQGEIIVKA 1133
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 637
L+E+ D +E +S
Sbjct: 1134 ELIEQSDDKLEARFSVS------------------------------------------- 1150
Query: 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697
DTG G+ E +R+F F Q S +R +GGTG+GL+ISK L M+G I S
Sbjct: 1151 -----DTGIGMTEEQMARLFQSFSQADASTTRKYGGTGLGLTISKTLAEMMEGSIWVESE 1205
Query: 698 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 757
GSTF FTA FG S ++ QP + + L+VD ++
Sbjct: 1206 SGQGSTFFFTAQFGLSS---------EIPQQPVLAPESMKEVSILIVDDSVAAREILFSL 1256
Query: 758 IQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817
Q L +V S + L +I E D +S + + + G Q
Sbjct: 1257 CQSLKFNADVASSGAEALEKIRHA---------ENNEQHFDVILSDWKMPQMDGIALGQQ 1307
Query: 818 SKL------------FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM--- 862
+L F++ + + GV+I + + KP+ SS L +L R M
Sbjct: 1308 IELIHQSKEIATLPHFVMVTAYDKDDMLANRQGVNIVASMTKPVSSSTLLDTLSRVMTKE 1367
Query: 863 GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA 922
G+ NK N N S+ + G +IL+V+DN +N ++A L+ G V G++A
Sbjct: 1368 GITNKTNTSNK--LDTSIAQGIAGARILLVEDNAINQEIATELLQMVGMDVTTANNGQEA 1425
Query: 923 TELLMPPHQFDACFMDIQMPEMDGYE 948
+L+ FD MDIQMP MDGY+
Sbjct: 1426 VDLV-GSQDFDLVLMDIQMPVMDGYQ 1450
>gi|254411816|ref|ZP_05025592.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196181538|gb|EDX76526.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1478
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 170/523 (32%), Positives = 267/523 (51%), Gaps = 67/523 (12%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
K+QFLA +SHEIRTPMNGVLGM ++L+ T+L+ Q D+V+T Q SG+ L+ +IN++LD +
Sbjct: 529 KAQFLANMSHEIRTPMNGVLGMSELLLTTDLNPRQLDFVKTLQVSGEHLLGVINDILDFS 588
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+G++ L+ N+ L+DVL L S +++ K +ELA+ + VP L+GD GR RQI
Sbjct: 589 KLEAGEMRLDVDELNINRSLEDVLDLCSPQAEAKDLELALLVDTDVPRRLMGDVGRLRQI 648
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
TNL+ NSIKFTE G + + V + +E+
Sbjct: 649 CTNLVSNSIKFTESGEVVIRVSVHQEL--------------------------------- 675
Query: 617 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
D + L +V DTG GI E +S++F F QV S +R +GGTG+
Sbjct: 676 -------------EEQDKLQLRFAVRDTGIGINPEDKSKLFQAFSQVDSSTTRKYGGTGL 722
Query: 677 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM-NNQPNSVSSE 735
GL+I K LV M GEIG S +GSTF FT FG + E+ S ++ +N P S S
Sbjct: 723 GLAICKQLVEMMGGEIGVESQLGVGSTFWFTITFGKVPVGTEENESDRIFSNLPISPES- 781
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKIINMILVEQ 792
QG + L+VD RPI ++ +Y ++ G++V+ + L + A K ++ L++
Sbjct: 782 LQGKRVLIVDDRPINRQIVKYQLEARGMEVDEADNGIIALNAMQASAEAGKPYDVALLDM 841
Query: 793 EVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS 852
++ + D S + L + +L S+ + + ++KP++ S
Sbjct: 842 KMPKIDGST----LGRLILAEPDWAKTKLVLMTSMHAGDSAQPLLKSGFADYLVKPVKES 897
Query: 853 MLAASLQRAMGV-------GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905
L SLQ+ + + I + P+ L KIL+V+D +NLK+
Sbjct: 898 QLLESLQKILAAEIPATLFSTQSAIPDPSQPAPQSTCL----KILLVEDTPINLKLVRHQ 953
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
++ G E G++A + + + +D MD QMP MDGY+
Sbjct: 954 VQLLGHESESAENGQEALDKI-AKNDYDIVLMDCQMPVMDGYQ 995
Score = 43.5 bits (101), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+L+V+D +NLK+ ++ G E G+KA E L + +D MD QMP MDGY+
Sbjct: 1226 LLLVEDTPINLKLVQHQVRLLGHQWDSAENGEKALEKL-AENDYDIVLMDCQMPVMDGYK 1284
>gi|254850977|ref|ZP_05240327.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|440708940|ref|ZP_20889600.1| hypothetical protein VC4260B_03450 [Vibrio cholerae 4260B]
gi|21885294|gb|AAL59700.1| putative histidine kinase [Vibrio cholerae]
gi|254846682|gb|EET25096.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|259156330|gb|ACV96276.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Ind4]
gi|439975681|gb|ELP51793.1| hypothetical protein VC4260B_03450 [Vibrio cholerae 4260B]
Length = 1268
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 179/552 (32%), Positives = 285/552 (51%), Gaps = 77/552 (13%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ + K++AE+A+ AKS+FLA +SHEIRTPMNGVLG+L ++ ++ LD Q DY+ A ++
Sbjct: 523 LAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANSTLDQRQADYIEKAYSAA 582
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
K+L++L+N++LD +K+E+GKLEL+ F+L ++ D+ +FS ++ KG+E+ ++ V
Sbjct: 583 KSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLMQDIGLVFSSSAEQKGLEVLYDVTADV 642
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
PE L+GD R +Q++ NL+GN+IKFT+KG I +++
Sbjct: 643 PEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISI------------------------- 677
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
R S +G INL S++DTG GI LE Q+ +F+ F Q
Sbjct: 678 -----RSQSLP-------EGE-----------INLSFSIKDTGIGITLEQQNALFSGFQQ 714
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
SISR +GGTG+GL+ISK LV M GEIG S GSTF+F V N + +
Sbjct: 715 ADSSISRRYGGTGLGLAISKRLVNLMGGEIGVESEFGCGSTFSFNVVVRNAEKRAIQ--- 771
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC---LSQIA 779
N+Q + S+E + L+VD + + LG Q ++ SD + + Q
Sbjct: 772 ---NSQTFTRSNE--KLSVLIVDDNDSSRIILQGIAVSLGWQAKIASDAQEASLLVKQAH 826
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
S +++ V+ W F LR+L S + ++ + D
Sbjct: 827 RDSTRYDVVFVD---WRMPGKDGLTFARELRELHSSVVSLIVMITAHGKELLDEQNNDYE 883
Query: 840 S-IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNN 896
+ ++KP+ +M+ +++ + G++ + LP+ L H L G +L+V+DN
Sbjct: 884 RYLDGFLIKPVTKNMMLQAVKSVVF----GDL-DLSLPTSPLPHELPLQGISLLLVEDNL 938
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPHQFDACFMDIQMPEMDGYEM------ 949
N VA+ L++ GA + G++A E+L FD MDIQMP MDGY+
Sbjct: 939 TNQLVASELLQQLGATIKIASSGEEALEMLESTAEHFDMVLMDIQMPGMDGYQTTREIRK 998
Query: 950 LPCFESFLLIAI 961
LP + +IAI
Sbjct: 999 LPRHQLLPIIAI 1010
>gi|298527923|ref|ZP_07015327.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511575|gb|EFI35477.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1346
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 190/615 (30%), Positives = 293/615 (47%), Gaps = 85/615 (13%)
Query: 360 VSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIAS-------------LVGHIF 406
VS L+ DPFR H + PL+ +G + + S L +
Sbjct: 541 VSKLDNNDPFRLHLEFQDIQSLLAIPLMGPEGCLGFVGLDSVRSTRTWSDSEINLFALLA 600
Query: 407 QATVNRIAKV--EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 464
+ VN + E+D ME +AE A AKS+FLA +SHEIRTPMNGV+GM D+L+D
Sbjct: 601 KLLVNAQLRQSREQDLKDAME---QAEIATQAKSEFLANMSHEIRTPMNGVIGMTDLLLD 657
Query: 465 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 524
TEL Q+ + Q+SG+AL++LIN++LD +K+E+G+LELE+V+FNL +L+D+ SL +
Sbjct: 658 TELRPEQRSLAESIQSSGEALLALINDILDFSKIEAGRLELESVNFNLHYLLEDLASLMA 717
Query: 525 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 584
++ +KG+EL VP + GDPGR RQI+TNL+GN+IKFT +G + V V
Sbjct: 718 VRADEKGLELICLPDPDVPAQVQGDPGRLRQILTNLVGNAIKFTHQGEVVVMVQ------ 771
Query: 585 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644
++E S K+ +SAD + L+ +V+DT
Sbjct: 772 -----KSEARSQKS------------------------------DNSADDVLLLFTVQDT 796
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G G+P + +F F QV S +R GGTG+GL+IS+ L M GE+G S G F
Sbjct: 797 GIGVPEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAEMMGGEVGVQSEYGRGCKF 856
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQP-NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 763
FTA Q+ +P ++ + G L+VD ++ + ++ G+
Sbjct: 857 WFTARL----------TLQKKQEEPLPALPQDLHGEHILIVDDNETNLEILKKQLEAWGV 906
Query: 764 QVEVVS---DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 820
+VE S + L L ++ S M +++ + D + + N L +
Sbjct: 907 EVEQASEGHEALLILDRVYSEGNYFAMAILDMHMPGMDGAELGRLIRNTDIL----KDLP 962
Query: 821 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG-------NIRNW 873
++ S+ + + + KP+R S L +L + K +
Sbjct: 963 LVMLTSLGRPGDAKIFEEQGFNAYLNKPVRQSELFDTLLTVLSSAGKAPGHSIITRHQAR 1022
Query: 874 ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 933
E+ + +L+ +DN VN KVA L + G + V+ G KA E L +D
Sbjct: 1023 EIKRQQSELIKFKGHVLVAEDNPVNQKVAVGLLNKMGLSADIVDTGLKAVEALQ-NQSYD 1081
Query: 934 ACFMDIQMPEMDGYE 948
MD+QMPEMDG E
Sbjct: 1082 LVLMDVQMPEMDGLE 1096
Score = 43.9 bits (102), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 871 RNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL---- 926
+ E P +L L G ILIVDDN NL++ L+ +G V G +A +L
Sbjct: 866 KKQEEPLPALPQDLHGEHILIVDDNETNLEILKKQLEAWGVEVEQASEGHEALLILDRVY 925
Query: 927 MPPHQFDACFMDIQMPEMDGYEM 949
+ F +D+ MP MDG E+
Sbjct: 926 SEGNYFAMAILDMHMPGMDGAEL 948
>gi|224371381|ref|YP_002605545.1| sensory box histidine kinase/response regulator [Desulfobacterium
autotrophicum HRM2]
gi|223694098|gb|ACN17381.1| sensory box histidine kinase/response regulator [Desulfobacterium
autotrophicum HRM2]
Length = 967
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 170/538 (31%), Positives = 276/538 (51%), Gaps = 73/538 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AE A AKSQFLA +SHEIRTPMNGVLGM ++LM+T+L Q+ + +T Q+SG +L+
Sbjct: 295 KETAEEASRAKSQFLANMSHEIRTPMNGVLGMAELLMETDLTEEQRRFSKTIQSSGSSLL 354
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+GKLELE ++FNL+ ++DDV+ + + ++ K +ELAV I PET
Sbjct: 355 AIINDILDFSKIEAGKLELETINFNLQILIDDVMQMLASRAHAKQLELAVLIP---PETC 411
Query: 547 I---GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGY 603
I GDP RFRQ++TNL+GN+IKFT++G + V V
Sbjct: 412 IFLRGDPTRFRQVLTNLVGNAIKFTKQGEVVVQV------------------------AT 447
Query: 604 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663
V+D+ + + L V + DTG GI + R+F+PF Q
Sbjct: 448 TVSDQ------------------------NRVKLHVLIRDTGIGISQQDLQRLFSPFSQA 483
Query: 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ 723
S +R +GGTG+GL+ISK +V M G++ S P GSTF+FT F +S E N
Sbjct: 484 DGSTTRKYGGTGLGLAISKEIVALMGGDLHCESEPGKGSTFSFTVDF--AASLETEKNRS 541
Query: 724 QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSDQLQCLSQIAS 780
++N ++ +G + LV+D ++ + G++ + + ++ L
Sbjct: 542 RLN------TANLKGHRVLVIDDNLTNREILKRQTSSWGMKPKSSDCGAKGIEELHLAQQ 595
Query: 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
+ +++L+++++ D L V K ++ S+ +
Sbjct: 596 KGEPFDLVLLDKDMPGMD----GLEVAQQIKADSAIADTRLIMLTSVGAGNDAAQAKRNG 651
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH--LLLGRKILIVDDNNVN 898
I + + KP+ + L A++ + +G K N + + S + L +L+ +DN N
Sbjct: 652 ISAYLNKPVPQADLHAAVIQIIGDHPK-NRSDHMIDSTGIDQDKQLFNIHVLVAEDNLTN 710
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF 956
VAAA L+ +G V V G++A + + +D FMD QMP +DGY+ F
Sbjct: 711 QNVAAAMLRLFGCRVDIVSNGREAVDAI-SKKSYDLVFMDCQMPVLDGYQATAAIRQF 767
>gi|108804107|ref|YP_644044.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
gi|108765350|gb|ABG04232.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
9941]
Length = 1069
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 179/580 (30%), Positives = 287/580 (49%), Gaps = 91/580 (15%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
++EE+ + E K++AEAA AKS+F+A +SHEIRTPMNGV+GM ++L+DT L Q++Y
Sbjct: 310 RIEEE---LREAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELLLDTPLTPEQREY 366
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
RT ++SG+AL++++N++LD +K+E+G+L LE + F + +++V+SL + ++ KG+EL
Sbjct: 367 ARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRAHAKGLEL 426
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+I VP + GDP R RQ++TNL+GN+IKFTE+G + V+V L +E +
Sbjct: 427 ICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEEGEVVVSVSLSKEEKSA-------- 478
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
P +R I L V+D+G GI E Q
Sbjct: 479 ---------PAGERGGE-----------------------IELRFEVKDSGIGIQEEQQK 506
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF---- 710
+F F Q S +R +GGTG+GL+IS+ LV M GEIG S P GSTF F+A F
Sbjct: 507 HLFEAFSQADASTTRRYGGTGLGLAISRQLVEMMGGEIGLKSSPKEGSTFHFSARFVLPE 566
Query: 711 ---GNGSSTSNEHNS-----QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS-------R 755
T E + + G++ LVVD + R
Sbjct: 567 EEEEKSPKTPPEEGEGGGARRTREEEERGRRESLAGLRVLVVDDNATNRTILCRQLEAWR 626
Query: 756 YHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKD-----TSVSTLFVNNLR 810
+ +G E + + + +AS S ++++++ ++ E D + +
Sbjct: 627 MEPKSVGGAQEAIRELEASGTFLASSSSGYDLVILDMQMPETDGLELARRIKSRLQEEEE 686
Query: 811 KLGCGFQS-KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGN 869
K G F + +L LL + ++ G ++ + + KP+R S L ++ + K
Sbjct: 687 KRGGAFSALRLMLLTSMDPQTKEKIKASG-TVEACLQKPVRQSQLYDAIA-TLFQKKKEE 744
Query: 870 IRNWELPSMSLRHLLLGRK---ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 926
R LP+ G++ IL+ +DN VN +VAA+ LK+ G V + G++A + L
Sbjct: 745 ERPLPLPAHQKEEEKEGKERPLILLAEDNPVNQQVAASMLKKLGYRVELAQNGEEALKKL 804
Query: 927 M------------------PPHQFDACFMDIQMPEMDGYE 948
P ++ A MDIQMP+MDG E
Sbjct: 805 FPPPSSPPSSSGREEGGGSPKKKYAAVLMDIQMPKMDGLE 844
>gi|343511277|ref|ZP_08748451.1| PAS domain-containing protein [Vibrio scophthalmi LMG 19158]
gi|342798610|gb|EGU34209.1| PAS domain-containing protein [Vibrio scophthalmi LMG 19158]
Length = 1816
Score = 249 bits (636), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 176/560 (31%), Positives = 267/560 (47%), Gaps = 84/560 (15%)
Query: 404 HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM 463
+F V + +E +M K+KAE A AKS FLA +SHEIRTPMN ++GM + M
Sbjct: 960 QLFTGIVRDATERKEAERELMLAKQKAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLAM 1019
Query: 464 DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 523
T+L+ Q DYV Q S ++L+ +IN++LD +K+E+GKL+LE F+L + +D+++ +
Sbjct: 1020 QTDLNKKQADYVNKIQTSAESLLGIINDILDFSKIEAGKLDLEQTEFDLESTIDNLVQVV 1079
Query: 524 SGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 583
S ++Q+K +EL V + ++P LIGDP R QI+ NL N+IKFT++G I V L+E+
Sbjct: 1080 SQRTQEKDLELLVDLDPQLPTHLIGDPLRLGQILLNLANNAIKFTDQGEIIVKAELIEQS 1139
Query: 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 643
D +E + V+D
Sbjct: 1140 DDKLEAR------------FSVSD------------------------------------ 1151
Query: 644 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 703
TG G+ E +R+F F Q S +R +GGTG+GL+ISK L M+G I S GST
Sbjct: 1152 TGIGMTKEQMARLFQSFSQADASTTRKYGGTGLGLTISKTLAEMMEGSIWVESESGQGST 1211
Query: 704 FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 763
F FTA FG S ++ QP + + L+VD ++ Q L
Sbjct: 1212 FFFTAQFGLSS---------EIPQQPVLAPESMKEVSVLIVDDSVAAREILFSLCQSLKF 1262
Query: 764 QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL--- 820
+V S + L +I E D +S + + + G Q +L
Sbjct: 1263 NADVASSGAEALEKIRHA---------ENNEQHFDVILSDWKMPQMDGIALGQQIELMHQ 1313
Query: 821 ---------FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM---GVGNKG 868
F++ + + GV+I + + KP+ SS L +L R M G+ NK
Sbjct: 1314 SKEIATLPHFVMVTAYDKDDMLANRQGVNIVASMTKPVSSSTLLDTLSRVMTKEGITNKT 1373
Query: 869 NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 928
N N S+ + G +IL+V+DN +N ++A L+ G V G++A +L+
Sbjct: 1374 NTSNK--LDTSIAQGIAGARILLVEDNAINQEIATELLQMVGMDVTTANNGQEAVDLV-G 1430
Query: 929 PHQFDACFMDIQMPEMDGYE 948
FD MDIQMP MDGY+
Sbjct: 1431 SQDFDLVLMDIQMPVMDGYQ 1450
>gi|302035961|ref|YP_003796283.1| putative histidine kinase [Candidatus Nitrospira defluvii]
gi|300604025|emb|CBK40357.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
Length = 954
Score = 249 bits (636), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 172/571 (30%), Positives = 279/571 (48%), Gaps = 72/571 (12%)
Query: 389 ISTSIGILVIASLVG-HIFQATVNRIAKVEEDYH----GMMELKKKAEAADVAKSQFLAT 443
I T G L +AS+V + + T + ++K +D + E + +A A AK+ FLAT
Sbjct: 366 IDTPNGKLALASIVDITMRKRTESALSKAAQDLEWKNWEISEARDQAVKAGQAKTDFLAT 425
Query: 444 VSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKL 503
+SHEIRTPMNGVLGM +L+DT L Q+DY++T + S ++L+ +IN++LD +K+E+GK
Sbjct: 426 MSHEIRTPMNGVLGMTTLLLDTALSTEQRDYLQTLRHSSESLLRIINDILDFSKIEAGKF 485
Query: 504 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGN 563
+E + F+LR ++D L + + SQD+ +EL I + P T+IGDPGR RQ++TNL+GN
Sbjct: 486 TIEQIPFDLRMTIEDTLDMLAPASQDRHLELVGLIDAQTPRTVIGDPGRIRQVLTNLLGN 545
Query: 564 SIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 623
+IKFTE+G + + V ++E
Sbjct: 546 AIKFTEQGEVLIQVLPLDE----------------------------------------- 564
Query: 624 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKY 683
+ L V DTG G+ EAQ+++F F Q S +R +GGTG+GL+I K
Sbjct: 565 -------DPTFVMLRFEVIDTGIGLSPEAQAKMFQAFTQADSSTARKYGGTGLGLTICKR 617
Query: 684 LVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALV 743
LV M GEIG S+P +G+ FT F + + P S++F G + +
Sbjct: 618 LVELMGGEIGLQSMPGLGTRIWFTVRFALQADAAPP-------VMPPLTSNDFAGRRVCL 670
Query: 744 VDPRPIRAKVSRYHIQRLGIQ----VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDT 799
VD P + +YH+ + V+ S A G+ ++ +++ + +
Sbjct: 671 VDDNPTNRSLLQYHVSGWNMHHESAVDAPSALALLRQAAADGTP-FDLAIIDIHMPD--- 726
Query: 800 SVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQ 859
+ L + L K ++ ++ + + + + + KP+R LA ++
Sbjct: 727 -IGGLQLCRLIKEDPAIRATHLIVLTAFGQRGDSIAAKEAGASAYLPKPVRERQLADCIR 785
Query: 860 RAMGVGNKGNIRNWELP--SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVE 917
+G + + +MS +++L+VDDN VN KVA L++ G V
Sbjct: 786 LILGRKDSDETSTPLITRHTMSEAQAQAAQRLLVVDDNPVNQKVALKMLEKLGYRVDVAG 845
Query: 918 RGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G +A + HQ+ FMD QMPE+DG E
Sbjct: 846 NGMEALAAVC-RHQYPLVFMDCQMPELDGLE 875
>gi|344940937|ref|ZP_08780225.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
gi|344262129|gb|EGW22400.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
Length = 966
Score = 249 bits (636), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 170/552 (30%), Positives = 278/552 (50%), Gaps = 74/552 (13%)
Query: 407 QATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE 466
Q +NR ++ + E + +A AAD +KS+FL+ +SHEIRTPMN ++GM + + T+
Sbjct: 279 QKVINRTSE-------LAEARDQAIAADKSKSEFLSMMSHEIRTPMNAIIGMTRLALQTD 331
Query: 467 LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGK 526
L QQDY+ Q S +AL+ +IN++LD +K+E+GKLELE ++FNL +L+D+ SL SGK
Sbjct: 332 LTAKQQDYLTKVQISSRALLGIINDILDFSKIEAGKLELETIAFNLDDVLNDLFSLMSGK 391
Query: 527 SQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 586
+++KG+++ +D VP LIGDP R Q++ NL+ N++KFT +G
Sbjct: 392 AEEKGLKIRFITADDVPSDLIGDPLRLGQVLLNLVNNAVKFTSRG-------------GD 438
Query: 587 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 646
++++ L+ + SAD I L SV+DTG
Sbjct: 439 VDIKVALAEGAEQV-----------------------------KSADQIRLEFSVKDTGI 469
Query: 647 GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 706
G+ E +F F Q S +R +GGTG+GL+I K +V M G I S GSTF F
Sbjct: 470 GLTTEQIGGLFQSFNQADKSTTRKYGGTGLGLAICKRMVDMMGGVITVNSEIGQGSTFIF 529
Query: 707 TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 766
TA+F S ++++ F+G+KALVVD H++ L QV
Sbjct: 530 TAIFEQPYEVSQKYSASH---------DAFRGVKALVVDSDETSRNALCLHLKSLFFQVT 580
Query: 767 VVSDQLQCLSQI--ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLA 824
VS Q + + A ++L++ + + D + N ++ C + +
Sbjct: 581 SVSTGEQAIQLLENACAEDPYRLVLMDWNLPKMDGISVARHIKNSLEIAC-IPHIIIVTT 639
Query: 825 NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR--- 881
+S + +++ + KP+ +S L +++ A N+ + + PS R
Sbjct: 640 HSREDVVHVQRSKDLNLDGFLAKPVHASALFSAVVEAF---NQTDFDEYP-PSQVRRPGT 695
Query: 882 -----HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACF 936
H + G K+L+V+DN++N ++A L++ G V G+ A + + + FDA
Sbjct: 696 GNEKLHQIKGAKLLLVEDNHINQQIAKETLEQEGFEVSIASDGRDAVQKIRTCY-FDAVL 754
Query: 937 MDIQMPEMDGYE 948
MD++MP MDGYE
Sbjct: 755 MDLEMPIMDGYE 766
>gi|359413616|ref|ZP_09206081.1| multi-sensor hybrid histidine kinase [Clostridium sp. DL-VIII]
gi|357172500|gb|EHJ00675.1| multi-sensor hybrid histidine kinase [Clostridium sp. DL-VIII]
Length = 940
Score = 249 bits (635), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 169/556 (30%), Positives = 276/556 (49%), Gaps = 93/556 (16%)
Query: 409 TVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD 468
T N I + + + + K++AEAA++AKSQF+A +SHEIRTPMNG+ G L++L T+L
Sbjct: 294 TANDITEQRKAETELYKAKEQAEAANIAKSQFIANMSHEIRTPMNGIFGFLELLQSTDLS 353
Query: 469 VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQ 528
Q++++R A+++ L+ ++N++LD +K+E+ KL +E + FNLR ++D +SL + K+
Sbjct: 354 TEQREFIREAKSASDILLDIVNDILDFSKIEAKKLTMENIKFNLRTTIEDAVSLIAPKAA 413
Query: 529 DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 588
KG+EL I VPE +IGDP R RQI+ NL+ N++KFT +G I V+V +EE
Sbjct: 414 TKGIELYAMIKSGVPEEVIGDPSRLRQILNNLISNAVKFTTEGEISVSVSYLEE------ 467
Query: 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 648
E E++ L+N V+DTG GI
Sbjct: 468 -ENEMA---------------------------------------LLNF--EVKDTGIGI 485
Query: 649 PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708
E ++IF F Q S +R +GGTG+GL+I LV M GEI S+ GSTF F
Sbjct: 486 RKEDINKIFKSFSQADASTTRKYGGTGLGLAICNELVKMMGGEIWAQSVFGEGSTFKFNV 545
Query: 709 VFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI---QV 765
+ N Q+ + + +F+ + L+VD + H+++ G+ Q
Sbjct: 546 RL----KIAKRANKQKFDFE------KFKNINVLIVDDNENNRNIFSSHLEKTGLNIFQA 595
Query: 766 EVVSDQLQCLSQIASGSKIINMILVEQEV-----WEKDTSVSTL-FVNNLRKLGCGFQSK 819
E + + + A+ IN+ L++ ++ +E T++ T+ F +++
Sbjct: 596 EGATSAITAIISKANTENKINIALIDYQMPGMNGYELATTLRTMPFAKDIQ--------- 646
Query: 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN-------KGNIRN 872
+L S++ S +++ KP++ L + + + +G+ N K NI+N
Sbjct: 647 -LILLTSVTQKVDIKSIKEYGFSTLLAKPVKKDDLLSCIAKTLGLENEEEQAIIKHNIKN 705
Query: 873 WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF 932
+ + L KIL+V+DN VN K+ LK G A + + +
Sbjct: 706 F--------NNALNPKILLVEDNEVNRKIVIRMLKSRNMTCDVAINGSDALDAV-SKKDY 756
Query: 933 DACFMDIQMPEMDGYE 948
D FMD QMP MDGYE
Sbjct: 757 DVVFMDCQMPVMDGYE 772
>gi|182678924|ref|YP_001833070.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182634807|gb|ACB95581.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 816
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 172/536 (32%), Positives = 263/536 (49%), Gaps = 92/536 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K +AE A+VAK +FLA +SHEIRTPMNGV+GM +L TEL V Q++YV S L+
Sbjct: 135 KAEAEQANVAKGEFLANMSHEIRTPMNGVIGMAQLLDGTELSVQQREYVSIILHSADTLM 194
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
LIN+VLD +K+E+GKLELE++ F LR L D L + ++ KG+ELA ++ +P+ L
Sbjct: 195 RLINDVLDFSKIEAGKLELESIPFQLRDTLGDTLHSLAARAAHKGLELAYHVPVEIPDAL 254
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R RQIITNL+GN+IKFTEKG + V V L E +++E E+ +
Sbjct: 255 VGDPTRLRQIITNLVGNAIKFTEKGEVVVDVRLKETTDTDVQLEFEVRDT---------- 304
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
G GI Q ++FT F Q S
Sbjct: 305 --------------------------------------GIGISKNQQEKVFTAFGQADAS 326
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I+ L +M G+I S P +GSTF+F + H +++
Sbjct: 327 TTRRYGGTGLGLTIAAQLAEKMGGKIKLESEPGVGSTFSFAPIL---------HLAREER 377
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS----QIASGS 782
S E +G L+VD ++++ + G+ + S+ + L+ IA G
Sbjct: 378 KVRTLSSDELRGQPVLLVDDNETNRRITQEILVNWGMVPTLASNGAEALAALDRAIAEGV 437
Query: 783 K----IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
++++ + E + +E +R Q+++ +L +S +
Sbjct: 438 PPRLALLDVFMPEMDGFE--------LARRIRTRQELAQTRILML-SSAERTDGEARMHE 488
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVG--------NKGNIRNWELPSMSLRHLLLGRKIL 890
+ I ++MKP++ S L ++ A+GVG R E+P +RH+LL
Sbjct: 489 LGISRLLMKPIKQSDLLNAVTEALGVGLPEPHIPIPSPFTRPGEIP---IRHVLLA---- 541
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+D VN +V A L + G V VE G++A E + FD MD+ MP MDG
Sbjct: 542 --EDGVVNQQVTVALLTKRGHPVEVVENGEEAVEAVQ-RGDFDVVLMDVHMPVMDG 594
Score = 40.4 bits (93), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-------MPPHQFDACF 936
L G+ +L+VDDN N ++ L +G G +A L +PP
Sbjct: 387 LRGQPVLLVDDNETNRRITQEILVNWGMVPTLASNGAEALAALDRAIAEGVPPR---LAL 443
Query: 937 MDIQMPEMDGYEM 949
+D+ MPEMDG+E+
Sbjct: 444 LDVFMPEMDGFEL 456
>gi|410672176|ref|YP_006924547.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
gi|409171304|gb|AFV25179.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
Length = 1772
Score = 248 bits (634), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 171/526 (32%), Positives = 266/526 (50%), Gaps = 71/526 (13%)
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
+AE A AKS+FLA +SHEIRTPMNGV+GM +L+DTEL+ Q+ YV T QASG+AL+ +
Sbjct: 1121 RAEEATKAKSEFLANMSHEIRTPMNGVIGMTGLLLDTELNEEQRHYVETVQASGEALLEI 1180
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
IN++LD +K+E+GKLELE + F+L ++LDD S+ S ++ DKG+E VP + G
Sbjct: 1181 INDILDFSKIEAGKLELEVLDFDLHSLLDDFASMLSIRAHDKGLEFICAAEPAVPAYIRG 1240
Query: 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
D GR +Q++ NL GN++KFT +G + V V ++E ET+ +
Sbjct: 1241 DTGRLQQVLVNLTGNAVKFTHQGEVAVRV--------TLESETDAGAL------------ 1280
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
L SV DTG GIP + +F F QV S +
Sbjct: 1281 ----------------------------LRFSVRDTGIGIPKDKIGSLFGQFYQVDASTT 1312
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 728
R +GGTG+GL+ISK LV M GEIG S GS F FTA F Q ++
Sbjct: 1313 RQYGGTGLGLAISKQLVEMMGGEIGVRSEEGKGSEFWFTAHFA----------KQPDCDR 1362
Query: 729 PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKII 785
+S + Q + LVVD ++ + G + + D LQ L + ++
Sbjct: 1363 KKIMSGDIQSARILVVDDNATNREILINQLSSWGSRAKEAVDGPMALQALYKAYEDNEPF 1422
Query: 786 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 845
+ L++ ++ D + + + KL ++ ++ +S+ A+ + + +
Sbjct: 1423 QVALLDMQMPGMDGATLARIIKSDEKL----KNTHLIMLSSMGQWSASQQLEKSYFEAYL 1478
Query: 846 MKPLRSSMLAASLQRAMGVGNKGNIRNWELP-SMSLRHLLLGRKILIVDDNNVNLKVAAA 904
KP+R S L L + + + + + L +++ + + ++L+ +DN VN KVA +
Sbjct: 1479 TKPVRQSSLLDKLSSILSMETEKQMSHSPLTMNLTSKRGINNVRVLLAEDNIVNQKVAQS 1538
Query: 905 GLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGYE 948
LK+ G V G +A + L +P +D MD+QMPEMDG E
Sbjct: 1539 MLKKLGFRADTVANGAEAVKALETLP---YDLVLMDVQMPEMDGME 1581
>gi|440683655|ref|YP_007158450.1| GAF sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428680774|gb|AFZ59540.1| GAF sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 1069
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 184/596 (30%), Positives = 289/596 (48%), Gaps = 78/596 (13%)
Query: 378 FKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAK 437
F+Q P + + L IA H+ + + ++ + + K AEAA+ AK
Sbjct: 463 FRQWTPEEIELLEAVAAQLGIALAQAHLLEQETRQREELTLKNSALEQAKHAAEAANRAK 522
Query: 438 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497
S FLA +SHEIRTPMN V+GM +L+DT L V QQD+V T + SG++L+++IN++LD +K
Sbjct: 523 SDFLAMMSHEIRTPMNAVIGMTGVLLDTNLTVQQQDFVETIRNSGESLLTIINDILDFSK 582
Query: 498 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 557
+ESGKLELE SF LR ++ VL + K+ +K +ELA I+ +VP +IGD R RQI+
Sbjct: 583 IESGKLELEEQSFELRNCVERVLDTLAPKAAEKDIELAYLINSQVPAKIIGDLTRVRQIL 642
Query: 558 TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR-CHSWKGFK 616
NL+ N+IKFT+KG + ++V+ P+A+ S K
Sbjct: 643 MNLVSNAIKFTKKGEVILSVH-----------------------AKPIANTVAESHPSPK 679
Query: 617 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
T+ ++ +++DTG GIP + +F PF Q S +R +GGTG+
Sbjct: 680 TY-----------------EILFAIKDTGIGIPANKMNLLFQPFSQADSSTTRKYGGTGL 722
Query: 677 GLSISKYLVGRM--------KGEIG------------FVSIP-NIGSTFTFTAVFGNGSS 715
GL ISK L M +G IG +P + GSTF+FT +
Sbjct: 723 GLVISKRLSEMMGGTLWVESQGSIGGNPSSRWQDEFLISCLPFDQGSTFSFTI------T 776
Query: 716 TSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 775
+ NS + + ++ S++ G + L+VD P ++ + +Q+ V+ Q L
Sbjct: 777 VPEDINSNLDSEELSTDSAQLTGKRLLIVDDNPAHCQILSLQARSWNMQIYAVTSAQQAL 836
Query: 776 SQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 835
QI G + ++ +++ + E D +RK L +L S++ + +
Sbjct: 837 EQIRQGVE-FDIAILDLNMPEMD---GVTLAQEIRKQSNCKTIPLVILT-SLTKAEISQE 891
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGN-KGNIRNWELPSMSLRHLL--LGRKILIV 892
+ I + + KP++ S L +L G K I ++P + HL L +IL+
Sbjct: 892 YSDIKIAAYLTKPVKQSQLYDALAHVFGNQPIKAIISPTQIPEIDF-HLAEKLPLRILLA 950
Query: 893 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+D VN KVA LK+ G G + L +D MD+QMPEMDG E
Sbjct: 951 EDTVVNQKVALLMLKKIGYRADVAANGLEVLTALQ-RQSYDVVLMDVQMPEMDGLE 1005
>gi|445497335|ref|ZP_21464190.1| hybrid signal transduction histidine kinase J [Janthinobacterium sp.
HH01]
gi|444787330|gb|ELX08878.1| hybrid signal transduction histidine kinase J [Janthinobacterium sp.
HH01]
Length = 1203
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 231/900 (25%), Positives = 391/900 (43%), Gaps = 149/900 (16%)
Query: 103 IFWYMSSQATEKR-REALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAID 161
+ W++ + +TE+R RE + C + A + + + + ++ L F+ P+
Sbjct: 333 VVWHLVALSTERRAREQFDTECGDIAERIASRMALYESGLRGARAL---FNAEPEPTRAQ 389
Query: 162 QMTFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQ---QGWTIKRMDTFEHNPVHKD 218
F + P G+ YA V + R+ Q QG H D
Sbjct: 390 WRDFADALD-LPHSFPGVLGLGYAPLVPAAGRDALTAQVRGQG--------------HPD 434
Query: 219 -----EPSPIEEEYAPVIFA----QDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAP 269
P E + V+ Q DM+S R +L A +G+ VL+A
Sbjct: 435 FRIWSRPGESLGEMSTVVLYLEPFQGQNLRAFGYDMMSDPIRRAALLEAARTGEPVLSAR 494
Query: 270 FRLLK----TNRLGVILTFAVYKRELPSNA--TPNERIEATDGYLGGIFDIESLVEKLLH 323
L++ + G ++ F +Y++ T +R+ A GY + ++ LL
Sbjct: 495 VVLVQNAGNAGQPGFLMYFPIYRKSAAPGVVLTSAQRMAALQGYSYSPIRADDMMAGLLG 554
Query: 324 QLASKQTIFVNVYDITNLSHPISMYGSNV-SDDGLWLVSTLNFGDPFRK--------HEM 374
+ Q I + ++D + + +Y S+ SDD +L + +P+ + H
Sbjct: 555 P--ADQAIQLEIFDGKDTTPDARLYASSRRSDD-----DSLQYPNPYLRTAPLVLLHHRW 607
Query: 375 RCRFKQKAPWPLLAISTSIG------ILVIASLVGHIFQATV---------------NRI 413
RF L A SI +L+ +++ +F V +
Sbjct: 608 TLRFTS-----LPAFENSIDRQKSHIVLLAGAIISLLFFGVVRALTARQAYAAALAEEKT 662
Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
A + E ++ + AEAA AKS+F+A +SHEIRTP+N VLGM +L +T L QQ
Sbjct: 663 AALRESESSLIVARDLAEAASRAKSEFVANMSHEIRTPLNAVLGMTHLLNNTSLSPDQQK 722
Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
Y++ ++SG +L+S++N+VLD +K+E+G++EL F L+A+L+ + ++ + S +K +E
Sbjct: 723 YLKMIRSSGNSLLSILNDVLDFSKIEAGRMELAPAPFQLQAVLEAIATIMTVNSGEKDLE 782
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
LA+ + VP++L+GD R +QI+ NL+GN+IKFTEKG + V LVE D+
Sbjct: 783 LAIGVEADVPQSLLGDGHRLQQILINLVGNAIKFTEKGSVSV---LVERTGDA------- 832
Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
DG+ + L +V D+G GIP +
Sbjct: 833 -------------------------ATDGTAT-----------LRFTVRDSGIGIPPDQL 856
Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
+++F PF Q S++R GGTG+GL IS+ + M G I S GS FT T
Sbjct: 857 AQLFAPFSQADASMTRRFGGTGLGLVISRRIAALMGGAIEVQSTSGAGSAFTLTVPL--- 913
Query: 714 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
Q ++P + LVVD P+ A I G + Q
Sbjct: 914 ----------QRTDEPPPQGALLAPQHLLVVDDDPLGADYLCRTIVARGWSSDRAGSGEQ 963
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
L+ + S + + +LV+ W+ + +R + L+ ++ +
Sbjct: 964 ALALLRSAATRYDAVLVD---WDMPGMNGLDTMQAIRAAMPDNCPAVILMVSAFGQGKLL 1020
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL----GRKI 889
+ + +V++KP+ + L +LQ A+ NK + G +I
Sbjct: 1021 HTQGAEAANAVLLKPVTMARLNETLQLAL---NKAPVVASAGAGADAGAPAGVRIDGVRI 1077
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPHQFDACFMDIQMPEMDGYE 948
L+V+DN +N VA + L GA++ V+ G+ A +LL H++D MD+QMPEMDG+E
Sbjct: 1078 LLVEDNPINQLVAQSMLSHAGASIDSVDNGRAALDLLRTDAHRYDLVLMDVQMPEMDGFE 1137
>gi|294055429|ref|YP_003549087.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
DSM 45221]
gi|293614762|gb|ADE54917.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
DSM 45221]
Length = 885
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 172/536 (32%), Positives = 265/536 (49%), Gaps = 81/536 (15%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+M K+A+AA+ AK +FLA +SHEIRTP+NGV+G ++ +TELD Q+ Y+ T G
Sbjct: 225 LMTAMKEAQAANRAKGEFLAAMSHEIRTPINGVIGASELCQETELDAEQRAYLDTVIQCG 284
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
L+SL+N+VLD +K+E+G+L LE ++FN A+L++V+ F+G + KG+EL + DR+
Sbjct: 285 NTLLSLVNDVLDFSKIEAGQLNLEQLNFNPEAVLEEVIEEFAGTVKKKGIELILSCDDRM 344
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P+ +IGDP R +QI NL+GN++KFTE G I ++ ++VE
Sbjct: 345 PKYVIGDPTRLKQIFYNLLGNAVKFTEAGEIVLSAHIVER-------------------- 384
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
SA L + V DTG GI + IF+ F Q
Sbjct: 385 ----------------------------SAQLAVIRFKVRDTGIGISETRREAIFSSFTQ 416
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
S +R +GGTG+GL+I K L M G + S GSTFT F S+ E
Sbjct: 417 EDMSTTRRYGGTGLGLAICKELTELMAGSLSVDSRVGEGSTFTLEVPFELSSTPGIE--- 473
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIA 779
+SE ++ LVVD P ++ + + G + E S + L+ L A
Sbjct: 474 ------AVPFNSELVDLRVLVVDDNPTNREIYQRMCRGWGYRCETASEGGEALRMLEHYA 527
Query: 780 SGSKIINMILVEQEVWE-KDTSVSTLFVN--NLRKLGCGFQSKLFLLANSISSSRANTST 836
S +++++Q++ +++L N +R L K+ LL++S++ S A +
Sbjct: 528 STDDPFRLVILDQQMMGVTGLDLASLIRNRQEMRDL------KMILLSSSLNRSEAERAA 581
Query: 837 DGVSIPSVIMKPLRSSMLAASLQRAMGVGN----KGNIRNWELPSMSLRHLLLGRKILIV 892
+ I + KP++ S+L + G+ + ++ E S H IL+
Sbjct: 582 -SLKIARALAKPIKRSVLLEVILETFGIRSPLCGDLDVSAAEAEKASTLH------ILLA 634
Query: 893 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+DN VN +A LK+ G V G +A E + H FD MDIQMP MDGYE
Sbjct: 635 EDNEVNQNIAKRRLKKLGHEVTVAVNGHEALEQV-AQHDFDCILMDIQMPGMDGYE 689
>gi|291570781|dbj|BAI93053.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39]
Length = 1235
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 180/537 (33%), Positives = 266/537 (49%), Gaps = 76/537 (14%)
Query: 425 ELKKKAEAA---DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL K EAA KSQFLA +SHEIRTPMNGVLGM +L+ TELD Q+D+V+ + S
Sbjct: 560 ELVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTELDTKQKDFVQAIRTS 619
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
L+++IN++LD +K+E+ ++ELE + F+L L++++ L + ++++KG+ELA +
Sbjct: 620 ANHLLAIINDILDFSKLEAQEIELEDLDFDLEECLENIIDLLAAQAENKGIELAAIVDRN 679
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
VP L GDPGR RQ++ NLM N IKFT G + + V
Sbjct: 680 VPRYLRGDPGRLRQVLLNLMSNGIKFTPAGEVTLRV------------------------ 715
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
S P +A LI L V+DTG GIP E+ R+F F
Sbjct: 716 ---------------------SRPPNYDINAPLI-LRYEVQDTGIGIPPESHGRLFEAFS 753
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
QV S +R GGTG+GL I K LV M GEIG S+ GS F FT F + S
Sbjct: 754 QVDASTTRKFGGTGLGLVICKQLVDVMGGEIGLESVVGQGSNFWFTLPFSISKTAS---- 809
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--- 778
N P +++ +K LVVD + RY IQ G+++E S LS++
Sbjct: 810 ---FPNLPETLTK----LKILVVDANASVRQSVRYLIQSWGMELEEASGPEMALSKLRDA 862
Query: 779 ASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 837
A+ ++ + + +Q + + D +++ + N +KL L+ + S D
Sbjct: 863 ANNNQPFKLAIFDQNLLIDGDKNLAAVIQNE----PMLSDTKLVLMTSMRRLSSVEDLLD 918
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL-------PSMSLRHLLLGRKIL 890
S ++KP+R+S L +L AM GN+ + S +L L K+L
Sbjct: 919 DGWANSYLIKPVRASRLFDALLTAMANEITGNLAEFRSRSDGFGDNSTTLSPTGLDLKVL 978
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
+ +D+ +N +V L G E G++ ELL H +D FMD QMP++DGY
Sbjct: 979 LAEDHPINQQVLLNQLSLLGIEADLAENGEQVLELLSDRH-YDLVFMDCQMPKLDGY 1034
>gi|407000332|gb|EKE17662.1| hypothetical protein ACD_10C00329G0001 [uncultured bacterium]
Length = 847
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 171/554 (30%), Positives = 269/554 (48%), Gaps = 85/554 (15%)
Query: 413 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 472
I+ V+ ++ K+ AEAA+ A+ FLA +SHEIRTPMNG++GM ++ +DTELD Q+
Sbjct: 172 ISDVKAAEAALILAKEAAEAANQARGAFLANMSHEIRTPMNGIIGMTELTLDTELDAEQR 231
Query: 473 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 532
Y++T ++S ++L+ ++N++LD +K+E+GK+ E ++F+L L + + + + KGV
Sbjct: 232 HYLKTVKSSAESLLVIVNDILDFSKIEAGKIRFETLAFSLHDTLLEAARVLAVSAHKKGV 291
Query: 533 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592
EL V +S VP +GDP R RQ+I NL+GN+IKFTE+G + + V L D I
Sbjct: 292 ELIVEMSPDVPLRALGDPTRLRQVIINLIGNAIKFTERGEVTLLVTL-----DQI----- 341
Query: 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 652
DGS + + SV DTG G+PL+
Sbjct: 342 ---------------------------TDGS-----------VFIKFSVRDTGIGVPLDK 363
Query: 653 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712
Q IF F Q S +R GGTG+GL+IS LV M G I S P +GS F+F A FG
Sbjct: 364 QQAIFEAFSQADVSTTRRFGGTGLGLAISSRLVQLMDGRIWLDSTPGVGSVFSFVARFGT 423
Query: 713 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 772
T + P +++QG +AL+++ + ++RLG+QV +V
Sbjct: 424 VLET----------HPPALPEAKYQGRRALIIEDNAAAGRCLLQMLERLGLQVSLVGSAE 473
Query: 773 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF-----------QSKLF 821
L+ + + D +F + GF + +L
Sbjct: 474 AGLAAVERSRAV-------------DFPYDYIFADANMASPAGFSLAESWRDTTRRERLL 520
Query: 822 LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR 881
++ + + T + + + ++KP+ + LA +L A GV + + +++L S
Sbjct: 521 MMLTTENQRHDLTRLREMEVSAHLVKPIGAGDLADALGLAEGVTAELELASFDLGSAEPA 580
Query: 882 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 941
L KIL+ +DN VN ++A L+R+ VV G +A E H FD MD+QM
Sbjct: 581 DKAL--KILLAEDNPVNQELARRLLERHSHRVVVANNGAEAVEQFDNGH-FDIILMDMQM 637
Query: 942 PEMDGYEMLPCFES 955
P M G E S
Sbjct: 638 PVMGGVEATEVIRS 651
>gi|409993617|ref|ZP_11276752.1| sensory box histidine kinase/response regulator [Arthrospira
platensis str. Paraca]
gi|409935526|gb|EKN77055.1| sensory box histidine kinase/response regulator [Arthrospira
platensis str. Paraca]
Length = 1242
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 180/537 (33%), Positives = 266/537 (49%), Gaps = 76/537 (14%)
Query: 425 ELKKKAEAA---DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL K EAA KSQFLA +SHEIRTPMNGVLGM +L+ TELD Q+D+V+ + S
Sbjct: 567 ELVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTELDTKQKDFVQAIRTS 626
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
L+++IN++LD +K+E+ ++ELE + F+L L++++ L + ++++KG+ELA +
Sbjct: 627 ANHLLAIINDILDFSKLEAQEIELEDLDFDLEECLENIIDLLAAQAENKGIELAAIVDRN 686
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
VP L GDPGR RQ++ NLM N IKFT G + + V
Sbjct: 687 VPRYLRGDPGRLRQVLLNLMSNGIKFTPAGEVTLRV------------------------ 722
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
S P +A LI L V+DTG GIP E+ R+F F
Sbjct: 723 ---------------------SRPPNYDINAPLI-LRYEVQDTGIGIPPESHGRLFEAFS 760
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
QV S +R GGTG+GL I K LV M GEIG S+ GS F FT F + S
Sbjct: 761 QVDASTTRKFGGTGLGLVICKQLVDVMGGEIGLESVVGQGSNFWFTLPFSISKTAS---- 816
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--- 778
N P +++ +K LVVD + RY IQ G+++E S LS++
Sbjct: 817 ---FPNLPETLTK----LKILVVDANASVRQSVRYLIQSWGMELEEASGPEMALSKLRDA 869
Query: 779 ASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 837
A+ ++ + + +Q + + D +++ + N +KL L+ + S D
Sbjct: 870 ANNNQPFKLAIFDQNLLIDGDKNLAAVIQNE----PMLSDTKLVLMTSMRRLSSVEDLLD 925
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL-------PSMSLRHLLLGRKIL 890
S ++KP+R+S L +L AM GN+ + S +L L K+L
Sbjct: 926 DGWANSYLIKPVRASRLFDALLTAMANEITGNLAEFRSRSDGFGDNSTTLSPTGLDLKVL 985
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
+ +D+ +N +V L G E G++ ELL H +D FMD QMP++DGY
Sbjct: 986 LAEDHPINQQVLLNQLSLLGIEADLAENGEQVLELLSDRH-YDLVFMDCQMPKLDGY 1041
>gi|381151696|ref|ZP_09863565.1| PAS domain S-box [Methylomicrobium album BG8]
gi|380883668|gb|EIC29545.1| PAS domain S-box [Methylomicrobium album BG8]
Length = 1176
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 166/539 (30%), Positives = 271/539 (50%), Gaps = 79/539 (14%)
Query: 417 EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 476
E+ H + + + AE A K++FLA +SHEIRTPMNGVLGMLD+L DT++ Q+D +
Sbjct: 516 EQARHSLEKARNAAEEAAKTKAEFLANMSHEIRTPMNGVLGMLDILKDTDMSYEQRDLLE 575
Query: 477 TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 536
TA S ++L+++IN++LD +K+E+GK ELE + FNL A+++++ +L S ++ K +EL
Sbjct: 576 TAANSAESLLAIINDILDFSKLEAGKCELEQIEFNLPALVEEICALMSVRAHAKELELNC 635
Query: 537 YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSS 596
++ +P +GDP R RQ++ NL+GN++KFTE+G + V V
Sbjct: 636 FLPPTLPARWLGDPNRIRQVLVNLVGNAVKFTERGEVSVKVLA----------------- 678
Query: 597 KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 656
++S+ D L V ++DTG G+ E Q+ +
Sbjct: 679 -------------------------------QASAGDDSALRVEIKDTGIGMSPEGQTLL 707
Query: 657 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSST 716
F PF Q S +R GGTG+GLSISK L+ MKG IG S+ G+ F FT
Sbjct: 708 FQPFAQADNSTARRFGGTGLGLSISKNLIDLMKGNIGVESVQGKGTCFWFTLPL------ 761
Query: 717 SNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS 776
Q ++N ++ G +ALVVD K+ RY++Q G++V + L+
Sbjct: 762 ------QPVDNHAAPSLTDLSGKRALVVDDNDTNRKILRYYLQHWGMRVSEADNAPAALT 815
Query: 777 QIASGS---KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
++ + + + +++L + + + D + + + LL++ S A+
Sbjct: 816 ELQTAALKNEAYDILLSDLHMPDMDGYALARAIATFPSIAA---TPRLLLSSGGMGSEAD 872
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR----NWELPSMSLRHLLLGRKI 889
G + ++KP+R + L ++ A+ + + ELP ++I
Sbjct: 873 RLALGFA--QSLLKPVRQAQLLEAIASALHAPLRKTLSPIKIAEELPDYG------SKQI 924
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L+V+DN VN KV A L ++ E G++A + L +D FMD QMP MDGYE
Sbjct: 925 LVVEDNKVNQKVILAMLGKFRCTPDLAENGREALDKLA-QKTYDLVFMDCQMPVMDGYE 982
Score = 43.9 bits (102), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 870 IRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TEL--- 925
+ N PS++ L G++ L+VDDN+ N K+ L+ +G V + A TEL
Sbjct: 764 VDNHAAPSLTD---LSGKRALVVDDNDTNRKILRYYLQHWGMRVSEADNAPAALTELQTA 820
Query: 926 LMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIA 960
+ +D D+ MP+MDGY + +F IA
Sbjct: 821 ALKNEAYDILLSDLHMPDMDGYALARAIATFPSIA 855
>gi|404492663|ref|YP_006716769.1| sensor histidine kinase response regulator, Hpt domain-containing
[Pelobacter carbinolicus DSM 2380]
gi|77544744|gb|ABA88306.1| sensor histidine kinase response regulator, Hpt domain-containing
[Pelobacter carbinolicus DSM 2380]
Length = 1014
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 168/541 (31%), Positives = 267/541 (49%), Gaps = 78/541 (14%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+++ + + ++ AE A AKSQFL +SHEIRTPMNGV+GM ++L+D+ L Q+
Sbjct: 337 QLQSSIQELQQARQHAEEASRAKSQFLVNMSHEIRTPMNGVIGMTELLLDSPLAEEQRQI 396
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
T SG+AL+ +IN++LD +K+E+GKL+LE + F++ I+++ LF+ K+Q KG+EL
Sbjct: 397 ADTVAESGRALLQIINDILDFSKLEAGKLQLENIPFDICGIVEEAAGLFAAKAQTKGLEL 456
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
V ++D VP L+GDPGR RQ++ NL+ N++KFT++G++ VT+
Sbjct: 457 VVDMADDVPPLLLGDPGRLRQVLVNLLSNALKFTKQGYVLVTL----------------- 499
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
R H SA ++VS+ D+G GI +
Sbjct: 500 -------------RAHH---------------ITEQSA---TIVVSIRDSGIGIEPQHIP 528
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F PF Q S +R +GGTG+GLSI + L+G M G+I S P GS F F
Sbjct: 529 QLFRPFSQADGSTTRKYGGTGLGLSICQDLIGHMGGQIHVFSQPGQGSNFWFEMTMTKDP 588
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 774
+ H + E + M+AL+VDP P+ + + ++ GI+ + +
Sbjct: 589 ACGMHH---------VACIPELKNMQALIVDPHPLTRRSVQQQLREWGIKAKTADHGKKA 639
Query: 775 LSQI-ASGSKIINMILV-----EQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS 828
L+ + A +II + L +E+ + V+ ++ LG L +
Sbjct: 640 LAMLQAQNFQIILVALTLPDMPGRELIQHCCDVAQTVPKHIITLG--------LTGQKLP 691
Query: 829 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK 888
R +D ++ S + KP+R S L L A + + + S +
Sbjct: 692 PCRI---SDATTV-SYLTKPIRPSKLLLHLTNAPPLEDNVQSQTPCPNPASETSTPTKAR 747
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFMDIQMPEMDGY 947
+L+V+DN VN +VA L++ G V G++A T P FD FMD QMP MDGY
Sbjct: 748 VLLVEDNPVNQQVAKGMLEKLGCNVTLAADGQEALTAYSHSP--FDLLFMDCQMPNMDGY 805
Query: 948 E 948
E
Sbjct: 806 E 806
>gi|385798974|ref|YP_005835378.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens
DSM 2228]
gi|309388338|gb|ADO76218.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens
DSM 2228]
Length = 921
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 179/551 (32%), Positives = 274/551 (49%), Gaps = 85/551 (15%)
Query: 418 EDYHGMMELKK--------KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
E+Y ++LK KA A AKS+FL+T+SHEIRTPMN ++GM ++L +TEL
Sbjct: 376 EEYSNELKLKNLELKQARDKAMEASRAKSEFLSTMSHEIRTPMNSIIGMAELLQETELSE 435
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
QQ Y+ Q +G++L++LIN++LD +K+E+G++ELEA FNL ++++ + S ++
Sbjct: 436 QQQKYINIFQNAGESLLTLINDILDLSKIEAGRIELEAEKFNLVETVENIAEMISLRAFK 495
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
KG+EL + I+ VPE +IGD R RQI+ NL+GN++KFTEKG +F+ + +
Sbjct: 496 KGLELPLRIAAEVPECVIGDSERIRQILINLLGNAVKFTEKGQVFLDLRI---------- 545
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
S FKS D +I +++DTG GI
Sbjct: 546 ----------------------------------DSEFKSK--DQKQVIFAIKDTGIGIE 569
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
Q +IF F Q S +R +GGTG+GL+ISK LV M G+I S P +GSTF F+
Sbjct: 570 KAKQKQIFDSFTQADSSSTRKYGGTGLGLTISKQLVELMGGKIWLKSTPQLGSTFYFSLP 629
Query: 710 FGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS 769
+ SQ N F+ K LVVD P + + + GI++
Sbjct: 630 LKIVENNFKSQKSQTRN---------FEQYKILVVDDNPTNIFILKEILAERGIEIGTAQ 680
Query: 770 DQLQCLSQIA---SGSKIINMILVEQEVWEK---DTSVSTLFVNNLRKLGCGFQ-SKLFL 822
+Q + L++IA +IL++ + +K DTS +K+ F L +
Sbjct: 681 NQQEALTEIAQSIEAQAPYQIILMDNFMPQKNGLDTS---------KKIREKFDLPNLQI 731
Query: 823 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV--GNKGN--IRNWELPSM 878
+ S + + N I +MKP+R L + L++A K N + E +
Sbjct: 732 IILSSAYAEKNLQNREGLINDFMMKPVRKKDLFSLLEKAAAKIENKKANDFKQKAEKEKV 791
Query: 879 SLRHLLLGRK-ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937
S + L K +LIV+DN N + A LK+ + + G +A E +D M
Sbjct: 792 SQKDLTTANKELLIVEDNPDNRFLIKAFLKKKNYQLDIAKNGIEAVEKF-KSKLYDLVLM 850
Query: 938 DIQMPEMDGYE 948
DIQMPEM+GY+
Sbjct: 851 DIQMPEMNGYQ 861
>gi|392408843|ref|YP_006445450.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390621979|gb|AFM23186.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1390
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 176/547 (32%), Positives = 275/547 (50%), Gaps = 90/547 (16%)
Query: 419 DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 478
D ++E K AE+A AKS FLAT+SHEIRTPM+G++GM ++LM T+L Q +Y+
Sbjct: 731 DVSDLVEAKLAAESASKAKSDFLATMSHEIRTPMHGIIGMTELLMQTQLSREQTEYLEII 790
Query: 479 QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 538
+ASG +L+ LIN++LD +K+E+GK ELE + F LRA+L + + + ++ KG+ELA +
Sbjct: 791 KASGDSLLRLINDILDFSKIEAGKFELEHIGFGLRAMLGETMESLAIQAHQKGLELAFRV 850
Query: 539 SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 598
S VP+ L GDP R RQII NL+GN+IKFT G +F+ V +V+S
Sbjct: 851 SPEVPDVLKGDPVRLRQIIVNLVGNAIKFTSAGEVFMDV-----IVES------------ 893
Query: 599 TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 658
+S+ + L SV DTG GIP + Q IF+
Sbjct: 894 ------------------------------ASTPNETTLHFSVSDTGIGIPEDKQQEIFS 923
Query: 659 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 718
F QV +SR +GGTG+GL+I L M G++ S GSTF A F
Sbjct: 924 SFTQVDTGMSRRYGGTGLGLAIGSRLAAMMDGKLWVESKIGNGSTFHLMAKF-----EIQ 978
Query: 719 EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
E+++ ++ Q + G+ LVVD ++ + + G+ V++ L+ +
Sbjct: 979 ENSTDRL--QESDTRFNLMGLPVLVVDDNATNLRILKEILTGFGMNPTCVNEASAALTAV 1036
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS---------ISS 829
K + L+ T+ N+ ++ GF+ ++ + ++S
Sbjct: 1037 KEAQKTESPFLL------------TILDANMPEMD-GFELSRTIVETTGSRGPVIMMLTS 1083
Query: 830 SRANTSTD-----GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW---ELPSMSLR 881
SR ++ G+SI + KP++ + L ++Q +G+ +K + N E + R
Sbjct: 1084 SRNRGDSERCKQCGISI--YLKKPIKQAELFNAIQMTLGIAHKPDESNQPVAECIAGERR 1141
Query: 882 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 941
LL KIL+V+DN VN +A L++ G V GK+A + L FD MDI+M
Sbjct: 1142 RLL---KILLVEDNPVNQTLALRLLEKRGCTVSIASNGKEALKSL-EAESFDLILMDIEM 1197
Query: 942 PEMDGYE 948
PEM+G+E
Sbjct: 1198 PEMNGFE 1204
Score = 47.0 bits (110), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 881 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM--- 937
R L+G +L+VDDN NL++ L +G CV A + + ++ F+
Sbjct: 991 RFNLMGLPVLVVDDNATNLRILKEILTGFGMNPTCVNEASAALTAVKEAQKTESPFLLTI 1050
Query: 938 -DIQMPEMDGYEM 949
D MPEMDG+E+
Sbjct: 1051 LDANMPEMDGFEL 1063
>gi|410664806|ref|YP_006917177.1| MmoS protein [Simiduia agarivorans SA1 = DSM 21679]
gi|409027163|gb|AFU99447.1| MmoS protein [Simiduia agarivorans SA1 = DSM 21679]
Length = 798
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 169/534 (31%), Positives = 252/534 (47%), Gaps = 69/534 (12%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K AE A+ AKSQFLAT+SHEIRTPMNGV+GM+++L DT L+ TQQ Y+ SG+ L+
Sbjct: 268 KAVAETANRAKSQFLATMSHEIRTPMNGVIGMVELLRDTPLNATQQHYLDVIHRSGETLI 327
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN++LD +K+E+GK+ELE+ FNL +++D + LF + + +EL +S P L
Sbjct: 328 DIINDILDYSKIEAGKMELESAPFNLEDLVEDCVQLFGATANKRHIELIGSVSPTTPLNL 387
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R RQ++ NL+GN+ KFT +G++ V E E
Sbjct: 388 MGDPTRLRQLLINLIGNAFKFTSEGYVIV------------EARRE-------------- 421
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
++S D + S+ D+G GI E +R+F F Q S
Sbjct: 422 ---------------------ENSDPDQPTIRFSIRDSGIGINDEGMARLFQSFSQADSS 460
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R GGTG+GL+I K L M GEIG VS GSTF FTA F + ++
Sbjct: 461 TTRKFGGTGLGLAICKRLAEMMGGEIGVVSTEGKGSTFWFTARF--------QREQIKLP 512
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+ N+ G + LVV+ A + +H + GI V ++D L + + +
Sbjct: 513 AKSNTSGGALAGKRLLVVEDNIYLADIISHHCKSWGIHV-FIADSESALDHLLADNHAAG 571
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+ D V L + + + ++ + S I V
Sbjct: 572 FDFAYLDYEMPDVDVLALSKKIQHYRDAPVPTAMQIGSDIMPESE---QLQAAGIAEVRR 628
Query: 847 KPLRSSMLAASLQRAMGVGN---KGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
KP+ L +L +G+ + +++ L S HL K+L+ +DNNVN V
Sbjct: 629 KPVTPKKLKQALSGLLGIDTGHAEASVKENNLKLYS--HL----KVLVAEDNNVNRMVIK 682
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPH-QFDACFMDIQMPEMDGYEMLPCFESF 956
L ++G VE GK A E + P FD MD +MPEMDG+E C +
Sbjct: 683 GMLGKFGIEPEMVENGKLAFEAVTAPDADFDLVLMDCEMPEMDGFEATRCIREY 736
>gi|409994119|ref|ZP_11277239.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
gi|291570461|dbj|BAI92733.1| two-component hybrid sensor and regulator [Arthrospira platensis
NIES-39]
gi|409935032|gb|EKN76576.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
Length = 1351
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 198/632 (31%), Positives = 297/632 (46%), Gaps = 114/632 (18%)
Query: 344 PISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVG 403
PI +YG W + LN +PFR + K A W IG
Sbjct: 605 PIKVYGQVYGTLCFWSQNPLN--EPFRAVDQEL-LKLMAQW--------IG--------- 644
Query: 404 HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM 463
+ + R +E + E + +A AA AKS+FLAT+SHEIRTPMN V+GM +L+
Sbjct: 645 ----SEIERQQTAQE----LSEARDEALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLL 696
Query: 464 DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 523
DT L + QQD+V T ++S AL+SLIN++LD +K+ESGKL+LEA F+LR L++ L L
Sbjct: 697 DTPLSLVQQDFVETIRSSSDALLSLINDILDFSKIESGKLDLEAFPFSLRTCLEESLDLL 756
Query: 524 SGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 583
+ K+ K +EL +I P ++GD R RQI+ NL+ N++KFT +G + V+V
Sbjct: 757 ATKAASKSLELGYFIDAYTPNEVVGDMARVRQILVNLLSNAVKFTARGEVLVSV------ 810
Query: 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 643
S+K S + KS + + V+V D
Sbjct: 811 -----------SAKPLFSDLELT--------------------AKSMYSTHYQIEVAVSD 839
Query: 644 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS------- 696
TG GIP++ +R+F F QV S +R +GGTG+GL+IS+ L M G++ VS
Sbjct: 840 TGIGIPVDRMNRLFKSFSQVDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGDAIGGH 899
Query: 697 ----------IPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 746
P GSTF F+ V +SQ + Q N + E G + L++D
Sbjct: 900 PPENWQINKDTPTQGSTFYFSIVV---------QSSQNLLPQWNH-ADELAGKRLLIIDS 949
Query: 747 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFV 806
P ++ +Q G+ VE + ++ + G K ++ +VE E+ D F
Sbjct: 950 HPTNRQILTKQVQCWGLVVEDTDSPTEAIAWLKQG-KTFDIAIVEMEIANLD---GFNFA 1005
Query: 807 NNLRKLGCGFQSKLFLLANSISSSRAN-TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865
+R+ G L +L IS + N TD + + KP++ S L L + G
Sbjct: 1006 TQVRQTSAGVDLPLVML---ISVGQQNFNPTDHRDFVAFLNKPIKQSPLYNILINVL-CG 1061
Query: 866 NKGNIRNW---------ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCV 916
I+NW ++P ++ + L +IL+ +D+ VN KVA L+R G
Sbjct: 1062 EPLQIKNWSRNQMRSPQDIPLLAEK---LPLRILLAEDHLVNQKVALQILQRMGYRADVA 1118
Query: 917 ERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G + E L +D MD+QMP MDG E
Sbjct: 1119 GNGLEVLEAL-ERQPYDVILMDMQMPIMDGLE 1149
>gi|406952533|gb|EKD82114.1| hypothetical protein ACD_39C01476G0002 [uncultured bacterium]
Length = 976
Score = 246 bits (627), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 183/544 (33%), Positives = 268/544 (49%), Gaps = 96/544 (17%)
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
EL +AE A+VAKS+FLA +SHEIRTPMNG++GM +L++T L Q+ Y ++S +
Sbjct: 317 ELAHQAEQANVAKSEFLANMSHEIRTPMNGIIGMSSLLLETTLTAEQKQYADVVRSSCEN 376
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L+SL+N++LD +K+E+GKL LE ++F+LR L+D + + K+ +K +ELA ++ P
Sbjct: 377 LLSLVNDILDFSKIEAGKLSLEHINFDLRTTLEDAFEMLAIKAHEKKIELACVVAPETPS 436
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 604
L GDPGR RQII NL+GN+IKFT++G + + V + EE +
Sbjct: 437 LLHGDPGRLRQIILNLVGNAIKFTDQGEVILNVKVDEEHEHDV----------------- 479
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
++ +V +DTG GI + SR+FT FMQV
Sbjct: 480 -----------------------------MLRFVV--KDTGIGIAPDHLSRLFTAFMQVD 508
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
S +R +GGTG+GL+IS+ L M G IG S P +GS F FTA F Q
Sbjct: 509 GSTTRKYGGTGLGLAISRQLAELMGGNIGVTSEPGVGSEFWFTAKF----------TRQD 558
Query: 725 MNNQPNSVS-SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ---C-LSQIA 779
N P S+ ++ G++ L+VD + + RL +VS+ L C S+ A
Sbjct: 559 DENVPESLPMADITGIRILIVDD---------HAVNRL-----LVSNLLTSWGCRYSEAA 604
Query: 780 SGSKIINMI-LVEQE-----VWEKDTSVSTLFVNNLR---KLGCGFQSKLFLLANSISSS 830
G + M+ + E E V D + T+ L K S +L S+
Sbjct: 605 DGKAALEMLEIAEAEGDPYYVALLDMLMPTMDGRALCEKIKSNPKLASTRLILLTSLGQR 664
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLL---- 885
V + KPLR S L L +G+ +++N L S + RH +L
Sbjct: 665 GDAEWIHKVGFAGYLTKPLRQSQLHDCLSMVVGM---TDVQNVSLTSELITRHRVLEAHR 721
Query: 886 -GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
+IL+V+DN N +VA LK+ G G +A LL H + MD QMPEM
Sbjct: 722 RNVRILLVEDNITNQEVALITLKKLGYRADLATNGIEALRLL-SEHNYSMVLMDCQMPEM 780
Query: 945 DGYE 948
DG+E
Sbjct: 781 DGFE 784
>gi|428218417|ref|YP_007102882.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427990199|gb|AFY70454.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 1669
Score = 246 bits (627), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 215/697 (30%), Positives = 324/697 (46%), Gaps = 98/697 (14%)
Query: 318 VEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDP----FRKHE 373
V++LL Q + + NVY NLS P+ + + V T G P F
Sbjct: 935 VQQLLSQ--DEAIVASNVYQDQNLS-PVLELAHRFNVKSILAVRTSYQGQPNGAIFLHQC 991
Query: 374 MRCR-FKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEA 432
R R + Q+ L A+S +GI + + + + + ++ E + + K+ AEA
Sbjct: 992 NRFRKWTQEEIELLEAVSAQVGIALAQA---QLLERATQQSYELGEKNTALQQAKQDAEA 1048
Query: 433 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEV 492
A+ AKS+FLA +SHEIRTPMNGV+GM +L+DT L Q++YV ++SG++L+++IN++
Sbjct: 1049 ANRAKSEFLAMMSHEIRTPMNGVIGMTGLLLDTPLSKVQREYVEIVRSSGESLLTIINDI 1108
Query: 493 LDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGR 552
LD +K+ESGKLELE F+L L + L K+ +KG+ L I VP+ + GD R
Sbjct: 1109 LDFSKIESGKLELEEQPFDLLDCLAGSIDLLGPKAVEKGLVLNYLIEPDVPQQITGDVTR 1168
Query: 553 FRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE----TELSSSKNTLSGYPVADR 608
RQI+ NL+ N IKFTE G + VTV L + S ++ ++L S + + A+
Sbjct: 1169 LRQILVNLIANGIKFTEAGEVSVTVSLSSAMDSSSSLDGRSLSQLDSETDETDEFNPANE 1228
Query: 609 CHSW-KGFKTFNQDGSTSPFKSSSADLINLIVSVE------------------DTGQGIP 649
W +G K+ D S S + + I +VE DTG GIP
Sbjct: 1229 ---WGQGAKSGESDQSGELASSDGGNNLEAIAAVEPEHNQSLAHSHTIQFAVRDTGIGIP 1285
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF--- 706
E R+F F QV SI+R +GGTG+GL ISK L M G + S + GS F F
Sbjct: 1286 PEKMERLFKAFSQVDASITRQYGGTGLGLVISKRLCELMGGTMRVESELDRGSIFYFTLS 1345
Query: 707 -TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 765
TA+ +STS + +Q+N G+KAL+V R + + Q GI+
Sbjct: 1346 TTAIASESTSTSINYVQKQLN-----------GLKALIVADREDNRAILSTYTQAWGIET 1394
Query: 766 EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL----- 820
+ S + LS ++ +IL Q + V + KL QS +
Sbjct: 1395 KTTSSGAEALSMLSDRQNFDLVILDLQ-----------MPVADELKLAQSMQSTVPGKPI 1443
Query: 821 -FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE----- 874
+L S+ S +++ KPL S L ++ R + N N++ W+
Sbjct: 1444 PLILLTSVGVSTKQLQQASNHRIAILAKPLSQSKLHQAIVRIIPDQNIDNVKPWQRRQEV 1503
Query: 875 -----------------------LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGA 911
L +++ + KIL+ +DN VN KVA L++ G
Sbjct: 1504 TTSTNRAAHDRPNPTTFRSSSNRLENVANLSNQIPIKILLAEDNAVNQKVAIRMLEKMGY 1563
Query: 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
V G +A E L +D MD+QMPEMDG E
Sbjct: 1564 RADLVGNGLEAIEALQ-RQTYDLVLMDVQMPEMDGME 1599
>gi|90023292|ref|YP_529119.1| Signal transduction histidine kinase-like protein [Saccharophagus
degradans 2-40]
gi|89952892|gb|ABD82907.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
2-40]
Length = 765
Score = 246 bits (627), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 171/528 (32%), Positives = 257/528 (48%), Gaps = 76/528 (14%)
Query: 426 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 485
L ++AEAA+ AKSQF+AT+SHEIRTPMNGV+GM++ML DT LD +Q+ Y+ + SG +L
Sbjct: 242 LVQEAEAANRAKSQFIATMSHEIRTPMNGVIGMVEMLRDTTLDDSQRHYLGIIERSGDSL 301
Query: 486 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 545
+++IN++LD +K+E+GK+ LE + F+L +L+D + +FS + + +EL IS P+
Sbjct: 302 MNIINDILDYSKIEAGKMSLEHMQFDLEELLEDCVQMFSASTDKRNIELICSISPNTPKQ 361
Query: 546 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 605
L+GDP R +Q++ NL+GN+ KFT +GHI+V V
Sbjct: 362 LMGDPTRLKQVLVNLIGNAFKFTSEGHIYVEARQV------------------------- 396
Query: 606 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665
+S ADL + SVED+G GI Q ++F F Q
Sbjct: 397 ----------------------NASDADLPMIHFSVEDSGIGIESNQQEKLFDAFCQADG 434
Query: 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 725
S +R GGTG+GL+I K L M GEIG S GSTF F+AVF H + +
Sbjct: 435 STTRKFGGTGLGLTICKQLAEMMGGEIGVYSREKAGSTFWFSAVFT--------HVEKAI 486
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII 785
N QP G K LVV+ I KV H I +V + L ++ SG
Sbjct: 487 NEQP---PQSLAGKKLLVVNQSKIVEKVIASHAADWNIACRIVHSGEKAL-EVISGQHHY 542
Query: 786 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLA----NSISSSRANTSTDGVSI 841
+ I++ Q++ + + +R L + +FL+ + + R +T T +
Sbjct: 543 DFIILSQDLQDMP---GLDVADKVRTLAAYSSTPIFLVTKVRKSQLPEDRLHTITALLPY 599
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
P I K ++L + K N + + L +L+ +DN VN V
Sbjct: 600 PLSIHKI--ENLLQTKPTHTVVEEQKTNTQATTVSEGPLH-------VLVAEDNPVNRMV 650
Query: 902 AAAGLKRYGAAVVCVERGKKATELLM-PPHQFDACFMDIQMPEMDGYE 948
L ++ A E G +A + P +D MD +MPEMDG+E
Sbjct: 651 IEGLLAKFDIAPKFAEDGLQALNAVTESPTPYDLIIMDCEMPEMDGFE 698
>gi|376004438|ref|ZP_09782141.1| Signal transduction histidine kinase [Arthrospira sp. PCC 8005]
gi|375327203|emb|CCE17894.1| Signal transduction histidine kinase [Arthrospira sp. PCC 8005]
Length = 1355
Score = 246 bits (627), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 197/632 (31%), Positives = 298/632 (47%), Gaps = 114/632 (18%)
Query: 344 PISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVG 403
PI +YG W + LN +PFR + K A W IG
Sbjct: 605 PIKVYGQVYGTLCFWSQNPLN--EPFRAVDQEL-LKLMAQW--------IG--------- 644
Query: 404 HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM 463
+ + R +E + + + +A AA AKS+FLAT+SHEIRTPMN V+GM +L+
Sbjct: 645 ----SEIERQQTAQE----LSQARDEALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLL 696
Query: 464 DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 523
DT L + QQD+V T ++S AL+SLIN++LD +K+ESGKL+LEA F+LR L++ L L
Sbjct: 697 DTPLSLVQQDFVETIRSSSDALLSLINDILDFSKIESGKLDLEAFPFSLRTCLEESLDLL 756
Query: 524 SGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 583
+ K+ K +EL +I P ++GD R RQI+ NL+ N++KFT +G + V+V
Sbjct: 757 ATKAASKSLELGYFIDAYTPNEVVGDMARVRQILVNLLSNAVKFTARGEVLVSV------ 810
Query: 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 643
S+K S + KS + + V+V D
Sbjct: 811 -----------SAKPLFSDLELT--------------------AKSMYSTHYQIEVAVSD 839
Query: 644 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS------- 696
TG GIP++ +R+F F QV S +R +GGTG+GL+IS+ L M G++ VS
Sbjct: 840 TGIGIPVDRMNRLFKSFSQVDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGDAIGGH 899
Query: 697 ----------IPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 746
P GSTF F+ V +SQ + Q N + E G + L++D
Sbjct: 900 PPENWQINKDTPTQGSTFYFSIVV---------QSSQNLLPQWNH-ADELAGKRLLIIDS 949
Query: 747 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFV 806
P ++ +Q G+ VE + ++ + G K ++ +VE E+ D F
Sbjct: 950 HPTNRQILTKQVQCWGLVVEDTDSPTEAIAWLKQG-KTFDIAIVEMEIANLD---GFNFA 1005
Query: 807 NNLRKLGCGFQSKLFLLANSISSSRAN-TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865
+R+ G L +L IS ++ N TD + + KP++ S L L + G
Sbjct: 1006 TQVRQTSAGVDLPLVML---ISVAQQNFNPTDHRDFVAFLNKPIKQSPLYNILINVL-CG 1061
Query: 866 NKGNIRNW---------ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCV 916
I+NW ++P ++ + L +IL+ +D+ VN KVA L+R G
Sbjct: 1062 EPLQIKNWSRNQMRSPQDIPLLAEK---LPLRILLAEDHLVNQKVALQILQRMGYRADVA 1118
Query: 917 ERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G + E L +D MD+QMP MDG E
Sbjct: 1119 GNGLEVLEAL-ERQPYDVILMDMQMPIMDGLE 1149
>gi|182414033|ref|YP_001819099.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
gi|177841247|gb|ACB75499.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
Length = 812
Score = 245 bits (626), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 173/523 (33%), Positives = 259/523 (49%), Gaps = 77/523 (14%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KS+FLA +SHEIRTPMNGV+GM +L+DT+LD Q+ + + + S + L+++IN++LD +
Sbjct: 283 KSEFLANMSHEIRTPMNGVIGMTGLLLDTKLDPEQRQFAESVRNSAENLMTVINDILDFS 342
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+GKL E + F+L ++ L + + ++Q KG+EL I+ +VP L GDPGR RQI
Sbjct: 343 KIEAGKLLFEELDFDLVETIEGTLDMLAERAQGKGIELIDGIAPQVPRYLRGDPGRLRQI 402
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+TNL+GN+IKFTE G EVV S +E E ++ H+ F
Sbjct: 403 LTNLLGNAIKFTEHG----------EVVLSTTLERETAT--------------HAIVRF- 437
Query: 617 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
V DTG GI + Q+R+F F Q S +R +GGTG+
Sbjct: 438 -----------------------DVTDTGIGISRDVQARLFQSFEQADSSTTRRYGGTGL 474
Query: 677 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPN---SVS 733
GL+ISK LV M GEIG S +GSTF FT F Q+ P V
Sbjct: 475 GLAISKQLVAMMHGEIGVQSEAGVGSTFWFTVEF------------QKQTGAPKRVRRVQ 522
Query: 734 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSKIINMILV 790
+ ++ LVVD K+ R+ I +Q + + L+ + A+ + ++ L+
Sbjct: 523 RDLTSLRVLVVDDNATNRKILRHQIFAWNMQKGSAAGGHEALRLMRDAAAAGEPYDIALL 582
Query: 791 EQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLR 850
+ ++ E D L + K ++ S+ I + ++KP++
Sbjct: 583 DMQMPEMD----GLTLARAIKDDPALAPTHLIILTSLGHRLTRDELQAAGIDAYLVKPVK 638
Query: 851 SSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR-----KILIVDDNNVNLKVAAAG 905
S L +L A+GV R++E P+ S + + L+ +DN VN VAAA
Sbjct: 639 QSRLFDTLMDAIGVAQVFT-RSYETPARSKPNAADTPEPPILRALVAEDNQVNQTVAAAQ 697
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
LK+ +V V G + E L +D FMD QMPEMDGYE
Sbjct: 698 LKKLRCSVDVVANGLEVLEALSRA-PYDVIFMDCQMPEMDGYE 739
>gi|57282048|emb|CAD24778.1| histidine kinase-like protein [Oryza sativa]
Length = 182
Score = 245 bits (626), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 118/182 (64%), Positives = 150/182 (82%), Gaps = 3/182 (1%)
Query: 507 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK 566
V F+LR + DD+LSLF GK+Q+KG+ELAVY+SD+VP+ LIGDPGR RQIITNL+GNSIK
Sbjct: 2 TVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIITNLVGNSIK 61
Query: 567 FTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD--GST 624
FTE+GHI++TV++VEEV+ +EVET + ++ NTLSGYPVA+R SW+ + FN++ S
Sbjct: 62 FTERGHIYLTVHVVEEVMSCLEVETGIQNT-NTLSGYPVANRRCSWESIRLFNRELHSSE 120
Query: 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 684
F ++D I+L++SVEDTG GIP EAQSR+FTPFMQVGPSI+R HGGTGIGLSI K L
Sbjct: 121 KSFAPIASDSISLVISVEDTGVGIPFEAQSRVFTPFMQVGPSIARIHGGTGIGLSIXKCL 180
Query: 685 VG 686
VG
Sbjct: 181 VG 182
>gi|406836202|ref|ZP_11095796.1| sensor protein [Schlesneria paludicola DSM 18645]
Length = 1992
Score = 245 bits (626), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 178/551 (32%), Positives = 269/551 (48%), Gaps = 86/551 (15%)
Query: 406 FQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT 465
+ T N + + EE + E K+ AE A AKSQFLAT+SHEIRTPMNG++GM D+ + T
Sbjct: 1448 LERTANELRRTEEK---LREAKEAAENASQAKSQFLATMSHEIRTPMNGIIGMTDLTLMT 1504
Query: 466 ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 525
Q Y+R + S +L+ L+N++LD +K+E+G+LELE++ F+LR + D + + S
Sbjct: 1505 RPTAQQTSYLRVVKQSADSLMRLLNDILDFSKIEAGRLELESIPFDLRETVSDAVRILSV 1564
Query: 526 KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 585
KS G+EL I+ VP + GD GR RQI+ NL+GN+IKFT +G +FV V
Sbjct: 1565 KSAQTGLELNYQIAPDVPLLVGGDAGRLRQILVNLVGNAIKFTAEGEVFVDV-------- 1616
Query: 586 SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 645
W + F D + L ++ DTG
Sbjct: 1617 --------------------------WTEERRF--------------DDVTLHFAIRDTG 1636
Query: 646 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 705
GI E + RIF F Q SI+R GGTG+GLSIS LV M G+I S GSTF
Sbjct: 1637 IGISEEQKDRIFASFSQADNSITRRFGGTGLGLSISSELVELMGGKIWVESELGHGSTFH 1696
Query: 706 FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 765
FTA + S+ + F + L+VD P V ++++G+Q
Sbjct: 1697 FTARLTLPVEAAASEKSRIV----------FPPVPVLIVDDHPTSRSVLTDTLEQMGLQP 1746
Query: 766 EVVSD--------QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817
+ V + + +SQ + +I+ ++ Q+ W +++ + GC
Sbjct: 1747 QAVHNAETAYLMMRYAVMSQTPTQLVLIDAMMPGQDGW----ALAEQIRRDPDLSGCPI- 1801
Query: 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV--GNKGNIRNWEL 875
+ + A+ + + + N + S KP + S LA ++Q A+ V GN G++R +
Sbjct: 1802 -LMLVPASHVYTEQQNEALR--SNTWYFTKPAKVSELADAIQEALSVSSGNDGSLREEAV 1858
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
+ +IL+VDD VN +VA L+ +G V G++A ELL FD
Sbjct: 1859 TTQQ------PMRILLVDDAPVNREVATGLLEMFGHHVQTATNGREAVELL-ESQAFDVV 1911
Query: 936 FMDIQMPEMDG 946
MD++MPEMDG
Sbjct: 1912 LMDLEMPEMDG 1922
>gi|196228199|ref|ZP_03127066.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
gi|196227602|gb|EDY22105.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
Length = 1248
Score = 245 bits (626), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 168/552 (30%), Positives = 264/552 (47%), Gaps = 72/552 (13%)
Query: 406 FQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT 465
++ TV I E + + + A + KS+FLA +SHEIRTPMNG++GM +L+DT
Sbjct: 569 YEGTVEDITARRETDDAIKKARDAALESARLKSEFLANMSHEIRTPMNGIIGMTGLLLDT 628
Query: 466 ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 525
EL Q+D+ +T +S AL+++IN++LD +K+E+G L E + F L +++ + L +
Sbjct: 629 ELSPKQRDFTQTISSSADALLTIINDILDFSKIEAGMLAFEEIDFQLGTVVEGSVELLAA 688
Query: 526 KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 585
++ + +ELA + VP L GDPGR RQ++TNL+GN++KFT+KG + V E
Sbjct: 689 RAASREIELASLVYHDVPTNLRGDPGRLRQVLTNLIGNAVKFTDKGEVVVRANCQE---- 744
Query: 586 SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 645
N + T+ + SV DTG
Sbjct: 745 ---------------------------------NAETHTT-----------IRFSVTDTG 760
Query: 646 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 705
GI EAQ R+F PF+Q S +R GGTG+GL+I K LV RM GEIG S GSTF
Sbjct: 761 IGISSEAQERLFQPFVQADGSTTRRFGGTGLGLAICKQLVARMGGEIGVTSEAGKGSTFW 820
Query: 706 FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 765
FTA F Q ++ + ++ + VD + + + G++
Sbjct: 821 FTARF----------EKQAGGGMAAPRPAKLKDVRVITVDDNDTNRAILHHLLSNWGMRE 870
Query: 766 EVVSDQLQCLS--QIASG-SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 822
+ + Q LS Q +G ++ ++ +++ ++ E D L + K F S +
Sbjct: 871 QQAASGKQALSILQAEAGRGRMFDLAILDMQMPEMD----GLELARAMKKDPRFASARIV 926
Query: 823 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG------NKGNIRNWELP 876
+ S+ + + + + KP++ S L L M G + E P
Sbjct: 927 MLTSVDRQEDPEALRETGVDAYLTKPVKQSQLYDCLSLVMSQDVETREIKSGLVALSEQP 986
Query: 877 SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACF 936
+ + +ILI +DN VN KVA L++ G VE G++A + L ++D F
Sbjct: 987 ASLPSEPIEKLRILIAEDNPVNQKVALYQLQKLGYMADVVENGRRALDAL-ARSRYDIVF 1045
Query: 937 MDIQMPEMDGYE 948
MD QMPE+DGYE
Sbjct: 1046 MDCQMPELDGYE 1057
Score = 41.6 bits (96), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP----HQFDACFMDIQMPE 943
+++ VDDN+ N + L +G GK+A +L FD +D+QMPE
Sbjct: 845 RVITVDDNDTNRAILHHLLSNWGMREQQAASGKQALSILQAEAGRGRMFDLAILDMQMPE 904
Query: 944 MDGYEM 949
MDG E+
Sbjct: 905 MDGLEL 910
>gi|343508478|ref|ZP_08745820.1| PAS domain-containing protein [Vibrio ichthyoenteri ATCC 700023]
gi|342793792|gb|EGU29580.1| PAS domain-containing protein [Vibrio ichthyoenteri ATCC 700023]
Length = 1803
Score = 245 bits (625), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 176/557 (31%), Positives = 274/557 (49%), Gaps = 67/557 (12%)
Query: 399 ASLVG-HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
A+L G +F V + +E +M K+KAE A AKS FLA +SHEIRTPMN ++G
Sbjct: 946 ATLAGEQLFTGIVRDATERKEAERELMLAKQKAEEATQAKSDFLANMSHEIRTPMNAIIG 1005
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
M + M T+L+ Q DYV Q S ++L+ +IN++LD +K+E+GKL+LE F+L + +D
Sbjct: 1006 MSYLAMQTQLNKKQADYVNKIQTSAESLLGIINDILDFSKIEAGKLDLEQTEFDLESTID 1065
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
+++ + S ++Q+K +EL V + ++P LIGDP R QI+ NL N+IKFT++G I V
Sbjct: 1066 NLVQVVSQRTQEKDLELLVDLDPQLPTHLIGDPLRLGQILLNLANNAIKFTDRGEIIVKA 1125
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 637
L+E D +E +S
Sbjct: 1126 ELIELGDDIVEARFSVS------------------------------------------- 1142
Query: 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697
DTG G+ E +R+F F Q S +R +GGTG+GL+ISK L M G I S
Sbjct: 1143 -----DTGIGMTQEQMARLFQSFSQADASTTRKYGGTGLGLTISKTLSEMMNGSIWVESE 1197
Query: 698 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 757
GSTF FTA FG S+E+ QQ+ P S+ QG+ L+VD ++
Sbjct: 1198 SGQGSTFFFTAQFG----ISSEYPQQQV-LPPQSM----QGVSVLIVDDSVAAREILFSL 1248
Query: 758 IQRLGIQVEVVSDQLQCLSQIASGS---KIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814
L +V + L +I + + ++IL + ++ + D + L++ G
Sbjct: 1249 CDSLNFTADVACSGAEALEKIQTAEQNQQKFDVILSDWKMPKMDGIELGRQIEALQERGE 1308
Query: 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM---GVGNKGNIR 871
+ F++ + V I + + KP+ SS L ++ R M G+ +K
Sbjct: 1309 IAAAPHFVMVTAYDKDEMLAQRQEVDIAASMTKPVSSSTLLDTVSRVMTKEGIASKTKAG 1368
Query: 872 NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 931
N S+ + + G ++L+V+DN +N ++A L G V G++A +L+
Sbjct: 1369 NK--LDTSIANGIAGARVLLVEDNAINQEIATELLHMVGVEVTAANNGQEAVDLV-EAQS 1425
Query: 932 FDACFMDIQMPEMDGYE 948
FD MDIQMP MDGY+
Sbjct: 1426 FDLVLMDIQMPVMDGYQ 1442
>gi|209523540|ref|ZP_03272094.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|423065813|ref|ZP_17054603.1| putative two-component hybrid sensor and regulator [Arthrospira
platensis C1]
gi|209495945|gb|EDZ96246.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|406712571|gb|EKD07755.1| putative two-component hybrid sensor and regulator [Arthrospira
platensis C1]
Length = 1355
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 197/632 (31%), Positives = 297/632 (46%), Gaps = 114/632 (18%)
Query: 344 PISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVG 403
PI +YG W + LN +PFR + K A W IG
Sbjct: 605 PIKVYGQVYGTLCFWSQNPLN--EPFRAVDQEL-LKLMAQW--------IG--------- 644
Query: 404 HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM 463
+ + R +E + + + +A AA AKS+FLAT+SHEIRTPMN V+GM +L+
Sbjct: 645 ----SEIERQQTAQE----LSQARDEALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLL 696
Query: 464 DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 523
DT L + QQD+V T ++S AL+SLIN++LD +K+ESGKL+LEA F+LR L++ L L
Sbjct: 697 DTPLSLVQQDFVETIRSSSDALLSLINDILDFSKIESGKLDLEAFPFSLRTCLEESLDLL 756
Query: 524 SGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 583
+ K+ K +EL +I P ++GD R RQI+ NL+ N++KFT +G + V+V
Sbjct: 757 ATKAASKSLELGYFIDAYTPNEVVGDMARVRQILVNLLSNAVKFTARGEVLVSV------ 810
Query: 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 643
S+K S + KS + + V+V D
Sbjct: 811 -----------SAKPLFSDLELT--------------------AKSMYSTHYQIEVAVSD 839
Query: 644 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS------- 696
TG GIP++ +R+F F QV S +R +GGTG+GL+IS+ L M G++ VS
Sbjct: 840 TGIGIPVDRMNRLFKSFSQVDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGDAIGGH 899
Query: 697 ----------IPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 746
P GSTF F+ V +SQ + Q N + E G + L++D
Sbjct: 900 PPENWQINKDTPTQGSTFYFSIVV---------QSSQNLLPQWNH-ADELAGKRLLIIDS 949
Query: 747 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFV 806
P ++ +Q G+ VE + ++ + G K ++ +VE E+ D F
Sbjct: 950 HPTNRQILTKQVQCWGLVVEDTDSPTEAIAWLKQG-KTFDIAIVEMEIANLD---GFNFA 1005
Query: 807 NNLRKLGCGFQSKLFLLANSISSSRAN-TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865
+R+ G L +L IS + N TD + + KP++ S L L + G
Sbjct: 1006 TQVRQTSAGVDLPLVML---ISVGQQNFNPTDHRDFVAFLNKPIKQSPLYNILINVL-CG 1061
Query: 866 NKGNIRNW---------ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCV 916
I+NW ++P ++ + L +IL+ +D+ VN KVA L+R G
Sbjct: 1062 EPLQIKNWSRNQMRSPQDIPLLAEK---LPLRILLAEDHLVNQKVALQILQRMGYRADVA 1118
Query: 917 ERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G + E L +D MD+QMP MDG E
Sbjct: 1119 GNGLEVLEAL-ERQPYDVILMDMQMPIMDGLE 1149
>gi|254417240|ref|ZP_05030985.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196176046|gb|EDX71065.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1359
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 197/647 (30%), Positives = 298/647 (46%), Gaps = 124/647 (19%)
Query: 313 DIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKH 372
D+ ++E + H LA + I+ N++ I H Y LW+ +
Sbjct: 644 DLHQVIEDINHHLAGQTQIYENIHRI---KHRDGHY--------LWIAT----------- 681
Query: 373 EMRC-RFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAE 431
+ RC R + P+ LVG I T +IA+ + + K++AE
Sbjct: 682 KGRCIRDRDGNPY---------------RLVGTITDITDKKIAQEQ-----LKAAKEEAE 721
Query: 432 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINE 491
A+ KS FLA +SHEIRTPMN V+GM +L+DT+L Q ++V + S AL+++IN+
Sbjct: 722 TANRTKSDFLAMMSHEIRTPMNAVIGMTSLLLDTQLTAQQGEFVDIIRNSSDALLTIIND 781
Query: 492 VLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG 551
+LD +K+ESGKL LE F+LRA +++ L L S K++DKG+ELA + ++PE+++GD
Sbjct: 782 ILDFSKIESGKLNLEEQPFDLRACIEESLELLSSKARDKGIELAYLMDSQIPESIVGDVT 841
Query: 552 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHS 611
R RQI+ NL+ N++KFTE G + ++V
Sbjct: 842 RLRQILVNLVSNAVKFTETGDVVISV---------------------------------- 867
Query: 612 WKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 671
+P S + I L +V DTG GI R+F PF QV S +R +
Sbjct: 868 -------------TPTAEISEEQIRLQFAVRDTGIGISRTRMDRLFKPFSQVDASTTRQY 914
Query: 672 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNS 731
GGTG+GL+IS+ L M G++ S +GSTF FT + SS S N +Q+
Sbjct: 915 GGTGLGLAISQRLSELMGGKMWVESEEGVGSTFYFTVIATPVSSDSEPDNREQV------ 968
Query: 732 VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVE 791
+ L+V+ ++ Q IQVE + + L + +G + IL
Sbjct: 969 ----LSDKRLLIVEDNSATRQMLTEQAQSFEIQVEATASTTEALGWLKTGKRFDIAILAS 1024
Query: 792 Q----EVWEKDTSVST-LFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
Q E W T + NL + G L+ + S +I +
Sbjct: 1025 QILQMENWSLITQIRQHPHCQNLPIIILG------LIGQVETHSDTGLPNPSRAIAGYLH 1078
Query: 847 KPLRSS----MLAASLQRAMGVGNKGNIRNWEL-PSMSLRHLLLGRKILIVDDNNVNLKV 901
KP++ S +L L + + V K + + P+ + + L KIL+ +DN VN KV
Sbjct: 1079 KPIKQSQLYNILVNILTQEVSVPRKTRSHSSKYDPTFAHKFPL---KILLAEDNVVNQKV 1135
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQ--FDACFMDIQMPEMDG 946
A LKR G V G E+L H+ +D MDIQMPEMDG
Sbjct: 1136 AVNMLKRLGYRPDSVANG---LEVLQALHRQSYDVVLMDIQMPEMDG 1179
>gi|167622660|ref|YP_001672954.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
HAW-EB4]
gi|167352682|gb|ABZ75295.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
HAW-EB4]
Length = 1761
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 177/572 (30%), Positives = 273/572 (47%), Gaps = 100/572 (17%)
Query: 408 ATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL 467
A + + ++ E+ + + K A+AA+ AKS FLA +SHEIRTPMN ++GM + + TEL
Sbjct: 1011 ANITSLKQLSEE---LKQAKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTEL 1067
Query: 468 DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKS 527
+ QQ+YV + K+L+ +IN++LD +K+E+GKL++E+V F L +L+D+ +FS K+
Sbjct: 1068 NRKQQNYVLKIDRASKSLLGIINDILDFSKIEAGKLDIESVPFQLDTLLEDLSDMFSVKA 1127
Query: 528 QDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 587
DK +EL ++ +P L GDP R Q++ NLM N+IKFTE+G + +++ +E + D
Sbjct: 1128 TDKRLELLFAVAPNIPRQLQGDPLRLSQVLINLMSNAIKFTEQGEVLLSISQLERIEDD- 1186
Query: 588 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 647
I L SV D G G
Sbjct: 1187 -----------------------------------------------IVLRFSVRDNGIG 1199
Query: 648 IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 707
+ E + R+F F Q S +R +GGTG+GL+ISK LV M GEIG S
Sbjct: 1200 LTEEQRERLFKSFSQADTSTTRKYGGTGLGLAISKQLVELMGGEIGVES----------- 1248
Query: 708 AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 767
FGNGSS + NNQ V E +GM+ LV D + R ++ +G +V+
Sbjct: 1249 -QFGNGSSFYFSVKLKVANNQLLKVKREIEGMRILVADDNATARDIMRTTLESMGFKVDA 1307
Query: 768 VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS- 826
V SG++ I + T ++ L G ++ +L+
Sbjct: 1308 VK----------SGAEAIEHC--------QHTDYPVALIDWLMPEMNGIEAAQKILSGKE 1349
Query: 827 ------ISSSRANTS----TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI-RNWEL 875
I S+ AN + I S I KP+ +S L + ++G + R
Sbjct: 1350 HPPKILIVSAHANAEFIEQVEHSDIASYITKPISASRLLDGIMSSLGQNGAMVVRRKGSD 1409
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
S L L G+++L+V+DN++N +VA L++ G + E G+ A E L FD
Sbjct: 1410 ISQELLLQLQGKRVLLVEDNDMNQEVATEFLEQVGVVLSIAENGQVALEKL-ATQSFDLV 1468
Query: 936 FMDIQMPEMDGYEM------LPCFESFLLIAI 961
MD QMP MDGY+ +P E +IA+
Sbjct: 1469 LMDCQMPVMDGYQATRELRKMPGLEKLPVIAM 1500
>gi|225159367|ref|ZP_03725663.1| Histidine kinase [Diplosphaera colitermitum TAV2]
gi|224802028|gb|EEG20304.1| Histidine kinase [Diplosphaera colitermitum TAV2]
Length = 678
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 169/554 (30%), Positives = 270/554 (48%), Gaps = 74/554 (13%)
Query: 406 FQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 462
F V + + E EL + +A A KSQFLA +SHEIRTPMNG++GM +L
Sbjct: 15 FCGYVGSVVDITERKRQEQELATARDQAVHASRLKSQFLANMSHEIRTPMNGIIGMSGLL 74
Query: 463 MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 522
+DT L Q+++ Q S +AL+++IN++LD +K+ESG+L ++ V F+LR +++D L+L
Sbjct: 75 LDTRLSPEQREFAEIVQKSAEALLAVINDILDFSKIESGRLNIDEVEFDLRTVVEDTLAL 134
Query: 523 FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 582
++ DK +EL +P L GDPGR RQIITNL+GN+IKFTE+G + VTV ++E
Sbjct: 135 LGERAIDKEIELTCEFPSGLPTALRGDPGRIRQIITNLVGNAIKFTERGEVSVTVTRIQE 194
Query: 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 642
NT ++ +SV
Sbjct: 195 T--------------NT----------------------------------TLHFRISVR 206
Query: 643 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 702
DTG G+ + + +F PF+Q S +R GGTG+GL+IS+ L+ M G IGF + P GS
Sbjct: 207 DTGIGVADDIKPHLFQPFVQADGSATRKFGGTGLGLAISRQLIEMMGGRIGFTTKPGRGS 266
Query: 703 TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF-QGMKALVVDPRPIRAKVSRYHIQRL 761
TF F + + P + + G + LVVD ++ ++++
Sbjct: 267 TFWFDLCL-----------PKLLEATPLPLQLDVPPGTRILVVDDSATNLRILDGQLRQM 315
Query: 762 GIQVEVVSDQLQCLSQIASGSKI---INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818
G+ VE +SD + L+++ S+ + ++++ + D +R +
Sbjct: 316 GLGVETLSDPTRTLARLHHASQTGSPFQIAILDRYMPVLD---GIELARRIRADSILQRM 372
Query: 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
K+ +L S S + + + ++KP R L SL R +G + +
Sbjct: 373 KVVML-TSASHLGELDRVRQLGLDAFLVKPTRQLQLRQSLARVLGAPITADGSSPHPDES 431
Query: 879 SLRHLLLGR----KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 934
R ++L ++L+V+DN +N KVA L+R G E G++A E+L H +
Sbjct: 432 DTRQIVLPDAHTPRVLVVEDNLINQKVAQRHLERLGHTCDVAEHGRRALEMLALHHDYAL 491
Query: 935 CFMDIQMPEMDGYE 948
MD QMP +DGYE
Sbjct: 492 ILMDCQMPVLDGYE 505
>gi|383789600|ref|YP_005474174.1| signal transduction histidine kinase [Spirochaeta africana DSM 8902]
gi|383106134|gb|AFG36467.1| signal transduction histidine kinase [Spirochaeta africana DSM 8902]
Length = 1509
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 178/531 (33%), Positives = 267/531 (50%), Gaps = 85/531 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
++ ++A+ AKSQFLA +SHEIRTPMNGV+GM +L+DT+L+ Q+ Y + SG+AL+
Sbjct: 853 NRQVQSANAAKSQFLANMSHEIRTPMNGVIGMTGLLLDTDLNPEQRRYAEAVRTSGEALL 912
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+LIN+VLD +K+E+GKLELE + FNL I+D+V + + ++ +K +EL + I + P L
Sbjct: 913 TLINDVLDFSKIEAGKLELEQLDFNLLNIVDEVCEMLAIRAHEKNLELILQIDPQTPWML 972
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP RFRQI+ NL+ N+IKFT +G + + +
Sbjct: 973 HGDPTRFRQILVNLVSNAIKFTHEGEVTLRI----------------------------- 1003
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+P S S I L V+DTG GIP E +F+PF Q+ S
Sbjct: 1004 ------------------TPVASDSG--IMLRCEVQDTGIGIPEERLGNLFSPFTQLDGS 1043
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+RT+GG+G+GLSISK LV + G+IG S P +GSTF FTA
Sbjct: 1044 TTRTYGGSGLGLSISKQLVRMLGGKIGVRSTPGVGSTFWFTAA-----------FHAAAT 1092
Query: 727 NQPNSVSSEFQGMKALVVDP--RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK- 783
+QP + G+ L++DP R RA V + ++ G+ +D LQ L +I
Sbjct: 1093 SQPQLDPAPLAGIHILIIDPNTRVRRALVGQ--LEHWGVICTEAADVLQALQRIRRDHDS 1150
Query: 784 --IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR-ANTSTDGVS 840
I +IL Q ++ + N LR+L + + I SR + + D
Sbjct: 1151 DIIYRIILAAQGLFSR---------NLLRQLHSAEPDARLVALSRIGRSRDSEHAVDIDP 1201
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KILIVDDNNVN 898
P + KP+R L ++L+ AM + P++ + G+ ++L+ +D +N
Sbjct: 1202 PPHRLDKPIRIRQLYSALRSAMEPDFDAPRQPTATPAVRTQR---GKPVRVLVAEDAPIN 1258
Query: 899 LKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFMDIQMPEMDGYE 948
VA A L++ G V G + T L P +D MD QMP MDGYE
Sbjct: 1259 QDVALAMLEKLGCRADAVANGAEVLTALETIP--YDLVLMDCQMPVMDGYE 1307
>gi|373458202|ref|ZP_09549969.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
DSM 13497]
gi|371719866|gb|EHO41637.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
DSM 13497]
Length = 748
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 167/534 (31%), Positives = 273/534 (51%), Gaps = 69/534 (12%)
Query: 424 MELKK---KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 480
+ELKK + E A+ AK +FLA +SHEIRTPMNG+LGM ++ ++T L Q+DY+ ++
Sbjct: 212 IELKKAKEETERANKAKDEFLANMSHEIRTPMNGILGMTELALETRLTAEQRDYLNVVKS 271
Query: 481 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 540
S +AL+++IN++LD +K+E+GKL+LE + FNL ++ D++ + KS +K +ELA +I
Sbjct: 272 SAEALLAIINDILDFSKIEAGKLDLEEIDFNLYDMIGDMIKPLAIKSNEKKIELAYFIDP 331
Query: 541 RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 600
VP + GDP R RQI+ NL+GN+IKFTEKG + + V E + D I ++
Sbjct: 332 DVPIFIKGDPIRLRQILINLLGNAIKFTEKGQVVLEVLKAERLDDKIILK---------- 381
Query: 601 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660
V DTG GIP E Q +IF F
Sbjct: 382 --------------------------------------FGVHDTGIGIPREVQDKIFESF 403
Query: 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS---TS 717
+Q SI+R GGTG+GL+I LV M G+I S ST+ G G+S T+
Sbjct: 404 VQADTSITRKFGGTGLGLAICMRLVRMMNGKIWLES----PSTYPSRKKGGPGTSFFFTA 459
Query: 718 NEHNSQQMNNQPNSV-SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS 776
H ++ P + +G+ L++D PI + +++ +QV + L
Sbjct: 460 QLHEAEHRETTPYRILQKNLKGLNVLLIDDNPINRSYFQKILEKNKLQVTTAESAFKAL- 518
Query: 777 QIASGSKIINMILVEQEVWEKDT-SVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 835
+I ++ ++I+ + ++ E D +ST +R L + + LL + S R ++
Sbjct: 519 EILKTNQRFDLIITDAQMPEMDGFELST----QIRALKNYKKVPIILLTS--SGMRGDSE 572
Query: 836 -TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDD 894
+ I + + KP++ + +LQ +G+ + ++ + ++R +L IL+ +D
Sbjct: 573 RCKQIGINAYLPKPVKLTDFLKALQVTLGLPQEEEVQPSLVTQYTVREVLPRLHILVAED 632
Query: 895 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
N VN K+A L++ G + G + E L H +D MD+QMPEMDG +
Sbjct: 633 NPVNQKLAIRLLEKNGYYADIAKNGLEVLEKLKKNH-YDLILMDVQMPEMDGLQ 685
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
P L+ L G +L++DDN +N L++ V E KA E+L +FD
Sbjct: 471 PYRILQKNLKGLNVLLIDDNPINRSYFQKILEKNKLQVTTAESAFKALEILKTNQRFDLI 530
Query: 936 FMDIQMPEMDGYEM 949
D QMPEMDG+E+
Sbjct: 531 ITDAQMPEMDGFEL 544
>gi|150017029|ref|YP_001309283.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
NCIMB 8052]
gi|149903494|gb|ABR34327.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
NCIMB 8052]
Length = 1083
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 163/561 (29%), Positives = 287/561 (51%), Gaps = 71/561 (12%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
KV+E + ++ K+ AE A++AKSQFLA +SHEIRTP+NG++G L +L T+LD TQQDY
Sbjct: 425 KVKERTNELIIAKEAAEDANMAKSQFLANMSHEIRTPLNGIVGFLSILEKTDLDSTQQDY 484
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
+ T Q S + L+ +IN++LD +K+E+G++E+E V+F++R++++ + L+ K+++KG+EL
Sbjct: 485 IETIQTSSETLLVVINDILDISKIEAGRMEIEKVAFDIRSVIESTIFLYDAKAREKGLEL 544
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I+ +P L+GDP + RQII+NL+ N++KFT G +F+ V +++E +++ E+
Sbjct: 545 NMLINSAIPSCLVGDPTKIRQIISNLVSNAVKFTHNGEVFIEVSVIKETNTEVQLYFEIR 604
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
+ ++ ++ K FK F+Q S+S
Sbjct: 605 DTGIGMNEEEIS------KLFKPFSQADSSS----------------------------- 629
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
+R +GGTG+GL+I K +V M G I S+ N G+TF F +
Sbjct: 630 -------------TRKYGGTGLGLAICKKIVEMMGGTISVKSVKNRGTTFCFDLLL---- 672
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 774
+ + Q + P S F+G + LV+D + +++ +++ +G ++
Sbjct: 673 ----DKSEQSVIQMPPDYSI-FKGKRILVIDDYEMNRYIAKVYLEEVGCMIDEAESLESA 727
Query: 775 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 834
LS + + K N IL++ ++ E V +++ G L LL + ++S A
Sbjct: 728 LSMLINNRKAYNTILIDYQMKE---ITGFELVEIMKERGLINDIPLILLTSVTANSEARI 784
Query: 835 STDGVSIPSVIMKPL-RSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KILI 891
+ + I KP R +L G G+K + + ++ + KIL+
Sbjct: 785 AKEN-KFSGYISKPYKRGDLLDCVAMVIKGDGSKIYNNDVFITKQNVEEAKYNKKIKILL 843
Query: 892 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE--- 948
V+DN++N+K LK G G KA + ++D FMD QMP MDGYE
Sbjct: 844 VEDNDINIKFFVNSLKLNGLTCDIAIDGAKALKAC-ENKEYDIIFMDCQMPVMDGYEATR 902
Query: 949 ---MLPCFESFLLIAILVWKL 966
+L +++ +IA+ + +
Sbjct: 903 KILLLRSYKNVPVIAMTAYSM 923
>gi|350551566|ref|ZP_08920780.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349796933|gb|EGZ50714.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1302
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 171/540 (31%), Positives = 261/540 (48%), Gaps = 70/540 (12%)
Query: 413 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 472
+ K EED + K++AE A+ KS+FLA +SHEIRTPMN ++G+ + MD+ LD QQ
Sbjct: 543 LKKTEED---LRLAKEQAEVANKVKSEFLANISHEIRTPMNAIIGLSRLGMDSRLDALQQ 599
Query: 473 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 532
Y+ AS + L+ L+++VLD +++E+G+L LE FNL +LDD+ +L K + K +
Sbjct: 600 TYLHEINASAETLLCLMDDVLDFSRIEAGQLTLEPTLFNLEDVLDDLWTLIRAKIRGKNL 659
Query: 533 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592
+L + +VP L GDP R +QI+ NL+GN+IKFTE+G I + +D I E E
Sbjct: 660 DLLFARNPQVPHQLQGDPLRLKQILNNLLGNAIKFTEQGEILL-------AIDVIHTEAE 712
Query: 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 652
L W F SV DTG GI E
Sbjct: 713 L-----------------IWLEF------------------------SVRDTGIGILPEQ 731
Query: 653 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712
Q +FTPF Q S +R GG+G+GLSI K LV M+G+I S P GS F F G
Sbjct: 732 QKELFTPFCQADNSSTRRFGGSGLGLSICKRLVDLMQGDIEVSSQPGQGSCFCFRIPLGL 791
Query: 713 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 772
+ T++E +++ QG+ LVVD P + + +++ + +V
Sbjct: 792 TAQTADE---------VWNLAPALQGLAVLVVDDNPRARDIFKMYLEEFALHPVLVDSAQ 842
Query: 773 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 832
+ L + S+ +IL++ ++ + + TL LR ++ L+A S
Sbjct: 843 RALETLQDRSQPFALILIDAKL--PNDAALTLIDTLLRTPPVHPLPQIILIAPHPSE--- 897
Query: 833 NTSTDGVSIP--SVIMKPLRSSMLAASLQRAMG--VGNKGNIRNWELPSMSLRHLLLGRK 888
+ D +P +V+ +P+ S L ++ ++ R P + G +
Sbjct: 898 DVPADLAPLPAYTVLAQPVTPSRLFDAIMTSLNDPAHVAAPHRQPTQPDPHDLQAIAGAR 957
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
IL+V+DN N VA A L+R V G++A L ++D MDIQMP MDG E
Sbjct: 958 ILLVEDNQTNQMVACAALRRANFVVDIANNGEEALAQLEQS-RYDCVLMDIQMPRMDGLE 1016
>gi|189347431|ref|YP_001943960.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
gi|189341578|gb|ACD90981.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
Length = 1397
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 185/553 (33%), Positives = 264/553 (47%), Gaps = 99/553 (17%)
Query: 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
+++ + AEAA+ AKS+FLA +SHEIRTPMNGV+GM +L++T L Q+ + +TA AS
Sbjct: 858 ALLDARLAAEAANRAKSEFLANMSHEIRTPMNGVIGMTRLLLNTSLAEEQRSFAQTALAS 917
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
G++L+++IN++LD +K+E+GKLELE +SF+LR +LDD ++ + K+ DKG+E
Sbjct: 918 GESLLTVINDILDFSKIEAGKLELEEISFDLRLLLDDFAAIMAVKAGDKGLEFICAALPD 977
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
VP IGDP R RQI+TNL GN++KFT KG + V V L+ E + + L
Sbjct: 978 VPVRFIGDPDRIRQILTNLAGNAVKFTHKGEVAVYVSLLRE------------TDEEVLV 1025
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+ V D TG GIP E R+F F
Sbjct: 1026 RFSVKD------------------------------------TGIGIPREKLDRLFRSFT 1049
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
QV S++R +GGTG+GL+IS+ LV M GEIG S IGS F FT S N
Sbjct: 1050 QVDASMTRKYGGTGLGLAISRQLVELMSGEIGVNSQSGIGSEFWFTL-----SLKKNIFP 1104
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV---SDQLQCLSQI 778
S+ +S++ G + LVVD + R + G++V V S ++ L Q
Sbjct: 1105 SENGQYPLDSIT----GTRLLVVDDNAENRNMLRMLLTSWGVRVSEVSCASTAIERLRQA 1160
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
A + +++ E+ E D L + K L+ NSI N
Sbjct: 1161 AEEGDPFRIAIIDMEMPEID----GLMLGRSIKDETALADTALLMMNSIGRRPDNEKLRR 1216
Query: 839 VSIPSVIMKPLRSSML-----------------AASLQRAMGVGNKGNIRNWELPSMSLR 881
S ++KP+R S L A SLQ + G S++L
Sbjct: 1217 SGFFSFLVKPVRQSELYNTVSEVLFSRDIDPCNAESLQEKLAAG-----------SVTLS 1265
Query: 882 HLLLGRK------ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
+ K IL+ +D+ VN V L + G V V G++A L +D
Sbjct: 1266 EAVDSEKNDSPVRILLAEDSAVNQLVVTGILSKLGYVVDPVFNGQEALARLR-EFAYDLV 1324
Query: 936 FMDIQMPEMDGYE 948
MDIQMPEMDG E
Sbjct: 1325 IMDIQMPEMDGLE 1337
>gi|393768134|ref|ZP_10356676.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
gi|392726527|gb|EIZ83850.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
Length = 678
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 169/524 (32%), Positives = 259/524 (49%), Gaps = 78/524 (14%)
Query: 428 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 487
++AEAA VAKS+FLATVSHE+RTP+NG+LGM D+++ T LD+ Q+ YV + SG+AL+
Sbjct: 166 ERAEAASVAKSRFLATVSHEMRTPLNGILGMADLVLGTNLDLEQRTYVEAVRTSGQALLG 225
Query: 488 LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 547
LI+ VLD +++E+G+L+L A F+L A+ + V+ L + ++QDKG+E+A+ +++ P L+
Sbjct: 226 LIDGVLDFSRIEAGRLDLAAEPFDLPALAESVVELLAPRAQDKGIEIALDVTESFPRGLV 285
Query: 548 GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 607
GD R RQI+ NL GN+IKFTE+G + V++
Sbjct: 286 GDADRVRQILINLAGNAIKFTERGGVGVSL------------------------------ 315
Query: 608 RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667
GF QDG + ++V DTG GIP + +F F Q S
Sbjct: 316 ------GFTPI-QDGGG-----------EVTLAVSDTGSGIPEDRLPILFEEFEQGDGSA 357
Query: 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 727
SR+H GTG+GL+I++ LV RM G I S GSTF E Q
Sbjct: 358 SRSHEGTGLGLAITRRLVTRMGGRIEADSRVGRGSTFRVVLPL-------PEAEGAQTGP 410
Query: 728 QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSKI 784
P +G + L+V P +A + R G +V D L LS A
Sbjct: 411 AP---LPRLEGRRCLIVADSPYQAPYLARSLSRAGAATVIVGTLEDGLDALSGAA----- 462
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
+ +L ++ + + +V + R GCG +S L LL S R +
Sbjct: 463 FDAVLADRALGD---AVVRQIADAAR--GCGIRSSLVLL--SPFDRRGFGAPGAAGFDGY 515
Query: 845 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAA 904
++KP+R+ L L + + + +P+ + G ++L+ +DN +N +A
Sbjct: 516 LIKPVRARSLFERL-----LAPPVAVESATIPAPAPARTGTGLRVLLAEDNPINALLATR 570
Query: 905 GLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L+R GA VV G +A E L FD +D++MP +DG+E
Sbjct: 571 ALERLGAEVVHAVDGVEALERLQSSGPFDLALIDVRMPRLDGHE 614
>gi|189424607|ref|YP_001951784.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
gi|189420866|gb|ACD95264.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
Length = 929
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 181/540 (33%), Positives = 265/540 (49%), Gaps = 78/540 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++AEA+ AKS+FLA +SHEIRTPMNG+LGM ++LMDTEL+ Q DY+R+ + S + L+
Sbjct: 272 KEQAEASSRAKSEFLANMSHEIRTPMNGILGMTELLMDTELNPQQFDYLRSVKVSAENLM 331
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN++LD +K+E G+LE EA+ F LR++L L S ++ KG+EL + +P+TL
Sbjct: 332 DIINDILDFSKIEVGRLETEAIPFMLRSMLGQTLRTLSVRAAQKGLELVFQVDPDLPDTL 391
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDPGR RQ++ NL GN++KFT++G + + V S + L G +
Sbjct: 392 IGDPGRLRQVLLNLAGNAVKFTDQGEVELLV-----------------SKQQELPGKELL 434
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
R V D G GI E Q RIF PF Q S
Sbjct: 435 LR------------------------------FEVRDRGIGISPEHQQRIFAPFEQADLS 464
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
++ +GGTG+GL+IS LV M GEIG S+ GSTF FT +H +QQ
Sbjct: 465 TTKKYGGTGLGLAISSRLVQLMGGEIGLESVAGQGSTFWFT--LRCQVQEQPQHEAQQ-- 520
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--ASGSKI 784
+ G ALVVD I ++ + R G+ V + S + A +
Sbjct: 521 ------TGTLSGYLALVVDDIAINRQLLERFLTRWGMDVLTAGSAEEAFSMLEYARSRRP 574
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
+ ++L + ++ + D V +R + KL LL ++ A + + +
Sbjct: 575 VQLLLTDLQMPDCD---GWGLVEQIRNDQRYDELKLVLLPSAGKRGDARRCRE-LKVNGY 630
Query: 845 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS--LRHLLLGRK----ILIVDDNNVN 898
+ KP+ S L +L K I E P S RH + + IL+VDD +N
Sbjct: 631 LTKPVIHSELYEAL--------KAIIHGKEQPGSSPVTRHHVREAQGSCSILLVDDVEIN 682
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLL 958
++A L++ G VV G +A + +FD FMDIQMP MDG+E SF L
Sbjct: 683 RELARIILEKRGHRVVQAANGLEAVD-AARKERFDLVFMDIQMPLMDGFEATNEIRSFEL 741
>gi|307151519|ref|YP_003886903.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
gi|306981747|gb|ADN13628.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
Length = 1426
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 180/529 (34%), Positives = 260/529 (49%), Gaps = 66/529 (12%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++AEAA+ AKS+F+A +SHEIRTPMNGV+GM +L+DT L Q+D V T + SG AL+
Sbjct: 771 KREAEAANKAKSEFVAMMSHEIRTPMNGVIGMTGILLDTPLSELQRDCVETIRNSGDALL 830
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN++LD +K+ESGKLELE FNLR ++ L L + K+ +KG+ELA PET+
Sbjct: 831 MIINDILDFSKIESGKLELEEQPFNLRESIESSLDLLAPKAAEKGLELAYIFDPNTPETI 890
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R RQI+ NL+GN IKFTEKG + V V S YP
Sbjct: 891 LGDVTRLRQILVNLIGNGIKFTEKGEVVVNV-----------------------SSYPQE 927
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
KSS+A + +V DTG GI E + ++F F QV S
Sbjct: 928 ---------------------KSSTAPTYTIEFAVTDTGIGIAPERKDKLFKAFSQVDSS 966
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL ISK L M GEI S GSTF FT T+ +S +
Sbjct: 967 TTRQYGGTGLGLVISKRLTQLMGGEISVDSQQGKGSTFKFTI-------TAEAFHSSTLA 1019
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+ + + + L+VD K+ Q G+ V + + IA G + +
Sbjct: 1020 WE-KYIITHLANKRVLIVDDNQTNRKILILQTQSWGMIPTAVDSGQKAIEIIAQG-ETFD 1077
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+ +++ ++ D + LR+ G L LL++ + V S +
Sbjct: 1078 LAILDMQMPSLD---GVMLAQILRQYPSGKNLPLILLSS--AGQLLPIERLKVDFSSTLS 1132
Query: 847 KPLRSSMLAASLQRAMGVGNKGNIRNWELP---SMSLRHLLLGR----KILIVDDNNVNL 899
KP+ + L +L +A+ K + +P S+ ++ LG+ +ILI +DN VN
Sbjct: 1133 KPIHQTQLYNALVQALQTQTKITLDRPSVPENGSILSKYKDLGQQHPLRILIGEDNAVNQ 1192
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
KV L+R V G + + L +D MDIQMPEMDG E
Sbjct: 1193 KVIQQILQRMSYRADLVANGLEVIQAL-KLQSYDVVLMDIQMPEMDGLE 1240
>gi|428215970|ref|YP_007089114.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428004351|gb|AFY85194.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1277
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 186/582 (31%), Positives = 285/582 (48%), Gaps = 58/582 (9%)
Query: 386 LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 445
L A++ +GI + S + +A +++A E + + ++ AE A+ AKS+FLAT+S
Sbjct: 672 LEAVAVQLGIALAQSQLLERERAARSQLA---EQNQSLKQARESAEVANRAKSEFLATMS 728
Query: 446 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505
HEIRTPMN V+GM +L+D L Q+DY+ T + SG AL+++IN++LD +K+ESGKLEL
Sbjct: 729 HEIRTPMNAVIGMTGLLLDMNLTEEQRDYIDTIRTSGDALLTIINDILDFSKIESGKLEL 788
Query: 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 565
E FNL+ +++ L LF+ K+ +KG+EL I R P+ +I D R RQI+ NL+GNS+
Sbjct: 789 ENHPFNLQTCIEEALDLFAPKAAEKGLELLYQIEVRTPQKIISDVTRLRQILVNLIGNSV 848
Query: 566 KFTEKGHIFVTVYLVE--EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 623
KFT G I V+V ++ T L S+ P G + + D
Sbjct: 849 KFTHTGEIVVSVNATRLTSPTSQAKLATPLVSADPGNGDKP--------SGLQPRSPD-- 898
Query: 624 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKY 683
S S+ DTG GIP + R+F PF QV S +R GGTG+GL+I K
Sbjct: 899 -----QSPPVAYEFQFSIRDTGIGIPSHRRDRLFLPFSQVDASTTRQFGGTGLGLAICKR 953
Query: 684 LVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALV 743
L M G + S +GSTF FT + + ++ + Q S S +G K L+
Sbjct: 954 LSELMGGRMWIESEEGVGSTFYFTLIALSNPKANHSPDYHQ------SDRSLLKGKKLLI 1007
Query: 744 VDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVST 803
VD ++ Q G+ Q ASGS+ ++++ V D ++
Sbjct: 1008 VDDNATNRQILLKQTQNWGM----------FPHQAASGSEALDLLEVSNHF---DLAILD 1054
Query: 804 LFVNNLRKLGCG--------FQSKLFLLANSISSSRANTSTDGVSI--PSVIMKPLRSSM 853
+ + + L +QS ++ S+ + DG+SI + I KP++ S
Sbjct: 1055 MQMPEMDGLTLAARIQSQPQWQSLPLVMFTSMGKPES-LEVDGISIKFAAFINKPIKQSQ 1113
Query: 854 LAASLQRAMGVGNKGNIRNWELPSMSLRHLL-------LGRKILIVDDNNVNLKVAAAGL 906
L +L + + + +E S + L+ + +IL+ +DN VN KVA L
Sbjct: 1114 LYNTLIQILDETPPSSPVKYEPLPQSKKSLINADMAKQIPLRILLAEDNIVNQKVALRIL 1173
Query: 907 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
R G G + E L +D MD+QMPEMDG E
Sbjct: 1174 DRMGYRADVANNGLEVLEALQ-RLSYDVILMDVQMPEMDGLE 1214
>gi|46201520|ref|ZP_00054895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 1099
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 202/723 (27%), Positives = 326/723 (45%), Gaps = 111/723 (15%)
Query: 266 LTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQL 325
+ P R L+ N V +K + + E IEA D +IE L E+ L
Sbjct: 276 MDGPGRFLRVNGKPVFDPSGEFKGYRGTASDITEEIEAADRLKASQAEIERLAERNNSIL 335
Query: 326 AS-----------KQTIFVNVYDITNLS-HPISMYGSNV---------SDDGLWLVSTLN 364
S + FVN L P + GS++ + + L+ + L
Sbjct: 336 ESVDDGIVGIDLNGRATFVNRAAAKLLDFEPAELVGSDILPLMALDMETAESLYQI-LLR 394
Query: 365 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIF---QATVNRIAKVEEDYH 421
D R + + +P P+ I++ + + + VG + T R+ + +
Sbjct: 395 LADSIRDDTASFKRRDGSPLPVEYIASPV--MDKGNQVGVVLGFRDITQRRLVERQ---- 448
Query: 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
+ E K+ AEA + KS+FLAT+SHEIRTPMNGV+GM +L+DT+L Q+ + T + S
Sbjct: 449 -LREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTKLTEEQRHFAETIRDS 507
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
G++L+++IN++LD +K+E+GKL+L+ F L +++ V+ + + ++ KG+E+A I R
Sbjct: 508 GESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPR 567
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+ + DPGR RQ++ NL GN++KFTEKG + + V L+E
Sbjct: 568 LRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVTLLE-------------------- 607
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+ + +++ V DTG GIP EAQ R+F+ FM
Sbjct: 608 --------------------------RPGAQPMVHF--DVRDTGIGIPPEAQGRLFSMFM 639
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
QV S +R +GGTG+GL+I + L M GE+G S P GS F S E
Sbjct: 640 QVDASTARRYGGTGLGLAICRRLAELMGGEVGLESQPGKGSRFWM--------SVPMELL 691
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
+ Q P+ G + LVVD P+ V ++ G++V D + ++
Sbjct: 692 APQSAAPPD-----LTGHRVLVVDDNPVNCDVIERQLRAFGVEVHACLDAGSGMGELTRA 746
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG-VS 840
+ + V + + V +R + S++ + + S DG +
Sbjct: 747 AAMGTPWEVAVIDSQMPVVTGSEMVRMMRAIPMLGGSRIIVTS---SQGMPAEQQDGQPA 803
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNK-----GNIRNWELPSMSLRHLLLGRKILIVDDN 895
I + + KPLR S L ++ R +G+ P + + L +IL+ +DN
Sbjct: 804 IDAFLHKPLRQSTLLDTIGRVLGLSGPEEQPAAPAEEHNAPDSTAKRL----RILVAEDN 859
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATEL--LMPPHQFDACFMDIQMPEMDGYEMLPCF 953
VN +VA L++ G V V G +A E L+P +D MD+QMPEMDG E
Sbjct: 860 PVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLP---YDVVLMDVQMPEMDGLEATRAI 916
Query: 954 ESF 956
S
Sbjct: 917 RSL 919
>gi|254410456|ref|ZP_05024235.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196182662|gb|EDX77647.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 2020
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 186/575 (32%), Positives = 293/575 (50%), Gaps = 35/575 (6%)
Query: 386 LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 445
L A++ +GI + + + + R ++ + + K++AE A+ AKS+FLA +S
Sbjct: 1263 LEAVAAQVGIALAQA---QLLEQEKQRREELTLKNLALHKAKREAEVANRAKSEFLAMMS 1319
Query: 446 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505
HEIRTPMN V+GM +L+DTEL QQD+ T +SG+AL+++IN++LD +K+ESGKLEL
Sbjct: 1320 HEIRTPMNAVIGMAGLLLDTELTSQQQDFANTISSSGEALLTIINDILDFSKIESGKLEL 1379
Query: 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI--------SDRVPETLIGDPGRFRQII 557
E F++ +++ L L + ++ KG+ELA I + P T++GD R RQI+
Sbjct: 1380 EEHPFDVHVCIEEALDLVASQATAKGLELAYLIEPFGFAQGQPQTPATVVGDITRLRQIL 1439
Query: 558 TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 617
NL+ N++KFTE+G + V+V + ++ E + G A+ G
Sbjct: 1440 VNLLSNAVKFTERGEVVVSV-----ISRALSGEAGGAEGAEGAEGAEGAEGAEGAGGAGG 1494
Query: 618 FNQDGSTSPFKSSSAD-LINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
G P + A+ L +V DTG GIP + +R+F PF QV S++R +GGTG+
Sbjct: 1495 AEGAGGAVPVEHLEAEQTYELQFTVRDTGIGIPRDRMNRLFKPFSQVDASMTRNYGGTGL 1554
Query: 677 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 736
GL+ISK L RM G + S GSTF FT V S N ++ QP E
Sbjct: 1555 GLAISKRLSERMGGRLWAESEVGKGSTFYFTIVV---KSDPNSVTAELDTPQP-----EL 1606
Query: 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE 796
+G + LVVD ++ Q G++V + Q L+ +A S+ ++ +++ ++ E
Sbjct: 1607 RGKRLLVVDDNATNRQIITLQAQSWGMEVTTAASGEQALNWLAD-SEPFDLAVLDWQMPE 1665
Query: 797 KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAA 856
D L ++ L Q L +L+ S+ D + + + KP++ S L
Sbjct: 1666 MDGLTLAL---QIQALPNNEQLPLVMLS-SVGRQTPYQPDDMPNFAAFLTKPIKQSQLYN 1721
Query: 857 SLQRAMGVGNKGNIRNWELPSMSLRHLLLGR---KILIVDDNNVNLKVAAAGLKRYGAAV 913
+G + ++R + S +L R IL+V+D VN KVA L+R G
Sbjct: 1722 IFVTILG-RRRISVRPGDRLSGTLEAEFAQRLPLSILLVEDVAVNQKVARQMLQRLGYRA 1780
Query: 914 VCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G++A E L + FMD+QMPEMDG E
Sbjct: 1781 DVANNGQEALESLR-RKSYQVVFMDVQMPEMDGLE 1814
>gi|157960457|ref|YP_001500491.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
700345]
gi|157845457|gb|ABV85956.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
700345]
Length = 1765
Score = 243 bits (619), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 172/554 (31%), Positives = 265/554 (47%), Gaps = 89/554 (16%)
Query: 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
+ + K A+AA+ AKS FLA +SHEIRTPMN ++GM + + TELD QQ+Y++ +
Sbjct: 1022 ALKQAKDSADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDAKQQNYIQKIDRA 1081
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K+L+ +IN++LD +K+E+GKL++E+V F L +L+D+ +FS K+ DK +EL ++
Sbjct: 1082 SKSLLGIINDILDFSKIEAGKLDIESVDFQLDTLLEDLSDMFSVKASDKRLELLFAVAPN 1141
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P L+GDP R Q++ NLM N+IKFTE+G + +++ +E V D I
Sbjct: 1142 IPRHLLGDPLRLSQVLINLMNNAIKFTEQGEVLLSISQLERVEDDIV------------- 1188
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
L SV D G G+ E ++R+F F
Sbjct: 1189 -----------------------------------LRFSVRDNGIGLTEEQRNRLFKSFS 1213
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q S +R +GGTG+GL+ISK LV M GEIG S GSTF F+
Sbjct: 1214 QADTSTTRKYGGTGLGLAISKQLVELMGGEIGVESQFGNGSTFFFSVRL----------- 1262
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV---SDQLQCLSQI 778
+ +N+ V E +GM+ LV D + R ++ +G V+ V SD ++
Sbjct: 1263 -KVADNKLLKVKHEIEGMRILVADDNATARDILRTTLESMGFVVDAVKSGSDAIERCQHT 1321
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS--- 835
+I+ + E +N L F + I S+ AN
Sbjct: 1322 HYPVALIDWQMPE--------------MNGLEAAEVIFAEQETPPKVLIVSAHANAEFLE 1367
Query: 836 -TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP-SMSLRHLLLGRKILIVD 893
+ I I KP+ +S L + ++G +R S L L G++IL+V+
Sbjct: 1368 QIERSGIAGYITKPISASRLLDGIMSSLGKNGTMAVRRQGADISQELLGQLQGKRILLVE 1427
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEM---- 949
DN++N +VA L++ G + + G+ A E L FD MD QMP MDGY+
Sbjct: 1428 DNDMNQEVATEFLEQVGVVLSIADNGQIALEKL-AMQSFDLVLMDCQMPVMDGYQATREL 1486
Query: 950 --LPCFESFLLIAI 961
LP + +IA+
Sbjct: 1487 RKLPGLANLPVIAM 1500
>gi|298529159|ref|ZP_07016562.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510595|gb|EFI34498.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1547
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 173/529 (32%), Positives = 268/529 (50%), Gaps = 70/529 (13%)
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
+A+AA AKS+FLA +SHEIRTPMNGV+GM +L++T+L+ TQ+ Y T ++SG+AL++L
Sbjct: 834 QADAASRAKSEFLANMSHEIRTPMNGVIGMTGLLLETDLNETQRRYAETVRSSGQALLAL 893
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
+N++LD +K+ESGKLELEA++F+LR LD+ S+ + K+++KG+E VP+ LIG
Sbjct: 894 LNDILDFSKIESGKLELEALNFDLRDTLDNFASMMAFKAEEKGLEFICSADPDVPDNLIG 953
Query: 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
DPGR RQI+TNL+GN++KFTE+G + V V + E V S E
Sbjct: 954 DPGRIRQILTNLVGNAVKFTERGEVVVRVSIQESGVRSQE-------------------- 993
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
S + L SV DTG GIP + +F F QV SI+
Sbjct: 994 ----------------------SQEFCMLHFSVRDTGIGIPADKVGDLFQSFSQVDASIT 1031
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 728
R GGTG+GL+ISK L M G++G S+ G+TF FT + E
Sbjct: 1032 RKFGGTGLGLAISKQLAEMMGGDVGVDSVEGQGTTFWFTIRLALAGTAEAEV-------- 1083
Query: 729 PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---SKII 785
V ++ ++AL+VD ++ + G++ + D L ++ +
Sbjct: 1084 --PVPADLLDVRALIVDDNATNREILMTRLLGWGMRPDEAKDGPTALGRLYTALAEDDPY 1141
Query: 786 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 845
++ +++ ++ D + +KL +L +++++ A D + + +
Sbjct: 1142 HLAIIDMQMPGMDGEFLGRTIRADQKLQ---DVRLVMMSSAGMQGDARRMKD-IWFAAFL 1197
Query: 846 MKPLRSSMLAASLQRAMGVGNKGNI----RNWELPSMSLRHLLLGRK--ILIVDDNNVNL 899
KPLR L L M ++ E S S + RK IL+ +DN N
Sbjct: 1198 AKPLRHDELFDCLSLVMAGDEPQDLVTRHSAREEKSRSGKIDFSDRKARILLAEDNITNQ 1257
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
+VA A LK +G + V G +A + L +P +D MD+QM EMDG
Sbjct: 1258 QVALAMLKNFGLSADAVANGLEAIKALKTVP---YDLVLMDVQMLEMDG 1303
>gi|334343013|ref|YP_004555617.1| integral membrane sensor hybrid histidine kinase [Sphingobium
chlorophenolicum L-1]
gi|334103688|gb|AEG51111.1| integral membrane sensor hybrid histidine kinase [Sphingobium
chlorophenolicum L-1]
Length = 914
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 168/541 (31%), Positives = 258/541 (47%), Gaps = 69/541 (12%)
Query: 411 NRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT 470
R ++EE + K +AE A AKSQFLA +SHEIRTPMNGV+G ++L DT L+ +
Sbjct: 367 ERTIQLEESETELRAAKNRAEEATRAKSQFLANMSHEIRTPMNGVIGAAELLNDTRLNAS 426
Query: 471 QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDK 530
Q++Y+ S AL+ LIN++LD +K+E+G+LELE V+F+LR L D L F+G++ +K
Sbjct: 427 QREYLTMITQSADALLHLINDILDFSKIEAGRLELEHVAFSLRDELADTLQAFAGRATEK 486
Query: 531 GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 590
G+ELA +++ VP+ L GDP R RQ++ NL+GN+++FTE+G + + V VE + D
Sbjct: 487 GIELACHVALDVPDALEGDPHRLRQVVINLVGNALRFTERGEVVMDVA-VERMEDQ---- 541
Query: 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 650
+W F +V DTG GI
Sbjct: 542 -------------------QAWLRF------------------------AVSDTGPGIAA 558
Query: 651 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710
+ + IF F Q S +R GGTG+GL+I+ LV M G + S GS F FT F
Sbjct: 559 DKRKLIFEAFSQADTSFTRRFGGTGLGLTIASQLVQLMGGRLELDSCVGRGSVFHFTIAF 618
Query: 711 GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEV 767
+Q P + G+ L+VD ++ I+ G++ VE
Sbjct: 619 A---------LAQGETPHPPAEQPSLHGLPVLIVDDNATNRRILDEMIRGWGMKPLAVES 669
Query: 768 VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
L L A + + ++L++ + + D V G G + ++ +S
Sbjct: 670 GPKALAALRNAAGIGRPLRLVLLDMMMPDMD----GFAVAKEIARGGGDERPAVIMLSSA 725
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I + ++KP+R S L ++ + V +R P H
Sbjct: 726 QKDEMARRNWATGIAAFLLKPVRQSELLEAIFAVLKV----TVREETAPPQPAPHDRPSL 781
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
+L+ +DN VN ++A L++ G V V G +A E L FD MD+QMPEMDG+
Sbjct: 782 HVLVAEDNAVNQRLALRLLEKRGHRVKIVGDGAQAVEALA-QDSFDVVLMDVQMPEMDGF 840
Query: 948 E 948
+
Sbjct: 841 Q 841
>gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 992
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 174/534 (32%), Positives = 264/534 (49%), Gaps = 85/534 (15%)
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
+ ++ AE A+ AK+ FLAT+SHEIRTPMNGV+GM +L+DT+LD Q+ + T + S ++
Sbjct: 346 QAQQVAERANQAKAAFLATMSHEIRTPMNGVIGMTGLLLDTQLDPEQRHFATTIRDSAES 405
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L+++IN++LD +K+E+GKL+LE+ F L +++ ++ + + ++ KG+E+A + +P
Sbjct: 406 LLTVINDILDFSKLEAGKLDLESTDFELVGLVESIVDILAPRAHAKGIEIASMVDPDLPA 465
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 604
+ GDPGR RQI+ NL GN+IKFT G I SIEV E S
Sbjct: 466 WVRGDPGRLRQILMNLAGNAIKFTSHGGI------------SIEVRDETSP--------- 504
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
DG+ L V DTG GIP +A R+F+ FMQV
Sbjct: 505 ----------------DGAG-----------RLRFDVRDTGIGIPQDAIGRLFSMFMQVD 537
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
S +R +GGTG+GL+ISK L M G IG S P GS F F+ F Q
Sbjct: 538 ASTARRYGGTGLGLAISKRLTEMMGGTIGVESTPGAGSLFWFSLPF-------------Q 584
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 784
M + G + LVVD PI V ++ G+ V +D L+++ +
Sbjct: 585 MVETAPPQRPDLAGRRILVVDDSPINRDVLERQLRGFGVIVASCADAESALAELGRAAAT 644
Query: 785 INMILVEQEVWEK---DTSVSTLFVNNLRKLG-CGFQSKLFLLANSISSSRANTSTDG-V 839
WE D + + ++L +G + L + I+SS+ + DG
Sbjct: 645 -------GTPWEAAIIDARMPGVTGSDL--IGRIRAEPVLAPMGLIIASSQGLSPEDGSP 695
Query: 840 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-----ELPSMSLRHLLLGRKILIVDD 894
+ I KPLR + A L R +G+ + +++ E R L +IL+ +D
Sbjct: 696 KADAFIHKPLRRQTILAVLARVLGLPHDPGLQDSPESEPEAIPRPARRL----RILVAED 751
Query: 895 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
N VN +VA L++ G +V G +A E + +D MD+QMPEMDG +
Sbjct: 752 NPVNQQVAVGLLRKLGHSVDVAADGAEAVEAVR-SRPYDLVLMDVQMPEMDGLQ 804
>gi|224371576|ref|YP_002605740.1| BarA [Desulfobacterium autotrophicum HRM2]
gi|223694293|gb|ACN17576.1| BarA [Desulfobacterium autotrophicum HRM2]
Length = 941
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 176/588 (29%), Positives = 293/588 (49%), Gaps = 77/588 (13%)
Query: 370 RKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKK 429
+ + +R + K K + LLA + + I H+ + NR A+++ + L +
Sbjct: 207 KNYRLRVKHKSKDEFGLLAEGFNNMLGQIQQRDEHLEEQVRNRTAELQLTMDKAIVLADE 266
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489
A+AA AKSQFLA +SHEIRTPMNGVLGM +M +D L + QQ+ + T ++SG++L+++I
Sbjct: 267 AQAASKAKSQFLANMSHEIRTPMNGVLGMAEMALDMNLTLEQQNAIETIKSSGESLLTII 326
Query: 490 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 549
N++LD +K+E+GKLE+E ++FNL A+++++ + + ++ KG+EL V I++ + + D
Sbjct: 327 NDILDFSKIEAGKLEIETINFNLPALIEEIAQILAHRAHAKGLELIVDIAETLHPDMSSD 386
Query: 550 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 609
P R RQ++TNL+ N+IKFTE+G +++ V ++++ DS +V
Sbjct: 387 PSRIRQVLTNLLSNAIKFTEQGEVYLKVESLKDMGDSEQVR------------------- 427
Query: 610 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669
V DTG G+ E + ++F PF Q S +R
Sbjct: 428 -----------------------------FLVRDTGIGMTAEERKKLFQPFSQADESTTR 458
Query: 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 729
+GGTG+GL+IS+ LV M G+I P G+ F F + T + + P
Sbjct: 459 KYGGTGLGLAISRQLVELMDGQINCTGNPGEGAEFWFDLTLKKTAGT------RILAQTP 512
Query: 730 NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS---QIASGSKIIN 786
+ E +G+ ALVVD ++ + + GI+ E D L+ L+ + + +
Sbjct: 513 ---TQELKGLSALVVDDNQTNRELLTHQMNSWGIKQEGAEDGLKGLTILHRAVEEKRPFD 569
Query: 787 MILVEQEVWEKD-TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD-GVSIPSV 844
M+L++ + D V+ L +RK ++K+ +L + A + + G++I
Sbjct: 570 MVLLDMHMPHMDGLDVARL----IRKDPTLERTKIIILTSVGIRGDAQLAREAGINI--Y 623
Query: 845 IMKPLRSSMLAASLQRAMGVGN----KGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
+ KP+R L SL M GN K I + L ++L+ +DN +N +
Sbjct: 624 LTKPVRQVDLYNSLVELMN-GNYLEKKDLITQYHLKK---ELTTFNARVLLAEDNIINQQ 679
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VA L + G V G +A +D FMD QMP MDGYE
Sbjct: 680 VAKGVLCKLGCRVELATNGLEAVS-AAQKESYDIVFMDCQMPRMDGYE 726
>gi|309790815|ref|ZP_07685359.1| PAS fold family protein [Oscillochloris trichoides DG-6]
gi|308227102|gb|EFO80786.1| PAS fold family protein [Oscillochloris trichoides DG6]
Length = 1149
Score = 242 bits (618), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 171/532 (32%), Positives = 266/532 (50%), Gaps = 76/532 (14%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
++E K+ AE A A+S+FLA +SHEIRTPMNGV+GM +L+DT L+ Q++Y T ++SG
Sbjct: 500 LIEAKEAAEHATRARSEFLANMSHEIRTPMNGVIGMTGLLLDTPLNERQREYAETIRSSG 559
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
++L+++IN++LD +K+ESG++ELE F ++ ++ L L + + KG++LA I+ V
Sbjct: 560 ESLLTIINDILDLSKIESGRMELEQQPFEIQECVESALDLVAPTAFAKGLDLAYLIAADV 619
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P LI D R RQI+ NL+GN++KFTE G + + V S
Sbjct: 620 PMMLISDVTRLRQILVNLLGNAVKFTEHGEVTLQV-----------------------SR 656
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
YP D AD ++L++ V DTG GIP + R+F F Q
Sbjct: 657 YPDFDL----------------------EADQVHLVIEVRDTGIGIPPDKLDRLFRAFSQ 694
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +RT+GGTG+GL I K L + G I S P GSTF + G GS
Sbjct: 695 VDASTTRTYGGTGLGLVICKRLSEMLGGGISVESAPGQGSTFRVEMLAGVGSEEDM---- 750
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
++ + G + L+V+P P R ++ + G+ V ++ + L I +G
Sbjct: 751 -------YALDMDLAGRQILIVEPNPTRREMLSHAASGWGMSVYPLAVAQEALDLIVAGG 803
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
++ L++ + + + TL LR+ G + L IS T +I
Sbjct: 804 S-FDLALLDATLVDAYGTPLTL---ALRRFPAGVDLPVVL----ISDLNTKQQTLPPNIA 855
Query: 843 SVIMKPLRSSMLAASLQRAMGV------GNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 896
+ KP++ +L +L A+G + ++ +P RH L +IL+ +DN
Sbjct: 856 WHLRKPIKRRLLYRALLAAVGAMEGMEYAQEPQVQPEPVPDE--RHSL---RILLAEDNA 910
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VN +VA L+R G V G +A E + H +D MD+QMPE+DG E
Sbjct: 911 VNQRVALRTLERLGYRADVVGNGLEAIEAIARQH-YDVVLMDVQMPELDGLE 961
>gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Coleofasciculus
chthonoplastes PCC 7420]
gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Coleofasciculus
chthonoplastes PCC 7420]
Length = 684
Score = 242 bits (618), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 175/515 (33%), Positives = 259/515 (50%), Gaps = 58/515 (11%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KS+FLAT+SHEIRTP+N V+G+ +L +T+LD QQD V T + SG+ L+ IN+VLD A
Sbjct: 158 KSEFLATMSHEIRTPLNAVIGLTGILENTKLDAHQQDLVETIRQSGETLLITINDVLDFA 217
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+ESGKLELE FNLR L+ + LF+ K+ KG+EL +I VP TL+GD R RQI
Sbjct: 218 KIESGKLELEFKPFNLRDCLETAVDLFAPKAVQKGLELTYFIDPEVPSTLVGDVTRLRQI 277
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+ NL+ N+IKFT+ G + V S++VE H +
Sbjct: 278 LINLLSNAIKFTDVGEVSV----------SVKVE-------------------HCYVTNS 308
Query: 617 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
T NQD TSP + ++ SV+DTG GIP + +R+F F Q+ S +R +GGTG+
Sbjct: 309 TQNQDSHTSP-------TVCILFSVKDTGIGIPKDRFNRLFQRFSQLDSSTTRQYGGTGL 361
Query: 677 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 736
GL ISK L M GEI S GSTF+F V S +PN ++ +
Sbjct: 362 GLIISKQLSEMMGGEIWVDSTLGEGSTFSFCVVLSVDQDAS----------EPNLITPQP 411
Query: 737 Q--GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEV 794
Q G + L++D P ++ Q G+ + L+ + + + ++ ++++++
Sbjct: 412 QLAGKRVLIIDDNPTSCQILTQQTQCWGMIARSTQSGNEALAWL-NQKEAFDVAIIDRQM 470
Query: 795 WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML 854
E + L ++N GF+ +L I TS + + KP++ L
Sbjct: 471 PEMNGLTLGLQIHN----QSGFKELPLVLLTPIGKMTTKTSLIERHFAACLPKPIKLGQL 526
Query: 855 AASLQRAMG---VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGA 911
+L + +G K + E L L R IL+ +DN VN KV LKR G
Sbjct: 527 YNTLTQVLGRQATAIKSQPASPESGDSPLAQQLPLR-ILLAEDNIVNQKVELLLLKRLGY 585
Query: 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
V G++ + + +D MD+QMPEMDG
Sbjct: 586 QADLVSNGQEVLDAI-SRQSYDVILMDVQMPEMDG 619
Score = 43.5 bits (101), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM--PPHQFDACFMDIQMPEMDG 946
ILIVDD NL++ L G V V GK+A + PP D +DI+MPEMDG
Sbjct: 13 ILIVDDIPDNLRILFTMLANQGYEVRRVISGKQALNAVNTDPP---DLILLDIKMPEMDG 69
Query: 947 YEM 949
YE+
Sbjct: 70 YEV 72
>gi|359459602|ref|ZP_09248165.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris sp. CCMEE 5410]
Length = 1582
Score = 242 bits (618), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 179/574 (31%), Positives = 287/574 (50%), Gaps = 77/574 (13%)
Query: 389 ISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEI 448
I G + IA GH+ + + + ++ + + +K A+AA+VAKS+FLAT+SHEI
Sbjct: 1000 IEAVAGQVGIALAHGHLLEQEQQQRQTLTQNNTALKQARKDADAANVAKSEFLATMSHEI 1059
Query: 449 RTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 508
RTPMN V+GM +L++T LD Q+D+V T ++SG AL++LIN++LD +K+E+GKLE E
Sbjct: 1060 RTPMNAVIGMTGLLLNTTLDNQQRDFVETIRSSGDALLTLINDILDFSKIEAGKLEFEEQ 1119
Query: 509 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT 568
F+LRA +++ L L + ++ DK +ELA P ++GD R RQI+ NL+ N +KFT
Sbjct: 1120 PFSLRACIEESLRLVAPRAIDKQLELAYLFDPSTPNHIVGDVTRLRQILVNLLTNGVKFT 1179
Query: 569 EKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFK 628
E+G + V V+++ D+ + E T+P +
Sbjct: 1180 EQGEV---VIYVQDITDTDIAQPE-------------------------------TTPQR 1205
Query: 629 SSSADLIN----LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 684
+ D+ N + V D+G GIP + R+F F QV S ++ +GGTG+GL+I + L
Sbjct: 1206 KNFTDIQNQRRLVQFEVRDSGIGIPADRMDRLFKSFSQVDASTTKKYGGTGLGLAICRSL 1265
Query: 685 VGRMKGEIGFVSIPNIGSTFTFT---AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKA 741
M G I S +GS+F FT V G +T ++ SQQ+ G +
Sbjct: 1266 SQMMGGRIWVESKAGVGSSFFFTIAVPVAPEGENTLDQ--SQQL----------LDGKQL 1313
Query: 742 LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSV 801
LVVD P ++ Q G+ ++ VS + L+ + S SK ++ +++ ++ E D
Sbjct: 1314 LVVDDNPTNRRILTLQAQTWGMGIQTVSGGAEALALLESDSK-FDLAILDMQMPEMD--- 1369
Query: 802 STLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL--- 858
++R+L L +L+ S+ + +++ KP++ S L +L
Sbjct: 1370 GVELARHIRQLDQRKHLPLVMLS-SLGQDEIIKHKQEIQFSAILNKPIQQSYLYDALAEI 1428
Query: 859 ---QRAM---GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAA 912
QR V + N PS+ +IL+ +D VN KVA LK+ G
Sbjct: 1429 FEGQRVQVKPTVPSPANTEEQGDPSL---------QILLAEDIVVNQKVALLILKQLGYR 1479
Query: 913 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
G++ E L +D MD+QMPEMDG
Sbjct: 1480 ADVANNGEEVLEALH-RQSYDVVLMDVQMPEMDG 1512
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 881 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 940
+ LL G+++L+VDDN N ++ + +G + V G +A LL +FD +D+Q
Sbjct: 1305 QQLLDGKQLLVVDDNPTNRRILTLQAQTWGMGIQTVSGGAEALALLESDSKFDLAILDMQ 1364
Query: 941 MPEMDGYEM 949
MPEMDG E+
Sbjct: 1365 MPEMDGVEL 1373
>gi|350551908|ref|ZP_08921118.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349795838|gb|EGZ49631.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1531
Score = 242 bits (617), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 170/536 (31%), Positives = 257/536 (47%), Gaps = 84/536 (15%)
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
KA+ A AKS+FLA +SHEIRTPMNGV+GM +L+DTEL+ Q+ Y T +AS +AL++L
Sbjct: 867 KAQQASQAKSEFLANMSHEIRTPMNGVIGMTGLLLDTELNGEQRHYANTVKASAEALLAL 926
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
IN++LD +K+E+GKL+LE + F+LR LDD + + K+++KG+E VP L G
Sbjct: 927 INDILDFSKIEAGKLDLETLDFDLRTTLDDFAMMMAFKAEEKGLEFICAADVDVPVLLCG 986
Query: 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
DPGR RQI+TNL+ N+IKFT +G + V V V
Sbjct: 987 DPGRLRQILTNLVSNAIKFTHQGEVAVRVSCVH--------------------------- 1019
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
+ A +L SV DTG GIP + R+F F QV SI+
Sbjct: 1020 ---------------------TDAQTAHLRFSVRDTGIGIPKDKMDRLFQSFSQVDASIT 1058
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 728
R GGTG+GL+IS+ L M GEIG S+ GSTF FT G Q+ + Q
Sbjct: 1059 REFGGTGLGLAISRQLAILMGGEIGVDSVQGEGSTFWFTVKLG----------CQEGDAQ 1108
Query: 729 PNS--VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
S + + G++AL+VD ++ ++ ++ D Q L+ + G
Sbjct: 1109 AESTLLIASLHGVRALIVDDNATNREILEQRLKHWQMRTSSACDGPQALALLYQG----- 1163
Query: 787 MILVEQEVWE---KDTSVSTLFVNNLRKL---GCGFQSKLFLLANSISSSRANTSTDGVS 840
L EQ+ ++ D + + L ++ Q ++ S+ + +
Sbjct: 1164 --LSEQDPYQLAILDMCMPGMDGETLGRVIRADTRLQETRLVMMTSVGQRGQGKRLEEIG 1221
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL-----PSMSLRHLLLGR-KILIVDD 894
+ KPL+ L L A+ + L S + + + +IL+ +D
Sbjct: 1222 FSGYLSKPLQHLELFDCLSLALAREQHAPLITQHLTHELHKSQAAEYFKDSKARILLAED 1281
Query: 895 NNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGYE 948
N +N +VA L+++G V G +A L +P +D MD+QMPEMDG +
Sbjct: 1282 NIINQQVALGILRKFGLRADAVANGMEALSALSSLP---YDLVLMDVQMPEMDGLQ 1334
>gi|347757673|ref|YP_004865235.1| sensory box protein [Micavibrio aeruginosavorus ARL-13]
gi|347590191|gb|AEP09233.1| sensory box protein [Micavibrio aeruginosavorus ARL-13]
Length = 1341
Score = 242 bits (617), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 168/567 (29%), Positives = 276/567 (48%), Gaps = 85/567 (14%)
Query: 403 GHIFQ--ATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 460
GH+ + + ++E+ + + + +A++A+ AKS FLA +SHEIRTPMNG++GM
Sbjct: 631 GHVIRIVGAHTDVTEIEQANRNLKKARDEADSANRAKSDFLANMSHEIRTPMNGIIGMTH 690
Query: 461 MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 520
+L++T+LD Q+ Y +T S ++L+ +IN++LD +K+E+GK+ELE + F+ + + +DV
Sbjct: 691 LLLETKLDSRQRHYAQTVGQSAESLLQIINDILDFSKIEAGKMELENIPFDFQLLCEDVS 750
Query: 521 SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580
+ ++Q+KG+E + P+ L GDP R RQI+ NL GN+IKFT++G++ V V
Sbjct: 751 EMMFVRAQEKGIEFLLSWDPDCPQFLFGDPVRIRQILFNLCGNAIKFTDEGYVLVKV--- 807
Query: 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 640
K T +DG T +L +S
Sbjct: 808 --------------------------------KHLGT--RDGHT-----------DLRIS 822
Query: 641 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700
V DTG GI E Q+ +F F Q S +R +GGTG+GL+ISK L M G I S P +
Sbjct: 823 VVDTGIGIAKEKQALVFNKFDQADGSTTRRYGGTGLGLTISKQLAELMGGHISLTSEPGV 882
Query: 701 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 760
GSTF+ + + ++ + + G++AL++D + ++ ++
Sbjct: 883 GSTFSVHLTLSVAPRPKSYVRAPELEDFDGT------GIRALIIDDNIMSCEIFDTYLSS 936
Query: 761 LGIQVEVVSDQLQCLSQIASG---SKIINMILVEQEVWEKD-TSVSTLFVNNLRKLGCGF 816
+G+ VE S+ LS++ + + ++V+ + D S+ +L N +
Sbjct: 937 IGMNVETESNPYNVLSKMERAVDEGRPYSFLIVDYAMPGMDGISLCSLIAQNKK-----I 991
Query: 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML---AASLQRAMGVGNKGNIRNW 873
Q + ++A S I + KP+R S L A+L +A G +
Sbjct: 992 QGAIAIMATSQPGRTDIERMQRAGIKGYLSKPVRPSELISVIATLWKARKTGEDMGL--- 1048
Query: 874 ELPSMSLRHLLLGR------------KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK 921
+ +L GR ++L+V+DN VN +V A L YG V+ G+
Sbjct: 1049 -VTRFTLDEQWAGRIRGPDDLYFKDTRVLVVEDNQVNQEVMVAMLDHYGIRSAVVDNGRD 1107
Query: 922 ATELLMPPHQFDACFMDIQMPEMDGYE 948
A +M FD FMD QMP MDGYE
Sbjct: 1108 AVR-IMREQDFDLVFMDCQMPIMDGYE 1133
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 97/191 (50%), Gaps = 23/191 (12%)
Query: 130 LQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFER-PLTSGVAYAVRV 188
L+ Q + M +QA+ +F + + ++D+ F +T AF+R P + + RV
Sbjct: 222 LETQIHDYMQELQALQ----SFFNASD--SVDRREFEVFT-YNAFKRNPGILAMDWMPRV 274
Query: 189 LRSEREEFE--KQQGWTIKRMDTFEHNPVHKD--EPSPIEEEYAPVIFAQ-DTVSHVISL 243
L SER EFE +QQ + F PV D E SP +EY P+ F + D+ + I
Sbjct: 275 LDSERAEFEALRQQEYP----GFFIKAPVGPDAWERSPRRDEYYPIEFIEPDSFNRYIGY 330
Query: 244 DMLSGKEDRENVLRARASGKGVLTAPFRLL---KTNRLGVILTFAVYKR-ELPSNATPNE 299
D+ + + +RAR SG V+T+ +LL ++++ G +L VY+R L +N +
Sbjct: 331 DLSANEGRYAAFIRARDSGNAVITSRIKLLPDEESDQYGFLLVLPVYERGALITNVA--Q 388
Query: 300 RIEATDGYLGG 310
R +A G++ G
Sbjct: 389 RRDALMGFVAG 399
>gi|301064957|ref|ZP_07205311.1| PAS domain S-box protein [delta proteobacterium NaphS2]
gi|300440940|gb|EFK05351.1| PAS domain S-box protein [delta proteobacterium NaphS2]
Length = 914
Score = 242 bits (617), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 168/561 (29%), Positives = 277/561 (49%), Gaps = 89/561 (15%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+++ +++AEAA +AK QFLA +SHEIRTPMN V+GM ++L+ T+LD QQ+YV +++
Sbjct: 250 LVKARREAEAASMAKGQFLANMSHEIRTPMNAVIGMTELLLGTDLDTEQQEYVEIVKSAA 309
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
L++LIN++LD +K+ESGKLE E ++F+LR +++ V + + +Q K +E ++
Sbjct: 310 NGLLTLINDILDFSKIESGKLEFEKIAFDLRYVIEGVGEMMAPNAQTKQLEFTCFVDPDC 369
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
L+GDP R RQ++ NL GN++KFTEKG++ + ++ E
Sbjct: 370 EVRLLGDPERLRQVLVNLTGNAVKFTEKGNVDIHAAMIGE-------------------- 409
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
+DG ++ + ++ DTG GIP + Q +F F Q
Sbjct: 410 -----------------EDG-----------MVLIRFAISDTGMGIPKDRQEAVFNSFTQ 441
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +R GTG+GLSISK LV M G +G S +GSTF FT F
Sbjct: 442 VDGSSTRQFEGTGLGLSISKRLVALMGGRMGLDSEVGVGSTFWFTLPFAK---------- 491
Query: 723 QQMNNQPNSVS----SEFQGMKALVVDPRPIRAKVSRYHIQRLGI---QVEVVSDQLQCL 775
+QP + +G L+VD + + G + E + ++ L
Sbjct: 492 ---QDQPRKPAIKPRQSVRGSHVLIVDDNATNRTILNKTLVSFGCFPEEAESGGEAMELL 548
Query: 776 SQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 835
+Q + + + +L++ ++ E D V +R +++ +L + A
Sbjct: 549 AQRMAEGRPFDAVLLDHQMPEMDGEA---VVRAIRSKPGNENTRILILTSVGERGDARRF 605
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI---RNWELPSMSLRHLL----LGR- 887
D + + + KP+R S+L +L + VG+ + + P++ RH L +G+
Sbjct: 606 KD-LGCCAYLNKPVRQSLLLDALAETL-VGSDVKVCHKTGYNRPAIITRHSLGEEAMGKA 663
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
++L+V+DN VN +VA L++ G V G A E + + +D FMDIQMP MDGY
Sbjct: 664 RVLLVEDNLVNQRVAVRILEKAGHTVHVAGDGLVALEAVKKDN-YDVVFMDIQMPGMDGY 722
Query: 948 -------EMLPCFESFLLIAI 961
+M P F +IA+
Sbjct: 723 AATATIRKMAPRFSELPIIAM 743
>gi|158339052|ref|YP_001520229.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
gi|158309293|gb|ABW30910.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
Length = 1564
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 179/570 (31%), Positives = 285/570 (50%), Gaps = 69/570 (12%)
Query: 389 ISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEI 448
I G + IA GH+ + + + ++ + + +K A+AA+VAKS+FLAT+SHEI
Sbjct: 982 IEAVAGQVGIALAHGHLLEQEQQQRQTLTQNNTALKQARKDADAANVAKSEFLATMSHEI 1041
Query: 449 RTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 508
RTPMN V+GM +L++T LD Q+D+V T ++SG AL++LIN++LD +K+E+GKLE E
Sbjct: 1042 RTPMNAVIGMTGLLLNTTLDNQQRDFVETIRSSGDALLTLINDILDFSKIEAGKLEFEEQ 1101
Query: 509 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT 568
F+LRA +++ L L + ++ DK +ELA P ++GD R RQI+ NL+ N +KFT
Sbjct: 1102 PFSLRACIEESLRLVAPRAIDKQLELAYLFDPSTPNHIVGDVTRLRQILVNLLTNGVKFT 1161
Query: 569 EKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFK 628
E+G + V V+++ D+ + E +S + K F F+
Sbjct: 1162 EQGEV---VIYVQDITDTDITQPETTSQR---------------KNFTDIQNQRRLIQFE 1203
Query: 629 SSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRM 688
V D+G GIP + R+F F QV S ++ +GGTG+GL+I + L M
Sbjct: 1204 ------------VRDSGIGIPADRMDRLFKSFSQVDASTTKKYGGTGLGLAICRSLSQMM 1251
Query: 689 KGEIGFVSIPNIGSTFTFT---AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVD 745
G I S +GS+F FT V G +T ++ SQQ+ G + LVVD
Sbjct: 1252 GGRIWVESKAGVGSSFFFTIAVPVAPEGENTLDQ--SQQL----------LDGKQLLVVD 1299
Query: 746 PRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLF 805
P ++ Q G+ ++ VS + L+ + S SK ++ +++ ++ E D
Sbjct: 1300 DNPTNRRILTLQAQTWGMGIQTVSGGAEALALLESDSK-FDLAILDMQMPEMD---GVEL 1355
Query: 806 VNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL------Q 859
++R+L L +L+ S+ + +++ KP++ S L +L Q
Sbjct: 1356 ARHIRQLDQRKHLPLVMLS-SLGQDEIIKHKQEIQFSAILNKPIQQSYLYDALAEIFEGQ 1414
Query: 860 RAM---GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCV 916
R V + N PS+ +IL+ +D VN KVA LK+ G
Sbjct: 1415 RVQVKPTVPSPVNTEEQGDPSL---------QILLAEDIVVNQKVALLILKQLGYRADVA 1465
Query: 917 ERGKKATELLMPPHQFDACFMDIQMPEMDG 946
G++ E L +D MD+QMPEMDG
Sbjct: 1466 NNGEEVLEALH-RQSYDVVLMDVQMPEMDG 1494
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 881 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 940
+ LL G+++L+VDDN N ++ + +G + V G +A LL +FD +D+Q
Sbjct: 1287 QQLLDGKQLLVVDDNPTNRRILTLQAQTWGMGIQTVSGGAEALALLESDSKFDLAILDMQ 1346
Query: 941 MPEMDGYEM 949
MPEMDG E+
Sbjct: 1347 MPEMDGVEL 1355
>gi|414071300|ref|ZP_11407271.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. Bsw20308]
gi|410806264|gb|EKS12259.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. Bsw20308]
Length = 906
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 164/521 (31%), Positives = 256/521 (49%), Gaps = 72/521 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A+ KS FLA +SHE+RTP+NGV+G L T L+ Q+DY+ T + S +L+
Sbjct: 258 KKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKTPLNKHQKDYLDTIELSANSLM 317
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++I+++LD +K+E+G +ELE++ F LR +++V++L + + DK +EL++YI+ +VP+ L
Sbjct: 318 TIISDILDFSKLEAGAMELESIQFQLRDAINEVMTLLAPSAHDKQLELSIYINQQVPDDL 377
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP RF+QI+ NL+ N+IKFTEKG I V V
Sbjct: 378 TGDPTRFKQILINLLSNAIKFTEKGSIKVDV----------------------------- 408
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
++ +++ ++ L+VSV DTG GIP+ Q +FTPF Q S
Sbjct: 409 -------SYRLLDEERAS------------LLVSVTDTGVGIPMNKQDSLFTPFGQADSS 449
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R GGTG+GL I+K++V M G I S P G+ FTF ++F N N
Sbjct: 450 ITRKFGGTGLGLIITKHIVEAMNGRITLNSAPGNGTCFTFNSIF-------RLPNHVFTN 502
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+ P S G + L ++P + + V ++ L I + +
Sbjct: 503 DLP---SKSLIGKRILYLEPHEHTHHAVLSLLTQWQTSVTACFNETSFLDAITNKEHKYD 559
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+ L+ D +V ++R+ L+L+ N++S + G + +
Sbjct: 560 ICLIGHMASVDDMQQLKSYVKSVRE----STDYLYLMLNTVSHNMREAFI-GSGADACLS 614
Query: 847 KPLRSSMLAASLQRAMGVGNK-GNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905
KPL L L + + NI E H LL K+L+VDDN+ NLK+
Sbjct: 615 KPLNHRKLCEVLAAPYRLDHPVHNIEQNE-------HQLLPLKVLVVDDNDANLKLLHTL 667
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
L + G +A L H++D FMDIQMP MDG
Sbjct: 668 LSEQIEVIETAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDG 707
>gi|359453122|ref|ZP_09242446.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. BSi20495]
gi|358049753|dbj|GAA78695.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. BSi20495]
Length = 928
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 164/521 (31%), Positives = 256/521 (49%), Gaps = 72/521 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A+ KS FLA +SHE+RTP+NGV+G L T L+ Q+DY+ T + S +L+
Sbjct: 280 KKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKTPLNKHQKDYLDTIELSANSLM 339
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++I+++LD +K+E+G +ELE++ F LR +++V++L + + DK +EL++YI+ +VP+ L
Sbjct: 340 TIISDILDFSKLEAGAMELESIQFQLRDAINEVMTLLAPSAHDKQLELSIYINQQVPDDL 399
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP RF+QI+ NL+ N+IKFTEKG I V V
Sbjct: 400 TGDPTRFKQILINLLSNAIKFTEKGSIKVDV----------------------------- 430
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
++ +++ ++ L+VSV DTG GIP+ Q +FTPF Q S
Sbjct: 431 -------SYRLLDEERAS------------LLVSVTDTGVGIPMNKQDSLFTPFGQADSS 471
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R GGTG+GL I+K++V M G I S P G+ FTF ++F N N
Sbjct: 472 ITRKFGGTGLGLIITKHIVEAMNGRITLNSAPGNGTCFTFNSIF-------RLPNHVFTN 524
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+ P S G + L ++P + + V ++ L I + +
Sbjct: 525 DLP---SKSLIGKRILYLEPHEHTHHAVLSLLTQWQTSVTACFNETSFLDAITNKEHKYD 581
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+ L+ D +V ++R+ L+L+ N++S + G + +
Sbjct: 582 ICLIGHMASVDDMQQLKSYVKSVRE----STDYLYLMLNTVSHNMREAFI-GSGADACLS 636
Query: 847 KPLRSSMLAASLQRAMGVGNK-GNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905
KPL L L + + NI E H LL K+L+VDDN+ NLK+
Sbjct: 637 KPLNHRKLCEVLAAPYRLDHPVHNIEQNE-------HQLLPLKVLVVDDNDANLKLLHTL 689
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
L + G +A L H++D FMDIQMP MDG
Sbjct: 690 LSEQIEVIETAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDG 729
>gi|119776084|ref|YP_928824.1| sensory box histidine kinase/response regulator [Shewanella
amazonensis SB2B]
gi|119768584|gb|ABM01155.1| sensory box histidine kinase/response regulator [Shewanella
amazonensis SB2B]
Length = 1763
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 171/528 (32%), Positives = 268/528 (50%), Gaps = 72/528 (13%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+M K+ A+AA+ AKS FLA +SHEIRTPMN ++GM + + TELD Q++YV + +
Sbjct: 1023 LMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDRKQRNYVEKIERAS 1082
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
K+L+ +IN++LD +K+E+GKL++E V F L IL+D+ +FS K+ DK +EL ++ V
Sbjct: 1083 KSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMFSVKAADKQLELLFSVAPGV 1142
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P L GDP R Q++ NLM N+IKFTE+G + +++ + D ++++ + S L+
Sbjct: 1143 PTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLSISELARDEDQVQLKFAVRDSGIGLTA 1202
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
A K FK+F+Q DT
Sbjct: 1203 EQQA------KLFKSFSQ---------------------ADT------------------ 1217
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
S +R +GGTG+GL+I K LV M GEIG S GSTF FT S N+
Sbjct: 1218 ---STTRKYGGTGLGLAICKQLVELMGGEIGVDSQFGNGSTFYFTV------SVKVAQNA 1268
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
Q +V E +GM LVVD + R +Q +G V+ ++ L + A
Sbjct: 1269 QL------NVEQELEGMAVLVVDDNSTARDILRTTLQSMGFSVDSARSGMEALEKCA--E 1320
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
+ + L++ ++ E D + + + L+ Q L L+ ++ ++S + + I
Sbjct: 1321 RDYRIALIDWKMPEMDGTETAARMRELK------QPPLILMVSAHANSEFIDKVEEMGIN 1374
Query: 843 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNNVNLK 900
I KP+ +S L + A+G +R P M + L L G++IL+V+DN +N +
Sbjct: 1375 GYITKPISASRLLDGIMSALGRQGHKPVRRKAQP-MDAQKLSGLKGKRILLVEDNEMNQE 1433
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VA+ L++ G + + G+ A E L FD MD QMP MDGY+
Sbjct: 1434 VASEFLEQVGVVLSIADNGQIALEKL-GQQSFDLVLMDCQMPVMDGYQ 1480
>gi|149177515|ref|ZP_01856118.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
gi|148843665|gb|EDL58025.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
Length = 1129
Score = 241 bits (615), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 167/532 (31%), Positives = 262/532 (49%), Gaps = 71/532 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K +AE A A+ +FLA VSHE+RTPMN +LGML++ + L ++DY++TA+ S +L+
Sbjct: 445 KDEAEQATRAQGEFLANVSHELRTPMNAILGMLELTLQENLTPLKRDYLQTAKDSADSLL 504
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
L+N++LD +++E+G ELE V F+LR ++D+ + S ++ +KG+EL I RVP +
Sbjct: 505 LLVNDILDFSRLEAGHFELEPVPFSLRVMIDEAVKTLSLRACEKGLELICRIDKRVPSQV 564
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R RQI+TNL GN+IKFTE+G + V V L+E + P+
Sbjct: 565 LGDPVRLRQILTNLAGNAIKFTEQGEVVVDVKLIEPAGE-----------------IPLP 607
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
K F SV DTG GI +E Q RIF PF Q S
Sbjct: 608 RLQPGEKALLEF---------------------SVSDTGIGIAVEDQKRIFAPFAQADAS 646
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R + GTG+GL+I L+G M GE+ S P GS F+F + E
Sbjct: 647 TTRHYSGTGLGLAICHELIGLMDGEMYLTSEPGEGSCFSFQVIL-----PVAEPEESVQG 701
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL-------GIQVEVVSDQLQCLSQIA 779
N+ SV SE + + LVVD + +R ++ + V+ + L LS ++
Sbjct: 702 NEKASV-SELRDLPVLVVDDN----QTNRVILEEMLTNWSMSPTPVDSAREALDQLSALS 756
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
K +++V+ + E D + + R+ G S L+ +S + G+
Sbjct: 757 EKEKSYPLVIVDALMPETD---GFMLLEQAREEGL-LDSATILMLSSADHQIFSERCQGL 812
Query: 840 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR---KILIVDDNN 896
I + + KP+ S L ++ A+ + +L S S+ + + ++L+ +D
Sbjct: 813 DISAFLEKPVSQSDLLDAIMTAL--------KGPQLESSSVSQIRESKQTLRVLVAEDTP 864
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
N KV A LK+ G V + G++A + L FD MD+QMP MDG +
Sbjct: 865 ANQKVINAILKKRGHQCVIADNGREAVDCLR-NESFDVVLMDVQMPTMDGLQ 915
>gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris
DSM 8797]
gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris
DSM 8797]
Length = 1362
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 170/549 (30%), Positives = 270/549 (49%), Gaps = 65/549 (11%)
Query: 403 GHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 462
G +F A ++ I ++ + + K+ AEAA AKS FLAT+SHEIRTPMN V+GM ++L
Sbjct: 655 GFLFAAFIHDITVEKQAEEELRQAKEAAEAASRAKSAFLATMSHEIRTPMNAVIGMTELL 714
Query: 463 MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 522
+DT+L+ TQ++Y+ Q SG++L+S+IN++LD +K+E+G+ +LE F+LR L D +
Sbjct: 715 LDTDLNSTQREYLTMVQESGESLLSVINDILDFSKIEAGRFDLEKAPFHLRENLGDTMRS 774
Query: 523 FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 582
+ ++ K +ELA ++ VP+T++GD R RQII NL+GN+IKFTE+G I + V
Sbjct: 775 LAVRAHHKHLELAFHLDADVPDTIVGDRFRLRQIIVNLVGNAIKFTEEGEIVLDVNY--- 831
Query: 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 642
F++ N+ + L V
Sbjct: 832 -------------------------------DFQSKNE--------------LQLHFVVR 846
Query: 643 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 702
DTG GIP + Q +IF F QV S++R GTG+GL+I+ L+ M G+I S GS
Sbjct: 847 DTGIGIPEDKQQQIFQAFEQVDESMARRFSGTGLGLAIASRLIEMMGGKIWVNSEVGKGS 906
Query: 703 TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 762
F FTA F E +++ + +E G++ L+VD ++ +
Sbjct: 907 EFHFTARF--------ELTEEEVPANEPLLKAELDGLRVLIVDDNLTNCQILEEMLGSWN 958
Query: 763 IQVEVV---SDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819
+Q + + SD L + +++LV+ + D + LG S
Sbjct: 959 MQTQSINRGSDALDVMHASQQSKHPFDLVLVDANMPVMDGFSVAKAIKQDSTLG----SA 1014
Query: 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS 879
+ ++ S + + I + ++KPL+ S L S+ +G+ N + +
Sbjct: 1015 VIMMITSSDRQGEISRCKELGIAAHLIKPLKQSELFNSIAETLGM-NGTPQHDMRTATAD 1073
Query: 880 LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939
L + KIL+ +D+ VN K+A A LK G + V G A +FD MD+
Sbjct: 1074 LAQRIPPLKILLAEDSLVNQKLALALLKPQGHEIAVVLNGSDAVN-ERKNREFDLILMDV 1132
Query: 940 QMPEMDGYE 948
QMPEMDG E
Sbjct: 1133 QMPEMDGLE 1141
>gi|322421925|ref|YP_004201148.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
gi|320128312|gb|ADW15872.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
Length = 951
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 166/529 (31%), Positives = 258/529 (48%), Gaps = 80/529 (15%)
Query: 428 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 487
+ A+AA AKSQFLA +SHEIRTPMNG+LGM ++LM T LD Q+ +V + + SG+AL+S
Sbjct: 273 EAAQAASRAKSQFLANMSHEIRTPMNGMLGMAELLMATRLDEQQRRFVSSVRRSGEALLS 332
Query: 488 LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 547
+IN++LD +K+E+GKLELE +FNL + DV+ L + + KG+E+A + + VP L+
Sbjct: 333 IINDILDFSKIEAGKLELEETAFNLEDTVADVIELLAETAHRKGLEIAALVENDVPPVLL 392
Query: 548 GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 607
GD R Q++ NL+GN++KFT++G + ++ L EE + + V
Sbjct: 393 GDQVRVHQVLMNLVGNAVKFTDQGEVIISGMLKEEHKEEVTV------------------ 434
Query: 608 RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667
++ V DTG GI E + RIF F Q S
Sbjct: 435 ------------------------------LIRVSDTGIGISDEVKGRIFDGFSQADNST 464
Query: 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 727
+R +GGTG+GL+I++ LV M GEIG S GSTF FT ++ +
Sbjct: 465 TRKYGGTGLGLTIARQLVELMGGEIGVESEVGRGSTFWFTLKL-----------HKEASE 513
Query: 728 QPNSVSS-EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK--- 783
+P S + G +AL+VD + + + G+ ++ + L + ++
Sbjct: 514 RPRSGEAVSLAGYRALLVDDNSTNLSIMHHELHAWGMTADMADNAATALGLMRHAARAES 573
Query: 784 -----IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
I++M++ E E ++ K L+ S+
Sbjct: 574 PYDLAILDMLMPEMNGIELARAI---------KANPDLAQTRLLMVTSVGQYGDEAEAVK 624
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 898
I I KP+R S L +++ +GVG ++ + S + L ++L+V+DN VN
Sbjct: 625 AGIGCYISKPVRQSRLYSAIIDLLGVGMSSAVQPQQ--SAEPGPVRLSAEVLLVEDNPVN 682
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
VA A L+ G V G +A + +M +FD FMD QMP MDGY
Sbjct: 683 QDVATAMLECSGCRVSVANNGAEALD-VMTRRRFDLIFMDCQMPVMDGY 730
>gi|428312486|ref|YP_007123463.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428254098|gb|AFZ20057.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1949
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 176/533 (33%), Positives = 272/533 (51%), Gaps = 36/533 (6%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AEAA+ AKS+FLAT+SHEIRTPMN V+GM +L+DTE+ Q +V T + SG+AL+
Sbjct: 1161 KQAAEAANRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTEVTPQQHQFVETIRNSGEALL 1220
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+ESGKLELE F LR +++ L L + K+ +K +ELA I + P T+
Sbjct: 1221 TIINDILDFSKIESGKLELEEQPFKLRMCIEESLDLLAPKAAEKELELAYLIDSQTPVTI 1280
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS-SSKNTLSGYPV 605
GD R RQI+ NL+ N++KFT G + V+V + V+ E+ S G+ +
Sbjct: 1281 AGDVTRLRQILVNLLSNAVKFTRSGEVTVSV-----TAKGVPVKHEVGRESVGNNPGFSI 1335
Query: 606 ADRCHSWKGFKTFNQDGSTSPFKSSSA------DLINLIVSVEDTGQGIPLEAQSRIFTP 659
+ ++ G+ SS + + +V+DTG GIP E R+F P
Sbjct: 1336 SPSPNTQPQLDKPCDPGTRQDTLSSVSVHPVPYPYYEIQFAVKDTGIGIPTERLDRLFQP 1395
Query: 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV-FGNGSSTSN 718
F QV S SR +GGTG+GL ISK L M G I S GS F FT + SST
Sbjct: 1396 FSQVDSSTSRHYGGTGLGLVISKRLCEMMGGRIWVESEVGKGSIFYFTVIAHAVYSSTPT 1455
Query: 719 EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+ + Q + +G + L+VD K+ + G+ + L +
Sbjct: 1456 DLDVAQ---------PQLEGKRLLIVDDNATNRKILTLQGKSWGMLTRAAHSGREALDWL 1506
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
+ G ++ ++ +++ ++ D +RK G+Q ++ SI ++ +
Sbjct: 1507 SQG-ELFDLAILDMQMPGMD---GLTLATEIRK-KPGYQELPLVMLTSIGKPESSDPSQM 1561
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-----ELPSMSLRHLLLGRKILIVD 893
+ + KP++ S L SL + + +G +R E+ S +L H L KIL+ +
Sbjct: 1562 SHFAAFLNKPIKQSQLYESLNQVL-LGQPIKVRPLCSLYPEIDS-NLAH-KLPLKILLAE 1618
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
DN VN +VA L+R G V G + E + +D MD+QMPEMDG
Sbjct: 1619 DNVVNQQVALHLLQRLGYRADVVGNGLEVLEAVH-RQSYDVVLMDVQMPEMDG 1670
>gi|359433021|ref|ZP_09223366.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. BSi20652]
gi|357920330|dbj|GAA59615.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. BSi20652]
Length = 924
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 165/521 (31%), Positives = 256/521 (49%), Gaps = 72/521 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A+ KS FLA +SHE+RTP+NGV+G L T L+ Q+DY+ T S +L+
Sbjct: 280 KKEAQDANRVKSDFLAKMSHELRTPLNGVMGFTRQLYKTPLNKHQKDYLDTIMLSANSLM 339
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++I+++LD +K+E+G +ELE++ F LR +++V++L + + DK +EL++YI+ +VP+ L
Sbjct: 340 TIISDILDFSKLEAGAMELESIQFQLRDSVNEVMTLLAPSAHDKQLELSIYINHQVPDDL 399
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP RF+Q++ NL+ N+IKFTEKG I V V
Sbjct: 400 TGDPTRFKQVLINLLSNAIKFTEKGSIKVDV----------------------------- 430
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
F+ + + ++ ++VSV DTG GIP++ Q +FTPF Q S
Sbjct: 431 -------SFRLLDDERAS------------VLVSVTDTGVGIPMDKQDSLFTPFGQADSS 471
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R GGTG+GL I+K++V M G I S P G+ FTF +VF N N N
Sbjct: 472 ITRKFGGTGLGLIITKHIVEAMNGRITLNSAPGNGTCFTFNSVF-------NLPNHVFTN 524
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+ P S G + L ++P + + V ++ L I S +
Sbjct: 525 DLP---SKSLIGKRILYLEPHEHTHHAVLSLLTQWQTNVTACFNETSFLDAIKSNDFKYD 581
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+ L+ D ++ ++R+ L+L+ N++S + G + +
Sbjct: 582 ICLIGHMASVDDMQQLKGYIKSVRE----STDYLYLMLNTVSHNMREAFI-GSGADACLS 636
Query: 847 KPLRSSMLAASLQRAMGVGNK-GNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905
KPL L L + + NI E H LL K+L+VDDN+ NLK+
Sbjct: 637 KPLNHRKLCELLAAPYRLDHPVHNIEQNE-------HQLLPLKVLVVDDNDANLKLLHTL 689
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
L + G +A L H++D FMDIQMP MDG
Sbjct: 690 LSEQIEIIETAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDG 729
>gi|373456904|ref|ZP_09548671.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
DSM 13497]
gi|371718568|gb|EHO40339.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
DSM 13497]
Length = 805
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 169/569 (29%), Positives = 284/569 (49%), Gaps = 77/569 (13%)
Query: 384 WPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLAT 443
+PL+ I GI+ ++V F N E +++ ++ AEAAD+AKS FLA+
Sbjct: 239 YPLIVIHLLFGIIGTLAIV---FFGIFN-----ERKQRELIKAREAAEAADIAKSDFLAS 290
Query: 444 VSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKL 503
+SHEIRTPMNGV+GM +LM T L Q++YV+T + S ++L+++IN++LD +K+ESGK+
Sbjct: 291 MSHEIRTPMNGVMGMSSLLMQTPLTPEQREYVQTIRISAESLLTIINDILDFSKIESGKM 350
Query: 504 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGN 563
+LE F L+ +++ L L + K+ +K ++L +I VP + D R RQ++ NL+ N
Sbjct: 351 DLEFQPFELKTCIEEALDLVAPKAAEKNLDLVYFIEPDVPTYIESDITRLRQVLVNLINN 410
Query: 564 SIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 623
++KFT+KG +F+ V + QDG
Sbjct: 411 AVKFTQKGEVFINVGRIA--------------------------------------QDGD 432
Query: 624 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKY 683
T + L SV+DTG GI + +++F F Q S +R +GGTG+GL+ISK
Sbjct: 433 T----------VELQFSVKDTGIGIAEDKINKLFDAFTQADSSTTRKYGGTGLGLAISKR 482
Query: 684 LVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALV 743
LV M G I S GSTF FT SS ++ + ++ E G+ LV
Sbjct: 483 LVEMMGGRIWVTSKVGKGSTFYFTIKAKAASSLPKKYLNIKI--------PELTGVHVLV 534
Query: 744 VDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVST 803
VD ++ + QR G++V+ + + L + +G++ ++ +++ ++ E D
Sbjct: 535 VDDNKTNRRILKLQCQRWGMKVQEAATAREALEIMKNGTE-FDLAILDMQMPEMD---GV 590
Query: 804 LFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863
+RKL + L +L++ + + +++ KP++ S L +L A+
Sbjct: 591 ELAAEIRKLYSKEELPLIMLSSLGKPPKLKEKAE--MFDALLTKPVKQSQLYNTLLEAL- 647
Query: 864 VGNKGNIR-NWELPSMSLRHLLLGR---KILIVDDNNVNLKVAAAGLKRYGAAVVCVERG 919
K +++ W +L + +IL+ +DN++N K+ L + G G
Sbjct: 648 -NRKPSVQEKWSASEATLDETFARKYPLRILLAEDNSINQKLGLKVLAKMGYTADLAANG 706
Query: 920 KKATELLMPPHQFDACFMDIQMPEMDGYE 948
+ E L ++D FMD+QMPEMDG E
Sbjct: 707 LEVLEAL-KQQRYDLIFMDVQMPEMDGLE 734
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
L G +L+VDDN N ++ +R+G V ++A E++ +FD +D+QMPE
Sbjct: 527 LTGVHVLVVDDNKTNRRILKLQCQRWGMKVQEAATAREALEIMKNGTEFDLAILDMQMPE 586
Query: 944 MDGYEM 949
MDG E+
Sbjct: 587 MDGVEL 592
>gi|189424026|ref|YP_001951203.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
gi|189420285|gb|ACD94683.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
Length = 1245
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 180/529 (34%), Positives = 257/529 (48%), Gaps = 70/529 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+ A+AAD AKS+FLA +SHEIRTPMN V+GM+ + + TE+ Q+DY+R A + +L+
Sbjct: 581 RDSAQAADQAKSEFLANMSHEIRTPMNAVIGMIHLTLKTEMSPKQRDYLRKAGFAADSLL 640
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+I+++LD +KVE+GKLELE F L +LD V S+ K+ +KG+E + I+ VP L
Sbjct: 641 GIIDDILDFSKVEAGKLELEQHQFLLSEVLDTVTSIVGIKAHEKGLEFLLKIAPEVPAQL 700
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R QI+ NL N++KFT +G IFV + +L +N
Sbjct: 701 IGDPLRLGQILINLCNNAVKFTGQGEIFVFI-------------EQLDCREN-------- 739
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ + L SV D G G+ E ++FTPF Q S
Sbjct: 740 --------------------------NRVMLRFSVRDNGIGMTPEQLDKLFTPFTQADAS 773
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R GGTG+GL+ISK LV M GEIG SIP+ GS F FTA FG GSS
Sbjct: 774 STRRFGGTGLGLAISKQLVLLMGGEIGAESIPDKGSVFFFTACFGIGSSPI--------- 824
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
Q + S Q MK LV+D + LG + E+ + + L + K +
Sbjct: 825 LQGPKLPSALQRMKLLVLDDSARSRDIFEGLFYSLGCRAELAASAQEGLGCLERSEKPYD 884
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLA----NSISSSRANTSTDGVSIP 842
++L++ + D V + L Q K+ ++ DG
Sbjct: 885 LLLLDDSLSGLDGFAVARQVRRMSPL--HHQPKIIMITGYGDEEAHKQVVEEGLDGCLTR 942
Query: 843 SVIMKPLRSSMLAA--SLQRAMGVGNKGNIRNWELPSMSLRH-LLLGRKILIVDDNNVNL 899
V ++ L +++AA S R G+ N E R+ L G ++L+V+DN++N
Sbjct: 943 PVTLRSLFDAVVAAFESDSRTEPAGSPVN----ETAGDKRRYGQLRGMRVLLVEDNDMNQ 998
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+VA L G V + G A E L H+FD MDIQMP MDGYE
Sbjct: 999 QVACELLTSAGIEVTVADNGHTAVE-LAAQHRFDTVLMDIQMPVMDGYE 1046
>gi|428772393|ref|YP_007164181.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
gi|428686672|gb|AFZ46532.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
7202]
Length = 1402
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 167/544 (30%), Positives = 271/544 (49%), Gaps = 84/544 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++AEAA+ AKSQFLAT+SHEIRTPMN V+GM +L+DTEL QQ++ + S +L+
Sbjct: 711 KEQAEAANQAKSQFLATMSHEIRTPMNAVIGMTGLLLDTELTPEQQEFTEIIRTSSDSLL 770
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+ESGKLELE F+L ++++ L L + K+ K +EL ++ + ++
Sbjct: 771 SIINDILDFSKIESGKLELEQQPFSLYQVIEESLDLLAPKASQKNIELVYFLDPDISPSI 830
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGD R RQ++ NL+ N++KFT G + ++V T+ + +
Sbjct: 831 IGDVTRLRQVLVNLLSNAVKFTPTGEVILSV---------------------TIDSHSIG 869
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
DR +S NL+ +EDTG GIP R+F F QV S
Sbjct: 870 DRRYS------------------------NLLFVIEDTGIGIPRNRMDRLFKAFSQVDAS 905
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH-----N 721
+R +GGTG+GL+I + LV MKG + S +I + + S T
Sbjct: 906 TTRNYGGTGLGLAICQKLVHLMKGNMWVESKGHIAGEYPPQWQITSHSETPGSKFCFTIK 965
Query: 722 SQQMNNQPNSVSSE---FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
++ +N P S+ ++ QG K L+VD + ++ R + G++V + + + L+ I
Sbjct: 966 TRFSSNIPPSIEAQNSFLQGKKVLIVDDNEVNRRMLRTQCDKFGLEVLITASGEETLALI 1025
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
A I++ +++ ++ + D + ++ + K ++S +L +SI +
Sbjct: 1026 AEQPD-IDLAILDMQMPKMDGATVAKNISAMEK----YRSTPLILLSSIGHGEIEKALKE 1080
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL-------LLGR---- 887
V+ + ++KP++ S L L + + +N LPS L L +G
Sbjct: 1081 VNWAATLIKPIKQSRLFYILSKVL--------QN-PLPSKPLNKLSPVSLTEAIGEEELS 1131
Query: 888 -----KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
KILI +DN +N KV LKR G V G + + L +D MD+QMP
Sbjct: 1132 VTSPLKILIAEDNIINQKVITNILKRLGYRADVVGNGLEVLDALR-RQSYDLILMDVQMP 1190
Query: 943 EMDG 946
EMDG
Sbjct: 1191 EMDG 1194
>gi|326516584|dbj|BAJ92447.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 249
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 114/193 (59%), Positives = 147/193 (76%), Gaps = 10/193 (5%)
Query: 114 KRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTA 173
K E + MC+ERARMLQDQF VS+NHV A++IL++TFH+ K P A+DQ TF YT RT+
Sbjct: 67 KAEEGIVCMCEERARMLQDQFAVSVNHVHALAILVATFHYEKQPPALDQDTFADYTARTS 126
Query: 174 FERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFA 233
FERPL SGVAYA RV+ ++RE FE+QQGW IK M K EPSP ++EYAPVI++
Sbjct: 127 FERPLLSGVAYAQRVMHADRETFERQQGWIIKTM---------KHEPSPAQDEYAPVIYS 177
Query: 234 QDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPS 293
Q+TVS++ LDM+SG+EDREN+LR+RA+GK VLT PFRL+ +N LGV+LTF VY +LP
Sbjct: 178 QETVSYIEGLDMMSGEEDRENILRSRATGKAVLTRPFRLM-SNHLGVVLTFPVYLVDLPP 236
Query: 294 NATPNERIEATDG 306
+A +R+ AT G
Sbjct: 237 DAKVEDRVAATAG 249
>gi|127514128|ref|YP_001095325.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
gi|126639423|gb|ABO25066.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
Length = 1768
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 171/535 (31%), Positives = 259/535 (48%), Gaps = 85/535 (15%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ + K A+AA AKS FLA +SHEIRTPMN ++GM + + T LD QQ+YV +
Sbjct: 1026 LTQAKDVADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTSLDKKQQNYVEKIDRAS 1085
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
K+L+ +IN++LD +K+E+GKL++EAV F L +L+D+ +FS K+ DK +EL ++ +
Sbjct: 1086 KSLLGIINDILDFSKIEAGKLDIEAVPFQLDTMLEDLSDMFSVKAADKQLELLFAVAPNI 1145
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV-YLVEEVVDSIEVETELSSSKNTLS 601
P L+GDP R Q++ NLM N+IKFTE+G + +++ LV E
Sbjct: 1146 PRHLVGDPLRLSQVLINLMNNAIKFTEQGEVMLSISQLVRE------------------- 1186
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+ I L SV D G G+ E + ++F F
Sbjct: 1187 ------------------------------DEEILLKFSVRDNGIGLTEEQRGKLFQSFS 1216
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q S +R +GGTG+GL+I K LV M GEIG S GSTF F+ F
Sbjct: 1217 QADSSTTRKYGGTGLGLAICKQLVELMGGEIGVESQFGNGSTFFFSVRF----------- 1265
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS- 780
+ +NQ V+ E +GM+ LV D + R ++ +G V+ V + LS+
Sbjct: 1266 -KVADNQLIKVAQELEGMRILVADDNATARDILRSTLESMGFTVDTVRSGAEALSRCQET 1324
Query: 781 --GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN----T 834
G +I+ + E + E + + N + L I S+ A+
Sbjct: 1325 DYGVALIDWRMPEMDGLETARRLLSERTNPPKTL--------------IVSAHADGDFID 1370
Query: 835 STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI-RNWELPSMSLRHLLLGRKILIVD 893
+ I I KP+ +S L + A+G + R S +L L G++IL+V+
Sbjct: 1371 KAEQAEISGYITKPISASRLLDGIMSALGKQGAMPVRRKGSEVSPALLAQLKGKRILLVE 1430
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
DN +N +VA+ L++ G + E G+ A E L FD MD QMP MDGY+
Sbjct: 1431 DNEMNQEVASEFLEQVGVILSIAENGQVALEKL-AMQSFDLVLMDCQMPVMDGYQ 1484
>gi|119718530|ref|YP_925495.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
gi|119539191|gb|ABL83808.1| PAS/PAC sensor hybrid histidine kinase [Nocardioides sp. JS614]
Length = 1090
Score = 240 bits (612), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 182/546 (33%), Positives = 271/546 (49%), Gaps = 71/546 (13%)
Query: 413 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 472
+A+ E + E + A A KS+FLAT+SHEIRTPMNGV+G+ D+L+ +ELD Q+
Sbjct: 406 VAERERSAAQLAEARDDAMEASRLKSEFLATMSHEIRTPMNGVIGLTDLLLLSELDDHQR 465
Query: 473 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 532
Q +G L+ +IN++LD +K+ESGKLELE+ F++RA+ D V S+ SG + KG+
Sbjct: 466 RLAENLQGAGLTLLGIINDILDLSKIESGKLELESADFDVRAVFDQVASVLSGPAHAKGL 525
Query: 533 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592
EL V VP L GD RF QI+TNL N++KFT++G + V V+ E E E
Sbjct: 526 ELVVACHPEVPVQLRGDAVRFGQILTNLGSNAVKFTDQGEVVVQA----RVLAEHEHEHE 581
Query: 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 652
S G+ V L V V DTG GI +
Sbjct: 582 SESEPGPGPGHEVV------------------------------LQVDVADTGVGIEPHS 611
Query: 653 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712
+ R+F F Q PS +R HGGTG+GL+IS+ L + GEI S P GSTF+FTA FG
Sbjct: 612 RERLFDAFTQADPSTTRRHGGTGLGLAISRQLAIALGGEIWVESEPGRGSTFSFTARFGR 671
Query: 713 GS---STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHI-QRLG------ 762
GS S EH + G +ALV+D + +R+ + ++LG
Sbjct: 672 GSGATGASREH------------ARHLAGRRALVIDDN----ETNRFILEEQLGAWRMRP 715
Query: 763 IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 822
+ V ++ + L + A ++ L++ + D + +R + L
Sbjct: 716 VAVACATEAIATLREAARSGDPYDVALLDLMMPGTD---GLMLARQIRADPSVGAPAMLL 772
Query: 823 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH 882
L + + +R +G + + + KP+R L +LQ + G+ P+ S
Sbjct: 773 LTSDQTVTR--EEVEGAGVHASLSKPVRHGELRGALQALL-----GDATTRPAPA-SPAG 824
Query: 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
LG ++L+V+DN VN VAA L+ G V V G +A LL PH++ A MD +MP
Sbjct: 825 PGLGIRVLVVEDNQVNQLVAAGLLENLGCTVDVVSDGVEAVRLLTRPHEYAAALMDCRMP 884
Query: 943 EMDGYE 948
+DG++
Sbjct: 885 RLDGFD 890
>gi|428300671|ref|YP_007138977.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
gi|428237215|gb|AFZ03005.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
Length = 1595
Score = 239 bits (611), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 174/570 (30%), Positives = 284/570 (49%), Gaps = 75/570 (13%)
Query: 386 LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 445
L A++ +GI A H+ + ++ + + + KK AEAA+ +KS FLAT+S
Sbjct: 892 LEAVAAQVGI---ALAQAHLLERETSQRELLAQQNQELNIAKKDAEAANRSKSDFLATMS 948
Query: 446 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505
HEIRTPMN V+GM +L++T+L +Q+D+V T ++SG +L++LIN++LD +K+E+GKL+L
Sbjct: 949 HEIRTPMNAVIGMTGLLLNTKLTPSQEDFVETIRSSGDSLLTLINDILDFSKIEAGKLDL 1008
Query: 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 565
E F LR+ +++ L+L + ++ +K +ELA I P ++GD R RQI+ NL+ N++
Sbjct: 1009 EEQPFELRSCVEEALNLVANRALEKKLELACLIDPTTPNIIVGDVTRLRQILVNLLSNAV 1068
Query: 566 KFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 625
KFT G + V V N S
Sbjct: 1069 KFTANGEVVVFV-----------------------------------------NTRSVNS 1087
Query: 626 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 685
+S +L + +V+DTG GIP + +R+F F QV S +R +GGTG+GL+I K L
Sbjct: 1088 TNSNSDRNLYEIEFAVKDTGIGIPADRMNRLFQSFSQVDASTTRQYGGTGLGLAICKRLC 1147
Query: 686 GRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVD 745
M G+I S +GSTF+F ++ S+ Q S +EF G + L+VD
Sbjct: 1148 EMMGGKIWVESEAGVGSTFSFN-IWA--------EISENQAFQEESADNEFLGKRVLIVD 1198
Query: 746 PRPIRAKVSRYHIQRLGI---QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVS 802
++ Q G+ VE S+ L+ Q S ++ +++ ++ E +
Sbjct: 1199 DNATNRQILTLQTQSWGMFNCAVESGSEALKLFDQGVS----FDLAILDMQMPEMNG--I 1252
Query: 803 TLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862
TL +K C ++ ++ SI++ +T + V ++I KP++ L +L +
Sbjct: 1253 TLGEKIRQKPNC--ENMPLVMLTSINAQEISTQINNVEFAAIINKPIQQRQLYRTLGHIL 1310
Query: 863 GVGNKGNIRNWELPSMSLRH------LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCV 916
G GN+ + L++ L +IL+ +DN VN KVA L+R G
Sbjct: 1311 G----GNLIKVNQSTTHLQNDQEQLSQNLPLRILLAEDNTVNQKVALLTLERIGYRADLA 1366
Query: 917 ERGKKATELLMPPHQFDACFMDIQMPEMDG 946
G + + L +D MD+QMPEMDG
Sbjct: 1367 GNGLEVLQALQ-RQPYDLILMDVQMPEMDG 1395
>gi|320160535|ref|YP_004173759.1| putative two-component hybrid sensor and regulator [Anaerolinea
thermophila UNI-1]
gi|319994388|dbj|BAJ63159.1| putative two-component hybrid sensor and regulator [Anaerolinea
thermophila UNI-1]
Length = 1819
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 172/538 (31%), Positives = 264/538 (49%), Gaps = 92/538 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+ +A A KS+FLAT+SHEIRTP+N V+GM ++L+DT L+ Q D+ R + SGK+L+
Sbjct: 1142 RDQALEASRLKSEFLATMSHEIRTPLNAVIGMSEILLDTPLNEEQADFARIIRDSGKSLL 1201
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+G++ LE+V F L ++D V+ +F+ Q K + L +I+ VP +
Sbjct: 1202 SIINDILDFSKIEAGRMTLESVEFQLLPLVDSVIEMFASIVQKKNLHLFGWIAPDVPNIV 1261
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R RQ++ NL+GN +KFTE+GH+ V++ L E + + + + E
Sbjct: 1262 VGDPVRLRQVLINLVGNGVKFTEQGHVSVSISLQERLENEVILRVE-------------- 1307
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
V DTG G+ A+ R+FTPF Q S
Sbjct: 1308 ----------------------------------VHDTGIGLSETARKRLFTPFTQADGS 1333
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
++R GGTG+GL+ISK LV M GEIG S+ GSTF FT S E
Sbjct: 1334 MTRRFGGTGLGLAISKSLVELMGGEIGVESVEGQGSTFWFTVTL----SVRPE------- 1382
Query: 727 NQPNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV---VSDQLQCLSQIASGS 782
QP SV E F G + V+ P+ + +QV V D ++CL + A
Sbjct: 1383 -QPASVEWEAFAGKRVFVLSHDPVEKHFLETMLSGWQMQVHSGCEVEDAVECLRKDAHFD 1441
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
I D S+ + NL L LLAN ++ + + +
Sbjct: 1442 LAI-----------LDISLPADLLRNL--LSHDISRATILLAN-LNERDKCVAYEQLERV 1487
Query: 843 SVIMKPLRSSMLAASL----------QRAMGVGNKGNIRNWELPSMSLRHLLLGRKI-LI 891
I++P+R S+L ++ +R + + +++ P + G KI L+
Sbjct: 1488 VTILRPVRQSVLMETMRSLFMDHLTGERVLSYSIVVDEPDFDFPPQHVEP--DGEKIVLL 1545
Query: 892 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP-PHQFDACFMDIQMPEMDGYE 948
+DN+ N ++A LKR G V G++A E+ M P ++ A MD QMP MDG+E
Sbjct: 1546 AEDNSANQRLATVQLKRLGYQADLVTTGEQALEMYMRHPERYLAILMDCQMPVMDGFE 1603
>gi|406920330|gb|EKD58417.1| hypothetical protein ACD_56C00133G0001 [uncultured bacterium]
Length = 846
Score = 239 bits (609), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 175/552 (31%), Positives = 273/552 (49%), Gaps = 93/552 (16%)
Query: 413 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 472
I K+E+ ++ ++ A A AKS FLAT+SHEIRTPMNG++GM D+++DT+LD QQ
Sbjct: 190 ITKMEQMQGELIASQQAALCASQAKSDFLATMSHEIRTPMNGIIGMTDLVLDTDLDEQQQ 249
Query: 473 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 532
DY+ ++S L+++IN++LD +K+E+GKL LE++SFNL A+++ +L + K+ +K +
Sbjct: 250 DYLNIVKSSANGLITIINDILDFSKMEAGKLSLESISFNLHALINSLLKPLAVKADEKRI 309
Query: 533 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592
EL I ++VP + GDPGR RQI+ NL+GN++KFT+ G I E
Sbjct: 310 ELISNIDEKVPLRVQGDPGRIRQILINLLGNALKFTKTGEI------------------E 351
Query: 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 652
L S + +S S +P L+ SV D+G GIP E
Sbjct: 352 LKVSTHEIS---------------------SIAPC---------LLFSVRDSGIGIPEEK 381
Query: 653 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712
Q IF F Q S +R +GGTG+GLSI+ LV M GEI S P+ GSTF
Sbjct: 382 QKSIFEAFTQADTSTTRHYGGTGLGLSITSRLVKLMGGEIWVESTPDNGSTF-------- 433
Query: 713 GSSTSNEHNSQQMNNQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEV 767
H S + P + + F G +AL++D I ++ R + R G++VE
Sbjct: 434 -------HISIPLITAPEQLPAVFDAKQIIGKRALIIDDNEINRRIFREMLTRWGLEVEE 486
Query: 768 VSDQLQCLSQIAS-GSKIINMILVEQEVWEKD--TSVSTLFVNNLRKLGCGFQSKLFLLA 824
L L + S+ ++++V+ + D + TL N L +K+ +L+
Sbjct: 487 EPSALALLENLEKRSSQAFDLLVVDYHMPGMDGFELIETLNRNQRFPL-----AKILMLS 541
Query: 825 NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR--------AMGVGNKGNIRNWELP 876
++ A T + + + + KP+ +L + A ++ NI
Sbjct: 542 SAAMPGLA-TRCQNLGVSTYLTKPIDRYEFFKALNKLFVPDTASASPSSHQENI------ 594
Query: 877 SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACF 936
+++ + IL+ +DN VN K+ L+ G V E G+ A E +FD
Sbjct: 595 -TPAKNIGIRLNILVAEDNEVNQKLICTLLENKGHQVTLAENGQIAFEQFK-ASRFDIVL 652
Query: 937 MDIQMPEMDGYE 948
MD+QMP M G E
Sbjct: 653 MDMQMPVMGGLE 664
Score = 45.1 bits (105), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 874 ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-----MP 928
+LP++ ++G++ LI+DDN +N ++ L R+G + VE A LL
Sbjct: 445 QLPAVFDAKQIIGKRALIIDDNEINRRIFREMLTRWG---LEVEEEPSALALLENLEKRS 501
Query: 929 PHQFDACFMDIQMPEMDGYEMLPCF---ESFLLIAILV 963
FD +D MP MDG+E++ + F L IL+
Sbjct: 502 SQAFDLLVVDYHMPGMDGFELIETLNRNQRFPLAKILM 539
>gi|186682678|ref|YP_001865874.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
gi|186465130|gb|ACC80931.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
Length = 1403
Score = 239 bits (609), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 184/585 (31%), Positives = 300/585 (51%), Gaps = 26/585 (4%)
Query: 378 FKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAK 437
F+Q P + + L IA + + +R ++ + + K++AEAA+ AK
Sbjct: 618 FRQWTPDEIELLEAVAAQLGIALAQAQLLEQETHRREELTLKNFALEQAKRQAEAANRAK 677
Query: 438 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497
S+FLA +SHEIRTPMN V+GM D+L+DT+L QQD+V T ++SG AL+++IN++LD +K
Sbjct: 678 SEFLAMMSHEIRTPMNAVIGMTDLLLDTDLTPQQQDFVETVRSSGDALLTIINDILDFSK 737
Query: 498 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 557
+ESGKLELE F+LRA ++ +SL + K+ K +EL I +VP ++GD R RQ++
Sbjct: 738 IESGKLELEEQPFDLRACVEQAISLLAPKAAQKNIELVYLIQPQVPTQIVGDMTRLRQVL 797
Query: 558 TNLMGNSIKFTEKGHIFVTVYL-VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
NL+ N+IKFTE+G + ++V L + V E + L S L P +
Sbjct: 798 MNLLNNAIKFTERGEVVLSVELGAGDSVKQGENSSPLHPSLVRLR--PSLREAAPTTTLR 855
Query: 617 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
T ++ S +SS I + +++DTG GI E R+F PF Q S++R +GGTG+
Sbjct: 856 TSSRQARPS---ASSESPIQIQFAIKDTGIGITPEKIERLFHPFTQADVSMTRRYGGTGL 912
Query: 677 GLSISKYLVGRM--------KGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 728
GL ISK L M +G +G P S + ++ + + ST + Q+
Sbjct: 913 GLVISKRLSKMMGGTLWVESQGIVGGNPSPRWKSRKSLSSPYSSQGSTFYFTITAQVPAV 972
Query: 729 PNSVSS----EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 784
P + S + QG + L+VD ++ + ++ + L+Q+A G +
Sbjct: 973 PEAEFSNSPMQLQGKRLLIVDDNLTNCQIISLQAESWEMETYAAKSAKEALAQLAQGIQ- 1031
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
++ +++ E+ D TL R+ GC Q+ ++ S+ + V +
Sbjct: 1032 FDIAILDMEMPAMDG--ITLARQIRRQSGC--QNLPLVILTSLGREETFSDFGDVEFAAS 1087
Query: 845 IMKPLRSSMLAASLQRAMG-VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
+ KP++ S L + R +G ++ +I ++ L L H L R IL+ +D VN KVA
Sbjct: 1088 LSKPIKQSQLYDVITRVLGNQPSEASITDFPLVDRHLTHPLPLR-ILLAEDTIVNQKVAL 1146
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L++ G + V G + + L +D MD+ MPEMDG E
Sbjct: 1147 LMLQKIGYSADVVTNGVEVLKALQ-KQPYDLVLMDVHMPEMDGLE 1190
>gi|288942572|ref|YP_003444812.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
gi|288897944|gb|ADC63780.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
Length = 1705
Score = 239 bits (609), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 167/556 (30%), Positives = 271/556 (48%), Gaps = 78/556 (14%)
Query: 401 LVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 460
L G + + + A+VE ++ K+ AE A AKS FLA +SHEIRTPMN ++G+
Sbjct: 940 LAGTVIDISDRKAAEVE-----LLAAKELAEEATQAKSSFLANMSHEIRTPMNAIIGLSH 994
Query: 461 MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 520
+ + TELD Q++Y+ S ++L+ +IN++LD +K+E+GKL++E ++F L ++D++
Sbjct: 995 LALQTELDARQRNYIEKVHRSAESLLGIINDILDFSKIEAGKLDIEHIAFRLEDVMDNLA 1054
Query: 521 SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYL 579
+L K+++KGVEL + VP L+GDP R QI+ NL N++KFTE G I ++V +
Sbjct: 1055 NLVGLKAEEKGVELMFDLPPEVPTALVGDPLRLGQILINLGNNAVKFTEPGGEILISVRV 1114
Query: 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIV 639
+++ AD + L
Sbjct: 1115 MDQ------------------------------------------------GADWVRLGF 1126
Query: 640 SVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699
SV DTG G+ E Q+R+F PF Q S +R +GGTG+GL+IS L M GEI S P
Sbjct: 1127 SVCDTGIGMSAEQQARLFEPFSQADMSTTRKYGGTGLGLTISTRLTELMGGEIRVESAPG 1186
Query: 700 IGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 759
GSTF F G S +E P ++ E ++ LVVD ++ +
Sbjct: 1187 AGSTFGFDVRLGQQSGVVSE---------PARLTLEALSLRILVVDDNATAREILTQMLL 1237
Query: 760 RLGIQVEVVSDQLQCLSQIASGSKI--INMILVEQEVWEKDTSVSTLFVNNLRKLGCG-- 815
G VE + + L ++ ++ +++L++ ++ E D + +R+L C
Sbjct: 1238 AFGFAVESAASGREALDRLRVVDRLEPFDLVLMDWKMPEMDG------IETIRRL-CAQT 1290
Query: 816 --FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV--GNKGNIR 871
Q+ ++ + A+ + + + KP+ SS L ++ A+G G +
Sbjct: 1291 EITQAPALIMVTAYGHEAAHQVAVELGVSGFLTKPVTSSNLLDAIMHAVGRRGGQFTRMP 1350
Query: 872 NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 931
N + S L G +L+V+DN +N ++A L G +V G++A E L +
Sbjct: 1351 NRQEESSEAIAGLRGAHVLLVEDNELNQELALELLVSNGLSVEIAANGREALERLAGESR 1410
Query: 932 FDACFMDIQMPEMDGY 947
FD MD QMP MDGY
Sbjct: 1411 FDGVLMDCQMPVMDGY 1426
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-----MPPHQFDACFMDI 939
L +IL+VDDN ++ L +G AV G++A + L + P FD MD
Sbjct: 1215 LSLRILVVDDNATAREILTQMLLAFGFAVESAASGREALDRLRVVDRLEP--FDLVLMDW 1272
Query: 940 QMPEMDGYEML 950
+MPEMDG E +
Sbjct: 1273 KMPEMDGIETI 1283
>gi|302036186|ref|YP_003796508.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
gi|300604250|emb|CBK40582.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
Length = 1431
Score = 239 bits (609), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 173/530 (32%), Positives = 265/530 (50%), Gaps = 71/530 (13%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
++ K+ AEAA+VAKS+FLA +SHEIRTP+NGVLGM ++L+ T L QQ + T + SG
Sbjct: 754 LVSAKEAAEAANVAKSRFLANMSHEIRTPLNGVLGMTELLLSTSLSAKQQSLLETVRRSG 813
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
AL+ +IN++LD +K+E+GKLELE V F LR ++++ + LF+G + +K +EL +I V
Sbjct: 814 VALLEVINDILDFSKIEAGKLELEQVEFGLRQVVEEAVELFAGSAGNKKLELTYFIPADV 873
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P++L+GD R RQI+ NL+GN+IKFT +G + V L E+ D++ + + ++T G
Sbjct: 874 PDSLVGDAVRLRQILLNLIGNAIKFTAQGEVTVAFALAEQHADTLTLACRV---RDTGIG 930
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
P A + + F DGST
Sbjct: 931 IPDAAQAQLFTAFT--QADGST-------------------------------------- 950
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
+R GGTG+GL+I K LV M GE+G VS P G+TF+FT GS+ +
Sbjct: 951 -----TRRFGGTGLGLAIVKQLVQLMGGEVGLVSAPGQGTTFSFTFTVTRGSAHA----- 1000
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSDQLQCLSQIA 779
P G + L+VD ++ H+Q G V E D L L
Sbjct: 1001 ----AYPPLAERHLAGRQILIVDDMRTNLEILATHLQSWGATVFTAESADDALLQLEHFR 1056
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLR--KLGCGFQSKLFLLANSISSSRANTSTD 837
+ I+M +++ + +D V+ R K +Q+ + +S+ +
Sbjct: 1057 HKQQQIDMAILDLRMPGRDG------VDLARSIKEQAAYQNLPLIALSSVERLSDESDVT 1110
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
S + KP+R S+L L RA+G G+ G + + + + R + R IL+ +DN V
Sbjct: 1111 HRLFHSFLRKPVRQSLLRDCLTRALG-GSAGPVPHSPEFAATPRPRVDAR-ILLAEDNPV 1168
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
N VA++ L+ G + G+ A E +FD MD QMPEMDG+
Sbjct: 1169 NQDVASSMLEMLGCRITIAPNGRAAVEAAT-TGRFDLILMDCQMPEMDGF 1217
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH----- 930
P ++ RHL GR+ILIVDD NL++ A L+ +GA V E A LL H
Sbjct: 1003 PPLAERHLA-GRQILIVDDMRTNLEILATHLQSWGATVFTAESADDA--LLQLEHFRHKQ 1059
Query: 931 -QFDACFMDIQMPEMDGYEM 949
Q D +D++MP DG ++
Sbjct: 1060 QQIDMAILDLRMPGRDGVDL 1079
>gi|430748143|ref|YP_007207272.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
gi|430019863|gb|AGA31577.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
Length = 1519
Score = 239 bits (609), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 161/527 (30%), Positives = 264/527 (50%), Gaps = 69/527 (13%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KS+FLA +SHEIRTP+NG++GM ++ +DTEL QQ+Y+ + S L+++IN++LD +
Sbjct: 873 KSEFLANMSHEIRTPLNGIIGMTELALDTELTPDQQEYLGMVKLSADHLLTVINDILDFS 932
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+GKL+L+ + F+LR LDD ++ + ++ KG+ELA +++ VP+ L+GDP R Q+
Sbjct: 933 KIEAGKLDLDIIDFHLRDALDDTMATLAMRAHKKGLELADHVAADVPDVLVGDPHRLCQV 992
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+ NL+GN+IKFTE+G E V +EV+
Sbjct: 993 VVNLIGNAIKFTERG----------EAVLRVEVQ-------------------------- 1016
Query: 617 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
S S ++L +V DTG GIP E Q ++F F Q S +R +GGTG+
Sbjct: 1017 ------------SRSEQGVSLHFAVSDTGIGIPPEQQQKLFKAFSQADTSTTRKYGGTGL 1064
Query: 677 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 736
GL+IS LV M GEI S GS F FT FG ++ +P V
Sbjct: 1065 GLAISARLVQLMGGEIWLESQAGQGSIFHFTLPFGLVCGPV----ARARPVEPEQV---- 1116
Query: 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSKIINMILVEQE 793
G+ L+VD ++ + G++ V+ + + L++ + ++L++
Sbjct: 1117 HGLPVLIVDDNATNRRILEEMLTNWGMKPTTVAGGREAIATLAEARGAGRPFALVLLDAM 1176
Query: 794 VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 853
+ D +++ S L +L+++ A + + + + +MKP+R S
Sbjct: 1177 MPGMD---GFTLAEQIKQDSALTGSTLMMLSSANRREDAARCQE-LGVATYLMKPIRESS 1232
Query: 854 LAASLQRAMGVGNKGNIRNWE-----LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKR 908
L ++ +G + +P+ S R ++L+ +DN +N ++A A LK+
Sbjct: 1233 LLDAIMTTLGASMSDEPYGAQPAAPAMPNGSRRTWKRMLRLLLAEDNAINQRLAMALLKK 1292
Query: 909 YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFES 955
G VV V G++A M +FDA MD+QMPEMDG+E S
Sbjct: 1293 QGHQVVVVNNGREALA-AMNGSRFDAVLMDVQMPEMDGFEATAAIRS 1338
>gi|443475197|ref|ZP_21065154.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
gi|443019984|gb|ELS33998.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
Length = 1403
Score = 238 bits (608), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 177/559 (31%), Positives = 264/559 (47%), Gaps = 80/559 (14%)
Query: 405 IFQATV--NRIAKVEEDYHGMMELKKKAEAADVA---KSQFLATVSHEIRTPMNGVLGML 459
++QAT+ + E+ Y +ELK+ A++A KS FLAT+SHEIRTPMN VLGM
Sbjct: 709 LYQATLLEQETLRREQLYLQNVELKEARHQAEIATKMKSAFLATMSHEIRTPMNAVLGMT 768
Query: 460 DMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 519
+L DT+L Q+D+V T + SG+ L++LINE+LD +K+E+ ++ELE +SF+L +++V
Sbjct: 769 GLLADTKLSPLQRDFVETVRISGENLLTLINEILDFSKLEANEMELEEISFDLNTCVEEV 828
Query: 520 LSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL 579
L + +Q+K +ELA I VP L GD R RQI+TNL+ N+IKFT +G + + V L
Sbjct: 829 TDLLAMLAQEKKLELAALIHQNVPTYLCGDVARLRQILTNLVSNAIKFTLQGEVIIKVSL 888
Query: 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIV 639
EE ++E
Sbjct: 889 KEETESIAKIE------------------------------------------------F 900
Query: 640 SVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699
V DTG GI LE+Q ++F PF QV S +R +GGTG+GL+I K +V M GEIG S
Sbjct: 901 RVIDTGIGISLESQKKLFQPFTQVDASTTRKYGGTGLGLAICKQIVDLMGGEIGIDSEEG 960
Query: 700 IGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 759
GS F F F SS ++ + + ++ L+VD K+ Y +
Sbjct: 961 KGSQFWFQISFVKQSSA-------EIKQLEPRREVDLKDVRVLIVDDSETNCKILTYQLT 1013
Query: 760 RLGIQVEVVSDQLQCLS----QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815
++V+ V + +S IA G + IL Q S+ + K
Sbjct: 1014 AWQMRVDAVKNASHVISILQAAIAEGDRYQLAILDMQMPDLDGESLGSQI-----KADPN 1068
Query: 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNK------GN 869
+ ++ S++ + ++KP++ S L L + + G
Sbjct: 1069 LKDTKLIMLTSLNQGGGINRVKELGFEFYLVKPIKQSRLLDVLMQVISTNPHYQNPVTGA 1128
Query: 870 IRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 929
+R + P L KILI +D+ +N KVA L+ +G GK+ LL
Sbjct: 1129 LRTADRPITRTSKL----KILIAEDSLINQKVALHQLRSFGYDADVAGNGKEVLALLECI 1184
Query: 930 HQFDACFMDIQMPEMDGYE 948
H +D MD QMPEMDGYE
Sbjct: 1185 H-YDIILMDCQMPEMDGYE 1202
>gi|34497953|ref|NP_902168.1| hybrid sensory kinase [Chromobacterium violaceum ATCC 12472]
gi|34332809|gb|AAQ60169.2| probable hybrid sensory kinase [Chromobacterium violaceum ATCC
12472]
Length = 738
Score = 238 bits (608), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 167/534 (31%), Positives = 259/534 (48%), Gaps = 77/534 (14%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
M E K+ AE A AKS FLA +SHEIRTPMN ++GM + + T+LD Q++Y+ +G
Sbjct: 1 MREAKQMAEQATRAKSLFLANMSHEIRTPMNAIIGMSYLALRTDLDDQQRNYIGKIHNAG 60
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
+L+ +IN++LD +KVE+GKLELEA F L +LD V +L + K+ DKG+EL + V
Sbjct: 61 TSLLGIINDILDFSKVEAGKLELEAQPFWLDDVLDGVSALVAQKAADKGLELLFETAGDV 120
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P+ L+GD R Q++TNL GN+IKFTE G + + + VE + D ++++
Sbjct: 121 PQGLVGDALRLGQVLTNLAGNAIKFTETGQVSIIIGQVERIGDKVQLK------------ 168
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
V DTG G+ E QSR+F F Q
Sbjct: 169 ------------------------------------FCVHDTGIGMSEEQQSRLFQAFSQ 192
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
S +R GGTG+GL+I+K LV M G + S P GS+F F+ G + T
Sbjct: 193 ADGSTTRRFGGTGLGLTIAKRLVELMGGSMLVESAPGWGSSFIFSCWLGVSAET------ 246
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG- 781
+++ S+ E +G++ LVVD V +++LG +V+ + + LS++
Sbjct: 247 ---DSRRQSLPKEIRGLRVLVVDDNQSAVDVLCAQLKQLGFEVQGCLNGHEALSKVRQDC 303
Query: 782 -SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
K ++ V+ + E D + +R++ + ++ +
Sbjct: 304 LQKPFDVAFVDWMMPEMDG------LEAVRRMRQVSRKMRIVMVTAFGRDEIRVKARAAG 357
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW----ELPSMSLRHLLLGRKILIVDDNN 896
+ ++KP+ S L L G G G + + +LP HLLL V+DN
Sbjct: 358 CDAFMVKPVNLSQLYDVLLEVFGFGRSGGLSLFDETDQLPRFDGAHLLL------VEDNR 411
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMP--PHQFDACFMDIQMPEMDGYE 948
+N ++A L+ GA + G+ A + L+ P FDA MD+QMP MDG E
Sbjct: 412 INQQIAIELLEGTGATITVAANGQAALDKLLAYGPKAFDAVLMDVQMPVMDGIE 465
>gi|443474974|ref|ZP_21064938.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
gi|443020231|gb|ELS34214.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
Length = 1137
Score = 238 bits (608), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 174/533 (32%), Positives = 263/533 (49%), Gaps = 80/533 (15%)
Query: 424 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGK 483
+E K AEAA+ AKSQFLA +SHEIRTPMN V+GM D+L DT L Q+ YV T + G+
Sbjct: 488 LEAAKFAEAANQAKSQFLAVMSHEIRTPMNAVIGMTDILQDTPLSPQQRQYVNTIRQGGE 547
Query: 484 ALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVP 543
L+S+IN +LD +++ESGK ELE F L+ +D+V L + + +K +EL I +P
Sbjct: 548 VLLSVINNILDFSRIESGKFELEEQPFYLQKCVDEVFELMTSRMAEKSLELFALIDPNIP 607
Query: 544 ETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGY 603
+ +IGD R RQI+ NL+ N+IKFT G I +T+
Sbjct: 608 QQIIGDYSRLRQILVNLVSNAIKFTASGEIIITI------------------------NS 643
Query: 604 PVADR-CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
+ DR H ++ L+ V DTG GI EA R+F F Q
Sbjct: 644 QLVDRDSHRYE-----------------------LLFEVSDTGIGILPEAIGRLFQAFSQ 680
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
SI+R +GGTG+GL+I K L M G+IG S GSTF+F+ + + + + +S
Sbjct: 681 ADSSINRQYGGTGLGLAICKQLCELMGGKIGVQSQVGEGSTFSFSIM---AQAIAFDRHS 737
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
+ M +++ E +G + L V P + + I ++ ++ L + + S
Sbjct: 738 ELM-----AIAPEIKGKRILSVHHSPRFQTAISLYTDKWEIDIKFAYSAIEALQFLTNES 792
Query: 783 KIINMILVEQEVWEKDT--SVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
+ +L+E+++ E D+ N++ + + LF SS NT++ +
Sbjct: 793 --FDAVLIERQLAEADSPEGFGLELAQNIQAVFPNLKLVLF-------SSINNTNSIPIK 843
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGN---KGNIRNWELP----SMSLRHLLLGRKILIVD 893
I+KPL +S L + N GN N+ P + + R+ L KILI +
Sbjct: 844 FADYIIKPLSASKLYQAFVNIFSTQNFKLSGN--NFSAPILDANFAKRYPL---KILIAE 898
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
DN +N K+ L+ G V VE G+KA + + +D FMDIQMP MDG
Sbjct: 899 DNPINQKILWLMLETLGYNVASVENGQKALNAI-ANNAYDLIFMDIQMPIMDG 950
>gi|392549115|ref|ZP_10296252.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas rubra ATCC
29570]
Length = 925
Score = 238 bits (608), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 166/546 (30%), Positives = 269/546 (49%), Gaps = 74/546 (13%)
Query: 404 HIFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 460
HI QAT + +E+ ++L KK+A+ A+ KS FLA +SHE+RTP+NGV+G
Sbjct: 253 HIDQATCDYRETLEQYETQNIQLNIAKKEAQVANRVKSDFLAKMSHELRTPLNGVIGFTR 312
Query: 461 MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 520
L T L+ Q+DY+ T + S +L+++I+++LD +K+E+G +ELE++ F LR +++V+
Sbjct: 313 QLYKTPLNKHQKDYLDTIELSANSLLTIISDILDFSKLEAGAMELESIQFQLRDAVNEVM 372
Query: 521 SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580
+L + + +K +EL++ I+ +VP+ L+GDP RF+Q++ NL+ N++KFTEKG + V
Sbjct: 373 TLLAPSAYEKQLELSIAINRQVPDNLVGDPTRFKQVLINLISNAVKFTEKGSVKV----- 427
Query: 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 640
D H KG D TS L++S
Sbjct: 428 --------------------------DISHRLKG------DSQTS-----------LLIS 444
Query: 641 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700
V DTG GI E Q +FTPF Q SI+R GGTG+GL I+K++V M G I S P
Sbjct: 445 VSDTGLGIAQEKQDTLFTPFAQADSSITRKFGGTGLGLIITKHIVEAMSGRITLNSAPGN 504
Query: 701 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 760
GS FTF A+F S ++ + +P + + L +P+ + ++
Sbjct: 505 GSCFTFNAIFNLPSRLFDD----DLPTKP------LENKRVLYFEPQEHTRNAVQAQLED 554
Query: 761 LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 820
+QV ++ + + + ++ L+ D ++ R++ L
Sbjct: 555 WAMQVTCCKNEDTFFAALEQEFR-YDICLIGNMATVDDMQTVKAYITQAREMA----DYL 609
Query: 821 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL 880
+L+ N+IS + S G + I KP+ L L + + + + L
Sbjct: 610 YLMVNTISHN-MRESLIGSGADACISKPMHHRKLCDMLAAPYRLDHP----SVSIDDTDL 664
Query: 881 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 940
HL L K++I DDN+ NLK+ L+ + G +A L ++D FMDIQ
Sbjct: 665 AHLPL--KVMIADDNDANLKLLYTLLEEQVDTIDTAHNGAQAVSLC-KSQKYDLIFMDIQ 721
Query: 941 MPEMDG 946
MP MDG
Sbjct: 722 MPIMDG 727
>gi|344341478|ref|ZP_08772397.1| PAS/PAC sensor hybrid histidine kinase [Thiocapsa marina 5811]
gi|343798598|gb|EGV16553.1| PAS/PAC sensor hybrid histidine kinase [Thiocapsa marina 5811]
Length = 780
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 162/549 (29%), Positives = 260/549 (47%), Gaps = 74/549 (13%)
Query: 404 HIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM 463
+F A V + + + + +A +AD AKS+FLA +SHEIRTPMNGVLGML++L
Sbjct: 215 RVFTAVVRDLTETRRQMDALARARDEALSADRAKSEFLAMMSHEIRTPMNGVLGMLELLR 274
Query: 464 DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 523
D++L QQD++ TA+ SG L+++IN++LD +K+E+GKL+L+ + +LR ++++ L
Sbjct: 275 DSQLSHQQQDFIATAEKSGGLLLTVINDILDFSKIEAGKLDLQEIELDLRNTVEEITGLV 334
Query: 524 SGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 583
+ + + +E+A ++ VP L+GDP R RQI+ NLMGN++KFT+ G + V V L +
Sbjct: 335 ASGVRARPIEVASFVHSDVPRLLVGDPYRIRQILMNLMGNAVKFTDCGEVVVRVGLDRQT 394
Query: 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 643
+ V E+S D
Sbjct: 395 AEGWVVRFEVS------------------------------------------------D 406
Query: 644 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 703
TG GI + + +F PF Q S +R GGTG+GL ISK L M G+IG S P +GS
Sbjct: 407 TGIGIDPQTVATLFRPFTQADASTTRRFGGTGLGLVISKRLAMLMGGDIGVESTPGVGSR 466
Query: 704 FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 763
F FT + S P ++ G++ L+VD + H+ R G
Sbjct: 467 FWFTLSLKSAESA------------PVYEETDLNGIRTLIVDDNATNRLILENHLARWGA 514
Query: 764 QVEVVSDQLQCLSQIASG---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 820
+ E D Q L + G + ++ +++ ++ D + G ++L
Sbjct: 515 RTECAEDGPQALEALQRGLEQDRPFDLAILDMQMPGMDGIELAHRIKGDDAFGA---TRL 571
Query: 821 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL 880
+L+ S V I ++KP+R +L + + +G+ LP +
Sbjct: 572 IMLS---SLGYPGPEARRVGIEVTLLKPVREILLHDAAAKVLGMSRPD---AGILPVTAK 625
Query: 881 RHL-LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939
R ++L+ +DN VN KV L+R+G G+ A E +FD MDI
Sbjct: 626 RPTRRFDARVLVAEDNAVNQKVVTMMLRRFGIEPGIAPDGQAAIE-AAAQVRFDLILMDI 684
Query: 940 QMPEMDGYE 948
QMP++ G+E
Sbjct: 685 QMPKLSGHE 693
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM----PPHQFDACFMDI 939
L G + LIVDDN N + L R+GA C E G +A E L FD +D+
Sbjct: 487 LNGIRTLIVDDNATNRLILENHLARWGARTECAEDGPQALEALQRGLEQDRPFDLAILDM 546
Query: 940 QMPEMDGYEM 949
QMP MDG E+
Sbjct: 547 QMPGMDGIEL 556
>gi|414079219|ref|YP_007000643.1| multi-sensor hybrid histidine kinase [Anabaena sp. 90]
gi|413972498|gb|AFW96586.1| multi-sensor hybrid histidine kinase [Anabaena sp. 90]
Length = 1311
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 169/527 (32%), Positives = 265/527 (50%), Gaps = 71/527 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+++AE+A AKS FLA +SHEIRTPMNGVLGM +L++T L+ QQD++ T + SG AL+
Sbjct: 768 RQEAESALQAKSSFLANMSHEIRTPMNGVLGMTSLLLETPLNPEQQDFLETVRTSGDALL 827
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
SLINE+LD +K+E+GK+ LE + FNL + +V+ L + ++ DKG+E+A I VP +
Sbjct: 828 SLINEILDLSKLEAGKMMLETLDFNLSTCIQEVIELLAPQAHDKGLEIAALIPADVPIYI 887
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD R RQ+I NLMGN IKFT +G + V + L+ E D+ ++
Sbjct: 888 QGDASRLRQVIMNLMGNGIKFTSQGKVIVQLELISETDDTATIQ---------------- 931
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
++ DTG GI E ++ +F PF QV S
Sbjct: 932 --------------------------------FAIIDTGIGITTEDKNNLFQPFTQVDAS 959
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R +GGTG+GL+I + LV M G+IG S GS F F F + +++ Q+
Sbjct: 960 ITRKYGGTGLGLAICQQLVTLMGGKIGLNSEIGKGSKFWFNLSFTKQPESVSQNQDYQIL 1019
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ---LQCLSQIASGSK 783
+Q + LVV+ I ++ + G+ ++ V L L A+
Sbjct: 1020 SQ----------RRLLVVNNNTISREILHHQAISWGMHIDEVDSAIAGLAALETAATQQM 1069
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
++ +++ ++ E D TL + +RK L +L + + D + S
Sbjct: 1070 PYDIAIIDMQMPEIDG--LTLGI-QIRKNPAIANVPLIMLTCTNQRDEVKKALD-IGFIS 1125
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGN----IRNWELPSMSLRHLLLGRKILIVDDNNVNL 899
++KP++ + L ++ +G +K N N ELP++S ++ K+L+ +DN VN
Sbjct: 1126 YLVKPIKPTRLLDTIMNIVGSQSKINNSQIAINEELPAISNKN-TSKLKLLLAEDNLVNQ 1184
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
KV L+ G V G++ ELL +D FMD QMP +DG
Sbjct: 1185 KVFLKQLQNLGYQADAVANGQEVLELL-DKIAYDLIFMDCQMPILDG 1230
>gi|262165591|ref|ZP_06033328.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
gi|262025307|gb|EEY43975.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
Length = 1325
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 169/530 (31%), Positives = 263/530 (49%), Gaps = 78/530 (14%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ E K A+A AK FLA +SHEIRTPMN +LGM + ++T+LD TQ+ YV S
Sbjct: 593 LREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINESA 652
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
K L+ +IN++LD +K+E+GKL++E + F+L +LD+V ++ S K+Q+KG+E + I +
Sbjct: 653 KNLLGIINDILDFSKIEAGKLDVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDPHI 712
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P LIGDP R Q++ NL GN++KFT++G I ++ +
Sbjct: 713 PLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARV----------------------- 749
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
+ N+ + L+ +V+DTG GI E S +F F Q
Sbjct: 750 -------------RQLNEQQ------------VMLLFAVKDTGIGIAQEKLSDLFNAFSQ 784
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 785 ADNSITRQYGGTGLGLSISKQLVELMGGQISVHSEEGKGSTFEFSVVCGLQEAKMRD--- 841
Query: 723 QQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA 779
++ G+ + LVVD + + + V VS+ + LS++
Sbjct: 842 ---------IAQPLHGLANKRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSELQ 892
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTST 836
K +M+ + W + ++ LG +K FL+ I+ N+
Sbjct: 893 --HKPFDMLFAD---WNMPGMNGIELLTRVKSLGLRDHTKCFLVTAYGRDINLDSENSKL 947
Query: 837 DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 896
I ++I+KP+ S L ++ + G+ + + +N ELP S R G+K+L+V+DN
Sbjct: 948 ----IDALIVKPVNPSNLLDAIVTSYGIDHVRHKQN-ELPQHS-RPNFTGQKLLLVEDNE 1001
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G +V G++A E L FD MD+QMP MDG
Sbjct: 1002 VNQEVALGLLEETGLSVTIANNGQEALEKL-ENADFDLVLMDMQMPVMDG 1050
>gi|383756738|ref|YP_005435723.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus
IL144]
gi|381377407|dbj|BAL94224.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax gelatinosus
IL144]
Length = 1182
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 165/530 (31%), Positives = 259/530 (48%), Gaps = 88/530 (16%)
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489
AEAA AKS FLAT+SHEIRTPMN ++GM + ++T+L+ Q+DY+ Q +G++L++ I
Sbjct: 532 AEAASAAKSNFLATMSHEIRTPMNAIIGMTALALNTDLNPRQRDYLHKIQTAGRSLLATI 591
Query: 490 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 549
N++LD +K+E+GKLE+E F L +L +V + ++ KG+E V + VP LIGD
Sbjct: 592 NDILDFSKIEAGKLEIERREFELEEVLGEVCDQLAARAAAKGLEFVVDLGTEVPRRLIGD 651
Query: 550 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 609
P R Q++ NL GN++KFTE+G + V +++ + D + + RC
Sbjct: 652 PLRLGQVLLNLCGNAVKFTEQGGVCVRLHVQRQTEDCVML------------------RC 693
Query: 610 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669
+V+D+G G+ E +SR+F F Q SI+R
Sbjct: 694 ------------------------------AVQDSGIGLDAEQRSRLFQSFQQADSSITR 723
Query: 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA----VFGNGSSTSNEHNSQQM 725
+GGTG+GL I+K LV GEIG S P GSTF FTA V G G+ T +
Sbjct: 724 RYGGTGLGLVIAKRLVELQGGEIGVDSEPGAGSTFWFTAHLGVVAGRGARTWGD------ 777
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC---LSQIASGS 782
+ +G +ALV D P +V ++ G+QV + D C L + +
Sbjct: 778 --------AALRGRQALVADAHPRAREVMVSMLRGFGLQVTLAEDWAACARLLREADAAG 829
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
+ +++ ++E ++ T+ L L +L +A + S +
Sbjct: 830 RGVDVAVLECQLA---TAGGATPATALEALALQHPPRLVAVAGPNVVAEDEDSAE----R 882
Query: 843 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE------LPSMSLRHLLLGRKILIVDDNN 896
+V+ +P+ S L +L R + + +W + L GR++L+ +DN+
Sbjct: 883 AVLHQPVTPSRLLDTLMRLL-----VDPTSWRPASAAAPAADGGPAALRGRRVLLAEDND 937
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+N +VA L G V E G A E + H +D MD+QMPEMDG
Sbjct: 938 LNQQVAVELLSELGLEVDVAENGLVAVEKVRSTH-YDLVLMDMQMPEMDG 986
>gi|87308947|ref|ZP_01091085.1| Response regulator receiver:ATP-binding
region,ATPase-like:Histidine kinase A, N-terminal:Hpt
[Blastopirellula marina DSM 3645]
gi|87288290|gb|EAQ80186.1| Response regulator receiver:ATP-binding
region,ATPase-like:Histidine kinase A, N-terminal:Hpt
[Blastopirellula marina DSM 3645]
Length = 837
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 176/572 (30%), Positives = 282/572 (49%), Gaps = 75/572 (13%)
Query: 380 QKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQ 439
+ A + LAI G + S+ H+ + + + +D + K+ A+AA+ AK Q
Sbjct: 121 RDAAYEPLAIRRQDGTFRVVSV--HMLIQAQSHLLAIAKDV--IQSQKESADAANRAKGQ 176
Query: 440 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVE 499
FLA +SHEIRTPMNG++GM ++L++TEL Q +Y++ + S LVS+IN++LD +K+E
Sbjct: 177 FLANMSHEIRTPMNGIIGMTELLLETELAPQQHEYLQMIKTSADCLVSVINDILDFSKIE 236
Query: 500 SGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITN 559
+GKLE+E++ F LR L D++ + ++ KG+EL ++ VP + GDPGR RQI+ N
Sbjct: 237 AGKLEIESIPFQLRENLGDLMKTLAFRAHGKGLELVAHVRPDVPWRMTGDPGRLRQILVN 296
Query: 560 LMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 619
L+GN+IKFTE G I V V +D I
Sbjct: 297 LVGNAIKFTEHGEIVVRVD-----IDEI-------------------------------- 319
Query: 620 QDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLS 679
S D + L +V DTG GIP A +IF F Q + +R GGTG+GLS
Sbjct: 320 ----------SETDAL-LHFTVCDTGIGIPEAALQKIFAAFEQADGTTTRKFGGTGLGLS 368
Query: 680 ISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGM 739
I LV M G+I S ++GS F FTA G +++ +E + + + +
Sbjct: 369 ICSRLVELMHGKIWVESQVHVGSQFHFTAQLGIDANSYDERHIP---------PDDCRQL 419
Query: 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS--GSKIINMILVEQEVWEK 797
L+VD ++ + G+Q V+ ++ +S A S +++++Q++
Sbjct: 420 NVLIVDDNDTCGEIIAEMLANWGMQPTVIGGAVEAISLYAEEVTSPKFQLLIIDQQMPVL 479
Query: 798 DTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAAS 857
+ T + ++K G +K LL + + T+ + +++ KP++ S L +
Sbjct: 480 E---GTELLERIQKSPRGAAAKSILLTTG-TFDKEPTNPLQARVDAILSKPIKQSDLFDT 535
Query: 858 LQRAMGVGNKGNIRNWEL---PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVV 914
L MG G G++ P + GR+IL+ +DN VN K+A L++ G V
Sbjct: 536 LMNVMGHGVAGDLATQNAGAEPKLG----SWGRRILLAEDNLVNQKLAVLLLEKRGHLVT 591
Query: 915 CVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
GK+A E FD MD+QMP +DG
Sbjct: 592 VASDGKQAVE-AWKEGGFDLVLMDVQMPILDG 622
>gi|254443048|ref|ZP_05056524.1| Two component regulator three Y motif family [Verrucomicrobiae
bacterium DG1235]
gi|198257356|gb|EDY81664.1| Two component regulator three Y motif family [Verrucomicrobiae
bacterium DG1235]
Length = 1320
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 171/541 (31%), Positives = 268/541 (49%), Gaps = 76/541 (14%)
Query: 412 RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQ 471
R +++E + K+A+ A AKSQFLA +SHEIRTPMNGV+GM +L DT+L TQ
Sbjct: 789 RTRELDETNDELRASVKEAKKAGQAKSQFLANMSHEIRTPMNGVMGMCTLLNDTQLSNTQ 848
Query: 472 QDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKG 531
+DYV T ++S + L+++IN++LD +K+E+GKL++E + F+L +++DVL LFS + K
Sbjct: 849 RDYVSTIRSSSETLLTIINDILDFSKIEAGKLQIETIPFDLVDLVEDVLDLFSQHLEQKK 908
Query: 532 VELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVET 591
++L +I+ V IGDP R RQI+ NL+GN+IKFT G I++++
Sbjct: 909 LDLVHHIAASVSTQRIGDPTRIRQILVNLVGNAIKFTTSGDIYISI-------------- 954
Query: 592 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLE 651
S D + + V D+G GI
Sbjct: 955 -------------------------------------ESGDDPDEITIEVRDSGIGIDQR 977
Query: 652 AQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711
+ +F PF Q SI+R +GGTG+GLSISK L M G + S +GS+F FT
Sbjct: 978 KLNDLFQPFSQEDESITRKYGGTGLGLSISKMLAEIMHGRLWAESEIGVGSSFFFTIKTP 1037
Query: 712 NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSD 770
S++N ++ F+G + LV +P P+ ++ I+ +E +S+
Sbjct: 1038 VDKSSTNTE----------AIPENFRGKRILVCEPHPLNRHSLLETLRLWNIEPIEALSE 1087
Query: 771 QLQCLSQIASGSKIINMIL-VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 829
+ C +A I + L + + K+T + ++R ++ + LLA+S
Sbjct: 1088 KEAC-KTLAKDHAIDALFLGANSDDFTKET------IESIRSEAKRYKLPVVLLASSKLK 1140
Query: 830 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR-- 887
T V ++ KPLR L +L K ++N + + L+ + +
Sbjct: 1141 GEI-TYKPQVDALKILAKPLRRKQLKRAL--CFFFDKKTTVKNAKRSTRVLKKIPNSKSL 1197
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
+IL+V+DN VN KVA LKR G + G + E + H +D MD+QMPEMDG
Sbjct: 1198 RILVVEDNPVNQKVARLLLKRLGFQIDLAGNGIEGVESVTRQH-YDIVLMDVQMPEMDGL 1256
Query: 948 E 948
E
Sbjct: 1257 E 1257
>gi|430748007|ref|YP_007207136.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
18658]
gi|430019727|gb|AGA31441.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
18658]
Length = 1098
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 169/546 (30%), Positives = 271/546 (49%), Gaps = 86/546 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K AE A AKS FLAT+SHEIRTPMN ++GM ++ +DT+L Q+ Y+ + S ++L+
Sbjct: 430 KDAAEQATQAKSTFLATMSHEIRTPMNAIIGMTELTLDTDLTPEQRQYLELVKESSESLL 489
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+LIN++LD +K+E+GKL+LE++ F+L L + + + ++ K +ELA +I+ VPETL
Sbjct: 490 TLINDILDLSKIEAGKLDLESIDFSLHESLGNTMKALALRAHKKRLELAYHIAPDVPETL 549
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDPGR RQI+ NL+GN+IKFTE G + V VE E
Sbjct: 550 VGDPGRLRQIVVNLVGNAIKFTEHGEVVV------------HVEKE-------------- 583
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
S +AD + L V DTG GIP E Q IF F+Q S
Sbjct: 584 ----------------------SQTADEVCLHFRVTDTGVGIPRERQDLIFDAFIQADSS 621
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS---TSNEHNSQ 723
+R +GGTG+GL+IS L+ M+G + S GSTF FT G + T + S
Sbjct: 622 TTRQYGGTGLGLTISSRLIALMRGRVWVESEAGQGSTFHFTMRLGVRKAPGITRDSAGST 681
Query: 724 QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI---AS 780
++N P LVVD + + + ++ + V+D L+++ A+
Sbjct: 682 LVDNLP-----------VLVVDDNATNRLILEEILTKWRMRPKAVADGPSALAEMKRAAA 730
Query: 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
++L + + D + ++ +S L +L+++ S + +
Sbjct: 731 AGDPYALVLADAMMPGMD---GFTLLEQIKAHPELARSTLMMLSSADQSGDVDRCRR-MG 786
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVG----NKGNIRN-------WELPSMSLRHLLLGRKI 889
+ + ++KP++ S L ++ ++G +G++ N +LP+ S G +I
Sbjct: 787 VNAYLVKPIKRSELLDAIVTSLGTSGVADGRGDLANRVSRLEPGDLPAPS-----RGLRI 841
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEM 949
L+V+DN VN +A L++ G V+ GK+ +FD MD+QMPEMDG E+
Sbjct: 842 LLVEDNPVNQTLATILLEKRGHKVIVACNGKEGLA-AWEKQEFDLILMDVQMPEMDGLEV 900
Query: 950 LPCFES 955
C +
Sbjct: 901 TACIRA 906
>gi|383764048|ref|YP_005443030.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381384316|dbj|BAM01133.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 731
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 169/550 (30%), Positives = 275/550 (50%), Gaps = 85/550 (15%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
++E+ L +AEAA AKS+FLA +SHEIRTP+N V+GM +L+D+ L Q+++
Sbjct: 185 QLEQALEQARRLAVEAEAASRAKSEFLANISHEIRTPLNAVIGMTTLLLDSALTAEQREF 244
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
T + SG+AL+SL+N+VLD +K+E+G+LELE + F+ +++ +SLF+ ++ KG+EL
Sbjct: 245 AETIRISGEALLSLLNDVLDFSKIEAGRLELERIPFDAMKCVEEAVSLFARQASAKGIEL 304
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ + +P+ ++GDP R RQI+ NL+ N++KFT +G I V+V+ +E + +S
Sbjct: 305 VLLPENVLPDRVMGDPVRLRQILINLVNNAVKFTHEGEIVVSVW--------VEWDAAMS 356
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
S + P C L SV DTG GIP E +
Sbjct: 357 SPAEAMESVP----C--------------------------TLRFSVRDTGVGIPAERRG 386
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
R+F F QV S +R +GG+G+GL+I++ L M G++ S P +GSTF FT
Sbjct: 387 RLFQAFSQVDSSTTRKYGGSGLGLAIARNLCRLMGGDMWVESEPGVGSTFFFTV------ 440
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 774
S+ + P+ S F G LV+D K + +RLG++ V+ + +
Sbjct: 441 ------RSEAVAVTPSYQESPFAGRILLVLDDNRAARKAFMFWAERLGMKAVAVASEEEA 494
Query: 775 LSQIASGSKIINMILVEQEVWEKDTSVST-LFVNNLRKLGCGFQSKLFLLANSISSSRA- 832
+ + ++ LV+ ++ +S L N+ + Q N I +
Sbjct: 495 FQILEEA--LPDLALVDGDLSPPSAPLSMHLRGRNIPAIFTTIQQ------NGIQQNETQ 546
Query: 833 --NTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH-------- 882
N + + + I + KP+ + L ++RA+G +LPS+ +
Sbjct: 547 HQNAADNDLRIEIWLRKPVFFASLLEQVRRALG----------QLPSVPEKRRSIASRLD 596
Query: 883 LLLGRK----ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938
LG++ IL+V+DN VN KVA L+R G G +A ++D MD
Sbjct: 597 ATLGQRRPLSILLVEDNPVNQKVALMMLRRLGYTPDLATNGAEAVA-AQQRREYDLVLMD 655
Query: 939 IQMPEMDGYE 948
+ MPEMDG+E
Sbjct: 656 LHMPEMDGFE 665
>gi|114566147|ref|YP_753301.1| signal transduction histidine kinase-like protein [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|114337082|gb|ABI67930.1| multi-sensor hybrid histidine kinase [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 1442
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 167/559 (29%), Positives = 269/559 (48%), Gaps = 86/559 (15%)
Query: 405 IFQATVNRIAKVEED---YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDM 461
I +A N IA+ E + + K+ AE+A+ AKS FLA +SHEIRTPMNG+LG L++
Sbjct: 784 ILKAFSNSIAEAIERSQMEQKLAQAKEIAESANYAKSLFLANMSHEIRTPMNGILGFLEL 843
Query: 462 LMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLS 521
L +TEL QQDYV+ A + + L+ LIN++LD +K+E+GKL +E + F +R +++D +S
Sbjct: 844 LGETELSTEQQDYVQEAHRASEILLYLINDILDFSKIEAGKLAMEEIPFRVRTVVEDAVS 903
Query: 522 LFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 581
L + K+++KG+E+ I VP+ ++GDP R RQI+ NL+ N++KFT G I V V +
Sbjct: 904 LQAPKAREKGLEMHTLIKSNVPDEVVGDPARLRQILNNLLSNAVKFTHTGEILVIVETIN 963
Query: 582 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSV 641
E D E+ E+S
Sbjct: 964 ESSDKAEIAFEVS----------------------------------------------- 976
Query: 642 EDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 701
D+G GI E ++F PF Q S +R +GGTG+GL+IS LV M+G + S G
Sbjct: 977 -DSGIGIAPEDMEKLFQPFTQADASTTRKYGGTGLGLAISYELVRLMEGTMQVKSKLGQG 1035
Query: 702 STFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL 761
S F FTA F G + +P +E +G + L+VD K+ R +++
Sbjct: 1036 SKFYFTACFKPGLRKDT------LPFEP----AELKGARVLIVDDNSSNRKIIRTYLE-- 1083
Query: 762 GIQVEVVSDQLQCLSQIA-SGSKIINMILVEQEVWEKDTSVS--TLFVNNLRKLGCGFQS 818
QCL + + S K I ++L V D + + N +L ++
Sbjct: 1084 ---------DAQCLVEESDSAEKAITILLSASAVKSFDVVIVDFQMPAMNGHELAAALKA 1134
Query: 819 -------KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 871
L +L ++ A + + + KP++ L + +G+ + ++
Sbjct: 1135 IPSTRAIHLIMLTSAAQKGDARRAKEH-GFSGYLTKPVKRDELLQCISIVLGLKTEASLG 1193
Query: 872 NWELPSMSLRH--LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 929
+ + +++ + + L+V+DN +N K+ L++ G G +A + L
Sbjct: 1194 DSIVTRYTIKENPIPARPRFLLVEDNEMNQKIIVKMLEKRGMYCDLACSGAEALKALQ-Q 1252
Query: 930 HQFDACFMDIQMPEMDGYE 948
+D FMD QMPEMDGYE
Sbjct: 1253 KDYDIVFMDCQMPEMDGYE 1271
Score = 43.5 bits (101), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP---HQFDACFMDIQ 940
L G ++LIVDDN+ N K+ L+ V + +KA +L+ FD +D Q
Sbjct: 1060 LKGARVLIVDDNSSNRKIIRTYLEDAQCLVEESDSAEKAITILLSASAVKSFDVVIVDFQ 1119
Query: 941 MPEMDGYEMLPCFES 955
MP M+G+E+ ++
Sbjct: 1120 MPAMNGHELAAALKA 1134
>gi|170725193|ref|YP_001759219.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
gi|169810540|gb|ACA85124.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
Length = 1240
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 179/576 (31%), Positives = 272/576 (47%), Gaps = 96/576 (16%)
Query: 393 IGIL--VIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRT 450
+GIL V S+ G IF+ + KV E ++E K+AE A AKS FLA +SHE+RT
Sbjct: 439 MGILANVFKSMAGRIFEYSTTLEQKVSERTSELVESHKRAEIASKAKSNFLAHMSHEVRT 498
Query: 451 PMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 510
PMN ++G+ +++ T LD Q+D++ +S L++ IN+VLD +K+E+ KL L+ F
Sbjct: 499 PMNAIIGLSQLMLKTSLDKRQRDFMEKVLSSSDVLLNTINDVLDYSKIEANKLTLDEFQF 558
Query: 511 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK 570
+LR +L V ++ + K+Q KGVEL + + ++VP IGDP R QI+ NL N++KFTEK
Sbjct: 559 DLRDVLRRVTNISAYKAQSKGVELLLDVDEKVPFHWIGDPTRLGQILINLASNAVKFTEK 618
Query: 571 GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 630
G + + V L+E Q G S +
Sbjct: 619 GEVVIRVKLLE--------------------------------------QQGQLSTLR-- 638
Query: 631 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKG 690
S+ DTG GI +++F+PF Q+ SI+R +GGTG+GL+I + L M G
Sbjct: 639 --------FSIIDTGIGIDHHRLNQLFSPFTQIDSSITRKYGGTGLGLAICRQLTELMNG 690
Query: 691 EIGFVSIPNIGSTFTFTAVF--GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRP 748
I S N GS F FT NGS N+Q ++ +GM+ALVVD
Sbjct: 691 RIWVDSEINKGSQFHFTCKIKPNNGS-----------NSQRWPSYNKLKGMQALVVDDNA 739
Query: 749 IRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLF--- 805
+ +V + LGI+V V+D L ++ S + D+ +F
Sbjct: 740 MAREVLADILSSLGIEVTTVADGYAALDELESATS-------------SDSPYDVVFLDW 786
Query: 806 -------VNNLRKLGCGFQSK---LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLA 855
V +K+ K L+ + R T +I +I KP+ +S +
Sbjct: 787 NIPAINGVETAKKIENNINIKPPVAMLMVTAYDVDRVETDAHQANIKKIISKPVDASGIH 846
Query: 856 ASL-----QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYG 910
SL Q + N L S+ L +L +IL+VDD+ +N +VA L G
Sbjct: 847 DSLAEIFFQEKIPRPTSTNRELNLLGSLDLS-VLRDSRILVVDDSALNREVAREFLVDVG 905
Query: 911 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
V G++A ++ + +D MD+QMP MDG
Sbjct: 906 IKVSTASNGEQAIRMIKQAN-YDLVLMDVQMPVMDG 940
>gi|83312537|ref|YP_422801.1| sensor protein gacS [Magnetospirillum magneticum AMB-1]
gi|82947378|dbj|BAE52242.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1]
Length = 1117
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 164/550 (29%), Positives = 267/550 (48%), Gaps = 81/550 (14%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ E K+ AEA + KS+FLAT+SHEIRTPMNGV+GM +L+DT L Q+ + T + SG
Sbjct: 466 LREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHFAETIRDSG 525
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
++L+++IN++LD +K+E+GKL+L+ F L +++ V+ + + ++ KG+E+A I R+
Sbjct: 526 ESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRL 585
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
+ DPGR RQ++ NL GN++KFTEKG + + V L+
Sbjct: 586 RMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVSLL---------------------- 623
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
DG +P + V DTG GIP EAQ R+F+ F Q
Sbjct: 624 ------------------DGPDAPAMAR--------FDVRDTGIGIPPEAQGRLFSMFSQ 657
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +R +GGTG+GL+IS+ L M GE+G S GS F T
Sbjct: 658 VDASTARRYGGTGLGLAISRRLAELMGGEVGVESAVGRGSRFWITLPL------------ 705
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
++ ++ + G + LVVD P+ V ++ G++V D + ++ +
Sbjct: 706 -ELLAPQSAAPPDLSGHRVLVVDDNPVNCDVIERQLRAFGVEVHACLDAGSGMGELTRAA 764
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKL--GCGFQSKLFLLANSISSSRANTSTDGVS 840
+ EV D+ + + + + ++ + ++ S A+ + +
Sbjct: 765 AMGT----PWEVAVVDSQMPVVTGSEMVRMIHAIPMLAGTRIVVTSSQGMPADQNDGQPA 820
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKG-----NIRNWELPSMSLRHLLLGRKILIVDDN 895
I + + KPLR S L ++ R +G+ + ++ + + L +IL+ +DN
Sbjct: 821 IDAFLHKPLRQSTLLDTIGRVLGLTGPAERPADHAEEYKASEPAAKRL----RILVAEDN 876
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATEL--LMPPHQFDACFMDIQMPEMDGYEMLPCF 953
VN +VA L++ G V V G +A E L+P +D MD+QMPEMDG E
Sbjct: 877 PVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLP---YDVVLMDVQMPEMDGLEATRAI 933
Query: 954 ESFLLIAILV 963
+ L A V
Sbjct: 934 RALPLAAAQV 943
>gi|449143910|ref|ZP_21774729.1| hypothetical protein D908_03252 [Vibrio mimicus CAIM 602]
gi|449080441|gb|EMB51356.1| hypothetical protein D908_03252 [Vibrio mimicus CAIM 602]
Length = 1325
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 169/530 (31%), Positives = 262/530 (49%), Gaps = 78/530 (14%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ E K A+A AK FLA +SHEIRTPMN +LGM + ++T+LD TQ+ YV S
Sbjct: 593 LREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINESA 652
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
K L+ +IN++LD +K+E+GKL +E + F+L +LD+V ++ S K+Q+KG+E + I +
Sbjct: 653 KNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDPHI 712
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P LIGDP R Q++ NL GN++KFT++G I ++ +
Sbjct: 713 PLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARV----------------------- 749
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
+ N+ + L+ +V+DTG GI E +F F Q
Sbjct: 750 -------------RQLNEQQ------------VMLLFAVKDTGIGIAQEKLDDLFNAFSQ 784
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 785 ADNSITRQYGGTGLGLSISKQLVELMGGQISVHSEEGKGSTFEFSVVCGLQEAKMRD--- 841
Query: 723 QQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA 779
++ G+ + LVVD + + + V VS+ + LS++
Sbjct: 842 ---------IAQPLYGLANKRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSELQ 892
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTST 836
K +M+ V+ W + ++ LG +K FL+ I+ N+
Sbjct: 893 --HKPFDMLFVD---WNMPGMNGIELLTRVKSLGLRDHTKCFLVTAYGRDINLDSENSKL 947
Query: 837 DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 896
I ++I+KP+ S L ++ + G+ + + +N ELP S R G+K+L+V+DN
Sbjct: 948 ----IDALIVKPVNPSNLLDAIVTSYGIDHVRHKQN-ELPQHS-RPNFAGQKLLLVEDNE 1001
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G +V G++A E L FD MD+QMP MDG
Sbjct: 1002 VNQEVALGLLEETGLSVTIANNGQEALEKL-ENADFDLVLMDMQMPVMDG 1050
>gi|372487459|ref|YP_005027024.1| PAS domain S-box [Dechlorosoma suillum PS]
gi|359354012|gb|AEV25183.1| PAS domain S-box [Dechlorosoma suillum PS]
Length = 1306
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 168/545 (30%), Positives = 268/545 (49%), Gaps = 72/545 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+ AE A AKS FLA +SHEIRTPMN ++GM + M TEL Q+DYV + +L+
Sbjct: 569 RATAEEATEAKSLFLANMSHEIRTPMNAIIGMAHLAMKTELTPKQRDYVGKIHNAAISLL 628
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN++LD +K+E+GKL LE V F+L +LD+V L K+ +KG+EL ++ P L
Sbjct: 629 GIINDILDFSKIEAGKLSLEYVPFSLEDVLDNVSGLLGLKANEKGLELLFNVNAGTPAGL 688
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R QI+TNL+ N+IKFTE+G I +T V++ D ++++
Sbjct: 689 VGDPLRLNQILTNLVSNAIKFTERGQITLTTRPVDQAGDRVKLQF--------------- 733
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
W +ED G G+ E +F F Q S
Sbjct: 734 -----W----------------------------IEDMGIGMSREQLLHLFQAFTQADGS 760
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GLSIS+ LV M G I S GSTF FTA FG +
Sbjct: 761 TTRKYGGTGLGLSISRRLVEMMGGTIWADSTLGEGSTFCFTAWFGRAEELA--------- 811
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA---SGSK 783
+P ++ + G++ LV D ++ ++ L ++ ++V+ + L+Q+ G+
Sbjct: 812 -RPRTLPASLAGLRVLVADDNGAAREILGEALRHLDLRPDLVASGAEALAQLTEMQGGAD 870
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
++ ++ ++ + D VSTL + L++ Q ++ + T+ + I
Sbjct: 871 PYRVLFLDWQMPDLD-GVSTL--HKLQQALPQAQWPRVVMVTAYDQEELRRQTENLGICG 927
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
+++KP+ +S L L + + + N L + + + G +IL+ +DN +N ++A
Sbjct: 928 ILVKPVSASTLFDVL---VSLVDADNAPATPLHIAAPQTRIDGMRILLAEDNEINQQIAV 984
Query: 904 AGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGY---EMLPCFESFLL 958
L+ GA V G +A ELL P FD MD+QMP +DGY E L C + F
Sbjct: 985 ELLQSMGAQVTVAGDGLQAVELLERSPDDSFDLVLMDLQMPHLDGYDATERLRCQQRFAH 1044
Query: 959 IAILV 963
+ IL
Sbjct: 1045 LPILA 1049
>gi|27364942|ref|NP_760470.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus CMCP6]
gi|27361088|gb|AAO09997.1| BarA sensory histidine kinase (= VarS = GacS) [Vibrio vulnificus
CMCP6]
Length = 928
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 203/666 (30%), Positives = 317/666 (47%), Gaps = 101/666 (15%)
Query: 295 ATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSD 354
A P E A GY+ D+ SL +L Q +F + S++ S +
Sbjct: 146 AEPGEATRAI-GYIAVELDLSSL------RLQQYQEVFSAFLVLILGLGLASVFASRLMQ 198
Query: 355 DGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQ 407
D ++ + N D R+ ++ R + K L ++ I + I+ H I Q
Sbjct: 199 DVTQPITHMKNVVDRIRRGQLDVRIEGKMHGELDSLKNGINAMAISLSEYHVEMQHSIDQ 258
Query: 408 ATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 464
AT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++
Sbjct: 259 ATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLK 318
Query: 465 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 524
T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F+ R L++V+SL +
Sbjct: 319 TQLTNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQA 378
Query: 525 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 584
+ +KG+E+ + I R+PE ++GDP R +Q++TNL+GNSIKFTE+G+I V+V + +
Sbjct: 379 TSAHEKGLEITLKIDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRAQSG 438
Query: 585 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644
DSI+++ + V D T
Sbjct: 439 DSIDLQ------------FMVKD------------------------------------T 450
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI S + GSTF
Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF-QGMKALVVDPRPIRAKVSRYHIQRLGI 763
FT H++Q +S+ +E+ QG + L+V+P A V++ + + GI
Sbjct: 511 WFTLRL---------HSTQM--PMSDSIEAEYLQGKELLLVEPNMQAAAVTQQVLTQEGI 559
Query: 764 QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 823
V S L A G + + L +V+E +T + N + L
Sbjct: 560 NVTYRS----LLPDNAKGYDFVLLSLAVNQVYELET------IENWLSRALHISANTILA 609
Query: 824 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSL 880
S + A+ T+ I + KPL L SL Q + E S+S
Sbjct: 610 IPSTELALADQLTERFGI-QCLTKPLGRRKLLQSLAAKQTLQPLLPAPENAQAERSSLS- 667
Query: 881 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 940
+L VDDN NLK+ A L +V G+ A + + QFD FMDIQ
Sbjct: 668 --------VLAVDDNPANLKLITALLAERVVSVTSCSSGQDAVD-IATSRQFDLIFMDIQ 718
Query: 941 MPEMDG 946
MP+MDG
Sbjct: 719 MPKMDG 724
>gi|375146975|ref|YP_005009416.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
gi|361061021|gb|AEW00013.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
Length = 1019
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 162/549 (29%), Positives = 277/549 (50%), Gaps = 81/549 (14%)
Query: 408 ATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL 467
A + RI ++ +M K+ AEAA AKS F+A +SHE+RTPMNG++G D+++ T+L
Sbjct: 481 AAIERIQMAQQ----LMAAKENAEAASKAKSDFMANMSHELRTPMNGIIGFTDLVLTTDL 536
Query: 468 DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKS 527
TQ+DY++ S L+++IN++LD +K+E+GKL ++ V F+L ++++ + + S K+
Sbjct: 537 QKTQRDYLKNVSKSAYNLLNIINDILDFSKIEAGKLLIDEVPFDLSELIEETVEILSIKA 596
Query: 528 QDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 587
++KG+E+ I +P LIGDP R +Q++TNLMGN++KFT +G IFV V
Sbjct: 597 EEKGLEVVCSIDPELPSQLIGDPLRIKQVLTNLMGNAVKFTAEGEIFVKVQ--------- 647
Query: 588 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 647
+ H+ G + D ++V+DTG G
Sbjct: 648 ------------------PNGVHNCNGNLYMDID-----------------ITVKDTGIG 672
Query: 648 IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 707
IP + IF F Q S +R GGTG+GL+ISK LV M G + SIP GS+FTF+
Sbjct: 673 IPDDKLHAIFESFTQADNSTTRKFGGTGLGLTISKSLVELMGGRLAVGSIPGNGSSFTFS 732
Query: 708 AVFG--NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 765
NG+ P + S+ + LVVD + R L I
Sbjct: 733 LALKVVNGAP-------------PVTFYSKPLLREVLVVDDNETNCNLMRGIFDYLHIPC 779
Query: 766 EVV---SDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 822
+V ++ L ++Q ++ ++I+ + ++ D V ++KL G L
Sbjct: 780 KVCYSGAEALSVITQSIRDNEPFDLIITDHQMPVMD---GITLVKEIKKLLKGQTEPFIL 836
Query: 823 LANSISSSRANTSTDGVSIPSVIMKPLR----SSMLAASLQRAMGVGNKGNIRNWELPSM 878
+ +S+ + + + I + KP++ +++L+A +A G K +I E
Sbjct: 837 MLSSLEKTLYQSEAEKTGINKFLSKPVKLHELNNILSAIFNKAFDKGPKESIPVIE---- 892
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938
++ ++ ++L+V+D +N+ + + L++ G V+ GK+A +++ H D FMD
Sbjct: 893 TMENI---TRVLVVEDEPMNMLLISEVLRKMGVEVLKAGNGKEAL-VMVAVHAPDLVFMD 948
Query: 939 IQMPEMDGY 947
+ MP MDG+
Sbjct: 949 VNMPVMDGF 957
>gi|392411875|ref|YP_006448482.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390625011|gb|AFM26218.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1269
Score = 236 bits (602), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 170/550 (30%), Positives = 273/550 (49%), Gaps = 74/550 (13%)
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
+L+ +AE A +AKS+FLA +SHEIRTPMN ++G + + T+L Q+DY+ +S K
Sbjct: 510 QLRTQAEFATLAKSEFLAKMSHEIRTPMNAIIGFAGLALKTDLTSKQRDYLSKIDSSAKT 569
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L+ +IN++LD +K+E+GKL+LE++ F L +++ + ++ S K+ +K +EL I VP
Sbjct: 570 LLGIINDILDFSKIEAGKLDLESIDFQLDEVINGIANMVSVKASEKDLELISQIGSNVPA 629
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 604
LIGDP R Q++ NL+ N++KFTE GHI + V V
Sbjct: 630 ALIGDPLRLGQVLVNLVNNAVKFTEHGHILIKVENV------------------------ 665
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
K+S D + L SV DTG G+ + +R+F F Q
Sbjct: 666 -----------------------KNSYTDCV-LKFSVTDTGIGMTPDQMTRLFAAFSQAD 701
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
S++R GGTG+GL+ISK+LV M G+I S GSTF+F+ FG S E Q
Sbjct: 702 TSVTRKFGGTGLGLTISKHLVEMMGGQISVESELGRGSTFSFSIEFGRA---SREKRRQL 758
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS-- 782
+ P SV +G+K LVVD P +V + L +V +S++ S
Sbjct: 759 V--PPQSV----EGLKVLVVDDNPTAREVLVEQLDSLKFRVMSAPSARAAISELKRSSAQ 812
Query: 783 -KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
++++++ ++ E D ++ + N L + ++ + T + V I
Sbjct: 813 DAPYDLVVMDWKMPEMDGIEASRVIRNDADLQ---HAPSIIMVTAFGREDVMTRAEEVGI 869
Query: 842 PSVIMKPLRSSMLAASLQRAMG-VGNKGNI-RNWELPSM--SLRHLLLGRKILIVDDNNV 897
+MKP+ S++ ++ + G + G I R P++ L+ G K+L+V+DN +
Sbjct: 870 NGFLMKPVTPSLMFDTIMQVFGHEPSTGTIQRRAAAPAVEPDFADLIEGAKVLLVEDNAL 929
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEML------P 951
N +VA L G V GK+A E + ++D MD+QMP M GYE P
Sbjct: 930 NQQVANEILAGAGLFVEIANNGKEAVEAV-ETSEYDLVLMDVQMPVMGGYEATAVIRKNP 988
Query: 952 CFESFLLIAI 961
F+ ++A+
Sbjct: 989 RFKDLPIVAM 998
>gi|332709992|ref|ZP_08429948.1| PAS domain S-box protein [Moorea producens 3L]
gi|332351363|gb|EGJ30947.1| PAS domain S-box protein [Moorea producens 3L]
Length = 1738
Score = 236 bits (601), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 188/631 (29%), Positives = 298/631 (47%), Gaps = 103/631 (16%)
Query: 386 LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 445
L A++ +GI + + H+ + + ++ E + + ++ AEAA AKS+FLAT+S
Sbjct: 944 LEAVADQVGIAIAQA---HLLEQETRQREQLTEQNFALEQARRTAEAATQAKSEFLATMS 1000
Query: 446 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505
HEIRTPMN V+GM +L+DT+L Q+D+V T + SG +L+++IN++LD +K+ESGKLEL
Sbjct: 1001 HEIRTPMNAVIGMTGLLLDTDLTSQQRDFVETIRNSGDSLLTIINDILDFSKIESGKLEL 1060
Query: 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 565
E FNL +++ L L + K+ +K +ELA P ++GD R RQI+ NL+GN+I
Sbjct: 1061 EEQPFNLITCIEESLDLLAAKAAEKKLELAYLFHPNTPPMIVGDVTRLRQILVNLLGNAI 1120
Query: 566 KFTEKGHIFVTVYLVE----EVVDSIEVETELSSSKNTLSGYPVADRC----HSWKGFKT 617
KFT G + V+V E E+VD ETE S++ N YP+A H F T
Sbjct: 1121 KFTHIGEVLVSVTARELSIGELVDG--KETEHSNTAN--YSYPLASAPDYGKHYSLSFPT 1176
Query: 618 ------------FNQDG----------------------------------STSPFKSSS 631
F+Q G T+ F+S+S
Sbjct: 1177 LANGKDYTLQGGFDQTGYINGVRGAKGTQNNTRDNTRVFSPPHPQISSRNPHTARFRSAS 1236
Query: 632 --ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMK 689
+ + + V+DTG GIP + R+F F QV S SR +GGTG+GL+I + L M
Sbjct: 1237 TQSSIYEIQFVVKDTGIGIPEDRIDRLFQSFSQVDSSTSRQYGGTGLGLAICQRLTTMMG 1296
Query: 690 GEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE--------FQGMKA 741
G+I S GS F FT + QP+ + +G +
Sbjct: 1297 GKIWVESQVGQGSKFYFTV----------------LAKQPDPIEEPKLPVSQPLLEGKRL 1340
Query: 742 LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSV 801
L+VD + + G+ + + + L ++ G K ++ +++ + E D
Sbjct: 1341 LIVDDSATNRTIISEQAKSWGMLTQTAASGREALDWLSQGDK-FDIAILDGYMPEMD--- 1396
Query: 802 STLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 861
+R+ G Q+ ++ +S++ S + I +V+ KP++ S L L +
Sbjct: 1397 GFTLATKIRQQSEG-QALPLVMLSSMNQSDTKHHQSQLDIAAVLNKPIKQSQLHDVLTQV 1455
Query: 862 MGVGNKGNIRNWELPSMSL------RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVC 915
M G I+ + L +H L +IL+ +DN VN ++A LKR G
Sbjct: 1456 MS-GQPIKIKRTPAQHLKLDTEMAQKHPL---RILLAEDNIVNQQLALQLLKRMGYRADV 1511
Query: 916 VERGKKATELLMPPHQFDACFMDIQMPEMDG 946
G + + L +D MD+QMPEMDG
Sbjct: 1512 AGNGLEVLQAL-SRQPYDLVLMDVQMPEMDG 1541
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
LL G+++LIVDD+ N + + K +G G++A + L +FD +D MP
Sbjct: 1334 LLEGKRLLIVDDSATNRTIISEQAKSWGMLTQTAASGREALDWLSQGDKFDIAILDGYMP 1393
Query: 943 EMDGYEM 949
EMDG+ +
Sbjct: 1394 EMDGFTL 1400
>gi|410724306|ref|ZP_11363504.1| PAS domain S-box [Clostridium sp. Maddingley MBC34-26]
gi|410602311|gb|EKQ56792.1| PAS domain S-box [Clostridium sp. Maddingley MBC34-26]
Length = 949
Score = 236 bits (601), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 165/542 (30%), Positives = 259/542 (47%), Gaps = 67/542 (12%)
Query: 409 TVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD 468
T R+A+ E + + K +AEAA++AKSQFLA +SHEIRTP+NG+ G L++L + L
Sbjct: 304 TDQRLAEKE-----LYKAKVEAEAANIAKSQFLANMSHEIRTPINGIFGFLELLETSNLS 358
Query: 469 VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQ 528
+ Q++++R A+++ + L+ +IN++LD +K+E+ KL +E++ FNLR ++D +SL K+
Sbjct: 359 LEQKEFIREAKSASEMLLYIINDILDFSKIEAKKLTMESIEFNLRTAIEDAVSLLVPKAT 418
Query: 529 DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 588
+KG+EL I VPE +IGDP RF+Q++ NL+ N++KFTE G I V +D +
Sbjct: 419 NKGIELYSMIKANVPEVVIGDPSRFKQVLNNLISNAVKFTESGEISVA-------IDCLV 471
Query: 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 648
E E++ L V+DTG GI
Sbjct: 472 EENEIAL-----------------------------------------LSFEVKDTGIGI 490
Query: 649 PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708
E IF F Q S +R +GGTG+GL+IS LV M GEI S GSTF F
Sbjct: 491 KAENIPNIFQSFSQADTSTTRKYGGTGLGLAISSELVKMMGGEICVESKFGEGSTFKFNV 550
Query: 709 VFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ +P + + LV+D ++ + ++Q G++V
Sbjct: 551 KLKIAKRVA----------EPIYMFEKLDHANILVIDDNANNREIVKLYLQENGLKVYEA 600
Query: 769 SDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS 828
D ++ I S + N I + +E N L+ + KL LL S +
Sbjct: 601 GDAGSGITTIISNANTNNKINIAIIDYEMPGMSGYELANALKNIPIAKDVKLILLT-SYA 659
Query: 829 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLG 886
S S + KP+R L + A+G+ + + ++ + L
Sbjct: 660 KRECGKSAKEFGFSSYLTKPIRRDDLIRCVAVALGLKQEEEEEHEIEMESGIKEIQTQLK 719
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+IL+V+DN VN K+ + LK + G +A + + +D FMD QMP MDG
Sbjct: 720 PRILLVEDNEVNRKIFISMLKSHNMDCDVALDGSEALKAV-SEKDYDIVFMDCQMPVMDG 778
Query: 947 YE 948
YE
Sbjct: 779 YE 780
>gi|86607438|ref|YP_476201.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-3-3Ab]
gi|86555980|gb|ABD00938.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-3-3Ab]
Length = 1523
Score = 236 bits (601), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 163/522 (31%), Positives = 257/522 (49%), Gaps = 72/522 (13%)
Query: 438 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497
S FLAT+SHEIRTPMN VLGM +L++T L+ Q+D+V T + SG AL++LIN++LD +K
Sbjct: 850 SSFLATMSHEIRTPMNAVLGMTGLLLETPLNAEQRDFVETIRVSGDALLTLINDILDFSK 909
Query: 498 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 557
+E G++ELE + F+LR+ L++V LF+ + KG+ELAV + VP L GD R RQI+
Sbjct: 910 LEVGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLVPPEVPRYLRGDASRLRQIL 969
Query: 558 TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 617
NL+ N+IKFT +G + + L++E +++ S ++T G P
Sbjct: 970 NNLVSNAIKFTHQGEVVIQAELMQETATHVQLRL---SVRDTGIGIP------------- 1013
Query: 618 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 677
+D T ++F PF QV S +R +GGTG+G
Sbjct: 1014 --KDAQT------------------------------KLFQPFTQVDASTTRKYGGTGLG 1041
Query: 678 LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 737
L+I K L M G I S GSTF+ + ++Q++ QP + + Q
Sbjct: 1042 LAICKQLTELMGGRIFLESEEGRGSTFSLELTL------ERQPYARQISQQPARIPVDLQ 1095
Query: 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK---IINMILVEQEV 794
G + LVVD K+ RY G+ VE + Q L ++ ++ + +++ ++
Sbjct: 1096 GKRLLVVDDNATNRKIVRYQATAWGMVVEEAENAYQALDKLRQAAREGIPFPLAVLDMQM 1155
Query: 795 WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML 854
E D ++ +L Q++L ++ S+ + + + + KP++ + L
Sbjct: 1156 PEVDGETLGRWIKADPELS---QTQLVMM-TSLGLGEHSRRAAEIGFAAYLTKPVKQTRL 1211
Query: 855 AASLQRAMGVGNK--------GNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 906
+L A+G + G + PS S L +IL+ +DN VN KVA L
Sbjct: 1212 QEALVMALGKSSGLATSLLGMGPPLSQSAPSASRPQQPL--RILLAEDNPVNQKVALRQL 1269
Query: 907 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+ G V G++ +LL Q+D MD QMP MDGYE
Sbjct: 1270 QSLGYMADVVANGQEVLDLLQ-RVQYDLILMDCQMPVMDGYE 1310
>gi|193214323|ref|YP_001995522.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
35110]
gi|193087800|gb|ACF13075.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
35110]
Length = 1629
Score = 236 bits (601), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 177/538 (32%), Positives = 265/538 (49%), Gaps = 49/538 (9%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
KVE + ++E +++A A AK++FLA +SHEIRTPMN V+GM +L+DT L Q++Y
Sbjct: 909 KVERE---LIEAREEALRAAQAKAEFLANMSHEIRTPMNAVIGMTGLLLDTPLTAEQREY 965
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
V T ++SG AL+++IN++LD +K+ESGKLELE F LR +++ + +FS + +K +EL
Sbjct: 966 VETIRSSGDALLTVINDILDFSKIESGKLELEQYPFTLRNAIEECIDIFSATAAEKHLEL 1025
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-EVVDSIEVETEL 593
+I ++VP + GD R RQI+ NL+ N++KFT+ G + + V L + ++ E
Sbjct: 1026 VYFIHEKVPTKVSGDVTRLRQILVNLVSNAVKFTKSGEVVLEVQLQQPREQNADERLMVF 1085
Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
+ YP A + F+ T F +V DTG GIP +
Sbjct: 1086 HDHDDDKYNYPQA-------ALQQFDDKKCTLHF------------TVRDTGIGIPADRL 1126
Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
RIF F QV S +R +GGTG+GL+ISK+L M G++ S GSTF FT
Sbjct: 1127 ERIFHSFSQVDASTTRKYGGTGLGLTISKHLCELMNGKMWVESELGKGSTFHFTITLERL 1186
Query: 714 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
T E+ SS+ G AL+VD ++ G+ V
Sbjct: 1187 PDTKGEY------------SSKLAGKHALIVDDNATNRRILSLQSATWGMSSHTVGSGKN 1234
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
L I SG ++ +++ + E D + LRKL L +L S +
Sbjct: 1235 ALELIHSGMH-FDVGILDFHMPEMD---GLMLAMELRKLPQTQDLPLVMLT-SAGNRETV 1289
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR-HLLLGR----K 888
+ T GV + + KP++ S L L V KG + E P + + L R +
Sbjct: 1290 SETVGVGFSAFLNKPIKQSQLYDVL---TDVFQKGELPVREKPKPKTKVSIDLAREIPLR 1346
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
ILI +DN VN K+ L++ G G + E L +D MD+QMPEMDG
Sbjct: 1347 ILIAEDNVVNQKLVLRILEKVGYRADVAANGAEVIEAL-KSKTYDLILMDVQMPEMDG 1403
>gi|427738829|ref|YP_007058373.1| signal transduction histidine kinase [Rivularia sp. PCC 7116]
gi|427373870|gb|AFY57826.1| signal transduction histidine kinase [Rivularia sp. PCC 7116]
Length = 1288
Score = 236 bits (601), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 174/569 (30%), Positives = 284/569 (49%), Gaps = 63/569 (11%)
Query: 386 LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 445
L +++ +GI V + + Q + ++ + + K+ AE A+ AKS+FLA +S
Sbjct: 584 LESVAAQVGIAVAQA---RLLQQETQQKQELTIKNSQLEQAKQGAETANRAKSEFLAMMS 640
Query: 446 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505
HEIRTPMN V+GM +L+D +L Q D+V T ++SG AL+++IN++LD +K+ESG+L+L
Sbjct: 641 HEIRTPMNAVIGMSGLLLDMDLTPRQLDFVETIRSSGDALLTIINDILDFSKIESGRLDL 700
Query: 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 565
E + FNLR +++ L L + ++ DK + LA I + P +IGD R RQII NL+ N++
Sbjct: 701 EKLPFNLRNCIEESLDLLTSQAADKNLNLAYMIDSQTPTLIIGDVTRVRQIIVNLLSNAV 760
Query: 566 KFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 625
KFT+ G + V+V SG + + + ST+
Sbjct: 761 KFTQAGEVCVSV-----------------------SG-------------RQLSSELSTN 784
Query: 626 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 685
++ + SV DTG GIP E R+F PF QV S++R +GGTG+GL+ISK L
Sbjct: 785 DYQ--------IKFSVSDTGIGIPQEKIQRLFKPFSQVDASMTRQYGGTGLGLAISKRLS 836
Query: 686 GRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVD 745
M G + S +GSTF FT S ++ S N QP+ G + LVVD
Sbjct: 837 EIMDGTMWVESTVGVGSTFHFTIA---AQSVASAGISNLDNIQPH-----LSGKRLLVVD 888
Query: 746 PRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLF 805
+ +++ GI V S + L ++ + K +M +++ + + D
Sbjct: 889 SNATNRNILTLQMEKWGIVVFAASTTSEAL-ELVNSRKDFDMAIIDMQTPQVDGLNLAAE 947
Query: 806 VNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865
++ + GC + ++ +S+ +++ KP++ S L + R +
Sbjct: 948 IHGVP--GC--EQLPIVMLSSVDRVTQQQLVAKSKFVALLNKPIKQSQLYDTCVRILCGK 1003
Query: 866 NKGNIRNW-ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATE 924
N+ + ++ M L L R IL+V+D +N KVA L++ G + G +A
Sbjct: 1004 QISNLSSTSKVDDMQLSEQLPLR-ILLVEDMPLNQKVALHMLQKLGYSADVAANGLEALT 1062
Query: 925 LLMPPHQFDACFMDIQMPEMDGYEMLPCF 953
L ++D FMD+QMPEMDG + C
Sbjct: 1063 SLR-RQEYDIVFMDVQMPEMDGLQATRCI 1090
>gi|261210923|ref|ZP_05925213.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341]
gi|260839898|gb|EEX66498.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341]
Length = 1324
Score = 235 bits (600), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 167/539 (30%), Positives = 264/539 (48%), Gaps = 83/539 (15%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
++EE+ + + KK A+A AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ Y
Sbjct: 588 RMEEE---LRDAKKMADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKY 644
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
V S K L+ +IN++LD +K+E+GKL +E + FNL +LD+++S+ S K+Q+KG+E
Sbjct: 645 VTRINESAKNLLGIINDILDFSKMEAGKLHVERIDFNLDDVLDNLISVISLKAQEKGIEF 704
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I +P LIGDP R Q++ NL GN++KFT +G I ++ +
Sbjct: 705 LMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTHQGEIVISARV--------------- 749
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
+ N+ T L +V+DTG GI E +
Sbjct: 750 ---------------------RQLNEQQVT------------LFFAVKDTGIGITQEKLA 776
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
+F F Q SI+R +GGTG+GLSISK LV M GEI S GSTF F+ V G
Sbjct: 777 GLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGEISAHSEEGKGSTFEFSVVCGLQE 836
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 771
+ + ++ G+ + LVVD + + + V VS+
Sbjct: 837 ARMRD------------IAQPLHGLADKRVLVVDDNDSARNILDSLLTAMRFNVVTVSNG 884
Query: 772 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
+ LS+I K +M+ V+ W + ++ LG Q+K FL+
Sbjct: 885 FEALSEIQ--QKPFDMLFVD---WNMPGMNGIELLTRVKSLGLREQTKCFLVTAYGRDIH 939
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN----KGNIRNWELPSMSLRHLLLGR 887
++ + + S+I+KP+ S L ++ + G+ + + + P+ + G+
Sbjct: 940 LDSENSKL-VDSLIVKPVNPSNLLDAIVTSYGIDHVRHKQTEVHQHRKPNFA------GQ 992
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+L+V+DN VN +VA L+ G +V+ G++A + L FD MD+QMP MDG
Sbjct: 993 TLLLVEDNEVNQEVALGLLQETGLSVIVANNGQEALQRL-AEKSFDLVLMDMQMPVMDG 1050
>gi|427421152|ref|ZP_18911335.1| PAS domain S-box [Leptolyngbya sp. PCC 7375]
gi|425757029|gb|EKU97883.1| PAS domain S-box [Leptolyngbya sp. PCC 7375]
Length = 1053
Score = 235 bits (600), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 168/530 (31%), Positives = 265/530 (50%), Gaps = 69/530 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+ A AA KS+FLAT+SHEIRTPMN V+GM +L+DT L Q+++V T + SG AL+
Sbjct: 354 RDDALAATKTKSEFLATMSHEIRTPMNAVIGMTSLLLDTALTDEQRNFVTTVRNSGNALL 413
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+LIN++LD +K+ESG LELEA F+LRA +++ L + K+ +K +ELA I +P T
Sbjct: 414 TLINDILDFSKIESGHLELEAHPFDLRACIEEAFDLIAAKASEKQLELAFNIDSAIPNTF 473
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R RQ++ NL+GNS+KFT +G I ++V
Sbjct: 474 VGDVTRLRQVLVNLLGNSVKFTHRGEISISVT---------------------------- 505
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLI----NLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
+WK S+SP + S L +L +V+DTG GIP + +R+F F Q
Sbjct: 506 ----NWK---------SSSPAEPGSKSLAETHQSLCFAVKDTGIGIPTQRIARLFKAFSQ 552
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +R +GGTG+GL+I K L M G+I S + GSTF FT T+ E +S
Sbjct: 553 VDSSTTRKYGGTGLGLAICKQLTEMMGGKIWVESQVDQGSTFFFTITL----QTTVEKSS 608
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
++ S SS+ G + L+VD ++ Q G+ + L G
Sbjct: 609 RKR----ISPSSQLVGKRLLIVDNNATNRQILEKQTQSWGMLTRTTCSGAEALKCFERG- 663
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
++ ++ +++ ++ E D +++L +S ++ S+ + +
Sbjct: 664 EVFDLAILDMQMPEMDGMTLAQEIHDLPDQ----KSLPLMMLTSVGKYQISQVDIEKHFV 719
Query: 843 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS---MSLRHLLLGR---KILIVDDNN 896
+ + KP++ + L +L R G +E P ++ H L + +IL+ +DN
Sbjct: 720 AFLNKPIKQAQLLENLVRLCA----GKFVKFEQPKKLVTTIDHHLAKKHPLQILLAEDNG 775
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN ++A LK+ G V G +A L +D MD+QMP+MDG
Sbjct: 776 VNQQLATQLLKKMGYRADLVGNGLEAINAL-ERQSYDVILMDLQMPDMDG 824
>gi|304312962|ref|YP_003812560.1| sensory box histidine kinase/response regulator [gamma
proteobacterium HdN1]
gi|301798695|emb|CBL46927.1| sensory box histidine kinase/response regulator [gamma
proteobacterium HdN1]
Length = 833
Score = 235 bits (600), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 173/538 (32%), Positives = 270/538 (50%), Gaps = 56/538 (10%)
Query: 411 NRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT 470
NR +V E E K+ AEA+ K+QFLA +SHE+RTPM+GVLGML +L++T+L
Sbjct: 285 NRAIRVSE------ENKRVAEASAEDKAQFLANMSHELRTPMHGVLGMLSLLLETQLSSD 338
Query: 471 QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDK 530
QQ YV A SG L+ L+N VLD +K+E KL LE V F+LR +++V+ + + K
Sbjct: 339 QQHYVEVAHESGNILLELLNNVLDLSKIEHNKLALERVEFDLRQAIEEVVVILGESANSK 398
Query: 531 GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 590
+EL V+ + VP ++GDP R +QI+ NL+GN+IKFT +GH+ ++ ++
Sbjct: 399 LLELVVWQNASVPSRVVGDPIRLKQIVFNLLGNAIKFTTQGHVEISYAVI---------- 448
Query: 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 650
S+NT G V D + F+ QD S S D + + V DTG G+
Sbjct: 449 -----SENTRRG--VVDSAEA--DFQAQEQDVS-----ESVGDELWIRFDVSDTGVGLSE 494
Query: 651 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710
+ Q +IF F Q + +R +GG+G+GL++ K +V M G IG S GS F F F
Sbjct: 495 DVQEKIFEAFTQADSTTTRVYGGSGLGLALCKQIVKLMGGAIGVESELGKGSKFWFEIPF 554
Query: 711 GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 770
G T +N+ K +V+D + + A+ R+++ L + + ++
Sbjct: 555 GKTPQTLPALREIALNSN-----------KVMVLDGKKVSAEAMRHYLAELEVDCVLAAN 603
Query: 771 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
+ L+ + SG + +L+ + ++DT L +R+ + SI
Sbjct: 604 EFDVLTLLESGGALYFRLLISLDT-KQDTIYHLLKAPTVRR---ELDDANIVFYGSIQQR 659
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR-NWELPSMSLRHLLLGRKI 889
+ V+ KP+R S L+RA G GN+ LP + H +I
Sbjct: 660 NDFRLLKEYAGFDVLTKPIRLS----QLRRAFGF--IGNVHVAGALPVV---HGASSLRI 710
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
L+V+D+ +N +VA LK+ G E G+ A + +M +D MD+QMP MDGY
Sbjct: 711 LVVEDHPINRQVAVGLLKKLGFVPEVAENGEIALK-MMQNQAYDLILMDLQMPVMDGY 767
>gi|37681007|ref|NP_935616.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus YJ016]
gi|37199757|dbj|BAC95587.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
Length = 928
Score = 235 bits (600), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 202/666 (30%), Positives = 317/666 (47%), Gaps = 101/666 (15%)
Query: 295 ATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSD 354
A P E A GY+ D+ SL +L Q +F + S++ S +
Sbjct: 146 AEPGEATRAI-GYIAVELDLSSL------RLQQYQEVFSAFLVLILGLGLASVFASRLMQ 198
Query: 355 DGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQ 407
D ++ + N D R+ ++ R + K L ++ I + I+ H I Q
Sbjct: 199 DVTQPITHMKNVVDRIRRGQLDVRIEGKMHGELDSLKNGINAMAISLSEYHVEMQHSIDQ 258
Query: 408 ATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 464
AT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++
Sbjct: 259 ATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLK 318
Query: 465 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 524
T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F+ R L++V+SL +
Sbjct: 319 TQLTNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQA 378
Query: 525 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 584
+ +KG+E+ + I R+PE ++GDP R +Q++TNL+GNSIKFTE+G+I V+V + +
Sbjct: 379 TSAHEKGLEITLKIDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRAQSG 438
Query: 585 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644
DS++++ + V D T
Sbjct: 439 DSLDLQ------------FMVKD------------------------------------T 450
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI S + GSTF
Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF-QGMKALVVDPRPIRAKVSRYHIQRLGI 763
FT H++Q +S+ +E+ QG + L+V+P A V++ + + GI
Sbjct: 511 WFTLRL---------HSTQM--PMSDSIEAEYLQGKELLLVEPNMQAAAVTQQVLMQEGI 559
Query: 764 QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 823
V S L A G + + L +V+E +T + N + L
Sbjct: 560 NVTYRS----LLPDNAKGYDFVLLSLAVNQVYELET------IENWLSRALHISANTILA 609
Query: 824 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSL 880
S + A+ T+ I + KPL L SL Q + E S+S
Sbjct: 610 IPSTELALADQLTERFGI-QCLTKPLGRRKLLQSLAAKQTLQPLLPAPENAQAERSSLS- 667
Query: 881 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 940
+L VDDN NLK+ A L +V G+ A + + QFD FMDIQ
Sbjct: 668 --------VLAVDDNPANLKLITALLAERVVSVTSCSSGQDAVD-IATSRQFDLIFMDIQ 718
Query: 941 MPEMDG 946
MP+MDG
Sbjct: 719 MPKMDG 724
>gi|262171619|ref|ZP_06039297.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
gi|261892695|gb|EEY38681.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
Length = 1325
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 169/531 (31%), Positives = 264/531 (49%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL++ +AAD AK FLA +SHEIRTPMN +LGM + ++T+LD TQ+ YV S
Sbjct: 592 ELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + F+L +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT++G I ++ +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARV---------------------- 749
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+ N+ + L+ +V+DTG GI E + +F F
Sbjct: 750 --------------RQLNEQQ------------VMLLFAVKDTGIGIAQEKLNDLFNAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQISVHSEEGKGSTFEFSVVCGLQEAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
++ G+ + LVVD + + + V VS+ + LS++
Sbjct: 842 ----------IAQPLYGLANKRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSEL 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ + W + ++ LG +K FL+ I+ N+
Sbjct: 892 Q--HKPFDMLFAD---WNMPGMNGIELLTRVKSLGLRDHTKCFLVTAYGRDINLDSENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
I ++I+KP+ S L ++ + G+ + + +N ELP S R G+K+L+V+DN
Sbjct: 947 L----IDALIVKPVNPSNLLDAIVTSYGIDHVRHKQN-ELPQHS-RPNFTGQKLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G +V G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLEETGLSVTIANNGQEALEKL-ENADFDLVLMDMQMPVMDG 1050
>gi|320155329|ref|YP_004187708.1| BarA sensory histidine kinase ( VarS GacS) [Vibrio vulnificus
MO6-24/O]
gi|319930641|gb|ADV85505.1| BarA sensory histidine kinase (VarS GacS) [Vibrio vulnificus
MO6-24/O]
Length = 928
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 202/666 (30%), Positives = 317/666 (47%), Gaps = 101/666 (15%)
Query: 295 ATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSD 354
A P E A GY+ D+ SL +L Q +F + S++ S +
Sbjct: 146 AEPGEATRAI-GYIAVELDLSSL------RLQQYQEVFSAFLVLILGLGLASVFASRLMQ 198
Query: 355 DGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQ 407
D ++ + N D R+ ++ R + K L ++ I + I+ H I Q
Sbjct: 199 DVTQPITHMKNVVDRIRRGQLDVRIEGKMHGELDSLKNGINAMAISLSEYHVEMQHSIDQ 258
Query: 408 ATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 464
AT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++
Sbjct: 259 ATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLK 318
Query: 465 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 524
T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F+ R L++V+SL +
Sbjct: 319 TQLTNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQA 378
Query: 525 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 584
+ +KG+E+ + I R+PE ++GDP R +Q++TNL+GNSIKFTE+G+I V+V + +
Sbjct: 379 TSAHEKGLEITLKIDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRAQSG 438
Query: 585 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644
DS++++ + V D T
Sbjct: 439 DSLDLQ------------FMVKD------------------------------------T 450
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI S + GSTF
Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF-QGMKALVVDPRPIRAKVSRYHIQRLGI 763
FT H++Q +S+ +E+ QG + L+V+P A V++ + + GI
Sbjct: 511 WFTLRL---------HSTQM--PMSDSIEAEYLQGKELLLVEPNMQAAAVTQQVLTQEGI 559
Query: 764 QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 823
V S L A G + + L +V+E +T + N + L
Sbjct: 560 NVTYRS----LLPDNAKGYDFVLLSLAVNQVYELET------IENWLSRALHISANTILA 609
Query: 824 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSL 880
S + A+ T+ I + KPL L SL Q + E S+S
Sbjct: 610 IPSTELALADQLTERFGI-QCLTKPLGRRKLLQSLAAKQTLQPLLPAPENAQAERSSLS- 667
Query: 881 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 940
+L VDDN NLK+ A L +V G+ A + + QFD FMDIQ
Sbjct: 668 --------VLAVDDNPANLKLITALLAERVVSVTSCSSGQDAVD-IATSRQFDLIFMDIQ 718
Query: 941 MPEMDG 946
MP+MDG
Sbjct: 719 MPKMDG 724
>gi|434387854|ref|YP_007098465.1| signal transduction histidine kinase [Chamaesiphon minutus PCC
6605]
gi|428018844|gb|AFY94938.1| signal transduction histidine kinase [Chamaesiphon minutus PCC
6605]
Length = 696
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 166/525 (31%), Positives = 256/525 (48%), Gaps = 56/525 (10%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK AE+A+ AKS FLA +SHEIRTPMNGV+GM +L+DTEL Q ++V T + SG AL+
Sbjct: 162 KKVAESANKAKSAFLAAMSHEIRTPMNGVIGMTGLLLDTELTSQQHEFVSTIRHSGDALL 221
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+LIN++LD +K+ESGKLEL+ FN+R +++ L L + K+ +K +ELA I P L
Sbjct: 222 TLINDILDFSKIESGKLELDYQPFNIRDCIEETLDLLAPKAAEKNLELAYLIYKNTPNYL 281
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVY---LVEEVVDSIEVETELSSSKNTLSGY 603
GD R RQI+ NL+GN +KFT G + V V + E D++
Sbjct: 282 YGDVTRIRQILVNLVGNGLKFTNSGEVIVGVTARKIAAEDADAV---------------- 325
Query: 604 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663
++ D + V+DTG GIP + R+F F QV
Sbjct: 326 -------------------------VTADDTYEVRFVVKDTGIGIPQDKIDRLFKAFSQV 360
Query: 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ 723
S +R +GGTG+GL ISK L M G + S + GS F FT + +T++ +
Sbjct: 361 DSSTTRNYGGTGLGLIISKRLTELMHGRMWVESNSDGGSNFFFTIIAKASPATTSSTWKE 420
Query: 724 QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 783
Q +QP ++ QG + L+V+ K+ Q G+ + L ++ +
Sbjct: 421 Q--SQP----AQLQGKRLLIVEDNATHRKILALQAQSWGMHAHATESGAEAL-KLLNLRG 473
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
++ +++ ++ E D +R+ +Q ++ +S++ +R+ VS +
Sbjct: 474 HFDLAILDMQMPEMD---GLTLAQKIREFP-EYQQLPLVMLSSLNINRSEIEAANVSFAA 529
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
+ KP+ L L +G +I + + +IL+ +DN VN KVA
Sbjct: 530 TLNKPIGHFQLQDVLAHILGESENKSIVKPKASNYDRYQATFPLRILLAEDNLVNQKVAM 589
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
LKR G G + ELL +D MD+QMP+MDG E
Sbjct: 590 HMLKRIGYQADIAMNGVEVLELLR-DRAYDVVLMDLQMPKMDGME 633
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
L G+++LIV+DN + K+ A + +G E G +A +LL FD +D+QMPE
Sbjct: 427 LQGKRLLIVEDNATHRKILALQAQSWGMHAHATESGAEALKLLNLRGHFDLAILDMQMPE 486
Query: 944 MDGYEMLPCFESF 956
MDG + F
Sbjct: 487 MDGLTLAQKIREF 499
>gi|392378909|ref|YP_004986068.1| two-component hybrid sensor and regulator [Azospirillum brasilense
Sp245]
gi|356881276|emb|CCD02261.1| two-component hybrid sensor and regulator [Azospirillum brasilense
Sp245]
Length = 1264
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 171/548 (31%), Positives = 271/548 (49%), Gaps = 73/548 (13%)
Query: 411 NRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT 470
R +EE + + +AEAA AKS FLA +SHEIRTPMNGV+GM D+L++T L
Sbjct: 579 ERTEALEEVTDALRLARDEAEAATHAKSDFLAAMSHEIRTPMNGVIGMTDLLLETGLIGE 638
Query: 471 QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDK 530
Q + + ++S AL+++IN++LD +K+E+G++ELE + FN +L+ V+ L K+ +K
Sbjct: 639 QLQFAQAVRSSANALLTIINDILDMSKLEAGRVELETLPFNPADLLEGVVELLWPKAHEK 698
Query: 531 GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 590
G++L + +S T++GD R RQI+ NL+GN++K+TE G++ + I+ +
Sbjct: 699 GIDLGILLSPEARHTVLGDATRLRQILVNLVGNAVKYTETGNVVIET--------GIQTQ 750
Query: 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 650
T DG++ + D+I DTG GIP
Sbjct: 751 T-----------------------------DGNSETIHTLRFDVI-------DTGIGIPS 774
Query: 651 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV- 709
EA SR+F+ F QV +I+R +GGTG+GL+I K L M+G I S GS FT
Sbjct: 775 EAISRLFSRFEQVDRTIARRYGGTGLGLAICKQLTELMQGRITVKSDQATGSQFTVEVPI 834
Query: 710 -FGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
NGSS +E S F G ALV+ P ++ ++ L + V+
Sbjct: 835 RIANGSSQQSEWMS-------------FTGRHALVIKPPGFNRRILTAQLRSLTLDVQEA 881
Query: 769 SD---QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 825
SD L++ + +++ V Q ++ DT TL L + + ++ L+
Sbjct: 882 SDAQTARAALAKAVTSGHPFDVVFVSQSLF--DTVSDTLLQFGLDR--SDYAPRIILVC- 936
Query: 826 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI----RNWELPSMSL- 880
S + A+T D + + + +P+R + L++ L R G + R+ P +
Sbjct: 937 SYGAPLASTGNDKLVPFACLARPIRMAALSSILGRLFSDGLDAPLATPARSHHPPEREIN 996
Query: 881 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 940
R ILI +DN N +AA L+R G V V+ G +A E M +D MD+Q
Sbjct: 997 RPPARSAHILIAEDNATNQLIAATLLRRAGFTVDIVDDGVQALE-AMSLRPYDLVLMDVQ 1055
Query: 941 MPEMDGYE 948
MP + G+E
Sbjct: 1056 MPNLTGFE 1063
>gi|336323037|ref|YP_004603004.1| multi-sensor hybrid histidine kinase [Flexistipes sinusarabici DSM
4947]
gi|336106618|gb|AEI14436.1| multi-sensor hybrid histidine kinase [Flexistipes sinusarabici DSM
4947]
Length = 2009
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 169/550 (30%), Positives = 273/550 (49%), Gaps = 71/550 (12%)
Query: 407 QATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE 466
Q + AK+EE + L + AEAA+ +KS+FLA +SHEIRTP+N V+GM +L DT
Sbjct: 1252 QEVQKQTAKLEEARKNALSLAEDAEAANKSKSEFLANMSHEIRTPLNAVMGMGQLLADTP 1311
Query: 467 LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGK 526
L+ Q++Y+ S K L+ +IN+VLD +K+E+GKLEL+ SFNL +++D+ ++FS K
Sbjct: 1312 LNDQQRNYLAKIDRSSKLLLGIINDVLDVSKIEAGKLELDPHSFNLHDVVNDMRTMFSSK 1371
Query: 527 SQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 586
+Q K +EL + +P L+GD R Q+I NL+ N++KFTE GH+ + + E
Sbjct: 1372 AQKKRLELIIEADPDLPRALVGDSMRLEQVIANLLSNALKFTESGHVSLHINKARE---- 1427
Query: 587 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 646
+TSP D L SV D+G
Sbjct: 1428 -----------------------------------AATSP------DSCRLRFSVTDSGI 1446
Query: 647 GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 706
G+ E R+F PF Q S +R +GGTG+GL IS+ LV M G + S P GSTF F
Sbjct: 1447 GMNEEQMGRLFNPFSQADSSTTRKYGGTGLGLVISRRLVEAMGGRLEVTSAPGEGSTFFF 1506
Query: 707 TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 766
T S + + ++P S+S MK LVVD + V R ++ V
Sbjct: 1507 TIELPKASDQTG------LADRPASLSD---NMKFLVVDDQEPARIVLREILESWNGDVV 1557
Query: 767 VVSDQLQCLSQIASGSK---IINMILVEQEV-WEKDTSVSTLFVNNLRKLG--CGFQSKL 820
+ + + ++ + K + IL++ ++ E D + + +L + G G ++ +
Sbjct: 1558 EAAGGRKAVEEVLAAQKQNRPFDFILMDWKMPGEMDGLEAIRHLKHLHETGTLTGDETPV 1617
Query: 821 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG--VGNKGNIRNWELPSM 878
F+++ + +D + + KP+ +S L ++ +A G +G + PS
Sbjct: 1618 FMISAYSEDEIPRSESDLYQ--AFLEKPVTASELFDAIMQATGKEMGTVQQTNSATTPSF 1675
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938
+ G +L+V+DN +N +VA A +++ A V+ E G A + + D MD
Sbjct: 1676 A------GYTVLLVEDNEMNQEVATAFIEKTKAKVITAENGTDALQ-CYEENSIDLVLMD 1728
Query: 939 IQMPEMDGYE 948
+QMP MDG++
Sbjct: 1729 LQMPVMDGFD 1738
>gi|442609954|ref|ZP_21024682.1| BarA sensory histidine kinase (= VarS = GacS) [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441748546|emb|CCQ10744.1| BarA sensory histidine kinase (= VarS = GacS) [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 921
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 174/562 (30%), Positives = 280/562 (49%), Gaps = 77/562 (13%)
Query: 391 TSIGILVI---ASLVGHIFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATV 444
TSIG+ + + HI QAT + +E+ ++L K++A+ A+ KS FLA +
Sbjct: 237 TSIGVKMAFQKEEMQKHIDQATSDYRETLEQYETQNIQLSIAKREAQDANRVKSDFLAKM 296
Query: 445 SHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504
SHE+RTP+NGV+G L T L+ Q+DY+ T S +L+++I+++LD +K+E+G ++
Sbjct: 297 SHELRTPLNGVIGFTRQLYKTPLNRHQKDYLDTIVLSANSLMNIISDILDFSKLEAGAMD 356
Query: 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNS 564
LE + F LR ++++V++L + + DK +EL+VYI+ RVPE LIGDP RF+Q++ NL+ N+
Sbjct: 357 LEHIQFQLRDVVNEVMTLLAPSAHDKQLELSVYINRRVPENLIGDPTRFKQVLINLINNA 416
Query: 565 IKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624
IKFTEKG + + + G+ + D D T
Sbjct: 417 IKFTEKGSVKIDI------------------------GHRMID-------------DQRT 439
Query: 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 684
S L+VSV DTG GI E Q +FTPF Q SI+R GGTG+GL I+K++
Sbjct: 440 S-----------LLVSVSDTGVGIAQEKQDTLFTPFGQADSSITRKFGGTGLGLIITKHI 488
Query: 685 VGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVV 744
V MKG I S G+ FTF A+F N H + M +P Q + L
Sbjct: 489 VEAMKGRITLNSAQGNGTCFTFNAIF----DLPNHHFNNDMPIKP------LQHKRVLYF 538
Query: 745 DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL 804
+ + + +Q +QV SD+ L + I+ ++ ++ +
Sbjct: 539 ETQEHTHQAVAALLQEWEMQVTACSDEETFLKALEPEFNYDVCIVGHMATVDQMPALKS- 597
Query: 805 FVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864
+++ +R L+L+ N+IS + S G + + KP+ + L L
Sbjct: 598 YISKVR----SQTDYLYLMLNTISHN-MRESLIGSGADACLSKPVNNRKLCELLAAPY-- 650
Query: 865 GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATE 924
+ + ++ S + +L K+L+ DDN+ NLK+ L+ ++ G +A
Sbjct: 651 ----RLDHPDVSSDEDQMDILPLKVLVADDNDANLKLITTLLEEQVESIDKAHNGAQAIS 706
Query: 925 LLMPPHQFDACFMDIQMPEMDG 946
L H++D FMDIQMP DG
Sbjct: 707 LC-KSHKYDIIFMDIQMPITDG 727
>gi|258621553|ref|ZP_05716586.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
VM573]
gi|258586171|gb|EEW10887.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
VM573]
Length = 1325
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 168/531 (31%), Positives = 264/531 (49%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL++ +AAD AK FLA +SHEIRTPMN +LGM + ++T+LD TQ+ YV S
Sbjct: 592 ELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + F+L +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT++G I ++ +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARV---------------------- 749
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+ N+ + L+ +V+DTG GI E + +F F
Sbjct: 750 --------------RQLNEQQ------------VMLLFAVKDTGIGIAQEKLNDLFNAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQISVHSEEGKGSTFEFSVVCGLQEAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
++ G+ + LVVD + + + V VS+ + LS++
Sbjct: 842 ----------IAQPLYGLANKRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSEL 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ + W + ++ LG +K FL+ I+ N+
Sbjct: 892 Q--HKPFDMLFAD---WNMPGMNGIELLTRVKSLGLRDHTKCFLVTAYGRDINLDSENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
I ++I+KP+ S L ++ + G+ + + +N ELP + R G+K+L+V+DN
Sbjct: 947 L----IDALIVKPVNPSNLLDAIVTSYGIDHVRHKQN-ELP-LHTRPNFAGQKLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G +V G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLEETGLSVTIANNGQEALEKL-ENADFDLVLMDMQMPVMDG 1050
>gi|194333102|ref|YP_002014962.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
DSM 271]
gi|194310920|gb|ACF45315.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
DSM 271]
Length = 1040
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 170/543 (31%), Positives = 262/543 (48%), Gaps = 73/543 (13%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
K+E +L ++A+ A AKS+FLA +SHEIRTPMNGV+GM +L++T+L Q Y
Sbjct: 494 KLENASRKAKKLAEQAQEASKAKSEFLANISHEIRTPMNGVIGMTGLLLETDLTPQQHRY 553
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
T +S ++L+ LIN++LD +K+E+GKL LE + F+L+ ++DD + F+ +++ K +E
Sbjct: 554 AGTIASSAQSLLDLINDILDVSKIEAGKLTLEILDFDLQELMDDFAASFAIQAEQKNLEF 613
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
I +P L GDPGR RQI+ N+ GN++KFT KG I + V L
Sbjct: 614 LCSIEPGIPTRLTGDPGRLRQILMNIAGNAVKFTSKGEIAIYVTL--------------- 658
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
S D + L + DTG GI E
Sbjct: 659 ---------------------------------DSDCDDQVVLRFCIRDTGIGIAKEKID 685
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
+F F Q+ S +R +GGTG+GLSI+K LV M+G IG S N GS F FTA
Sbjct: 686 TLFEKFTQIDASATRQYGGTGLGLSIAKDLVELMQGSIGVESTVNQGSLFWFTAKL---- 741
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQ 771
N + Q + S F G KAL+VD ++ + G++ E D
Sbjct: 742 ---NRQTHATLQAQESKNRSLF-GQKALIVDDNATNREILSKRLLSWGMRPEESDNGQDA 797
Query: 772 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
L L + ++ + + +++ ++ E D + +R+ S ++ S+ ++
Sbjct: 798 LDMLIRASTSTDAFTIAVIDMQMPEMD---GVMLGKAIREHE-ALMSLQMIMMTSLGNNG 853
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR---- 887
++ + + + KP++ L +L + + E PS + LL R
Sbjct: 854 ESSLAEKAGFSAWLQKPVQIKKLKNAL---IALSATQEPEADEQPSQKKPNNLLNRFAEC 910
Query: 888 --KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
+IL+V+DN VN +VA LK++G V V GK+A LM +D MDIQMP MD
Sbjct: 911 KARILLVEDNIVNQQVAMLMLKKFGLHVDGVANGKEALSALM-SLPYDVVLMDIQMPVMD 969
Query: 946 GYE 948
G E
Sbjct: 970 GLE 972
>gi|427730175|ref|YP_007076412.1| PAS domain-containing protein [Nostoc sp. PCC 7524]
gi|427366094|gb|AFY48815.1| PAS domain S-box [Nostoc sp. PCC 7524]
Length = 1712
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 182/590 (30%), Positives = 287/590 (48%), Gaps = 91/590 (15%)
Query: 386 LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 445
L A++ +GI A H+ + + ++ + + K+ AEAA+ AKS+FLA +S
Sbjct: 967 LEAVAAQLGI---ALAHAHLLEQETRQREELTVKNFALEQAKRAAEAANRAKSEFLAMMS 1023
Query: 446 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505
HEIRTPMN V+GM ++L++TEL Q+D+V T S +AL+++IN++LD +K+ESGKLEL
Sbjct: 1024 HEIRTPMNAVIGMTELLLNTELTTQQRDFVETVLTSSEALLTIINDILDFSKIESGKLEL 1083
Query: 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 565
EA F+LR ++ V+ L + K+ K +ELA I +VP ++GD R RQI+ NL+ N+I
Sbjct: 1084 EAQPFDLRTCVEQVIDLLAPKAAHKDIELAYLIHPQVPTQIVGDLTRLRQILMNLLNNAI 1143
Query: 566 KFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 625
KFTEKG EV+ S+ E PV +T
Sbjct: 1144 KFTEKG----------EVILSVRAE-------------PV-----------------TTH 1163
Query: 626 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 685
K+S ++ +++DTG GIP + R+F PF+Q S++R +GGTG+GL ISK L
Sbjct: 1164 KAKNSC----QILFTIKDTGIGIPPDKMGRLFQPFVQADASMTRKYGGTGLGLVISKRLG 1219
Query: 686 GRMKGEI-----GFV----------------SIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
M G + G V ++P GSTF F + T+ +
Sbjct: 1220 EMMSGYLWVESQGCVGGNPPPQWQAKKPVLSNLPYPGSTFYF-------AMTAQVVDHAD 1272
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 784
N + + + + L+VD P K+ + +Q + L+ I G +
Sbjct: 1273 SNELTLTYPIQLRNKRLLIVDDNPTNRKILHLQTEPWQMQTYTAQSGAEALALIDQGMQ- 1331
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
++ +++ ++ E D +R+ G+Q ++ S + + + +
Sbjct: 1332 FDIAILDMQMPEMD---GLTLAQEIRQRS-GYQYLPLVILTSWGQPDNDNALRNLGFTAY 1387
Query: 845 IMKPLRSSMLAASLQRAMGVGNKGNIRN---WELPSMSLRHLL--LGRKILIVDDNNVNL 899
+ KP++ S L L A + N+ IR + P +HL L +IL+ +D VN
Sbjct: 1388 LHKPIKQSQLYDVL--ACTLENQP-IRAKLPYPYPPQINQHLAEQLPLRILLAEDIVVNQ 1444
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQ-FDACFMDIQMPEMDGYE 948
KVA LK+ G V G + +L HQ FD MD+ MPEMDG E
Sbjct: 1445 KVALLMLKKMGYRADVVANGLEVLAVLQ--HQPFDVVLMDVNMPEMDGLE 1492
>gi|258627567|ref|ZP_05722344.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
VM603]
gi|258580149|gb|EEW05121.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
VM603]
Length = 1325
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 167/531 (31%), Positives = 263/531 (49%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL++ +AAD AK FLA +SHEIRTPMN +LGM + ++T+LD TQ+ YV S
Sbjct: 592 ELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + F+L +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT++G I ++ +
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARV---------------------- 749
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+ + + L+ +V+DTG GI E + +F F
Sbjct: 750 --------------------------RQINEQQVMLLFAVKDTGIGIAQEKLNDLFNAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQISVHSEEGKGSTFEFSVVCGLQEAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
++ G+ + LVVD + + + V VS+ + LS++
Sbjct: 842 ----------IAQPLYGLANKRVLVVDDNDSARNILDSLLTAMRFNVVTVSNGFEALSEL 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ + W + ++ LG +K FL+ I+ N+
Sbjct: 892 Q--HKPFDMLFAD---WNMPGMNGIELLTRVKSLGLRDHTKCFLVTAYGRDINLDSENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
I ++I+KP+ S L ++ + G+ + + +N ELP + R G+K+L+V+DN
Sbjct: 947 L----IDALIVKPVNPSNLLDAIVTSYGIDHVRHKQN-ELP-LHTRPNFAGQKLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G +V G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLEETGLSVTIANNGQEALEKL-ENADFDLVLMDMQMPVMDG 1050
>gi|262404023|ref|ZP_06080578.1| hypothetical protein VOA_002011 [Vibrio sp. RC586]
gi|262349055|gb|EEY98193.1| hypothetical protein VOA_002011 [Vibrio sp. RC586]
Length = 1323
Score = 234 bits (596), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 172/555 (30%), Positives = 272/555 (49%), Gaps = 83/555 (14%)
Query: 398 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
+ +VG + T ++ + E + E K A+A AK FLA +SHEIRTPMN +LG
Sbjct: 573 VNGIVGLLLDLTERKVMEQE-----LREAKDAADAMSQAKGDFLANMSHEIRTPMNAILG 627
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
M + ++T+LD TQ+ YV S K L+ +INE+LD +K+E+GKL +E + FNL +LD
Sbjct: 628 MAHLALNTKLDTTQRKYVTRINESAKNLLGIINEILDFSKIEAGKLNVERIDFNLDDVLD 687
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
+V ++ S K+Q+KG+E + I +P LIGDP R Q+I NL GN++KFT +G I +T
Sbjct: 688 NVTAVISLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVIVNLCGNAVKFTHQGEIVITA 747
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 637
+ ++L+ TL GF
Sbjct: 748 RV-----------SQLNDQYVTL-------------GF---------------------- 761
Query: 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697
+V+DTG GI E + +F F Q SI+R +GGTG+GLSISK LV M G+I S
Sbjct: 762 --AVKDTGIGIAKEKLTDLFNAFSQADSSITRQYGGTGLGLSISKQLVELMGGQISVRST 819
Query: 698 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVS 754
GS F F+ V G + + ++ G+ + LVVD +
Sbjct: 820 EGEGSIFEFSVVCGLQEAKMRD------------IAQPVHGLADKRVLVVDDNDSARNIL 867
Query: 755 RYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814
+ + V VS+ + LS+I K +M+ V+ W + ++ LG
Sbjct: 868 DSLLTAMRFNVVTVSNGFEALSEIQ--HKKFDMLFVD---WNMPGMNGIELLTRVQSLGL 922
Query: 815 GFQSKLFLLANSISSSRANTSTDGVS---IPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 871
++K FL +++ + + DG + + ++I+KP+ S L ++ + G+ + +
Sbjct: 923 REKTKCFL----VTAYGRDINLDGENGKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKH 978
Query: 872 NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 931
+ P + G+ +L+V+DN VN +VA L+ G V G++A E + +
Sbjct: 979 SEHHPHS--KPNFKGKSVLLVEDNEVNQEVALGLLQDTGLRVTVANNGQEALEKI-EQAR 1035
Query: 932 FDACFMDIQMPEMDG 946
FD MD+QMP MDG
Sbjct: 1036 FDLVLMDMQMPVMDG 1050
>gi|333983217|ref|YP_004512427.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
gi|333807258|gb|AEF99927.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
Length = 926
Score = 234 bits (596), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 165/524 (31%), Positives = 260/524 (49%), Gaps = 59/524 (11%)
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
+A+AA+ AKSQFLA +SHEIRTPMNGVLGM ++L+ T L Q+ + SG++L+S+
Sbjct: 267 EAQAANAAKSQFLANMSHEIRTPMNGVLGMTELLLSTSLTPEQKRFAENVHKSGESLLSI 326
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
IN++LD +K+E+G L+LE+V F L ++DV+ LFS ++ +K +EL I+ VPE +IG
Sbjct: 327 INDILDFSKIEAGHLKLESVDFCLYQTVEDVIELFSERAYNKHLELNYRIAGDVPENVIG 386
Query: 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
DP R RQI++NL+ N+IKFT +G+I V V L + ++ + E R
Sbjct: 387 DPTRLRQILSNLLSNAIKFTSQGNITVDVGLTDTPNNNRIINDE---------------R 431
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
+ + +V DTG GI +F PF Q S +
Sbjct: 432 AYGVR-------------------------FTVSDTGIGISKGVIPNLFQPFSQADSSTT 466
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT-AVFGNGSSTSNEHNSQQMNN 727
R +GGTG+GLSI K LV M G+I + G+TFT +F +S++
Sbjct: 467 RKYGGTGLGLSICKQLVNMMSGDIEVHARIGEGTTFTVNLPLFA---------SSKEFKP 517
Query: 728 QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKI 784
S S+ G+K L++ P + + H G+ V+ L L + A+
Sbjct: 518 ASLSESAGLAGLKLLIIQTTPAYPNILQNHCLSWGMSVDTADSATIALDMLKKSATTPHP 577
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
++ +++ V + D L + L G +++ L+ + + + + I ++
Sbjct: 578 YDLAIIDMPVADMD----GLELGRLIISAPGL-ARIPLIMLPSAPYKDDVAAKRAGITAL 632
Query: 845 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAA 904
+ KP+R + L SL A+G + L + L IL+V+DN +N VA A
Sbjct: 633 VKKPVRKADLYQSLLNALGASIRLPHSETRLDMPATAAAQLSAHILLVEDNRINQAVAQA 692
Query: 905 GLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L +G V E G +A + + +D MD MP+MDGYE
Sbjct: 693 MLNSFGCTVDIAENGLEALQAI-DRKAYDLVLMDCMMPKMDGYE 735
>gi|223939259|ref|ZP_03631140.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
gi|223892091|gb|EEF58571.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
Length = 844
Score = 234 bits (596), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 170/547 (31%), Positives = 277/547 (50%), Gaps = 56/547 (10%)
Query: 406 FQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT 465
+QA ++ E ++ L +K E A +AKS+FLA +SHE+RTPMNGV+GM +L+DT
Sbjct: 156 YQALRESQKQLVEKNASLVALNQKLEEATLAKSEFLANMSHEVRTPMNGVIGMTALLLDT 215
Query: 466 ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 525
EL Q++YV ++S A++++IN++LD +K+ESGKL+LE+ F L +++ L L +
Sbjct: 216 ELTDEQREYVEATRSSADAMLTIINDILDFSKIESGKLDLESHPFELHTCIEEALDLLAP 275
Query: 526 KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 585
K+ +K ++LA + D +P+ L+GD R RQI+ NL+GN++KFT +G +F+ V
Sbjct: 276 KAAEKDLDLAYSVDDAIPKILVGDVTRLRQILVNLIGNAVKFTNEGEVFIQVK------- 328
Query: 586 SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 645
K FN D S + D+ L SV DTG
Sbjct: 329 ---------------------------PAPKHFN-DRDRSASSITGPDMWMLQFSVRDTG 360
Query: 646 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 705
GIP++ Q R+F F QV S +R +GGTG+GL+I K L M G+I S GSTF
Sbjct: 361 VGIPIDKQHRLFKSFQQVDASTTRHYGGTGLGLAICKKLSELMGGDIQVESDAGKGSTFH 420
Query: 706 FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 765
FT + +++ QQ+ QP + G + L+V+ ++ + ++ G+
Sbjct: 421 FT-IQARATASVIPPAWQQI--QP-----QLAGKRVLIVEDNATNRQILSHRCRQWGMLP 472
Query: 766 EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 825
+ ++ + L +A+ K + +++ ++ D +R+ G S LL +
Sbjct: 473 DEAANAEKALEMVAN-QKYYDAAILDVQLPGFD---GIKLAQAIRQRLNG-NSISLLLLS 527
Query: 826 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM----SLR 881
S+ +T + I + KP+R S L +L R + + + + LP M + R
Sbjct: 528 SVRLRSDDTRAAELGITIFVHKPIRPSQLLQALYRGLSLQIQREKKAPALPCMDSSFANR 587
Query: 882 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 941
L +IL+ DDN +N KV L+R G G + L +D +D+QM
Sbjct: 588 FPL---RILLADDNPINQKVGLNVLRRLGYRADVANNGLEVLRAL-DRQPYDIILLDVQM 643
Query: 942 PEMDGYE 948
PE+DG+E
Sbjct: 644 PELDGFE 650
Score = 43.5 bits (101), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 38/66 (57%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
L G+++LIV+DN N ++ + +++G +KA E++ +DA +D+Q+P
Sbjct: 443 LAGKRVLIVEDNATNRQILSHRCRQWGMLPDEAANAEKALEMVANQKYYDAAILDVQLPG 502
Query: 944 MDGYEM 949
DG ++
Sbjct: 503 FDGIKL 508
>gi|326424323|ref|NP_762902.2| chemotaxis protein CheY [Vibrio vulnificus CMCP6]
gi|319999709|gb|AAO07892.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6]
Length = 1328
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 169/532 (31%), Positives = 259/532 (48%), Gaps = 83/532 (15%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ + K A+A AK FLA +SHEIRTPMN +LGM + ++TELD +Q+ Y+ S
Sbjct: 593 LRDAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTELDPSQRKYLTRINESA 652
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
K L+ +IN++LD +K+E+GKL +E++ F+L + +++ ++ S K+Q+KG+E + I RV
Sbjct: 653 KNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFKAQEKGIEFLLDIDPRV 712
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P L+GDP R Q++ NL GN++KFTEKG I V+V
Sbjct: 713 PVGLVGDPLRLGQVLVNLCGNAVKFTEKGEILVSVM------------------------ 748
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
P +S S+D + L SV+DTG GI E + +F F Q
Sbjct: 749 -----------------------P-ESQSSDDVTLRFSVKDTGIGIDKEKIADLFNAFSQ 784
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
SI+R GGTG+GLSISK LV M G++ S +GSTFTFT G +
Sbjct: 785 ADTSITREFGGTGLGLSISKQLVELMGGQLSVSSAVGMGSTFTFTIHCGLQEA------- 837
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
+M + +S G +AL+VD + + + + VS+ + L ++ G+
Sbjct: 838 -KMRDIAKPISG-LAGKRALIVDDNDSARNILMTLLSAMQFDAKAVSNGFEALDELRQGA 895
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS--ISSSRANTSTDGVS 840
+M+ V+ W +N L L Q +L + +++ S D S
Sbjct: 896 --FDMVFVD---WNMPG------MNGLELLQTAHQERLLAETKNFLVTAYGREISMDENS 944
Query: 841 ---IPSVIMKPLRSSMLAASLQRAMG---VGNKGNIRNWELPSMSLRHLLLGRKILIVDD 894
+ S+I+KP+ S L ++ + G V +E P G+ +L+V+D
Sbjct: 945 SKLVDSLIVKPVNPSNLLDAIMDSYGIEHVTRSSTTVTFEKPVFD------GQTLLLVED 998
Query: 895 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
N VN +VA L ++ + GK A E L H D MD+QMP MDG
Sbjct: 999 NEVNQEVAIGLLNGTNLNIITADNGKLAIEAL-EHHPIDLVLMDMQMPVMDG 1049
>gi|88857797|ref|ZP_01132440.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
gi|88820994|gb|EAR30806.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
Length = 1235
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 284/578 (49%), Gaps = 100/578 (17%)
Query: 393 IGILVIA--SLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRT 450
+GIL A S+ IF N KV E ++E +KKAE+A AKS FLA +SHE+RT
Sbjct: 436 VGILANAFKSMATRIFDYNTNLEQKVSERTSELVEARKKAESASKAKSNFLAHMSHEVRT 495
Query: 451 PMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 510
PMN ++G+ +++ T+L+ Q+D++ +S L++ +N+VLD +K+E+ KL L+ F
Sbjct: 496 PMNAIIGLSQLMLKTQLNKRQRDFMEKVLSSSDVLLNTLNDVLDYSKIEANKLTLDYTPF 555
Query: 511 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK 570
++R +L V ++ + K+Q KGVEL + I +VP IGDP R QI+ NL N++KFTE+
Sbjct: 556 DIRDVLRRVTNISAYKAQYKGVELLLDIDQKVPFQWIGDPIRLGQILINLASNAVKFTEQ 615
Query: 571 GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 630
G + + V L+E+ NQ +
Sbjct: 616 GEVIIRVKLLEQ-----------------------------------HNQQST------- 633
Query: 631 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKG 690
L SV DTG GI E + +FTPFMQ+ SI+R +GGTG+GL+IS+ L M G
Sbjct: 634 ------LRFSVIDTGIGIEQERINLLFTPFMQMDSSITRKYGGTGLGLAISRQLTELMGG 687
Query: 691 EIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIR 750
I S N+GS F FT T N+ S++ P + +GM+ALVVD +
Sbjct: 688 RIWVESQLNVGSQFHFTCKL-----TLND--SEKTPLMP--FHNRLKGMRALVVDDNAMA 738
Query: 751 AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVN-NL 809
+V + LG++V V+D + ++ ++ K T +F++ N+
Sbjct: 739 REVLADILTSLGLEVTTVADGYAGIDEL-------------EKACSKQTPYDVVFLDWNI 785
Query: 810 RKL-GCGFQSKL-----------FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAAS 857
+ G SK+ L+ + + + V+I +I KP+ +S + +
Sbjct: 786 PGINGVETASKIERNVHITKPAAMLMVTAYDVDKFESDAHNVNIKKIISKPVDASCIHDN 845
Query: 858 L---------QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKR 908
L R + N+ N S+ L L +K+LIVDD+ +N +VA+ L
Sbjct: 846 LVEIFFQEKTSRTCAQKRELNLNN----SLDLSA-LRDKKVLIVDDSILNREVASEFLLD 900
Query: 909 YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
G V G++A +++ H +D MD+QMP MDG
Sbjct: 901 VGIQVSTANNGQQALDMINQYH-YDLVLMDVQMPVMDG 937
>gi|428214525|ref|YP_007087669.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002906|gb|AFY83749.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1970
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 168/558 (30%), Positives = 272/558 (48%), Gaps = 69/558 (12%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+ I V + + +++ +++A A KSQFLA +SHEIRTPMNGVLGM ++L+ T+L
Sbjct: 1270 IGGIVMVSSEINELVKAREQALEAARLKSQFLANMSHEIRTPMNGVLGMTELLLRTQLTE 1329
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
QQD+V+T + SG+ L++LI+++LD +K+E+G++ L+ F+L L+D + LF+ +
Sbjct: 1330 QQQDFVKTLKISGENLLTLIDDILDFSKLEAGEMRLDHHEFDLNRTLEDTVDLFTLSAAS 1389
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K +ELA ++ VP L GD R RQI+TNL+GN+IKFTE+G + +TV +
Sbjct: 1390 KEIELAFLVALDVPRYLKGDASRLRQILTNLLGNAIKFTERGEVVITVNRAD-------- 1441
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
S+ + +L A R ++L SV D+G GI
Sbjct: 1442 ----STPEQSLEAPDGAAR--------------------------LSLTFSVRDSGIGIG 1471
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
++F F QV S +R +GGTG+GL+I K L M GEIG S +GS F FT
Sbjct: 1472 PSDCKKLFQSFSQVDTSTTRKYGGTGLGLAICKQLTQLMGGEIGVESQLGVGSIFWFTVQ 1531
Query: 710 FGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS 769
F + Q ++ ++ S +G K L+VD PI +V R G++V
Sbjct: 1532 FERVETIPPNLGFTQPSSL-DAAGSILRGKKLLIVDDSPINRQVVRQQASHWGMEVSEAE 1590
Query: 770 DQLQC---LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 826
D L+ L + S + L++ ++ + D + + L + ++ S
Sbjct: 1591 DGLEAIKLLRKAVSTGNPFTLALLDMQMPKMDGEI----LGQLILTDPLLATTSLIMMTS 1646
Query: 827 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV-GNKGNI--------------- 870
I+ S + + ++KP++ + L L R + G +G+
Sbjct: 1647 INESYQARKFLDLGFSAYLIKPIKEARLLECLIRGISSDGYEGSSLSAAESGVAASAVPG 1706
Query: 871 RNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH 930
NWE + IL+V+D +N KV L+ G C G++A + M
Sbjct: 1707 NNWEPEEIK------ALNILLVEDTRINQKVVLNQLESLGFEADCANNGQEALD-KMQVK 1759
Query: 931 QFDACFMDIQMPEMDGYE 948
+++ FMD QMP +DGY+
Sbjct: 1760 EYNLVFMDCQMPVLDGYD 1777
>gi|383761012|ref|YP_005439994.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381381280|dbj|BAL98096.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 1606
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 173/545 (31%), Positives = 264/545 (48%), Gaps = 85/545 (15%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
++ E H +L +A+AA AKS+FL+ +SHEIRTP+NGV+GM +L+DT L Q+ Y
Sbjct: 1065 ELAEALHRAEQLAVEAQAASRAKSEFLSVMSHEIRTPLNGVIGMTGLLLDTPLTSEQRQY 1124
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
A+ SG+ L++LIN++LD +K+E+ KLELE + F+LRA+++D + + +G++Q KG+EL
Sbjct: 1125 AEIARTSGETLLALINDILDFSKIEARKLELERLRFDLRAMVEDAVDILAGRAQAKGLEL 1184
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
++ P +IGDPGR RQI+ NL GN+IKFTE+G + + V + E + +
Sbjct: 1185 VCFVEPEAPTYVIGDPGRLRQIVLNLAGNAIKFTEQGEVVIRVGVAAETATHVTLRF--- 1241
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
+ K+T G P +DR H + F+ F+
Sbjct: 1242 TVKDTGIGIP-SDRLH--RLFQPFS----------------------------------- 1263
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
QV S +R GGTG+GL ISK L M GE+G S P +GS F FTAV +
Sbjct: 1264 -------QVDSSTTRRFGGTGLGLVISKQLAELMGGEVGVESTPGVGSVFWFTAVVEKCA 1316
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ--- 771
+ S + + LVVD +R + L Q D+
Sbjct: 1317 DA----------GEAPETSLDLHHARLLVVDDN----DANRLLVHTLVTQWNGRCDEAVN 1362
Query: 772 ----LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
L L + A+ + L++ ++ + D + +R+ Q+ L L+
Sbjct: 1363 AHHALSMLREAAAQGDPYALALLDMQMPDAD---GLTLASWIREDPVLAQTPLILIT--- 1416
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL--L 885
S + + I KPLR S L L A+G + PS + +
Sbjct: 1417 SLGYQGAAEQDRLFAAQITKPLRQSQLREQLALALGYRQRSL-----QPSTTAAVVAPPP 1471
Query: 886 GR--KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
GR +IL+ +DN VN KVA LK+ G + V G++A L + +D MD +MPE
Sbjct: 1472 GRPLRILLAEDNVVNQKVALTMLKKLGYSADAVANGREALAALSEIN-YDLVLMDCEMPE 1530
Query: 944 MDGYE 948
MDG+E
Sbjct: 1531 MDGFE 1535
>gi|88858180|ref|ZP_01132822.1| sensor protein barA [Pseudoalteromonas tunicata D2]
gi|88819797|gb|EAR29610.1| sensor protein barA [Pseudoalteromonas tunicata D2]
Length = 925
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 160/520 (30%), Positives = 252/520 (48%), Gaps = 71/520 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A+ KS FLA +SHE+RTP+NGV+G L T L+ Q+DY+ T + S +L+
Sbjct: 279 KKEAQDANRVKSDFLAKMSHELRTPLNGVVGFTRQLYKTPLNKHQKDYLDTIELSANSLL 338
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+G +ELE++ F LR +++VL+L + + DK +EL++ I D VP++L
Sbjct: 339 AIINDILDFSKLEAGAMELESIHFQLRDTVNEVLTLLAPSAHDKNLELSINIHDNVPDSL 398
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP RF+QI+ NL+ N+IKFTE GH+ + V
Sbjct: 399 IGDPTRFKQILINLISNAIKFTESGHVLIDV----------------------------- 429
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
C + +T ++ V++ D+G GI Q +F+ F Q S
Sbjct: 430 -DCRHYANQRT------------------SIFVAINDSGIGISANKQDALFSAFGQADSS 470
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R GGTG+GL I+K+LV M G I S GS FTF A F H S +
Sbjct: 471 ITRKFGGTGLGLIITKHLVEAMGGHISLNSAVGKGSCFTFNAFF----EQPKRHYSDNLP 526
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
P + + L + + ++ +Q + V L L Q +G +
Sbjct: 527 TTP------LEQKRVLYFETHHHTHEATQSLLQSWNMHVTACL-SLAELEQALTGEFSFD 579
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+ ++ + S VN +R C + L+L+ N++S + G + +
Sbjct: 580 IAILGHAASLDNMSEIKSLVNRVRP-QCDY---LYLMVNTVSHNMREAFI-GTGADACLS 634
Query: 847 KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 906
KPL L SL + + + + P + R +L K+L+VDDN+ NLK+ L
Sbjct: 635 KPLNHRKLCESLAAPYRLDHP----SIQTPEQAQR--ILPIKVLVVDDNDANLKLMCTLL 688
Query: 907 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+ G +A L H++D F+DIQMP MDG
Sbjct: 689 AEQIEFIDTAHNGSQALS-LAKTHKYDLIFLDIQMPIMDG 727
>gi|430747804|ref|YP_007206933.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
gi|430019524|gb|AGA31238.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
Length = 912
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 170/550 (30%), Positives = 260/550 (47%), Gaps = 76/550 (13%)
Query: 416 VEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 472
V + H EL K+ AEAA+ AK FLA VSHEIRTPMN +LGM ++ +DT L Q+
Sbjct: 232 VTQAKHAEEELRLAKETAEAANRAKDAFLANVSHEIRTPMNAILGMTELTLDTPLTDEQR 291
Query: 473 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 532
Y+ T + S AL+S+IN++LD +K+E+GKLEL+ F+LR +L + L + ++ KG+
Sbjct: 292 KYLATVKTSADALLSVINDLLDFSKIEAGKLELDFADFSLRRVLGETLRALAFRAHRKGL 351
Query: 533 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592
EL I VP+ LIGD GR RQ++ NL+GN+IKFTE+G I V V E
Sbjct: 352 ELVCQIQPDVPDALIGDAGRLRQVLLNLIGNAIKFTEQGEIVVRV--------------E 397
Query: 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 652
+ T P L+ S+ DTG GIPL+
Sbjct: 398 TVPAPGTKDSIPP------------------------------GLLFSIVDTGIGIPLDK 427
Query: 653 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712
Q +IF F Q S +R +GGTG+GLSI+ LV M G+I S+P GSTF FT F
Sbjct: 428 QQKIFQAFEQQDSSTTRKYGGTGLGLSIASQLVALMGGQITVESVPGRGSTFCFTVHFAE 487
Query: 713 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 772
+ H +P ++ G++ L+VD + ++ V D L
Sbjct: 488 -----HPHPIDHPFERP---LTDLHGLRILIVDDNATNRHILEEWLRSWKTDPTSVGDGL 539
Query: 773 QCLSQIASG---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 829
+ L + G + +++L++ + T L + L+ + L + +
Sbjct: 540 KALDALWRGVALGRPFSLVLLDARM--PGTDGLALAASILQSPELSASRIILLTSEDLHG 597
Query: 830 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL---------PSMSL 880
A T G++ + MKP++ L + R + P+ S
Sbjct: 598 DIARYRTLGIA--AYTMKPVQQEELLEIIHRVLSRPTPAEPAAPTATTTSPVPVDPAESG 655
Query: 881 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 940
L ++L+ +DN +N ++ L+R G VV V G +A + H FD +D+
Sbjct: 656 SRL----RVLVAEDNPLNQELVEHLLRRRGHDVVVVGDGLEALNAI-DRHDFDLSLLDVH 710
Query: 941 MPEMDGYEML 950
MPE DG++++
Sbjct: 711 MPEFDGFQVI 720
>gi|359441595|ref|ZP_09231486.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. BSi20429]
gi|392533278|ref|ZP_10280415.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas arctica A
37-1-2]
gi|358036519|dbj|GAA67735.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. BSi20429]
Length = 924
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 171/546 (31%), Positives = 266/546 (48%), Gaps = 73/546 (13%)
Query: 404 HIFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 460
+I QAT + +E+ +EL KK+A+ A+ KS FLA +SHE+RTP+NGV+G
Sbjct: 254 NIDQATSDYRETLEQYETSNIELSFAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTR 313
Query: 461 MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 520
L T L+ Q+DY+ T S +L+++I+++LD +K+E+G +ELE++ F LR +++V+
Sbjct: 314 QLYKTPLNKHQKDYLDTIMLSANSLMTIISDILDFSKLEAGAMELESIQFQLRDAVNEVM 373
Query: 521 SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580
+L + + DK +EL++YI+ +VP+ L GDP RF+Q++ NL+ N+IKFTEKG I V +
Sbjct: 374 TLLAPSAHDKQLELSIYINQQVPDDLTGDPTRFKQVLINLLSNAIKFTEKGSIKVDIS-- 431
Query: 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 640
++D D TS L+VS
Sbjct: 432 HRLLD-----------------------------------DERTS-----------LLVS 445
Query: 641 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700
V DTG GIP++ Q +FTPF Q SI+R GGTG+GL I+K++V M G I S P
Sbjct: 446 VTDTGVGIPMDKQDSLFTPFGQADSSITRKFGGTGLGLIITKHIVEAMNGRITLNSAPGN 505
Query: 701 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 760
G+ FTF +VF N N+ P + G + L ++P + +
Sbjct: 506 GTCFTFNSVFSLP-------NHVFTNDLP---TKSLIGKRILYLEPHEHTHHAVLSLLTQ 555
Query: 761 LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 820
V ++ L I + ++ L+ D +V +R+ L
Sbjct: 556 WESSVTACFNETSFLDAIKNTEHKYDVCLIGHMASVDDMQQLKSYVKAVRE----STDYL 611
Query: 821 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL 880
+L+ N++S + G + + KPL L L + + + N E +
Sbjct: 612 YLMLNTVSHNMREAFI-GSGADACLSKPLNHRKLCEVLAAPYRLDHPTH--NIEQNDQA- 667
Query: 881 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 940
LL K+L+VDDN+ NLK+ L + G +A L H++D FMDIQ
Sbjct: 668 ---LLPLKVLVVDDNDANLKLLHTLLSEQIEVIETAHNGSQAYS-LSKSHKYDIIFMDIQ 723
Query: 941 MPEMDG 946
MP MDG
Sbjct: 724 MPIMDG 729
>gi|332532631|ref|ZP_08408507.1| sensory histidine kinase BarA [Pseudoalteromonas haloplanktis
ANT/505]
gi|332037847|gb|EGI74296.1| sensory histidine kinase BarA [Pseudoalteromonas haloplanktis
ANT/505]
Length = 924
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 171/546 (31%), Positives = 266/546 (48%), Gaps = 73/546 (13%)
Query: 404 HIFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 460
+I QAT + +E+ +EL KK+A+ A+ KS FLA +SHE+RTP+NGV+G
Sbjct: 254 NIDQATSDYRETLEQYETSNIELSFAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTR 313
Query: 461 MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 520
L T L+ Q+DY+ T S +L+++I+++LD +K+E+G +ELE++ F LR +++V+
Sbjct: 314 QLYKTPLNKHQKDYLDTIMLSANSLMTIISDILDFSKLEAGAMELESIQFQLRDAVNEVM 373
Query: 521 SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580
+L + + DK +EL++YI+ +VP+ L GDP RF+Q++ NL+ N+IKFTEKG I V +
Sbjct: 374 TLLAPSAHDKQLELSIYINQQVPDDLTGDPTRFKQVLINLLSNAIKFTEKGSIKVDIS-- 431
Query: 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 640
++D D TS L+VS
Sbjct: 432 HRLLD-----------------------------------DERTS-----------LLVS 445
Query: 641 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700
V DTG GIP++ Q +FTPF Q SI+R GGTG+GL I+K++V M G I S P
Sbjct: 446 VTDTGVGIPMDKQDSLFTPFGQADSSITRKFGGTGLGLIITKHIVEAMSGRITLNSAPGN 505
Query: 701 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 760
G+ FTF +VF N N+ P + G + L ++P + +
Sbjct: 506 GTCFTFNSVFSLP-------NHVFTNDLP---TKSLIGKRILYLEPHEHTHHAVLSLLTQ 555
Query: 761 LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 820
V ++ L I + ++ L+ D +V +R+ L
Sbjct: 556 WESNVTACFNETSFLDAIKNTEHKYDVCLIGHMASVDDMQQLKSYVKAVRE----STDYL 611
Query: 821 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL 880
+L+ N++S + G + + KPL L L + + + N E +
Sbjct: 612 YLMLNTVSHNMREAFI-GSGADACLSKPLNHRKLCEVLAAPYRLDHPTH--NIEQNDQA- 667
Query: 881 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 940
LL K+L+VDDN+ NLK+ L + G +A L H++D FMDIQ
Sbjct: 668 ---LLPLKVLVVDDNDANLKLLHTLLSEQIEVIETAHNGSQAYS-LSKSHKYDIIFMDIQ 723
Query: 941 MPEMDG 946
MP MDG
Sbjct: 724 MPIMDG 729
>gi|428304414|ref|YP_007141239.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
gi|428245949|gb|AFZ11729.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
Length = 1100
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 162/526 (30%), Positives = 268/526 (50%), Gaps = 61/526 (11%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K AE+A AKS+FLA +SHEIRTP+N V+GM +L+DT LD QQ++ T ++SG+AL+
Sbjct: 439 KIAAESATRAKSEFLANMSHEIRTPLNAVIGMTTLLLDTHLDPQQQNFTETIRSSGEALL 498
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+L+N++LD +K+ESGKL+L+ FNLRA +++ L L + K+ +K +ELA I P+T+
Sbjct: 499 TLVNDILDFSKIESGKLDLDQYPFNLRACIEESLDLIASKAGEKKLELAYLIYPPTPKTI 558
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R RQI+ N++ N++KFT G + VTV + ++ ++LS N Y +
Sbjct: 559 VGDHNRLRQILVNILSNAVKFTPAGEVVVTV--------TTKILSKLSEVDNFPQKYEIQ 610
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+++DTG GIP + ++F F QV S
Sbjct: 611 --------------------------------FAIKDTGIGIPNDRIEKLFQSFSQVDSS 638
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+ISK LV M G+I S + GSTF FT + + ++ HN+++++
Sbjct: 639 TTRHYGGTGLGLAISKQLVELMDGQIWVESEVDRGSTFNFTLIVESTQDQADIHNTKEIH 698
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
G + L+VD +V +Q I + + LS + + +
Sbjct: 699 --------PLSGKRILIVDNNITNQQVLILQMQCWKIITRAATSVQEALSLLQAEQ--FD 748
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKL-GCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 845
+ ++++++ E D + + +R+L C Q+ ++ NS+ + + +
Sbjct: 749 LAILDRQMPEMD---GVMLTSAIRQLPSC--QNLPLVMLNSLGNDQITEQNSEADFAGFL 803
Query: 846 MKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR---KILIVDDNNVNLKVA 902
KP++ S L +L A+ G + ++ L R +IL+ +D VN K+
Sbjct: 804 NKPVKQSQL-YNLLVAIFTGQSIKLTSYHPNQAKFDPHLATRIPLRILVAEDFVVNQKMI 862
Query: 903 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L+R G G + E L +D MD+QMPEMDG E
Sbjct: 863 LLMLERMGYRADIANNGFEVLEALH-RQPYDLVLMDVQMPEMDGLE 907
>gi|227819691|ref|YP_002823662.1| sensor-regulator protein [Sinorhizobium fredii NGR234]
gi|227338690|gb|ACP22909.1| putative sensor-regulator protein [Sinorhizobium fredii NGR234]
Length = 989
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 164/523 (31%), Positives = 256/523 (48%), Gaps = 68/523 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+ AE A +AKS+FLA +SHEIRTPMNGV+G+ ++L TEL Q+ YV S L+
Sbjct: 336 RDAAEQASIAKSEFLANMSHEIRTPMNGVIGIAELLEGTELSEQQRRYVSIILHSADTLM 395
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
LIN++LD +K+E+G+LELE + F LR L D L + ++ DKG+ELA +I VP+ L
Sbjct: 396 DLINDILDFSKIEAGRLELETIPFVLRDTLGDTLQTLAKRAADKGLELACHIPPEVPDHL 455
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R RQII NL+GN+IKFTE G + V V LV + ++ E+ ++T G P A
Sbjct: 456 MGDPTRLRQIIVNLVGNAIKFTENGEVVVDVTLVGQGDHGAHLQFEV---RDTGIGIPEA 512
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
Q RIF F Q S
Sbjct: 513 Q---------------------------------------------QERIFEAFAQADAS 527
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I+ L +M G + S P +GS FTF A FG ++
Sbjct: 528 TTRQYGGTGLGLAIAAQLAEKMGGRMQLDSKPGVGSVFTFAADFGLAPEEGKARPVRE-- 585
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--ASGSKI 784
+E G + LVVD ++ + G+ V +D + L+ + ASG+ +
Sbjct: 586 -------AELHGRRVLVVDDNATNRQILEEIVVNWGMIPIVATDGMAALNALEQASGA-L 637
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
++ L++ + +S + +L G + ++ +S + + +
Sbjct: 638 PDLALLDVMM----PGMSGFELAACLRLRSGLKDTRIVMMSSAGRPSDEALLQKLDVSRL 693
Query: 845 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL-LGRKILIVDDNNVNLKVAA 903
++KP++ S L ++ A+GV + + + P+ + RH G +L+ +D VN +VA
Sbjct: 694 LVKPVKQSDLLNAITNALGVSMRED--EGDGPAGAARHRTSPGLTVLLAEDGAVNRQVAV 751
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
L + G VV V G++A E + +D MD+ MP MDG
Sbjct: 752 DLLTKRGHRVVAVGNGQEAVEAV-ERGGYDLVLMDVHMPVMDG 793
>gi|427707466|ref|YP_007049843.1| multi-sensor hybrid histidine kinase [Nostoc sp. PCC 7107]
gi|427359971|gb|AFY42693.1| multi-sensor hybrid histidine kinase [Nostoc sp. PCC 7107]
Length = 1567
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 175/580 (30%), Positives = 280/580 (48%), Gaps = 72/580 (12%)
Query: 386 LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 445
L A++ +GI A H+ + + ++ + + K++AEAA+ AKS+FLA +S
Sbjct: 842 LEAVAAQVGI---ALAQAHLLEQETRQREELTLKNFALQQAKRQAEAANRAKSEFLAMMS 898
Query: 446 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505
HEIRTPMN V+GM ++L+DT+L Q+D+V T SG AL+++IN++LD +K+ESG+LEL
Sbjct: 899 HEIRTPMNAVIGMTELLLDTDLTPQQRDFVETVHTSGDALLTIINDILDFSKIESGRLEL 958
Query: 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 565
E F+L+A ++ V+ L + K+ K +EL I +VP +IGD R RQ++ NL+ N+I
Sbjct: 959 EEKPFDLKACVEQVIDLLAPKAAQKQIELIYLIHPQVPTQIIGDITRLRQVLMNLLNNAI 1018
Query: 566 KFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 625
KFT++G + ++VY +T N D S
Sbjct: 1019 KFTQQGEVVLSVYA---------------------------------NHLETQNLDTSC- 1044
Query: 626 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 685
++ S++DTG GI E +R+F PF Q S++R +GGTG+GL IS+ L
Sbjct: 1045 ----------KILFSIQDTGIGITPEKMARLFQPFAQADASMTRLYGGTGLGLVISQRLS 1094
Query: 686 GRMKGEIGFVSIPNIG---------STFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS-- 734
M G + S IG S + +G++ S + N P+S +
Sbjct: 1095 EMMNGSLWVESRGCIGGNPDPGWQNSKPVLSTFSHHGATFYFTITSTVLTNAPSSEVTTS 1154
Query: 735 --EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQ 792
+ G + L+VD P +K+ +Q +Q + L+ +A G + IL
Sbjct: 1155 VVQLAGKRLLIVDDNPTNSKILSLQVQFWQMQTYIAESSAAALALLAQGMEFDIAILDLP 1214
Query: 793 EVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS 852
+ L + + G Q+ +L S+ + + V + + KP++ S
Sbjct: 1215 R-----PKIDGLELARAIRQQPGGQNLPLVLLTSLGTPEICRDFNDVGLVVCLNKPIKQS 1269
Query: 853 MLAASLQRAMGVG-NKGNIRNWELPSMSLRHLL--LGRKILIVDDNNVNLKVAAAGLKRY 909
L L G NI + + HL + +IL+ +D+ VN KVA L++
Sbjct: 1270 QLHYVLTHTCGNNLLPANISRAYISPFDI-HLAEKMPLRILVAEDSLVNQKVALLMLQKI 1328
Query: 910 GAAVVCVERGKKATELLMPPHQ-FDACFMDIQMPEMDGYE 948
G V V G++ + L HQ +D MDI MPEMDG E
Sbjct: 1329 GYQVDVVGDGREVIQALQ--HQPYDVVLMDIHMPEMDGLE 1366
>gi|398348886|ref|ZP_10533589.1| multi-sensor hybrid histidine kinase [Leptospira broomii str. 5399]
Length = 847
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 163/519 (31%), Positives = 255/519 (49%), Gaps = 72/519 (13%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
AKS+FLA +SHEIRTPMNGV+GM ++L+D++L +++Y Q SG++L+S+IN++LD
Sbjct: 332 AKSEFLAMMSHEIRTPMNGVIGMTELLLDSDLTGEKREYAEIIQKSGESLLSIINDILDY 391
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+ESG L LE+ F++ ++ L LF + +KG++L +I VP+ +IGD R RQ
Sbjct: 392 SKIESGTLRLESKEFSILETAEETLDLFRSSAAEKGIDLICHIDPNVPDIIIGDKLRLRQ 451
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
++ NL GNS+KFTEKG +F++ A+ K F
Sbjct: 452 VLINLFGNSLKFTEKGEVFLS-----------------------------AEVSKKDKSF 482
Query: 616 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
T SV DTG GIP E Q ++F PF QV S +R +GGTG
Sbjct: 483 CTIR-------------------FSVRDTGIGIPKEKQKQLFNPFYQVDTSSTRKYGGTG 523
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735
+GLSIS L+ M G I S N G+TF+F + S E +Q + PN
Sbjct: 524 LGLSISYRLIKMMGGRIWLESDVNKGTTFSFEI-----QAESVEQKNQVI---PNINYPG 575
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW 795
+ K L++D ++ + +Q LG+ S + + LS + G IL E +
Sbjct: 576 LENRKILIIDDNATNLRILSHQLQILGLMTFSSSSKEEALSLLDLG------ILPELAIL 629
Query: 796 EKDTSVS--TLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 853
+ + + + LR+ F L LL++SI + D + + + KP++
Sbjct: 630 DYNLAGNNGVQIAQELRRRNFLF--PLILLSSSILDIKEREIADQLFLRQ-LSKPVKKKE 686
Query: 854 LAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR----KILIVDDNNVNLKVAAAGLKRY 909
L + + G + N + + LL ++LI +DN +NL +A L++
Sbjct: 687 LEQIVTEILITGTEKGKANRSSSYLEKQKDLLQSTYPFEVLIAEDNEINLSLAKRILQKL 746
Query: 910 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G + + GK+ L +FD MD+ MPEMDG +
Sbjct: 747 GYSPIVATNGKQVLNRLREA-KFDVVLMDVHMPEMDGIQ 784
>gi|37677132|ref|NP_937528.1| sensory box sensor histidine kinase/response regulator [Vibrio
vulnificus YJ016]
gi|37201677|dbj|BAC97498.1| sensory box sensor histidine kinase/response regulator [Vibrio
vulnificus YJ016]
Length = 1328
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 169/532 (31%), Positives = 258/532 (48%), Gaps = 83/532 (15%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ E K A+A AK FLA +SHEIRTPMN +LGM + ++TELD +Q+ Y+ S
Sbjct: 593 LREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTELDPSQRKYLTRINESA 652
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
K L+ +IN++LD +K+E+GKL +E++ F+L + +++ ++ S K+Q+KG+E + I RV
Sbjct: 653 KNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFKAQEKGIEFLLDIDPRV 712
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P L+GDP R Q++ NL GN++KFTEKG I V+V
Sbjct: 713 PVGLVGDPLRLGQVLVNLCGNAVKFTEKGEILVSV------------------------- 747
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
P +S S+D + L SV+DTG GI E + +F F Q
Sbjct: 748 MP-----------------------ESQSSDDVTLRFSVKDTGIGIDKEKIADLFNAFSQ 784
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
SI+R GGTG+GLSISK LV M G++ S +GSTFTFT G +
Sbjct: 785 ADTSITREFGGTGLGLSISKQLVELMGGQLSVSSAVGMGSTFTFTIHCGLQEA------- 837
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
+M + +S G +AL+VD + + + + VS+ + L ++ +
Sbjct: 838 -KMRDIAKPISG-LAGKRALIVDDNDSARNILMTLLSAMQFDAKAVSNGFEALDELRQST 895
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS--ISSSRANTSTDGVS 840
+M+ V+ W +N L L Q +L + +++ S D S
Sbjct: 896 --FDMVFVD---WNMPG------MNGLELLQTAHQERLLAETKNFLVTAYGREISMDENS 944
Query: 841 ---IPSVIMKPLRSSMLAASLQRAMG---VGNKGNIRNWELPSMSLRHLLLGRKILIVDD 894
+ S+I+KP+ S L ++ + G V +E P G+ +L+V+D
Sbjct: 945 SKLVDSLIVKPVNPSNLLDAIMDSYGIEHVTRSSTTATFEKPVFD------GQTLLLVED 998
Query: 895 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
N VN +VA L ++ + GK A E L H D MD+QMP MDG
Sbjct: 999 NEVNQEVAIGLLNGTNLNIITADNGKLAIEAL-ENHPIDLVLMDMQMPVMDG 1049
>gi|350552380|ref|ZP_08921582.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349794322|gb|EGZ48139.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 2334
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 162/548 (29%), Positives = 270/548 (49%), Gaps = 68/548 (12%)
Query: 405 IFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 464
IF+ + + V +D + + +++AE A AKS FLA +SHEIRTPMN V+G+ +L+
Sbjct: 1568 IFKLSSGEVVAVYDDLTEIKQAQQEAELASRAKSDFLANMSHEIRTPMNAVIGLSQLLLQ 1627
Query: 465 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 524
T LD QQDY+ + + L+ +IN++LD +K+ESG LELE F + ILD + LF
Sbjct: 1628 TPLDERQQDYLNKIHNASRMLLGIINDILDYSKIESGNLELEQTGFQITDILDQMAVLFG 1687
Query: 525 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 584
+ +KG+EL +I VP+ L+GD R Q+++NL+ N+IKFT +G + +TV + +
Sbjct: 1688 EAASEKGLELLFHIHAEVPQALVGDALRLSQVLSNLLSNAIKFTLQGSVTLTVSQIHQ-- 1745
Query: 585 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644
P + + L V+D+
Sbjct: 1746 ----------------------------------------DPHQ------VQLRFCVKDS 1759
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G G+ E Q+++F PF Q S +R GGTG+GL IS+ LV +M G + S G+ F
Sbjct: 1760 GIGMTPEQQAKLFKPFTQADTSTTRKFGGTGLGLVISRKLVEKMGGSLQLESAIEKGACF 1819
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 764
F + S+ + N P E QG + L+VD + R + + +
Sbjct: 1820 WFDLSLPICTVLSH------ITNCP-----ETQGRRILIVDDHASARLILREMLLQCDYE 1868
Query: 765 VEVVSDQLQCLSQIASGSKI---INMILVEQEVWEKDTSVSTL-FVNNLRKLGCGFQSKL 820
+E + Q + ++ + + N IL++ ++ + T+ + L+ G
Sbjct: 1869 IEEANSGEQAIEKMLAAEQAGGGFNFILLDWKMPNGMDGLQTIDHIKQLQASGVLRNQHT 1928
Query: 821 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL 880
+L S + ++ + D I + + KP+ ++ L +LQRA + ++ ++ +
Sbjct: 1929 EILMIS-AYNKQEIALDSHHISAFLSKPVTATTLFEALQRAEKGDTQSATKHRQISKVP- 1986
Query: 881 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 940
L G +IL+V+DN +N +VA L++ GA V VE G +A + + H FD MD+Q
Sbjct: 1987 --ALTGLQILLVEDNEINQEVALRMLEKTGAEVFIVEDGAQAVAVALQTH-FDLILMDLQ 2043
Query: 941 MPEMDGYE 948
MP MDG+E
Sbjct: 2044 MPVMDGFE 2051
>gi|320159220|ref|YP_004191598.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
gi|319934532|gb|ADV89395.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
Length = 1320
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 169/532 (31%), Positives = 258/532 (48%), Gaps = 83/532 (15%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ E K A+A AK FLA +SHEIRTPMN +LGM + ++TELD +Q+ Y+ S
Sbjct: 585 LREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTELDPSQRKYLTRINESA 644
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
K L+ +IN++LD +K+E+GKL +E++ F+L + +++ ++ S K+Q+KG+E + I RV
Sbjct: 645 KNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVISFKAQEKGIEFLLDIDPRV 704
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P L+GDP R Q++ NL GN++KFTEKG I V+V
Sbjct: 705 PVGLVGDPLRLGQVLVNLCGNAVKFTEKGEILVSV------------------------- 739
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
P +S S+D + L SV+DTG GI E + +F F Q
Sbjct: 740 MP-----------------------ESQSSDDVTLRFSVKDTGIGIDKEKIADLFNAFSQ 776
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
SI+R GGTG+GLSISK LV M G++ S +GSTFTFT G +
Sbjct: 777 ADTSITREFGGTGLGLSISKQLVELMGGQLSVSSAVGMGSTFTFTIHCGLQEA------- 829
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
+M + +S G +AL+VD + + + + VS+ + L ++ +
Sbjct: 830 -KMRDIAKPISG-LAGKRALIVDDNDSARNILMTLLSAMQFDAKAVSNGFEALDELRQST 887
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS--ISSSRANTSTDGVS 840
+M+ V+ W +N L L Q +L + +++ S D S
Sbjct: 888 --FDMVFVD---WNMPG------MNGLELLQTAHQERLLAETKNFLVTAYGREISMDENS 936
Query: 841 ---IPSVIMKPLRSSMLAASLQRAMG---VGNKGNIRNWELPSMSLRHLLLGRKILIVDD 894
+ S+I+KP+ S L ++ + G V +E P G+ +L+V+D
Sbjct: 937 SKLVDSLIVKPVNPSNLLDAIMDSYGIEHVTRSSTTATFEKPVFD------GQTLLLVED 990
Query: 895 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
N VN +VA L ++ + GK A E L H D MD+QMP MDG
Sbjct: 991 NEVNQEVAIGLLNGTNLNIITADNGKLAIEAL-ENHPIDLVLMDMQMPVMDG 1041
>gi|428215971|ref|YP_007089115.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428004352|gb|AFY85195.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1259
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 175/547 (31%), Positives = 269/547 (49%), Gaps = 77/547 (14%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ ++K+ A AA+ AKS+FLA++SHEIRTPMNGVLGM +L+ TEL+ Q+ Y +T +S
Sbjct: 551 LAQMKQAAVAANRAKSEFLASMSHEIRTPMNGVLGMTGLLLATELNPQQKHYAQTIFSSA 610
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
+ L+++IN++LD +K+E+ ++ L ++F L ++ V+ L +Q+KG++L + I V
Sbjct: 611 EHLLTVINDILDFSKLEAREMHLNPINFELDECIESVVDLMVAPAQEKGLDLGICIDRNV 670
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P L GDP R RQI+ NL+ N+IKFTE G + + V V E + +
Sbjct: 671 PRHLFGDPARLRQILLNLVNNAIKFTEVGEVSIAVCAVSE------------DATSKADS 718
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
P A R + + L +V DTG GI + Q+++F F Q
Sbjct: 719 VPPAQR------------------------NPVTLRFAVTDTGIGILPQNQTKLFQSFSQ 754
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +R +GGTG+GL+ISK LV M+G+IG S N GSTF FT + N
Sbjct: 755 VDSSSTRQYGGTGLGLAISKQLVELMEGKIGVESELNQGSTFWFTVTL------PVQQNP 808
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
+ N P + + E + +K LV D + + ++ R GI V+ V+D
Sbjct: 809 TEKENSPGT-TLEMESLKLLVADESAMHRQSVQHFADRWGITVDQVTDPQ---------- 857
Query: 783 KIINMILVEQEVWEKDTSVSTLF--VNNLRKLGCGFQSKLFL---LANSISSSRANTSTD 837
N + + + T L VN L G L LA + + + A +
Sbjct: 858 ---NALSALRAAAAEGTPYHALLASVNLLEGEGSTLLQALNQEPNLATTRTIALAQFNQR 914
Query: 838 GVS-------IPSVIMKPLRSSMLAASLQRAM----GVGNKGNIRNWELPSMSLRHL--- 883
++ + + I+KPLR S ASLQ+ + + ++ E S S L
Sbjct: 915 AIAEALAPHWVSAYIIKPLRGSQFVASLQQVLEPKVALSDRPRGSQGEPFSGSAFSLAPP 974
Query: 884 -LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
+ KILI +D+ +N +V L G CV G +A + L +D FMD QMP
Sbjct: 975 PVCPLKILIAEDHEINQQVIVFQLNTLGYHADCVNNGLEALDRLA-CEDYDLVFMDCQMP 1033
Query: 943 EMDGYEM 949
+ DGYE+
Sbjct: 1034 QKDGYEV 1040
>gi|344941765|ref|ZP_08781053.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
gi|344262957|gb|EGW23228.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
Length = 1247
Score = 233 bits (594), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 164/519 (31%), Positives = 263/519 (50%), Gaps = 63/519 (12%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
K++FLA +SHEIRTPMNGVLGMLD+L DT+L Q D + A S ++L+++IN++LD +
Sbjct: 533 KTEFLANMSHEIRTPMNGVLGMLDLLQDTQLSREQWDLIDIAANSAESLLTIINDILDFS 592
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+GK+ELE + FNL ++++V +L S ++ KG+EL ++ +P GDP R RQ+
Sbjct: 593 KLEAGKIELEQIEFNLPDLVEEVCTLLSSRAHSKGLELNCFLPTDLPLRWQGDPTRIRQV 652
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+TNL+GN++KFTE+G + VTV + K
Sbjct: 653 LTNLIGNAVKFTEQGEVSVTVRVS-----------------------------------K 677
Query: 617 TFNQDGSTSP--FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674
+ D +++P F + + L L V DTG GI EAQ+R+F F Q S SR +GGT
Sbjct: 678 KDDTDAASAPGRFAADTPSLTILRFEVVDTGIGITAEAQARLFQAFSQADSSTSRRYGGT 737
Query: 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS 734
G+GLSISK LV M G IG S G+ F FT ++ NE + Q N
Sbjct: 738 GLGLSISKDLVMLMNGNIGVESALGQGANFWFTLPL---AAVDNEAPAPQAN-------- 786
Query: 735 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---SKIINMILVE 791
F + L+VD + +++ G + + L ++ + ++ +++L +
Sbjct: 787 -FCDKRVLIVDDNATNRMILTHYLSNWGFTLSEADNGPAALDELEAAVLRNEPYDLLLSD 845
Query: 792 QEVWEKDT-SVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLR 850
++ D +++ + N ++ L + SI S ++ ++KP+R
Sbjct: 846 MQMPGMDGFALARAIIEN---PAIADTPRILLSSGSIGSQVERLAS---GFTQSLLKPVR 899
Query: 851 SSMLAASLQRAMGV-GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRY 909
S L ++ A+ + G K E + L + +++L+V+DN VN KV + L ++
Sbjct: 900 QSQLFDAVIDALQLPGQKNAPVEKEKKEVLLDY--SSKRVLVVEDNKVNQKVILSQLAKF 957
Query: 910 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G+ A + L +D FMD QMP MDGYE
Sbjct: 958 QLKPDLANNGQVALDQL-ERQAYDLVFMDCQMPIMDGYE 995
>gi|255523785|ref|ZP_05390750.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
P7]
gi|255512488|gb|EET88763.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
P7]
Length = 945
Score = 233 bits (593), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 172/557 (30%), Positives = 275/557 (49%), Gaps = 97/557 (17%)
Query: 409 TVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD 468
T R+A+ E + + K++AEAA+ AKS+FLA +SHEIRTPMNG+ G L++L T L
Sbjct: 300 TEQRLAEKE-----LYKAKEQAEAANTAKSRFLANMSHEIRTPMNGIFGFLELLQATNLS 354
Query: 469 VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQ 528
+ Q++++R A+++ + L+ +IN++LD +K+E+ KL +E + FNLR ++D +SL + K+
Sbjct: 355 LEQKEFIREAKSASEILLHIINDILDFSKIEAKKLTMEKIKFNLRNSIEDAVSLLAPKAA 414
Query: 529 DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 588
+K +EL I+ VPE +IGDP R RQ++ NL+ N++KFT KG I V VD ++
Sbjct: 415 EKNLELYTMINPNVPEEVIGDPSRLRQVLNNLISNAVKFTSKGEISVK-------VDCLK 467
Query: 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 648
E +++ F F V+DTG GI
Sbjct: 468 EENKIA--------------------FLNF---------------------EVKDTGIGI 486
Query: 649 PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708
E + IF F Q S +R +GGTG+GL+IS LV M G+I SI GSTF F
Sbjct: 487 RKEHINTIFKSFSQADASTTRKYGGTGLGLAISSELVKMMGGKIQVESIVGEGSTFKFDV 546
Query: 709 VFG--NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 766
G+S Q+ + + + +GM LVVD K+ ++Q G+ V
Sbjct: 547 KLKIVKGASV------QKFDFE------KLRGMNVLVVDDNDNNRKIVVSYLQETGLMVF 594
Query: 767 VVSDQLQCLSQIAS--------GSKIINMILVEQEVWEKDTSVSTL-FVNNLRKLGCGFQ 817
+ ++ I S + II+ + + +E T++ T+ F ++
Sbjct: 595 EAKNAAAAITTIISKANTKNKINTAIIDYQMTDMSAYELATTLKTMPFAKDV-------- 646
Query: 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 877
KL LLA S++ S+ + KP++ L + +G+ + + E
Sbjct: 647 -KLILLA-SVNQKGETKSSKEYGFSCYLGKPVKRDDLLNCIAMVLGLKKE----DEEKCE 700
Query: 878 MSLRHLL------LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 931
+ +H++ L KIL+V+DN +N K+ LK + G +A + +
Sbjct: 701 VVTKHIVREVKNELKPKILLVEDNVMNRKIVINILKLHDMTCDVAVNGSEALKAV-SEKD 759
Query: 932 FDACFMDIQMPEMDGYE 948
+D FMD QMP MDGYE
Sbjct: 760 YDVVFMDCQMPVMDGYE 776
>gi|17231253|ref|NP_487801.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17132895|dbj|BAB75460.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 1550
Score = 233 bits (593), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 189/639 (29%), Positives = 297/639 (46%), Gaps = 113/639 (17%)
Query: 357 LWLVSTLNFGDPFRKH-EMRCRFKQKAPW--PLLAISTSIGILVI---------ASLVGH 404
L ++ L+ G+ + H E+ +F KA P+L G+L++ S H
Sbjct: 789 LEAIANLDLGEIQQSHLELLRKFGVKANLVIPILVKDELCGLLIVHQCATSRQWTSFETH 848
Query: 405 IFQATVNRIA---------KVEEDYHGMMEL-KKKAEAADVAKSQFLATVSHEIRTPMNG 454
+ + +++ +VE +E+ + +AE A AKS FLA +SHEIRTPMN
Sbjct: 849 LLRQIADQVGIAVAQAQLLEVETRQRQELEVARSQAELASHAKSAFLANMSHEIRTPMNA 908
Query: 455 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514
VLGM ++++T L+ Q+D++ T + SG AL++LINE+LD +K+E+G++ LE ++FNL
Sbjct: 909 VLGMTGLMLETLLNQEQRDFMETIRISGDALLTLINEILDLSKLEAGEMALENLNFNLST 968
Query: 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 574
+++VL L + ++ KG+E+A I VP L GD R RQI+ NL+GN+IKFT G
Sbjct: 969 CVEEVLDLLAPQAHSKGLEIAALIYRHVPIQLQGDASRLRQILMNLIGNAIKFTSFG--- 1025
Query: 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 634
EVV +E+ +E P H
Sbjct: 1026 -------EVVMRVELRSE----------TPTTAIIH------------------------ 1044
Query: 635 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 694
+V D+G GI LE Q ++FTPF QV S +R +GGTG+GL+I K LV M GEIG
Sbjct: 1045 ----FAVTDSGLGITLEDQHKLFTPFTQVDASTTRKYGGTGLGLAICKQLVTLMGGEIGV 1100
Query: 695 VSIPNIGSTFTFTAVFGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKV 753
S GS F F F S + +NN+ + LVVD K+
Sbjct: 1101 ESQLGKGSKFWFEIPFAKQLQPVSFVEDCGLLNNR-----------RLLVVDDHATNRKI 1149
Query: 754 SRYHIQRLGIQVEVVSDQLQCLSQIASG---SKIINMILVEQEVWEKDTSVSTLFVNNLR 810
+ + R G+QV+ + LS I +K ++IL++ ++ E D + +
Sbjct: 1150 IYHQVSRWGMQVDQADRAVAALSMIVEACQQNKPYDVILIDMQMPEMD----GMALGKQI 1205
Query: 811 KLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV-----G 865
K ++ S + + + ++KP++SS L ++ +
Sbjct: 1206 KANSAIPPTPLIMLTSTNQRDEVQQAIKIGFAAYLVKPVKSSRLLDTIMSVLKTPSQLEA 1265
Query: 866 NKGNIRNWELPSMSLRH--------------LLLGRKILIVDDNNVNLKVAAAGLKRYGA 911
K +++ EL +L H + +IL+ +DN VN KVA L+ G
Sbjct: 1266 EKLEVKSQELEKNNLDHSRNHNFTATQAQNSVSTKTRILLAEDNLVNQKVALKQLQSLGY 1325
Query: 912 AVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGYE 948
GK+ +LL +P +D MD QMP +DG E
Sbjct: 1326 TADVAANGKEVLQLLKQIP---YDLILMDCQMPILDGLE 1361
>gi|83313245|ref|YP_423509.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
gi|82948086|dbj|BAE52950.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 1258
Score = 232 bits (592), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 160/525 (30%), Positives = 258/525 (49%), Gaps = 73/525 (13%)
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
+AEAA AK+ FLA +SHEIRTPMN ++GM + + TEL+ Q+DYVR Q SG+ L+ +
Sbjct: 605 RAEAASQAKADFLANMSHEIRTPMNAIIGMSHLALKTELNPRQRDYVRKIQQSGQHLLGI 664
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
IN++LD +K+E+GKL +E + +L +LD+V +L S K+ KG+EL ++ VP ++G
Sbjct: 665 INDILDFSKIEAGKLSVEKTAVHLDTVLDNVANLISEKTIAKGLELIFDVASDVPNDMVG 724
Query: 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
DP R QI+ N N++KFTE G I V V L E++ +++ + E+ +
Sbjct: 725 DPLRLGQILINYANNAVKFTETGEIVVAVRLAEDLGEAVRLRFEVRDT------------ 772
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
G G+ E R+F F Q S +
Sbjct: 773 ------------------------------------GIGLSAEQMGRLFQSFQQADTSTT 796
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 728
R +GGTG+GL+IS+ L M GE+G S P GSTF FTA G G + + +
Sbjct: 797 RKYGGTGLGLAISRKLAELMDGEVGVESQPGRGSTFWFTACLGKG------RPRRALVPK 850
Query: 729 PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--ASGSKIIN 786
P+ +G LVVD V + + +VE V ++++ +G+K
Sbjct: 851 PD-----LRGRHMLVVDDNENARAVLVDMLTSMSFRVEAVESGAAAVARVREVAGAKPFE 905
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL-FLLANSISSSRANTSTDGVSIPSVI 845
++ ++ ++ D + + LG G S ++ + + + I V+
Sbjct: 906 VVFLDWQMPGMDGIETARAI-----LGLGLTSPPHMIMVTAHGREEVMKAAESAGIEDVL 960
Query: 846 MKPLRSSMLAASLQRAMGVGNKGN----IRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+KP+ S++ ++ RA+G +G+ E+ +L L G ++L+ +DN+ N +V
Sbjct: 961 IKPVNPSIMFDAVMRALGAALEGDPEEAAAGREVSDDALAS-LRGLRVLLAEDNDFNQQV 1019
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L G V E GK A +++M +D MD+QMP MDG
Sbjct: 1020 ATELLADGGVEVEVAENGKIAVDMVM-AAPYDMVLMDMQMPVMDG 1063
>gi|443475295|ref|ZP_21065249.1| Hpt sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
gi|443019885|gb|ELS33914.1| Hpt sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
Length = 850
Score = 232 bits (591), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 169/531 (31%), Positives = 268/531 (50%), Gaps = 80/531 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AEA++ AKS FLAT+SHEIRTPMN V+GM +L++T+LD QQD+ T SG+ L+
Sbjct: 178 KQIAEASNQAKSSFLATMSHEIRTPMNAVIGMTGLLLETDLDPRQQDFANTIHNSGEHLL 237
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+LINE+LD +K+E+ +++LE + F L + +++V + +G + KG++LA++I VP+ L
Sbjct: 238 NLINEILDFSKLEAREMQLEELDFELESSIEEVADILAGSAHSKGLDLALFIHPDVPKYL 297
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD GR RQ++ NL N+IKFT +G + + V + +E
Sbjct: 298 KGDIGRLRQVLLNLTNNAIKFTRQGEVTIEVAIAKE------------------------ 333
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D +T ++L SV DTG GI LEAQS++F PF+QV S
Sbjct: 334 --------------DLTT----------VSLSFSVIDTGIGISLEAQSKLFEPFIQVDAS 369
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I K LV M G I S N GSTF FT F S +
Sbjct: 370 TTRQYGGTGLGLAICKQLVRLMGGSIYVESEENKGSTFWFTVPFQKQS---------EEG 420
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV---SDQLQCLSQIASGSK 783
+ P +VS+ Q ++ LVVD + + ++ +QV+++ ++ + L + + +
Sbjct: 421 SYPLAVSA-LQDLRVLVVDDSVTNCNILYHQLKSWKMQVDILIQSTEAIDALHRAIAIGQ 479
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL------LANSISSSRANTSTD 837
L++ ++ + D +LG +S L + S+ + A +
Sbjct: 480 PYQFALLDMQMPDLDG----------EQLGTQIKSSPILRDTHLIMLTSLDQNGAASRML 529
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR-KILIVDDNN 896
+ + KP+R L SL + G + + M+ L + KIL+V+D+
Sbjct: 530 EIGFADYLRKPVRKLRLLNSLINTIS-GKSAKLIDQPPEFMAEEVKLPSQLKILLVEDSP 588
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
+N KV L G V V G++A ++L + MD QMP MDGY
Sbjct: 589 INQKVTINQLHNLGYRVDVVANGQEALDIL-DKISYSIILMDCQMPVMDGY 638
>gi|23016213|ref|ZP_00055971.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 788
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 163/530 (30%), Positives = 260/530 (49%), Gaps = 72/530 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AE A AKS FLA +SHEIRTPMN ++GM + + T+LD Q++Y+ SG+ L+
Sbjct: 47 KEIAEEATKAKSDFLANMSHEIRTPMNAIIGMSHLALQTKLDKKQRNYIEKVHRSGENLL 106
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN++LD +K+E+GK+ +E++ F L ++D++ +L K++D+G+EL ++ +P L
Sbjct: 107 GIINDILDFSKIEAGKMTMESIDFRLEDVMDNLANLVGLKAEDRGLELLFNVAPDIPSAL 166
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R QI+ NL N++KFTEKG I V LVE D E+
Sbjct: 167 IGDPLRLGQILINLGNNAVKFTEKGEIIVGAELVERSEDQAEL----------------- 209
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
H W V D+G G+ E ++F F Q S
Sbjct: 210 ---HFW----------------------------VRDSGIGMTPEQCGKMFKSFSQADTS 238
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+ISK LV M G I S GSTF F G S H +
Sbjct: 239 TTRKYGGTGLGLAISKTLVELMDGRIWVESEAGKGSTFHFHVRVGVQS-----HPPLRRV 293
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK--- 783
P+ E G++ LVVD ++ + G++V+ D Q L +A+ +
Sbjct: 294 FSPD----ELLGLRVLVVDDNAAAREILSAMAKGFGLEVDSAWDGTQALEMVAAAERKDL 349
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK----LFLLANSISSSRANTSTDGV 839
++IL++ ++ D V ++KL G ++ + + A + N GV
Sbjct: 350 PYDLILMDWKMPIMDG------VETVQKLQHGDHARIPAVIMVTAYGREEAATNAEERGV 403
Query: 840 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNNV 897
+ +V+ KP+ ++ L ++ +G G + + + L G ++L+V+DN +
Sbjct: 404 VMKTVLTKPVTAASLLEAIGETLGKGVVAEHQGQDKAESYKETMKALEGCRVLLVEDNEM 463
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
N ++A L + G VV G+ A ++L ++FD MD QMP MDGY
Sbjct: 464 NQELATELLSQAGMEVVVAVHGQDALDILARDNRFDGILMDCQMPVMDGY 513
Score = 40.8 bits (94), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ----FDACFMDI 939
LLG ++L+VDDN ++ +A K +G V G +A E++ + +D MD
Sbjct: 299 LLGLRVLVVDDNAAAREILSAMAKGFGLEVDSAWDGTQALEMVAAAERKDLPYDLILMDW 358
Query: 940 QMPEMDGYE 948
+MP MDG E
Sbjct: 359 KMPIMDGVE 367
>gi|427715757|ref|YP_007063751.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 7507]
gi|427348193|gb|AFY30917.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 7507]
Length = 1536
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 171/534 (32%), Positives = 267/534 (50%), Gaps = 78/534 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+++AE+A +KS FLA +SHEIRTPMN VLGM ++++T L+ QQD++ T + SG AL+
Sbjct: 882 RRQAESASQSKSAFLANMSHEIRTPMNAVLGMTGLMLETPLNREQQDFMETIRISGDALL 941
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+LINE+LD +K+E+G++ LE ++F+L +++VL L + ++ K +ELA I VP L
Sbjct: 942 TLINEILDLSKLEAGEMALETLNFDLSTCVEEVLELLAPQAHSKELELAALIYPHVPTHL 1001
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD R RQI+ NL+GN+IKFT G EVV EV ++ S++
Sbjct: 1002 QGDASRLRQILMNLIGNAIKFTSVG----------EVVVRAEVRSQTSTT---------- 1041
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ + ++ DTG GI E Q ++FTPF QV S
Sbjct: 1042 ----------------------------VTIHFAITDTGLGITPEDQHQLFTPFTQVDAS 1073
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG-SSTSNEHNSQQM 725
+R +GGTG+GL+I K LV M GEIG S GS F F F S+ H+ Q+
Sbjct: 1074 TTRKYGGTGLGLAICKQLVTLMGGEIGVESQLGEGSKFWFDVPFTKQLQPISSIHDRIQL 1133
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---S 782
N+ + LVVD K+ + R G+QV+ LS I +
Sbjct: 1134 TNR-----------RLLVVDDNATNRKIIYHQATRWGMQVDKAESAATALSAIYAAYEQK 1182
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
+I ++ILV+ ++ E D + + K + ++ S + +
Sbjct: 1183 QIYDVILVDMQMPEID----GMKLGEQIKQDAAIANIPLIMLTSTNQRDEIQRALNIGFA 1238
Query: 843 SVIMKPLRSSMLAASLQRAMGVGNK---GNIR--NWE-LPSMSLRHLLLGRKILIVDDNN 896
+ ++KP++ S L ++ +G + G +R N E + S + + +IL+ +DN
Sbjct: 1239 AYLVKPVKPSRLLDTIMTILGSQRELTAGEVRVENPETVGSPTPDAIAPKIRILLAEDNL 1298
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGYE 948
VN KVA L+R G + G++ +LL +P +D MD QMP +DG E
Sbjct: 1299 VNQKVALKQLERLGYSADVAGNGREVLQLLEKIP---YDLILMDCQMPVLDGLE 1349
Score = 44.3 bits (103), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 875 LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ--- 931
+ S+ R L R++L+VDDN N K+ R+G V E A + ++
Sbjct: 1124 ISSIHDRIQLTNRRLLVVDDNATNRKIIYHQATRWGMQVDKAESAATALSAIYAAYEQKQ 1183
Query: 932 -FDACFMDIQMPEMDGYEM 949
+D +D+QMPE+DG ++
Sbjct: 1184 IYDVILVDMQMPEIDGMKL 1202
>gi|386826933|ref|ZP_10114040.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
gi|386427817|gb|EIJ41645.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
Length = 1636
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 163/520 (31%), Positives = 264/520 (50%), Gaps = 75/520 (14%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KS+FLA +SHEIRTPMN V+GM +L +T L+ Q+D+V T + S L+ LIN++LD +
Sbjct: 282 KSEFLANMSHEIRTPMNAVIGMAGLLRETHLNQQQRDFVETIRTSSDTLLCLINDILDFS 341
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS---DRVPETLIGDPGRF 553
K+++GKLELE F+LR ++ L L + ++ +K +EL + RVPE L GD R
Sbjct: 342 KIDAGKLELEENLFDLRECVESALDLVAPRAAEKNLELTAFFDHEMQRVPEYLCGDVTRL 401
Query: 554 RQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK 613
RQI+ NL+ N++KFTEKG + V + S P+ +
Sbjct: 402 RQILVNLLTNAVKFTEKGEVVVMI-----------------------SAQPLLEEKQ--- 435
Query: 614 GFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673
I L +V+DTG GIP + +R+F F QV S++R +GG
Sbjct: 436 ---------------------IELYFAVKDTGIGIPPDRINRLFQSFSQVDASMTRKYGG 474
Query: 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVS 733
+G+GL+ISK+L MKG I S GSTF FT G + + ++ S VS
Sbjct: 475 SGLGLAISKHLCELMKGRIWIDSELGKGSTFHFTITAQVGENPNIQNVS--------DVS 526
Query: 734 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQE 793
E +G + L++D ++ + Q+ G+ VE + L+++A +K ++++++ +
Sbjct: 527 VELEGKRLLIIDDNATNLRILKLQAQQWGMVVEEAFSGKEALARLAQPTK-FDLLILDMQ 585
Query: 794 VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 853
+ E D +RKL ++ ++ S+ A+ S S + + KP+++
Sbjct: 586 MPEMD---GITLAYEIRKL-YSIETLPIIMLTSLGRHHADISPHLFS--AYLTKPVKAKH 639
Query: 854 LAASLQ-----RAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKR 908
L ++ +A+ +I + +M+ +H L +IL+ +DN N KVA L R
Sbjct: 640 LLTVVKSIFNPKAVSADEVNHITVTD-QNMAKKHPL---RILLAEDNLTNQKVAIHLLHR 695
Query: 909 YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G + GK+A E + +D MD+QMPEMDG+E
Sbjct: 696 LGYSADIASNGKEAVE-AVARQMYDVILMDVQMPEMDGFE 734
Score = 41.2 bits (95), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF-DACFMDIQMPEMDG 946
KIL+VDD + + +A L+ G V+ G++A EL++ +Q + D+ MPEMDG
Sbjct: 1282 KILVVDDQPYDSLLVSAYLREEGYNVLVASTGQEALELVI--NQVPNLVLSDVMMPEMDG 1339
Query: 947 YEM 949
+E+
Sbjct: 1340 FEV 1342
>gi|291613628|ref|YP_003523785.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
ES-1]
gi|291583740|gb|ADE11398.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
ES-1]
Length = 908
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 170/558 (30%), Positives = 270/558 (48%), Gaps = 91/558 (16%)
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
E + AEAA K +FLA +SHE+RTPMN V+G+ + + TEL QQDY++ +S K+
Sbjct: 243 EARSHAEAASHIKDEFLANMSHELRTPMNAVIGLSHLCLQTELSDKQQDYLQKIHSSAKS 302
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L+ ++N++LD +K+E+GK+EL+ ++F L +L ++ ++ KS +K +EL + + VP
Sbjct: 303 LLGILNDILDVSKIEAGKMELDRIAFELDEVLGNLSTILWAKSHEKNLELLLETAPDVPS 362
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 604
L+GDP R Q++ NL GN++KFT KG EVV SI++E E
Sbjct: 363 VLVGDPLRLGQVLINLAGNAVKFTAKG----------EVVVSIDLEKE------------ 400
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
D + L +V+DTG G+ ++F PF Q
Sbjct: 401 --------------------------EGDQVVLRFAVKDTGIGMSQSEIDKLFRPFTQAD 434
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
SI+R GGTG+GL+ISK L+ M G+I S P GS F FTA F ++
Sbjct: 435 TSITRKFGGTGLGLTISKRLIEMMGGKIWVESTPGSGSKFIFTANF---------LKAKG 485
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS-- 782
N P + + F GM+ L VD + + +++ V V S+ LS + +
Sbjct: 486 RENAPRTEFAGFDGMRVLAVDDSENSLSILKNYLESFSFDVSVASNGRSALSTVRKANKD 545
Query: 783 -KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS----KLFLLA----NSISSSRAN 833
K ++ +++ ++ E D + R+L ++ K+ L+A N + R N
Sbjct: 546 GKPFSLAILDWKMPEMDG------LELARELHAMTEAENKPKILLIAGYGQNGTPALRNN 599
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL----GRKI 889
DG V+ KP + L ++ R G ++ + + LL+ G +
Sbjct: 600 KVVDG-----VLEKPFNQNKLFDAISRISG-PDQSATGKFRITGAQFNPLLVSQVRGAHL 653
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEM 949
L+V+DN +N +VA L+ +G V E G++A L QFD MD+QMP MDG
Sbjct: 654 LLVEDNEINQQVAQELLEGFGIKVAVAENGEEAIARL-NEEQFDGVLMDMQMPVMDGISA 712
Query: 950 L------PCFESFLLIAI 961
P F + +IA+
Sbjct: 713 TREIRKNPKFATLPIIAL 730
>gi|431929976|ref|YP_007243022.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
gi|431828279|gb|AGA89392.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
Length = 750
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 167/530 (31%), Positives = 261/530 (49%), Gaps = 72/530 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++AEAA AKS+F+A +SHEIRTPMNG+LGML+ML T L+ Q ++ + S + L+
Sbjct: 218 KEQAEAASQAKSRFVANMSHEIRTPMNGMLGMLEMLSQTRLNREQTAALQVVRRSAEGLL 277
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++I+++LD +K+ESGKLELE + F++R + ++V +LFS ++ KG+ELA + + P +
Sbjct: 278 TVIDDILDVSKIESGKLELEEIPFDVRGLTEEVATLFSASARSKGLELACFFAPSAPAHV 337
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R RQI+ NL+GN+IKFT +G + + V E E SS +
Sbjct: 338 CGDPTRLRQILNNLLGNAIKFTHEGEVALRVE-----------EAEASSPE--------- 377
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
A+ + L V DTG G+ E + +FTPF Q S
Sbjct: 378 -------------------------ANTVRLRFEVIDTGIGMSAEHMAHLFTPFHQADAS 412
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R GGTG+GL+ISK L M G+I S GS F F Q
Sbjct: 413 TTRRFGGTGLGLAISKNLARLMGGDIEVASGLGRGSRFALVVPF----------TRQGEV 462
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---SK 783
P V ++ G +ALVVD +V Y+++ G+ + + + L Q+ + +
Sbjct: 463 EHPVRV-ADLTGRRALVVDDNETNRRVVGYYLRNWGVVTQCAATAAEGLRQLRAAVDEGQ 521
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
++ +++ E+ + + V +R +++ LL +S D +
Sbjct: 522 PFDVAILDLEMPDAE---GFDLVRRIRTDSALAATRIMLL----NSGGKTGLQDDLGGAL 574
Query: 844 VIMKPLRSSMLAASLQRAM-----GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 898
V+ KP+R +L +L +A+ G + PS LL ++L+V+DN +N
Sbjct: 575 VLAKPIRQQLLRDALLQALSGVAHGSSTGAPAQRPGAPSAGHGAPLLRGRVLLVEDNPIN 634
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+VA L+R G E G + +DA MDIQMP+MDGYE
Sbjct: 635 QQVALGLLRRLGLTPDVAETGAQGIAQATSA-DYDAILMDIQMPDMDGYE 683
Score = 45.1 bits (105), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP----HQFDACFMDI 939
L GR+ L+VDDN N +V L+ +G C + L FD +D+
Sbjct: 471 LTGRRALVVDDNETNRRVVGYYLRNWGVVTQCAATAAEGLRQLRAAVDEGQPFDVAILDL 530
Query: 940 QMPEMDGYEML 950
+MP+ +G++++
Sbjct: 531 EMPDAEGFDLV 541
>gi|428303899|ref|YP_007140724.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
gi|428245434|gb|AFZ11214.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
Length = 1112
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 175/530 (33%), Positives = 265/530 (50%), Gaps = 70/530 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+ +A AA AK++FLAT+SHEIRTPMNGV+GM +L++T+L Q+D+V T + SG +L+
Sbjct: 574 RDQAIAATQAKAEFLATMSHEIRTPMNGVIGMTGLLLETDLTPQQRDFVETIRTSGDSLL 633
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K++SGKLELE F LR +++ L L + K+ KG+ELA I P+T+
Sbjct: 634 TIINDILDFSKIDSGKLELEKHPFELRIGIEEALDLVAHKAGSKGLELAYLIDSNTPQTI 693
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R RQI+ NL+ N+IKFTE G + ++V + + G V
Sbjct: 694 LGDITRLRQILVNLLSNAIKFTEVGEVVLSV------------------TAKQIPG-EVQ 734
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
C +D + +V+DTG GIP R+F F QV S
Sbjct: 735 HNC----------------------SDTYEIKFAVKDTGIGIPANRMDRLFQSFSQVDSS 772
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL IS+ L M G++ S PN GS F FT V + +S +
Sbjct: 773 TTRQYGGTGLGLVISQRLSQIMGGKMWVESQPNQGSIFYFTIVAQSIPCSS-------IL 825
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSK 783
+ P + + G + L+VD K+ Q G+ V+ + L+CLS+ +
Sbjct: 826 DVPTATT--LSGKRLLIVDDNATNRKILTLQAQSWGMLSNAVTGGNEALECLSR----GE 879
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
++ +++ ++ E D +RKL FQ ++ S+ SR + +
Sbjct: 880 QYDIAVLDMQMPEMD---GLTLAAEIRKLP-QFQHLPLVMLTSLGRSRIVEQGVKHNFAA 935
Query: 844 VIMKPLRSSMLAASLQRAMG---VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
+ KP++ L +A+ V K + L L R IL+ +DN VN K
Sbjct: 936 FLSKPIKQEQLYNVFLQALSDQLVTTKAPPPTSSAATTKLAESLPLR-ILLAEDNVVNQK 994
Query: 901 VAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGYE 948
VA LKR G V G +A E L +P +D MD+QMPEMDG E
Sbjct: 995 VAIQLLKRLGYRADVVGNGCEALEALCHVP---YDVVLMDMQMPEMDGIE 1041
>gi|218781753|ref|YP_002433071.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
gi|218763137|gb|ACL05603.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
Length = 949
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 175/538 (32%), Positives = 258/538 (47%), Gaps = 87/538 (16%)
Query: 426 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 485
L +A+ A++AKS+FLA +SHEIRTPMNGV+GM+ +L++TEL Q++Y T + S +L
Sbjct: 288 LAVQADLANMAKSEFLANMSHEIRTPMNGVVGMISLLLETELTREQKEYAETVRNSAHSL 347
Query: 486 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 545
+ +IN++LD +K+E+GKL+LEA+ F+LR L++ + + ++Q+KG+E I VP
Sbjct: 348 LEIINDILDFSKIEAGKLDLEAIDFDLRNTLEEASDIVALRAQEKGLEFVCIIDPDVPFR 407
Query: 546 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 605
L GDP R RQI+ NL N++KFT +G I + V L+++
Sbjct: 408 LKGDPVRLRQIVLNLANNAVKFTAQGSITIRVELLKQ----------------------- 444
Query: 606 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665
+ DL+ L SV DTG G+ Q +F F Q
Sbjct: 445 -------------------------APDLLALKFSVTDTGIGVAPSRQQSLFDAFTQAEA 479
Query: 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNE------ 719
S +R +GGTG+GL+ISK L MKG IG S GSTF FTA FG + E
Sbjct: 480 STTRNYGGTGLGLAISKKLAQMMKGRIGLESEEGKGSTFWFTAQFGKQAQAKEEISPYLA 539
Query: 720 -HNSQQMNNQPNSVSSEFQGMKALVV-DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQ 777
HN + + N+ ++ Q + L RP A+ +++L +L SQ
Sbjct: 540 VHNKRVLVVAENA-ATRLQLVNMLKSWSCRPEEAQGGGEALEKL---------RLAAASQ 589
Query: 778 IASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 837
I + L KD TL L K +L+ +
Sbjct: 590 DPFALAIADNKL-------KDMDGETL--GRLAKKDIKLADAHWLIMTFMGKRWDEFRMK 640
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGV-GNKGNIRN---WELPSMSLRHLLLGR---KIL 890
+ KP++ S L SL A+ G I +E+PS++ L R IL
Sbjct: 641 SAGFEGCLTKPVKQSALYNSLVSALNAEGGSHKISKPPRFEMPSLT----TLQRPDVSIL 696
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+ +DN VN KVA + LK+ G V G++A + L ++ FMD QMP+MDGYE
Sbjct: 697 VAEDNPVNQKVALSILKKLGLRAEAVANGREAVKALC-EKKYTMVFMDCQMPDMDGYE 753
>gi|91791902|ref|YP_561553.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
OS217]
gi|91713904|gb|ABE53830.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans OS217]
Length = 1233
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 174/584 (29%), Positives = 278/584 (47%), Gaps = 63/584 (10%)
Query: 363 LNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHG 422
L +P +E R + K+ L +S + A + T I + + +
Sbjct: 648 LYLSEPSGAYETEFRMRTKSGRYLWVLSRGRVVEFTADGMPSRMLGTHKDITRQKSNEVA 707
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
++E K AE A++ KS+FLA +SHEIRTPMN ++GML + T+L + QQDY+ A S
Sbjct: 708 LLEAKHDAELANMYKSEFLANMSHEIRTPMNAIIGMLQLASRTQLTLQQQDYLNKAGFSA 767
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
++L+ +IN++LD +K+E+GKLELE+V F+L +LD V+ + + +Q+KGVEL ++
Sbjct: 768 ESLLRIINDILDFSKIEAGKLELESVPFSLEKVLDHVIDMNALSAQEKGVELLLFSPLTT 827
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
TL GDP R Q++ NL+ N++KFT+ G IE+ E ++T
Sbjct: 828 GLTLKGDPLRLGQVLVNLLSNAVKFTQDGE--------------IELGCEDVGERDT--- 870
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
I+L V DTG GI E Q+ +F F Q
Sbjct: 871 -------------------------------QISLKFWVRDTGIGISREQQANLFDAFSQ 899
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
S +R +GGTG+GLSISK+LV M G + S P GSTF+FT F +
Sbjct: 900 ADGSTTRQYGGTGLGLSISKHLVSMMGGNLSVESEPQQGSTFSFTLSF---------DIA 950
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
+++ QP V + + +LVVD P ++ ++ V + + + ++
Sbjct: 951 KELPQQPLVVPKQLNNLTSLVVDDNPSALQIYSTLLRDFSFGVNTATGGAEAIERLLQQD 1010
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
+ ++ V + V+ + G + + ++ + S+ N D
Sbjct: 1011 IDLLLLDWMMPVVSGGMVIKA--VDEMIADGRLKKRPVIIIMTAYSTEPLNLELDKYEYQ 1068
Query: 843 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 902
+V+ KP ++S L + A K I+ E+ L IL+V+DN +N +VA
Sbjct: 1069 AVLQKPFKASSLFDEIIGAFAAPAK--IKQ-EIAEQVEPQPLQSGLILLVEDNFINQQVA 1125
Query: 903 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+ LK G VV + G+ A +L+ +FDA MDIQMP MDG
Sbjct: 1126 SELLKSAGYDVVIADNGQIALDLV-AKQEFDAVLMDIQMPVMDG 1168
>gi|119471909|ref|ZP_01614217.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Alteromonadales bacterium TW-7]
gi|119445282|gb|EAW26572.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Alteromonadales bacterium TW-7]
Length = 928
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 161/527 (30%), Positives = 256/527 (48%), Gaps = 84/527 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A+ KS FLA +SHE+RTP+NGV+G L T L+ Q+DY+ T S +L+
Sbjct: 280 KKEAQDANRVKSDFLAKMSHELRTPLNGVMGFTRQLYKTPLNKHQKDYLDTIMLSANSLM 339
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++I+++LD +K+E+G +ELE++ F LR +++V++L + + +K +EL++YI+ +VP+ L
Sbjct: 340 TIISDILDFSKLEAGAMELESIQFQLRDAVNEVMTLLAPSAHEKQLELSIYINPQVPDDL 399
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP RF+Q++ NL+ N+IKFTE+G I V +
Sbjct: 400 TGDPTRFKQVLINLLSNAIKFTEQGSIKVDI----------------------------- 430
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
++ +++ ++ ++VSV DTG GIP++ Q +FTPF Q S
Sbjct: 431 -------SYRLLDEESAS------------VLVSVTDTGVGIPMDKQDSLFTPFGQADSS 471
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R GGTG+GL I+K++V M G I S P G+ FTF +VF N N
Sbjct: 472 ITRKFGGTGLGLIITKHIVEAMNGRISLNSAPGNGTCFTFNSVF-------RLPNHVFTN 524
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC------LSQIAS 780
+ P S G + L ++P H L + E ++ C LS + +
Sbjct: 525 DLP---SKSLIGKRILYLEPH------EHTHHAVLSLLTEWQANVTPCFNEASFLSAVEN 575
Query: 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
++ L+ + +V +R L+L+ N++S + G
Sbjct: 576 TQTKFDICLIGHMASVDHMQLLKGYVKTVR----DSTDYLYLMLNTVSHNMREAFI-GSG 630
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNK-GNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 899
+ + KPL L L + + NI E LL K+L+VDDN+ NL
Sbjct: 631 ADACLSKPLNHRKLCEVLAAPYRLDHPVHNIEQSE-------QKLLPLKVLVVDDNDANL 683
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K+ L + G +A L H++D FMDIQMP MDG
Sbjct: 684 KLICTLLDEQVEVIDTAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDG 729
>gi|302875422|ref|YP_003844055.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
743B]
gi|307689020|ref|ZP_07631466.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
743B]
gi|302578279|gb|ADL52291.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
743B]
Length = 949
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 158/525 (30%), Positives = 260/525 (49%), Gaps = 64/525 (12%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++AEAA++AKS+FLA +S EIRTPMNG+ G L++L T L Q++++R A+++ + L+
Sbjct: 317 KEEAEAANIAKSKFLANMSREIRTPMNGIFGFLELLELTNLSSEQKEFIREAKSASEVLL 376
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN++LD +K+E+ KL +E +SFNLR ++D +SL + K+ +KG+EL V I + VPE +
Sbjct: 377 HIINDILDLSKIEARKLIMENISFNLRDAIEDTVSLLAPKAAEKGLELYVRIKEDVPEEV 436
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R RQI+ NL+ N++KFTEKG++ ++ +D +E + E++
Sbjct: 437 IGDPSRLRQILNNLIYNAVKFTEKGYVSIS-------MDYLEKDHEIA------------ 477
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
L+N VEDTG GI E ++F F Q S
Sbjct: 478 ---------------------------LVNF--EVEDTGIGIATEDIPKVFEAFNQADAS 508
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL IS L+ M G+I S GSTF F S +
Sbjct: 509 TTRKYGGTGLGLPISYELIKMMGGDIRVESKLGEGSTFKFNVNLKIAKRASEQR------ 562
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+ + +G ++VD + + + Q G+ + + ++ I S + N
Sbjct: 563 ----CLFDKLKGKNIIIVDGNENNINIIKSNFQGTGVNIFEAKNAGNAINIIISNANTEN 618
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
I + ++ ++ + + KL LL N +N + + + S +
Sbjct: 619 RIDIAIIDYQMSDMTGYELATTIKTIPFAKEIKLILLINLSQKGESNVAQENGFLSS-LF 677
Query: 847 KPLRSSMLAASLQRAMGVGNKGNIRNWELP---SMSLRHLLLGRKILIVDDNNVNLKVAA 903
KP+R L + + G+ K + N ++ ++S L KIL+V+DN +N K+
Sbjct: 678 KPIRRKDLLNCISKIFGL-QKEDEENRKIEIKDAISETKNRLIPKILLVEDNEINRKIFI 736
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+ +K G +A + + +D FMD QMP MDGYE
Sbjct: 737 SMIKSRNFTCDVAVDGSEALKAV-EKKDYDIIFMDCQMPTMDGYE 780
>gi|392536913|ref|ZP_10284050.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas marina
mano4]
Length = 928
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 161/527 (30%), Positives = 256/527 (48%), Gaps = 84/527 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A+ KS FLA +SHE+RTP+NGV+G L T L+ Q+DY+ T S +L+
Sbjct: 280 KKEAQDANRVKSDFLAKMSHELRTPLNGVMGFTRQLYKTPLNKHQKDYLDTIMLSANSLM 339
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++I+++LD +K+E+G +ELE++ F LR +++V++L + + +K +EL++YI+ +VP+ L
Sbjct: 340 TIISDILDFSKLEAGAMELESIQFQLRDAVNEVMTLLAPSAHEKQLELSIYINPQVPDDL 399
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP RF+Q++ NL+ N+IKFTE+G I V +
Sbjct: 400 TGDPTRFKQVLINLLSNAIKFTEQGSIKVDI----------------------------- 430
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
++ +++ ++ ++VSV DTG GIP++ Q +FTPF Q S
Sbjct: 431 -------SYRLLDEESAS------------VLVSVTDTGVGIPMDKQDSLFTPFGQADSS 471
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R GGTG+GL I+K++V M G I S P G+ FTF +VF N N
Sbjct: 472 ITRKFGGTGLGLIITKHIVEAMNGRISLNSAPGNGTCFTFNSVF-------RLPNHVFTN 524
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC------LSQIAS 780
+ P S G + L ++P H L + E ++ C LS + +
Sbjct: 525 DLP---SKSLIGKRILYLEPH------EHTHHAVLSLLTEWQANVTPCFNEASFLSAVEN 575
Query: 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
++ L+ + +V +R L+L+ N++S + G
Sbjct: 576 TQTKFDICLIGHMASVDHMQLLKGYVKTVR----DSTDYLYLMLNTVSHNMREAFI-GSG 630
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNK-GNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 899
+ + KPL L L + + NI E LL K+L+VDDN+ NL
Sbjct: 631 ADACLSKPLNHRKLCEVLAAPYRLDHPVHNIEQSE-------QKLLPLKVLVVDDNDANL 683
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K+ L + G +A L H++D FMDIQMP MDG
Sbjct: 684 KLICTLLDEQVEVIDTAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDG 729
>gi|359451557|ref|ZP_09240958.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. BSi20480]
gi|358042776|dbj|GAA77207.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. BSi20480]
Length = 813
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 161/527 (30%), Positives = 256/527 (48%), Gaps = 84/527 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A+ KS FLA +SHE+RTP+NGV+G L T L+ Q+DY+ T S +L+
Sbjct: 280 KKEAQDANRVKSDFLAKMSHELRTPLNGVMGFTRQLYKTPLNKHQKDYLDTIMLSANSLM 339
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++I+++LD +K+E+G +ELE++ F LR +++V++L + + +K +EL++YI+ +VP+ L
Sbjct: 340 TIISDILDFSKLEAGAMELESIQFQLRDAVNEVMTLLAPSAHEKQLELSIYINPQVPDDL 399
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP RF+Q++ NL+ N+IKFTE+G I V +
Sbjct: 400 TGDPTRFKQVLINLLSNAIKFTEQGSIKVDI----------------------------- 430
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
++ +++ ++ ++VSV DTG GIP++ Q +FTPF Q S
Sbjct: 431 -------SYRLLDEESAS------------VLVSVTDTGVGIPMDKQDSLFTPFGQADSS 471
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R GGTG+GL I+K++V M G I S P G+ FTF +VF N N
Sbjct: 472 ITRKFGGTGLGLIITKHIVEAMNGRISLNSAPGNGTCFTFNSVF-------RLPNHVFTN 524
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC------LSQIAS 780
+ P S G + L ++P H L + E ++ C LS + +
Sbjct: 525 DLP---SKSLIGKRILYLEPH------EHTHHAVLSLLTEWQANVTPCFNEASFLSAVEN 575
Query: 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
++ L+ + +V +R L+L+ N++S + G
Sbjct: 576 TQTKFDICLIGHMASVDHMQLLKGYVKTVR----DSTDYLYLMLNTVSHNMREAFI-GSG 630
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNK-GNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 899
+ + KPL L L + + NI E LL K+L+VDDN+ NL
Sbjct: 631 ADACLSKPLNHRKLCEVLAAPYRLDHPVHNIEQSE-------QKLLPLKVLVVDDNDANL 683
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K+ L + G +A L H++D FMDIQMP MDG
Sbjct: 684 KLICTLLDEQVEVIDTAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDG 729
>gi|374311111|ref|YP_005057541.1| multi-sensor hybrid histidine kinase [Granulicella mallensis
MP5ACTX8]
gi|358753121|gb|AEU36511.1| multi-sensor hybrid histidine kinase [Granulicella mallensis
MP5ACTX8]
Length = 931
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 174/575 (30%), Positives = 291/575 (50%), Gaps = 87/575 (15%)
Query: 393 IGILVIASLVGHIFQATVNRIAKVEEDYHGMMELK-------KKAEAADVAKSQFLATVS 445
+GI+++ S++ + ++ E+ Y M+E + + AEA+ AKS+FLA +S
Sbjct: 236 LGIVILTSVLDRRYSLQAVQLELSEQRYR-MIEAEAAGRERVRAAEASSQAKSEFLANMS 294
Query: 446 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505
HEIRTP+NG++GM D+ ++TEL Q+DY+ T + SG AL+++IN++LD +K+E+GK+EL
Sbjct: 295 HEIRTPLNGIIGMTDLALETELTQEQRDYLETVKLSGDALLNVINDILDFSKIEAGKIEL 354
Query: 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 565
E + FNL ++ L + ++ +KG+EL +S + E + GDPGR RQI+ N++GN+I
Sbjct: 355 EEIDFNLCNCIEGTLKTLALRADEKGLELLCDVSPHIAEVVSGDPGRLRQILLNVIGNAI 414
Query: 566 KFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 625
KFT KG I S++V+++L K +
Sbjct: 415 KFTSKGEI------------SLKVKSDLIEEKKS-------------------------- 436
Query: 626 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 685
+++ I++ DTG GI E + IF F Q S +R GGTG+GL+IS+ LV
Sbjct: 437 --------ILHFIIT--DTGIGIAPEKLTTIFDSFNQADTSTTREFGGTGLGLTISRCLV 486
Query: 686 GRMKGEIGFVSIPNIGSTFTFTAVFGN-GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVV 744
M G++ S +GS F FT + +H Q G+K L+V
Sbjct: 487 EMMGGKLWVESEVGVGSQFHFTIPMKYVDTPIEVDHIVQD---------KALNGVKVLIV 537
Query: 745 DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI---INMILVEQEVWEKDTSV 801
D ++ + R G+ VVS + L+++ + + +++L + ++ D
Sbjct: 538 DDNRTNRRILEGLLTRWGMVPTVVSGGEEALAKLHAAVQSGVPYDLVLTDMQMPNMD--- 594
Query: 802 STLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG-VSIPSVIMKPLRSSMLAASLQR 860
V N+++ + + +L + S R +T+ + I + ++KP+R L ++ R
Sbjct: 595 GFGLVENIKQKADISTATIMMLTS--GSKRGDTARCAELGIAAYLLKPVRQVELRQAILR 652
Query: 861 AMGV----GNKGNIRNWELPSMSLRHLLLGRK---ILIVDDNNVNLKVAAAGLKRYGAAV 913
+ G +GN+ + +LR L K IL+ +DN +N K+A L++ G V
Sbjct: 653 VLQAKEQHGEEGNM----VTQSTLREELSSAKVLNILLAEDNAINQKLAKRLLEKRGHKV 708
Query: 914 VCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
E GK+A L FD MD+QMPEMDG E
Sbjct: 709 SVAENGKEALAAL-EKSSFDLVLMDVQMPEMDGLE 742
Score = 46.6 bits (109), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ----FDACFMDIQM 941
G K+LIVDDN N ++ L R+G V G++A L Q +D D+QM
Sbjct: 531 GVKVLIVDDNRTNRRILEGLLTRWGMVPTVVSGGEEALAKLHAAVQSGVPYDLVLTDMQM 590
Query: 942 PEMDGYEML 950
P MDG+ ++
Sbjct: 591 PNMDGFGLV 599
>gi|374996937|ref|YP_004972436.1| signal transduction histidine kinase [Desulfosporosinus orientis
DSM 765]
gi|357215303|gb|AET69921.1| signal transduction histidine kinase [Desulfosporosinus orientis
DSM 765]
Length = 1261
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 157/547 (28%), Positives = 273/547 (49%), Gaps = 91/547 (16%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ EE+ ME AE A AKSQFLA +SHEIRTPMN ++G+ +L ++L +QQ+Y
Sbjct: 524 RTEEELKRAME---AAEEASQAKSQFLANMSHEIRTPMNAIMGLAHLLAQSDLKESQQNY 580
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
V + + K L+ +IN+VLD +K+E+GKLE+E + FNL +L++V +L+S + +KG++L
Sbjct: 581 VAKIEGASKTLLRIINDVLDFSKIEAGKLEIENIKFNLDKVLENVANLYSISAAEKGIDL 640
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ VP+ LIGDP R Q+++NL+ N+IKFT +G + V+V ++ E D +++
Sbjct: 641 NFDTGEGVPDVLIGDPLRLEQVLSNLITNAIKFTNRGEVNVSVKVLGENNDEVKL----- 695
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
+ V+D TG GI E
Sbjct: 696 -------SFTVSD------------------------------------TGIGITKEHIG 712
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
R+F F Q S++R +GGTG+GL+ISK LV M GEI S+ G++F F F
Sbjct: 713 RLFRAFTQADGSMTRKYGGTGLGLTISKQLVELMNGEISVESVYGEGTSFHFIVHF---- 768
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 774
H + + S + QG KAL++D + ++ ++V ++D +
Sbjct: 769 -----HKALDLKKPSCSNYPDLQGKKALIIDHNKTSLTILERMLRSFSLEVTALNDPFEA 823
Query: 775 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL-GCGFQSKLF----------LL 823
L ++ + ++++++ NL +L G F ++ +
Sbjct: 824 LERLH--RECFDLLVIDF---------------NLPELPGIEFYKRIIANPDIALPKTIF 866
Query: 824 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG--VGNKGNIRNWELPSMSLR 881
++I + + + ++KP+ S++ ++ A+ ++G + + E S R
Sbjct: 867 VSAIGRETHYHQVKQLGVRNFLVKPINQSLMFDAIMNALNGTALHQGEVIHDEANSRKHR 926
Query: 882 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 941
L +++L+V+DN++N VA L++ G V G++A + + ++F A MD+QM
Sbjct: 927 GELADKRVLVVEDNDINQLVAKDMLEQAGMLVSIANNGEEAIKYV-HANKFAAVLMDVQM 985
Query: 942 PEMDGYE 948
P MDGY+
Sbjct: 986 PVMDGYK 992
>gi|22298419|ref|NP_681666.1| two-component hybrid sensor and regulator [Thermosynechococcus
elongatus BP-1]
gi|22294598|dbj|BAC08428.1| two-component hybrid sensor and regulator [Thermosynechococcus
elongatus BP-1]
Length = 1035
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 170/560 (30%), Positives = 274/560 (48%), Gaps = 92/560 (16%)
Query: 418 EDYHGMME-------LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT 470
ED MM+ ++ AE A AKS+FLAT+SHEIRTPMN ++G+ +L+DT L+
Sbjct: 468 EDISQMMQQQELLEVARQAAEEASRAKSEFLATMSHEIRTPMNAIIGLTGLLLDTPLNPQ 527
Query: 471 QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDK 530
QQ++V T + SG AL+ +IN++LD +K+ESGKLELE+ FNLR +++VL L + ++ ++
Sbjct: 528 QQEFVNTIRLSGDALLGVINDILDFSKIESGKLELESYPFNLRTCVEEVLDLLASRAAER 587
Query: 531 GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 590
VELA +I VP +IGD GR RQ++ NL+GN+IKFT+KG+ VT+Y
Sbjct: 588 EVELAAHIDSGVPCAVIGDMGRLRQVLVNLIGNAIKFTQKGN--VTLY------------ 633
Query: 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 650
+ + +S Y +S+ + +++DTG GI
Sbjct: 634 --VKAKPMPMSQYEFMPSYYSY-------------------------LFAIQDTGIGISA 666
Query: 651 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIG----------------- 693
+R+F PF QV S +R +GGTG+GL I + LV RM G+I
Sbjct: 667 AGMNRLFKPFSQVDASTTRQYGGTGLGLVICQRLVERMGGQIWVESKKTGESLVVGGTPL 726
Query: 694 --FVSIP--NIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPI 749
+ SIP GS F FTA F + + E P + + + L+VD
Sbjct: 727 AVYESIPIAESGSVFYFTARFLLNPNPAPE---------PTDDTCYLENRRVLIVDDNAT 777
Query: 750 RAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNL 809
++ I++ +Q V L+ + +++ +++ ++ E D V
Sbjct: 778 NRQILALQIKKWKMQPLVAESGPSALA-LLQQQGWVDLAILDLQMPEMDG------VTLA 830
Query: 810 RKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGN 869
R++ + +L S+ ++ T ++ S+I KP++ S L +L ++ +
Sbjct: 831 RQIRAAYGELPLILLTSLGNTL--TESEKALFSSLISKPVKQSTLYNALN-SLFCEKQKT 887
Query: 870 IRNWELPSMSLRHL---LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 926
+ + S HL L +IL+ +DN VN VA L++ G G + + +
Sbjct: 888 VSPKPAAAPSFEHLKAELPPLRILVAEDNKVNQMVALRILEKLGYRGDIAANGLEVLDAV 947
Query: 927 MPPHQFDACFMDIQMPEMDG 946
+D MD+QMPEMDG
Sbjct: 948 Q-RQPYDVILMDMQMPEMDG 966
>gi|336126078|ref|YP_004578034.1| GacS/BarA family sensor protein [Vibrio anguillarum 775]
gi|335343795|gb|AEH35077.1| GacS/BarA family sensor protein [Vibrio anguillarum 775]
Length = 1320
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 165/527 (31%), Positives = 259/527 (49%), Gaps = 72/527 (13%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ E K+ A+A AK FLA +SHEIRTPMN +LGM + ++TEL+ TQQ Y+ S
Sbjct: 593 LREAKETADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTELNPTQQKYISRINESA 652
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
K L+ +IN++LD +K+E+GKL +E + F+L +LD++ +L S K+Q+K +E + I +
Sbjct: 653 KNLLGIINDILDFSKIEAGKLNVEHIDFSLDEVLDNLTTLISLKAQEKNIEFLLDIDPHI 712
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P L+GDP R Q++ NL GN++KFTE+G I V+ +V
Sbjct: 713 PVGLVGDPLRLGQVLVNLCGNAVKFTEQGEIIVSARVV---------------------- 750
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
G N + L +V DTG GI + +F+ F Q
Sbjct: 751 -----------GQNDAN---------------VTLKFTVSDTGIGIAESNVATLFSAFSQ 784
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
SI+R +GGTG+GLSISK LVG M G+I S GSTF FT G +
Sbjct: 785 ADNSITRQYGGTGLGLSISKQLVGLMGGDIQVHSEEGSGSTFEFTVECGLQEA------- 837
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
+M + +S+ G +ALVVD + + + + + VS+ + L +I +
Sbjct: 838 -KMRDIAKPLSA-LAGKRALVVDDNDSARNILMTLLNAMHFEAKSVSNGFEALDEIRNTH 895
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTSTDGV 839
+M+ ++ W + ++ LG +K FL+ IS N+
Sbjct: 896 --FDMLFID---WNMPGMNGIELLQRMKPLGVFDNTKRFLVTAYGREISLVGENSKL--- 947
Query: 840 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 899
+ ++I+KP+ S L ++ + G+ ++ E R +G+K+L+V+DN VN
Sbjct: 948 -VDALIVKPVNPSNLLDAIMDSYGIEQLR--QSHEYLDHDTRPTFIGQKVLLVEDNEVNQ 1004
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+VA L+ ++V G++A L FD MD+QMP MDG
Sbjct: 1005 EVAFGLLESTQLSIVLANNGQEALTTLQ-QEAFDLVLMDMQMPIMDG 1050
>gi|410672020|ref|YP_006924391.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
gi|409171148|gb|AFV25023.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
Length = 1771
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 178/566 (31%), Positives = 265/566 (46%), Gaps = 86/566 (15%)
Query: 399 ASLVGHIFQATVNRIAKVE-EDYHGMMELKKK--------AEAADVAKSQFLATVSHEIR 449
L+G + T ++A+ + + Y +E+K K AE A AKS+FLA +SHEIR
Sbjct: 1081 GGLIGMLVDITERKLAEEKLQTYADEVEIKNKELDRALARAEEATKAKSEFLANMSHEIR 1140
Query: 450 TPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVS 509
TPMNGV+GM +L+DTEL+ Q+ YV T QASG+AL+ +IN++LD +K+E+GKLELE +
Sbjct: 1141 TPMNGVIGMTGLLLDTELNEEQRHYVETVQASGEALLEIINDILDFSKIEAGKLELEMLD 1200
Query: 510 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE 569
F+L +LD ++ S K+ DKG+E VP + GDPGR +QI+TNL GN++KFT
Sbjct: 1201 FDLHNVLDSFAAMLSIKAHDKGLEFICAADPDVPAYISGDPGRLQQILTNLAGNAVKFTH 1260
Query: 570 KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKS 629
G + V V E TE
Sbjct: 1261 LGEVVV------RVTRESETNTE------------------------------------- 1277
Query: 630 SSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMK 689
+ L SV+DTG GI + +F F Q+ S +R + GTG+GL+ISK LV M
Sbjct: 1278 -----VLLRFSVKDTGIGIAEDKIGLLFNQFYQIDASTTRQYSGTGLGLAISKQLVKMMG 1332
Query: 690 GEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPI 749
G IG S GS F FT F + + + ++ Q + LVVD
Sbjct: 1333 GNIGVKSNEGKGSEFWFTLRFAKRPDGAIK----------KLLPADIQSARILVVDDNAT 1382
Query: 750 RAKVSRYHIQRLGIQ-VEVVS--DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFV 806
++ + G VE V LQ L + K ++ +++ + + L +
Sbjct: 1383 NREILISQLSSWGTNPVEAVDGPTALQTLYRAHEDHKPFHVTILDMHM----PGMDGLTL 1438
Query: 807 NNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN 866
+ K + ++ S+ + + + KPLR S L L + +
Sbjct: 1439 ARIIKSDDKIKDTFLIMLTSLGQWPVMEQLERSYFEAYLTKPLRQSELFDKLSSLLPIDR 1498
Query: 867 K-----GNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK 921
K N+ +P ++ +IL+ +DN VN KVA + LK+ G V G +
Sbjct: 1499 KIQEQSSNVNENVVPQRHTNNV----RILLAEDNIVNQKVAQSMLKKLGFRTDTVANGAE 1554
Query: 922 ATELL-MPPHQFDACFMDIQMPEMDG 946
A + L M P +D MD+QMPEMDG
Sbjct: 1555 ALKALEMIP--YDLVLMDVQMPEMDG 1578
>gi|20198952|gb|AAK54091.2|AF362372_1 histidine kinase DhkJ [Dictyostelium discoideum]
Length = 2062
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 177/532 (33%), Positives = 264/532 (49%), Gaps = 89/532 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AEAA AKS F+A +SHEIRTPMNG++GM D+ +DTEL Q++Y+ Q+S +L+
Sbjct: 1337 KETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQREYLSMVQSSAGSLL 1396
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+G+LEL+ F+LRA L D L S ++ K +EL I+ VP++L
Sbjct: 1397 TIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVPDSL 1456
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDPGR RQI+ NL+GN+IKFT +G + + V +VE LS +
Sbjct: 1457 IGDPGRLRQIVNNLVGNAIKFTSQGEVDLVV----------KVEKSLSCGE--------- 1497
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ L SV DTG GIP + IF F Q S
Sbjct: 1498 ----------------------------VVLKFSVIDTGIGIPKDKLHLIFEAFSQADGS 1529
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R +GGTG+GL+IS LV MKG++ VS GSTF FTA F TS
Sbjct: 1530 ITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGSTFEFTAQF----PTS--------- 1576
Query: 727 NQPNS--VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 784
PN ++ + + L+VD KV + + GI EV ++ + I +K
Sbjct: 1577 --PNQLPLTEKLNDVHTLIVDDNKSTLKVLKQILSEFGITSEVSNNTQDAFNMIVKATKT 1634
Query: 785 IN---MILVEQEVWEKDTSVSTLFV-NNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
I V+ ++ TS+ + V N+ C ++K+ +L S R +
Sbjct: 1635 TKPFEFIFVDAQLG---TSLIDMMVEKNMNH--C--KTKIIMLI-SGGGQRGYPDSSSNF 1686
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK----ILIVDDNN 896
I + KP+ S + L R +G R ++P + + L + IL+ +DN
Sbjct: 1687 ITGYLSKPVSPSEIFDILTR------QGITR--QIPKQLCKKIQLTSEIFGDILLAEDNA 1738
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VN ++A L+++G V E G +A +FD MD+QMP G+E
Sbjct: 1739 VNQRLAIRLLEKFGHRVQLAENGLQAVA-SSQLRKFDLILMDVQMPHCGGFE 1789
>gi|408418332|ref|YP_006759746.1| two component system sensor histidine kinase, barA-like
[Desulfobacula toluolica Tol2]
gi|405105545|emb|CCK79042.1| two component system sensor histidine kinase, barA-like
[Desulfobacula toluolica Tol2]
Length = 1144
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 163/525 (31%), Positives = 254/525 (48%), Gaps = 65/525 (12%)
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489
AE A +KS+FLA +SHEIRTPMN ++G+ + T++ Q DY+ +ASG +L+ +I
Sbjct: 387 AEEASRSKSEFLANMSHEIRTPMNAIIGLAHLAQKTDMTPKQNDYLNKIEASGLSLLGII 446
Query: 490 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 549
N++LD +K+E+ KL +E++ F+L+A+LD+V++L + K+++KG+EL +S VP L+GD
Sbjct: 447 NDILDFSKIEANKLSIESIEFDLQAVLDNVVNLINIKAEEKGLELLFDVSRDVPLGLVGD 506
Query: 550 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 609
P R QI+ NL GNSIKFT G I + V L+ E + + S S + +
Sbjct: 507 PLRLGQILINLAGNSIKFTLNGQILIKVALLNEDPEKARARLQFSVSDSGIG-------- 558
Query: 610 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669
QD + F+S F Q S +R
Sbjct: 559 --------MTQDQISKLFQS------------------------------FSQADGSTTR 580
Query: 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 729
+GGTG+GL+ISK LVG M GEI SI GSTFTFTA FG + Q P
Sbjct: 581 QYGGTGLGLTISKQLVGMMGGEISVKSIYGEGSTFTFTAEFGVQT---------QKPFIP 631
Query: 730 NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMIL 789
E GM+ L+VD ++ R ++ V V +S++ + SK L
Sbjct: 632 MISPGELHGMRVLIVDDNEKSREILRDLMKEFHFNVSEVPSGEAAISELKTSSKKAPYDL 691
Query: 790 VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL 849
V + W+ + +++ + L+ + + V + ++KP+
Sbjct: 692 VLMD-WQMNGMDGIETARRIKEDSGIAKIPAILMVTAFGREEVMSQAQTVGLDGFLIKPI 750
Query: 850 RSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL-----LLGRKILIVDDNNVNLKVAAA 904
S+L ++ G + N+ + +L S + + G +IL+V+DN +N +VA
Sbjct: 751 NRSLLFDAIMDLFG---RSNLPDQDLVSRETTRINGIDYVCGARILLVEDNKINQQVATE 807
Query: 905 GLKRYGAAVVCVERGKKATELLMPPHQ-FDACFMDIQMPEMDGYE 948
L+ G V G +A +L FD MDIQMP MDG+E
Sbjct: 808 LLESAGLIVTVAGDGLEALAVLKDTDSVFDGILMDIQMPNMDGFE 852
>gi|111226686|ref|XP_642053.2| histidine kinase [Dictyostelium discoideum AX4]
gi|122126078|sp|Q54YZ9.2|DHKJ_DICDI RecName: Full=Hybrid signal transduction histidine kinase J
gi|90970717|gb|EAL68114.2| histidine kinase [Dictyostelium discoideum AX4]
Length = 2062
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 177/532 (33%), Positives = 264/532 (49%), Gaps = 89/532 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AEAA AKS F+A +SHEIRTPMNG++GM D+ +DTEL Q++Y+ Q+S +L+
Sbjct: 1337 KETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQREYLSMVQSSAGSLL 1396
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+G+LEL+ F+LRA L D L S ++ K +EL I+ VP++L
Sbjct: 1397 TIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVPDSL 1456
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDPGR RQI+ NL+GN+IKFT +G + + V +VE LS +
Sbjct: 1457 IGDPGRLRQIVNNLVGNAIKFTSQGEVDLVV----------KVEKSLSCGE--------- 1497
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ L SV DTG GIP + IF F Q S
Sbjct: 1498 ----------------------------VVLKFSVIDTGIGIPKDKLHLIFEAFSQADGS 1529
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R +GGTG+GL+IS LV MKG++ VS GSTF FTA F TS
Sbjct: 1530 ITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGKGSTFEFTAQF----PTS--------- 1576
Query: 727 NQPNS--VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 784
PN ++ + + L+VD KV + + GI EV ++ + I +K
Sbjct: 1577 --PNQLPLTEKLNDVHTLIVDDNKSTLKVLKQILSEFGITSEVSNNTQDAFNMIVKATKT 1634
Query: 785 IN---MILVEQEVWEKDTSVSTLFV-NNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
I V+ ++ TS+ + V N+ C ++K+ +L S R +
Sbjct: 1635 TKPFEFIFVDAQLG---TSLIDMMVEKNMNH--C--KTKIIMLI-SGGGQRGYPDSSSNF 1686
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK----ILIVDDNN 896
I + KP+ S + L R +G R ++P + + L + IL+ +DN
Sbjct: 1687 ITGYLSKPVSPSEIFDILTR------QGITR--QIPKQLCKKIQLTSEIFGDILLAEDNA 1738
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VN ++A L+++G V E G +A +FD MD+QMP G+E
Sbjct: 1739 VNQRLAIRLLEKFGHRVQLAENGLQAVA-SSQLRKFDLILMDVQMPHCGGFE 1789
>gi|428225220|ref|YP_007109317.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
gi|427985121|gb|AFY66265.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Length = 2144
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 173/571 (30%), Positives = 270/571 (47%), Gaps = 78/571 (13%)
Query: 386 LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 445
L A++ +GI + + H+ + V + ++ + K++A+AA+ +KS FLA +S
Sbjct: 1439 LEAVAAQMGIALAQA---HLLEQAVEQREELVAKNAALETAKREADAANRSKSDFLAMMS 1495
Query: 446 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505
HEIRTPMN V+GM +L DTEL Q D+V T ++SG+ L++LIN++LD +K+ESGKL L
Sbjct: 1496 HEIRTPMNAVIGMASLLFDTELSPQQMDFVETIRSSGEVLLTLINDILDFSKIESGKLHL 1555
Query: 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 565
E FNLR ++D L L + ++ KG+EL +I+ P GD R RQ++ NL+ N+I
Sbjct: 1556 EEQRFNLRRCVEDALDLIATQATKKGLELICWIASGTPLHFQGDVTRLRQVLVNLLSNAI 1615
Query: 566 KFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 625
KFT+ G + V+V +
Sbjct: 1616 KFTQAGEVMVSV---------------------------------------------ESQ 1630
Query: 626 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 685
P S+ L +V DTG GI + +F PF QV S++R +GGTG+GLSISK L
Sbjct: 1631 P--CSNGGCYKLHFAVHDTGIGIHPDQLRHLFQPFSQVDSSMTRRYGGTGLGLSISKRLC 1688
Query: 686 GRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVD 745
M G + S +GSTF FT + S +E + ++V + +G + LV D
Sbjct: 1689 EMMGGRVWVESEVGVGSTFHFTVRLQSISEPMSE-------DVWSNVLPKMKGKRVLVAD 1741
Query: 746 PRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLF 805
+ IQ +QV+ + + ++ + S+ +IL Q ++
Sbjct: 1742 DNQTTRETIARQIQEWEMQVQTAASGAEAIAHLHQLSQYDLVILDHQMPSGNGFDIAA-- 1799
Query: 806 VNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865
+R+L G + +++ I S D + + +++ KPL+ S L + G
Sbjct: 1800 --QIRQLPGGQGLPIVVMSTGIESPSPEAIAD-IGVTALLAKPLKQSQFYDVLAQIFLTG 1856
Query: 866 NKGNIRNWELPSMSLRHLLLGRK--------ILIVDDNNVNLKVAAAGLKRYGAAVVCVE 917
LP S R L+ G + IL+V+D VN K+ L+R G
Sbjct: 1857 QVM------LPQRSAR-LMSGDRLSEQYPLHILLVEDVPVNQKLVLQMLQRLGYRADVAN 1909
Query: 918 RGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G +A L +D MD+QMPEMDG E
Sbjct: 1910 NGHEAIAALR-RQPYDVVLMDVQMPEMDGLE 1939
>gi|390949113|ref|YP_006412872.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390425682|gb|AFL72747.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 1524
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 162/534 (30%), Positives = 258/534 (48%), Gaps = 73/534 (13%)
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
E +AE A VAKS+FLA +SHEIRTPMNGV+GM +L++T+LD Q+ + +ASG++
Sbjct: 848 EQAARAEMASVAKSEFLANMSHEIRTPMNGVIGMTGLLLETDLDDEQRHFAEVVRASGES 907
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L+ LIN++LD +K+E+GKL+LE + F+L L+D + + ++Q+KG+E VP
Sbjct: 908 LLRLINDILDFSKIEAGKLDLEMLDFDLSLSLEDFATALALRAQEKGLEFLCDADPEVPA 967
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 604
L GDPGR RQI+TNL GN+IKFT G + + V ++EE +
Sbjct: 968 FLRGDPGRLRQILTNLAGNAIKFTPSGEVAIRVSVLEERTED------------------ 1009
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
+ L +V DTG GIP + +F F QV
Sbjct: 1010 ------------------------------VLLRFAVRDTGIGIPEDKLGLLFDKFSQVD 1039
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
S +R +GGTG+GL+ISK L M GE+G +S GS F FTA +++ +Q
Sbjct: 1040 ASTTRQYGGTGLGLAISKQLAALMDGEVGVISQAGKGSEFWFTARLAKQPESAH----RQ 1095
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG--- 781
+ S+ ++ G++ L+VD ++ + G++ D + L ++A
Sbjct: 1096 L-----SLPADLLGVRVLIVDDNATNREILMTRLTSWGMRPAEARDGPEALRRLAGALDE 1150
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
+ +++ ++ E D + +L +++ +L S+ +
Sbjct: 1151 PDPFRVAVIDMQMPEMDGETLGRAIGADSRLA---DTRMVML-TSLGMRGDARRFQELGF 1206
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR------KILIVDDN 895
+ I KP+R L A L + + + + + + L +L +IL+ +DN
Sbjct: 1207 AAYITKPIRHEELKAVLSLVLTARSPAEMVSRPIATRYLAREILNLFAGCKVRILLAEDN 1266
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFMDIQMPEMDGYE 948
N +VA LK+ G V G +A T L P +D MD+QMP MDG E
Sbjct: 1267 TTNQQVALGILKKMGLHADAVANGAEAVTALASIP--YDLVLMDVQMPVMDGLE 1318
>gi|398343867|ref|ZP_10528570.1| multi-sensor hybrid histidine kinase [Leptospira inadai serovar
Lyme str. 10]
Length = 856
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 164/519 (31%), Positives = 254/519 (48%), Gaps = 72/519 (13%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
AKS+FLA +SHEIRTPMNGV+GM ++L+D++L +++Y Q SG++L+S+IN++LD
Sbjct: 341 AKSEFLAMMSHEIRTPMNGVIGMTELLLDSDLTGEKREYAEIIQKSGESLLSIINDILDY 400
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+ESG L LE+ F++ ++ L LF + +KG++L +I VP+ +IGD R RQ
Sbjct: 401 SKIESGTLSLESKEFSILETAEETLDLFRSSAAEKGIDLICHIDPNVPDRIIGDKLRLRQ 460
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
++ NL GNS+KFTEKG +F++ E+S + ++ C
Sbjct: 461 VLINLFGNSLKFTEKGEVFLS--------------AEVSKKEKSI--------C------ 492
Query: 616 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
+ SV DTG GIP E Q ++F PF QV S +R +GGTG
Sbjct: 493 --------------------TIRFSVRDTGIGIPKEKQKQLFNPFYQVDTSSTRKYGGTG 532
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735
+GLSIS L+ M G I S N G+TF+F + G N+ P+
Sbjct: 533 LGLSISYRLIKMMGGRIWLESDINKGTTFSF-EIQAEGVEEKNQV-------VPDINYPG 584
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW 795
+ K L++D ++ + +Q LG+ S + + LS + G IL E +
Sbjct: 585 LENRKILIIDDNATNLRILSHQLQTLGLMTFSSSSKEEALSLLDLG------ILPELALL 638
Query: 796 EKDTSVST--LFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 853
+ + S S LR+ F L LL++SIS + D + + + KP++
Sbjct: 639 DYNLSGSNGVQIAQELRR--KNFLFPLILLSSSISDIKEKEIADQLFLRQ-LSKPVKKKE 695
Query: 854 LAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR----KILIVDDNNVNLKVAAAGLKRY 909
L + + G N + + LL +LI +DN +NL +A L++
Sbjct: 696 LEQLVTEILITGTDKGKANRSSSYLEKQKDLLQSTYPFDVLIAEDNEINLSLAKRILQKL 755
Query: 910 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G V GK+ L +FD MD+ MPEMDG +
Sbjct: 756 GYHPVVAMNGKQVLNRLREA-KFDVVLMDVHMPEMDGIQ 793
>gi|262195772|ref|YP_003266981.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
14365]
gi|262079119|gb|ACY15088.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
14365]
Length = 876
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 172/540 (31%), Positives = 272/540 (50%), Gaps = 85/540 (15%)
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489
AE A +AKS+FLA +SHEIRTPMNGVLGML +L+DT L Q+DY TA+AS L+ +I
Sbjct: 208 AEEASLAKSEFLANMSHEIRTPMNGVLGMLGLLLDTRLAAEQRDYAETARASAMTLLDII 267
Query: 490 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 549
N++LD +KVE+G++ E V+F+LR+ ++DV + + K +EL V P ++GD
Sbjct: 268 NDILDLSKVEAGQMAFEPVAFDLRSAIEDVFDQLAVLAAPKALELIVRYDPETPSRIVGD 327
Query: 550 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 609
GR RQ++ NL+GN+IKFT++GH+ +L ++ L
Sbjct: 328 AGRIRQVLVNLVGNAIKFTQRGHV------------------QLRATSEEL--------- 360
Query: 610 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669
DGS ++L +SVEDTG GI + +IF F Q+ S +R
Sbjct: 361 ----------DDGS-----------VDLKLSVEDTGPGISESEREQIFDKFRQLDVSSTR 399
Query: 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 729
HGGTG+GL+I + LV M GEIG S GSTF F S E S+ ++
Sbjct: 400 VHGGTGLGLAICRALVHGMGGEIGLESRRGEGSTFWF--------SIPVERASEDVSTIT 451
Query: 730 NSVSSEF---QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASG-S 782
+ + + M LVVD P++ + ++ + S + L + A+G
Sbjct: 452 YTTGPSYMPLRNMHVLVVDDHPLQCEALLEELRAADTHADAASSGRSAMIALRRAAAGDG 511
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
K +++L+++++ E D L + + + + + +++ R T
Sbjct: 512 KPFDIVLIDEDMPEMD----ALTLAHHIRADPTISGTVLVFLSTVQRRRGLTELADSGFQ 567
Query: 843 SVIMKPLRSS----MLAASLQRAM---------GVGNKGNIRNWELPSMSLRHLLLGRKI 889
+ KP+ S +LA +R + G+ + ++R+ PS + R L+ ++
Sbjct: 568 GYLRKPVHRSHLLDVLATVWERHLAPDSTSAPRGIVTRHSVRSDHTPSGNWRPLIASARV 627
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGY 947
L+V+DN VN KVA L G V G++A +L+ +P +D FMD+QMPEMDG+
Sbjct: 628 LVVEDNVVNQKVARRMLSHLGCRVDVAGNGREALQLIDQVP---YDLVFMDVQMPEMDGF 684
>gi|298530006|ref|ZP_07017408.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509380|gb|EFI33284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1562
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 175/565 (30%), Positives = 281/565 (49%), Gaps = 61/565 (10%)
Query: 418 EDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRT 477
E H + +++AEAA+ AKS FLA +SHEIRTPMN V+G+ +L+ T LD Q+DY+
Sbjct: 785 ESEHQVQLAREEAEAANRAKSDFLANMSHEIRTPMNAVIGLSQLLLQTSLDDRQRDYLNK 844
Query: 478 AQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVY 537
S + L+ +IN++LD +K+E+GKLEL+ +F + +LD + +LF ++DKG+E+
Sbjct: 845 ISNSSRMLLGIINDILDYSKIEAGKLELDMHTFRMDELLDQMKTLFGSTAEDKGLEIIFN 904
Query: 538 ISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSK 597
IS VP L GD R Q+ TNL+GN++KFTEKGH+ + V+ E EV + + +
Sbjct: 905 ISTDVPRILKGDSLRLGQVFTNLLGNAVKFTEKGHVELAVHKSEVRSQESEVRDQGTEVR 964
Query: 598 NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 657
+ G DR +G + ++D S + ++ L+ ++DTG G+ E R+F
Sbjct: 965 SQDLGQGTGDRG---QGLEAADRD--------SESKIVRLLFEIKDTGIGMDDEQVQRLF 1013
Query: 658 TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTS 717
PF Q S +R +GGTG+GL IS LV RM G + S P GS F F
Sbjct: 1014 QPFSQADTSTTRKYGGTGLGLVISHKLVQRMGGTLQVDSTPGQGSRFYFEI--------- 1064
Query: 718 NEHNSQQMNNQPNSVSSE----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ P S +++ F + LVVD +V R ++ QV+ D
Sbjct: 1065 ------DLPMAPESETTQECIGFDSHRVLVVDDHEAARQVLRNILESCMFQVKEAHDGRS 1118
Query: 774 CLSQIASGSKI---INMILVEQEV-WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS--- 826
+ + + + + ++ ++ E D + ++ L G FL N
Sbjct: 1119 AVDAVVAADRAGEPYEFVFMDWKMPGELDGLQAAREIDRLYAEG-------FLKGNRPPF 1171
Query: 827 --ISS-SRANTSTDGVSIPSVIM-KPLRSSMLAASLQRAMGVGNK--GNIRNWELPSMSL 880
+S+ R+ D V + + KP+ +S + ++ A G + + +PS
Sbjct: 1172 VVVSAYQRSELPEDSVECFNCFLSKPVTASSIFNAIAEATGKAPSYTRDDEQFTIPSFQ- 1230
Query: 881 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 940
G IL+ +DN +N +VA L++ GAA+ G +A E++ FD MD+Q
Sbjct: 1231 -----GYSILLAEDNALNQEVAWQMLEKTGAALSLAANGAEAVEMV-EAGSFDLVLMDLQ 1284
Query: 941 MPEMDGYE----MLPCFESFLLIAI 961
MP MDG+E +L F +IA+
Sbjct: 1285 MPVMDGFEATRKILERFPDLPVIAL 1309
>gi|357404372|ref|YP_004916296.1| Multi-sensor hybrid histidine kinase (modular protein)
[Methylomicrobium alcaliphilum 20Z]
gi|351717037|emb|CCE22702.1| Multi-sensor hybrid histidine kinase (modular protein)
[Methylomicrobium alcaliphilum 20Z]
Length = 1528
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 163/543 (30%), Positives = 259/543 (47%), Gaps = 78/543 (14%)
Query: 413 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 472
I +E ++E K+ AE A+ AKS FLA +SHEIRTPMN +LG+ ++++T+L+ Q+
Sbjct: 781 IGARKETEAALIEAKQSAETANRAKSAFLANMSHEIRTPMNAILGLTQLVLETDLNARQK 840
Query: 473 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 532
D+++ AS KAL+S++N+VLD +K+E+G+LE++ VSF + ++L V LF+ + ++KG+
Sbjct: 841 DFLQKVHASSKALLSILNDVLDYSKIEAGRLEIDRVSFRVESVLTSVADLFAARIEEKGL 900
Query: 533 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592
EL I TLIGDP R Q++ NL+GN+IKFT +G + + V +E+ DS+ ++
Sbjct: 901 ELFFEIEALANRTLIGDPLRLTQVLNNLVGNAIKFTNEGEVHIKVEAIEQSDDSLLLQ-- 958
Query: 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 652
SV DTG G+ E
Sbjct: 959 ----------------------------------------------FSVRDTGIGLSQEK 972
Query: 653 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712
+F PF Q SI+R GGTG+GL+I +V M G IG + G+ FTFT G
Sbjct: 973 AELLFQPFTQADSSITRQFGGTGLGLAICSKIVALMGGTIGAAGVEGKGAVFTFTVRVGI 1032
Query: 713 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 772
+ N S + + LVVD + + + G+ +
Sbjct: 1033 EAEAPQ-----------NLDLSRIRAQRVLVVDDQSTSRLILECLLTEWGVICDTSDSGE 1081
Query: 773 QCLSQIASGSK---IINMILVEQEVWE----KDTSVSTLFVNNLRKLGCGFQSKLFLLAN 825
L QI + + +L++ W V+ N+ RK G ++
Sbjct: 1082 DALRQIYRAEQKNCPFSTVLLD---WRMPGMSGAEVAERLENDCRK-GLLKHPLTVIMIT 1137
Query: 826 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL 885
+ + D + ++ KP+ S+L +L G+ + + ++R L
Sbjct: 1138 AYDKEQLLAQADRIHFDKILTKPVTPSVLYETL-----AGHSVIPKPEDKALGAIR--LD 1190
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
G KIL+V+DN +N +V L+ GA+V E G+ A + L FD MD+QMPEMD
Sbjct: 1191 GVKILVVEDNALNQEVVVEILQNRGASVTVAENGRVALDKL-EQEIFDIVLMDLQMPEMD 1249
Query: 946 GYE 948
G+E
Sbjct: 1250 GFE 1252
>gi|171059399|ref|YP_001791748.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
gi|170776844|gb|ACB34983.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
Length = 1255
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 167/524 (31%), Positives = 251/524 (47%), Gaps = 75/524 (14%)
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489
AEAA AKSQF+A++SHEIRTPMNG+LGM ++L+ T LD Q+ + + SG+ L+ +I
Sbjct: 590 AEAASQAKSQFMASMSHEIRTPMNGILGMTELLLGTRLDDRQRRFAQAVYRSGENLLEII 649
Query: 490 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 549
N+VLD +K+E+G+LEL FNLR +++D L L + ++ +KG+EL+ + VP ++ D
Sbjct: 650 NDVLDFSKIEAGRLELAPTDFNLRTLIEDTLDLLAPRAHEKGLELSFRETGDVPANVLAD 709
Query: 550 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 609
P R RQ++TNL+ N++KFTE G EV +L +G P
Sbjct: 710 PLRLRQVLTNLVANAVKFTEHG----------------EVTVDLRFLPRPRAGAPAM--- 750
Query: 610 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669
L V DTG G+ E R+FT F Q ++R
Sbjct: 751 ---------------------------LEFRVRDTGIGMAAELLPRLFTAFTQAHGGMAR 783
Query: 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 729
+GGTG+GL+IS+ LV M G+I VS P +GS F FT F GS +E + ++ P
Sbjct: 784 RYGGTGLGLAISRQLVELMGGQIDVVSQPGVGSEFRFTMTFEPGSGRDSE--AGELTALP 841
Query: 730 NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKIIN 786
+ + LVV+ V + + G+ V + D L+ L + +
Sbjct: 842 QA--------RVLVVEDHATNRTVLDHLLSAWGLSVTLAVDGQAALELLRNRPADQPDFD 893
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+ LV+ W F LR G ++L +L+++ + A + D + I
Sbjct: 894 IALVD---WRMPRLDGIGFAKALRAEGLAPGTQLVMLSSASAPDDARLAQDAGFV-RFIH 949
Query: 847 KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 906
KP+R + L ++ +GV R E +R ++L+V+DN VN +V L
Sbjct: 950 KPVRKAELRQAI---LGVTAS---RGVEPVDAQVRA-----QVLVVEDNPVNQEVMGQML 998
Query: 907 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEML 950
R G V +L D MDIQMP MDG E L
Sbjct: 999 HRLGCRVRVAGTALDGLRVLC-EQPVDLVLMDIQMPGMDGIEAL 1041
>gi|218782287|ref|YP_002433605.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
gi|218763671|gb|ACL06137.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
Length = 1349
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 165/535 (30%), Positives = 252/535 (47%), Gaps = 99/535 (18%)
Query: 432 AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINE 491
AA+ AK +FLA +SHEIRTPMNG++GM +L DT L+ Q+D ++T +S ++L+ +IN+
Sbjct: 695 AANKAKGEFLANMSHEIRTPMNGIIGMASLLEDTPLNNEQKDLLQTISSSAESLLRIIND 754
Query: 492 VLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG 551
+LD +K+E+GKL+LE + F+ R+ ++DV +L + ++ KG+++ IS +VP ++GDPG
Sbjct: 755 ILDYSKIEAGKLDLERIEFDPRSTVEDVTALMAKTAEQKGLQITSLISHKVPSKVVGDPG 814
Query: 552 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHS 611
R RQ++ NL GN+IKFT KG + V + EE
Sbjct: 815 RLRQVLMNLTGNAIKFTSKGEVIVRALVDEE----------------------------- 845
Query: 612 WKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 671
++ G+T F+ + DTG G+P S ++ F Q PS +R +
Sbjct: 846 -------DRGGATLRFE------------IIDTGIGVPQSRLSSLYESFTQADPSTTRRY 886
Query: 672 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNS 731
GGTG+GL+ISK L M G+IG S GS F FT + M+ P +
Sbjct: 887 GGTGLGLTISKQLCRLMGGKIGAESKEGEGSLFWFTVKM---------ERPRNMDVAPPA 937
Query: 732 VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI---------QVEVVSDQLQCLSQIASGS 782
S QG + L+ D R HI R+ + QVE + +CL + +
Sbjct: 938 PVS-LQGKRILLADAR---------HINRMALTEMFRMWRCQVEHAASGKKCLELLRQAT 987
Query: 783 K--------IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 834
+ II+ L + E E + N+ +LA
Sbjct: 988 EQGREFDCLIIDYSLADMEGIE---------LGNIILHDPSLNHNQLILAAPPGMLGEGG 1038
Query: 835 STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR---KILI 891
G+ + KP R S L L + +K + E M RH L+ ++L+
Sbjct: 1039 KLRGIGFAGYLTKPFRHSQLKDMLLAVLAKEDKA--QAGESRKMVTRHTLMENSKLRVLL 1096
Query: 892 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
V+D VN KVA ++ G VV + G++ E FD FMD+QMP MDG
Sbjct: 1097 VEDQMVNQKVAVKIIQNMGHGVVVADNGQEGLEAF-KNGAFDIVFMDVQMPVMDG 1150
>gi|452966229|gb|EME71242.1| sensor protein gacS [Magnetospirillum sp. SO-1]
Length = 965
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 180/625 (28%), Positives = 288/625 (46%), Gaps = 105/625 (16%)
Query: 352 VSDDGLWLVSTLNFGD-----PFRKHEMRCRFKQKAPWPLLAISTS---------IGILV 397
++DD N D PFR R R P L ++ +G
Sbjct: 230 IADDTPMEARRQNLADMEARRPFRDFVYRTR-NMSGPGRFLRVNGKPVFGPAGEFLGYRG 288
Query: 398 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
AS + +A A E + + K+ AEA + KS+FLAT+SHEIRTPMNGV+G
Sbjct: 289 TASDITEEIEAEARLKATQAEMERRLRDAKEAAEAGNRIKSEFLATMSHEIRTPMNGVIG 348
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
M +L+DT L Q+ + T + SG++L+++IN++LD +K+E+GKL+L+ F L +++
Sbjct: 349 MTGLLLDTRLSEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVE 408
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
V+ + + ++ KG+E+A I R+ + DPGR RQ++ NL GN++KFTEKG + +
Sbjct: 409 SVVDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEA 468
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 637
L+E + ++ + V D
Sbjct: 469 TLLE------------PRGEAQMARFDVRD------------------------------ 486
Query: 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697
+G GI EAQ R+F+ F QV S +R +GGTG+GL+ISK L M GE+G S
Sbjct: 487 ------SGIGIAPEAQHRLFSMFSQVDASTARRYGGTGLGLAISKKLAELMGGEVGMESA 540
Query: 698 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVS-SEFQGMKALVVDPRPIRAKVSRY 756
P GS F T + P S++ + + + LVVD P+ +
Sbjct: 541 PGQGSRFWITLPLDLLA--------------PQSLAPPDLRNRRVLVVDDNPVNRDIIER 586
Query: 757 HIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEK---DTSVSTLFVNNLRKL- 812
++ G++V Q ++ +G + + V E WE D+ + + + ++
Sbjct: 587 QLRAFGVRV-------QACAEAGAGMEELTRAAVSGEPWEVAVIDSQMPMVTGPEMVRMI 639
Query: 813 -GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG--- 868
S ++ S A + D +I + KPLR S L ++ R +G+ ++
Sbjct: 640 RAIPMLSGTRIIVTSSQGLAAEPNQDKAAIDGFLHKPLRQSTLLDTIGRVLGLSDRPAHS 699
Query: 869 ---NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL 925
P + R L +IL+ +DN VN +VA L++ G +V V G +A E
Sbjct: 700 AGHEQEETGAPESAGRRL----RILVAEDNPVNQQVALGLLRKLGHSVDVVGDGAEALEA 755
Query: 926 --LMPPHQFDACFMDIQMPEMDGYE 948
L+P +D MD+QMP MDG E
Sbjct: 756 VRLLP---YDLVLMDVQMPGMDGLE 777
>gi|167629981|ref|YP_001680480.1| signal transduction histidine kinase [Heliobacterium modesticaldum
Ice1]
gi|167592721|gb|ABZ84469.1| signal transduction histidine kinase [Heliobacterium modesticaldum
Ice1]
Length = 703
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 147/446 (32%), Positives = 237/446 (53%), Gaps = 50/446 (11%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ EE+ H K++AEAAD AKS FLATVSHEIRTP++G++GM+D+L+DT L Q Y
Sbjct: 285 RAEEELHMA---KERAEAADRAKSAFLATVSHEIRTPLHGIIGMIDLLLDTALTEEQASY 341
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
RT + L S+IN++LD +K+E+G++ELE V + LRA+++DV++L +S+ K +++
Sbjct: 342 GRTIGELSRLLSSIINDILDFSKMEAGRIELEVVDYELRAVVNDVVNLLRVRSEQKNLDI 401
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
I VP L GDP R RQ++ NL GN++KFTEKG + + + +++ E S
Sbjct: 402 TCDIDREVPPFLRGDPIRLRQVLINLGGNAVKFTEKGKVALRI--------AMDSRAEQS 453
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
N ++ + + C DTG GI E
Sbjct: 454 DPVNEVARFLRFEIC---------------------------------DTGIGITDEVAP 480
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
R+F PF Q S +R +GGTG+GL+ISK LV M GEIGF SIP +G+TF FT S
Sbjct: 481 RLFQPFSQADMSTARRYGGTGLGLAISKRLVELMGGEIGFRSIPGLGTTFWFTMPLLESS 540
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 774
+ + E + Q + + + E + L+V+ P+ K++ +++ G+ + VS+ +
Sbjct: 541 AQAAEDSRAQ--EKADLLLPELPEKRILLVEDNPVNQKLASIQLKKFGLPLLAVSNGREA 598
Query: 775 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 834
+ + + ++IL++ ++ E D +T + + G + + A ++ R
Sbjct: 599 VEAVR--REKYSLILMDCQMPEMDGFEATREIRRIEAEQGGHVPIVAMTARAMRGDREEC 656
Query: 835 STDGVSIPSVIMKPLRSSMLAASLQR 860
G+ I KP+RS+ L L R
Sbjct: 657 LACGMD--DYISKPIRSADLRRILNR 680
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 846 MKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905
M L SS AA RA K ++ ELP ++IL+V+DN VN K+A+
Sbjct: 534 MPLLESSAQAAEDSRAQ---EKADLLLPELPE---------KRILLVEDNPVNQKLASIQ 581
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
LK++G ++ V G++A E + ++ MD QMPEMDG+E
Sbjct: 582 LKKFGLPLLAVSNGREAVEAVR-REKYSLILMDCQMPEMDGFE 623
>gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 1191
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 179/563 (31%), Positives = 271/563 (48%), Gaps = 93/563 (16%)
Query: 403 GHI----FQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGM 458
GHI F V + + E+ + + K AEAA+ AKS FLA +SHEIRTPMNGV+GM
Sbjct: 509 GHIVWNGFLTDVTQARHISEE---LQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGM 565
Query: 459 LDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 518
++L+DT LD QQ+Y+ ++S +AL+ +IN++LD +K+E+GK+++E++ FNL + D
Sbjct: 566 TELLLDTTLDAEQQEYLNIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVAD 625
Query: 519 VLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVY 578
L ++ DKG+E+ ++ VP L+GDPGR RQ++ N++GN+IKFTE+G +
Sbjct: 626 TLKTVVLRAHDKGLEVVWDVAPDVPRALVGDPGRLRQVLVNILGNAIKFTERGEVV---- 681
Query: 579 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLI 638
+ + E++S +G P+ L
Sbjct: 682 --------LRIRQEVAS-----NGKPL-------------------------------LH 697
Query: 639 VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 698
++V DTG GIP IF F Q S +R +GGTG+GL+I LV M G I S P
Sbjct: 698 LAVSDTGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIWVESTP 757
Query: 699 NIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHI 758
GS F FT +S E + G+ LVVD + +V +
Sbjct: 758 GQGSVFHFTVALVKDTSAPVE----------TAALIRLDGLHILVVDDNLVNREVVCGML 807
Query: 759 QRLGI---QVEVVSDQLQCLSQIASGSKII--NMILVEQEVWEKDTSVSTLFVNNLRKLG 813
G Q + L LSQ + + + +++L++ ++ E D + V L
Sbjct: 808 HSFGARTSQADSGRAALDWLSQQTAANAQVPCDLVLLDGQMPEMDGFSTAPLVRGLPN-- 865
Query: 814 CGFQSKLFLLANSISSSRANTSTDG-----VSIPSVIMKPLRSSMLAASLQRAMGVGNKG 868
C + L S A DG V I + KP+ L LQ GV
Sbjct: 866 CSSLPMVLL-------SSAGMKGDGQRSRQVGIAGYLSKPIARQDL---LQMVSGVLQMH 915
Query: 869 NIRNWELPSM-SLR--HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL 925
+R L + S+R H +L IL+V+D+ +N K+A L+R+G V G+ A ++
Sbjct: 916 KVRPEVLVTRHSIRDSHPVL--DILLVEDHAINQKLAVTLLQRWGHHVDVAGNGQIALDM 973
Query: 926 LMPPHQFDACFMDIQMPEMDGYE 948
L P +D MD+ MP MDG E
Sbjct: 974 L-PKRPYDLILMDMMMPVMDGLE 995
Score = 43.9 bits (102), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA------CFM 937
L G IL+VDDN VN +V L +GA + G+ A + L +A +
Sbjct: 785 LDGLHILVVDDNLVNREVVCGMLHSFGARTSQADSGRAALDWLSQQTAANAQVPCDLVLL 844
Query: 938 DIQMPEMDGYEMLP 951
D QMPEMDG+ P
Sbjct: 845 DGQMPEMDGFSTAP 858
>gi|373957347|ref|ZP_09617307.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
gi|373893947|gb|EHQ29844.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
Length = 1437
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 169/528 (32%), Positives = 265/528 (50%), Gaps = 78/528 (14%)
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
+AE A+ AKS FLAT+SHEIRTPMNGV+GM +L++T+L+ Q++Y T G +LV++
Sbjct: 916 EAEKANQAKSVFLATMSHEIRTPMNGVIGMASLLVETDLNTEQREYAETIITCGDSLVNV 975
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
IN++LD +K+ESGK+++E + F+LR +++V+ LF + +G++L I VP +IG
Sbjct: 976 INDILDFSKIESGKMDIEHIDFDLRHSIEEVMDLFGPRVALRGIDLIYEIDYNVPRQIIG 1035
Query: 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
D R +Q++ NL+ N+IKFTEKG +FV + L+
Sbjct: 1036 DSLRLKQVLINLINNAIKFTEKGEVFVKISLL---------------------------- 1067
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
K I+L +V DTG GIP E S +F PF QV S +
Sbjct: 1068 -------------------KQDDHGGIDLAFTVTDTGIGIPEEKLSNLFKPFSQVDSSTT 1108
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 728
R +GGTG+GL IS+ LV M EI S GS F+F S E ++ Q+
Sbjct: 1109 RKYGGTGLGLVISERLVKLMGDEIWAESNFGKGSVFSF--------SIKAEISTAQLKRI 1160
Query: 729 PNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINM 787
SV+ + +G K LVVD + + +Q+ + S + L+ +A+ + N+
Sbjct: 1161 QVSVNMDGLEGKKILVVDDNQTNLTILKTQLQQWKLIPVTASSAKEALAILAADNS-FNL 1219
Query: 788 ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMK 847
++ + E+ + D L K S L ++ S ++ G+ S+++K
Sbjct: 1220 VITDMEMPDMDGV-------GLAKAIKHVHSNLPVIMLSSIGDESSKKNPGL-FASILVK 1271
Query: 848 PLRSSMLAASLQRAMGVGNKGNIRNWELPS-------MSLRHLLLGRKILIVDDNNVNLK 900
P + S L+ S++ + GN+ ++ E S SL H L IL+ +DN +N K
Sbjct: 1272 PAKQSQLSKSIRAEL--GNQREEKSTEEKSANTLEGGFSLLHPL---SILVAEDNLINQK 1326
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+ L + G + V G + E +M +D MD+QMPEMDG E
Sbjct: 1327 LIQRILNKMGYTIEIVANGYEVLEQMMLK-TYDVILMDVQMPEMDGLE 1373
>gi|443477298|ref|ZP_21067155.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
gi|443017594|gb|ELS32000.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
Length = 834
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 172/572 (30%), Positives = 270/572 (47%), Gaps = 85/572 (14%)
Query: 403 GHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 462
H F I +++ ++ ++ AE ++ AKS FLA +SHEIRTPMNGVLGM D+L
Sbjct: 260 NHDFVYVGRDITELKRKEQELLAARQFAEQSNRAKSIFLANMSHEIRTPMNGVLGMTDLL 319
Query: 463 MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 522
+ T LD QQD+V + SG L+SLIN +LD +K+E G+L+LE++ FNL ++++L L
Sbjct: 320 LSTTLDDRQQDFVENIRLSGNLLLSLINRILDLSKLEEGELQLESLPFNLEQCIEEILEL 379
Query: 523 FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 582
F ++ ++ +E+ + +P L+ D RFRQI+ NL+GN+IKFT +G I V +
Sbjct: 380 FGLQAHNQSLEINASFEEDLPRLLMADTVRFRQIMMNLIGNAIKFTSEGEIVVRI----- 434
Query: 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 642
+R ++ K+ Q +S I L SV
Sbjct: 435 ------------------------ERDRDFENKKSLEQ---------ASPSQIYLRFSVI 461
Query: 643 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP---N 699
DTG GI Q ++F PF QV S +R GGTG+GL+IS+ LV M+GEIG +S P +
Sbjct: 462 DTGIGIHPSNQDKLFKPFSQVDTSTNRRFGGTGLGLAISRQLVELMQGEIG-ISSPVDND 520
Query: 700 IGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMK---ALVVDPRPIRAKVSRY 756
G+ F F F + Q N + +S+ + Q + LVVD K RY
Sbjct: 521 RGTCFWFVLPF-----------TLQTNQESSSLVYDRQSLSDRHILVVDANQYARKTIRY 569
Query: 757 HIQRLGIQVEVVSDQLQCLSQIASG-------SKIINMILVEQEVWEKDTSVSTLFVNNL 809
++ + G + S + ++ + G + I+ +L++ W T + +
Sbjct: 570 YLTKFGANIHEASSLPEAIAYLDHGQNQNHNNNHNIDAVLID---WRLTNFNGTEAIRQI 626
Query: 810 RKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGN 869
+ L + T+ D + KP + L +L A+G+ N
Sbjct: 627 HSKEKFINLPIIALLTANRQGETQTALDQ-GFCGYVTKPFKKQRLLKALFLALGL----N 681
Query: 870 IRNWELPSMS-------------LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCV 916
I N +P+ + L L +IL+ +DN N KV A L + G
Sbjct: 682 IPNPSIPTTASSISSRENQEEAILMEKLRSLRILLAEDNITNQKVTLAYLSQLGIQSDLA 741
Query: 917 ERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
E G++ +L+ +D MD QMP +DGY+
Sbjct: 742 ENGEQVLQLIQ-TKSYDIILMDCQMPVLDGYD 772
>gi|428213858|ref|YP_007087002.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002239|gb|AFY83082.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1437
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 180/564 (31%), Positives = 277/564 (49%), Gaps = 72/564 (12%)
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
+A AA AKS+FLAT+SHEIRTPMN V+GM +L+DT+L+ Q+D+V T +ASG AL+++
Sbjct: 674 EALAATRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTDLNPEQRDFVETVRASGDALLTI 733
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
IN++LD +K+ESGKL+LE FNLR+ ++D L L + ++ +KGVELA I PE +IG
Sbjct: 734 INDILDFSKIESGKLDLEQQPFNLRSCIEDSLDLLASRAAEKGVELAYLIEPSTPEMIIG 793
Query: 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTV---YLVEEVVDSIEVETELSSSKNTLSGYPV 605
D R RQI+ NL+ N++KFTEKG + V+V + + I ++ + + T +G+
Sbjct: 794 DVTRVRQILVNLLSNAVKFTEKGEVVVSVSASAIPPQQAGGIGTDSLILKDQETTNGH-- 851
Query: 606 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665
H K N D S+ L + +V DTG GIP E +R+F F QV
Sbjct: 852 ---LH-----KDLNPD------SSAGNPLCQIQFTVSDTGIGIPPERMNRLFKSFSQVDS 897
Query: 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS---------- 715
S +R +GGTG+GL+ISK L M G + VS +G + SS
Sbjct: 898 STTREYGGTGLGLAISKRLSELMGGRMWVVSGEGVGGDPDPAFQWPIASSVQEQSSPMPD 957
Query: 716 ------TSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS 769
T + S Q + P + F M V+P P+ ++ + G +V +V
Sbjct: 958 PEQSIFTLTDAKSDQADTPPTGSTFYFTVMATPAVNPLPVDLNGTQPSLA--GKRVLIVD 1015
Query: 770 DQL---QCLSQIA--------------------SGSKIINMILVEQEVWEKDTSVSTLFV 806
D Q L++ A S++ ++ +++ ++ + D ++
Sbjct: 1016 DNATNRQILTRQALFWGMKPKAASSAREALDWLQNSEMFDIAILDMQMPQMDGITLASYI 1075
Query: 807 NNLRKLGCGFQSKLFLLANSISSSRANTS-TDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865
+ K ++ F L S R D V + + KP++ S L L G G
Sbjct: 1076 RGIVK------NREFPLVMLTSIGRQEVDLPDKVPFAAFLNKPIKQSYLYNVLAGIFG-G 1128
Query: 866 NKGNIRNWELPSMSLRHLLLGRK---ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA 922
R L ++++ + +K IL+ +D+ VN KVA L R G G +
Sbjct: 1129 VPILSRPVHLNAVAIDPQMAQQKPLRILLAEDHLVNQKVALQILHRLGYRADVAGNGIEV 1188
Query: 923 TELLMPPHQFDACFMDIQMPEMDG 946
+ L H +D MD+ MPEMDG
Sbjct: 1189 LQALDRQH-YDVVLMDVHMPEMDG 1211
>gi|334119823|ref|ZP_08493907.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333457464|gb|EGK86087.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1702
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 179/553 (32%), Positives = 270/553 (48%), Gaps = 78/553 (14%)
Query: 420 YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQ 479
+ + ++ A A KS FLA +SHEIRTPMNGV+GM D+L+ T L Q D+V+T +
Sbjct: 1006 FEQAQQAREAALEASRMKSLFLANMSHEIRTPMNGVMGMTDLLLKTNLTPEQIDFVQTLK 1065
Query: 480 ASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 539
SG+ L+S+IN++LD +K+E+G++ LE + FNL +++VL L + +Q+KG+E+ I
Sbjct: 1066 LSGQNLLSIINDILDLSKLEAGEMRLEILEFNLSICMNEVLDLLATPAQEKGIEVVALID 1125
Query: 540 DRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNT 599
VP + GD R RQI+TNL+ N+IKFTE G + + EV D+ L++S N
Sbjct: 1126 TDVPLQIKGDAARLRQILTNLINNAIKFTEAGEVVI------EVADASNPGL-LAASDNQ 1178
Query: 600 LSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659
K + P K + D + L+ V DTG GI E Q ++F
Sbjct: 1179 ----------------KILEK---IEPLKIENNDSMLLLFKVTDTGIGIATEDQKKLFQS 1219
Query: 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT--AVFGN--GSS 715
F QV S +R +GGTG+GL+ISK LV M G+IG S P GSTF FT V N G
Sbjct: 1220 FTQVDASTTRKYGGTGLGLAISKELVELMGGQIGVESTPGQGSTFWFTVPTVKENLTGVG 1279
Query: 716 TSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QL 772
T+ E N + + G K L+ +P KV G++VE V + +
Sbjct: 1280 TACEVN----------LETVLAGRKMLIASDKPTVRKVLVRMAVVWGMEVEEVENGWMTI 1329
Query: 773 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF----QSKLFLLANSIS 828
L + S + +++LV D + + +L +L Q+K +L +
Sbjct: 1330 ASLYKAVSLNSPYDIVLV-------DIQLPEMVAGSLERLRISEPAMQQTKWVVLTSMTQ 1382
Query: 829 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG------------VGNKGN-IRNWEL 875
+ A D + KP+++ L L A+ N+ + I N +L
Sbjct: 1383 LAEAKRLVDS-GFSGYLTKPVKAHRLFDCLANAIAPSTLIDESQANPTSNRASAIDNRDL 1441
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
S+ KIL+V+D +N KV L+ G A G +A ++ ++D
Sbjct: 1442 ASL---------KILLVEDTPINQKVGLNQLRVLGCAADVANNGAEALSMV-ALKKYDIV 1491
Query: 936 FMDIQMPEMDGYE 948
MD QMP +DGYE
Sbjct: 1492 LMDCQMPVLDGYE 1504
>gi|389578386|ref|ZP_10168413.1| PAS domain S-box [Desulfobacter postgatei 2ac9]
gi|389400021|gb|EIM62243.1| PAS domain S-box [Desulfobacter postgatei 2ac9]
Length = 1630
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 170/559 (30%), Positives = 266/559 (47%), Gaps = 84/559 (15%)
Query: 411 NRIAKVEEDYHGMMELKKK----AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE 466
N++ V E L K+ AE A AKS+FLA +SHEIRTPMNG++GM +L+DT+
Sbjct: 931 NKLITVNEHLKNQTALAKRMAAGAEMATRAKSEFLANMSHEIRTPMNGIIGMTGLLLDTD 990
Query: 467 LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGK 526
L Q+ + +AS AL++LIN++LD +K+E+GKL++E + F LR LDD + + K
Sbjct: 991 LSDEQRLFTGNVKASADALLTLINDILDFSKIEAGKLDMEILDFELRPFLDDFAHMMALK 1050
Query: 527 SQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 586
+ +K +EL +S VP L GDPGR RQI+TNL N+IKFT G + + +L
Sbjct: 1051 AHEKDLELICEVSPEVPGQLQGDPGRLRQILTNLTDNAIKFTNAGEVVIQAHL------- 1103
Query: 587 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 646
K + + + + SV+DTG
Sbjct: 1104 -----------------------------------------KHQTKEEVLIYFSVKDTGV 1122
Query: 647 GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS-IPNI----- 700
GI E Q +F F QV SI+R +GGTG+GL+ISK L M G+IG +S +P I
Sbjct: 1123 GIAPEKQGHLFEQFTQVDASITRKYGGTGLGLAISKKLAQLMGGDIGVISPVPEINKLAS 1182
Query: 701 --------GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAK 752
G F FTA F S++ + Q++ P + ++ L+VD +
Sbjct: 1183 RPSDSLHSGCLFWFTAQFKQPPSSAETGHEQKIMPDP------LKNVRILIVDDNRTNRE 1236
Query: 753 VSRYHIQRLGIQVEVVSDQLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNL 809
+ +G +V +D L +I A +++ ++ +++ ++ L +
Sbjct: 1237 TLVRQLVGMGAKVSEAADGKAALEKIKRTAQENRLYDLAILDIQMPGMTGDKLGLAI--- 1293
Query: 810 RKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGN 869
+K G KL L+ SI + + KP+R S L+ +L + G G
Sbjct: 1294 KKEAFGADIKLVLML-SIGRRGDARYFQSIGFSGYLTKPVRYSELSDTLASVLSGGQAGK 1352
Query: 870 IRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--M 927
N + ++ +IL+ +DN N VA L+++G +V V G +A L +
Sbjct: 1353 EENARIRHLNGEIKQPHVRILLAEDNITNQIVAKGILEKFGYSVDAVANGIEAIRALEKI 1412
Query: 928 PPHQFDACFMDIQMPEMDG 946
P +D MD+QM E+DG
Sbjct: 1413 P---YDMVLMDLQMSELDG 1428
>gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
Length = 2059
Score = 229 bits (585), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 168/532 (31%), Positives = 257/532 (48%), Gaps = 89/532 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AEAA AKS F+A +SHEIRTPMNG++GM D+ +DTEL Q++Y+ Q+S +L+
Sbjct: 1346 KETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQREYLTMVQSSAGSLL 1405
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+G+LEL+ F+LRA L D L + ++ KG+EL I+ +P++L
Sbjct: 1406 TIINDILDFSKIEAGRLELDQSDFSLRAHLYDTLKTLAWRAHQKGLELVCDIASDIPDSL 1465
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDPGR RQI+TNL+GN+IKFT +G + + V + + +
Sbjct: 1466 VGDPGRLRQIVTNLVGNAIKFTSEGEVDLVVKIDKYI----------------------- 1502
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
DG + L SV D+G GIP E IF F Q S
Sbjct: 1503 --------------DGE-----------VLLRFSVIDSGIGIPKEKLHLIFEAFSQADGS 1537
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R +GGTG+GL+IS LV MKG++ VS P GSTF FTA F ++
Sbjct: 1538 ITRRYGGTGLGLTISTRLVELMKGKLRVVSKPGKGSTFEFTAQF---------PTKPDLD 1588
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSK 783
+ + + + LVVD KV + GI + D + +++ A ++
Sbjct: 1589 LGETPIGVKLKDVHTLVVDDNKNTVKVLCQMLFEFGITSDSTDNGQDAYKMMTKAAQSNR 1648
Query: 784 IINMILVEQEVWEKDTSVSTLFV-------NNLRKLGCGFQSKLFLLANSISSSRANTST 836
+ ++ ++ DT++ L N+ L CG R
Sbjct: 1649 PYEFLFIDAQI---DTNIVDLISEDPKLSKTNVIMLICG------------GGQRGCPEN 1693
Query: 837 DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 896
I + KP+ S + LQ+ G+ + + P + G IL+ +DN
Sbjct: 1694 ASSLIGGYLSKPVSPSEMLEILQK-QGISRQSKVCKKIQPISE----IFG-DILLAEDNV 1747
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VN ++A L+++G V E G +A H FD MD+QMP M G+E
Sbjct: 1748 VNQRLAVRLLEKFGHKVTLAENGLQAVAACEIKH-FDLILMDVQMPHMGGFE 1798
>gi|186682103|ref|YP_001865299.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
gi|186464555|gb|ACC80356.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
Length = 1559
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 173/551 (31%), Positives = 257/551 (46%), Gaps = 102/551 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+ +AE A KS FLA +SHEIRTPMN VLGM ++++T L+ QQD++ T + SG AL+
Sbjct: 886 RHQAELASKTKSAFLANMSHEIRTPMNAVLGMTGLMLETPLNSEQQDFIETIRISGDALL 945
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
SLINE+LD +K+E+G++ LE + F+L L++VL L + + +KG+E+A I VP L
Sbjct: 946 SLINEILDLSKLEAGEMALETLDFDLSTCLEEVLELLAPSAHNKGLEIAALIYPNVPTQL 1005
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD GR RQI+ NL+ N+IKFT G + V L
Sbjct: 1006 QGDAGRLRQILMNLISNAIKFTSNGEVVVRAEL--------------------------- 1038
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+S S+ + ++ DTG GI E Q R+FTPF QV S
Sbjct: 1039 ---------------------RSLSSTTATIYFAITDTGLGITFEDQCRLFTPFTQVDAS 1077
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I K LV M GEIG S GS F F F +QQ+
Sbjct: 1078 NTRKYGGTGLGLAICKQLVSLMGGEIGVESRLGKGSKFWFEVTF-----------AQQLY 1126
Query: 727 NQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 783
P S SE + + + LVVD K+ + R G+ V+ + L I +K
Sbjct: 1127 --PISSESERELLINRRLLVVDDNATNRKIIHHQATRWGMLVDQAASATIALKAIEETAK 1184
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL--------FLLANSISSSRANTS 835
N+ D +V + + + + G Q K ++ S +
Sbjct: 1185 QKNLY---------DIAVIDMHMPEVDGMTLGEQIKANSAIAGLPLIMLTSTNQRDEIQR 1235
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMG--VGNKGNIRNWELP---------SMSLRHLL 884
+ + ++KP++ S L ++ +G + + +R+ E S L
Sbjct: 1236 ALKIGFAAYLVKPVKPSRLLDTIMTILGTQIKEETEVRSQEFKLKDYENNSNDHSSSSRL 1295
Query: 885 LGR-----KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFM 937
L R +IL+ +DN VN KVA L+ G + GK+ +LL +P +D M
Sbjct: 1296 LARDFHKLRILLAEDNLVNQKVALKQLQSLGYSADVAGNGKEVLQLLEKIP---YDLILM 1352
Query: 938 DIQMPEMDGYE 948
D QMP +DG E
Sbjct: 1353 DCQMPVLDGLE 1363
>gi|359459603|ref|ZP_09248166.1| two-component hybrid sensor and regulator [Acaryochloris sp. CCMEE
5410]
Length = 1038
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 170/559 (30%), Positives = 281/559 (50%), Gaps = 71/559 (12%)
Query: 402 VGHIFQATVNRIAKVEEDYHGMM-EL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
+G + + ++ + +++ GM+ EL K +AEAA+ AKSQFLA +SHEIRTPMN V+G
Sbjct: 251 IGQLKDSMISLLKTRQQELEGMVSELQSAKHEAEAANQAKSQFLANMSHEIRTPMNAVIG 310
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
M +L++T L+ QQD+V T ++SG AL++LIN++LD +K+E+GKL+LE F +R ++
Sbjct: 311 MTGLLLNTPLEAQQQDFVETIRSSGDALLTLINDILDFSKIEAGKLDLEQQPFEIRTCIE 370
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
+ L + + K+ +K +ELA I+ P ++GD R RQ++ NL+ N++KFT +G V V
Sbjct: 371 EALLIVASKASEKNLELAYLINPPTPTAILGDITRLRQVLVNLLNNALKFTGEGE--VVV 428
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 637
Y+ + ++S +++ E +P++ +
Sbjct: 429 YVSSKPIESKDLDAE-----------------------SDLEVIAEATPYE--------I 457
Query: 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697
V+DTG GIP + R+F F QV S +R GGTG+GL+ISK L M G+I S
Sbjct: 458 QFDVKDTGIGIPPDKLERLFKSFSQVDASTTRKFGGTGLGLAISKQLSELMGGKIWVSSE 517
Query: 698 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS------EFQGMKALVVDPRPIRA 751
++GSTF+FT T++E PN VS + G + L+VD
Sbjct: 518 VSVGSTFSFTI-------TASEI--------PNYVSPKAASDVQLAGKQLLIVDDNATNR 562
Query: 752 KVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK 811
++ Q G+ V ++ L + G ++ +++ ++ E D +R
Sbjct: 563 EILSLQAQSWGMLTCAVKSGIKALEWLQRGVN-FDLAVLDMQMPEMD---GVTLAEKIRA 618
Query: 812 LGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 871
G L +L+ S+ ++ +++ KP++ + L + L + +G I+
Sbjct: 619 EPNGKTLPLVVLS-SLGQDDIRARAGDINFSAILNKPVQQAQLQSVLAQVLG---NPLIK 674
Query: 872 NWELPSMSLRHLLLGR----KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 927
+ P + LG +IL+ +D VN KVA LK+ G G + E L
Sbjct: 675 VEQAPDVQENPTNLGDQHPLRILLAEDMVVNQKVALLTLKQLGYRADVANNGLEVIEAL- 733
Query: 928 PPHQFDACFMDIQMPEMDG 946
+D MD+QMPEMDG
Sbjct: 734 ERQAYDVVLMDVQMPEMDG 752
>gi|383454339|ref|YP_005368328.1| sensory box histidine kinase/response regulator [Corallococcus
coralloides DSM 2259]
gi|380732170|gb|AFE08172.1| sensory box histidine kinase/response regulator [Corallococcus
coralloides DSM 2259]
Length = 909
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 167/550 (30%), Positives = 273/550 (49%), Gaps = 91/550 (16%)
Query: 420 YHGMMELKK---KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 476
YH + +L++ AE A+ AKS FLATVSHEIRTPMN ++GM +LMDT L Q+D+
Sbjct: 224 YHDVTDLQRARQSAEDANQAKSLFLATVSHEIRTPMNAIIGMAGLLMDTALTPEQRDFAS 283
Query: 477 TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 536
T + SG AL+ L+N++LD +K+E+G++ELE FNLR ++ VL L + ++ +K ++L
Sbjct: 284 TIRQSGDALLGLLNDMLDFSKIEAGRVELEQQPFNLRQCVESVLDLLAMRASEKSLDLGY 343
Query: 537 YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSS 596
+++D P +++GD R RQ++ NL+GN++KFTE+G + ++V
Sbjct: 344 HVTDETPVSVVGDGARLRQVLLNLVGNAVKFTERGGVSISV------------------- 384
Query: 597 KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 656
D P + L L +V+DTG GI A++ +
Sbjct: 385 ------------------------DTPRQPL--APGGLFELHFAVQDTGLGITEAARAGL 418
Query: 657 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS--IPNIGSTFTFTAVFGNGS 714
F PF Q+ S+SR +GGTG+GL+ISK LV M G + S +P G+TF FT
Sbjct: 419 FQPFNQLNESVSRRYGGTGLGLAISKRLVEAMGGRLWMESEGVPGKGATFHFT------- 471
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 774
+ E +P+++ + G + LVVD I K+ + G+ + V +
Sbjct: 472 FQAREAPRGGEPLRPDAL--KLHGRRVLVVDDNAINRKLLGRQLAAWGMAIVEVGSGAEA 529
Query: 775 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 834
LS++ SG++ ++ +++ + D ++R+ + L LL S + +
Sbjct: 530 LSKLESGAR-FDLAILDHRMPLMDGPT---LAAHIRQQRDARELPLLLL---TSFDQRDA 582
Query: 835 STDGVSIPSVIMKPLRSSMLAASL----------QRAMGVGNKGNIRNWEL------PSM 878
G+ +V+ +P+++S L +L R M V R + M
Sbjct: 583 QPPGL-FTAVLPRPVKASHLHDALMTCLAQDLISARPMPVTPAPATRERSVFNTRPGEQM 641
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938
LR IL+V+DN N K+A L+R G G++ L+ ++D MD
Sbjct: 642 PLR-------ILLVEDNPTNQKLALLVLERLGYPADTANNGREGLSLIS-RKRYDVVLMD 693
Query: 939 IQMPEMDGYE 948
+QMPE+DG +
Sbjct: 694 VQMPELDGLQ 703
>gi|88813512|ref|ZP_01128746.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal:Hpt
[Nitrococcus mobilis Nb-231]
gi|88789225|gb|EAR20358.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal:Hpt
[Nitrococcus mobilis Nb-231]
Length = 715
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 167/541 (30%), Positives = 269/541 (49%), Gaps = 71/541 (13%)
Query: 412 RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQ 471
RI +++ + K+ A+AA VAK FLA +SHEIRTPMN ++GM ++++DT+L TQ
Sbjct: 39 RIQDLKKAGEELRHAKEAAQAASVAKGNFLANMSHEIRTPMNAIIGMTELVLDTDLTDTQ 98
Query: 472 QDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKG 531
++Y+ + +G +L+SL+N++LD +K+E+GKLELE+ F LR L D + + ++ KG
Sbjct: 99 REYLAMVREAGNSLLSLLNDILDFSKIEAGKLELESHVFGLRERLGDAMKSLAFRAHGKG 158
Query: 532 VELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVET 591
+ELA ++ VP+ L+GD R RQI+ NL+GN+IKFT +G + + V
Sbjct: 159 IELACHVHPEVPDALLGDASRLRQIVVNLVGNAIKFTTQGEVVLDV-------------- 204
Query: 592 ELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLE 651
++S + + NL +V DTG GIP +
Sbjct: 205 ----------------------------------AYESPTNNAANLHFTVTDTGIGIPTD 230
Query: 652 AQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711
IF F Q S +R GGTG+GL+IS LV M G I S GS F FT F
Sbjct: 231 KLESIFDSFEQADMSTTRQFGGTGLGLAISSRLVKLMGGRIWAESELGCGSDFHFTMKFS 290
Query: 712 NGSSTSNEHNSQQMNNQ-PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEV 767
+ E +Q + P++V +AL+VD + + G+Q V
Sbjct: 291 LAAERPAE--AQPLEAVFPDNV-------RALIVDDNATNRLILNEMLGNWGMQATSVAA 341
Query: 768 VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
V++ L L + + +++ + + +D +++ G +L +L S
Sbjct: 342 VAEGLAALRTAYAARRPFRLVITDCHMPGED---GFDLAEKIKQDGQLSDIQLVML-TSG 397
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
S + + + + ++KP++ S L ++ A+G+ + E P ++ L R
Sbjct: 398 SEPGDIAHCEQLGVVAHLLKPVKQSELFDAIGSALGL----QVAEEEAPLDEVQQLKALR 453
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
IL+ +D+ VN K+A A LK++G VV GK+A + +FD MD+QMPEMDG
Sbjct: 454 -ILLAEDSIVNQKLALALLKKHGHDVVVANNGKEAVAVF-DRDRFDLVLMDVQMPEMDGL 511
Query: 948 E 948
E
Sbjct: 512 E 512
>gi|158339053|ref|YP_001520230.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
gi|158309294|gb|ABW30911.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
Length = 1038
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 170/559 (30%), Positives = 281/559 (50%), Gaps = 71/559 (12%)
Query: 402 VGHIFQATVNRIAKVEEDYHGMM-EL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
+G + + ++ + +++ GM+ EL K +AEAA+ AKSQFLA +SHEIRTPMN V+G
Sbjct: 251 IGQLKDSMISLLKTRQQELEGMVSELQAAKHEAEAANQAKSQFLANMSHEIRTPMNAVIG 310
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
M +L++T L+ QQD+V T ++SG AL++LIN++LD +K+E+GKL+LE F +R ++
Sbjct: 311 MTGLLLNTPLEAQQQDFVETIRSSGDALLTLINDILDFSKIEAGKLDLEQQPFEIRTCIE 370
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
+ L + + K+ +K +ELA I+ P ++GD R RQ++ NL+ N++KFT +G V V
Sbjct: 371 EALLIVASKASEKNLELAYLINPPTPTAILGDITRLRQVLVNLLNNALKFTGEGE--VVV 428
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 637
Y+ + ++S +++ E +P++ +
Sbjct: 429 YVSSKPIESKDLDAE-----------------------SDLEVIAEATPYE--------I 457
Query: 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697
V+DTG GIP + R+F F QV S +R GGTG+GL+ISK L M G+I S
Sbjct: 458 QFDVKDTGIGIPPDKLERLFKSFSQVDASTTRKFGGTGLGLAISKQLSELMGGKIWVSSE 517
Query: 698 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS------EFQGMKALVVDPRPIRA 751
++GSTF+FT T++E PN VS + G + L+VD
Sbjct: 518 VSVGSTFSFTI-------TASEI--------PNYVSPKAASDVQLAGKQLLIVDDNATNR 562
Query: 752 KVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK 811
++ Q G+ V ++ L + G ++ +++ ++ E D +R
Sbjct: 563 EILSLQAQSWGMLTCAVKSGIKALEWLQRGVN-FDLAVLDMQMPEMD---GVTLAEKIRA 618
Query: 812 LGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 871
G L +L+ S+ ++ +++ KP++ + L + L + +G I+
Sbjct: 619 EPNGKTLPLVVLS-SLGQDDIRARAGDINFSAILNKPVQQAQLQSVLAQVLG---NPLIK 674
Query: 872 NWELPSMSLRHLLLGR----KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 927
+ P + LG +IL+ +D VN KVA LK+ G G + E L
Sbjct: 675 VEQAPDVQENPTNLGDQHPLRILLAEDMVVNQKVALLTLKQLGYRADVANNGLEVIEAL- 733
Query: 928 PPHQFDACFMDIQMPEMDG 946
+D MD+QMPEMDG
Sbjct: 734 ERQAYDVVLMDVQMPEMDG 752
>gi|302035962|ref|YP_003796284.1| putative histidine kinase [Candidatus Nitrospira defluvii]
gi|300604026|emb|CBK40358.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
Length = 1610
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 165/542 (30%), Positives = 260/542 (47%), Gaps = 81/542 (14%)
Query: 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 480
H + E + +A A K+ FLAT+SHEIRTPMN ++GM +L+DT L Q ++ + +
Sbjct: 1067 HALAEARDEALRAAQVKADFLATMSHEIRTPMNAIIGMTGLLLDTALTKEQHEFADSVRR 1126
Query: 481 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 540
S L++L+N++LD +K+E+GKL E + F+LR ++D + L + ++Q KG+EL +
Sbjct: 1127 SSDGLLTLLNDILDFSKIEAGKLHFEQLPFDLRMTVEDTVELLAEQAQSKGLELIGLVDA 1186
Query: 541 RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 600
VP ++GDPGR RQI+ NL+GN+IKFT G +F+ V ++ T
Sbjct: 1187 AVPTAVVGDPGRLRQILVNLVGNAIKFTAAGEVFLHV------------------TRETQ 1228
Query: 601 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660
G DL+ +++DTG GIP Q R+F F
Sbjct: 1229 GGL-----------------------------DLLRF--TIKDTGIGIPEAVQGRLFHAF 1257
Query: 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 720
+Q S +R GGTG+GL+I + LV +M G+IG S GSTF FTA F +
Sbjct: 1258 VQADSSTTRRFGGTGLGLAICQRLVSQMHGQIGVESHSGQGSTFWFTAQFPETT------ 1311
Query: 721 NSQQMNNQPNSVS-SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC--LSQ 777
+ P+ S S +G + L+VD + R + G+ V + L++
Sbjct: 1312 ----LATAPSPFSWSRLRGRRILLVDHCDTVRQAMRQELTSHGMNCTVAQSGPEAVELAR 1367
Query: 778 IASGSK-IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTST 836
A+ S+ ++ L+E + + D L K G ++ ++ +
Sbjct: 1368 TAAASQNPFDLALIELHLSDMD----GFETAALLKQGPATAGIRLIILTTVGRRGDGQTA 1423
Query: 837 DGVSIPSVIMKPLRSSMLAASLQRAMGV-GNKGNIRNWELPSMSLRHLL----LGRK--I 889
+ I + + KPLR + L L + G N E P++ RH L G K +
Sbjct: 1424 RSIGIDAYLTKPLRQAQLLECLCLLLAPESTAGTPPNAEPPALITRHTLSESQAGPKPRL 1483
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ---FDACFMDIQMPEMDG 946
L+ +DN VN KVA L++ G V G++A + H+ + MD QMPE+DG
Sbjct: 1484 LLAEDNPVNQKVACKMLEKLGYRVDVAGNGQEA----VAAHERSRYPLILMDCQMPEVDG 1539
Query: 947 YE 948
+E
Sbjct: 1540 FE 1541
>gi|428777290|ref|YP_007169077.1| multi-sensor hybrid histidine kinase [Halothece sp. PCC 7418]
gi|428691569|gb|AFZ44863.1| multi-sensor hybrid histidine kinase [Halothece sp. PCC 7418]
Length = 1478
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 172/556 (30%), Positives = 256/556 (46%), Gaps = 84/556 (15%)
Query: 403 GHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 462
G++ + I + +E + K+ AE A KS+FLAT+SHEIRTP+NGV+GML +L
Sbjct: 814 GNLIYSAAREITERKEVEAELRAAKETAEMAAQTKSEFLATMSHEIRTPINGVIGMLHLL 873
Query: 463 MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 522
DTEL Q+ + AQ+S +L+ +IN++LD +KV+SG L+LE V F+L A+L+D
Sbjct: 874 QDTELTFQQRSQLEIAQSSATSLLGIINDILDFSKVDSGNLKLETVEFDLIALLEDFAKT 933
Query: 523 FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 582
+ +Q+K +EL + +S + GDP R RQI TNL+ N+IKFT+ G I + YL
Sbjct: 934 MALPAQEKDLELILDVSQIQQPVVKGDPSRLRQIFTNLVSNAIKFTQAGEILIKCYL--- 990
Query: 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 642
+ + + LI V+
Sbjct: 991 ----------------------------------------------ETVGEQLRLIGIVK 1004
Query: 643 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 702
DTG GIP + Q +F PF Q S +R +GGTG+GL+I K L M G I S + GS
Sbjct: 1005 DTGMGIPEDKQGSLFDPFTQADASTTRQYGGTGLGLAIVKRLCDLMDGAIALESKLDEGS 1064
Query: 703 TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 762
FTFT ++ QP +++ + QG+ LVV + +Q G
Sbjct: 1065 CFTFTVTLEASTA------------QP-TLTRDLQGLSILVVAENGATQQALSRQLQAWG 1111
Query: 763 IQVEVVSDQLQCL---SQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLR---KLGCGF 816
V SD L SQ IL D+++ L V +L +
Sbjct: 1112 ATVSTASDSATALSLCSQFRETPPFAIAIL--------DSNLPDLEVQDLIQQWQADSRL 1163
Query: 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL----QRAMGVGNKGNIRN 872
QS ++ +I+ + S + + + + KP+ S L L + + +
Sbjct: 1164 QSMAIVMMMAINQVNQSHSLTHLGMRATVTKPVVPSQLWQVLTQLSENQTTLTQPVSTSQ 1223
Query: 873 WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF 932
+PS L+ +L+V+DN VN V LK+Y V G +A +L H +
Sbjct: 1224 TVIPSPQLKS---NSCVLVVEDNRVNQLVIQGMLKKYPLQVQIAHDGLEALVMLQKSH-Y 1279
Query: 933 DACFMDIQMPEMDGYE 948
D FMD QMP MDGYE
Sbjct: 1280 DLVFMDCQMPNMDGYE 1295
>gi|33415350|gb|AAQ18202.1| hypothetical protein csv012 [uncultured bacterium]
Length = 1248
Score = 229 bits (583), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 174/542 (32%), Positives = 262/542 (48%), Gaps = 70/542 (12%)
Query: 419 DYHGM-MELKKK---AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
D HG +EL++ AEAA AKSQF+A +SHEIRTPMNG+LGM ++L+ T L+ Q+ +
Sbjct: 657 DEHGQALELQRARDLAEAASQAKSQFMANMSHEIRTPMNGILGMTELLLGTPLNDKQRRF 716
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
+ SG++L+ +IN++LD AK+E+G+LEL F LR +++D L L + ++ +KG+EL
Sbjct: 717 AQAVYRSGESLLEIINDILDFAKIEAGRLELATCDFVLRTLVEDTLELMAPRAHEKGLEL 776
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ +P + GDP R RQI+TNL+ N+IKFTE G I V ++ +I EL
Sbjct: 777 SFREQPGLPSVIHGDPLRLRQILTNLVANAIKFTEHGEIVV------DIRRAIGGAVELP 830
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
K S + + L V DTG GIP E
Sbjct: 831 ---------------------------------KPGSLETMELEFMVRDTGIGIPAEVVP 857
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
R+F+ F+Q ++R +GGTG+GL+ISK LV M G+I S P +GS F F G+
Sbjct: 858 RLFSAFVQANGGMARRYGGTGLGLAISKQLVELMGGQIEVNSAPGVGSEFLFRVPVCIGT 917
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 774
+ ++ M +P+ S LVVD V + G+ V D +
Sbjct: 918 TQAD----MAMLEEPDMPS-----FNVLVVDDNDTNRTVIENMLTAWGMHVVQAIDGREA 968
Query: 775 LSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
L+ + S ++ LV+ + D +R G K+ LL+ S+SS
Sbjct: 969 LNVLMAHPSQDAPFDLALVDMNMPNLD---GMGLAEAVRTSGRYPLLKMILLS-SVSSPD 1024
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILI 891
V + KPLR + L ++ +G+ + E ++ + +L+
Sbjct: 1025 DVRRAQDVGFQRFVAKPLRKAELRQAI---LGISAERGDNAQEARRIN-------KAVLV 1074
Query: 892 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLP 951
++DN VN +V + LKR G V + L +FD MDIQMP MDG E L
Sbjct: 1075 IEDNTVNQEVCSQMLKRLGCEVRVASSALEGLRRLG-EQRFDLILMDIQMPGMDGVEALG 1133
Query: 952 CF 953
F
Sbjct: 1134 WF 1135
>gi|451820687|ref|YP_007456888.1| putative sensor histidine kinase/response regulator hybrid
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451786666|gb|AGF57634.1| putative sensor histidine kinase/response regulator hybrid
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 949
Score = 229 bits (583), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 168/531 (31%), Positives = 259/531 (48%), Gaps = 68/531 (12%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+++ K++AEAA+VAKSQFLA +SHEIRTPMNG+ G L++L TEL + Q++++R A+++
Sbjct: 313 LLKAKEQAEAANVAKSQFLANMSHEIRTPMNGIFGFLELLQTTELSLEQEEFIREAKSAS 372
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
+ L+ +IN++LD +K+E+ KL +E++ FNLR ++D +SL S K+ +KG+E+ V I D V
Sbjct: 373 EILLYIINDILDFSKIEAKKLVMESIKFNLRTTIEDAVSLLSHKAVEKGLEIYVMIKDGV 432
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
PE +IGDP R RQI+ NL+ N++KFTE G I V+V E+ D + E+ K+T G
Sbjct: 433 PEEVIGDPSRIRQILNNLISNAVKFTESGDISVSVDYEEKENDMANLYFEV---KDTGIG 489
Query: 603 YPVADRCHSWKGFKTFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
D H K F++FNQ D ST
Sbjct: 490 IRKED-IH--KLFQSFNQADAST------------------------------------- 509
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
+R +GGTG+GL+IS LV M GE+ S GSTF F +S
Sbjct: 510 ------TRKYGGTGLGLAISSELVKMMDGEMNVESEFGKGSTFKFNVNLKIAKRSS---- 559
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
+P + +G+ LVVD + + + I + D ++ +
Sbjct: 560 ------EPKFDLEKLKGVNILVVDGNDNNRESIKSYFHGADINLFEAKDAGDAITTVIKN 613
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS--ISSSRANTSTDGV 839
S N I V + + L+ + KL LL +S I S+A
Sbjct: 614 SNSKNKIDVAIVDYRMSDMTAYELATTLKSIPIAKDIKLILLTSSAKIVDSKA---AKEY 670
Query: 840 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL--LGRKILIVDDNNV 897
S + KP+R L + + +G+ + +++ + L KIL+V+DN +
Sbjct: 671 GFSSYLSKPIRKDDLISCIAILLGLEEDHEEEQEVVIKHTVKEIKHSLKPKILLVEDNEI 730
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
N K+ LK G +A + ++ +D FMD QMP MDGYE
Sbjct: 731 NRKIVIGILKSREMTCDIAVNGSEAVKAVL-ERDYDVVFMDCQMPVMDGYE 780
>gi|75907786|ref|YP_322082.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
gi|75701511|gb|ABA21187.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
Length = 1550
Score = 229 bits (583), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 171/547 (31%), Positives = 260/547 (47%), Gaps = 91/547 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+ +AE A AKS FLA +SHEIRTPMN VLGM ++++T L+ Q+D++ T + SG AL+
Sbjct: 881 RSQAELASHAKSAFLANMSHEIRTPMNAVLGMTGLMLETLLNQEQRDFMETIRISGDALL 940
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+LINE+LD +K+E+G++ LE ++FNL +++VL L + ++ KG+E+A I VP L
Sbjct: 941 TLINEILDLSKLEAGEMALENLNFNLSTCVEEVLDLLAPQAHSKGLEIAALIYRHVPIQL 1000
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD R RQI+ NL+GN+IKFT G EVV +E+ +E P
Sbjct: 1001 QGDASRLRQILMNLIGNAIKFTSFG----------EVVMRVELRSE----------TPTT 1040
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
H +V D+G GI LE Q ++FTPF QV S
Sbjct: 1041 AIIH----------------------------FAVTDSGLGITLEDQHKLFTPFTQVDAS 1072
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG-SSTSNEHNSQQM 725
+R +GGTG+GL+I K LV M GEIG S GS F F F S + +
Sbjct: 1073 TTRKYGGTGLGLAICKQLVTLMGGEIGVESQLGKGSKFWFEIPFAKQLQPVSFVEDCGLL 1132
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---S 782
NN+ + LVVD K+ + + R G+QV+ + L I +
Sbjct: 1133 NNR-----------RLLVVDDHATNRKIIYHQVSRWGMQVDQADRAVAALGMIVEACQQN 1181
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
K ++IL++ ++ E D + + K ++ S + +
Sbjct: 1182 KPYDVILIDMQMPEMD----GMALGKQIKANSAIPPTPLIMLTSTNQRDEVQQAIKIGFA 1237
Query: 843 SVIMKPLRSSMLAASLQRAMGV-----GNKGNIRNWELPSMSLRH--------------L 883
+ ++KP++SS L ++ + K +++ EL +L H +
Sbjct: 1238 AYLVKPVKSSRLLDTIMSVLKTPSQLEAEKLEVKSQELEKNNLDHSRNRNFTATQAQNSV 1297
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQM 941
+IL+ +DN VN KVA L+ G GK+ +LL +P +D MD QM
Sbjct: 1298 STKTRILLAEDNLVNQKVALKQLQSLGYTADVAANGKEVLQLLKQIP---YDLILMDCQM 1354
Query: 942 PEMDGYE 948
P +DG E
Sbjct: 1355 PILDGLE 1361
>gi|303246259|ref|ZP_07332539.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
gi|302492322|gb|EFL52194.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
Length = 992
Score = 229 bits (583), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 165/561 (29%), Positives = 268/561 (47%), Gaps = 72/561 (12%)
Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
AK+ + + L + A+AAD AKS+FLA +SHEIRTP+N V+GM +L+ T L Q+D
Sbjct: 236 AKLRDSLDESIRLAELAKAADKAKSEFLARMSHEIRTPLNAVIGMSHLLLKTRLTPKQED 295
Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
Y+ ++S L+ +IN++LD +K+E+G L +E + F+L +L DV+++ S + +K +E
Sbjct: 296 YLAKIRSSADTLLRVINDILDFSKIEAGGLTIERIPFDLETVLGDVVNIMSLGAAEKQLE 355
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
+ + D VP L+GDP R Q++ NL+GN++KFTE G + +EV +
Sbjct: 356 FLLSVEDDVPFGLVGDPLRLGQVLLNLVGNAVKFTESGEVL------------LEVRRQP 403
Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
S+S+N L +V DTG G+ E Q
Sbjct: 404 STSQNA------------------------------------RLRFAVRDTGVGLTAEQQ 427
Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
+F PF Q SISR +GGTG+GLSIS+ LV M G++ S+P GS F F
Sbjct: 428 EGLFRPFSQADESISRRYGGTGLGLSISQRLVALMGGDLEVRSVPGEGSEFFF------- 480
Query: 714 SSTSNEHNSQQMNNQP-NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 772
S + ++ +P S ++ GM +VVD P ++ ++ + V +
Sbjct: 481 ---SLDLPLSEVRAKPFQSDAAALAGMGIMVVDDNPTSLRILADMLRSMRFSVTTATGGE 537
Query: 773 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL-ANSISSSR 831
+ L + + ++L++ W+ +R L + ++ A R
Sbjct: 538 EALRLLEGAESDVRIVLLD---WKMPGMDGMECARRIRALALPRPPAVIIVTAYGREEIR 594
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILI 891
N GV ++KP+ S+L ++ +G + L +L GR++L+
Sbjct: 595 HNAENAGVD--GFLLKPVGRSVLFDTIAMTVGPADMLKTGGAAGEREPLPEVLRGRRVLV 652
Query: 892 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEML- 950
V+DN +N +VA L++ G +V G+ A LL ++ A MD+QMP MDG E
Sbjct: 653 VEDNAINQQVARELLEQAGLSVDVAGDGEHALRLLA-RERYAAVLMDVQMPVMDGLETAR 711
Query: 951 -----PCFESFLLIAILVWKL 966
P F +IA+ L
Sbjct: 712 RIRSDPAFADLPVIAMTAHAL 732
>gi|451947711|ref|YP_007468306.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
gi|451907059|gb|AGF78653.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
Length = 714
Score = 229 bits (583), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 167/537 (31%), Positives = 262/537 (48%), Gaps = 77/537 (14%)
Query: 425 ELKKK---AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K AE+A VAKS+FLA++SHEIRTPMNGV+G +ML+ TELD Q+D T + S
Sbjct: 182 ELRKAKVAAESASVAKSEFLASMSHEIRTPMNGVIGFTEMLLQTELDEEQRDSAETIKRS 241
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
G+AL+ LIN++LD +KVE+G++ LE + F+ DV L + K +E+ I D
Sbjct: 242 GEALLGLINDILDFSKVEAGQMSLEYIDFDPEITAHDVCELVRPRVSGKPIEVLCKIDDN 301
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P + GDPGRFRQ++ NL+GNS KFTEKG + +T+ + EE +I++ + ++T
Sbjct: 302 LPANVCGDPGRFRQVLLNLLGNSAKFTEKGELELTINVEEEDDKNIKLHALI---RDTGI 358
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
G + +C S F+ F Q+ T+
Sbjct: 359 GID-SSKCESI--FEAFKQEDGTT------------------------------------ 379
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
+R +GGTG+GLSI + + M G + S GSTF FTA+ SS S
Sbjct: 380 ------TRKYGGTGLGLSICRKIASLMDGRVWVESTKGKGSTFHFTAMM-RKSSISRAKT 432
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
+Q++ +G + L+VD ++ + + GI+ + D+ Q ++ +
Sbjct: 433 LKQLD---------LEGTRMLIVDDNAANNEILVHLLNNAGIKTTALLDETQTMATLKEA 483
Query: 782 SKI-----INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTST 836
+ + +I ++ + +NL+ F LA + S+ +
Sbjct: 484 EECGAPFDLAIIDLQMPTITGFELARIIRESNLKSRDIPF------LAYTSSTEKIAKKC 537
Query: 837 DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE---LPSMSLRHLLLGR-KILIV 892
+ + KP R ++L +L R +G G E + S+R + +IL+V
Sbjct: 538 KDAGFTAFLNKPARRAILLRTLSRTLGTGGDEIDPAAEKKLVTQYSVREEIKQSIRILLV 597
Query: 893 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP-PHQFDACFMDIQMPEMDGYE 948
+DN VN K+A+ L + G V GK A ++ P FD MD+QMPEMDGYE
Sbjct: 598 EDNLVNQKLASMILTKAGYNVEVAANGKIAVDMFSSTPDLFDTILMDVQMPEMDGYE 654
>gi|428307527|ref|YP_007144352.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
gi|428249062|gb|AFZ14842.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
Length = 865
Score = 228 bits (582), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 166/527 (31%), Positives = 262/527 (49%), Gaps = 55/527 (10%)
Query: 424 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGK 483
+ L++ A A AKS+FLAT+SHEIRTPMNGV+GM +++++T+L QQ +V T + SG+
Sbjct: 173 LALREAALEATRAKSEFLATMSHEIRTPMNGVIGMTELMLNTKLTSQQQHFVETIRHSGE 232
Query: 484 ALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVP 543
AL+++IN++LD +K+ES KLELE FN+ L++ L + + K+ +K +ELA I P
Sbjct: 233 ALLTIINDILDFSKIESQKLELEKQPFNILNCLEESLDILAPKAAEKNLELAYIIQPNTP 292
Query: 544 ETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGY 603
+ LIGD R RQII NL+ N++KFT+ G + V++ +L + +N +
Sbjct: 293 KKLIGDVTRLRQIIINLLSNAVKFTKDGEVLVSI-----------TSHQLPAGEN-IEQN 340
Query: 604 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663
P C+ + +V+DTG GIP E R+F F QV
Sbjct: 341 PHLKNCYELQ-------------------------FAVKDTGIGIPTERMDRLFQSFSQV 375
Query: 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ 723
S +R +GGTG+GL+ISK L M G + S GS F FT + S ++ +Q
Sbjct: 376 DSSTTREYGGTGLGLAISKRLTELMGGRMWVESTVGQGSIFYFTII---APSVADGSLAQ 432
Query: 724 QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 783
+ N + + G + L+VD ++ Q G+ + + L ++ G K
Sbjct: 433 E-----NIIPPQLVGKQLLIVDDNATNREILMLQGQSWGMLTYAANSGAEALDLLSEG-K 486
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
+M +++ ++ E D +R L G + L +L+ S+ + D V +
Sbjct: 487 SFDMAILDMQMPEMD---GLTLAREIRGLPKGEKLPLVMLS-SLGKLEIGSEVDAVKFAA 542
Query: 844 VIMKPLRSSMLAASLQRAMGVGN-KGNIRNWELPSMSLRHLL---LGRKILIVDDNNVNL 899
+ KP++ S L +L + K RN S L L +IL+ +DN+VN
Sbjct: 543 FLYKPIKQSQLFNTLNDILAQQPIKVETRNCASLHTSFDSQLAKQLPLRILLAEDNSVNQ 602
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+VA L++ G G + E L +D MD+QMP MDG
Sbjct: 603 QVALYFLEQIGYLADVAANGLEVLEALQ-RQAYDVVLMDVQMPVMDG 648
>gi|339484541|ref|YP_004696327.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. Is79A3]
gi|338806686|gb|AEJ02928.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. Is79A3]
Length = 921
Score = 228 bits (582), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 172/544 (31%), Positives = 268/544 (49%), Gaps = 77/544 (14%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+VE+ ++ K+ AEAA AKS+FLAT+SHEIRTPMNG+LGM ++L+DT+LD Q +
Sbjct: 248 EVEKRTAELVLAKESAEAASKAKSEFLATMSHEIRTPMNGILGMTELLLDTQLDKDQHRF 307
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
T Q+SG+ L+ +IN++LD +K+ES +ELE + F+L +++D L++F+ + KG+EL
Sbjct: 308 AETVQSSGQHLLGIINDILDFSKIESDHMELETIDFDLVKLIEDTLTMFAQPADKKGLEL 367
Query: 535 -AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
A + L GD R RQII NL+ N+IKFTE+G I + L +D E T +
Sbjct: 368 IAQFTPPNTAFMLRGDSFRIRQIIANLLNNAIKFTEQGEIVIRTML----LDGSETLTRV 423
Query: 594 S-SSKNTLSGYPVADRCHSWKGFKTFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLE 651
S ++T G P + K F+ F+Q DGST
Sbjct: 424 SICVEDTGIGIP---PVYHEKIFQNFSQADGST--------------------------- 453
Query: 652 AQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711
+R +GGTG+GL+I K L+ M+G I S P GS F
Sbjct: 454 ----------------TRQYGGTGLGLTICKKLLELMEGSIHVESSPGHGSKFWINLRL- 496
Query: 712 NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 771
E + Q +N P+ ++ +G++ALVVD ++ + +Q I VE D
Sbjct: 497 -------EKSKLQHSNFPD--MTKLRGVRALVVDDNQTNREILKLQLQNWQINVECAEDA 547
Query: 772 LQCL---SQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC--GFQSKLFLLANS 826
Q L +Q + +K ++++++ + + D + RK+ F ++ S
Sbjct: 548 QQALAYMTQAVAENKSFHLVILDMHMPQMDG------LQLARKIHAHPDFSKTRMMMLTS 601
Query: 827 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL-- 884
S+ + I + KP+R L + MG + N E +S+ L
Sbjct: 602 TYSNASQLERQNTGILRCVNKPVRQKELLDIIIDVMGRDLDNHATNPEFEKVSVSTLTQS 661
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
K+L+ +DN VN +VA A L + G V G++A L+ +Q+D MD QMP M
Sbjct: 662 FHGKVLLAEDNPVNQEVAKAMLAKLGLDTVIAHDGQQAL-YLIQNNQYDLILMDCQMPNM 720
Query: 945 DGYE 948
DG+E
Sbjct: 721 DGFE 724
Score = 43.9 bits (102), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 867 KGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA---- 922
K +++ P M+ L G + L+VDDN N ++ L+ + V C E ++A
Sbjct: 498 KSKLQHSNFPDMTK---LRGVRALVVDDNQTNREILKLQLQNWQINVECAEDAQQALAYM 554
Query: 923 TELLMPPHQFDACFMDIQMPEMDGYEM 949
T+ + F +D+ MP+MDG ++
Sbjct: 555 TQAVAENKSFHLVILDMHMPQMDGLQL 581
>gi|428215820|ref|YP_007088964.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428004201|gb|AFY85044.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1860
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 164/523 (31%), Positives = 261/523 (49%), Gaps = 64/523 (12%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KS+FLAT+SHEIRTPMN V+GM +L+DT L+ Q+++V T + SG L+++IN++LD +
Sbjct: 1155 KSEFLATMSHEIRTPMNAVIGMTGLLLDTPLNADQREFVETIRTSGDGLLTIINDILDFS 1214
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+ESGK++LE FNLR +++ L L + K+ +K +ELA ++ + PE +IGD R RQI
Sbjct: 1215 KIESGKMDLEEHPFNLRTCIEECLDLVASKAAEKQLELAYLLAPQTPEGIIGDVTRLRQI 1274
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+ NL+ N++KFT++G V V
Sbjct: 1275 LVNLLSNAVKFTQEGETIVAVN-------------------------------------G 1297
Query: 617 TFNQDGS-TSPFKSSS-ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674
TF QD +P +++ + + SV+DTG GIP + R+F F QV S +R +GGT
Sbjct: 1298 TFVQDAQFGNPMATATEGGVYQIHFSVKDTGVGIPPDRMDRLFKSFSQVDSSTTRKYGGT 1357
Query: 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS 734
G+GL+I+K L M G + S +GSTF FT ++TS ++ + P
Sbjct: 1358 GLGLAIAKRLSELMGGTMWVESQVGVGSTFHFTI---QATATSEFASATPEDEVP----- 1409
Query: 735 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI-INMILVEQE 793
+ G L+VD + Q G+ + + L+Q+ + ++ +++ +
Sbjct: 1410 QLTGKHLLIVDDNATNRLILTRQAQSWGMIPYAAASGPEGLAQLQETADTRFDLAILDMQ 1469
Query: 794 VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 853
+ E D +R+L G + L +L S+ + G+ + + KP++ S
Sbjct: 1470 MPEMD---GLALAAAIRQLPGGDRLPLIML-TSLGWQPVSREAAGIDFAAFLSKPIKQSQ 1525
Query: 854 LAASLQRAMGV----GNKGNIRNWELPSMSLRHLLLGR----KILIVDDNNVNLKVAAAG 905
L L +G+ N+ + R +PS + + L KIL+ +DN VN KVA
Sbjct: 1526 LFDIL---IGIFSRRSNRKDSRVHRVPSFPKQSIPLKSDRPLKILLAEDNVVNQKVALRI 1582
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L+R G G +A L +D MD+QMPEMDG E
Sbjct: 1583 LERMGYRADVASNGLEAIAALN-RQSYDVILMDVQMPEMDGLE 1624
>gi|254784466|ref|YP_003071894.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
T7901]
gi|237686265|gb|ACR13529.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
T7901]
Length = 781
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 163/531 (30%), Positives = 259/531 (48%), Gaps = 81/531 (15%)
Query: 428 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 487
++ +AA+ AKSQF+AT+SHEIRTPMNGV+GM++ML DT L+ +Q+ Y+ SG++L+
Sbjct: 258 ERVKAANQAKSQFIATMSHEIRTPMNGVIGMIEMLRDTPLNDSQKHYLDVIFRSGESLLE 317
Query: 488 LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 547
+IN++LD +K+E+GK+ LE V F+L +L+D + LFS + + +E IS P L
Sbjct: 318 IINDILDYSKIEAGKMNLENVDFDLNELLNDCVQLFSATTHKRDIEFVCAISPETPTQLR 377
Query: 548 GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 607
GDP R RQI+ NL+GN+ KFT GH+ V V S ++ S +P+
Sbjct: 378 GDPTRLRQIVVNLIGNAFKFTSNGHVMVLV----------------KSLQDRTSEHPL-- 419
Query: 608 RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667
L S+ D+G GI E Q +F F Q S
Sbjct: 420 -----------------------------LRFSIVDSGIGISKEIQRNLFQAFNQADTST 450
Query: 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 727
+R +GGTG+GL+I K L M G IG S GSTF FT F +
Sbjct: 451 TRRYGGTGLGLAICKQLAELMGGTIGVESEYGKGSTFWFTIRFD---------LPEDRQR 501
Query: 728 QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS--KII 785
QP S S G + L + P+ + + ++ VS L ++ + + +I
Sbjct: 502 QPPSSSLALSGKRILAIHSSPVLVTAFADNCEGYNMKCHHVSKASDALKRLTNQTPDQIY 561
Query: 786 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 845
+ + ++Q + +D ++R++ ++ + +L + ++ T + I S++
Sbjct: 562 DFLFLDQRIDGED---GFALAQSIREIPAYAETPILMLTHERTTKF--TMEQLMPITSIL 616
Query: 846 MKP-----LRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK--ILIVDDNNVN 898
+P LR+++LA S A+ EL SM + + +K +L+ +DN VN
Sbjct: 617 PRPLTAHGLRTALLAQSTGVALN----------ELISMESKAIAPAQKLNVLVAEDNAVN 666
Query: 899 LKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFMDIQMPEMDGYE 948
V L ++ V E G++A T +FD FMD +MP MDG+E
Sbjct: 667 RMVIEGLLNKHEIEPVFAEDGQEAVTAFETASPRFDLIFMDCEMPNMDGFE 717
>gi|375149632|ref|YP_005012073.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
gi|361063678|gb|AEW02670.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
Length = 1329
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 160/552 (28%), Positives = 272/552 (49%), Gaps = 77/552 (13%)
Query: 406 FQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT 465
F AT+ + ++ +++ K AE+A+ AKS+F+A +SHE+RTPMNG++G D+++ T
Sbjct: 783 FAATLAAAIERKQMEQELVQAKDMAESANQAKSEFMANMSHELRTPMNGIIGFTDLVLTT 842
Query: 466 ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 525
L +Q+DY+ + S L+ +IN++LD +K+E+GKL+++ SF + ++++ + + S
Sbjct: 843 NLQHSQRDYLENVKKSAYGLLDIINDILDFSKLEAGKLQIDNTSFRIDELVEEAIDILSV 902
Query: 526 KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 585
K+ +K +E+ +I +P + GDP R RQ+ NL+GN+IKFT+KG IFV++
Sbjct: 903 KAFEKRLEMVCHIDPLLPSRVSGDPVRIRQVFVNLLGNAIKFTQKGEIFVSLK------- 955
Query: 586 SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 645
K + +DG I++ +SV DTG
Sbjct: 956 ---------------------------KAGNMYVKDGKK---------FIDIDLSVRDTG 979
Query: 646 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 705
GIP E +IF F Q S +R +GGTG+GL+ISK L M G + S N GSTFT
Sbjct: 980 IGIPKEKLVKIFDSFTQADSSTTRKYGGTGLGLTISKSLAELMDGSLQVESETNRGSTFT 1039
Query: 706 FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGM-KALVVDP----RPIRAKVSRYHIQR 760
+ +N +P + + K LVVD R + ++ RY
Sbjct: 1040 LKLPL------------EIVNIEPQITGAYRPPLTKVLVVDDNASNRWLMQEIFRY---- 1083
Query: 761 LGIQVEVV---SDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817
I E + L L++I S+ +++I+ + + E D V +R+ G+
Sbjct: 1084 FSIACETAHNGREALAILNRIHQNSEPLDLIITDHHMPEMD---GMQLVQEMRRSSQGYT 1140
Query: 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 877
+ ++ +S+ + + + I + KP++ L A+L G + + +P
Sbjct: 1141 PPVIMMLSSLEKNMFQRQAEKLGIHGFLSKPVKLYELYATLSAMFTTGKQQPEKISTIP- 1199
Query: 878 MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA--C 935
+ + I++V+D +N+ + L + G AV+ GK+A ELL Q D
Sbjct: 1200 -VIEKITDAATIMVVEDEPINMLLITEVLGKMGFAVIKATNGKQALELL---QQQDPQLI 1255
Query: 936 FMDIQMPEMDGY 947
FMD+ MPEMDG+
Sbjct: 1256 FMDVNMPEMDGF 1267
>gi|71906576|ref|YP_284163.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase A, N-terminal:Hpt
[Dechloromonas aromatica RCB]
gi|71846197|gb|AAZ45693.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal:Hpt
[Dechloromonas aromatica RCB]
Length = 852
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 180/643 (27%), Positives = 304/643 (47%), Gaps = 102/643 (15%)
Query: 336 YDITNLSHPISMYGSNVSDDGLWLVST---LNFGDPFRKHEMRCRFKQKAP---WPLLAI 389
Y +L + I+ + V D L L+ T + + + CRFK + W LL
Sbjct: 94 YADGDLDNSIAQWQRMVHPDDLRLLQTRIEAHIQNQDSHFQAECRFKARDGQWRWFLLR- 152
Query: 390 STSIGILVIASLVGHIFQATV--NRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHE 447
G + + G + V I+ V+ ++ K+ AE+A+ A+ FLA +SHE
Sbjct: 153 ----GAVAARNAEGKPARVLVLQRDISDVKAAESALISAKEVAESANKARGAFLANMSHE 208
Query: 448 IRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEA 507
IRTPMNG++GM ++ +DT+LD Q+ Y++T ++S +AL++++N++LD +K+E+GK+E E+
Sbjct: 209 IRTPMNGIIGMTELALDTQLDAEQRHYLKTVKSSAEALLTIVNDILDFSKIEAGKMEFES 268
Query: 508 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKF 567
+ F+++ + + + + + + KG+EL + VP ++GDP R RQ+I NL+GN+IKF
Sbjct: 269 LVFSMQDTVLEAVRVLAVSAHKKGLELVADVRPEVPARIVGDPTRLRQVIINLIGNAIKF 328
Query: 568 TEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPF 627
TE+G + +++VE + S+ ++
Sbjct: 329 TERGEV------------ALKVEVDQSTERS----------------------------- 347
Query: 628 KSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGR 687
+ L S+ DTG G+P + Q IF F Q S +R GGTG+GL+IS LV
Sbjct: 348 -------VYLRFSIRDTGIGVPADKQQAIFEAFSQADVSTTRRFGGTGLGLAISARLVQL 400
Query: 688 MKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPR 747
M G+I S P GS F+FT FG +TS + F G + LV++
Sbjct: 401 MDGKIWLESTPGQGSVFSFTGRFGVQEATS-----------VRPFEARFGGRRVLVIED- 448
Query: 748 PIRAKVSRYHI---QRLGIQVEVVSDQLQCLSQIASGSKI---INMILVEQEVWEKDTSV 801
A V +Y + ++LG+QV +V+D ++ + + + +L + + D
Sbjct: 449 --NATVGQYLVELLEQLGVQVSLVADGAAAVAAMERSRAMDFPYDYVLADANM---DAPA 503
Query: 802 STLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 861
+ G KL ++ + + + + + + ++KP+ + L +L A
Sbjct: 504 GFALAEAWGR--SGRVEKLIVMLTTENQRHDLSRLREIGVSAHLVKPIGGADLIDALALA 561
Query: 862 MGVGNKGNIRNWELPSMSLRHLLL---------GRKILIVDDNNVNLKVAAAGLKRYGAA 912
G GN+ EL +L + G IL+V+DN VN ++A L+R
Sbjct: 562 DGPGNQ------ELSEFALSEINFDGVAKEDSSGLNILLVEDNPVNQELATRLLERQSHR 615
Query: 913 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFES 955
V G +A +L H FD MD+QMP M G E S
Sbjct: 616 VSLANNGAEAVDLFDSGH-FDVILMDMQMPVMGGIEATEAIRS 657
>gi|345869886|ref|ZP_08821842.1| integral membrane sensor hybrid histidine kinase [Thiorhodococcus
drewsii AZ1]
gi|343922748|gb|EGV33447.1| integral membrane sensor hybrid histidine kinase [Thiorhodococcus
drewsii AZ1]
Length = 779
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 178/555 (32%), Positives = 265/555 (47%), Gaps = 91/555 (16%)
Query: 406 FQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT 465
F + +I +ED + + + AEA +AKSQFLA++SHEIRTPMNG++GM ++L T
Sbjct: 242 FNGMLEQIQLRDED---LRQARDAAEAGSLAKSQFLASMSHEIRTPMNGIIGMAELLWGT 298
Query: 466 ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 525
+LD Q+ +VRT Q S ++L+ +I++VLD +K+E+G+LELE V F+L A++ L S
Sbjct: 299 QLDERQRHFVRTVQVSAESLLGIISDVLDFSKIEAGRLELEHVEFDLHALMGRTSDLLSE 358
Query: 526 KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 585
++ KG+EL IS ++GDPGR RQI+ NL+ N++KFTE G++ +++ +EE
Sbjct: 359 TARRKGLELMTRISPHCSSRVMGDPGRLRQILMNLVSNAVKFTETGYVQLSLSCLEETEH 418
Query: 586 SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 645
+ V ++V DTG
Sbjct: 419 EVRVR------------------------------------------------IAVRDTG 430
Query: 646 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 705
G+ E QSRIF F Q S SR +GGTG+GL+I+K LV M G + S+P GS F
Sbjct: 431 IGLSPEEQSRIFDRFSQADSSTSRRYGGTGLGLAITKQLVDLMHGTLTLDSLPGHGSVFQ 490
Query: 706 FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRY--HIQRLGI 763
S S + Q +N +G++ L++D R +R LGI
Sbjct: 491 IELTL---SKASPGWSDQTLN---------LEGLRVLLIDGD--REGSARLIDDCATLGI 536
Query: 764 QVEVVSDQLQ----CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819
+V+ V D + L+ A G+ +L ++ D V + +L G
Sbjct: 537 EVQQVPDLGEAMELALTLAAGGNGFSLFVLDAAQLPSLDLPVGRVL-RDLVDQAMGA--- 592
Query: 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-----E 874
LL S+ + DG+ +MKP+ LA RA+GV G+ E
Sbjct: 593 -VLLCEHRSAGAKPSGWDGL---ECLMKPVECQALA----RALGVIIHGSPLGEDKAFPE 644
Query: 875 LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFD 933
L LG ++L+ +DN VN V + L G AV+C + EL +D
Sbjct: 645 LDRPGGEQPSLGLRVLVAEDNPVNQDVIESMLNALGCKAVLCADGQALLAEL--ARSDYD 702
Query: 934 ACFMDIQMPEMDGYE 948
MD QMP MDGYE
Sbjct: 703 LVLMDCQMPLMDGYE 717
>gi|451946365|ref|YP_007466960.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
gi|451905713|gb|AGF77307.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
Length = 932
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 159/528 (30%), Positives = 256/528 (48%), Gaps = 68/528 (12%)
Query: 426 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 485
L ++A+AA+ AKSQFLA +SHEIRTPMNG+LGM +M +DT+LD + + T +SG++L
Sbjct: 264 LAEQAQAANKAKSQFLANMSHEIRTPMNGILGMAEMALDTDLDKELRSSIETIMSSGESL 323
Query: 486 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 545
+++IN++LD +K+E+GKLELE ++FNL +++DV + + ++ KG+EL V + D +
Sbjct: 324 LTIINDILDFSKIEAGKLELETINFNLALLVEDVAQMLAYRAHAKGLELIVNVPDNISSY 383
Query: 546 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 605
+ GDP R RQ++ NL+GN+IKFT+ G I + + L+ E
Sbjct: 384 VSGDPSRLRQVLVNLLGNAIKFTDHGEILLQLTLLGET---------------------- 421
Query: 606 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665
D S L SV+DTG GI + +F PF Q
Sbjct: 422 ---------------DNEAS-----------LRFSVQDTGIGISEDEYETLFHPFSQADD 455
Query: 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 725
S +R +GGTG+GL+IS+ LV M GEI S P GS F S T +++
Sbjct: 456 STTRKYGGTGLGLAISRQLVELMGGEINCNSRPGGGSEFWMEVTLDKASGTEVVASTE-- 513
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGS 782
+ + ++A+++D ++ + ++ G+ S + L L Q +
Sbjct: 514 -------ADKLSNLRAIIIDDNATNRRLLEHQMEIWGVDHASASGGIEGLTLLYQAVADR 566
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
K ++ ++++++ D L V L Q ++ S+ I
Sbjct: 567 KPFDIAILDKDMPGMD----GLEVAALISKDPSLQGTRMVMLTSVGIRGDARLAHQAGIK 622
Query: 843 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR--HLLLGRKILIVDDNNVNLK 900
+ KP R L SL A+ ++ N + SL+ +L+ +DN N +
Sbjct: 623 IYLTKPTRQIDLYNSLV-ALMARDRFEDDNQLITHYSLQKNRATFDANVLVAEDNVTNQQ 681
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VA L++ G V + G++A + + FD MD QMP MDGYE
Sbjct: 682 VAMGVLRKLGCKVTLTKNGQEALQFF-EKNSFDIVLMDCQMPRMDGYE 728
>gi|409992461|ref|ZP_11275649.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
gi|291568252|dbj|BAI90524.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39]
gi|409936686|gb|EKN78162.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
Paraca]
Length = 1494
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 186/610 (30%), Positives = 286/610 (46%), Gaps = 107/610 (17%)
Query: 389 ISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEI 448
+++ +GI + + + + V +E + E K AE A AKS+FLAT+SHEI
Sbjct: 687 VASQVGITIAQA---KLLEVEVKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEI 743
Query: 449 RTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 508
RTPMN V+GM +L+D EL Q+D+V T + SG AL+++IN++LD +K+ESGKLELE
Sbjct: 744 RTPMNAVIGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQ 803
Query: 509 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT 568
F LR L++ L L SG++ +KG+ELA I P+T++GD R RQ++ NL+ N+IKFT
Sbjct: 804 PFKLRNCLEECLELLSGRAAEKGLELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFT 863
Query: 569 EKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFK 628
+G + + V A + K K F+ S F
Sbjct: 864 SEGEVILAVK---------------------------ATHPDAKKDVKKFDD----SDFT 892
Query: 629 SSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRM 688
S L V DTG GIP + R+F F QV S +R +GGTG+GL+IS+ L M
Sbjct: 893 ESH---YVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRLSQLM 949
Query: 689 KGEIGFVSIPNI-------------------------------GSTFTFTAVFGNGSSTS 717
G++ S N+ GS F FT V
Sbjct: 950 NGKMWVASWVNLLDEYHDETSSLISSVAGNPPPDFVRPQVFRPGSIFYFTIVCSGF---- 1005
Query: 718 NEHNSQQMNNQPN--SVSSEF-QGMKALVVDPRPIRAKVSRYHIQRLG---IQVEVVSDQ 771
N P+ S +F G K L+V+ I K+ ++ G ++V+ +D
Sbjct: 1006 ---------NTPDLGEFSDDFLHGKKVLIVEHHDINQKLLIRQVKSWGMVPVRVKTGADA 1056
Query: 772 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK--LGCGFQSKLFLLA----N 825
L+ L + +++I++ + + D + + L K + ++ K F L
Sbjct: 1057 LKVLHD----NPELDLIILGINLPDMDEATLASRIRQLEKQMIAGKYRQKPFNLVMFNYA 1112
Query: 826 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR----AMGVGNKGNIRNWEL---PSM 878
S + S GV++ ++ KPL+ S +L + + + +I+N E P++
Sbjct: 1113 SNTDSLRRLEAQGVNVAGLVNKPLKQSQFYNTLMQIFADSQTIEKHYHIKNAESGYDPAI 1172
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938
H L +IL+ +DN N KVA L+R G G + + L Q+D MD
Sbjct: 1173 PQPHANL--RILLAEDNVTNQKVAIKLLERLGYRADIAGNGLEVLDALN-RQQYDVILMD 1229
Query: 939 IQMPEMDGYE 948
+QMPEMDG E
Sbjct: 1230 VQMPEMDGLE 1239
>gi|390958996|ref|YP_006422753.1| PAS domain-containing protein [Terriglobus roseus DSM 18391]
gi|390413914|gb|AFL89418.1| PAS domain S-box [Terriglobus roseus DSM 18391]
Length = 1042
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 168/567 (29%), Positives = 283/567 (49%), Gaps = 82/567 (14%)
Query: 397 VIASLVGH--IFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 454
V A +VG +F A V+ + + + M E + AEAA+ AKS+FLA +SHEIRTP+NG
Sbjct: 353 VSAIVVGEKKMFAAFVHDVTQRKLAERSMEEARITAEAANRAKSEFLANMSHEIRTPLNG 412
Query: 455 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514
V+GM D+ ++TE+ Q++Y+ T + S +L+++IN++LD +K+E+GK++LE +SF++R
Sbjct: 413 VIGMTDLALETEMSREQREYMTTVKFSADSLLTVINDILDFSKIEAGKVDLETISFDIRE 472
Query: 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 574
++ L + ++ +KG+EL +S +PE ++GDPGR RQI+ NL+GN+IKFT G +
Sbjct: 473 CVETTLKTLALRADEKGLELLCDVSADLPEVVLGDPGRLRQIVVNLVGNAIKFTGSGEVS 532
Query: 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 634
+ V L D P +
Sbjct: 533 LRVGLA----------------------------------------DPGEGPDQ------ 546
Query: 635 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 694
+ +V DTG GI E +F F Q S +R +GGTG+GL+IS+ LV M G I
Sbjct: 547 --MYFNVSDTGIGISPEKLESVFASFSQADTSTTRQYGGTGLGLTISRRLVELMGGRIWC 604
Query: 695 VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 754
S P GS F FT + + + +P + G+K L+VD ++
Sbjct: 605 ESTPGKGSQFHFTVSL----PPVTDATAPVVVPKPLPL---LAGVKVLIVDDNKTNRRIL 657
Query: 755 RYHIQRLGIQVEVVSDQLQCLSQI-ASG--SKIINMILVEQEVWEKDTSVSTLFVNNLRK 811
++ G++V + L+ + A+G ++L + + + D + V +++
Sbjct: 658 EGLLRIWGMEVASAPEGDTALAMLHAAGLEGSPYRLLLTDMHMPKMD---GFMVVQQMKQ 714
Query: 812 LGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 871
+ +L++ AN + + I + ++KP+R L ++ RA+G G I+
Sbjct: 715 DTSLALPTVMMLSSGGHHGDAN-RCEQLGISAYLLKPVRRQELQDAIARALGSSMDG-IK 772
Query: 872 N----------WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK 921
+ +LP++ H IL+ +DN VN K+A L++ G +VV G++
Sbjct: 773 DKSLITQSTLVADLPAVRSLH------ILLAEDNEVNQKLAVRLLQKRGHSVVVANNGRE 826
Query: 922 ATELLMPPHQFDACFMDIQMPEMDGYE 948
A E ++D MD+QMPEMDG +
Sbjct: 827 AVE-ASESRKYDLVLMDVQMPEMDGIQ 852
>gi|196228263|ref|ZP_03127130.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
flavus Ellin428]
gi|196227666|gb|EDY22169.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
flavus Ellin428]
Length = 1079
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 166/536 (30%), Positives = 258/536 (48%), Gaps = 72/536 (13%)
Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
AK E H L +A AA+ AK FLA +SHEIRTPMNG++GM ++ +++ + QQ+
Sbjct: 388 AKTAEAEH----LAVEATAANRAKRDFLAVMSHEIRTPMNGIIGMTELALNSGVTPIQQE 443
Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
Y+ ++S + L+ L+N++LD +K+E+G+LELE + F+LR +L D + ++ G+E
Sbjct: 444 YLEMVRSSAETLLELLNDILDFSKIEAGRLELEHIDFDLRDLLGDTMQALGVRAHAHGLE 503
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
LA+ I VP+ L GDP R RQ++ NL+GN++KFTE+G + V V
Sbjct: 504 LALQIRPDVPDALTGDPHRLRQVVVNLVGNALKFTERGEVTVLV---------------- 547
Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
+N SG + + L V DTG GIP EAQ
Sbjct: 548 ---ENDPSGD-----------------------------EKVRLRFVVRDTGIGIPPEAQ 575
Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
+RIF F Q S +R GG+G+GL+I+ LVG M G+I S GSTFTFTA F
Sbjct: 576 ARIFNAFSQADSSTTRRFGGSGLGLAITSQLVGMMGGQINVESQVGQGSTFTFTAAF--- 632
Query: 714 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV-VSDQL 772
+ ++P E + ++ L VD + R ++V + S
Sbjct: 633 ---------DRQPDRPPITLPELEHLRVLAVDDNATNRLILRELFTSWRMEVVIADSAPA 683
Query: 773 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 832
+ +G + LV ++ D L V +R +++ +L +S +
Sbjct: 684 ALAALDRAGRDGQPIALVVTDMMMPDVDGFGL-VERMRASPLLRDTQVIMLTSS-NRPED 741
Query: 833 NTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIV 892
+ I + ++KP++ S L S+ MG ++ + E R L +IL+
Sbjct: 742 MARCQQMGIGAHLVKPIKQSRLMDSIVTVMGRSSRRREKPVETDVPRQRPL----RILLA 797
Query: 893 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+DN VN ++A L+ +G V G++A EL FD MD QMP M G+E
Sbjct: 798 EDNAVNQRLAVVNLESWGHTVTVAHNGREAVELFT-AQPFDLILMDSQMPRMGGFE 852
>gi|424613163|ref|ZP_18051966.1| sensory box protein [Vibrio cholerae HC-41A1]
gi|408014539|gb|EKG52173.1| sensory box protein [Vibrio cholerae HC-41A1]
Length = 1325
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 259/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 586 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 645
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 646 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 705
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 706 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 754
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 755 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 777
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 778 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 835
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 836 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 885
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
K +M+ V+ W + ++ LG K FL +++ + DG
Sbjct: 886 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFL----VTAYGREINLDG 936
Query: 839 VS---IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ + ++I+KP+ S L ++ + G+ + + N + R G+ +L+V+DN
Sbjct: 937 ENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 994
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 995 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 1044
>gi|117926671|ref|YP_867288.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117610427|gb|ABK45882.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 927
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 181/601 (30%), Positives = 282/601 (46%), Gaps = 86/601 (14%)
Query: 355 DGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHI--FQATVNR 412
D LW +++ G +R + R W + IS V++ G I F
Sbjct: 333 DALW--DSISRGHEWRGELINKRKDGSLYWEMAHISP-----VLSKTSGKITHFVGIKED 385
Query: 413 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 472
I ++E + +KKAEAA +AKS+FLAT+SHEIRTPMN +LGM ++L +T+L + Q+
Sbjct: 386 ITSLKETEAHLELTQKKAEAASLAKSEFLATMSHEIRTPMNAILGMTELLGETQLSIEQR 445
Query: 473 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 532
++ +++G+ L+ +IN++LD +KVESG LEL+ V FNLR I+ D + +S +KG+
Sbjct: 446 GFLSVCRSAGENLLQIINDILDISKVESGGLELQHVPFNLRRIVYDAGEVIRFRSHEKGL 505
Query: 533 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592
++I + VPE L+GDP R RQI+ N +GN+IKFTE G I V
Sbjct: 506 HQLIFIDESVPEWLLGDPARIRQILINFLGNAIKFTEAGTIATVV--------------- 550
Query: 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 652
ST+ K S +++ ++ DTG GIP
Sbjct: 551 ------------------------------STTAGKGSQVEIVFRVI---DTGIGIPESK 577
Query: 653 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712
QS +F F Q+ S R +GGTG+GL+ISK L M G++G S GSTFT +
Sbjct: 578 QSVVFDAFKQLDSSTQRRYGGTGLGLTISKKLADLMGGQLGLKSQEGHGSTFTLSLRLSR 637
Query: 713 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ- 771
+ S + QP + F GM L+ PI+ + R G + S+
Sbjct: 638 STGPSKS------SAQPAPI---FAGMHILIWHTHPIKRMNIEETLIRYGATLHHCSEVD 688
Query: 772 --LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 829
L+C +Q + I+++ + + + D + LR + + + +
Sbjct: 689 PFLRC-AQANHAATPIDLLFIHFDHADVDVLSE---IKRLRAVSPWEKIPVLIYGRCHDR 744
Query: 830 S-RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK 888
S A GV+ + +P+ +L L R + + P + + +
Sbjct: 745 SLPAKMLQQGVNF---LPEPVFPDVLLDELCRIT--------QKSQQPEVDSKPSRASLR 793
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATE-LLMPPHQFDACFMDIQMPEMDGY 947
+L+VDD+ NL +A+ LK V GK+A E +FD MDIQMPEMDG+
Sbjct: 794 VLLVDDSEDNLLLASTFLKSTPHIVQTATNGKQAVERFTQTSPRFDLILMDIQMPEMDGF 853
Query: 948 E 948
+
Sbjct: 854 Q 854
Score = 42.4 bits (98), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
L+ KILIVDD N L + ++ G A L++ H F +D+ MP
Sbjct: 3 LIEPKILIVDDRPANSMALRVSLSKLDVQIIEAPSGNDALGLMVE-HDFALMLLDVNMPG 61
Query: 944 MDGYEM 949
MDGYE+
Sbjct: 62 MDGYEV 67
>gi|417824412|ref|ZP_12471003.1| sensory box protein [Vibrio cholerae HE48]
gi|340048097|gb|EGR09020.1| sensory box protein [Vibrio cholerae HE48]
Length = 1331
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 260/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 761 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 842 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
K +M+ V+ W + ++ LG K FL +++ + DG
Sbjct: 892 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFL----VTAYGREINLDG 942
Query: 839 VS---IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ + ++I+KP+ S L ++ + G+ + + N + R +G+ +L+V+DN
Sbjct: 943 ENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFVGQSLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 1050
>gi|334119354|ref|ZP_08493440.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333458142|gb|EGK86761.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 2016
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 172/550 (31%), Positives = 261/550 (47%), Gaps = 77/550 (14%)
Query: 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
+ + +++AEAA AKS+FLA +SHEIRTPMN V+GM +L+DTEL Q+D++ T + S
Sbjct: 1316 ALEQTRREAEAASRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELKAQQRDFIETIRNS 1375
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
G L+S+IN++LD +K+ESGKLELE +LR +++ + + K+ KG++L I +
Sbjct: 1376 GDTLLSIINDILDFSKIESGKLELEMYPLSLRDCIENAIDQLAVKADQKGIDLGYLIYPQ 1435
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
P+ ++GD R RQI+ NL+ N IKFTE G VT+ + +VDS
Sbjct: 1436 TPKFILGDVTRLRQILVNLLNNGIKFTETGE--VTISVQASLVDSD-------------- 1479
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
KT ++ G+ S L + +++DTG GIP R+F F
Sbjct: 1480 --------------KTISEPGNLS------ESLYEIEFAIQDTGIGIPANRLDRLFKSFS 1519
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRM--------KGEIGFVSIP----------NIGST 703
QV S +R +GGTG+GL+ISK L M +G +G P +GST
Sbjct: 1520 QVDASTTRQYGGTGLGLAISKRLSETMNGMMWVESRGHVGGTPSPKWQAGQPHRITMGST 1579
Query: 704 FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 763
F FT V + E P + E G + L+VD +P ++ Q G+
Sbjct: 1580 FYFTIVAPAVAIELGE---------PIEMVPELSGKRLLIVDDQPTNRQILTLQAQSWGM 1630
Query: 764 QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 823
Q+ ++ L+ + SG IL Q ++++ + + C +L
Sbjct: 1631 QIRAAQSAVEALNWLESGETFDVAILDMQMPQMHGLTLASAIHQHPK---C--HRLPLVL 1685
Query: 824 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP-----SM 878
S+ A++S + + KP++ S L L + + LP M
Sbjct: 1686 LTSMGYPEASSSALSTHFAAFLSKPIKQSQLYQILIHVLQA--QPTKVQQHLPISVEDDM 1743
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938
L L R IL+ +D+ VN KVA L+R G G + E L +D MD
Sbjct: 1744 KLAQRLPLR-ILLAEDHLVNQKVALLLLERLGYRADIAANGLEVLEALH-RQPYDLVLMD 1801
Query: 939 IQMPEMDGYE 948
+QMPEMDG E
Sbjct: 1802 VQMPEMDGLE 1811
>gi|15641361|ref|NP_230993.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O1 biovar El Tor str. N16961]
gi|153822062|ref|ZP_01974729.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae B33]
gi|229511262|ref|ZP_04400741.1| hypothetical protein VCE_002669 [Vibrio cholerae B33]
gi|229518380|ref|ZP_04407824.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9]
gi|229608072|ref|YP_002878720.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236]
gi|254848471|ref|ZP_05237821.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MO10]
gi|255745740|ref|ZP_05419688.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101]
gi|262158982|ref|ZP_06030094.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1]
gi|360035246|ref|YP_004937009.1| hypothetical protein Vch1786_I0851 [Vibrio cholerae O1 str.
2010EL-1786]
gi|379741153|ref|YP_005333122.1| hypothetical protein O3Y_06280 [Vibrio cholerae IEC224]
gi|417813368|ref|ZP_12460025.1| sensory box protein [Vibrio cholerae HC-49A2]
gi|417816232|ref|ZP_12462864.1| sensory box protein [Vibrio cholerae HCUF01]
gi|418332380|ref|ZP_12943314.1| sensory box protein [Vibrio cholerae HC-06A1]
gi|418337124|ref|ZP_12946022.1| sensory box protein [Vibrio cholerae HC-23A1]
gi|418343639|ref|ZP_12950423.1| sensory box protein [Vibrio cholerae HC-28A1]
gi|418348791|ref|ZP_12953525.1| sensory box protein [Vibrio cholerae HC-43A1]
gi|418354901|ref|ZP_12957622.1| sensory box protein [Vibrio cholerae HC-61A1]
gi|419825836|ref|ZP_14349340.1| sensory box protein [Vibrio cholerae CP1033(6)]
gi|421316322|ref|ZP_15766893.1| sensory box protein [Vibrio cholerae CP1032(5)]
gi|421324953|ref|ZP_15775479.1| sensory box protein [Vibrio cholerae CP1041(14)]
gi|421328612|ref|ZP_15779126.1| sensory box protein [Vibrio cholerae CP1042(15)]
gi|421331637|ref|ZP_15782117.1| sensory box protein [Vibrio cholerae CP1046(19)]
gi|421339102|ref|ZP_15789537.1| sensory box protein [Vibrio cholerae HC-20A2]
gi|421347236|ref|ZP_15797618.1| sensory box protein [Vibrio cholerae HC-46A1]
gi|422891457|ref|ZP_16933835.1| sensory box protein [Vibrio cholerae HC-40A1]
gi|422902668|ref|ZP_16937665.1| sensory box protein [Vibrio cholerae HC-48A1]
gi|422906547|ref|ZP_16941377.1| sensory box protein [Vibrio cholerae HC-70A1]
gi|422913130|ref|ZP_16947649.1| sensory box protein [Vibrio cholerae HFU-02]
gi|422925611|ref|ZP_16958636.1| sensory box protein [Vibrio cholerae HC-38A1]
gi|423144933|ref|ZP_17132542.1| sensory box protein [Vibrio cholerae HC-19A1]
gi|423149612|ref|ZP_17136940.1| sensory box protein [Vibrio cholerae HC-21A1]
gi|423153426|ref|ZP_17140620.1| sensory box protein [Vibrio cholerae HC-22A1]
gi|423156239|ref|ZP_17143343.1| sensory box protein [Vibrio cholerae HC-32A1]
gi|423160064|ref|ZP_17147032.1| sensory box protein [Vibrio cholerae HC-33A2]
gi|423164787|ref|ZP_17151542.1| sensory box protein [Vibrio cholerae HC-48B2]
gi|423730917|ref|ZP_17704231.1| sensory box protein [Vibrio cholerae HC-17A1]
gi|423754962|ref|ZP_17712238.1| sensory box protein [Vibrio cholerae HC-50A2]
gi|423892605|ref|ZP_17726288.1| sensory box protein [Vibrio cholerae HC-62A1]
gi|423927383|ref|ZP_17730905.1| sensory box protein [Vibrio cholerae HC-77A1]
gi|424001928|ref|ZP_17745014.1| sensory box protein [Vibrio cholerae HC-17A2]
gi|424006089|ref|ZP_17749069.1| sensory box protein [Vibrio cholerae HC-37A1]
gi|424024107|ref|ZP_17763767.1| sensory box protein [Vibrio cholerae HC-62B1]
gi|424026957|ref|ZP_17766570.1| sensory box protein [Vibrio cholerae HC-69A1]
gi|424586230|ref|ZP_18025819.1| sensory box protein [Vibrio cholerae CP1030(3)]
gi|424594931|ref|ZP_18034264.1| sensory box protein [Vibrio cholerae CP1040(13)]
gi|424598796|ref|ZP_18037989.1| sensory box protein [Vibrio Cholerae CP1044(17)]
gi|424601535|ref|ZP_18040687.1| sensory box protein [Vibrio cholerae CP1047(20)]
gi|424606527|ref|ZP_18045487.1| sensory box protein [Vibrio cholerae CP1050(23)]
gi|424610357|ref|ZP_18049211.1| sensory box protein [Vibrio cholerae HC-39A1]
gi|424616978|ref|ZP_18055665.1| sensory box protein [Vibrio cholerae HC-42A1]
gi|424621929|ref|ZP_18060452.1| sensory box protein [Vibrio cholerae HC-47A1]
gi|424644902|ref|ZP_18082650.1| sensory box protein [Vibrio cholerae HC-56A2]
gi|424652582|ref|ZP_18090058.1| sensory box protein [Vibrio cholerae HC-57A2]
gi|424656486|ref|ZP_18093784.1| sensory box protein [Vibrio cholerae HC-81A2]
gi|440709608|ref|ZP_20890265.1| hypothetical protein VC4260B_10100 [Vibrio cholerae 4260B]
gi|443503439|ref|ZP_21070418.1| sensory box protein [Vibrio cholerae HC-64A1]
gi|443507340|ref|ZP_21074124.1| sensory box protein [Vibrio cholerae HC-65A1]
gi|443511467|ref|ZP_21078122.1| sensory box protein [Vibrio cholerae HC-67A1]
gi|443515022|ref|ZP_21081549.1| sensory box protein [Vibrio cholerae HC-68A1]
gi|443518820|ref|ZP_21085230.1| sensory box protein [Vibrio cholerae HC-71A1]
gi|443523710|ref|ZP_21089937.1| sensory box protein [Vibrio cholerae HC-72A2]
gi|443531320|ref|ZP_21097335.1| sensory box protein [Vibrio cholerae HC-7A1]
gi|443538664|ref|ZP_21104519.1| sensory box protein [Vibrio cholerae HC-81A1]
gi|449056162|ref|ZP_21734830.1| Sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O1 str. Inaba G4222]
gi|9655841|gb|AAF94507.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O1 biovar El Tor str. N16961]
gi|126520395|gb|EAZ77618.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae B33]
gi|229345095|gb|EEO10069.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9]
gi|229351227|gb|EEO16168.1| hypothetical protein VCE_002669 [Vibrio cholerae B33]
gi|229370727|gb|ACQ61150.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236]
gi|254844176|gb|EET22590.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MO10]
gi|255736815|gb|EET92212.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101]
gi|262029167|gb|EEY47819.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1]
gi|340041958|gb|EGR02924.1| sensory box protein [Vibrio cholerae HCUF01]
gi|340042672|gb|EGR03637.1| sensory box protein [Vibrio cholerae HC-49A2]
gi|341623382|gb|EGS48917.1| sensory box protein [Vibrio cholerae HC-48A1]
gi|341623445|gb|EGS48978.1| sensory box protein [Vibrio cholerae HC-70A1]
gi|341624505|gb|EGS49997.1| sensory box protein [Vibrio cholerae HC-40A1]
gi|341639567|gb|EGS64184.1| sensory box protein [Vibrio cholerae HFU-02]
gi|341647193|gb|EGS71279.1| sensory box protein [Vibrio cholerae HC-38A1]
gi|356419191|gb|EHH72749.1| sensory box protein [Vibrio cholerae HC-06A1]
gi|356419628|gb|EHH73173.1| sensory box protein [Vibrio cholerae HC-21A1]
gi|356424676|gb|EHH78075.1| sensory box protein [Vibrio cholerae HC-19A1]
gi|356431642|gb|EHH84846.1| sensory box protein [Vibrio cholerae HC-22A1]
gi|356432702|gb|EHH85899.1| sensory box protein [Vibrio cholerae HC-23A1]
gi|356436053|gb|EHH89180.1| sensory box protein [Vibrio cholerae HC-28A1]
gi|356441913|gb|EHH94789.1| sensory box protein [Vibrio cholerae HC-32A1]
gi|356447530|gb|EHI00321.1| sensory box protein [Vibrio cholerae HC-43A1]
gi|356448520|gb|EHI01284.1| sensory box protein [Vibrio cholerae HC-33A2]
gi|356453303|gb|EHI05966.1| sensory box protein [Vibrio cholerae HC-61A1]
gi|356454312|gb|EHI06960.1| sensory box protein [Vibrio cholerae HC-48B2]
gi|356646400|gb|AET26455.1| conserved hypothetical protein [Vibrio cholerae O1 str. 2010EL-1786]
gi|378794663|gb|AFC58134.1| hypothetical protein O3Y_06280 [Vibrio cholerae IEC224]
gi|395920623|gb|EJH31445.1| sensory box protein [Vibrio cholerae CP1041(14)]
gi|395921279|gb|EJH32099.1| sensory box protein [Vibrio cholerae CP1032(5)]
gi|395930118|gb|EJH40867.1| sensory box protein [Vibrio cholerae CP1042(15)]
gi|395932901|gb|EJH43644.1| sensory box protein [Vibrio cholerae CP1046(19)]
gi|395944050|gb|EJH54724.1| sensory box protein [Vibrio cholerae HC-20A2]
gi|395946296|gb|EJH56960.1| sensory box protein [Vibrio cholerae HC-46A1]
gi|395960274|gb|EJH70649.1| sensory box protein [Vibrio cholerae HC-56A2]
gi|395961513|gb|EJH71836.1| sensory box protein [Vibrio cholerae HC-57A2]
gi|395964689|gb|EJH74888.1| sensory box protein [Vibrio cholerae HC-42A1]
gi|395972195|gb|EJH81802.1| sensory box protein [Vibrio cholerae HC-47A1]
gi|395975624|gb|EJH85108.1| sensory box protein [Vibrio cholerae CP1030(3)]
gi|395977311|gb|EJH86722.1| sensory box protein [Vibrio cholerae CP1047(20)]
gi|408008224|gb|EKG46228.1| sensory box protein [Vibrio cholerae HC-39A1]
gi|408034321|gb|EKG70825.1| sensory box protein [Vibrio cholerae CP1040(13)]
gi|408043399|gb|EKG79395.1| sensory box protein [Vibrio Cholerae CP1044(17)]
gi|408044730|gb|EKG80622.1| sensory box protein [Vibrio cholerae CP1050(23)]
gi|408055467|gb|EKG90395.1| sensory box protein [Vibrio cholerae HC-81A2]
gi|408609917|gb|EKK83293.1| sensory box protein [Vibrio cholerae CP1033(6)]
gi|408625305|gb|EKK98218.1| sensory box protein [Vibrio cholerae HC-17A1]
gi|408638279|gb|EKL10200.1| sensory box protein [Vibrio cholerae HC-50A2]
gi|408656242|gb|EKL27339.1| sensory box protein [Vibrio cholerae HC-77A1]
gi|408657517|gb|EKL28596.1| sensory box protein [Vibrio cholerae HC-62A1]
gi|408846838|gb|EKL86917.1| sensory box protein [Vibrio cholerae HC-37A1]
gi|408848255|gb|EKL88306.1| sensory box protein [Vibrio cholerae HC-17A2]
gi|408871573|gb|EKM10810.1| sensory box protein [Vibrio cholerae HC-62B1]
gi|408879848|gb|EKM18791.1| sensory box protein [Vibrio cholerae HC-69A1]
gi|439975197|gb|ELP51333.1| hypothetical protein VC4260B_10100 [Vibrio cholerae 4260B]
gi|443432171|gb|ELS74702.1| sensory box protein [Vibrio cholerae HC-64A1]
gi|443436373|gb|ELS82496.1| sensory box protein [Vibrio cholerae HC-65A1]
gi|443439642|gb|ELS89340.1| sensory box protein [Vibrio cholerae HC-67A1]
gi|443443664|gb|ELS96950.1| sensory box protein [Vibrio cholerae HC-68A1]
gi|443447869|gb|ELT04511.1| sensory box protein [Vibrio cholerae HC-71A1]
gi|443450261|gb|ELT10538.1| sensory box protein [Vibrio cholerae HC-72A2]
gi|443458403|gb|ELT25799.1| sensory box protein [Vibrio cholerae HC-7A1]
gi|443466253|gb|ELT40912.1| sensory box protein [Vibrio cholerae HC-81A1]
gi|448263985|gb|EMB01224.1| Sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O1 str. Inaba G4222]
Length = 1331
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 259/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 761 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 842 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
K +M+ V+ W + ++ LG K FL +++ + DG
Sbjct: 892 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFL----VTAYGREINLDG 942
Query: 839 VS---IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ + ++I+KP+ S L ++ + G+ + + N + R G+ +L+V+DN
Sbjct: 943 ENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 1050
>gi|16761737|ref|NP_457354.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29143221|ref|NP_806563.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213163046|ref|ZP_03348756.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|378961034|ref|YP_005218520.1| Signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
gi|25308233|pir||AI0860 sensor protein [imported] - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16504038|emb|CAD06072.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi]
gi|29138854|gb|AAO70423.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|374354906|gb|AEZ46667.1| Signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Typhi str. P-stx-12]
Length = 918
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 168/525 (32%), Positives = 258/525 (49%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VPE +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + LVE+ LS++K
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDI---LVEK--------RALSNTK--------- 442
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ + V + DTG GIP QSR+F F Q S
Sbjct: 443 ----------------------------VQIEVQIRDTGIGIPERDQSRLFQAFRQADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN + ++ G + ++P A+ + + ++V + S L
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYIEPNATAAQCTLDLLSDTPVEV-IYSPTFSALPLAHYD 578
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
I+++ + +E L + + R + LLA +
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + + + +++ ++ VDDN NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMDIQMPDMDG 726
>gi|428305786|ref|YP_007142611.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
gi|428247321|gb|AFZ13101.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
9333]
Length = 1034
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 166/559 (29%), Positives = 273/559 (48%), Gaps = 74/559 (13%)
Query: 403 GHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 462
+ Q + R ++ E + E ++ AE+A KS FLA +SHEIRTPMN V+GM +L
Sbjct: 342 AQLLQVEIRRAEELAERNLVLEEARQAAESAVKMKSAFLANMSHEIRTPMNAVIGMTGLL 401
Query: 463 MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 522
++TE+ Q+D++ T + S L+++INE+LD +K+E+G++ LE ++F L +++V L
Sbjct: 402 LETEVTSEQKDFLETIRISADNLLTIINEILDFSKIEAGEMHLETINFGLHQCVEEVAEL 461
Query: 523 FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 582
+ +Q+KG+E+ ++ +P T GDP R RQI+TNL+ N+IKFTE G VT+Y+
Sbjct: 462 LATSAQEKGIEITTFVPANIPVTFKGDPTRLRQILTNLVSNAIKFTEVGG--VTIYV--- 516
Query: 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 642
+++ ET + ++ + + V D
Sbjct: 517 ---NLQSETSVDATMH----FGVKD----------------------------------- 534
Query: 643 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 702
TG G+ Q ++F F Q S +R +GGTG+GL+I K LV M GEIG S G+
Sbjct: 535 -TGIGLSPAQQKKLFQSFSQADASTTRKYGGTGLGLAICKALVELMGGEIGITSAQGEGA 593
Query: 703 TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVV-DPRPIRAKVSRYHIQRL 761
TF FT T N+ + Q N N + ++ LVV D R+ ++ +H
Sbjct: 594 TFWFTI-------TLNKQPTTQPQNLENPALDRLKKVRLLVVEDFLDTRSAIA-HHTTAW 645
Query: 762 GIQVEVVSD---QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818
G+QV++ + +Q L Q + L++ + + D + + KL Q
Sbjct: 646 GMQVDLAENGATAIQDLQQAVDSNNPYQFALIDLNLPDMDGETLSKTIKADPKL-AKTQL 704
Query: 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L + N + ++ + V+I ++KP+++S + SL A + N+ + +
Sbjct: 705 ILMIPVNQLEQAKKLLN---VTIVDYLIKPVKTSKMLNSLVAATTISNQAEQSVNQHITT 761
Query: 879 SLRHLLLGR---------KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 929
S + + KI++ +DN VN KVA LK G A G++ E L
Sbjct: 762 SKSFTTIDKKTQNRRSQVKIILAEDNKVNQKVALNQLKNLGYAADVANNGQEVLEQL-DK 820
Query: 930 HQFDACFMDIQMPEMDGYE 948
+D MD QMP +DGYE
Sbjct: 821 QNYDLVLMDCQMPILDGYE 839
>gi|213648276|ref|ZP_03378329.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length = 855
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 168/525 (32%), Positives = 258/525 (49%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VPE +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + LVE+ LS++K
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDI---LVEK--------RALSNTK--------- 442
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ + V + DTG GIP QSR+F F Q S
Sbjct: 443 ----------------------------VQIEVQIRDTGIGIPERDQSRLFQAFRQADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN + ++ G + ++P A+ + + ++V + S L
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYIEPNATAAQCTLDLLSDTPVEV-IYSPTFSALPLAHYD 578
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
I+++ + +E L + + R + LLA +
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + + + +++ ++ VDDN NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMDIQMPDMDG 726
>gi|403059834|ref|YP_006648051.1| sensor histidine kinase/response regulator [Pectobacterium
carotovorum subsp. carotovorum PCC21]
gi|402807160|gb|AFR04798.1| sensor histidine kinase/response regulator [Pectobacterium
carotovorum subsp. carotovorum PCC21]
Length = 931
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 178/536 (33%), Positives = 256/536 (47%), Gaps = 100/536 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T L+ TQ DY+ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLNTTQTDYLLTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE + F+L + LDDV+ L + + +KG+EL + I + VPE
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R +QIITNL+GN+IKFTE+G+I I VE S
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNI------------DIRVEKRRQESHQ-------- 442
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ L V + DTG GI QS++F F Q S
Sbjct: 443 ----------------------------VQLEVQIRDTGIGIAELQQSQLFQAFRQADTS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S N GSTF F N M
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITL--------PLNPHAMP 526
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASGSKI 784
+P + QG V+ PI A+ + L I Q ++ Q+ G
Sbjct: 527 TEP--AYTMLQGKHLAYVEYHPIAAQAT------LDILSQTPLIVSYSPTFEQLPEGD-- 576
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT-STDGVSIPS 843
+++L+ V ++T + + LR + C + L S++ A T GV +
Sbjct: 577 FDILLLGIPVQYRNTLLD--YTPRLRDI-CRRSPCVILALPSLAQMDAEQLKTFGVH--A 631
Query: 844 VIMKPLRSSMLAASLQRAM----------GVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
+ KPL +S L LQ + ++G +R+ P+ L ++ VD
Sbjct: 632 CLSKPLAASRLLPLLQDSTLFQLSFLPDDAASHQGVVRH---PAR------LPLSVMAVD 682
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKA---TELLMPPHQFDACFMDIQMPEMDG 946
DN NLK+ L+ ++ E G+ A EL HQFD MDIQMP MDG
Sbjct: 683 DNPANLKLIGTLLEEQVETIILCESGQDAIAQAEL----HQFDVILMDIQMPGMDG 734
>gi|209522722|ref|ZP_03271280.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
gi|209496771|gb|EDZ97068.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
Length = 1493
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 183/614 (29%), Positives = 286/614 (46%), Gaps = 115/614 (18%)
Query: 389 ISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEI 448
+++ +GI + + + + V +E + E K AE A AKS+FLAT+SHEI
Sbjct: 687 VASQVGITIAQA---KLLEVEVKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEI 743
Query: 449 RTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 508
RTPMN V+GM +L+D EL Q+D+V T + SG AL+++IN++LD +K+ESGKLELE
Sbjct: 744 RTPMNAVIGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQ 803
Query: 509 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT 568
F LR L++ L L SG++ +KG+ELA I P+T++GD R RQ++ NL+ N+IKFT
Sbjct: 804 PFKLRNCLEECLELLSGRADEKGLELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFT 863
Query: 569 EKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFK 628
+G + + V K + D K
Sbjct: 864 SEGEVILAV--------------------------------------KATHPDAKKDVKK 885
Query: 629 SSSADLIN----LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 684
S +D L V DTG GIP + R+F F QV S +R +GGTG+GL+IS+ L
Sbjct: 886 SDDSDFTESHYVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRL 945
Query: 685 VGRMKGEIGFVSIPNI-------------------------------GSTFTFTAVFGNG 713
M G++ S N+ GS F FT V
Sbjct: 946 SQLMNGKMWVASWVNLLDEYHDETSSLISSVAGNPPPDFVRPQVFRPGSIFYFTIVCSGF 1005
Query: 714 SSTSNEHNSQQMNNQPN--SVSSEF-QGMKALVVDPRPIRAKVSRYHIQRLG---IQVEV 767
N P+ S +F G K L+V+ I K+ ++ G ++V+
Sbjct: 1006 -------------NTPDLGEFSDDFLHGKKVLIVEHHDINQKLLIRQVKSWGMVPVRVKT 1052
Query: 768 VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK--LGCGFQSKLF--LL 823
+D L+ L + +++I++ + + D + + L K + ++ K F ++
Sbjct: 1053 GADALKVLHD----NPGLDLIILGINLPDMDEATLASRIRQLEKQMIAGKYRQKPFNLVM 1108
Query: 824 ANSISSSRA--NTSTDGVSIPSVIMKPLRSSMLAASLQR----AMGVGNKGNIRNWEL-- 875
N S++ GV++ ++ KPL+ S +L + + + +I+N E
Sbjct: 1109 FNYASNTEVLRRLEAQGVNVAGLVNKPLKQSQFYNTLMQIFADSQTIEKHYHIKNAESGY 1168
Query: 876 -PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 934
P++ H L +IL+ +DN N KVA L+R G G + + L Q+D
Sbjct: 1169 DPAIPQPHANL--RILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLEVLDALN-RQQYDV 1225
Query: 935 CFMDIQMPEMDGYE 948
MD+QMPEMDG E
Sbjct: 1226 ILMDVQMPEMDGLE 1239
>gi|154252300|ref|YP_001413124.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
DS-1]
gi|154156250|gb|ABS63467.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
DS-1]
Length = 946
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 168/555 (30%), Positives = 264/555 (47%), Gaps = 95/555 (17%)
Query: 413 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 472
IA++E ++ K +AEA + AKS FLA +SHEIRTPMNGVLGM ++L+ T L+ Q+
Sbjct: 253 IAELEATKQELIAAKDQAEAGNRAKSDFLANMSHEIRTPMNGVLGMTELLLTTALNAEQR 312
Query: 473 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 532
+ T + SG+AL++++N++LD +K+E+G+LEL+ + F+L ++ +SL + ++ +K +
Sbjct: 313 KFAETVRESGEALLTIVNDILDVSKLEAGRLELDHIDFDLVNTVESAISLMAARAAEKQI 372
Query: 533 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF--VTVYLVEEVVDSIEVE 590
+L YI GDP R RQ++ NL+GN+IKFTEKG + V+VY VE+
Sbjct: 373 DLGAYIEPAARGIYRGDPARLRQVLLNLIGNAIKFTEKGGVAVRVSVYRVED-------- 424
Query: 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 650
P +S +L V DTG GIP
Sbjct: 425 -----------------------------------PQTKAS----HLRFEVHDTGIGIPE 445
Query: 651 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710
+ R+F F Q S++R +GGTG+GL+I K +V M G IG S GSTF F
Sbjct: 446 DVCGRLFQKFSQADSSVTRRYGGTGLGLAICKQIVELMDGNIGVNSRVGAGSTFWFQL-- 503
Query: 711 GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 770
S + + ++ P + +K LVVD P+ V + GI V D
Sbjct: 504 ---SLVRSAAHLPDLSRLP----VYLEKLKVLVVDDVPVNLDVLTSQLGTYGITVTRAED 556
Query: 771 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK--LGCGFQSKL-------- 820
+++ + W F++ + G S++
Sbjct: 557 GFAAQAEL-------------ERAWHAGHPYDIAFLDQMMPGISGEDLASRIRNNPDLAD 603
Query: 821 --FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG---VGNKGNIRNWEL 875
+L +S S + + ++ + + KPLR L L R + + + N ++
Sbjct: 604 MKLVLVSSAGSHASKLHEENDTLDARVEKPLRQHELLDCLMRVYSGAPLVDSSSAHNRDV 663
Query: 876 ----PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 931
+ S R L +IL+ +DN +N KVA A L++ G +V E G +A + + H
Sbjct: 664 LEDGAATSARTL----RILLAEDNKINQKVALAMLEQLGHSVTIAENGLQAVDAVRRGH- 718
Query: 932 FDACFMDIQMPEMDG 946
FD MDIQMPE+DG
Sbjct: 719 FDVVLMDIQMPELDG 733
>gi|261251052|ref|ZP_05943626.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417955337|ref|ZP_12598357.1| CheY-like receiver [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260937925|gb|EEX93913.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342813393|gb|EGU48364.1| CheY-like receiver [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 1319
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 173/555 (31%), Positives = 270/555 (48%), Gaps = 84/555 (15%)
Query: 398 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
++ +VG + T ++ + E + + K+ A+A AK +FLA +SHEIRTPMNG+LG
Sbjct: 573 VSGIVGILLDLTERKLMETE-----LRDAKETADAMSRAKGEFLANMSHEIRTPMNGILG 627
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
M+ + ++TELD Q Y+ S K L+ +IN++LD +K+E GKL +E + F+L + D
Sbjct: 628 MVHLALNTELDPAQHKYLTRINESAKNLLGIINDILDFSKIEVGKLNIETIDFSLDEVFD 687
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
++ ++ S K+Q+K +E + I +VP LIGDP R Q++ NL GN++KFTE+G + V V
Sbjct: 688 NLTNVISLKAQEKKIEFLLDIEPQVPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVVAV 747
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 637
IE+ TE D++ L
Sbjct: 748 --------RIEMLTE---------------------------------------RDVV-L 759
Query: 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697
SV+DTG GI E + +F F Q SI+R GGTG+GLSISK LV M G++ S
Sbjct: 760 HFSVKDTGIGIDKEKIAHLFDAFSQADSSITREFGGTGLGLSISKQLVELMGGQLSVSST 819
Query: 698 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 757
GSTF FT G + +M + ++ G +ALVVD +
Sbjct: 820 LGAGSTFAFTITCGLQEA--------KMRDISKPIAG-LAGKRALVVDDNDSARNILVTL 870
Query: 758 IQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817
+ + + VS+ + L +I ++ V+ W + +
Sbjct: 871 LNAMHFDAKAVSNGFEALDEIRRDQ--FDLFFVD---WNMPGLNGIELLQTAQSERLLQH 925
Query: 818 SKLFLL---ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGN--KGNIRN 872
SK FL+ IS +AN+ + S+I+KP+ S L ++ + G+ + + N N
Sbjct: 926 SKNFLVTAYGREISLDQANSKL----VDSLIVKPVNPSNLLDAIMDSFGIEHVTRDNPTN 981
Query: 873 -WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 931
+E P G+ IL+V+DN VN +VA LK V+ E G++A ++L H
Sbjct: 982 QFEKPVFD------GQTILLVEDNEVNQEVAIGLLKGTNVNVLTAENGQQAMDML-EQHP 1034
Query: 932 FDACFMDIQMPEMDG 946
D MD+QMP +DG
Sbjct: 1035 VDLVLMDMQMPVLDG 1049
>gi|428308622|ref|YP_007119599.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428250234|gb|AFZ16193.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 1157
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 179/566 (31%), Positives = 290/566 (51%), Gaps = 37/566 (6%)
Query: 394 GILVIASLVGHIFQATVNRIAKVEEDYHGMMELKK-KAEAADVA--KSQFLATVSHEIRT 450
G L I + + A + +A +E +L+K KAE+ + KSQFLA +SHEIRT
Sbjct: 375 GRLWILDDITEPYLAQLELVASSQELSQTNQQLEKAKAESEEATRIKSQFLANMSHEIRT 434
Query: 451 PMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 510
PMN ++GM +L+ TEL Q+D+V TAQ+S +AL++LIN++LD +K+ESG +ELE +F
Sbjct: 435 PMNAIIGMTGLLLTTELTPQQRDFVTTAQSSSEALLALINDILDLSKIESGSVELEKQAF 494
Query: 511 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK 570
NL++ +++ L + + K+ +KG+ELA + + P ++GD R RQI+ NL+ N++KFT+
Sbjct: 495 NLQSCIEESLDILALKAAEKGIELAYGMHPQTPSIIVGDVTRLRQILVNLVSNAVKFTQT 554
Query: 571 GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSS 630
G + V+V E D + + + C++ + F F+
Sbjct: 555 GEVVVSVTAKELEGDKGDKGDKGDKGDKGEKILYTNETCYNLQPATKFE-------FQ-- 605
Query: 631 SADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKG 690
+V+DTG GIP + R+F F QV S +R +GGTG+GL+I K L M G
Sbjct: 606 --------FAVKDTGIGIPPDRIDRLFKSFSQVDASTTRKYGGTGLGLAIGKQLSEMMGG 657
Query: 691 EIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIR 750
+ S N GSTF FT V ++T+ +S MN+ ++ +FQG + L+VD
Sbjct: 658 RMWVESQVNRGSTFYFTLV---AAATA---DSSPMNS--DNFPPQFQGKRLLIVDDNDTY 709
Query: 751 AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLR 810
++ +Q G+ + + + + G + ++M L++ ++ D +R
Sbjct: 710 RQILTQQLQSWGMLIYGAASAAEAFDWLNQG-QPLDMALLDMQMPGMD---GLTLATKIR 765
Query: 811 KLGCGFQSKLFLLANSISS-SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM-GVGNKG 868
+Q+ +L SI+ RAN + V + + + KP++ S L + L + + G
Sbjct: 766 SYS-NYQTLPLVLLTSINGLERANQTHVPVDLAAFLTKPIKQSQLDSVLNQILAGSSISV 824
Query: 869 NIRNWELPSMSLR-HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 927
N LP L+ L +IL+ +DN VN KVA LKR G V G + + +
Sbjct: 825 NPLPVTLPENPLQLATQLPLRILLAEDNGVNQKVALHLLKRIGYQADVVSNGLEVLDAVK 884
Query: 928 PPHQFDACFMDIQMPEMDGYEMLPCF 953
+D MD+QMP MDG C
Sbjct: 885 -RKSYDVVLMDVQMPLMDGLTATRCI 909
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
G+++LIVDDN+ ++ L+ +G + +A + L D +D+QMP MD
Sbjct: 697 GKRLLIVDDNDTYRQILTQQLQSWGMLIYGAASAAEAFDWLNQGQPLDMALLDMQMPGMD 756
Query: 946 GYEMLPCFESF 956
G + S+
Sbjct: 757 GLTLATKIRSY 767
>gi|428213913|ref|YP_007087057.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428002294|gb|AFY83137.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1680
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 182/583 (31%), Positives = 277/583 (47%), Gaps = 100/583 (17%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
V IA V ++ + ++E ++ A A KSQFLA +SHEIRTPMNGVLGM +L+ T L
Sbjct: 931 VGGIAIVTDNINELVEARETALEAARIKSQFLANMSHEIRTPMNGVLGMTGLLLQTSLSN 990
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q+D T + SG+ L+ +IN++LD +K+E+G++ LE++ F L +++V+ L + +
Sbjct: 991 QQRDCAETIRISGEHLLRVINDILDFSKLEAGEMNLESLDFQLSTCIEEVVDLLAAPAHQ 1050
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV--YLVEEVVDSI 587
KG+ELAV+I +VP+ LIGDP R RQI+ NL+ N IKFT +G + V V + E +D+
Sbjct: 1051 KGLELAVWIDPKVPQHLIGDPARLRQILLNLINNGIKFTHRGEVVVQVNQSMKPESLDA- 1109
Query: 588 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 647
KG + + L +V+DTG G
Sbjct: 1110 -------------------------KGQEVW------------------LRFTVQDTGIG 1126
Query: 648 IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 707
IP E Q+++F F QV S +R +GGTG+GL+I K LV M GEIG S P+ GS F F
Sbjct: 1127 IPKERQNKLFQSFSQVDTSTTRRYGGTGLGLAICKQLVELMGGEIGVESYPDRGSNFWFE 1186
Query: 708 AVFGNGSSTSNEHNSQQMNNQPN-SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI--- 763
F + ++ + P ++ +K LV P + RY GI
Sbjct: 1187 LKF-------RKQGTRVSGSIPRCALPIALTEVKVLVAHPSAATRQSLRYLAADWGIGLD 1239
Query: 764 QVEVVSDQLQCLSQIASGSKIINMILVEQEVW---------------------------E 796
+VE S Q L A+ + + +V+ + E
Sbjct: 1240 EVENYSSLCQTLQAAATAGQPYQVAIVDLHLLLGLEDDRQEHGDCQEDCKNCTDCTLSDE 1299
Query: 797 KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA-----NTSTDGVS-IPSVIMKPLR 850
D S+ F+ L ++ LFL+ RA + G+S + ++KP+R
Sbjct: 1300 PDPSMVEEFIQKLSPFTP--ETSLFLMTTLQYRDRALALVQCSQQRGLSFVEGHLVKPVR 1357
Query: 851 SSMLAAS-----LQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905
SS L S L+ G++ + + P S H + KIL+ +D+ +N +V
Sbjct: 1358 SSQLLNSLMTVVLRPQTRSGDRTVSDSPQNPVPSPIHSPV--KILVAEDHPINQQVILQQ 1415
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L+ G CV G +A L H +D MD QMP +DGY+
Sbjct: 1416 LEALGYQGECVGNGVEAIARLGQKH-YDIVLMDCQMPGLDGYQ 1457
>gi|254409964|ref|ZP_05023744.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196183000|gb|EDX77984.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1946
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 175/565 (30%), Positives = 271/565 (47%), Gaps = 58/565 (10%)
Query: 386 LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 445
L A++ +GI A + + ++ ++ E M + K+ AEAA+ AKS FLAT+S
Sbjct: 1208 LEAVADQVGI---ALAQAQLLEQEKHQRQQLAEQNVAMEKAKQIAEAANRAKSDFLATMS 1264
Query: 446 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505
HEIRTPMN V+GM +L+DT+L Q ++ T + SG+AL+++IN++LD +K+ESGKLEL
Sbjct: 1265 HEIRTPMNAVIGMTGLLLDTQLSHEQAEFAETIRNSGEALLTIINDILDFSKIESGKLEL 1324
Query: 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 565
E FNLR +++ L L + K+ +K +ELA P T+ GD R RQI+ NL+ N++
Sbjct: 1325 EEQPFNLRTCIEESLDLLTPKAAEKAIELAYLFDPHTPNTIRGDITRLRQILVNLLSNAL 1384
Query: 566 KFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 625
KFT +G + V+V S+E +LS N Y +
Sbjct: 1385 KFTHQGEVTVSVSSKRVSPQSLE---QLSHRTNKEQQYEI-------------------- 1421
Query: 626 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 685
+ +V+DTG GIP + R+F F QV S SR +GGTG+GL ISK L
Sbjct: 1422 ------------LFAVKDTGIGIPPDRLDRLFKAFSQVDSSTSRHYGGTGLGLVISKRLS 1469
Query: 686 GRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN-NQPNSVSSEFQGMKALVV 744
M G I S GS F FT V + + N ++ QP + +G + L+V
Sbjct: 1470 EMMGGRIWVESEVGKGSIFYFTIV----APVCHIDNLSNLDLRQP-----QLEGKRMLIV 1520
Query: 745 DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL 804
D ++ Q G+ Q L + G + ++ +++ + D
Sbjct: 1521 DDNATNRRILTLQGQSWGVLTRAAESGEQALDWLQQG-ETFDLAILDMHMPGMD---GVN 1576
Query: 805 FVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864
+ +R+ G + L +L SI + D + + KP++ S L L + V
Sbjct: 1577 LASQIRRQPDGQEIPLVML-TSIGKPENSGQLDEAKFAAFLTKPIKQSQLYNVLMDVL-V 1634
Query: 865 GNKGNIRNWELPSMSLRHLL---LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK 921
G +R+ S ++ + + +IL+ +DN VN +V L R G G +
Sbjct: 1635 GQPVKVRSTCEISPTIDPYMGANIPLRILLAEDNVVNQQVGLHILGRMGYRADVAANGLE 1694
Query: 922 ATELLMPPHQFDACFMDIQMPEMDG 946
E L +D MD+QMPEMDG
Sbjct: 1695 VLEALH-RQSYDVVLMDVQMPEMDG 1718
Score = 47.8 bits (112), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 875 LPSMSLRHLLL-GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 933
L ++ LR L G+++LIVDDN N ++ + +G E G++A + L FD
Sbjct: 1502 LSNLDLRQPQLEGKRMLIVDDNATNRRILTLQGQSWGVLTRAAESGEQALDWLQQGETFD 1561
Query: 934 ACFMDIQMPEMDGYEM 949
+D+ MP MDG +
Sbjct: 1562 LAILDMHMPGMDGVNL 1577
>gi|359688370|ref|ZP_09258371.1| multi-sensor hybrid histidine kinase [Leptospira licerasiae serovar
Varillal str. MMD0835]
gi|418748435|ref|ZP_13304727.1| PAS domain S-box protein [Leptospira licerasiae str. MMD4847]
gi|418756108|ref|ZP_13312296.1| PAS domain S-box protein [Leptospira licerasiae serovar Varillal
str. VAR 010]
gi|384115779|gb|EIE02036.1| PAS domain S-box protein [Leptospira licerasiae serovar Varillal
str. VAR 010]
gi|404275504|gb|EJZ42818.1| PAS domain S-box protein [Leptospira licerasiae str. MMD4847]
Length = 864
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 161/528 (30%), Positives = 258/528 (48%), Gaps = 91/528 (17%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
AKS+FLA +SHEIRTPMNGV+GM ++L+D+ L+ Q++Y Q SG++L+++IN++LD
Sbjct: 346 AKSEFLAMMSHEIRTPMNGVIGMTELLIDSNLNTEQKEYAEIIQKSGESLLNIINDILDY 405
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+ESG L LE F++ +++VL LF ++ K ++L Y+ VP+ ++ D R +Q
Sbjct: 406 SKIESGTLSLEIREFSVIETIEEVLDLFRSRAAQKQIDLVYYLDPNVPDRILCDSLRLKQ 465
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
I+ NL+GN++KFTE+G IF LS+ + L G
Sbjct: 466 ILINLIGNALKFTEQGEIF------------------LSAEVSKLEG------------- 494
Query: 616 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
L ++ S+ DTG GIP E Q +F PF QV S +R +GGTG
Sbjct: 495 -----------------KLYTILFSIRDTGIGIPSEKQKELFQPFYQVDTSSTRKYGGTG 537
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-TAVFGNGSSTSNEHNSQQMNNQPNSVSS 734
+GLSIS L+ M G I S N+G+TF+F V GN + E + +S
Sbjct: 538 LGLSISSRLIEMMGGIIWVESELNVGTTFSFYIQVEGNNQAKIKEK----------AANS 587
Query: 735 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEV 794
E + K L++D P K+ Y +Q LG L ++ SK + L++ E+
Sbjct: 588 ELENKKVLILDDNPTNLKILAYQLQILG------------LITFSAKSKEEALNLLDLEI 635
Query: 795 --------WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+ S +RK F L LL++S + + G +
Sbjct: 636 MPDLGILDYNLPGSTGIEIAQEMRK--RNFHFPLVLLSSSFLDPK-DKEIAGELFAGELS 692
Query: 847 KPLRSSMLAASLQRAMGVGN---KGNIRNWELPSMSLRHLLLGR---KILIVDDNNVNLK 900
KP++ + + + G K N R+ L + +L + KI++ +DN +N
Sbjct: 693 KPVKKKDIERIVTEILAEGGSKAKANTRSSYLAGQ--KEILSSQFPFKIMVAEDNEINQT 750
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+A +++ G + V GK+A + + + + FMD+ MPEMDG +
Sbjct: 751 LAKRIIQKLGYEPLIVPNGKEAL-IALREKKINLIFMDVHMPEMDGLQ 797
>gi|365538843|ref|ZP_09364018.1| GacS/BarA family sensor protein [Vibrio ordalii ATCC 33509]
Length = 1320
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 166/527 (31%), Positives = 258/527 (48%), Gaps = 72/527 (13%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ E K+ A+A AK FLA +SHEIRTPMN +LGM + ++TEL+ TQQ Y+ S
Sbjct: 593 LREAKETADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTELNPTQQKYISRINESA 652
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
K L+ +IN++LD +K+E+GKL +E + F+L +LD++ +L S K+Q+K +E + I +
Sbjct: 653 KNLLGIINDILDFSKIEAGKLNVEHIDFSLDEVLDNLTTLISLKAQEKNIEFLLDIDPHI 712
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P L+GDP R Q++ NL GN++KFTE+G I V+V +V
Sbjct: 713 PVGLVGDPLRLGQVLVNLCGNAVKFTEQGEIIVSVRVV---------------------- 750
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
G N + L +V DTG GI +F+ F Q
Sbjct: 751 -----------GQNDAN---------------VTLKFTVYDTGIGIAESNIGTLFSAFSQ 784
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
SI+R +GGTG+GLSISK LVG M G+I S GSTF FT G +
Sbjct: 785 ADNSITRQYGGTGLGLSISKQLVGLMGGDIQVRSEEGSGSTFEFTIECGLQEA------- 837
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
+M + + + G +ALVVD + + + + + VS+ + L +I +
Sbjct: 838 -KMRDIAKPLIA-LAGKRALVVDDNDSARNILMTLLNAMHFEAKSVSNGFEALDEIRNTH 895
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTSTDGV 839
+M+ ++ W + ++ LG +K FL+ IS N+
Sbjct: 896 --FDMMFID---WNMPGMNGIELLQRMKSLGDFDNTKRFLVTAYGREISLVGENSKL--- 947
Query: 840 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 899
+ ++I+KP+ S L ++ + G+ I E +R +G+K+L+V+DN VN
Sbjct: 948 -VDALIVKPVNPSNLLDAIMDSYGIEQLRKIH--EHLDYDIRPSFMGQKVLLVEDNVVNQ 1004
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+VA L+ ++V G++A L FD MD+QMP MDG
Sbjct: 1005 EVALGLLESTQLSIVVANNGQEALTKLQ-QEAFDLVLMDMQMPIMDG 1050
>gi|421320958|ref|ZP_15771515.1| sensory box protein [Vibrio cholerae CP1038(11)]
gi|421335208|ref|ZP_15785675.1| sensory box protein [Vibrio cholerae CP1048(21)]
gi|395923940|gb|EJH34751.1| sensory box protein [Vibrio cholerae CP1038(11)]
gi|395937069|gb|EJH47792.1| sensory box protein [Vibrio cholerae CP1048(21)]
Length = 1317
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 259/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 578 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 637
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 638 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 697
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 698 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 746
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 747 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 769
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 770 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 827
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 828 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 877
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
K +M+ V+ W + ++ LG K FL +++ + DG
Sbjct: 878 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFL----VTAYGREINLDG 928
Query: 839 VS---IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ + ++I+KP+ S L ++ + G+ + + N + R G+ +L+V+DN
Sbjct: 929 ENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 986
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 987 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 1036
>gi|376007484|ref|ZP_09784679.1| Multi-sensor hybrid histidine kinase [Arthrospira sp. PCC 8005]
gi|375324120|emb|CCE20432.1| Multi-sensor hybrid histidine kinase [Arthrospira sp. PCC 8005]
Length = 1493
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 183/614 (29%), Positives = 286/614 (46%), Gaps = 115/614 (18%)
Query: 389 ISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEI 448
+++ +GI + + + + V +E + E K AE A AKS+FLAT+SHEI
Sbjct: 687 VASQVGITIAQA---KLLEVEVKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEI 743
Query: 449 RTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 508
RTPMN V+GM +L+D EL Q+D+V T + SG AL+++IN++LD +K+ESGKLELE
Sbjct: 744 RTPMNAVIGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQ 803
Query: 509 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT 568
F LR L++ L L SG++ +KG+ELA I P+T++GD R RQ++ NL+ N+IKFT
Sbjct: 804 PFKLRNCLEECLELLSGRAAEKGLELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFT 863
Query: 569 EKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFK 628
+G + + V K + D K
Sbjct: 864 SEGEVILAV--------------------------------------KATHPDAKKDVKK 885
Query: 629 SSSADLIN----LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 684
S +D L V DTG GIP + R+F F QV S +R +GGTG+GL+IS+ L
Sbjct: 886 SDDSDFTESHYVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRL 945
Query: 685 VGRMKGEIGFVSIPNI-------------------------------GSTFTFTAVFGNG 713
M G++ S N+ GS F FT V
Sbjct: 946 SQLMNGKMWVASWVNLLDEYHDETSSLISSVAGNPPPDFVRPQVFRPGSIFYFTIVCSGF 1005
Query: 714 SSTSNEHNSQQMNNQPN--SVSSEF-QGMKALVVDPRPIRAKVSRYHIQRLG---IQVEV 767
N P+ S +F G K L+V+ I K+ ++ G ++V+
Sbjct: 1006 -------------NTPDLGEFSDDFLHGKKVLIVEHHDINQKLLIRQVKSWGMVPVRVKT 1052
Query: 768 VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK--LGCGFQSKLF--LL 823
+D L+ L + +++I++ + + D + + L K + ++ K F ++
Sbjct: 1053 GADALKVLHD----NPGLDLIILGINLPDMDEATLASRIRQLEKQMIAGKYRQKPFNLVM 1108
Query: 824 ANSISSSRA--NTSTDGVSIPSVIMKPLRSSMLAASLQR----AMGVGNKGNIRNWEL-- 875
N S++ GV++ ++ KPL+ S +L + + + +I+N E
Sbjct: 1109 FNYASNTEVLRRLEAQGVNVAGLVNKPLKQSQFYNTLMQIFADSQTIEKHYHIKNAESGY 1168
Query: 876 -PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 934
P++ H L +IL+ +DN N KVA L+R G G + + L Q+D
Sbjct: 1169 DPAIPQPHANL--RILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLEVLDALN-RQQYDV 1225
Query: 935 CFMDIQMPEMDGYE 948
MD+QMPEMDG E
Sbjct: 1226 ILMDVQMPEMDGLE 1239
>gi|281212452|gb|EFA86612.1| histidine kinase [Polysphondylium pallidum PN500]
Length = 1702
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 170/550 (30%), Positives = 264/550 (48%), Gaps = 74/550 (13%)
Query: 404 HIFQATVNR-IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 462
+I +A +N I ++E K+ AEAA AKS F+A +SHEIRTPMNG++GM D+
Sbjct: 1050 NILKAIINEMIHNLKETTIKNTLAKEAAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLT 1109
Query: 463 MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 522
+DTEL+ Q++Y+ Q+S +L+++IN++LD +K+E+G+LEL+ F+LR IL + L
Sbjct: 1110 LDTELNAEQREYLTMVQSSAASLLTIINDILDFSKIEAGRLELDKSDFSLRTILYETLKT 1169
Query: 523 FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 582
+ +S KG+E+ I P+ LIGDPGR RQI+TNL+GN+IKFT +G + +TV L
Sbjct: 1170 LAWRSHQKGLEIICDIIPDTPDHLIGDPGRLRQIVTNLVGNAIKFTAEGEVSLTVKL--- 1226
Query: 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 642
++++ + TL+ + VAD
Sbjct: 1227 --------EDITNGEVTLA-FSVAD----------------------------------- 1242
Query: 643 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 702
TG GIP E IF F Q SI+R +GGTG+GL+IS LV M G++ SIP GS
Sbjct: 1243 -TGIGIPAEKLHLIFEAFSQADGSITRKYGGTGLGLTISTRLVELMGGKLKAESIPGKGS 1301
Query: 703 TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 762
F F A F G + + NS+ M + + L++D +V + G
Sbjct: 1302 RFDFIAKFPLGQAPT--ENSKIM----------LKDVNTLIIDDNKSTRRVLHQMLSEYG 1349
Query: 763 IQVEVVSDQ---LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819
+ + Q L + A + I ++ ++ KD V K F
Sbjct: 1350 VSADTTDSQDSAFHMLREAAMKKQPYEYIFMDAQLNGKD----GFLVAEAIKQDPSFGQA 1405
Query: 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSM 878
++ S R + I + KP+ + +Q K I+ ++
Sbjct: 1406 SIIMLICGSGQRGDPENRSSVISGYLSKPVSPVEMLEVIQ----CSTKPLIKQLQQITRD 1461
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938
+ + + +IL+ +DN VN ++A L+R+G V E G +A FD MD
Sbjct: 1462 TPQPAPIQSEILLAEDNVVNQRLAIRLLERFGHKVTLAENGLQAVA-ASEMKDFDLILMD 1520
Query: 939 IQMPEMDGYE 948
+QMP M G+E
Sbjct: 1521 VQMPHMGGFE 1530
>gi|452962749|gb|EME67856.1| multi-sensor hybrid histidine kinase, partial [Magnetospirillum sp.
SO-1]
Length = 914
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 169/591 (28%), Positives = 273/591 (46%), Gaps = 81/591 (13%)
Query: 369 FRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH--IFQATVNRIAKVEEDYHGMMEL 426
R E+R K + +P+ +G+ + ++ G A++ + + + ++
Sbjct: 118 MRDRELRGVRKDGSEFPV-----EVGLSRLPAIGGRGLCVCASIRDVTERKRVEAEVLRA 172
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AE A AKS FLA +SHEIRTPMN ++GM + + T LD Q++Y+ SG+ L+
Sbjct: 173 KQTAEEATKAKSDFLANMSHEIRTPMNAIIGMSHLALQTRLDKKQRNYIEKVHRSGENLL 232
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN++LD +K+E+GK+ +E + F L ++D++ SL K++DKG+EL ++ +P L
Sbjct: 233 GIINDILDFSKIEAGKMAMERIDFRLEDVMDNLASLVGLKAEDKGLELLFSVASDIPTAL 292
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R Q++ NL N++KFTE G I V E+V E E EL
Sbjct: 293 TGDPLRLGQVLINLGNNAVKFTETGEIIVGA----ELVGRTETEAEL------------- 335
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
H W V D+G G+ E ++F F Q S
Sbjct: 336 ---HFW----------------------------VRDSGIGMTPEQCGKMFQSFSQADSS 364
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+ISK LV M G I S P GS F F H +
Sbjct: 365 TTRKYGGTGLGLAISKTLVELMGGRIWVESEPGKGSVFHF-------------HTRLGVQ 411
Query: 727 NQPNS----VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
QP + S E G++ LVVD ++ + G++V D Q L +A+
Sbjct: 412 AQPAARRVFRSDELMGLRVLVVDDNASAREILSSMAKGFGLEVGTAWDGRQALEMVAAAE 471
Query: 783 K---IINMILVEQEVWEKDTSVSTLFVNNL-RKLGCGFQSKLFLLANSISSSRANTSTDG 838
++IL++ W+ V L R + + + A + +N G
Sbjct: 472 ARGLAYDLILMD---WKMPVMDGVEAVQQLQRDRSERVPAVVMVTAYGREEAMSNAQERG 528
Query: 839 VSIPSVIMKPLRSSMLAASLQRAM--GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 896
+ +V+ KP+ ++ L ++ + GV + +++ L G ++L+V+DN
Sbjct: 529 AVLKTVLTKPVTAASLLEAIGEILGKGVAAESYVQDRAETYKEAMRALEGSRVLLVEDNE 588
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
+N ++A L + G VV G+ A ++L FD MD QMP MDGY
Sbjct: 589 MNQELATELLSQAGMEVVLANHGQAALDILAGDRGFDGVLMDCQMPVMDGY 639
>gi|158338408|ref|YP_001519585.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
gi|158308649|gb|ABW30266.1| two-component hybrid sensor and regulator [Acaryochloris marina
MBIC11017]
Length = 1076
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 167/524 (31%), Positives = 266/524 (50%), Gaps = 60/524 (11%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K +A+AA KS+FLA +SHE+RTPMN V+GM +L T LD QQD+V T ++SG AL+
Sbjct: 541 KDRADAASQVKSEFLANMSHELRTPMNAVIGMTGLLTHTSLDAQQQDFVDTIRSSGDALL 600
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
LIN++LD +K+E+GKLE+E FNL++ +++ L L + ++ KG+E+A +P +
Sbjct: 601 CLINDILDFSKIEAGKLEVEEQPFNLKSCIEEALKLVAPRAFKKGLEIAYLADPDLPCGI 660
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R RQ++ NL+ N +KFT+ G + V V+EV I+
Sbjct: 661 VGDVTRLRQVLVNLLTNGVKFTDNGEVIV---YVKEVTAEIQ------------------ 699
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+++GS S +S L +V+DTG GIP + +R+F F QV S
Sbjct: 700 ------------DREGSGSEGQSPRR-LFQF--AVKDTGIGIPEDRLNRLFQSFSQVDSS 744
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+ISK L M G+I S IGSTFTFT + +
Sbjct: 745 TTRKYGGTGLGLAISKRLCELMGGKIWVDSEIGIGSTFTFTIAAPIADT---------FD 795
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
P + +G + L+VD K+ G+ + L ++ G +
Sbjct: 796 CAPIHDLAPLKGQRLLIVDDNLTNRKILTKFANIWGMYSQAAPSGPAAL-ELLRGRSSFD 854
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+ +V+ ++ E D ++ L+K ++ ++ +S+ +T D +++
Sbjct: 855 LAVVDMQMPEMDGLTLARRIHGLQK----YKDLPLVMLSSLGVEAISTPMDKSLFYAILN 910
Query: 847 KPLRSSMLAASLQRAMGVGNKGNIRNWEL----PSMSLRHLLLGRKILIVDDNNVNLKVA 902
KP++ + L+A L RA+ ++ N +N E PS + + L +L+ +D VN KVA
Sbjct: 911 KPIQEAQLSAILVRAVTRQSE-NTQNSEFDCPQPSTNSKTL----HLLLAEDVVVNQKVA 965
Query: 903 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
LK+ G GK+ E L +D MD+QMPEMDG
Sbjct: 966 LLILKQLGYEADVANNGKEVLEALH-RQPYDVVLMDLQMPEMDG 1008
>gi|443535096|ref|ZP_21100989.1| sensory box protein [Vibrio cholerae HC-80A1]
gi|443461711|gb|ELT32769.1| sensory box protein [Vibrio cholerae HC-80A1]
Length = 1314
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 259/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 575 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 634
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 635 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 694
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 695 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 743
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 744 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 766
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 767 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 824
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 825 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 874
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
K +M+ V+ W + ++ LG K FL +++ + DG
Sbjct: 875 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFL----VTAYGREINLDG 925
Query: 839 VS---IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ + ++I+KP+ S L ++ + G+ + + N + R G+ +L+V+DN
Sbjct: 926 ENSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 983
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 984 EVNQEVALGLLQDTGLNVVVANHGQEALERLEHA-DFDLVLMDMQMPVMDG 1033
>gi|149189915|ref|ZP_01868194.1| sensory box histidine kinase/response regulator [Vibrio shilonii
AK1]
gi|148836230|gb|EDL53188.1| sensory box histidine kinase/response regulator [Vibrio shilonii
AK1]
Length = 1202
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 165/534 (30%), Positives = 268/534 (50%), Gaps = 87/534 (16%)
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
+ + A AKS FLA +SHEIRTPMN ++GM + ++T+LD Q+ Y+ +S +AL+ +
Sbjct: 481 QTQNASQAKSDFLANMSHEIRTPMNAIIGMSHLALETKLDNKQRHYISKVNSSAQALLGI 540
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
IN++LD +K+E+GK+E+E+++F+L ++L++V+SL ++ K + L + ++ VP+ LIG
Sbjct: 541 INDILDFSKIEAGKVEIESINFSLDSVLEEVISLIDDSAKQKKLSLIIDVASDVPDQLIG 600
Query: 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
DP R +Q++TNL N++KFTE G + V V
Sbjct: 601 DPLRIKQVLTNLTSNAVKFTETGEVRVKV------------------------------- 629
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
ST+ + IN +V+DTG G+ E +F F Q S +
Sbjct: 630 --------------STAMMRERECK-INF--AVKDTGIGMTREQIDSLFQSFSQADSSTT 672
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 728
R +GGTG+GLSI+K LV M G++ S G+ F+F+ V G S + Q+ +Q
Sbjct: 673 RKYGGTGLGLSITKNLVELMGGKVSVESRLGEGARFSFSLVLGVSESNATVFYPAQLQSQ 732
Query: 729 PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMI 788
K ++D +V ++R+ +V+ D Q S + G I N++
Sbjct: 733 -----------KLALIDSSKESEQVVLSQLERIQCKVDSYRDLDQLESALNQGKTIPNVV 781
Query: 789 LVEQEVWEKDTSVSTLFVNNLRKLGCG-FQSKLFLLANSISSSRAN-----TSTDGVSIP 842
L W + S + + ++R+ +KL +L S SR + TD + +
Sbjct: 782 LYG---WRNEVSDNIETILSMRERAPQVLTAKLIILC---SDSRQDIIEALEETD-IQVA 834
Query: 843 SVIMKP-----LRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL---GRKILIVDD 894
SV+ KP L +++AA+L + VG ++ S L+ L G K+L+V+D
Sbjct: 835 SVLEKPFTASTLHDALIAAALNESPRVG------HYRSHSEELKRALASLQGAKVLLVED 888
Query: 895 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
N +N +VA L+ G +V VE G++A L +D MD QMP MDGYE
Sbjct: 889 NTINQEVARELLQSKGLSVDVVENGQEAVTSL-QSEIYDGVLMDCQMPIMDGYE 941
>gi|315649482|ref|ZP_07902567.1| histidine kinase [Paenibacillus vortex V453]
gi|315274955|gb|EFU38330.1| histidine kinase [Paenibacillus vortex V453]
Length = 559
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 144/449 (32%), Positives = 239/449 (53%), Gaps = 60/449 (13%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
++E+ H +++ K+ AE A AK++FLA +SHEIRTPMNGV+GM+D+LMD+EL Q++Y
Sbjct: 147 ELEKINHELVQAKEAAEIAVKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSELQEEQREY 206
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
+ S ALV++IN++LD +K+ESGK+ELE F+L++ + +V LFSG++ K ++L
Sbjct: 207 ATIIRNSADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLQL 266
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ YI +R+P + GD GR RQ++ NL+ N++KFT +G +++ V L T++
Sbjct: 267 SYYIEERIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSL-----------TQVE 315
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
+ TL +V+DTG GI E
Sbjct: 316 EDRLTLE-------------------------------------FTVKDTGIGISSEKID 338
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
R+F PF Q+ S++R +GGTG+GL+I + LV M G+I S N G+TF FT
Sbjct: 339 RLFKPFSQLDSSMTRKYGGTGLGLAICRSLVQMMGGDITVESKENKGATFVFTMCV---- 394
Query: 715 STSNEHNSQQMNNQPNS---VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 771
T E + ++ ++P V E Q L+VD PI K+ ++++G+ ++ D
Sbjct: 395 HTYEEGDYRRREDEPTDKFRVHGERQA-NILIVDDHPINRKLMDSMLKKMGMSADMAEDG 453
Query: 772 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
Q + +A G K+ ++I ++ ++ D + + + K G + + AN + +
Sbjct: 454 KQAVDMVA-GPKVYDIIFMDLQMPVMDGLEAARLIRQM-KHGADAPILVAMTANVMDGIQ 511
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQR 860
S G+ I KP++ S + L R
Sbjct: 512 KRCSDAGMD--EYISKPVKISCVKHLLSR 538
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
ILIVDD+ +N K+ + LK+ G + E GK+A +++ P +D FMD+QMP MDG E
Sbjct: 423 ILIVDDHPINRKLMDSMLKKMGMSADMAEDGKQAVDMVAGPKVYDIIFMDLQMPVMDGLE 482
>gi|315127393|ref|YP_004069396.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas sp. SM9913]
gi|315015907|gb|ADT69245.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas sp. SM9913]
Length = 924
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 160/521 (30%), Positives = 249/521 (47%), Gaps = 72/521 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A+ KS FLA +SHE+RTP+NGV+G L T L+ Q+DY+ T + S +L+
Sbjct: 280 KKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKTPLNKNQKDYLDTIELSANSLM 339
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++I+++LD +K+E+G +ELE++ F LR +++V++L + + DK +EL++YI+ +VP+ L
Sbjct: 340 TIISDILDFSKLEAGAMELESIQFQLRDSVNEVMTLLAPSAHDKQLELSIYINPQVPDHL 399
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP RF+Q++ NL+ N+IKFTEKG I +++ L + T VA
Sbjct: 400 TGDPTRFKQVLINLLSNAIKFTEKGAI------------KVDISHRLLDEERTSVLVSVA 447
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D TG GIP + Q +FT F Q S
Sbjct: 448 D------------------------------------TGVGIPADKQDALFTAFGQADSS 471
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R GGTG+GL I+K++V M G I S P G+ FTF VF N +N
Sbjct: 472 ITRKFGGTGLGLIITKHIVEAMSGRITLNSAPGSGTCFTFNGVF-------RLPNHVFIN 524
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+ P + G + L ++P +Q + V ++ + L I + +
Sbjct: 525 DLP---TQSLIGKRVLYLEPHKHTHHAVASLLQEWKVSVTPCYNETEFLECIKNSEINFD 581
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+ L+ D +V +R+ L+L+ N++S + G + +
Sbjct: 582 ICLIGHMASVDDMQRLKSYVKAVRE----STDYLYLMLNTVSHNMREAFI-GSGADACLS 636
Query: 847 KPLRSSMLAASLQRAMGVGNKG-NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905
KPL L L + + NI E LL K+L+VDDN+ NLK+
Sbjct: 637 KPLNHRKLCELLAAPYRLDHPAHNIEQHE-------QTLLPLKVLVVDDNDANLKLIYTL 689
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
L + G +A L H++D FMDIQMP MDG
Sbjct: 690 LNEQVELIDTAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDG 729
>gi|390449516|ref|ZP_10235121.1| two-component sensor/response regulator hybrid [Nitratireductor
aquibiodomus RA22]
gi|389664013|gb|EIM75524.1| two-component sensor/response regulator hybrid [Nitratireductor
aquibiodomus RA22]
Length = 764
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 157/534 (29%), Positives = 250/534 (46%), Gaps = 76/534 (14%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
++ + +AE A AKS FLATVSHEIRTPMNG++GM +L DTEL Q+ YV S
Sbjct: 241 LINARVRAEQASRAKSSFLATVSHEIRTPMNGIMGMATLLADTELTPEQRTYVGAVSTSA 300
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
ALV+LI ++LD +K+E+G+LELE + + ++++V+ L + ++ K + L YI+ V
Sbjct: 301 SALVALIEDLLDYSKIEAGRLELEPQTLAVNELVENVVELLAARAFAKNIGLGCYIAPDV 360
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
PET+ DPGR RQ++ NL+GN++KFT++G + V V E+ +G
Sbjct: 361 PETITADPGRLRQVLINLLGNALKFTDEGGVTVAVSRAEK------------------NG 402
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
P L ++V D+G G+ + +RIF F Q
Sbjct: 403 APA-------------------------------LRIAVSDSGPGLEKDDINRIFKDFEQ 431
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +R HGG G+GL+I+K +V M G I S P GS F G +
Sbjct: 432 VDGSSTRRHGGAGLGLAITKRIVDAMNGSISVASTPGEGSEFAVLLPLGAEA-------- 483
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
++ V + + A+++ P A+ ++ G + + +
Sbjct: 484 ----DEAGRVEPVLEEVNAVILSPFAQEAETIAMTVRVHGGRAAIAATAEDAARLAEESG 539
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
+ N +LV+ + D + + L LG G L L+ S G
Sbjct: 540 RPFNTVLVDASLESDDGA----LITRLHALGVGGDRALTLITPSERGRLPAFRASGYG-- 593
Query: 843 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK-----ILIVDDNNV 897
+ + +P+R L L++ +G ++ E + +GR+ IL+ +DN +
Sbjct: 594 AFLARPVRGRTL---LRQLLGSKSEATWPAAETHDRTHDAGTMGRRAGGLNILVAEDNEI 650
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QFDACFMDIQMPEMDGYEML 950
N +A A L R G V V G++A E + P +FDA MD+ MP MDG + +
Sbjct: 651 NAMLARAALSRAGHRVTLVSNGREAVEAVSAPGTRFDAVLMDLHMPVMDGLDAI 704
>gi|264677650|ref|YP_003277556.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
gi|262208162|gb|ACY32260.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
Length = 1755
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 170/548 (31%), Positives = 259/548 (47%), Gaps = 76/548 (13%)
Query: 410 VNRIAKVEEDYHGMMEL-KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD 468
+N+ + + + +EL +++AE A+VAKSQFLA +SHEIRTPMN VLGML ++ T+LD
Sbjct: 995 INQDITIRKQFENSLELARQQAEQANVAKSQFLANMSHEIRTPMNAVLGMLQLVRQTQLD 1054
Query: 469 VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQ 528
QQDYV AQ++ ++L++L+N++LD +K+++GKLEL+ +F+L +L ++ + SG
Sbjct: 1055 TRQQDYVVKAQSAAQSLLALLNDILDFSKIDAGKLELDIHAFSLEDMLRELAVVLSGNQH 1114
Query: 529 DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 588
K VEL + +P + GD R QI+ NL GN++KFTE G + +
Sbjct: 1115 HKTVELMFEVDPSLPLEVRGDKLRILQILINLGGNALKFTEAGQVVIH------------ 1162
Query: 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 648
QD ++ + L VSV DTG GI
Sbjct: 1163 --------------------------LSALRQDAAS----------VTLQVSVTDTGIGI 1186
Query: 649 PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708
E SRIF F Q S +R GG+G+GL I + LV M E+ S P GS F+F
Sbjct: 1187 TPEQLSRIFNGFTQAESSTTRRFGGSGLGLVICQRLVALMGSELRVDSEPGRGSCFSFEL 1246
Query: 709 VFGNGSSTSNEHNSQQMNNQPNSVS---SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 765
++ N+ S+S + LVVD I ++ I+ G
Sbjct: 1247 CL-------------EVENKALSISVVAPDISHCHVLVVDDCEISREILVKTIEMRGWSC 1293
Query: 766 EVVSDQLQCLSQIASGSKI---INMILVEQEVWEKD-TSVSTLFVNNLRKLGCGFQSKLF 821
+ V + L +I S K +++LV+ + E D + + L + C L
Sbjct: 1294 DAVESGAKALVKIISALKAGRPYDVVLVDWRMPEMDGVATAKLIKQQFPDVACPVVIMLS 1353
Query: 822 LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR 881
+ + D V ++ KP+ L AS+ RA + ++ P L
Sbjct: 1354 AYGRELLGK--ISEQDRVIFRDILTKPITPQQLIASIARARQPAQRDSLP----PVFELP 1407
Query: 882 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL-LMPPHQFDACFMDIQ 940
L G ++L+V+DN +N +VA L GA+VV E G + + P FD MDIQ
Sbjct: 1408 QRLAGVRLLLVEDNALNRQVAGELLTHEGASVVMAEDGLQGVRIATQQPDAFDIIIMDIQ 1467
Query: 941 MPEMDGYE 948
MP MDG +
Sbjct: 1468 MPVMDGLQ 1475
>gi|153825247|ref|ZP_01977914.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MZO-2]
gi|149741075|gb|EDM55134.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MZO-2]
Length = 1331
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 258/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 761 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 842 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 892 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R +G+ +L+V+DN
Sbjct: 947 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFVGQSLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 1050
>gi|238920900|ref|YP_002934415.1| signal transduction histidine-protein kinase BarA, putative
[Edwardsiella ictaluri 93-146]
gi|238870469|gb|ACR70180.1| signal transduction histidine-protein kinase BarA, putative
[Edwardsiella ictaluri 93-146]
Length = 918
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 167/523 (31%), Positives = 260/523 (49%), Gaps = 81/523 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G +M T L TQ DY+ T + S L+
Sbjct: 278 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVMKTPLSATQIDYLHTIERSANNLL 337
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE + F LR +D+V +L + + DKG+EL + + + VPE +
Sbjct: 338 TIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVHNDVPEHV 397
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R +Q++TNL+GN+IKFTEKG+I + + L + ++E+E ++ +G ++
Sbjct: 398 LGDPMRLQQVLTNLLGNAIKFTEKGNIDIRIELRSQTSQAVELEIQVHD-----TGIGIS 452
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+R QS++F F Q S
Sbjct: 453 ER-------------------------------------------QQSQLFQAFRQADAS 469
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R HGGTG+GL I++ L+ M G+I F S P+ GSTF F H ++N
Sbjct: 470 ITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGSTFWF-------------HIRLELN 516
Query: 727 NQ--PNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 783
+ P S+ E QG L ++ P+ A+ + ++ +QV +Q+ S
Sbjct: 517 HNAPPASLPVERLQGQTLLYIESNPVAAQCTLDMLKVTPLQVTYCPQ----FTQVIPDSH 572
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
+++L V TS+ST + L ++ L S + ++T I S
Sbjct: 573 -YDILLFGLPV---KTSLSTESMQEKLSLALRLADRVILALPSHTLHDSDT-LKAAGIRS 627
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
+ KPL SS L +L + N +R ++ S L L ++ VDDN NLK+
Sbjct: 628 CLFKPLASSRLLPAL-----LDNALPLRAPQVISPHGARLPL--TVMAVDDNPANLKLIG 680
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L ++ G++A H D MDIQMPEMDG
Sbjct: 681 ALLGELVQHILLCHSGEEALAAARDRH-LDIILMDIQMPEMDG 722
>gi|262274200|ref|ZP_06052012.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
gi|262222010|gb|EEY73323.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
Length = 1343
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 166/539 (30%), Positives = 263/539 (48%), Gaps = 64/539 (11%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
V + ++E D ++ K +A A AK +FLA +SHEIRTPMN +LGM + + T+L+
Sbjct: 572 VTKQKRLESD---LIAAKDQATEASKAKGEFLANMSHEIRTPMNAILGMSHLALLTDLND 628
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q++YV + +GK+L+ +IN++LD +K+E+GKL +E V F +LD++ ++ S K+++
Sbjct: 629 KQRNYVGNIEKAGKSLLGIINDILDFSKIEAGKLSVEHVDFRFSEVLDNISNIISVKAKE 688
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K +EL I +P+ L+GDP R QII NL GNS+KFTE G I + V +V + IE+
Sbjct: 689 KELELIFDIDPNLPDDLVGDPLRLGQIIINLTGNSVKFTESGEIIIRARKVTDVNEIIEI 748
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ + +EDTG G+
Sbjct: 749 QFD------------------------------------------------IEDTGIGMN 760
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
E R+F F Q SI+R +GGTG+GL+ISK V M G I S P GSTF+FT
Sbjct: 761 EEQLGRLFQSFSQADGSITRKYGGTGLGLTISKSFVELMGGRIWVESQPGKGSTFSFTIR 820
Query: 710 FGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS 769
G +S+ E ++ ++ + LVVD + + L ++V VS
Sbjct: 821 CGRSNSSIKEQIAK---------TTILNDKRVLVVDDNQASRDIMYALLDNLDLRVAAVS 871
Query: 770 DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL-ANSIS 828
+ + + ++ S + V W+ +R+L K+ L A +
Sbjct: 872 NGEEAVYEVESADLSNDGFDVVVMDWKMPGINGDEATVKIRELSLNKMPKVILASAYGEN 931
Query: 829 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL-LLGR 887
S N V S++ KP+ S L +L A G + E ++ +H+ L G
Sbjct: 932 SGLINEEVQNVFDASLV-KPINPSSLFDALMEAFGQLEMKRANSREAETIKTQHVDLTGI 990
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
KIL+V+DN +N +VA L+++ + + G+ A + + H FD MD+QMP MDG
Sbjct: 991 KILLVEDNMINQEVAKGILEQFNPTIEVADNGQVALDRVQKEH-FDIVLMDMQMPVMDG 1048
>gi|86606313|ref|YP_475076.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-3-3Ab]
gi|86554855|gb|ABC99813.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-3-3Ab]
Length = 1459
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 179/549 (32%), Positives = 275/549 (50%), Gaps = 76/549 (13%)
Query: 399 ASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGM 458
ASL G + A I ++ M + AEAA+ AKS+FLAT+SHEIRTP+N ++GM
Sbjct: 786 ASLAGSLVYAAGRDITLAKQAQEQMKAAMEAAEAANRAKSEFLATISHEIRTPINAIMGM 845
Query: 459 LDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 518
+L+DT LD Q+D+V+T + + L+SLIN++LD +K+ES KLELE F+L ++++
Sbjct: 846 AGLLLDTSLDAQQRDWVQTIRYGSEVLLSLINDILDFSKIESQKLELEETPFSLPQLMEE 905
Query: 519 VLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVY 578
+L L + ++Q K +EL ++ +P TL+GDP R RQI+ NL+ N+IKFT +G + VTV
Sbjct: 906 LLDLMAAQAQSKDLELVAWVDPALPATLVGDPNRLRQILANLLSNAIKFTPQGEVVVTVE 965
Query: 579 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLI 638
+E +V+ W F+
Sbjct: 966 -AQEQDPQAQVQ---------------------WVSFQ---------------------- 981
Query: 639 VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 698
V+DTG GIP E Q R+F PF QV SISR +GGTG+GL+IS+ L M G I S P
Sbjct: 982 --VQDTGIGIPPEKQDRLFKPFSQVDSSISRQYGGTGLGLAISQRLCQLMGGTIWVQSQP 1039
Query: 699 NIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHI 758
GSTF F + + P G + L+V+ + ++ +
Sbjct: 1040 GQGSTFGFRIPLKLPDAA--------LWATPTP-DPALAGQRVLLVEDNASQRQLLARLL 1090
Query: 759 QRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKD-TSVSTLFVNNLRKLGCGFQ 817
Q G+QV S + +Q + ++ + LV+ + + D +++ L
Sbjct: 1091 QSWGMQVTACSTVAE--AQAIAKAQTFELALVDTSLPDGDGLALARALQQEQPPL----- 1143
Query: 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 877
+L LL + RA ++ G S+P+ + KP+R+S L A L + +++ +LP
Sbjct: 1144 -RLVLLVD----RRAALASAG-SLPA-LGKPVRASQLRALLGQEKVPAAASHLKP-QLPL 1195
Query: 878 MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937
S L +IL+ +DN VN KV L+R G V G +A + L +D M
Sbjct: 1196 ASRCPL----RILVAEDNPVNQKVIRLMLERLGYQPDIVANGLEALQALQ-LRAYDLVLM 1250
Query: 938 DIQMPEMDG 946
D+ MPE+DG
Sbjct: 1251 DLHMPELDG 1259
>gi|381160280|ref|ZP_09869512.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380878344|gb|EIC20436.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1306
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 168/566 (29%), Positives = 279/566 (49%), Gaps = 74/566 (13%)
Query: 405 IFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 464
IF+ + + V D G+ + ++ AE A+ +KSQFLA +SHEIRTPMN V+G+ D+L+
Sbjct: 539 IFKLSSGEVVAVYNDLTGIKQAQEAAERANRSKSQFLANMSHEIRTPMNAVIGLSDLLLH 598
Query: 465 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 524
T LD Q+DY+ + S + L+ +IN++LD +K+E+GKLELE+ SF L +LD + +LF+
Sbjct: 599 TPLDSKQRDYLGKIRNSSRMLLGIINDILDYSKIEAGKLELESQSFRLEDLLDQMRTLFA 658
Query: 525 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 584
+ G+EL + P TL GD R Q++TNL+ N+IKFTE+G + +++
Sbjct: 659 AAADASGIELIFELDIHHPRTLEGDALRLAQVLTNLLSNAIKFTERGQVTLSIR------ 712
Query: 585 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644
E LS+++ L TF +V DT
Sbjct: 713 -----EQGLSNAEMQL----------------TF---------------------AVRDT 730
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GI Q R+F F Q S +R +GGTG+GL IS+ L+ RM GE+ S P GSTF
Sbjct: 731 GIGIEPAQQERLFKAFSQADSSTTRKYGGTGLGLVISQRLIERMGGELRVESRPGQGSTF 790
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 764
+FT + + + + G + LVVD V R ++
Sbjct: 791 SFTITLPVTTEDATHPAAGLI----------CPGTRVLVVDDHEAARTVLRGILESHDAD 840
Query: 765 VEVVSDQL---QCLSQIASGSKIINMILVEQEVWEKDTSVSTL-FVNNLRKLGCGFQSKL 820
VE + L Q + + + IL++ ++ + + TL + LR G Q +
Sbjct: 841 VEEADNGLSAIQAVQRAEQANAPFAFILMDWKMPGELDGIQTLERLQALRDSGELRQDAI 900
Query: 821 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM-GVGNKGNIRNWELPSMS 879
L S + ++ + + + + KP+ L ++ +A+ G ++ +I P+
Sbjct: 901 PALIVS-AYNQDDLAPHATLYRAFLSKPITPRALLDTIGQALSGPDDRADI-----PAAR 954
Query: 880 LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939
+ +L+V+DN +N +VA A +++ ++ E G++A + L+ H+ D MD+
Sbjct: 955 ALPCFSEQTVLLVEDNALNQEVACAIMEKTQVRIILAENGREAVD-LVSQHKVDLILMDL 1013
Query: 940 QMPEMDGYE----MLPCFESFLLIAI 961
QMP MDG+E + P F ++A+
Sbjct: 1014 QMPVMDGFEASRRIRPHFPELPIVAL 1039
>gi|315125188|ref|YP_004067191.1| sensor protein [Pseudoalteromonas sp. SM9913]
gi|315013701|gb|ADT67039.1| sensor protein [Pseudoalteromonas sp. SM9913]
Length = 1117
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 166/564 (29%), Positives = 276/564 (48%), Gaps = 87/564 (15%)
Query: 395 ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 454
++ + +L+G ++ ++ RI E +++ K+ AE A +AKS+FLA++SHEIRTPMNG
Sbjct: 568 LIAVGALIGSLY-SSQQRI----ETEAQLVKAKEAAEQAVIAKSEFLASMSHEIRTPMNG 622
Query: 455 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514
VLGML+++ T+LD Q+ +++ AQ+S ++L+ +IN++LD +K+E+GKL++E + FNL
Sbjct: 623 VLGMLNIVKATQLDQQQKHHIKLAQSSAESLLGIINDILDFSKIEAGKLDIENIQFNLPR 682
Query: 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 574
+L +V+ F+ K++ L + + I DP R RQI++NL+GN++KFT+ G I
Sbjct: 683 LLGEVVESFALKAEQNNTTLILDATHITSSEFISDPNRLRQILSNLIGNAVKFTQNGEIL 742
Query: 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 634
VT + + + D
Sbjct: 743 VTAKI-------------------------------------------------THTLDA 753
Query: 635 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 694
L ++ D+G GI E Q +F F Q S +R +GGTG+GL+I K L M GE+
Sbjct: 754 TVLECAIADSGIGISAEKQPHLFDSFTQADTSTTRQYGGTGLGLAIVKQLCELMSGEVNV 813
Query: 695 VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 754
S PN GSTF+F +H + Q + + V+D + ++
Sbjct: 814 SSTPNKGSTFSF--FIKIIPQLVQQHEAYQA----------IKNKRIWVIDDCLLNTTIA 861
Query: 755 RYHIQRLGIQVEVVSDQLQCLSQIASGSKI-INMILVEQEVWEKDTSVSTLFVNNLRKLG 813
+ + R G +V + D L I S N++LV+ ++E L L++
Sbjct: 862 KKQLTRWGGKVSTICDYLSISDYINSHEDTPPNIVLVDSALFEPLYEAQAL---ALKQFL 918
Query: 814 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR-- 871
S L ++A +S + N +T ++ +++ KPL LQ A+ K I
Sbjct: 919 IKSNSHLIIMA-PMSYTNKN-ATLPLTEETLVFKPLT----PFDLQNALTA--KSTIEQT 970
Query: 872 --NWELPSMSLRHLL---LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 926
+ +L S++ ++ L +L+V+DN +N V AA LK+ E G +A E L
Sbjct: 971 HVDTQLKSLAATEVMTDTLAAHVLLVEDNKINQVVTAAFLKQLNVTFEIAENGAEAVEKL 1030
Query: 927 --MPPHQFDACFMDIQMPEMDGYE 948
P + + MD QMP MDGY+
Sbjct: 1031 NQNPANTYQLILMDCQMPTMDGYQ 1054
>gi|121591221|ref|ZP_01678522.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae 2740-80]
gi|153818352|ref|ZP_01971019.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae NCTC 8457]
gi|227081520|ref|YP_002810071.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae M66-2]
gi|229505068|ref|ZP_04394578.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286]
gi|298498565|ref|ZP_07008372.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MAK 757]
gi|121546919|gb|EAX57070.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae 2740-80]
gi|126511099|gb|EAZ73693.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae NCTC 8457]
gi|227009408|gb|ACP05620.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae M66-2]
gi|229357291|gb|EEO22208.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286]
gi|297542898|gb|EFH78948.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MAK 757]
Length = 1331
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 258/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 761 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 842 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 892 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R +G+ +L+V+DN
Sbjct: 947 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFVGQSLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 1050
>gi|430741730|ref|YP_007200859.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
18658]
gi|430013450|gb|AGA25164.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
18658]
Length = 919
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 167/532 (31%), Positives = 247/532 (46%), Gaps = 78/532 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AEAA AKS+FLA VSHEIRTPMNG++GM ++++DT L QQ+Y+ +S +L+
Sbjct: 239 KEAAEAASRAKSEFLANVSHEIRTPMNGIIGMTELVLDTALSTEQQEYLEVVASSADSLL 298
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+GKLEL+ F+LR L D L + ++ KG+ELA I+ VP+ L
Sbjct: 299 TVINDILDFSKIEAGKLELDRCPFDLRDCLGDALRPLAMRAHQKGLELAFDIAHNVPDAL 358
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGD GR RQI+ NL+GN+IKFT++G + VTV
Sbjct: 359 IGDGGRLRQIVVNLVGNAIKFTDRGEVVVTVG---------------------------- 390
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+W K + L + V DTG GIP IF PF Q S
Sbjct: 391 ---QAWCDGKE-----------------VGLRIEVLDTGIGIPAHRHKAIFAPFEQADGS 430
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
++R GGTG+GLSIS LV M GEI S GSTF+FTA FG G + + +
Sbjct: 431 MTRKFGGTGLGLSISCRLVEMMGGEISLESRIGEGSTFSFTARFGLGVAPAPTTGA---- 486
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
++ + + L+VD ++ R + G++ D L Q+ + + +
Sbjct: 487 ----ALGVDLHDLPVLIVDDNATNRRILRDLTIQWGMRPTTCEDGYGALHQLRHAAAVGD 542
Query: 787 MI-LVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 845
L + TL + L + + GV + +
Sbjct: 543 PFRLAFFDAMMPAMDGFTLLARCRSDRDMAALPIIMLSSAGLQGDAERCREFGV---AYL 599
Query: 846 MKPLRSSMLAASL---------QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 896
KP + S L ++ +A + I + P R L ++L+ +DN
Sbjct: 600 TKPAKQSDLLKAIVDILSDTPSSKAAAALDSSGIASSPAP----RRL----RVLVAEDNP 651
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VN +A L + G V V G++A L FD MD+QMP +DG E
Sbjct: 652 VNQTLAIRLLAKLGHDSVVVGDGRQALNRL-EKGGFDLVLMDLQMPNLDGLE 702
>gi|304309740|ref|YP_003809338.1| histidine kinase [gamma proteobacterium HdN1]
gi|301795473|emb|CBL43671.1| predicted histidine kinase [gamma proteobacterium HdN1]
Length = 895
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 175/579 (30%), Positives = 268/579 (46%), Gaps = 104/579 (17%)
Query: 393 IGILVIASLVGHIFQATVNRIAKVEEDYHGMMELK-----KKAEAADVAKSQFLATVSHE 447
+G++V + H+ A + + A++ YH +E K +K E A+ AKS+FLA +SHE
Sbjct: 328 LGVMVRSYF--HLKDALLRKNAELSA-YHSELEQKVEERTRKLEKANQAKSEFLANMSHE 384
Query: 448 IRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEA 507
IRTPMNGVLGM ++L+ TEL+ QQ Y RT S +L+ +IN++LD +K+E+GKLELE+
Sbjct: 385 IRTPMNGVLGMTELLLGTELNTRQQQYTRTIHNSALSLLGIINDILDYSKIEAGKLELES 444
Query: 508 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKF 567
V FNL ++DD ++FS K K ++L I+ P L+GDP R RQI+ NL GN+ KF
Sbjct: 445 VPFNLEILVDDCTAIFSLKCAQKPIQLTSRIAPGTPIDLVGDPTRLRQILINLTGNAFKF 504
Query: 568 TEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPF 627
TEKG I + + +E+ HS +
Sbjct: 505 TEKGEICIGIEFLED---------------------------HSKQ-------------- 523
Query: 628 KSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGR 687
+ L S+ D+G G+ E ++F F Q S +R +GGTG+GL+I K L
Sbjct: 524 -------VRLKFSIRDSGIGLSEEQIGKLFQSFSQADTSTTRKYGGTGLGLAICKQLAEL 576
Query: 688 MKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPR 747
M+GEIG S G+TF FTA G +S + + + + + G + L+V P
Sbjct: 577 MEGEIGVDSRLGHGATFWFTAWLGVEASPKADPSRKIL-------EASMNGKRLLLVGPA 629
Query: 748 PIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVN 807
++ Q + V V + Q +AS E + +S L +
Sbjct: 630 DHWREIVAERAQAWNMDVSVAENIQQAAGLLASAQ-------------EAEKPISALLLG 676
Query: 808 NLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS--------------VIMKPLRSSM 853
+ + L +S + + T ++P ++ +P
Sbjct: 677 DPAN---ALEQARTLAGHSAYARQKMILTHPANLPPTSPWLREQPLGRYLLLERPTPLQE 733
Query: 854 LAASLQRAMG--VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGA 911
L L RA G + + +L L HL +IL+ +DN VN V LK+ A
Sbjct: 734 LRNLLGRASGADISTSEALSKEQLTLPDLSHL----RILVAEDNKVNQMVIEGLLKKLHA 789
Query: 912 AVVCVERGKKATELL---MPPHQFDACFMDIQMPEMDGY 947
VE G+ A + PP FD MD +MP++DG+
Sbjct: 790 NTTTVENGQLAVDACSTASPP--FDLVLMDCEMPQLDGW 826
>gi|422922661|ref|ZP_16955842.1| sensory box protein [Vibrio cholerae BJG-01]
gi|341645454|gb|EGS69601.1| sensory box protein [Vibrio cholerae BJG-01]
Length = 1331
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 258/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVSRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 761 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 842 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 892 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R +G+ +L+V+DN
Sbjct: 947 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFVGQSLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 1050
>gi|254415604|ref|ZP_05029363.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196177554|gb|EDX72559.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1156
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 162/536 (30%), Positives = 252/536 (47%), Gaps = 75/536 (13%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
++E + A A KS+FLA +SHEIRTP+NGVLGM+ +L+ T+L+ Q +Y RT ++
Sbjct: 408 LVEARDAALATARLKSKFLANMSHEIRTPINGVLGMMRLLLQTDLNPQQLNYTRTIESCA 467
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
K L+++IN++LD +K+E+GK+ LE + F+L + LD V+ + + +++ KG+ELA+ + V
Sbjct: 468 KHLLTVINDILDVSKLEAGKMLLEQIDFSLDSCLDSVIDVLAVQAETKGLELAILVESNV 527
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P L DPGR RQI+ NL+GN+IKFT+ G + V V +
Sbjct: 528 PRQLQSDPGRLRQILLNLVGNAIKFTDAGEVVVRVAV----------------------- 564
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
P + S + L SV DTG GI QS++F F Q
Sbjct: 565 -------------------SRHQPTDTLSQSSVTLRFSVTDTGIGISAADQSKLFQAFSQ 605
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +R +GGTG+GL I + LV + G+IG S GSTF FT
Sbjct: 606 VEASTTRRYGGTGLGLVICQQLVELLGGKIGVESKVGQGSTFWFTV-------------- 651
Query: 723 QQMNNQP----NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+ QP +V + +K LV + R H++ G+Q++ +D + +
Sbjct: 652 -PVKTQPLPPAQAVPLALRQLKLLVTAKNATTRQTVRSHLEAWGMQIDEATDSTSTMDAL 710
Query: 779 ASGSKIIN----MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 834
+ + IL Q + S+ + N S ++ ++
Sbjct: 711 RNAVSRCHPYDVAILDLQLPGSQGESIVPMIRCN-----PSLASTKLIVITTMHQLDTVQ 765
Query: 835 STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KILIV 892
+ + I + KP+++S L SL A V + ++ W+ HL KIL+V
Sbjct: 766 ELESMEILGYLTKPMKASQLWESLLAA--VTPEVDLETWQTTIHQPTHLNDSSHLKILLV 823
Query: 893 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
DD+ +N V L+ G C G +A L +D FMD QMP +DGYE
Sbjct: 824 DDHPINQTVIVNQLQMLGYQPECASNGSEALAKLQ-AQSYDIVFMDCQMPVLDGYE 878
>gi|302037639|ref|YP_003797961.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
gi|300605703|emb|CBK42036.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
Length = 950
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 166/531 (31%), Positives = 250/531 (47%), Gaps = 87/531 (16%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KS FLA ++HE+RTPMNGV+GM +L++T L Q+ + T Q G+A +SLIN+VL+ +
Sbjct: 284 KSSFLAMITHELRTPMNGVIGMASLLLETPLTEEQRSFTNTIQQCGEAQLSLINDVLECS 343
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+GKLELE + F LR ++DVLS F+ ++Q KG+E+ + VP L GDPGR RQ+
Sbjct: 344 KIEAGKLELEHLDFYLRTTVEDVLSQFAERAQRKGLEITGLVHAAVPNALRGDPGRLRQV 403
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+TN +GN+IKFTE+G + + +L + + ++ E++ S
Sbjct: 404 LTNFVGNAIKFTERGEVTLQAFLERDSPSEVIIKFEVTDS-------------------- 443
Query: 617 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
G GI + QSR+F F Q S +R +GGTG+
Sbjct: 444 ----------------------------GIGISEDVQSRLFQAFTQADSSTTRKYGGTGL 475
Query: 677 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS-E 735
GL+ISK LV M G++G S P G+TF TA F +Q P V S E
Sbjct: 476 GLAISKQLVELMGGQVGLRSQPGQGTTFWCTARF-----------QKQAVCAPAIVPSVE 524
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGI---QVEVVSDQLQCLSQIASGSKIINMILVEQ 792
G + L+VD + + + G+ Q + + L Q A+ + + +++
Sbjct: 525 LSGRRILIVDDNESNRTILHHLVSGWGMQDGQARHADEAILMLEQAAAQGRPYDAAVLDM 584
Query: 793 EVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS 852
+ KD +R G +L +L + I A + + + KP+R
Sbjct: 585 LMPGKD---GLQLAQEIRAHPQGAGVRLIVLTSLIQPGHAERARR-AGFTAYLTKPVRHD 640
Query: 853 MLAASLQ-----------RAMGVGNKGNIRNWELPSMSLRHLLLGR----KILIVDDNNV 897
L L+ A GV I +P++ RH L + +IL+ +DN V
Sbjct: 641 QLQGCLRVVFGLQGPATTNAPGVATGPTI----VPTLITRHTLAEQRARPRILVAEDNVV 696
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
N K+A L R G V G++A + A MD QMP MDGYE
Sbjct: 697 NQKLAVRMLDRLGYQPDIVSNGQEAVAAFE-RGLYAAIVMDCQMPTMDGYE 746
>gi|77359688|ref|YP_339263.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas
haloplanktis TAC125]
gi|76874599|emb|CAI85820.1| sensor protein barA [Pseudoalteromonas haloplanktis TAC125]
Length = 918
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 163/526 (30%), Positives = 251/526 (47%), Gaps = 82/526 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A+ KS FLA +SHE+RTP+NGV+G L T L+ Q+DY+ T + S +L+
Sbjct: 280 KKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLHKTPLNKNQKDYLDTIELSANSLM 339
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++I+++LD +K+E+G +ELE++ F LR +++V++L + + DK +EL++YIS +VP+ L
Sbjct: 340 TIISDILDFSKLEAGAMELESIQFQLRDTVNEVMTLLAPSAHDKQLELSIYISPQVPDHL 399
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R +Q++ NL+ N+IKFTEKG I V + ++D
Sbjct: 400 TGDPTRLKQVLINLLSNAIKFTEKGAIKVDIS--HRLLD--------------------- 436
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D TS ++VSV DTG GIP++ Q +FT F Q S
Sbjct: 437 --------------DERTS-----------ILVSVADTGVGIPVDKQDALFTAFGQADSS 471
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R GGTG+GL I+K++V M G+I S P G+ FTF VF
Sbjct: 472 ITRKFGGTGLGLIITKHIVEAMSGKITLNSAPGNGTCFTFNGVF---------------- 515
Query: 727 NQPNSV------SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 780
PN V + G L ++P + I V + L+ I +
Sbjct: 516 RLPNHVFASDLPTKSLLGKHVLYLEPHEHTHHAVLSLLNEWQISVTGCFSDAEFLAAIDN 575
Query: 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
+ ++ ++ D V +R+ L+L+ N++S S G
Sbjct: 576 KEQQYDICIIGDMASVNDMQRLKAHVKAVRE----STDYLYLMLNTVSHSMREAFI-GSG 630
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
+ + KPL L L + + + N E + LL K+L+VDDN+ NLK
Sbjct: 631 ADACLSKPLNHRKLCELLAAPYRLDHP--VHNIEQNEQT----LLPLKVLVVDDNDANLK 684
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+ L + G +A L H++D FMDIQMP MDG
Sbjct: 685 LIYTLLNEQVELIDTAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDG 729
>gi|359445977|ref|ZP_09235687.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. BSi20439]
gi|358040175|dbj|GAA71936.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. BSi20439]
Length = 941
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 165/523 (31%), Positives = 250/523 (47%), Gaps = 76/523 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A+ KS FLA +SHE+RTP+NGV+G L T L+ Q+DY+ T + S +L+
Sbjct: 297 KKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKTPLNKNQKDYLDTIELSANSLL 356
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++I+++LD +K+E+G +ELE++ F LR +++V++L + + DK +EL++YI+ +VP+ L
Sbjct: 357 TIISDILDFSKLEAGAMELESIQFQLRDSVNEVMTLLAPSAHDKQLELSIYINPQVPDHL 416
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTV--YLVEEVVDSIEVETELSSSKNTLSGYP 604
GDP RF+Q++ NL+ N+IKFTEKG I V + L++E SI V
Sbjct: 417 TGDPTRFKQVLINLLSNAIKFTEKGAIKVDISHRLLDEERTSILVS-------------- 462
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
VAD TG GIP + Q +FT F Q
Sbjct: 463 VAD------------------------------------TGVGIPADKQDALFTAFGQAD 486
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
SI+R GGTG+GL I+K++V M G I S P G+ FTF VF N
Sbjct: 487 SSITRKFGGTGLGLIITKHIVEAMNGRITLNSAPGSGTCFTFNGVF-------RLPNHVF 539
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 784
+N+ P + G + L ++P +Q I V + + L I
Sbjct: 540 INDLP---TQSLIGKRVLYLEPHKHTHHAVLSLLQEWKISVTPCHSESEFLECIEKSEIN 596
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
++ L+ D +V +R+ L+L+ N++S + G +
Sbjct: 597 FDICLIGHMASVDDMQRLKSYVKAVRE----STDYLYLMLNTVSHNMREAFI-GSGADAC 651
Query: 845 IMKPLRSSMLAASLQRAMGVGNKG-NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
+ KPL L L + + NI E LL K+L+VDDN+ NLK+
Sbjct: 652 LSKPLNHRKLCELLAAPYRLDHPAHNIDRHE-------QTLLPLKVLVVDDNDANLKLIY 704
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
L + G +A L H++D FMDIQMP MDG
Sbjct: 705 TLLNEQVELIDTAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDG 746
>gi|121728768|ref|ZP_01681782.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae V52]
gi|121628945|gb|EAX61398.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae V52]
Length = 1113
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 258/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 374 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 433
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 434 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 493
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 494 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 542
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 543 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 565
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 566 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 623
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 624 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 673
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 674 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 728
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R +G+ +L+V+DN
Sbjct: 729 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFVGQSLLLVEDN 782
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 783 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 832
>gi|359437632|ref|ZP_09227689.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. BSi20311]
gi|358027674|dbj|GAA63938.1| two-component system, NarL family, sensor histidine kinase BarA
[Pseudoalteromonas sp. BSi20311]
Length = 941
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 165/523 (31%), Positives = 250/523 (47%), Gaps = 76/523 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A+ KS FLA +SHE+RTP+NGV+G L T L+ Q+DY+ T + S +L+
Sbjct: 297 KKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKTPLNKNQKDYLDTIELSANSLL 356
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++I+++LD +K+E+G +ELE++ F LR +++V++L + + DK +EL++YI+ +VP+ L
Sbjct: 357 TIISDILDFSKLEAGAMELESIQFQLRDSVNEVMTLLAPSAHDKQLELSIYINPQVPDHL 416
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTV--YLVEEVVDSIEVETELSSSKNTLSGYP 604
GDP RF+Q++ NL+ N+IKFTEKG I V + L++E SI V
Sbjct: 417 TGDPTRFKQVLINLLSNAIKFTEKGAIKVDISHRLLDEERTSILVS-------------- 462
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
VAD TG GIP + Q +FT F Q
Sbjct: 463 VAD------------------------------------TGVGIPADKQDALFTAFGQAD 486
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
SI+R GGTG+GL I+K++V M G I S P G+ FTF VF N
Sbjct: 487 SSITRKFGGTGLGLIITKHIVEAMNGRITLNSAPGSGTCFTFNGVF-------RLPNHVF 539
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 784
+N+ P + G + L ++P +Q I V + + L I
Sbjct: 540 INDLP---TQSLIGKRVLYLEPHKHTHHAVVSLLQEWKISVTPCHSESEFLECIEKSEIN 596
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
++ L+ D +V +R+ L+L+ N++S + G +
Sbjct: 597 FDICLIGHMASVDDMQRLKSYVKAVRE----STDYLYLMLNTVSHNMREAFI-GSGADAC 651
Query: 845 IMKPLRSSMLAASLQRAMGVGNKG-NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
+ KPL L L + + NI E LL K+L+VDDN+ NLK+
Sbjct: 652 LSKPLNHRKLCELLAAPYRLDHPAHNIDQHE-------QTLLPLKVLVVDDNDANLKLIY 704
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
L + G +A L H++D FMDIQMP MDG
Sbjct: 705 TLLNEQVELIDTAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDG 746
>gi|302879489|ref|YP_003848053.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302582278|gb|ADL56289.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 1179
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 182/630 (28%), Positives = 295/630 (46%), Gaps = 103/630 (16%)
Query: 334 NVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCR-FKQKAPWPLLAISTS 392
N++D+ ++ P G+ V+ D P R+ M + + +A + T
Sbjct: 462 NLHDLLHVHRP---DGTRVTADEC----------PIRQSTMNKKVYHSEAEYFQHKNGTL 508
Query: 393 IGILVIAS--LVGHIFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHE 447
I ++AS + G + +V + E EL K+ AEAA AK FLAT+SHE
Sbjct: 509 FPIAIVASPMIDGDLITGSVAAFQDISERKFTERELLRAKESAEAASRAKGDFLATMSHE 568
Query: 448 IRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEA 507
IRTPMNG++GM ++ +DTE+ Q++Y+ ++S AL+++IN++LD +K+ESGK+ELE+
Sbjct: 569 IRTPMNGIIGMTELALDTEMSAEQREYLNMVKSSADALLTIINDILDFSKIESGKMELES 628
Query: 508 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKF 567
V F++R + + ++ KG+EL + +P+ L+GDPGR RQ++TNL+GN+IKF
Sbjct: 629 VEFDVRNLFASAEKTLAIRAAQKGLELVYDVDGAIPDLLVGDPGRLRQVLTNLLGNAIKF 688
Query: 568 TEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPF 627
+E G I + + L+ + D + V E++ G PV H
Sbjct: 689 SEHGAITLRMKLLMQTSDGLCVRIEVADQG---IGIPVDKLAH----------------- 728
Query: 628 KSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGR 687
IF F Q S +R +GGTG+GL+IS LV
Sbjct: 729 ----------------------------IFEAFTQADTSTTRKYGGTGLGLAISSKLVAA 760
Query: 688 MKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE-FQGMKALVVDP 746
M G++ S IGS F FT NQP+ +S E + AL+VD
Sbjct: 761 MGGDLSVESQVGIGSVFGFTTTLPVAL------------NQPSEISCESLVNLSALIVDD 808
Query: 747 RPIRAKVSRYHIQRLGIQVEV---VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVST 803
K+ I++ G++ V S+ + L + +++L++ + + D
Sbjct: 809 NATNCKLLSQQIKKWGMRPTVAGSASEGMAMLREAQQEQAPFDLLLLDAVLSDAD---GF 865
Query: 804 LFVNNLRKLGCGFQSKLFLLANSISSSRANTS-TDGVSIPSVIMKPLRSSMLAASLQRAM 862
F L+ + ++ + +L S +S RA+ I + + KP+ L +++ A+
Sbjct: 866 DFAAQLQSMPQKPRALVMML--SSASLRADAERCRQAGISNYLSKPIDRWELIKTIKAAL 923
Query: 863 GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA 922
G+ ++ P S L IL+ +DN VN K+A L ++G VV G +A
Sbjct: 924 GL-QVDDVFVQTAPLASAHSL----NILLAEDNRVNQKLAITLLGKWGHRVVLANNGIEA 978
Query: 923 TELLMPPH----QFDACFMDIQMPEMDGYE 948
E H FD MD+QMPEM G E
Sbjct: 979 VE-----HAGRVDFDVILMDLQMPEMSGME 1003
>gi|56414910|ref|YP_151985.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|168242719|ref|ZP_02667651.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194451603|ref|YP_002046927.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197363838|ref|YP_002143475.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|386592651|ref|YP_006089051.1| BarA sensory histidine kinase (VarS, GacS) [Salmonella enterica
subsp. enterica serovar Heidelberg str. B182]
gi|419732031|ref|ZP_14258939.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419735655|ref|ZP_14262528.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419736957|ref|ZP_14263781.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419741819|ref|ZP_14268497.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419750490|ref|ZP_14276947.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|421573241|ref|ZP_16018881.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421580314|ref|ZP_16025872.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421583158|ref|ZP_16028682.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|56129167|gb|AAV78673.1| sensor protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|194409907|gb|ACF70126.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|197095315|emb|CAR60872.1| sensor protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|205338112|gb|EDZ24876.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|381290662|gb|EIC31926.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381293979|gb|EIC35119.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381306415|gb|EIC47289.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|381306996|gb|EIC47862.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381315186|gb|EIC55949.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|383799692|gb|AFH46774.1| BarA sensory histidine kinase (VarS, GacS) [Salmonella enterica
subsp. enterica serovar Heidelberg str. B182]
gi|402520070|gb|EJW27424.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402528726|gb|EJW35976.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402532084|gb|EJW39281.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
Length = 918
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 167/525 (31%), Positives = 258/525 (49%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + LVE+ LS++K
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDI---LVEK--------RALSNTK--------- 442
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ + V + DTG GIP QSR+F F Q S
Sbjct: 443 ----------------------------VQIEVQIRDTGIGIPERDQSRLFQAFRQADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN + ++ G + ++P A+ + + ++V + S L
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYIEPNATAAQCTLDLLSDTPVEV-IYSPTFSALPLAHYD 578
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
I+++ + +E L + + R + LLA +
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + + + +++ ++ VDDN NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMDIQMPDMDG 726
>gi|254225353|ref|ZP_04918965.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae V51]
gi|125622194|gb|EAZ50516.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae V51]
Length = 1331
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 258/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 761 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 842 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 892 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R +G+ +L+V+DN
Sbjct: 947 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFVGQSLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-DHADFDLVLMDMQMPVMDG 1050
>gi|254286552|ref|ZP_04961508.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae AM-19226]
gi|150423310|gb|EDN15255.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae AM-19226]
Length = 1331
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 257/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 761 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 842 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 892 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R G+ +L+V+DN
Sbjct: 947 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 1050
>gi|119486144|ref|ZP_01620204.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
gi|119456635|gb|EAW37764.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
Length = 1410
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 181/582 (31%), Positives = 276/582 (47%), Gaps = 107/582 (18%)
Query: 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 480
+ +++ +A AA AKS+FLAT+SHEIRTPMN V+GM +L+DT L TQQDYV T ++
Sbjct: 659 QDLAKVRDEALAATKAKSEFLATMSHEIRTPMNAVIGMTGLLLDTRLTSTQQDYVETIRS 718
Query: 481 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 540
S AL+SLIN++LD +K+ESGKLELE F+LR +++ L L + K+ K +ELA I
Sbjct: 719 SSDALLSLINDILDFSKIESGKLELEQHPFDLRTCIEESLDLLATKAVSKNIELAYLIDP 778
Query: 541 RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 600
P +IGD R RQI+ NL+ N++KFTE G + +++ V S+E
Sbjct: 779 ITPSKVIGDGARLRQILVNLLSNAVKFTETGEVVISLKAV-----SLE------------ 821
Query: 601 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660
P+ S + + + +T P + + +V DTG GIP +R+F F
Sbjct: 822 ---PIV----SEENLDENSTETTTQPNR------YQIQFAVRDTGIGIPPARMNRLFKSF 868
Query: 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEI--------------GFVS---------- 696
QV S SR +GGTG+GL ISK L M G++ F+
Sbjct: 869 SQVDSSTSRQYGGTGLGLVISKRLAEMMGGQMWVESHKTIAGEPPTDFIPSMTNSTGNRP 928
Query: 697 -----------------IPN--IGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 737
IPN +GSTF FT + + S H ++ P E
Sbjct: 929 LLDPVKIDQVSQTSKSFIPNKAVGSTFYFTIIVESCS-----HLKKEWGKTP-----ELT 978
Query: 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEK 797
+ L+VD +V Q G+ + ++ ++ L+ + G +M L+E ++ +
Sbjct: 979 EKRLLIVDNNATNRQVLTLQTQAWGMLAKTAANGVEALNILRQGEP-FDMALLEMQMPDF 1037
Query: 798 DTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI---PSVIMKPLRSSML 854
D +RKL + L LL +S S D + + + KP++ S L
Sbjct: 1038 D---GLSLAKEIRKLSPYKRVPLVLL-----TSMGRQSIDRAQLYDFSACLNKPIKQSQL 1089
Query: 855 AASLQRAMG-------VGNKGNIR-NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 906
L +G + +K ++ ++P ++ L +IL+ +D+ VN KVA L
Sbjct: 1090 YNVLMNILGGESLEVHLADKDRVKLTKDIPLLAKT---LPLRILLAEDHLVNQKVALQIL 1146
Query: 907 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+R G G + E L +D MD+QMPEMDG E
Sbjct: 1147 QRMGYRADVAGNGLEVLEALR-RQTYDVILMDMQMPEMDGLE 1187
Score = 40.0 bits (92), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
L +++LIVD+N N +V + +G G +A +L FD +++QMP+
Sbjct: 977 LTEKRLLIVDNNATNRQVLTLQTQAWGMLAKTAANGVEALNILRQGEPFDMALLEMQMPD 1036
Query: 944 MDGYEM 949
DG +
Sbjct: 1037 FDGLSL 1042
>gi|94264445|ref|ZP_01288234.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93455135|gb|EAT05357.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 1009
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 175/578 (30%), Positives = 278/578 (48%), Gaps = 86/578 (14%)
Query: 381 KAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYH-GMMELKKKAEAADVAKSQ 439
K P+PL + G + + +++ A + K +ED E+ + A+AA++AKS+
Sbjct: 303 KPPYPLATVLAVGGAVFLITMLFSSLAALLFSWRKWQEDARLKAEEMARDAQAANLAKSE 362
Query: 440 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVE 499
FLA +SHEIRTP+NGV+GM +L++TEL+ Q+ Y T SG++L+SLIN++LD +K+E
Sbjct: 363 FLANMSHEIRTPLNGVIGMTGLLLETELNSQQRRYAETMLYSGESLLSLINDILDLSKIE 422
Query: 500 SGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITN 559
+ +LELE + F+L +DD + + ++ ++G+EL S + + GD GR RQ++ N
Sbjct: 423 ARQLELEEIEFDLAGTIDDFAATMAVRAHERGLELICLFSPGLSPLVKGDCGRLRQVLAN 482
Query: 560 LMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 619
L+GNSIKFTEKG + + V
Sbjct: 483 LVGNSIKFTEKGEVAIKV------------------------------------------ 500
Query: 620 QDGSTSPFKSSSADLINLIVSVE--DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 677
S D N+++S E DTG GIP E + IF F QV S +R +GGTG+G
Sbjct: 501 --------SSRDKDEENVLLSFEISDTGVGIPQEKLTTIFEKFSQVDASTTRKYGGTGLG 552
Query: 678 LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 737
L+I++ LV M GEI S GS F+FT +F + P ++ E Q
Sbjct: 553 LAITRQLVDLMGGEITVSSREGSGSVFSFTVLF-----------RKVAGEIPTTM--ELQ 599
Query: 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKIINMILVEQEV 794
+ LVVD +V ++ ++ + D LQ L Q +G M L++ ++
Sbjct: 600 DVPVLVVDDNATNREVLESYLNSWKMRPTMAEDGATALQKLQQAVAGDSPFAMALLDMQM 659
Query: 795 WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML 854
D + + K + +L S+ S + + + + KPLR
Sbjct: 660 PGMD----GMALARAIKEDSALSATPLILLTSLGSGDGDQAERRHLFAACLNKPLRQR-- 713
Query: 855 AASLQRAMGVGNKGN-IRNWELPSMSLRHLLLGRK---ILIVDDNNVNLKVAAAGLKRYG 910
L+ + + + G + E PS + L K IL+V+DN +N +VA A + + G
Sbjct: 714 --ELRHVISMISSGKAVEKAEKPSFGEMLVSLDGKQPRILLVEDNIINQQVAKAVMAKIG 771
Query: 911 AAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
+ G++A + L +P +D MDIQMP MDG
Sbjct: 772 INIHVAANGQEALDALGSIP---YDLVVMDIQMPVMDG 806
>gi|192288750|ref|YP_001989355.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
palustris TIE-1]
gi|192282499|gb|ACE98879.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
palustris TIE-1]
Length = 636
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 162/534 (30%), Positives = 263/534 (49%), Gaps = 84/534 (15%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
++ ++ A+AA+ AKS+ LA SHEIRTP+NG++GM +L+DT L Q Y + + SG
Sbjct: 109 LIAARESADAANHAKSRLLAMASHEIRTPLNGIIGMSRLLLDTPLSAEQATYAKAVKTSG 168
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
+AL++L +E+LD A++E+GK+EL+ F L ++++D++ L + ++Q +G+E+A I +R+
Sbjct: 169 EALLALTDELLDYARIEAGKIELDCRPFVLSSLIEDIIELLAPRAQARGLEIAADIDERL 228
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P +LIGD R RQ++ NL GN+IKFTE G + + V
Sbjct: 229 PVSLIGDAARLRQVLLNLCGNAIKFTETGGVALIV------------------------- 263
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
+R G + + V DTG GI +AQ+RIF F Q
Sbjct: 264 ----ERGDQSDGLR----------------------IIVRDTGIGIAPDAQARIFHEFEQ 297
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
I+R GGTG+GLSIS +V M G I S P GSTFT T ++ +H+
Sbjct: 298 ADAGIARNFGGTGLGLSISDRIVSVMGGRIALESKPGEGSTFTITLPL-----SAADHDR 352
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
P + G ++V P + A ++ ++R G + + D ++++ S
Sbjct: 353 ATAAFAP----PDLHGSSVMIVSPHGVEASLAARRLERWGAETCLCDDLAAAIARLPERS 408
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD-GVSI 841
+ +L++ + DT + TL L + +L +L ++R D +
Sbjct: 409 --WHAVLIDH-AFGTDT-IETLARKALPR----ATHRLVML---TPAARHELLPDLPAAF 457
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP-----SMSLRHLLLGRKILIVDDNN 896
++KPLR++ LAA L A+ V +I + + P S ++ H IL+ +DN+
Sbjct: 458 TGYLVKPLRAASLAARLGTAVEVAAP-SIADGDPPPVQDASSAITHEAFA--ILVAEDND 514
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ----FDACFMDIQMPEMDG 946
+N + A L R G V G++A E FD MD+QMP +DG
Sbjct: 515 INALLIRALLHRLGHHAEIVGDGRRAVEAWGAADNTGTPFDLVLMDVQMPILDG 568
>gi|147674561|ref|YP_001216911.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O395]
gi|227117816|ref|YP_002819712.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O395]
gi|262169340|ref|ZP_06037032.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27]
gi|146316444|gb|ABQ20983.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O395]
gi|227013266|gb|ACP09476.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O395]
gi|262022153|gb|EEY40862.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27]
Length = 1331
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 258/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 761 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 842 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 892 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R +G+ +L+V+DN
Sbjct: 947 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFVGQSLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 1050
>gi|126741123|ref|ZP_01756804.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
gi|126717760|gb|EBA14481.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
Length = 762
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 160/538 (29%), Positives = 261/538 (48%), Gaps = 69/538 (12%)
Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
A+ E H + E K A+ A+ AKS+FLA +SHEIRTPMNGV+GM ++++DTELD QQ
Sbjct: 217 AERNEREHALQEACKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILDTELDEDQQM 276
Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
Y T SG AL+++IN++L+ +K+E+GK+EL+ FNL+ ++DV++L S ++ KGVE
Sbjct: 277 YAETISKSGSALLTIINDILNFSKIEAGKVELDNAPFNLQVAIEDVVTLLSPRATMKGVE 336
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
+ + + +PE GD GR RQ++TN++GN+IKFT G++ + V
Sbjct: 337 ITLRYAPDLPEFFTGDVGRVRQVVTNIVGNAIKFTSTGYVAIDV---------------- 380
Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
S +K KG++ L + V DTG GIP E
Sbjct: 381 SGAKGP-------------KGYQ--------------------LGIEVLDTGIGIPEERL 407
Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
IF+ F QV + +R+ GTG+GL+IS L+ M G + S+ GS FT
Sbjct: 408 DDIFSAFEQVDSAATRSFEGTGLGLAISSRLLSLMGGRVTVKSVAGKGSVFTIRLPLTEC 467
Query: 714 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI---QVEVVSD 770
+ + +F+G+ L+VD + + + G+ Q E +
Sbjct: 468 DAVPSVQEG----------DFDFKGLTCLIVDDLELNRSILSERLTSWGVQCFQAESANR 517
Query: 771 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
L+ L+ + ++ +++ ++ D ++ + + F ++ +S+ +
Sbjct: 518 ALELLADLRLEKCHLDFAILDYQMPVTDGRELAKCIHKIPE----FAQVPIVMLSSVEQA 573
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
A + + +I + +KPLR+S L + R + VG +I + LP +K+L
Sbjct: 574 MARSVREVENICEIALKPLRASHLRQVINRVLNVGELPSIPS--LPKSEPEVKTQYKKLL 631
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
I +DN N V LK + G +A EL + D MD+ MP MDG E
Sbjct: 632 IAEDNRTNQLVVTRMLKNDNYEITIAGNGAEAVELF-KKDRPDLILMDMMMPVMDGVE 688
>gi|116624414|ref|YP_826570.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
gi|116227576|gb|ABJ86285.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
Length = 1349
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 182/591 (30%), Positives = 291/591 (49%), Gaps = 92/591 (15%)
Query: 378 FKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHG--MMEL---KKKAEA 432
F PWP +G L + S VG + +A ++ G ++EL K++AEA
Sbjct: 724 FAFAVPWPWF---RQLGFLALLS-VGSCAIIVLACVAAIQYRRRGSLILELNRAKEQAEA 779
Query: 433 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEV 492
A K++FLA +SHEIRTPMNGV+GM +L+DTEL Q+DY T + SG++L++LIN++
Sbjct: 780 ASRHKTEFLANMSHEIRTPMNGVIGMTGLLLDTELTTEQRDYAGTVRRSGESLLTLINDI 839
Query: 493 LDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGR 552
LD +KVE+GKL +EA +F+LR+ +++V + + K +++ ++L + P +GD GR
Sbjct: 840 LDFSKVEAGKLAIEASAFDLRSTIEEVDEMLAPKIENRKLDLVLQYPVGAPRHFVGDAGR 899
Query: 553 FRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSW 612
RQ++TNL+GN+IKFT +G I + EVV C S
Sbjct: 900 IRQVVTNLVGNAIKFTGEGSIVI------EVV------------------------CES- 928
Query: 613 KGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672
QD + + + V++ DTG GIP E +F F Q+ S +R +G
Sbjct: 929 -------QDEARAVMR----------VAIHDTGPGIPSEKIGSLFEKFSQLDGSTTRKYG 971
Query: 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSV 732
GTG+GL+ISK LV M G + S GSTF+FT +++ E +
Sbjct: 972 GTGLGLAISKQLVSLMGGSMAVSSRLGEGSTFSFTLPLPLDANSPVEPLT---------- 1021
Query: 733 SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSDQLQCLSQIASGSKIINMIL 789
++ +G++AL+VD I +V I G++ + L L + + +
Sbjct: 1022 AAGLRGLRALIVDDNEINRRVLHEQIIGWGMRNGSFAAGEEALVALRAAHAAGDPYHFAI 1081
Query: 790 VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS-SRANTSTDGVSIPSVIMKP 848
++ + + + V K + + +L S+ S A G+ + + ++KP
Sbjct: 1082 LDYRM----PGMDGVEVARAIKADDELRETVVVLLTSVGQWSEARQKESGI-VDASLVKP 1136
Query: 849 LRSS----MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR------KILIVDDNNVN 898
+R S +L++ R + +R E P +R L R ++L+ +DN VN
Sbjct: 1137 VRQSQLLNILSSCWVRTNSITAAPAVRP-EPPVNEMRAALALRFGGVPVRVLVAEDNVVN 1195
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATEL--LMPPHQFDACFMDIQMPEMDGY 947
KV+A L + G G++A L L+P +D FMD QMPEMDGY
Sbjct: 1196 QKVSARMLDKLGIRADVAADGREAVALFGLVP---YDLIFMDCQMPEMDGY 1243
>gi|429887218|ref|ZP_19368743.1| CheY-like receiver [Vibrio cholerae PS15]
gi|429225870|gb|EKY32068.1| CheY-like receiver [Vibrio cholerae PS15]
Length = 1331
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 258/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD+TQ+ YV S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDMTQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 761 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 842 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 892 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R G+ +L+V+DN
Sbjct: 947 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 1050
>gi|375104871|ref|ZP_09751132.1| signal transduction histidine kinase [Burkholderiales bacterium
JOSHI_001]
gi|374665602|gb|EHR70387.1| signal transduction histidine kinase [Burkholderiales bacterium
JOSHI_001]
Length = 812
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 167/552 (30%), Positives = 253/552 (45%), Gaps = 82/552 (14%)
Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
A VE + K AE A AKS FLA +SHEIRTPMNGVLGMLD+L DT L Q+
Sbjct: 259 ATVERRTQELRLAKDAAEDASRAKSAFLANMSHEIRTPMNGVLGMLDLLRDTRLSERQRH 318
Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
+ TA +SG+AL++++N++LD +K+E+G++ LE F L ++DD L LF+ +Q KGVE
Sbjct: 319 FADTAHSSGEALLAILNDILDFSKIEAGRMALEHAPFELAPLVDDALGLFARDAQAKGVE 378
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
L + +PE L+GDP R RQI+TNL+ N++KFT +G + V L
Sbjct: 379 LLAQVDAALPEHLLGDPLRLRQILTNLLSNAVKFTARGEVIVQARL-------------- 424
Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
+ G P W L ++V D+G G+
Sbjct: 425 ---DSGTDGAP-------W------------------------LALAVRDSGVGMDAPTL 450
Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
+R+F F Q S +R +GGTG+GL+I + L M GE+ S P GSTFT
Sbjct: 451 ARVFDAFSQADVSTTRRYGGTGLGLTICRRLASLMGGELVATSTPGAGSTFTLRLPLAEA 510
Query: 714 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
S +P + + G+KALVVD ++ + +Q +G+ L+
Sbjct: 511 PDGS---------ARPAAPAGMPPGLKALVVDDNATGREILLHQLQGMGLAAHSAHGGLE 561
Query: 774 CLSQ----IASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 829
L+Q + G ++L ++ +V + R F + S+
Sbjct: 562 ALAQLNGAVREGRPYELLVLDDRMPGMTGRAVVRALRGDAR-----FADLPIAMLTSVDD 616
Query: 830 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL--PSM--SLRHLLL 885
R + + ++ + + KP+R L +L R + G R L PS+ L
Sbjct: 617 RR-DDALGPDAVQAWLTKPVRRKTLHETLLR-LAAGGAAPSRPAPLGEPSVLGGLDDAPR 674
Query: 886 GR---------KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACF 936
R ++L+ +D+ VN VA L+ G V G++A FD
Sbjct: 675 ARDGGPSATRPRVLLAEDHPVNQLVAQTRLRELGCDTVLATNGREAVARWR-EGGFDLVL 733
Query: 937 MDIQMPEMDGYE 948
MD MPE+DG++
Sbjct: 734 MDCHMPELDGFD 745
>gi|229523546|ref|ZP_04412951.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426]
gi|229337127|gb|EEO02144.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426]
Length = 1342
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 257/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 603 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 662
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 663 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 722
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 723 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 771
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 772 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 794
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 795 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 852
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 853 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 902
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 903 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 957
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R G+ +L+V+DN
Sbjct: 958 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1011
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 1012 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 1061
>gi|229515723|ref|ZP_04405182.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21]
gi|229347492|gb|EEO12452.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21]
Length = 1331
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 257/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 761 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 842 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 892 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R G+ +L+V+DN
Sbjct: 947 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 1050
>gi|421572828|ref|ZP_16018473.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402514904|gb|EJW22319.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
Length = 736
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 167/525 (31%), Positives = 258/525 (49%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 101 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 160
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 161 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 220
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + LVE+ LS++K
Sbjct: 221 IGDPLRLQQVITNLVGNAIKFTESGNIDI---LVEK--------RALSNTK--------- 260
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ + V + DTG GIP QSR+F F Q S
Sbjct: 261 ----------------------------VQIEVQIRDTGIGIPERDQSRLFQAFRQADAS 292
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 293 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 339
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN + ++ G + ++P A+ + + ++V + S L
Sbjct: 340 --PNVIIDGPSTACLAGKRLAYIEPNATAAQCTLDLLSDTPVEV-IYSPTFSALPLAHYD 396
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
I+++ + +E L + + R + LLA +
Sbjct: 397 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 447
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + + + +++ ++ VDDN NLK+
Sbjct: 448 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 500
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 501 IGALLEDKVQHVELCDSGHQAVDR-AKQMQFDLILMDIQMPDMDG 544
>gi|153213464|ref|ZP_01948775.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae 1587]
gi|124115928|gb|EAY34748.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae 1587]
Length = 1331
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 257/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 761 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 842 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 892 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R G+ +L+V+DN
Sbjct: 947 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNEAYHNS--RPNFAGQSLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 1050
>gi|392553976|ref|ZP_10301113.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas undina
NCIMB 2128]
Length = 945
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 165/523 (31%), Positives = 250/523 (47%), Gaps = 76/523 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A+ KS FLA +SHE+RTP+NGV+G L T L+ Q+DY+ T + S +L+
Sbjct: 297 KKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKTPLNKNQKDYLDTIELSANSLL 356
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++I+++LD +K+E+G +ELE++ F LR +++V++L + + DK +EL++YI+ +VP+ L
Sbjct: 357 TIISDILDFSKLEAGAMELESIQFQLRDSVNEVMTLLAPSAHDKQLELSIYINPQVPDHL 416
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTV--YLVEEVVDSIEVETELSSSKNTLSGYP 604
GDP RF+Q++ NL+ N+IKFTEKG I V + L++E SI V
Sbjct: 417 TGDPTRFKQVLINLLSNAIKFTEKGAIKVDISHRLLDEERTSILVS-------------- 462
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
VAD TG GIP + Q +FT F Q
Sbjct: 463 VAD------------------------------------TGVGIPADKQDALFTAFGQAD 486
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
SI+R GGTG+GL I+K++V M G I S P G+ FTF VF N
Sbjct: 487 SSITRKFGGTGLGLIITKHIVEAMNGRITLNSAPGSGTCFTFNGVF-------RLPNHVF 539
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 784
+N+ P + G + L ++P +Q I V + + L I
Sbjct: 540 INDLP---TQSLIGKRVLYLEPHKHTHHAVVSLLQEWKISVTRCHSESEFLECIEKSEIN 596
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
++ L+ D +V +R+ L+L+ N++S + G +
Sbjct: 597 FDICLIGHMASVDDMQRLKSYVKAVRE----STDYLYLMLNTVSHNMREAFI-GSGADAC 651
Query: 845 IMKPLRSSMLAASLQRAMGVGNKG-NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
+ KPL L L + + NI E LL K+L+VDDN+ NLK+
Sbjct: 652 LSKPLNHRKLCELLAAPYRLDHPAHNIDQHE-------QTLLPLKVLVVDDNDANLKLIY 704
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
L + G +A L H++D FMDIQMP MDG
Sbjct: 705 TLLNEQVELIDTAHNGSQAYS-LSKSHKYDVIFMDIQMPIMDG 746
>gi|297578936|ref|ZP_06940864.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae RC385]
gi|297536530|gb|EFH75363.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae RC385]
Length = 1331
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 257/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVSRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 761 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 842 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 892 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R G+ +L+V+DN
Sbjct: 947 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 1050
>gi|424591352|ref|ZP_18030781.1| sensory box protein [Vibrio cholerae CP1037(10)]
gi|408031892|gb|EKG68493.1| sensory box protein [Vibrio cholerae CP1037(10)]
Length = 1331
Score = 226 bits (575), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 257/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 761 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 842 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 892 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R G+ +L+V+DN
Sbjct: 947 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 1050
>gi|406998814|gb|EKE16674.1| hypothetical protein ACD_10C00859G0003 [uncultured bacterium]
Length = 996
Score = 225 bits (574), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 169/553 (30%), Positives = 270/553 (48%), Gaps = 72/553 (13%)
Query: 398 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
+A+L+G I T + A+VE +++ + AEAA AKS FLA +SHEIRTPMNGV+G
Sbjct: 331 VAALLGTIIDITARKQAEVE-----ILQARDVAEAASQAKSDFLANMSHEIRTPMNGVIG 385
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
M ++ +DT L Q++Y+ ++S ++L+++IN++LD +K+E+GKL++E +SF+L ++
Sbjct: 386 MTELALDTALTEEQREYLDIVKSSAESLLAIINDILDFSKIEAGKLQVEEISFDLHRVIA 445
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
D L + ++ +K +EL + +VP + GDP R RQ++ NL+GN+IKFTE+G I +
Sbjct: 446 DTLKTLALRAHEKNLELISEVMPKVPCHVFGDPSRIRQVLVNLLGNAIKFTEQGEISLRT 505
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 637
L+ +VVD +++ F
Sbjct: 506 ELI-KVVDG-----------------------NAYIHF---------------------- 519
Query: 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697
+V DTG GI + Q IF F Q S +R GGTG+GLSIS++LV M GEI S
Sbjct: 520 --AVSDTGVGIAPDKQELIFEAFSQEDTSTTRRFGGTGLGLSISRHLVALMGGEIWLESQ 577
Query: 698 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 757
GSTF F+ ++Q + +P + E +G LVVD +V
Sbjct: 578 LGRGSTFHFSLKLAI--------DTQPL--EPITRQIELRGRHILVVDDNATNRRVLSGL 627
Query: 758 IQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817
+ ++ ++ L + + I+++ ++ D LR
Sbjct: 628 LAAWDVKTQLAESGAMALDIMRCAETSFDCIILDAQMPAMD---GYELARQLRAEHPQLP 684
Query: 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR--AMGVGNKGNIRNWEL 875
L L ++++ G I + KP+ S L ++L+R AMG G R+ L
Sbjct: 685 PMLMLSSSAMRGDEQRCQAAG--IDAYFSKPISSEDLLSALRRFFAMG-GQPLATRHTLL 741
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
LR L IL+V+D+ VN K+A L+++G G++A + FD
Sbjct: 742 NRHVLRELQRSLNILLVEDHPVNQKLALGLLEKWGHQATLANNGQEALAIF-SESAFDLI 800
Query: 936 FMDIQMPEMDGYE 948
MD+QMP M G E
Sbjct: 801 LMDMQMPVMGGLE 813
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QFDACFMDIQMP 942
L GR IL+VDDN N +V + L + E G A +++ FD +D QMP
Sbjct: 606 LRGRHILVVDDNATNRRVLSGLLAAWDVKTQLAESGAMALDIMRCAETSFDCIILDAQMP 665
Query: 943 EMDGYEM 949
MDGYE+
Sbjct: 666 AMDGYEL 672
>gi|162449617|ref|YP_001611984.1| hybrid histidine kinase [Sorangium cellulosum So ce56]
gi|161160199|emb|CAN91504.1| Hybrid histidine kinase [Sorangium cellulosum So ce56]
Length = 949
Score = 225 bits (574), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 182/552 (32%), Positives = 267/552 (48%), Gaps = 102/552 (18%)
Query: 416 VEEDYHGMMELKKKAEAADVA---KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 472
VE + EL+ K E A A KS+FLA +SHEIRTPMNG+LG++ ++ + LD +
Sbjct: 291 VEANEQAFEELRVKTEQALEASRMKSEFLANMSHEIRTPMNGILGVIRLMQNQSLDGKMR 350
Query: 473 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 532
YV T AS L+S+IN+VLD +K+E+GK + VSF+LR ++ +V L + ++ +KG+
Sbjct: 351 RYVETVDASANTLMSIINDVLDFSKLEAGKYVAQHVSFDLRLVIQEVAELMASQAHEKGL 410
Query: 533 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592
EL + RVP ++GDP RFRQ++TNL+GN+IKFT++G + +
Sbjct: 411 ELVYRVERRVPTGVVGDPDRFRQVLTNLVGNAIKFTDRGEVLI----------------- 453
Query: 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 652
D STS ++A LI L +V DTG GI +
Sbjct: 454 ----------------------------DASTSQQDKATA-LIKL--AVVDTGPGIAPDD 482
Query: 653 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712
Q ++F F QV S+ R HGGTG+GL+ISK LV M GE+G S P GS F FT G
Sbjct: 483 QKKLFAAFSQVDGSLVRKHGGTGLGLAISKRLVEVMGGEVGLDSTPGQGSRFWFTIRVGV 542
Query: 713 GSSTSNEHNSQQMNNQPNSVSSEF-QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 771
+ +Q+ S+E+ G +ALVV+ V H+ G E
Sbjct: 543 TA------GGEQIR------SAEWASGRRALVVENSRSWRDVVVEHLVAWGFDAE----- 585
Query: 772 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC-----------GFQS-- 818
ASG IN + E V EK + + + LG Q+
Sbjct: 586 -----SAASGRDAINRL--ELAVLEKRPFSAAVVGVQMDDLGLEEFLRTIQSVPALQTLP 638
Query: 819 --KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM-GVGNKGNIRNWEL 875
L+ + +S++ S ++ S+ + + KPLR S L +LQ A+ G +
Sbjct: 639 VVALYHMGSSVTLSGMDS-----SMVTQLPKPLRVSELYNTLQSALTGASTPPPSKPGAE 693
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
P L +L+VDDN +N VA +++ G V G++A E + ++ A
Sbjct: 694 PGKIASKL----PVLVVDDNEINRYVAMEQVEQLGLRVETACNGQEALECV-KRKRYVAV 748
Query: 936 FMDIQMPEMDGY 947
MD QMP MDGY
Sbjct: 749 LMDCQMPVMDGY 760
>gi|262192397|ref|ZP_06050550.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae CT 5369-93]
gi|262031750|gb|EEY50335.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae CT 5369-93]
Length = 1331
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 257/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 761 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 842 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 892 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R G+ +L+V+DN
Sbjct: 947 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 1050
>gi|323495545|ref|ZP_08100619.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio sinaloensis DSM 21326]
gi|323319426|gb|EGA72363.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio sinaloensis DSM 21326]
Length = 1198
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 165/578 (28%), Positives = 277/578 (47%), Gaps = 76/578 (13%)
Query: 386 LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMME--------LKKKAEAADVAK 437
LL + S I ++ G IF T+ + + H +E + +A +A+ AK
Sbjct: 422 LLIVEDSGNITTKMAIGGGIFLITLLLLGLLANKSHAALERFANKLAIARDEANSANRAK 481
Query: 438 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497
S FLA +SHEIRTPMN ++GM + + T+L Q++Y+ + S +L+ LIN++LD +K
Sbjct: 482 SDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQRNYIHKVKLSADSLLGLINDILDFSK 541
Query: 498 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 557
+E+GKL++E V F L +LD++ +L ++ ++G+EL ++I VP L+GDP R Q++
Sbjct: 542 IEAGKLDIEQVDFQLENVLDNISNLVGLRASERGLELLIHIERDVPTALVGDPLRLGQVL 601
Query: 558 TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 617
NL N++KFTE+G I +TV VA+R
Sbjct: 602 INLSNNAVKFTERGEIKITV--------------------------SVAER--------- 626
Query: 618 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 677
S + I L V D+G G+ E ++F+ F Q S +R +GGTG+G
Sbjct: 627 -------------SGENIRLKFRVSDSGIGMTPEQTQKLFSKFTQADSSTTRKYGGTGLG 673
Query: 678 LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 737
L+ISK L M G+I S +GSTF+FT SQ + + V E
Sbjct: 674 LAISKELSQLMGGDIQVESEAGVGSTFSFTI---------QTQISQALKQEQTVVPKEIG 724
Query: 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSKIINMILVEQEV 794
+K L+VD + + L ++ + VS D L L+ AS ++++ +
Sbjct: 725 KLKVLIVDDNASARIILEDILLSLKLECQQVSNADDALTALTTAASDGAPFDLLISD--- 781
Query: 795 WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG--VSIPSVIMKPLRSS 852
W+ + ++++ Q L+ + + + + +P ++ KP+ +S
Sbjct: 782 WQMPGKDGIDLIESMQQAFSSVQQPKVLMLTAYGREELSEALQKRHIELPGLLDKPVTAS 841
Query: 853 MLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNNVNLKVAAAGLKRYG 910
L ++ GV N+ R + L ++ L G ++L+V+DN +N ++A L+
Sbjct: 842 HLFDAIIALYGVENERLSRGEVEEQLQLANVQSLAGAQLLLVEDNEINQELATELLEGQQ 901
Query: 911 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+ E G++A +L +FD MD QMP MDGYE
Sbjct: 902 IHITIAENGQQAVDLYQ-TQEFDGILMDCQMPIMDGYE 938
>gi|229529572|ref|ZP_04418962.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)]
gi|229333346|gb|EEN98832.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)]
Length = 1342
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 257/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 603 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 662
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 663 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 722
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 723 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 771
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 772 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 794
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 795 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 852
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 853 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 902
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 903 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 957
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R G+ +L+V+DN
Sbjct: 958 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1011
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 1012 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 1061
>gi|428310395|ref|YP_007121372.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428252007|gb|AFZ17966.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 1392
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 175/535 (32%), Positives = 269/535 (50%), Gaps = 69/535 (12%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KSQFLA +SHEIRTPMNGVLGM +L+ T L Q +Y T ++S + L+++IN++LD +
Sbjct: 703 KSQFLANMSHEIRTPMNGVLGMAGLLLQTPLTPQQLEYASTIRSSAEHLLTVINDILDFS 762
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+G+++LE++ F L + ++ V+ + + ++ +KG+ELA++IS VP+ L GDP R RQI
Sbjct: 763 KLEAGEMQLESIDFELDSCIESVVDVLAAQAHEKGLELAMWISSDVPKMLKGDPNRLRQI 822
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+ NL+GN++KFT+ G + V V + E +T++S ++ ++ YP F
Sbjct: 823 LLNLVGNAVKFTDVGQVLVKVSVSRER----GTQTDISETQLPITHYP----------FP 868
Query: 617 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
++ L V DTG GI + Q ++F F QV S +R +GGTG+
Sbjct: 869 SY------------------LRFEVTDTGIGISAKDQEKLFQSFSQVDASTTRQYGGTGL 910
Query: 677 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS---QQMNNQPNSVS 733
GL I K LV M GEIG S N GS F FTA F S T E + + VS
Sbjct: 911 GLVICKQLVELMGGEIGVESALNQGSKFWFTASF--DSPTVGEAAACPLVLHKLKLLVVS 968
Query: 734 SEFQGMKALVVD-PRPIRAKVSRYHIQRLG----IQVEVVSDQLQCLS----QIASGS-- 782
++ +AL R IR S L +QV+ D L L+ +A G+
Sbjct: 969 AQTTTRQALCAALHRSIRLNDSAVPAGWLSDSWEMQVDEAVDTLTTLNALRLSVAQGNPY 1028
Query: 783 --KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT--STDG 838
I+++ L + + + V +R Q+KL ++ +S R +T +G
Sbjct: 1029 HLAILDLQLPKPQ--------GAILVPMIRCDPTLAQTKLIVMT---TSDRLDTVQELEG 1077
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGN-----IRNWELPSMSLRHLLLGRKILIVD 893
+ I ++KP+R+S L L A N E + + + KIL+V+
Sbjct: 1078 MDISGYLIKPVRASRLLDCLVSAFAPQEPENQSRVSCEPKEATAQNPKPAKSALKILLVE 1137
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
D+ VN V L G CV G++A L +D MD QMP +DGY+
Sbjct: 1138 DHEVNQMVTLNQLAMLGFEADCVGNGEEAIAQLT-QQNYDLVLMDCQMPILDGYD 1191
>gi|301057596|ref|ZP_07198676.1| PAS domain S-box protein [delta proteobacterium NaphS2]
gi|300448320|gb|EFK12005.1| PAS domain S-box protein [delta proteobacterium NaphS2]
Length = 1052
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 177/558 (31%), Positives = 269/558 (48%), Gaps = 81/558 (14%)
Query: 408 ATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL 467
TV I + +E E + +AE A+ AKS+FLA +SHEIRTPMN V+G D+L+D+ L
Sbjct: 478 GTVMDITERKETERLQQEARDRAERANAAKSEFLANMSHEIRTPMNAVIGFTDLLLDSGL 537
Query: 468 DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKS 527
D Q DY +T + SG+ L+SLIN++LD +K+E+G L+ E + F+ + D+ + +
Sbjct: 538 DDIQMDYAKTIKQSGEGLISLINDILDFSKIEAGDLDFEEIDFDPELLAYDICDMIRPRI 597
Query: 528 QDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 587
+K +E+ +I D VP+ + GDP R RQ++TNLM N+ KFTE G I + S+
Sbjct: 598 GEKPIEILCHIGDTVPDHIKGDPTRVRQVLTNLMANAPKFTEAGEIEL----------SL 647
Query: 588 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 647
+VE E +G + L SV DTG G
Sbjct: 648 DVEEE---------------------------DEGR-----------VKLHASVRDTGIG 669
Query: 648 IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 707
I IF PF Q S +R +GGTG+GLSI K + M G++ S GS F FT
Sbjct: 670 IAGNKLELIFDPFQQADGSTTRKYGGTGLGLSICKQISRLMGGDVWAESDEGKGSIFHFT 729
Query: 708 AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 767
A G + + + P S+S G KAL+VD K+ +++ +GI++ +
Sbjct: 730 AWLGKSETKAARPYT------PVSLS----GKKALLVDDNDTNLKILAAYLKPVGIRLVL 779
Query: 768 VSDQLQCLSQIASG-----------SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816
++ + L + S + I I+ EV + LF + + L
Sbjct: 780 LNKGVDVLPLLESAIGEQDPFDICITDIQMPIMSGYEVARQ----IRLFESPVSGLQTSI 835
Query: 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE-- 874
+S + +S+ A + V + KP+R L L+R +G G+ RN
Sbjct: 836 RSLPLMALSSVRGQDAKRCRE-VGFDGFLGKPIRRERLYRMLERILGAAVAGDQRNSVEQ 894
Query: 875 ---LPSMSLR-HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH 930
+ S+R + +IL+ +DN VN K+A LK+ G V G++A E+LM
Sbjct: 895 GEIMTQYSVREEMKRSVRILLAEDNPVNQKLAKIMLKKAGYQVEVANNGREAIEILMASR 954
Query: 931 Q-FDACFMDIQMPEMDGY 947
F FMD+QMPEMDG+
Sbjct: 955 NGFHLIFMDVQMPEMDGF 972
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP----HQFDACFMDI 939
L G+K L+VDDN+ NLK+ AA LK G +V + +G LL FD C DI
Sbjct: 748 LSGKKALLVDDNDTNLKILAAYLKPVGIRLVLLNKGVDVLPLLESAIGEQDPFDICITDI 807
Query: 940 QMPEMDGYEM---LPCFES 955
QMP M GYE+ + FES
Sbjct: 808 QMPIMSGYEVARQIRLFES 826
>gi|163853824|ref|YP_001641867.1| PAS sensor protein [Methylobacterium extorquens PA1]
gi|163665429|gb|ABY32796.1| PAS sensor protein [Methylobacterium extorquens PA1]
Length = 693
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 171/546 (31%), Positives = 257/546 (47%), Gaps = 97/546 (17%)
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
E K +AEAA+VAKS+FLATVSHE+RTP+NG+LGM D+L+DT LD Q+ YV + SGKA
Sbjct: 159 EAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKA 218
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L+ L++ +LD +++E+G+L+L A F++ A+++ V+ L + ++QDKG+E+A+ I+D +
Sbjct: 219 LLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAA 278
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 604
+GD R RQI+ NL GN+IKFT+ G + V++
Sbjct: 279 LRVGDADRVRQILVNLAGNAIKFTQAGGVGVSLA-------------------------- 312
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
R +G L+++VEDTG GIP E +F F Q
Sbjct: 313 ---RSGEGQGE--------------------GLVLTVEDTGPGIPEERIPILFEEFEQGD 349
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
S S H GTG+GL+I++ LV RM G I S GSTF
Sbjct: 350 DSAS--HEGTGLGLAITRRLVERMNGTIEARSTVGRGSTFRVVLPLPAAEGA-------- 399
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASG 781
M+ + S++ K L+V P +A + R G VV+ L LS +A
Sbjct: 400 MSPETPSLAPR----KVLIVAASPYQAPFLARRLSRSGAAAVVVNSAEAALDALSGVAFD 455
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
+ I + L D +V L R CG + L LL S R + +
Sbjct: 456 ALIADRSL-------GDAAVRRLAAEAAR---CGVRCSLILL--SPFDRREFGAPNAAGF 503
Query: 842 PSVIMKPLRSSML--------------AASLQRAMGVGNKG-----NIRNWELPSMSLRH 882
S ++KP+R+ L A G G ++ + S++
Sbjct: 504 DSYLIKPVRARSLFDRLLEPRPAPARSPADATAKTGTSQPGPRQPAPVKTTPGKTGSIQT 563
Query: 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
GR++L+ +DN +N +A L+R GA V+ G +A FD +DI+MP
Sbjct: 564 AARGRRVLLAEDNPINALLATKALERLGAQVIHARDGLEALAAAEGQGPFDLALIDIRMP 623
Query: 943 EMDGYE 948
+DG E
Sbjct: 624 GLDGLE 629
>gi|421351118|ref|ZP_15801483.1| sensory box protein [Vibrio cholerae HE-25]
gi|395951563|gb|EJH62177.1| sensory box protein [Vibrio cholerae HE-25]
Length = 1331
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 257/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 761 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 842 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 892 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R G+ +L+V+DN
Sbjct: 947 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHADFDLVLMDMQMPVMDG 1050
>gi|269140062|ref|YP_003296763.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202]
gi|387868577|ref|YP_005700046.1| BarA sensory histidine kinase [Edwardsiella tarda FL6-60]
gi|267985723|gb|ACY85552.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202]
gi|304559890|gb|ADM42554.1| BarA sensory histidine kinase [Edwardsiella tarda FL6-60]
Length = 919
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 166/523 (31%), Positives = 260/523 (49%), Gaps = 81/523 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G +M T L TQ DY+ T + S L+
Sbjct: 278 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVMKTPLSATQIDYLHTIERSANNLL 337
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE + F LR +D+V +L + + DKG+EL + + + VPE +
Sbjct: 338 TIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVRNDVPEHV 397
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R +Q++TNL+GN+IKFTEKG+I + + L + ++E+E ++ +G ++
Sbjct: 398 LGDPMRLQQVLTNLLGNAIKFTEKGNIDIRIELRSQTAQAVELEVQVHD-----TGIGIS 452
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+R QS++F F Q S
Sbjct: 453 ER-------------------------------------------QQSQLFQAFRQADAS 469
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R HGGTG+GL I++ L+ M G+I F S P+ GSTF F H ++N
Sbjct: 470 ITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGSTFWF-------------HIRLELN 516
Query: 727 NQ--PNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 783
+ P+S+ E QG L ++ P+ A+ + ++ +QV +Q+ S
Sbjct: 517 HNAPPSSLPLERLQGQTLLYIESNPVAAQCTLDMLKVTPLQVTYCPQ----FAQVIPDSH 572
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
+++L V TS++T + L ++ L S + ++T I S
Sbjct: 573 -YDILLFGLPV---KTSLTTESMQEKLSLALRLADRVILALPSHTLHDSDT-LKARGIRS 627
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
+ KPL SS L +L + N +R ++ S L L ++ VDDN NLK+
Sbjct: 628 CLFKPLASSRLLPAL-----MDNALPLRAPQVISPHGARLPL--TVMAVDDNPANLKLIG 680
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L + G++A H D MDIQMPEMDG
Sbjct: 681 ALLGELVQHTLLCHSGEEALAAARERH-LDIILMDIQMPEMDG 722
>gi|365092001|ref|ZP_09329252.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax sp. NO-1]
gi|363415738|gb|EHL22864.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax sp. NO-1]
Length = 1033
Score = 225 bits (574), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 168/533 (31%), Positives = 248/533 (46%), Gaps = 86/533 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+ +AE A KS FLA +SHEIRTPMN V+GM + + T+L Q+DYV Q SG+ L+
Sbjct: 259 RARAEDASQMKSDFLANMSHEIRTPMNAVIGMSHLALATDLTPRQRDYVEKIQRSGQHLL 318
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
LIN++LD +K+E+GKLE+E V F+LR +LD+V +L S K KG+EL + +P+ L
Sbjct: 319 GLINDILDFSKIEAGKLEVEVVDFDLRGVLDNVANLVSEKCAHKGLELLFDVDPALPDHL 378
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R QI+ N N++KFTE+G I V V E V D V
Sbjct: 379 RGDPLRLGQILVNYANNAVKFTERGEIIVRV--TETVRDDTGVL---------------- 420
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
L V+DTG G+ E QSR+F F Q S
Sbjct: 421 ------------------------------LRFEVQDTGIGLTSEQQSRLFRSFEQADTS 450
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+IS+ L G M GE+G S +GSTF FTA G G++ +
Sbjct: 451 TTRKYGGTGLGLAISRKLAGLMGGEVGVQSQAGVGSTFWFTARLGLGTA----------H 500
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+ P + + +G LVVD + + R+ V S SG + +
Sbjct: 501 HAPLLPTPDLRGRHVLVVDDSEQARHILGEMLTRMSFTVTTAS----------SGKEAVA 550
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL----------LANSISSSRANTST 836
+ ++ F++ + GF + L + +
Sbjct: 551 LARAAEQAGRP---CELAFLDWMMPGMDGFDTHRALASLQRPPHTIIVTAAGRDDVQDEL 607
Query: 837 DGVSIPSVIMKPLR-SSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVD 893
+ ++ KP+ S+M A++Q G + R P + HL + G ++L+VD
Sbjct: 608 QRAGLTLMLSKPVSPSAMFDAAMQALGGQARSADGRAAHAPRHAT-HLSAIAGARVLLVD 666
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
DN++N +V A L G AV G+ A ++L +D MD+QMP MDG
Sbjct: 667 DNDLNQQVGAELLSGAGLAVDVAHNGQVALDMLAQT-SYDLVLMDMQMPVMDG 718
>gi|59712689|ref|YP_205465.1| hybrid sensory histidine kinase BarA [Vibrio fischeri ES114]
gi|59480790|gb|AAW86577.1| hybrid sensory histidine kinase, in two-component regulatory system
with GacA [Vibrio fischeri ES114]
Length = 931
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 195/670 (29%), Positives = 308/670 (45%), Gaps = 112/670 (16%)
Query: 306 GYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTL-N 364
GY+ D+ SL +L Q IF + + ++ + D +S + +
Sbjct: 155 GYIAIELDLSSL------RLQQYQEIFSALLVLALGLGLSGIFAYRLMQDVTQPISHMVS 208
Query: 365 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVEE 418
D R+ + R + K L + I + I+ H I QAT + +E+
Sbjct: 209 VVDRIRRGHLDVRIENKLHGELDTLKNGINAMAISLSEYHVEMQQSIDQATSDLRETLEQ 268
Query: 419 DYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 475
+EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T L QQDY+
Sbjct: 269 LEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTSLSENQQDYL 328
Query: 476 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 535
+T + S L+++IN++LD +K+E+GKL LE + F+ + LD+V+SL + + +KG+E+
Sbjct: 329 QTIERSANNLLTIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEIT 388
Query: 536 VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 595
+ I RVP LIGDP R +Q++ NL+GN+IKFTEKG+I ++V L
Sbjct: 389 LKIDQRVPSGLIGDPLRIQQVLNNLVGNAIKFTEKGNIDISVEL---------------- 432
Query: 596 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 655
K + D ++L V DTG GI Q++
Sbjct: 433 --------------------------------KHLTDDYVDLQFVVRDTGIGISERQQAQ 460
Query: 656 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS- 714
+F F Q SISR +GGTG+GL I++ L+ +M GEIG S + GSTF FT
Sbjct: 461 LFQAFSQADASISRRYGGTGLGLVITQKLISQMGGEIGLSSRLHQGSTFWFTIRMNPTDL 520
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV-------EV 767
NEH+ Q+ + K L+++P A + + G+ V E+
Sbjct: 521 PMLNEHDITQLERK-----------KLLLIEPNMQSASILQQQFISHGVFVTYRSTLPEI 569
Query: 768 VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ L ++S SK ++ +++ + + ST+ V G S L + +
Sbjct: 570 IEPHDYALISLSSNSK-PSIETIQEMTSQLSANCSTIIV--------GLPSTELALTDEL 620
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM---SLRHLL 884
+ T +S P K L + ++ LQ ELP + +
Sbjct: 621 NQFSHITC---LSKPFAKKKLLDALLVEKDLQPV-----------PELPDLMAHASEEQK 666
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
L K++ VDDN NLK+ +A L V+ + G A + H FD MDIQMP+M
Sbjct: 667 LPIKVMAVDDNPANLKLISALLSEQVETVITCDNGLDAVQQATEQH-FDIILMDIQMPKM 725
Query: 945 DGYEMLPCFE 954
DG ++ C E
Sbjct: 726 DG--VMACKE 733
>gi|344338545|ref|ZP_08769477.1| integral membrane sensor hybrid histidine kinase [Thiocapsa marina
5811]
gi|343801827|gb|EGV19769.1| integral membrane sensor hybrid histidine kinase [Thiocapsa marina
5811]
Length = 763
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 158/525 (30%), Positives = 257/525 (48%), Gaps = 76/525 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++AE+A +AK QF+A +SHEIRTPMNGVLG+L+ML L Q+ V A S ++L+
Sbjct: 242 KEQAESASIAKGQFVANMSHEIRTPMNGVLGLLEMLSHERLSAEQRGLVDVAHTSAESLL 301
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+ESG+L+ E + F+LR +++DV LF+ ++ K +EL ++ +P +
Sbjct: 302 NVINDVLDFSKIESGRLDFERIPFDLRRLVEDVAGLFTASARSKQLELVCFVPPGLPARV 361
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R RQI+TN++GN++KF+ G + + V
Sbjct: 362 MGDPHRLRQILTNVLGNAVKFSLSGEVALRV----------------------------- 392
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D C G F+ + DTG G+ E +R+F PF+Q S
Sbjct: 393 DVCAEEAGRSRFS-------------------FEISDTGIGMTPEQLARLFKPFVQADGS 433
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R GG+G+GL+ISK L+ M G+I S GS F F + S T+ +
Sbjct: 434 TTRRFGGSGLGLAISKDLIELMGGDIQVESTFGRGSRFLVRLPFDHQSETAEPTD----- 488
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSK 783
+ +G + L VD ++ +++Q G+ E V+D L+ L + + +
Sbjct: 489 ------GAGLEGRRILCVDDNATNLEILGHYLQEWGVAYEAVTDGPTALERLVRAQARDR 542
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
+++ ++ E D +R +L LL++ + + V +
Sbjct: 543 PFEAAVLDLQMPEMD---GLALARAIRATPGIAAVRLILLSSGGCPEPVGEAAETVDL-- 597
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS--LRHLLLGRKILIVDDNNVNLKV 901
V+ KP+R +L +L + + G R P + L + GR +L+ +DN VN +V
Sbjct: 598 VLSKPVRQGLLRDALAQVLVTG-----RPIPDPGATPILDRPMTGR-VLLAEDNPVNQQV 651
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L R G VE G +A E L ++DA MD+QMP +DG
Sbjct: 652 ARGMLMRLGIEADLVENGAEAIERLA-SGRYDAVLMDMQMPVLDG 695
>gi|424660224|ref|ZP_18097471.1| sensory box protein [Vibrio cholerae HE-16]
gi|408050909|gb|EKG86037.1| sensory box protein [Vibrio cholerae HE-16]
Length = 1331
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 169/531 (31%), Positives = 258/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T+LD TQ+ YV S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDTTQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 761 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGEGSTFEFSVVCGLQDAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 842 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 892 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGYMKSFLVTAYGREINLEGENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R G+ +L+V+DN
Sbjct: 947 L----VDALIVKPVNPSNLLDAIMTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A + L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALDRL-EHADFDLVLMDMQMPVMDG 1050
>gi|240141277|ref|YP_002965757.1| PAS sensor hybrid histidine kinase [Methylobacterium extorquens
AM1]
gi|240011254|gb|ACS42480.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
extorquens AM1]
Length = 698
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 171/541 (31%), Positives = 256/541 (47%), Gaps = 92/541 (17%)
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
E K +AEAA+VAKS+FLATVSHE+RTP+NG+LGM D+L+DT LD Q+ YV + SGKA
Sbjct: 169 EAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKA 228
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L+ L++ +LD +++E+G+L+L A F++ A+++ V+ L + ++QDKG+E+A+ I+D +
Sbjct: 229 LLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAA 288
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 604
+GD R RQI+ NL GN+IKFT+ G + V++
Sbjct: 289 LRVGDADRVRQILVNLAGNAIKFTQTGGVGVSLA-------------------------- 322
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
R +G L+++VEDTG GIP E +F F Q
Sbjct: 323 ---RSGEGQGE--------------------GLVLTVEDTGPGIPEERIPILFEEFEQGD 359
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
S S H GTG+GL+I++ LV RM G I S GSTF
Sbjct: 360 DSAS--HEGTGLGLAITRRLVERMNGTIEARSTVGRGSTFRVMLPLPAAEGA-------- 409
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASG 781
M+ + S++ K L+V P +A + R G VV+ L LS +A
Sbjct: 410 MSPETPSLAPR----KVLIVAASPYQAPFLARRLSRSGAAAVVVNSAEAALDALSGVAFD 465
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
+ I + L D +V L R CG + L LL S R + +
Sbjct: 466 ALIADRSL-------GDAAVRRLAAEAAR---CGVRCSLILL--SPFDRREFGAPNAAGF 513
Query: 842 PSVIMKPLRSSML---------AASLQRAMGVGNKGNIRNWELPSMS-----LRHLLLGR 887
S ++KP+R+ L A + A G + + S + GR
Sbjct: 514 DSYLIKPVRARSLFDRLLEPRPAPARSPADATAQPGPAKTASGKTASGKTAPTKTAAPGR 573
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
++L+ +DN +N +A L+R GA V+ G +A FD +DI+MP +DG
Sbjct: 574 RVLLAEDNPINALLATKALERLGAQVIHARDGLEALAAAEGQGPFDLALIDIRMPGLDGL 633
Query: 948 E 948
E
Sbjct: 634 E 634
>gi|422910139|ref|ZP_16944781.1| sensory box protein [Vibrio cholerae HE-09]
gi|341633891|gb|EGS58672.1| sensory box protein [Vibrio cholerae HE-09]
Length = 1331
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 169/531 (31%), Positives = 259/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T+LD TQ+ YV S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDTTQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + +L+ + TL
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------GQLNEQQVTLR 760
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + + +F F
Sbjct: 761 -------------------------------------FAVKDTGIGIAQDKLNDLFDAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G+I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGEGSTFEFSVVCGLQDAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 842 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 892 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R +G+ +L+V+DN
Sbjct: 947 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFVGQSLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A + L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALDRL-EHADFDLVLMDMQMPVMDG 1050
>gi|223939410|ref|ZP_03631288.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
gi|223891902|gb|EEF58385.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
Length = 1436
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 155/547 (28%), Positives = 263/547 (48%), Gaps = 77/547 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K KAE A KS FLA +SHEIRTPMN ++G+ + + T+L Q+DY+ +G +L+
Sbjct: 694 KAKAEEATQMKSMFLANMSHEIRTPMNAIIGLSHLALKTQLTPKQRDYIGKVHNAGTSLL 753
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+GKL+LE V F L ++ V +L + K+ +KG+E +++ +PE L
Sbjct: 754 AVINDILDFSKIEAGKLDLEVVDFKLDEVITSVTTLTAQKAHEKGLEFLAHVTPGIPEFL 813
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R QI+TN + N++KFTE+G I + + L+E
Sbjct: 814 LGDPLRLGQILTNFVNNAVKFTERGEIRLNIELIER------------------------ 849
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ + + L SV DTG G+ E +++F PF Q S
Sbjct: 850 ------------------------TGEKLQLKFSVRDTGIGMTTEQAAKLFQPFTQADMS 885
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R HGGTG+GL+I + LV M G I S P GSTF FT S N + ++
Sbjct: 886 TTRKHGGTGLGLTICRRLVELMGGRIWLESEPGAGSTFYFTVWL----SIGNRQGTGKI- 940
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--ASGSKI 784
+ + ++ LVVD P ++ + + +V+VV+ ++ + S+
Sbjct: 941 -----IPEKLAELRVLVVDDNPAACEILEEPLANIVKRVDVVASGKDAITAVKQKDASEP 995
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
+++ ++ + D ++ F+ + L +L + + + +
Sbjct: 996 YDILFMDWRMPGMDGLQTSRFIKSDETL---RHQPHIVLVTAFGREEVREEAERLQLDGF 1052
Query: 845 IMKPLRSSMLAASLQRAMGVGNKG-NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
++KP+ SM L ++ ++ E + LR G +IL+ +DN++N ++A
Sbjct: 1053 LVKPVTRSMTVDMLVNVFSEASQEISVSVEEEQAAKLR----GARILLAEDNDINQQIAV 1108
Query: 904 AGLKRYGAAVVCVERGKKATELLM---PPHQFDACFMDIQMPEMDGYEML------PCFE 954
L+ GA V G +A ++ P FD MD+QMPEMDGY+ P F
Sbjct: 1109 ELLEGAGATVNVANNGLEAVGIVFNGPQPPPFDVVLMDLQMPEMDGYQATAKLRADPRFA 1168
Query: 955 SFLLIAI 961
+ +IA+
Sbjct: 1169 TLPIIAM 1175
>gi|16329648|ref|NP_440376.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|383321389|ref|YP_005382242.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383324559|ref|YP_005385412.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383490443|ref|YP_005408119.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384435709|ref|YP_005650433.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803]
gi|451813808|ref|YP_007450260.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|1652132|dbj|BAA17056.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|339272741|dbj|BAK49228.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803]
gi|359270708|dbj|BAL28227.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359273879|dbj|BAL31397.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277049|dbj|BAL34566.1| hybrid sensory kinase Hik14 [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407957531|dbj|BAM50771.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|451779777|gb|AGF50746.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
Length = 1462
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 169/542 (31%), Positives = 265/542 (48%), Gaps = 74/542 (13%)
Query: 424 MELKKK---AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 480
+EL+K AEAA+ AK +FLA +SHEIRTPMNGV+GM ++L+ T+L++ Q DYV+T +
Sbjct: 762 LELEKATWAAEAANRAKGEFLAMMSHEIRTPMNGVIGMTELLIMTDLNLQQLDYVQTIRQ 821
Query: 481 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 540
SG+ L+++IN++LD +K+E+ KL LE +F LR +++ VL +F ++ K +EL I
Sbjct: 822 SGETLLTIINDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARAKHLELTYGIDP 881
Query: 541 RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 600
+ P ++GD R RQI++NL+GN++KFTEKG + +TV
Sbjct: 882 QTPARILGDQVRLRQILSNLIGNALKFTEKGEVVLTV----------------------- 918
Query: 601 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660
G P D S+ P S + ++ DTG GIPL+ Q R+F F
Sbjct: 919 KGEPF-DPAESYHTILNL-------PHPSH-----RICFNLRDTGIGIPLDRQDRLFKSF 965
Query: 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 720
QV S +R +GGTG+GL IS+ L M G + S P +GS F F + + E
Sbjct: 966 SQVDSSTTRKYGGTGLGLVISQRLTQMMGGVLTVTSEPGVGSNFRFCILTTAQAPALAEA 1025
Query: 721 NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 780
+S Q + +G + L+VD ++ + Q G+ + L A
Sbjct: 1026 DSVQ----------QMKGKQVLIVDDNETNRRILQDQCQAWGLVCHCFTSGESALDWFAR 1075
Query: 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
+ IL ++ + TL ++LR+ G + LL++ + + S
Sbjct: 1076 CPDLDAAIL---DLQMPNMDGITL-AHHLRQFAQGKDLPIILLSSGLVAGADELSV---- 1127
Query: 841 IPSVIMKPLRSSMLAASL----QRAMGVGNKG-NIRNWELPSM-----------SLRHLL 884
+V+ KP+R S++ SL Q ++G+ + +LP + L
Sbjct: 1128 FQTVLNKPVRQSLIFDSLVNIFQGSIGLADYAPQFDQLDLPEFVPDGDGLPTEDNATSLQ 1187
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
+IL+ +DN VN KVA L G V G++ + L +D MD+QMP M
Sbjct: 1188 PALQILLAEDNLVNQKVAHQMLNNLGYPVAIANNGQEVIDALEKKF-YDLVLMDMQMPVM 1246
Query: 945 DG 946
DG
Sbjct: 1247 DG 1248
>gi|153828763|ref|ZP_01981430.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae 623-39]
gi|148875716|gb|EDL73851.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae 623-39]
Length = 1331
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 170/531 (32%), Positives = 256/531 (48%), Gaps = 81/531 (15%)
Query: 425 ELKKKAEAADV---AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
EL+K EAAD AK FLA +SHEIRTPMN +LGM + ++T LD TQ+ YV S
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINES 651
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
K L+ +IN++LD +K+E+GKL +E + FNL +LD+V ++ S K+Q+KG+E + I
Sbjct: 652 AKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPH 711
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P LIGDP R Q++ NL GN++KFT +G I ++ + ++L+ + TL
Sbjct: 712 IPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARV-----------SQLNEQQVTLR 760
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+V+DTG GI + +F F
Sbjct: 761 -------------------------------------FAVKDTGIGIAQDKLDDLFDAFS 783
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q SI+R +GGTG+GLSISK LV M G I S GSTF F+ V G + +
Sbjct: 784 QADNSITRQYGGTGLGLSISKQLVELMGGHITVHSEEGKGSTFEFSVVCGLQDAKMRD-- 841
Query: 722 SQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+S G+ + LVVD + + + V VS+ + LS+I
Sbjct: 842 ----------ISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEI 891
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL---ANSISSSRANTS 835
K +M+ V+ W + ++ LG K FL+ I+ N+
Sbjct: 892 Q--QKPFDMLFVD---WNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLEGENSK 946
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++I+KP+ S L ++ + G+ + + N + R G+ +L+V+DN
Sbjct: 947 L----VDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNE--AHHNSRPNFAGQSLLLVEDN 1000
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VN +VA L+ G VV G++A E L FD MD+QMP MDG
Sbjct: 1001 EVNQEVALGLLQDTGLNVVVANHGQEALERL-EHTDFDLVLMDMQMPVMDG 1050
>gi|254563786|ref|YP_003070881.1| PAS sensor hybrid histidine kinase [Methylobacterium extorquens
DM4]
gi|254271064|emb|CAX27071.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
extorquens DM4]
Length = 703
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 171/546 (31%), Positives = 257/546 (47%), Gaps = 97/546 (17%)
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
E K +AEAA+VAKS+FLATVSHE+RTP+NG+LGM D+L+DT LD Q+ YV + SGKA
Sbjct: 169 EAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKA 228
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L+ L++ +LD +++E+G+L+L A F++ A+++ V+ L + ++QDKG+E+A+ I+D +
Sbjct: 229 LLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAA 288
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 604
+GD R RQI+ NL GN+IKFT+ G + V++
Sbjct: 289 LRVGDADRVRQILVNLAGNAIKFTQAGGVGVSLA-------------------------- 322
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
R +G L+++VEDTG GIP E +F F Q
Sbjct: 323 ---RSGEGQGE--------------------GLVLTVEDTGPGIPEERIPILFEEFEQGD 359
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
S S H GTG+GL+I++ LV RM G I S GSTF
Sbjct: 360 DSAS--HEGTGLGLAITRRLVERMNGTIEARSTVGRGSTFRVVLPLPAAEGA-------- 409
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASG 781
M+ + S++ K L+V P +A + R G VV+ L LS +A
Sbjct: 410 MSPETPSLAPR----KVLIVAASPYQAPFLARRLSRSGAAAVVVNSAEAALDALSGVAFD 465
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
+ I + L D +V L R CG + L LL S R + +
Sbjct: 466 ALIADRSL-------GDAAVRRLAAEAAR---CGVRCSLILL--SPFDRREFGAPNAAGF 513
Query: 842 PSVIMKPLRSSML--------------AASLQRAMGVGNKG-----NIRNWELPSMSLRH 882
S ++KP+R+ L A G G ++ + S++
Sbjct: 514 DSYLIKPVRARSLFDRLLEPRPAPARSPADATAKTGTSQPGPRQPAPVKTTPGKTGSIQT 573
Query: 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
GR++L+ +DN +N +A L+R GA V+ G +A FD +DI+MP
Sbjct: 574 AARGRRVLLAEDNPINALLATKALERLGAQVIHARDGLEALAAAEGQGPFDLALIDIRMP 633
Query: 943 EMDGYE 948
+DG E
Sbjct: 634 GLDGLE 639
>gi|113969059|ref|YP_732852.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
gi|113883743|gb|ABI37795.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
Length = 1767
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 160/523 (30%), Positives = 258/523 (49%), Gaps = 69/523 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++A+AA AK FLA +SHEIRTPMN ++GM + + TELD Q++YV + + K+L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASKSLL 1089
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+GKL++E+V F L +L+D+ +FS K+ K +EL ++ VP L
Sbjct: 1090 SIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPNVPRHL 1149
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD R Q++ NLM N+IKFTE+G + +++ LVE+ D + + + S L+ A
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQQNDDVVLRFSVRDSGIGLTAEQQA 1209
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
K FK+F+Q DT S
Sbjct: 1210 ------KLFKSFSQ---------------------ADT---------------------S 1221
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I K LV M G IG S GSTF FT Q +
Sbjct: 1222 TTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYFTVKL------------QISS 1269
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
Q +V+ E +GM LV D + R ++ +G +V+ V + +++ + +
Sbjct: 1270 GQKLTVAQELEGMSILVADDNATARDIMRTTLESMGFRVDTVRSGEEAVTRCSQQEYAVA 1329
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+I W+ +++L + L+ ++ ++ + + + + I
Sbjct: 1330 LI-----DWKMPNLDGIETAKQIKQLAKN--APRILMVSAHATQEFLSQIEALGLAGYIS 1382
Query: 847 KPLRSSMLAASLQRAMG-VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905
KP+ +S L + ++G G RN E L L G++IL+V+DN +NL+VA
Sbjct: 1383 KPISASRLLDGIMNSLGRAGVLPVRRNSESIDPKLLLPLKGKRILLVEDNEMNLEVATEF 1442
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L++ G + G+ A + L FD MD QMP MDGY+
Sbjct: 1443 LEQVGIILSIATNGQIALDKL-AQQSFDLVLMDCQMPVMDGYQ 1484
>gi|323494892|ref|ZP_08099984.1| sensory box sensor histidine kinase/response regulator [Vibrio
brasiliensis LMG 20546]
gi|323310856|gb|EGA64028.1| sensory box sensor histidine kinase/response regulator [Vibrio
brasiliensis LMG 20546]
Length = 1318
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 172/553 (31%), Positives = 272/553 (49%), Gaps = 80/553 (14%)
Query: 398 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
++ +VG + T ++ + E + + K+ A+A AK +FLA +SHEIRTPMNG+LG
Sbjct: 573 VSGIVGILLDLTERKLMETE-----LRDAKETADAMSRAKGEFLANMSHEIRTPMNGILG 627
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
M+ + ++TELD Q Y+ S K L+ +IN++LD +K+E GKL +E + F+L + D
Sbjct: 628 MVHLALNTELDPAQHKYLTRINESAKNLLGIINDILDFSKIEVGKLNIETIDFSLDEVFD 687
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
++ ++ S K+Q+K +E + I +VP LIGDP R Q++ NL GN++KFTE+G + V V
Sbjct: 688 NLTNVISLKAQEKKIEFLLDIDPQVPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVVAV 747
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 637
IE+ TE D++ L
Sbjct: 748 --------RIELLTE---------------------------------------RDVV-L 759
Query: 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697
SV+DTG GI E + +F F Q SI+R GGTG+GLSISK LV M G++ S
Sbjct: 760 HFSVKDTGIGIDKEKIAHLFDAFSQADSSITREFGGTGLGLSISKQLVELMGGQLSVSST 819
Query: 698 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 757
GSTF FT G + +M + V+ G +ALVVD +
Sbjct: 820 LGAGSTFAFTITCGLQEA--------KMRDISKPVAG-LAGKRALVVDDNDSARNILVTL 870
Query: 758 IQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817
+ + + VS+ + L +I + +++ V+ W + +
Sbjct: 871 LNAMHFDAKAVSNGFEALDEIRNSQ--FDLLFVD---WNMPGLNGIELLQTAQNEQLLEH 925
Query: 818 SKLFLL---ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 874
SK FL+ IS +A++ + S+I+KP+ S L ++ + G+ + RN
Sbjct: 926 SKNFLVTAYGREISLDQASSKL----VDSLIVKPVNPSNLLDAIMDSFGIEHV--TRNT- 978
Query: 875 LPSMSL-RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 933
P+ L + + G+ IL+V+DN VN +VA LK V+ + G++A +L H D
Sbjct: 979 -PANQLEKPVFGGQTILLVEDNEVNQEVAIGLLKGTNVNVLTADNGQQAINML-EQHPVD 1036
Query: 934 ACFMDIQMPEMDG 946
MD+QMP +DG
Sbjct: 1037 LVLMDMQMPVLDG 1049
>gi|124268043|ref|YP_001022047.1| signal transduction histidine kinase-like protein [Methylibium
petroleiphilum PM1]
gi|124260818|gb|ABM95812.1| signal transduction histidine kinase-like protein [Methylibium
petroleiphilum PM1]
Length = 1001
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 166/524 (31%), Positives = 257/524 (49%), Gaps = 67/524 (12%)
Query: 433 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEV 492
A AKSQF+AT+SHEIRTPMNGVLGM ++L+ T LD Q+ + + SG++L+ +IN++
Sbjct: 335 ASQAKSQFMATMSHEIRTPMNGVLGMTELLLGTALDSRQRRFAQAVYRSGESLLEIINDI 394
Query: 493 LDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGR 552
LD +K+E+GKLEL F RA+++DVL L + ++Q++G+EL+ +P L GD R
Sbjct: 395 LDFSKIEAGKLELAPADFTPRALVEDVLELLAPRAQERGLELSFREEPGLPPALHGDALR 454
Query: 553 FRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSW 612
RQ++TNL+ N+IKFTE G + V + VE ET L++ DR W
Sbjct: 455 LRQVLTNLVANAIKFTEHGEVVVEMRRVEPTA----AETALAT----------GDRL--W 498
Query: 613 KGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672
+ + V DTG GIP EA SR+F F Q ++R +G
Sbjct: 499 ------------------------VELCVRDTGIGIPPEALSRLFIAFSQASSGMARRYG 534
Query: 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSV 732
GTG+GL+IS+ LV M G I S P +GS F SS + + ++++ P
Sbjct: 535 GTGLGLAISRQLVELMSGSITVRSQPGVGSRFCVRLPLSPASSDVDV-DMLELHDMP--- 590
Query: 733 SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS---GSKIINMIL 789
++ LVVD V + G++V V +D + L ++ + ++ ++ L
Sbjct: 591 -----ALRVLVVDDNETNRTVLENLLGAWGMEVVVANDGVHALERLHAERDAARSFDIAL 645
Query: 790 VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL 849
++ ++ D L + + F ++ +S+SS V + KP+
Sbjct: 646 IDMQMPRLD----GLQLADRISAEPDFADVKLIMLSSVSSPDDAKRAQAVGFKRFVNKPV 701
Query: 850 RSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRY 909
R + L ++ GV G + + +G IL+V+DN VN +V L+ +
Sbjct: 702 RKAELRQAILGVSGVAGAGGGSSRK----------IGAHILVVEDNPVNQEVIGQMLRHF 751
Query: 910 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCF 953
G V + L +FD MDIQMP MDG E L F
Sbjct: 752 GCRVQLASSALEGLRALC-AERFDLIMMDIQMPGMDGVEALGWF 794
>gi|144898313|emb|CAM75177.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase, HAMP region:Histidine
kinase A, N-terminal [Magnetospirillum gryphiswaldense
MSR-1]
Length = 935
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 166/578 (28%), Positives = 269/578 (46%), Gaps = 102/578 (17%)
Query: 387 LAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSH 446
LA+ T + +L A +V A + + ED + + K A+AA+ AKS+FLAT+SH
Sbjct: 255 LAVVTVLSVLTFAVMVAKQILAGSALLQAMVED---LRQAKTGADAANQAKSEFLATMSH 311
Query: 447 EIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 506
EIRTPMNG++GM +L+DT L+ Q + T + S ++L+++IN++LD +K+E+GKLE E
Sbjct: 312 EIRTPMNGIIGMTSLLLDTRLERDQAHFANTVRVSAESLLTIINDILDFSKMEAGKLEFE 371
Query: 507 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK 566
SF L +++ V+ + + +DK ++L+ +I GD GR RQ++ NL GN++K
Sbjct: 372 ETSFELVPLIEGVVDILGPRLRDKNLDLSCFIPPAAHGVFRGDAGRLRQVLLNLAGNAVK 431
Query: 567 FTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 626
FT +G + + V + D + F
Sbjct: 432 FTNQGGVVLEVMV---------------------------DDSDPARALLRF-------- 456
Query: 627 FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVG 686
++ DTG GIP A+ ++F F Q S +R GG+G+GL+I K +V
Sbjct: 457 -------------TITDTGIGIPEAAKGKLFGTFTQAEASTARRFGGSGLGLAICKRIVT 503
Query: 687 RMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 746
M G+IGF S GSTF F + ++ P + S + LVVD
Sbjct: 504 MMGGDIGFDSSEGKGSTFWFQVPL---------PRTDEIPADP-APSMPLAEVHILVVDD 553
Query: 747 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVE----------QEVWE 796
I ++ + +Q G QV + ++ L + +G++ M+L +
Sbjct: 554 NSINREIFQRQLQAWGAQVSTAFNGMEALEALRAGTRFHVMVLDHLMPGLSGIDLAAILR 613
Query: 797 KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAA 856
DT+++ L + L+A S+ V I SV++KP+R S L
Sbjct: 614 GDTALAHLPI---------------LMATSVGGPEVMQQAQAVGIGSVLLKPVRQSALLH 658
Query: 857 SLQRAMGVGNK--------GNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKR 908
+L +G G G + + P+M LR IL+ +DN +N +VA L +
Sbjct: 659 ALLALLGKGEDTSPHVLGTGLVDDEAPPAMPLR-------ILVAEDNAINQQVAVGLLNK 711
Query: 909 YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
G + G +A EL+ +D MD+QMP +DG
Sbjct: 712 LGHRADVADDGAEAVELVR-AGDYDLVLMDMQMPRVDG 748
>gi|440682762|ref|YP_007157557.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428679881|gb|AFZ58647.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 1288
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 177/543 (32%), Positives = 257/543 (47%), Gaps = 87/543 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AE A++AKS FLAT+SHEIRTPMN ++GM ML+DT L Q D V T + S AL+
Sbjct: 621 KQTAETANMAKSNFLATMSHEIRTPMNAIIGMSGMLLDTSLTSEQLDCVETIRNSSNALL 680
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+ESGKLELEA F+LR +++ L L + ++ KG+EL I+ VP +
Sbjct: 681 TIINDILDFSKIESGKLELEAQPFDLRLCVEEALDLLAPQAASKGIELMYLIATDVPIFI 740
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGD R RQI+ NLM N+IKFT+ G + VT+ E V S E + + ++T G P
Sbjct: 741 IGDITRLRQILWNLMSNAIKFTKVGEVMVTITAREMVSTSGCYELQF-AVRDTGIGIP-R 798
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
DR H R+F PF QV S
Sbjct: 799 DRLH--------------------------------------------RLFKPFSQVDVS 814
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
++R +GGTG+GL ISK L M G + S PN GSTF FT +F SS N ++
Sbjct: 815 MTRRYGGTGLGLVISKRLCEIMGGRMWVDSQPNQGSTFYFTVIFPVDSSAINS----SIS 870
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
P ++ L VD +R ++ +Q LG++V+VV L +
Sbjct: 871 TDPELLNQRL----LLAVDNINLRQCLT-LRLQSLGLEVQVVESNTAMLQHLEQEKPFAL 925
Query: 787 MIL-VEQEVWEK-DTSVSTLFVNNLRKLG---CGFQSKLFLLANSISSSRANTSTDGVSI 841
IL ++ W + + R L ++ K L +S+
Sbjct: 926 AILDIDSPDWNALNLPAKIRDIPKQRDLPLVMLSYKGKQTLEVKQVSA----------EF 975
Query: 842 PSVIMKPLRSSMLAASLQRAMG---------------VGNKGNIRNWELPSMSLR-HLLL 885
+ + KP+R L +L + + + + +LP++ + L
Sbjct: 976 TAFLYKPVRQYQLYHTLLHIIQGSWFTKVIKDSTDSIIPSYSRLSKPDLPTIDTKLSKSL 1035
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
KIL+V+D +N K+A L R G G +A E L +D FMDIQMPEMD
Sbjct: 1036 PLKILLVEDVLINQKIALQMLNRLGYRADVANDGHEALEALQ-RQLYDVVFMDIQMPEMD 1094
Query: 946 GYE 948
G+E
Sbjct: 1095 GWE 1097
>gi|114048796|ref|YP_739346.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
gi|113890238|gb|ABI44289.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
Length = 1767
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 160/523 (30%), Positives = 258/523 (49%), Gaps = 69/523 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++A+AA AK FLA +SHEIRTPMN ++GM + + TELD Q++YV + + K+L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASKSLL 1089
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+GKL++E+V F L +L+D+ +FS K+ K +EL ++ VP L
Sbjct: 1090 SIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPNVPRHL 1149
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD R Q++ NLM N+IKFTE+G + +++ LVE+ D + + + S L+ A
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQQNDDVVLRFSVRDSGIGLTAEQQA 1209
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
K FK+F+Q DT S
Sbjct: 1210 ------KLFKSFSQ---------------------ADT---------------------S 1221
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I K LV M G IG S GSTF FT Q +
Sbjct: 1222 TTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYFTVKL------------QISS 1269
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
Q +V+ E +GM LV D + R ++ +G +V+ V + +++ + +
Sbjct: 1270 GQKLTVAQELEGMSILVADDNATARDIMRTTLESMGFRVDTVRSGEEAVTRCSQQEYAVA 1329
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+I W+ +++L + L+ ++ ++ + + + + I
Sbjct: 1330 LI-----DWKMPNLDGIETAKQIKQLAKN--APRILMVSAHATQEFLSQIEALGLAGYIS 1382
Query: 847 KPLRSSMLAASLQRAMG-VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905
KP+ +S L + ++G G RN E L L G++IL+V+DN +NL+VA
Sbjct: 1383 KPISASRLLDGIMNSLGRAGVLPVRRNSESIDPKLLLPLKGKRILLVEDNEMNLEVATEF 1442
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L++ G + G+ A + L FD MD QMP MDGY+
Sbjct: 1443 LEQVGIILSIATNGQIALDKL-AQQSFDLVLMDCQMPVMDGYQ 1484
>gi|262273705|ref|ZP_06051518.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886]
gi|262222120|gb|EEY73432.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886]
Length = 914
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 165/524 (31%), Positives = 257/524 (49%), Gaps = 84/524 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +QQDY++T + S L+
Sbjct: 277 KKNAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSSSQQDYLQTIEKSANNLL 336
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+GKL LE + F+ LD+V+ L + + +KG+EL + I R+P +
Sbjct: 337 TIINDILDFSKLEAGKLLLENIPFDFEDSLDEVMRLLAPMAHEKGLELNLRIDPRIPAGV 396
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q++TNL+GN+ KFTE+GHI V+V L ++ + +E++
Sbjct: 397 IGDPLRIQQVLTNLIGNATKFTERGHINVSVELKQQRDERLELQ---------------- 440
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ DTG GI QS++F F Q S
Sbjct: 441 --------------------------------FVIRDTGIGISERQQSQLFQAFRQADTS 468
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR +GGTG+GL I++ LV +M G+IGF S + GSTF FT
Sbjct: 469 ISRRYGGTGLGLVITQKLVQQMGGDIGFSSRLHQGSTFWFTMTLIK-------------T 515
Query: 727 NQPNSVSSEFQGMKA---LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 783
+ P + +G+K L+++P + R + L I + ++ L A +
Sbjct: 516 DLPLVQPIDAEGLKGQSLLLIEPNAESRHMMRDRLSHLSIDIVDYAE----LPDNAPFTS 571
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK-LFLLANSISSSRANTSTDGVSIP 842
+ + EV DT + + K F K +F L + + + + GV+
Sbjct: 572 CALICVDAAEVPTADTLAA------MAKQAESFTDKVIFCLPTTELALSESLLSSGVA-- 623
Query: 843 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 902
+ + KPL L LQ G + ++ P++ + + ++ VDDN NLK+
Sbjct: 624 ACLAKPLSVRKLIEQLQ-----GQRHSLAPLP-PAVETQTDKVPISVMAVDDNPANLKLI 677
Query: 903 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A LK VV GK+A E +FD MDIQMPEMDG
Sbjct: 678 TALLKERVTHVVTASDGKQAVEQAQ-TQKFDLILMDIQMPEMDG 720
>gi|170748811|ref|YP_001755071.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
gi|170655333|gb|ACB24388.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
Length = 676
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 162/521 (31%), Positives = 253/521 (48%), Gaps = 72/521 (13%)
Query: 428 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 487
++AEAA VAKS+FLATVSHE+RTP+NG+LGM D+++ TEL+ Q+ YV + SG+AL+
Sbjct: 165 ERAEAASVAKSRFLATVSHEMRTPLNGILGMADLVLGTELNPEQRTYVEAVRTSGQALLG 224
Query: 488 LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 547
LI+ VLD +++E+G+L+L A F+L A+ + V+ L + ++QDKG+E+A+ +++ P ++
Sbjct: 225 LIDGVLDFSRIEAGRLDLAAEPFDLPALSEGVVELLAPRAQDKGIEIALDVAEDFPAAVL 284
Query: 548 GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 607
GD R RQI+ NL GN+IKFTE+G + V++
Sbjct: 285 GDADRVRQILINLAGNAIKFTERGGVGVSL------------------------------ 314
Query: 608 RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667
GF G ++++V DTG GIP E +F F Q S
Sbjct: 315 ------GFARAGTGG-------------EVVLAVADTGPGIPEERLPILFEEFEQGDGSA 355
Query: 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 727
SR+H GTG+GL+I++ LV RM G I S GSTF + +
Sbjct: 356 SRSHEGTGLGLAITRRLVTRMGGRIEADSRLGRGSTFRVLLPLAEVAGAEGVGRAPLPTL 415
Query: 728 QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINM 787
P + L+V P +A + R G V+ D L SG+ +
Sbjct: 416 APR---------RCLIVADSPFQAPYLARSLSRAGAAT-VIVDSLDSGLDALSGAA-FDA 464
Query: 788 ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMK 847
+L ++ + DT+V + + R CG ++ L LL S R + ++K
Sbjct: 465 VLADRALG--DTAVRQI-ADAARA--CGVRTSLVLL--SPFDRRGFGAPGAAGFDGYLIK 517
Query: 848 PLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLK 907
P+R L L + + G + P + ++L+ +DN +N +A L+
Sbjct: 518 PVRPRSLFERL-----LASAGPVEAAAAPPAVPPRVGSSLRVLLAEDNPINALLATRALE 572
Query: 908 RYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
R GA VV G +A L FD +D++MP +DG+E
Sbjct: 573 RLGATVVHAADGLEALARLETDGPFDLALIDVRMPRLDGHE 613
>gi|381159961|ref|ZP_09869193.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
gi|380878025|gb|EIC20117.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
Length = 958
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 153/476 (32%), Positives = 253/476 (53%), Gaps = 42/476 (8%)
Query: 396 LVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGV 455
L IASL G + A A+++ + +L ++AE+A+ AKS+FLA V+HEIRTP+NGV
Sbjct: 344 LAIASLCG-LAIANARTYAELQRTIAQVTQLAEQAESANRAKSEFLANVTHEIRTPLNGV 402
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
+GM D+L+++ L+ Q V T + G AL++L+N+ LD AKVE+G L LE + F L +
Sbjct: 403 IGMTDLLLESALEREQCQRVETIRDCGTALLALVNDFLDFAKVEAGALRLETLPFALDEL 462
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
L L++ +++ +G++L I RVP L GDPGR RQ++ NL+GN+IKFTE+G + V
Sbjct: 463 LHSALAILEPRARAQGLKLHQEIDIRVPLHLRGDPGRLRQVLINLLGNAIKFTEQGEVRV 522
Query: 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 635
T+ L E S + G P + +T + P +
Sbjct: 523 TIGLAAEAPGSAQ------------PGQP-------EQAEQTERPEEPGQP--------V 555
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
L V+V DTG GIP + +F F QV S +R GGTG+GL+I K L M GE+G
Sbjct: 556 RLRVAVSDTGIGIPEDKLGTLFAKFSQVDTSTTRRFGGTGLGLAIVKQLAELMGGEVGVS 615
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS--EFQGMKALVVDPRPIRAKV 753
S GSTF FTA ++ E ++ + P +++S + Q + L+ + + ++
Sbjct: 616 SCLGEGSTFWFTAKL-EVAAAPLEPRAKSVALAPIALASARDQQPARVLLAEDNRVNQQI 674
Query: 754 SRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 813
+ + RLG +V V D + L+ + + +++L++ ++ D +T + R
Sbjct: 675 AEAQLARLGFEVRTVGDGFEALAALR--EQCFDLVLMDVQMPRMDGFAATARIRTARD-- 730
Query: 814 CGFQSK----LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865
G ++ + + A+++ R G++ ++KPL+ + LA L R +G+G
Sbjct: 731 -GVRTPTVPIIAMTAHAMHGYRERCLAAGMN--DYLVKPLQPADLAEVLGRWLGIG 783
Score = 47.0 bits (110), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
++L+ +DN VN ++A A L R G V V G +A L FD MD+QMP MDG+
Sbjct: 661 RVLLAEDNRVNQQIAEAQLARLGFEVRTVGDGFEALAALRE-QCFDLVLMDVQMPRMDGF 719
>gi|414069249|ref|ZP_11405244.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas sp. Bsw20308]
gi|410808364|gb|EKS14335.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas sp. Bsw20308]
Length = 1587
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 165/534 (30%), Positives = 261/534 (48%), Gaps = 83/534 (15%)
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
KAE A VAKSQFLAT+SHEIRTPMNGVLGML+++ L + V A+ S +L+ +
Sbjct: 1063 KAEDAAVAKSQFLATMSHEIRTPMNGVLGMLELIELENLSKPIETKVGIAKTSAHSLLGV 1122
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
IN++LD +K E+GK+ELE+++FN ++ +V + + +QDKG+E+ + + P L G
Sbjct: 1123 INDILDFSKAEAGKIELESINFNAGDLIGEVAAAQAFTAQDKGIEIILDLVALEPSQLCG 1182
Query: 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
DPGR RQI+TNL+ N++KFT KG + V+ +D +E
Sbjct: 1183 DPGRIRQILTNLLSNAVKFTSKGEVVVSAQ-----IDKVE-------------------- 1217
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
+G + L + V+D+G GI + Q ++F+PF QV S +
Sbjct: 1218 ----QG--------------------LVLQIKVKDSGIGINEQKQHQLFSPFSQVDASTT 1253
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 728
R +GGTG+GL+I K L M GEI S GS FT T S E Q++N
Sbjct: 1254 REYGGTGLGLAICKQLCELMGGEISLKSEAGQGSEFTVTIQV--TQSEQKERYIQKLN-- 1309
Query: 729 PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ----CLSQIASGSKI 784
+G+ LVVD V ++ G V + D C S+I+S K+
Sbjct: 1310 -------IKGLSVLVVDDNETNRIVISQQLEHWGAHVALACDAYDALAMCESRISSNLKM 1362
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
++ +++ ++ + + + K F++ ++ SI+ + +
Sbjct: 1363 YDIAVLDMQM----PGMDGIGLCKALKANDDFKNMPLVMMTSIAGMEGAQRYSSIGFQAY 1418
Query: 845 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM------SLRHLLLGR--KILIVDDNN 896
KP+ ++ L ++L N + LP + SL+ LG +IL+V+DN
Sbjct: 1419 FPKPVTTADLISALSVIT-----NNEHDEALPLVTSGYISSLKKEKLGEPIQILLVEDNP 1473
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ--FDACFMDIQMPEMDGYE 948
+N +V+ LK+ + E G+ A ++L Q F A MD QMP MDG++
Sbjct: 1474 INQQVSTLMLKKLNCNITLAENGQLAIDILNTHGQGYFKAVLMDCQMPVMDGFD 1527
>gi|197336284|ref|YP_002156881.1| hybrid sensory histidine kinase BarA [Vibrio fischeri MJ11]
gi|197317774|gb|ACH67221.1| signal transduction histidine-protein kinase BarA [Vibrio fischeri
MJ11]
Length = 931
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 183/608 (30%), Positives = 287/608 (47%), Gaps = 105/608 (17%)
Query: 367 DPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVEEDY 420
D R+ + R + K L + I + I+ H I QAT + +E+
Sbjct: 211 DRIRRGHLDVRIENKLHGELDTLKNGINAMAISLSEYHVEMQQSIDQATSDLRETLEQLE 270
Query: 421 HGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRT 477
+EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T L QQDY++T
Sbjct: 271 IQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTSLSENQQDYLQT 330
Query: 478 AQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVY 537
+ S L+++IN++LD +K+E+GKL LE + F+ + LD+V+SL + + +KG+E+ +
Sbjct: 331 IERSANNLLTIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLK 390
Query: 538 ISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSK 597
I RVP LIGDP R +Q++ NL+GN+IKFTEKG+I ++V L
Sbjct: 391 IDQRVPSGLIGDPLRIQQVLNNLVGNAIKFTEKGNIDISVEL------------------ 432
Query: 598 NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 657
K + D ++L V DTG GI Q+++F
Sbjct: 433 ------------------------------KHLADDYVDLQFVVRDTGIGISERQQAQLF 462
Query: 658 TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA-VFGNGSST 716
F Q SISR +GGTG+GL I++ L+ +M GEIG S + GSTF FT +
Sbjct: 463 QAFSQADASISRRYGGTGLGLVITQKLISQMGGEIGLSSRLHQGSTFWFTIRMHPTDLPM 522
Query: 717 SNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV-------EVVS 769
N+H+ Q+ + K L+++P A + + G+ V E++
Sbjct: 523 LNDHDITQLEKK-----------KLLLIEPNMQSASILQQQFISHGVFVTYRSTLPEIIE 571
Query: 770 DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 829
L ++S SK ++ +++ + + ST+ V G S L + ++
Sbjct: 572 PHDYALISLSSNSK-PSIETIQEMTSQLSANCSTIIV--------GLPSTELALTDELNQ 622
Query: 830 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM---SLRHLLLG 886
T +S P K L + ++ LQ ELP + + L
Sbjct: 623 FSHITC---LSKPFAKKKLLDALLVEKDLQPV-----------PELPDLMAHASEEQKLP 668
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K++ VDDN NLK+ +A L V+ + G A + H FD MDIQMP+MDG
Sbjct: 669 IKVMAVDDNPANLKLISALLSEQVETVITCDNGLDAVQQATEQH-FDIILMDIQMPKMDG 727
Query: 947 YEMLPCFE 954
++ C E
Sbjct: 728 --VMACKE 733
>gi|428319759|ref|YP_007117641.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428243439|gb|AFZ09225.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1700
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 171/549 (31%), Positives = 269/549 (48%), Gaps = 70/549 (12%)
Query: 420 YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQ 479
+ + ++ A A KS FLA +SHEIRTPMNGV+GM D+L+ T L Q D+V+T +
Sbjct: 1005 FEQAQQAREAALEASRMKSLFLANMSHEIRTPMNGVMGMTDLLLKTNLTPEQLDFVQTLK 1064
Query: 480 ASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 539
SG+ L+S+IN++LD +K+E+G++ LE + FNL +++VL L + +Q+KG+E+ I
Sbjct: 1065 LSGQNLLSIINDILDLSKLEAGEMRLEILEFNLSICMNEVLDLLATPAQEKGIEVVALID 1124
Query: 540 DRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNT 599
VP + GD R RQI+TNL+ N+IKFTE G + + E++++ N
Sbjct: 1125 SDVPVQIKGDAARLRQILTNLINNAIKFTEAGEVVI----------------EVANASN- 1167
Query: 600 LSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659
G A + K + + K + DL+ L+ V DTG GI E + ++F
Sbjct: 1168 -PGLLAA--SENQKILENIEK------LKIENNDLMLLLFKVTDTGIGIAPEDKKKLFQS 1218
Query: 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNE 719
F QV S +R +GGTG+GL+ISK LV M G+IG S P GSTF FT T E
Sbjct: 1219 FTQVDASTTRKYGGTGLGLAISKELVELMGGQIGVESTPGQGSTFWFTV------PTVKE 1272
Query: 720 HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLS 776
+ + ++ + G K LV +P K+ G++VE V + + L
Sbjct: 1273 NLTAVGTACEVNLETVLAGRKMLVASDKPTVRKLLVRMAVLWGMEVEEVENGWMTIASLY 1332
Query: 777 QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF----QSKLFLLANSISSSRA 832
+ S + +++LV D + + +L +L Q+K +L ++ + A
Sbjct: 1333 KAVSLNSPYDIVLV-------DIQLPEMVAGSLERLRISEPAMQQTKWVVLTSTNQLAEA 1385
Query: 833 NTSTDGVSIPSVIMKPLRSSMLAASLQRAMG------------VGNKGN-IRNWELPSMS 879
+ + KP+++ L L A+ N+ + I N EL S+
Sbjct: 1386 KRLVNS-GFSGYLTKPVKAHRLFDCLANAIAPMTLMDEPRANLTSNRASAIDNRELASL- 1443
Query: 880 LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939
KIL+V+D +N KV L+ G G +A ++ ++D MD
Sbjct: 1444 --------KILLVEDTPINQKVGLNQLRVLGCTADVANNGAEALSMV-ALKKYDIVLMDC 1494
Query: 940 QMPEMDGYE 948
QMP +DGYE
Sbjct: 1495 QMPVLDGYE 1503
>gi|423686824|ref|ZP_17661632.1| GacS hybrid sensory histidine kinase [Vibrio fischeri SR5]
gi|371494892|gb|EHN70490.1| GacS hybrid sensory histidine kinase [Vibrio fischeri SR5]
Length = 931
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 183/608 (30%), Positives = 285/608 (46%), Gaps = 105/608 (17%)
Query: 367 DPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVEEDY 420
D R+ + R + K L + I + I+ H I QAT + +E+
Sbjct: 211 DRIRRGHLDVRIENKLHGELDTLKNGINAMAISLSEYHVEMQQSIDQATSDLRETLEQLE 270
Query: 421 HGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRT 477
+EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T L QQDY++T
Sbjct: 271 IQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTSLSENQQDYLQT 330
Query: 478 AQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVY 537
+ S L+++IN++LD +K+E+GKL LE + F+ + LD+V+SL + + +KG+E+ +
Sbjct: 331 IERSANNLLTIINDILDFSKLEAGKLLLENLPFDFQDSLDEVVSLLAPSAHEKGLEITLK 390
Query: 538 ISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSK 597
I RVP LIGDP R +Q++ NL+GN+IKFTEKG+I ++V L
Sbjct: 391 IDQRVPSGLIGDPLRIQQVLNNLVGNAIKFTEKGNIDISVEL------------------ 432
Query: 598 NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 657
K + D ++L V DTG GI Q+++F
Sbjct: 433 ------------------------------KHLTDDYVDLQFVVRDTGIGISERQQAQLF 462
Query: 658 TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS-ST 716
F Q SISR +GGTG+GL I++ L+ +M GEIG S + GSTF FT
Sbjct: 463 QAFSQADASISRRYGGTGLGLVITQKLISQMGGEIGLSSRLHQGSTFWFTIRMNPTDLPM 522
Query: 717 SNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV-------EVVS 769
NEH+ Q+ + K L+++P A + + G+ V E++
Sbjct: 523 LNEHDITQLERK-----------KLLLIEPNMQSASILQQQFISHGVFVTYRSTLPEIIE 571
Query: 770 DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 829
L ++S SK ++ +++ + + ST+ V G S L + ++
Sbjct: 572 PHDYALISLSSNSK-PSIETIQEMTSQLSANCSTIIV--------GLPSTELALTDELNQ 622
Query: 830 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM---SLRHLLLG 886
S + + KP L +L + K ELP + + L
Sbjct: 623 ---------FSHITCLSKPFAKKKLLDAL-----LVEKDRQPVPELPDLMAHASEEQKLP 668
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K++ VDDN NLK+ +A L V+ + G A + H FD MDIQMP+MDG
Sbjct: 669 IKVMAVDDNPANLKLISALLSEQVETVITCDNGLDAVQQATEQH-FDIILMDIQMPKMDG 727
Query: 947 YEMLPCFE 954
++ C E
Sbjct: 728 --VMACKE 733
>gi|423063248|ref|ZP_17052038.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
gi|406715370|gb|EKD10526.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
Length = 1493
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 182/614 (29%), Positives = 285/614 (46%), Gaps = 115/614 (18%)
Query: 389 ISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEI 448
+++ +GI + + + + V +E + E K AE A AKS+FLAT+SHEI
Sbjct: 687 VASQVGITIAQA---KLLEVEVKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEI 743
Query: 449 RTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 508
RTPMN V+GM +L+D EL Q+D+V T + SG AL+++IN++LD +K+ESGKLELE
Sbjct: 744 RTPMNAVIGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQ 803
Query: 509 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT 568
F LR L++ L L SG++ +KG+ELA I P+T++ D R RQ++ NL+ N+IKFT
Sbjct: 804 PFKLRNCLEECLELLSGRADEKGLELAYIIDPSTPKTILVDVTRLRQVLVNLVSNAIKFT 863
Query: 569 EKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFK 628
+G + + V K + D K
Sbjct: 864 SEGEVILAV--------------------------------------KATHPDAKKDVKK 885
Query: 629 SSSADLIN----LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 684
S +D L V DTG GIP + R+F F QV S +R +GGTG+GL+IS+ L
Sbjct: 886 SDDSDFTESHYVLQFEVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRL 945
Query: 685 VGRMKGEIGFVSIPNI-------------------------------GSTFTFTAVFGNG 713
M G++ S N+ GS F FT V
Sbjct: 946 SQLMNGKMWVASWVNLLDEYHDETSSLISSVAGNPPPDFVRPQVFRPGSIFYFTIVCSGF 1005
Query: 714 SSTSNEHNSQQMNNQPN--SVSSEF-QGMKALVVDPRPIRAKVSRYHIQRLG---IQVEV 767
N P+ S +F G K L+V+ I K+ ++ G ++V+
Sbjct: 1006 -------------NTPDLGEFSDDFLHGKKVLIVEHHDINQKLLIRQVKSWGMVPVRVKT 1052
Query: 768 VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK--LGCGFQSKLF--LL 823
+D L+ L + +++I++ + + D + + L K + ++ K F ++
Sbjct: 1053 GADALKVLHD----NPGLDLIILGINLPDMDEATLASRIRQLEKQMIAGKYRQKPFNLVM 1108
Query: 824 ANSISSSRA--NTSTDGVSIPSVIMKPLRSSMLAASLQR----AMGVGNKGNIRNWEL-- 875
N S++ GV++ ++ KPL+ S +L + + + +I+N E
Sbjct: 1109 FNYASNTEVLRRLEAQGVNVAGLVNKPLKQSQFYNTLMQIFADSQTIEKHYHIKNAESGY 1168
Query: 876 -PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 934
P++ H L +IL+ +DN N KVA L+R G G + + L Q+D
Sbjct: 1169 DPAIPQPHANL--RILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLEVLDALN-RQQYDV 1225
Query: 935 CFMDIQMPEMDGYE 948
MD+QMPEMDG E
Sbjct: 1226 ILMDVQMPEMDGLE 1239
>gi|359452292|ref|ZP_09241643.1| hypothetical protein P20495_0382 [Pseudoalteromonas sp. BSi20495]
gi|358050636|dbj|GAA77892.1| hypothetical protein P20495_0382 [Pseudoalteromonas sp. BSi20495]
Length = 1587
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 165/534 (30%), Positives = 261/534 (48%), Gaps = 83/534 (15%)
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
KAE A VAKSQFLAT+SHEIRTPMNGVLGML+++ L + V A+ S +L+ +
Sbjct: 1063 KAEDAAVAKSQFLATMSHEIRTPMNGVLGMLELIELENLSKPIETKVGIAKTSAHSLLGV 1122
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
IN++LD +K E+GK+ELE+++FN ++ +V + + +QDKG+E+ + + P L G
Sbjct: 1123 INDILDFSKAEAGKIELESINFNAGDLIGEVAAAQAFTAQDKGIEIILDLVALEPSQLCG 1182
Query: 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
DPGR RQI+TNL+ N++KFT KG + V+ +D +E
Sbjct: 1183 DPGRIRQILTNLLSNAVKFTSKGEVVVSAQ-----IDKVE-------------------- 1217
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
+G + L + V+D+G GI + Q ++F+PF QV S +
Sbjct: 1218 ----QG--------------------LVLQIKVKDSGIGINEQKQHQLFSPFSQVDASTT 1253
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 728
R +GGTG+GL+I K L M GEI S GS FT T S E Q++N
Sbjct: 1254 REYGGTGLGLAICKQLCELMGGEISLKSEAGQGSEFTVTIQV--TQSEQKERYIQKLN-- 1309
Query: 729 PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ----CLSQIASGSKI 784
+G+ LVVD V ++ G V + D C S+I+S K+
Sbjct: 1310 -------IKGLSVLVVDDNETNRIVISQQLEHWGAHVALACDAYDALAMCESRISSNLKM 1362
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
++ +++ ++ + + + K F++ ++ SI+ + +
Sbjct: 1363 YDIAVLDMQM----PGMDGIGLCKALKANDDFKNMPLVMMTSIAGMEGAQRYSSIGFQAY 1418
Query: 845 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM------SLRHLLLGR--KILIVDDNN 896
KP+ ++ L ++L N + LP + SL+ LG +IL+V+DN
Sbjct: 1419 FPKPVTTADLISALSVIT-----NNEHDEALPLVTSGYISSLKKEKLGEPIQILLVEDNP 1473
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ--FDACFMDIQMPEMDGYE 948
+N +V+ LK+ + E G+ A ++L Q F A MD QMP MDG++
Sbjct: 1474 INQQVSTLMLKKLNCNITLAENGQLAIDILNTHGQGYFKAVLMDCQMPVMDGFD 1527
>gi|414071079|ref|ZP_11407054.1| putative sensor protein [Pseudoalteromonas sp. Bsw20308]
gi|410806467|gb|EKS12458.1| putative sensor protein [Pseudoalteromonas sp. Bsw20308]
Length = 1120
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 168/560 (30%), Positives = 275/560 (49%), Gaps = 79/560 (14%)
Query: 395 ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 454
++ +A+L+G + ++ RI +E ++ K+ AE A AKS+FLA++SHEIRTPMNG
Sbjct: 571 LIAVAALIGSL-HSSQQRIETEQE----LVTAKETAEQAVAAKSEFLASMSHEIRTPMNG 625
Query: 455 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514
VLGML+++ T+LD Q+ ++ AQ+S ++L+++IN++LD +K+E+GKL+++ V FNL
Sbjct: 626 VLGMLNIIKQTKLDQQQEHHIELAQSSAQSLLNIINDILDFSKIEAGKLDIDNVQFNLPK 685
Query: 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 574
+L +V+ F+ K + +L + + +I DP R RQI+ NL+GN++KFT G +
Sbjct: 686 LLGEVVESFALKVEQNNTKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTLNGEVI 745
Query: 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 634
+ + D + F
Sbjct: 746 IVAKI----------------------------------------NDTTNGSF------- 758
Query: 635 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 694
L S+ DTG GI + Q+ +F F Q S +R GGTG+GL+I K L M GE+G
Sbjct: 759 --LQCSIIDTGIGIDFKKQATLFNSFTQADASTTRQFGGTGLGLAIVKQLCELMNGEVGV 816
Query: 695 VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 754
S+ GSTF+FT S + S + N+ L++D + A +
Sbjct: 817 TSVKGQGSTFSFTIKIQPRLSKEQDLPSHLIKNK-----------HILIIDECSLNANTA 865
Query: 755 RYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL-G 813
+ G VE ++D Q L+ + + + IL++ +EK + + + G
Sbjct: 866 SKQLSVWGASVECINDYQQILNYSHNEVQNTDAILIDYYFFEKASPECITALKGFINIQG 925
Query: 814 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV---GNKGNI 870
C KL ++A +S S+ + + I +I KPL S L SL + + +
Sbjct: 926 C----KLVIMA-PMSYSKEESKL-AIKIDCMIFKPLTPSDLFDSLTNDQFIERQQKQAQL 979
Query: 871 RNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH 930
+N +L M + +IL+V+DN VN VA+A LK+ G + + G +A L
Sbjct: 980 QN-KLTKMVATN-FSQPQILLVEDNKVNQVVASALLKQAGVSFDIAQNGFEAIVKLNTKQ 1037
Query: 931 --QFDACFMDIQMPEMDGYE 948
++ MD QMPEMDGY+
Sbjct: 1038 GEPYELILMDCQMPEMDGYQ 1057
>gi|383761056|ref|YP_005440038.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
gi|381381324|dbj|BAL98140.1| putative two-component hybrid sensor and regulator [Caldilinea
aerophila DSM 14535 = NBRC 104270]
Length = 1523
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 173/532 (32%), Positives = 266/532 (50%), Gaps = 75/532 (14%)
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
EL +AE A+ AKS+FLA +SHEIRTPMNGV+GM +L++TEL+ Q+ YV T ++SG+
Sbjct: 994 ELAAQAEQANRAKSEFLANMSHEIRTPMNGVIGMTGLLLETELNEEQRRYVETIRSSGET 1053
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L+++IN++LD +K+E+GKLELE + F+L +LDD + + K+Q+K +E P
Sbjct: 1054 LLAIINDILDISKIEAGKLELETLDFDLIDLLDDFAATLAVKAQEKRLEFICAADPETPR 1113
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 604
L GDPGR RQ++TNL N+++FTEKG + V V
Sbjct: 1114 HLRGDPGRLRQVLTNLAANALRFTEKGEVSVRV--------------------------- 1146
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
SP + + D + L V DTG GIP E IF F+QV
Sbjct: 1147 --------------------SPVRMTEGD-VTLRFVVRDTGIGIPKEKLPSIFEKFVQVD 1185
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
S +R +GGTG+GL+ISK LV M GEIG S GSTF FT S
Sbjct: 1186 ASTTRRYGGTGLGLAISKRLVELMGGEIGVESEVGRGSTFWFTVKLLRQSGV-------- 1237
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSDQLQCLSQIASG 781
Q S+ G++ L+VD ++ R + G++ E + L+ L +
Sbjct: 1238 --EQKPSLPDTLHGIRVLIVDDNATNREILRTQLSAWGMEPDEAEDAAAALRKLEEALQE 1295
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
K + +++ ++ E D + + + F+S ++ +S+ +
Sbjct: 1296 GKPYRLAILDLQMPEID----GIMLGRQIRSDERFRSLELIMMSSMGQDGEARNVLNNGF 1351
Query: 842 PSVIMKPLRSSMLAASL-----QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 896
+ +MKP+R S L ++ Q A+ +G K + +P +S ++ ++L+ +DN
Sbjct: 1352 AAYLMKPVRQSDLFNTVRQVLAQNALRLGGKSSENKPVIPKLSTPNV----RVLVAEDNA 1407
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VN +VA L+R GA V G ++ E L +D MD+QMP+MDG E
Sbjct: 1408 VNQQVALGILRRMGAHAEVVGSGAESIEALQ-QAPYDIVLMDVQMPDMDGLE 1458
>gi|150017373|ref|YP_001309627.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
NCIMB 8052]
gi|149903838|gb|ABR34671.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
NCIMB 8052]
Length = 951
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 174/571 (30%), Positives = 275/571 (48%), Gaps = 104/571 (18%)
Query: 398 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
I LV T RIA+ E + + K +AE+A++AKSQFLA +SHEIRTPMNG+ G
Sbjct: 293 IKYLVCTAQDITEQRIAEAE-----LYKAKVEAESANIAKSQFLANMSHEIRTPMNGIFG 347
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
L++L + L + Q+++VR A+++ L+++IN++LD +K+E+ KL LE +SFNLR +++
Sbjct: 348 FLELLESSNLSLEQREFVREAKSASDILLNIINDILDFSKIEAKKLVLENISFNLRTVIE 407
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
D +SLF K+ +KG++L I +P+ +IGDP R +QI+ NL+ N +KFT+ G I + V
Sbjct: 408 DAVSLFVPKTLEKGIQLYTIIDPTIPDEVIGDPSRLKQILNNLLSNGVKFTDAGEIAIKV 467
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQ-DGSTSPFKSSSADLIN 636
EE + + E+ + +SG + K FK+FNQ D ST
Sbjct: 468 DYFEEENEIALLTFEVRDTGIGISGKDIQ------KLFKSFNQADAST------------ 509
Query: 637 LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS 696
+R +GGTG+GLSI + LV M GEI S
Sbjct: 510 -------------------------------TRKYGGTGLGLSICRELVNMMDGEITVDS 538
Query: 697 IPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRY 756
+ + GSTF F V S ++EH S+ + + L+VD K++
Sbjct: 539 VLDKGSTFRF-CVRLKISKRASEH---------ISIFEKVNDVNILIVDNDENSRKITSS 588
Query: 757 HIQRLGIQVEVVSDQLQCLSQIASGSKI---INMILVEQEV-----WEKDTSVSTLFVNN 808
+++ G+ + V + +S I S + I+++++E E+ +E
Sbjct: 589 YLKGTGLHIIEVDGAGEAISTIISNNDTKNKISIVIIECEIPGMNCYE--------LART 640
Query: 809 LRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV---- 864
L+ + KL LL + G S S + KPL+ L + +G+
Sbjct: 641 LKNIPIAKNIKLILLMSRYKGDFKAAMEYGFS--SYLTKPLKRDDLLDCIAVNLGLKKED 698
Query: 865 ------GNKGNIRN-WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVE 917
NK ++N + L + +IL+ +DN VN K+ + LK G
Sbjct: 699 EEHFEDSNKNVVKNIYNLSEI---------RILLAEDNEVNRKIFISMLKSRGITCDVAL 749
Query: 918 RGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
GK+A + +D FMD QMP MDGYE
Sbjct: 750 DGKEALR-KVSEEDYDIVFMDCQMPVMDGYE 779
>gi|296123006|ref|YP_003630784.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
gi|296015346|gb|ADG68585.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
Length = 1135
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 163/533 (30%), Positives = 258/533 (48%), Gaps = 71/533 (13%)
Query: 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 480
+ E K AEAA+ AKS FLA +SHEIRTP+N ++GM +++MDT+L V Q+DY+R
Sbjct: 413 QALREAKDAAEAANRAKSDFLANMSHEIRTPLNAIIGMTELVMDTDLKVAQRDYLRMVLE 472
Query: 481 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 540
SG++L+ +IN++LD +K+E+G+L ++ F LR L D + S ++ K +ELA ++S
Sbjct: 473 SGESLLGIINDILDFSKIEAGRLHVDEQPFRLRDSLGDTMKSLSNRAHRKKLELAFHVSP 532
Query: 541 RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 600
VP+ + GD R RQ+I NL+GN++KFTE+G EVV + VE
Sbjct: 533 DVPDEVRGDAVRVRQVIINLLGNALKFTERG----------EVVLDVSVE---------- 572
Query: 601 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660
S +A+ + L V+DTG GI + IF F
Sbjct: 573 ----------------------------SRTAEQVTLHFKVQDTGIGIAKDKFESIFEAF 604
Query: 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 720
Q S +R +GGTG+GL+IS LV M+G+I S GSTF FT G E
Sbjct: 605 EQADSSTTRRYGGTGLGLAISARLVELMQGKIWVESEVGQGSTFHFTLNLG----VEAEG 660
Query: 721 NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC---LSQ 777
+ Q + +P + G++ L+VD ++ G++ + + ++ L
Sbjct: 661 SVQPLAQEP-----QLHGLRVLIVDDNQTNRRILEELTLLWGMRPRIAAGAIEARRELQH 715
Query: 778 IASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 837
+ I +I+ + ++ +D T + +L + + L+ S +
Sbjct: 716 AIDQGEPIRLIITDAQMPGEDGFSLTASIRSLENM----PAVEILMLTSGDRLEDLSRCQ 771
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKG--NIRNWELPSMSLRHLLLGRKILIVDDN 895
+ I ++KP++ S L S+ MG + +P S R+IL+ +D+
Sbjct: 772 QLGIAGYLIKPVKQSELYNSIVGIMGQAPRAVPMASAMAVPERSAN----SRRILLAEDS 827
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
N K+A L+R+G VV G +A E FD MD+QMPE+DG E
Sbjct: 828 LANQKLALGLLERWGHRVVVASNGIEAIERYR-SESFDLILMDVQMPELDGNE 879
>gi|261250376|ref|ZP_05942951.1| sensory box histidine kinase/response regulator [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|417953729|ref|ZP_12596772.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260938945|gb|EEX94932.1| sensory box histidine kinase/response regulator [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|342816845|gb|EGU51738.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 1199
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 162/533 (30%), Positives = 261/533 (48%), Gaps = 76/533 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+ +A +A+ AKS FLA +SHEIRTPMN ++GM + + T+L Q++Y+ + S +L+
Sbjct: 471 RDEANSANTAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQRNYIHKVKLSADSLL 530
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
LIN++LD +K+E+GKL++E V F+L +LD++ +L ++ ++G+EL ++I VP TL
Sbjct: 531 GLINDILDFSKIEAGKLDIENVDFHLENVLDNITNLVGLRASERGLELLIHIERDVPTTL 590
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R Q++ NL N++KFTEKG I ++V + + D +E+E
Sbjct: 591 VGDPLRLGQVLINLANNAVKFTEKGEIKISVRVAKRQGDDVELE---------------- 634
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
SVED+G G+ E ++F+ F Q S
Sbjct: 635 --------------------------------FSVEDSGIGMTKEQTDKLFSKFTQADSS 662
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+ISK L M G+I S GS F+F+ +T H +Q N
Sbjct: 663 TTRKYGGTGLGLAISKELSQLMGGDIRVESEFGQGSRFSFSI------ATKVSHALKQDN 716
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSK 783
S+ E +K L+VD + + L + + VS D L L +
Sbjct: 717 ---VSMPVELGKLKVLIVDDNASARIIVEDILHSLQFEAQSVSNVDDALNALETASQQQS 773
Query: 784 IINMILVEQEVWEKD-----TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD- 837
++++ + ++ KD SV F N Q K+ +L + T
Sbjct: 774 PYDLLISDWQMPGKDGIDLVESVYQRFTEN-------HQPKILMLTAYGREDLNDAFTHR 826
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDN 895
G++ PS++ KP+ +S L ++ GV N R+ L ++ L G +L+V+DN
Sbjct: 827 GLTTPSILDKPVTASHLFDAVIALYGVANTRISRSEAQEQHQLANVQQLAGAHLLLVEDN 886
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+N ++A L+ V G++A + H FD MD QMP MDGYE
Sbjct: 887 AINQELAVELLQGQQIKVTIAVNGQEAVD-YYKQHDFDGILMDCQMPIMDGYE 938
>gi|374294152|ref|YP_005041177.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
gi|357428150|emb|CBS91102.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
Length = 1314
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 168/541 (31%), Positives = 270/541 (49%), Gaps = 85/541 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++A+ A+ KS FLA +SHEIRTPMN V+G+ ++M T+L Q+DY+ AS ++L+
Sbjct: 536 KEEADRANRQKSDFLANMSHEIRTPMNAVIGLSHLMMKTDLTPRQRDYLDKIHASSRSLL 595
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN++LD +KVE+GKL +EA+ F++ +L +V ++ K ++KG+EL V ++ VP TL
Sbjct: 596 GIINDILDFSKVEAGKLTIEAIPFHVGDVLQEVATVVLPKLREKGLELIVDLNGDVPGTL 655
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R Q+I NL+ N++KFTE+G + VTV
Sbjct: 656 VGDPLRLGQVILNLVSNAVKFTERGEVVVTVG---------------------------- 687
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ G+ ++ L V V DTG G+ E + +F PF Q S
Sbjct: 688 ------------GRIGTADDYR--------LEVEVCDTGIGMSPEQTAALFRPFTQADTS 727
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT--AVFGNGSSTSNEHNSQQ 724
+R GGTG+GL+I + LV M G + S P GS F F+ G + +
Sbjct: 728 TTRRFGGTGLGLAICRQLVELMGGAVSVESRPGEGSIFRFSIRCRVAAGDTADDRLPRHL 787
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK- 783
M+ + LVVD + ++R G+ VE V+D L L ++ G
Sbjct: 788 MDR------------RVLVVDDSDAVRSILTDMLERFGLTVEAVADGLSALRRLEEGQAG 835
Query: 784 ---IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL----ANSISSSRANTST 836
+ +++++ + + D V TL LR L G Q + + A+ + + + +
Sbjct: 836 SQPPVELVVLDWRMPDLD-GVETL--RRLRAL-PGAQPPVVMTTAYGADGVQGA-LDGAL 890
Query: 837 DGVSIP-----SVIMKPLRSSMLAASLQRAMGVGN---KGNIRNWELPSMSLR-HLLLGR 887
DG++ P +V+ KP+ S + S+ A+G +R P+ S L+GR
Sbjct: 891 DGMAGPAGPVTAVLEKPVTPSAMFDSVMMALGGAGPRMADAVRRIHDPAQSTELSALVGR 950
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
+L+V+DN VN +VA L+ G + V G++A + L +FD MD+QMP +DGY
Sbjct: 951 TVLLVEDNLVNQQVACGLLELVGIEAMVVGSGEEALQCLREV-KFDLVLMDVQMPGLDGY 1009
Query: 948 E 948
E
Sbjct: 1010 E 1010
Score = 40.4 bits (93), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 843 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 902
SV +P S+ S++ + G+ + R LP RHL+ R++L+VDD++ +
Sbjct: 754 SVESRPGEGSIFRFSIRCRVAAGDTADDR---LP----RHLM-DRRVLVVDDSDAVRSIL 805
Query: 903 AAGLKRYGAAVVCVERGKKATELL-------MPPHQFDACFMDIQMPEMDGYEML 950
L+R+G V V G A L PP + +D +MP++DG E L
Sbjct: 806 TDMLERFGLTVEAVADGLSALRRLEEGQAGSQPPVEL--VVLDWRMPDLDGVETL 858
>gi|442319645|ref|YP_007359666.1| sensory box histidine kinase/response regulator [Myxococcus
stipitatus DSM 14675]
gi|441487287|gb|AGC43982.1| sensory box histidine kinase/response regulator [Myxococcus
stipitatus DSM 14675]
Length = 925
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 163/525 (31%), Positives = 264/525 (50%), Gaps = 82/525 (15%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KS FLAT+SHEIRTPMN ++GM ++++T L Q++++ T + S +AL++L+N+VLD +
Sbjct: 256 KSLFLATMSHEIRTPMNAIIGMTGLMLETHLSEEQREFISTIRQSSEALLTLLNDVLDFS 315
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+G+LE + F+LR ++ VL L + ++ +KG++L IS +VP+ ++GD R RQ+
Sbjct: 316 KIEAGRLEADLHPFDLRQCVESVLDLLAVRASEKGLDLGADISPQVPQVVMGDASRLRQV 375
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+ NL+GN++KFTE G V+V
Sbjct: 376 LLNLVGNALKFTESGGAVVSVD-------------------------------------G 398
Query: 617 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
T D +P+ S A V+DTG GIP+ Q +F PF Q+ +++R GGTG+
Sbjct: 399 TRRGDAPDAPWVLSFA--------VQDTGPGIPVTKQQGLFQPFNQLDVAVTRKFGGTGL 450
Query: 677 GLSISKYLVGRMKGEIGFVS--IPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS 734
GL+ISK LV M G I S +P G+TF F+ T+ + +QP
Sbjct: 451 GLAISKRLVEAMGGRIWVESEGVPGRGTTFFFSLTLQAAPQTTAGY---LRADQPA---- 503
Query: 735 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEV 794
QG + L+VD I ++ +Q G + ++ L+++ G++ +++L++Q++
Sbjct: 504 -LQGRRVLIVDDNAINRRLLGRQLQTWGAEPVEAGSGMEALAKLQPGAR-FDLVLIDQQM 561
Query: 795 WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML 854
D + L K+ LL + + RA S +V+ +P+++S L
Sbjct: 562 PGLDGPSLASRIKEREDL-----QKIPLLLLTSTGRRAVPPPGLFS--AVLSRPMKASHL 614
Query: 855 AASL-----QRAMGVG----NKGNIRNWELPS--MSLRHLLLGRKILIVDDNNVNLKVAA 903
+L Q V +G + E P + LR IL+V+DN N ++A+
Sbjct: 615 HDTLVSCFSQEVAPVNAEPPPQGTLAPRERPGDRVPLR-------ILLVEDNPTNQRLAS 667
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L R G V G++A E M +FD MD+QMPEMDG E
Sbjct: 668 LLLDRLGYQVQAASNGREALEWSM-RQRFDVVLMDLQMPEMDGLE 711
>gi|254445718|ref|ZP_05059194.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
gi|198260026|gb|EDY84334.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
Length = 1149
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 166/530 (31%), Positives = 263/530 (49%), Gaps = 84/530 (15%)
Query: 428 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 487
++AE A+ AKS FLA +SHEIRTPMNG++GM +L +T L+ Q DYV T +AS +AL+
Sbjct: 621 REAEEANRAKSYFLANMSHEIRTPMNGIIGMTGLLSETTLENEQHDYVDTIRASSEALLV 680
Query: 488 LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 547
+IN++LD +K+ESGKLE+E + F+LR +++ + + ++ +KG++++ VP +L+
Sbjct: 681 VINDILDFSKIESGKLEIENIMFDLRDCMEEAIDTLAIQATEKGLDVSYVFGKEVPGSLL 740
Query: 548 GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 607
GDP R RQ+I NL+GN++KFT KG + V V
Sbjct: 741 GDPTRLRQVIVNLIGNAVKFTAKGGVVVRV------------------------------ 770
Query: 608 RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667
PF D+I L V DTG GIP + R+F F QV S
Sbjct: 771 -----------------DPFHIKDDDVI-LHFKVTDTGIGIPADRIDRLFGSFSQVDAST 812
Query: 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 727
+R +GGTG+GL+ISK LV M G + S GSTF FT F N ++ S + + +
Sbjct: 813 TRKYGGTGLGLAISKNLVELMGGSMWVESEDGEGSTFHFTVSF-NRAAFSFDMGATR--- 868
Query: 728 QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINM 787
+P+ ++ G KA+V+D + + ++ ++V V L L + S N+
Sbjct: 869 KPDKIA----GNKAIVIDHQAFSCESLTSQLELFEVRV-VTGSTLGDLETLVSKHPDTNV 923
Query: 788 ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS-----ISSSRANTSTDGVSIP 842
+ VE + + L +L++ K+ LA I + R G +
Sbjct: 924 VFVE-------SGLGGLGYKDLKE-------KIRALAQRDDIRVIFTGRLGGVQLGENAD 969
Query: 843 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR----KILIVDDNNVN 898
+ + ++ L R + + K R + ++ LG +IL+ +DN +N
Sbjct: 970 AQTLSLIKPYKLENVKTRLLEICGKAAPR---IKKVAQDGTKLGEQKPLRILLAEDNVIN 1026
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
KVA K+ G + + G +A ++ ++F+ FMDIQMPEMDG E
Sbjct: 1027 QKVAKRLFKKMGYEISVAQNGLEAVAMI-GENEFELVFMDIQMPEMDGLE 1075
>gi|392382751|ref|YP_005031948.1| two-component hybrid sensor and regulator [Azospirillum brasilense
Sp245]
gi|356877716|emb|CCC98562.1| two-component hybrid sensor and regulator [Azospirillum brasilense
Sp245]
Length = 1179
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 171/575 (29%), Positives = 266/575 (46%), Gaps = 79/575 (13%)
Query: 403 GHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 462
G +F A +++ + + E K+KAEA +K +FLAT+SHEIRTPMNGV+GM +L
Sbjct: 442 GVLFAAFFRDMSERKRVERALTEAKEKAEAGQRSKMEFLATMSHEIRTPMNGVIGMAGLL 501
Query: 463 MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 522
+T LD Q+ Y T + S ++L+++IN++LD +K+++G+L LE F +++ V+ L
Sbjct: 502 QETHLDEEQRGYADTIRDSAESLLTIINDILDFSKIDAGRLTLEVSDFEAVPLVESVVEL 561
Query: 523 FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 582
+ ++ KG+ELA Y+ + L GDPGR RQI+ NL GN++KFT++G + + +
Sbjct: 562 LAPRATAKGLELACYVPPALHGPLRGDPGRLRQILINLAGNAVKFTDQGSVTIVL----- 616
Query: 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 642
S+E + G + H + + V
Sbjct: 617 ---SVEQDDAAGPDDRPEPGDSLVPAPHETP---------------------VTIRFEVR 652
Query: 643 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 702
DTG GI R+FT F QV S +R HGGTG+GL+I K L M G IG S+P GS
Sbjct: 653 DTGIGIAAADHKRLFTMFSQVDGSSARRHGGTGLGLAICKRLAELMGGRIGVHSLPGEGS 712
Query: 703 TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 762
F G+ T Q + G + L+VD + + + +G
Sbjct: 713 VFWVVIPLWRGTPTDAASAPQ--------APGAWTGRRILLVDDLAVNRDLLARQLAAMG 764
Query: 763 IQVEVVSDQLQCLSQI----ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818
++ E + L+++ A+G IL D + L L +
Sbjct: 765 LETESAATGEDALNRLLRAHATGRSFDAAIL--------DHCMPGLTGPELAARIRAVPA 816
Query: 819 KLFLLANSISSSRANTSTDGVSIPSV-IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 877
L +S R + + ++ V I+KP+RS+ L ++ R G R +P+
Sbjct: 817 LADLPLALATSHRMGETEEEAAVVDVRIVKPIRSTALRTAVSRLFATRAPGAARPDAVPA 876
Query: 878 MSLRHL---------------------LLG---RKILIVDDNNVNLKVAAAGLKRYGAAV 913
S + L G R+IL+ +DN VNL+V A L+R G AV
Sbjct: 877 DSKLDVSPPPSPRSGGPSAVPTPPGAPLTGTARRRILVAEDNPVNLQVTLALLRRAGHAV 936
Query: 914 VCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
V G +A + +P +D MD+QMPEMDG
Sbjct: 937 DSVSNGLEAVNAVAALP---YDLVLMDVQMPEMDG 968
>gi|375012435|ref|YP_004989423.1| PAS domain-containing protein [Owenweeksia hongkongensis DSM 17368]
gi|359348359|gb|AEV32778.1| PAS domain S-box [Owenweeksia hongkongensis DSM 17368]
Length = 1360
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 165/524 (31%), Positives = 240/524 (45%), Gaps = 84/524 (16%)
Query: 438 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497
S FLAT+SHEIRTPMNGV+GM +L+ T+L+ Q DYV T + SG AL+S+IN++LD +K
Sbjct: 844 SDFLATMSHEIRTPMNGVIGMTSLLLQTKLNAEQLDYVNTIRLSGDALLSVINDILDFSK 903
Query: 498 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 557
+E+G + LE F + +++ + L S + +KG+EL +I VP + GD R RQI+
Sbjct: 904 IEAGNMSLEEFPFEITQCVEEAVELLSSRVSEKGIELLYFIDPSVPAVVSGDITRLRQIL 963
Query: 558 TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 617
NL+ N+IKFTEKG I V V
Sbjct: 964 INLLSNAIKFTEKGEIVVNV---------------------------------------- 983
Query: 618 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 677
K + + SV DTG GI + Q ++FT F Q S +R +GGTG+G
Sbjct: 984 --------SAKKKEDSRVQIHFSVRDTGIGITADQQKKLFTAFTQADSSTTRKYGGTGLG 1035
Query: 678 LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 737
L+I K L M GEI S P GS F FT + +H + N N S
Sbjct: 1036 LAICKRLTSLMDGEIWVESTPGGGSDFQFTIM----QEVIRQHRIETDTNFEN--DSILY 1089
Query: 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEK 797
G K L+VD K+ GI V ++ + QI ++ + W
Sbjct: 1090 GRKCLIVDDNKTNLKILEKQFNLWGIDVTCFNNPQKAYKQI-----------IKTQNW-- 1136
Query: 798 DTSVSTLFVNNLRKLGCGFQSKLFLLANS-----ISSSRANTSTDGVS--IPSVIMKPLR 850
D + + L + + +L N +SS+ S ++ MKP R
Sbjct: 1137 DFMIFDFEMPGLDGIELAEKIRLRYSKNELPIILLSSAYPEVSEHKINSLFSHYFMKPTR 1196
Query: 851 SSMLAASLQRAMGVGNKGNIRNW------ELPSMSLRHLLLGRKILIVDDNNVNLKVAAA 904
S+L SL + + ++ N EL ++ +H L IL+ +DN VN K+A
Sbjct: 1197 HSILKKSLVKLLTTKDENLNSNAVETDIEELSMLASKHPL---TILLAEDNMVNQKLAVL 1253
Query: 905 GLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L++ G + V G + E + +D FMD+QMPEMDG E
Sbjct: 1254 TLEKMGYHMDVVANGFEVLEAI-ERQSYDLIFMDVQMPEMDGIE 1296
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
+L GRK LIVDDN NLK+ +G V C +KA + ++ +D D +MP
Sbjct: 1087 ILYGRKCLIVDDNKTNLKILEKQFNLWGIDVTCFNNPQKAYKQIIKTQNWDFMIFDFEMP 1146
Query: 943 EMDGYEM 949
+DG E+
Sbjct: 1147 GLDGIEL 1153
>gi|269101851|ref|ZP_06154548.1| BarA sensory histidine kinase [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161749|gb|EEZ40245.1| BarA sensory histidine kinase [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 921
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 171/527 (32%), Positives = 262/527 (49%), Gaps = 88/527 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGVLG ++ T L+ +QQDY+ T + S L+
Sbjct: 280 KKRAQEAARVKSEFLANMSHELRTPLNGVLGFTRQMLKTRLNPSQQDYLLTIEKSANNLL 339
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+GKL LE + F+ LD+V+ L + + +KG+EL + + DR+P +L
Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFAESLDEVMRLLAPTAHEKGLELTLKVDDRIPPSL 399
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGD R +Q++TNL+GN++KFTE+G+I VTV EL S K
Sbjct: 400 IGDALRIQQVLTNLIGNAVKFTERGNIDVTV--------------ELKSDK--------- 436
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ +G I L V DTG GI Q+++F F Q S
Sbjct: 437 ------------DDEG------------IELQFMVRDTGIGISERQQAQLFQAFSQADAS 472
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR +GGTG+GL I++ LV +M GE+ S + GSTF FT + ++ SQ ++
Sbjct: 473 ISRRYGGTGLGLVITQKLVSQMGGEVSLTSRLHQGSTFWFTVRL----TKTDLPVSQLID 528
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV-------EVVSDQLQCLSQIA 779
+S G K L+++P A V + + +G+ V E V L ++
Sbjct: 529 ------TSSLSGKKVLLIEPNMQAASVIQQRLINVGVHVTYRSVMPEDVERHDYTLLCLS 582
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
G + L++Q V++ + + V C ++L L +++ GV
Sbjct: 583 PGEQPPIATLIDQ-VFKAEQMTDNVIV-------CLPTTELALSERLVNA--------GV 626
Query: 840 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 899
S + + KPL L + G + LP + + ++ VDDN NL
Sbjct: 627 S--ACLGKPLSQRRL---FEVMCGDNEQMEPEQPLLPEPA--SPIQPLTVMAVDDNTANL 679
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K+ +A L V+ G+KA E FD FMDIQMPEMDG
Sbjct: 680 KLISALLCERVETVITATGGRKAVE-YAKQKAFDLIFMDIQMPEMDG 725
>gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
Length = 1499
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 167/535 (31%), Positives = 257/535 (48%), Gaps = 81/535 (15%)
Query: 425 ELKKKAEAADVA---KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
ELK+ +AA + K +F A VSHE+RTP+NGVLGML++L + L Q++YV+ A S
Sbjct: 258 ELKRARDAALESARIKGEFAANVSHELRTPLNGVLGMLELLRNMGLTPKQREYVQVACNS 317
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
G+ L+ LI +LD +++ESG+ +L+ F L+ ILDD + L +G++Q K ++L ++
Sbjct: 318 GETLLELIGNILDFSRIESGRFKLDPADFYLQEILDDAIGLLAGQAQRKDLDLGYVVAKN 377
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
VP +L GD R RQI+ NLMGN++KFTE+G + V V L+E+
Sbjct: 378 VPPSLRGDATRIRQILINLMGNAVKFTEQGEVSVEVQLLEK------------------- 418
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+A + L+ V+DTG GIP+E Q IF F
Sbjct: 419 -----------------------------TAKKLVLLFEVKDTGIGIPIEFQKHIFEAFS 449
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q S +R +GGTG+GL+I + LV M G+IG S GS F FT + +
Sbjct: 450 QADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVESKFGGGSRFWFTVPLEEAVALQERRD 509
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI---QVEVVSDQLQCLSQI 778
+ N G++ L+VD + + G+ E L+ L
Sbjct: 510 LNRAN---------VAGLRLLIVDDSTVSRRFLEQTFSFWGMYHGSAENGQQALKMLRSA 560
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
A + ++ L+++ + + V+ + ++ +S I R + T
Sbjct: 561 AIQGRAYDLALIDENMPGMEG------VDLVHRIA---ESPQISSVKIILMGRQHQPTVD 611
Query: 839 VS-IPSV---IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL-LLGRKILIVD 893
VS +P V I KP++ S L ++ + KG ELP ++ R IL+V+
Sbjct: 612 VSHLPGVVNYIAKPVQQSPLYNAIVTTVKQSGKG---QPELPLAAMEEPSFANRYILVVE 668
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
DN VN +VA LKR+G V G++A +L+ +D MD MP MDGYE
Sbjct: 669 DNRVNQQVAVGMLKRFGCHVEVAANGQEALDLV-ARKSYDLVLMDCHMPRMDGYE 722
>gi|312880876|ref|ZP_07740676.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
12260]
gi|310784167|gb|EFQ24565.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
12260]
Length = 1513
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 170/537 (31%), Positives = 258/537 (48%), Gaps = 70/537 (13%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
++EE + +A+ A+ AKS FLA +SHEIRTPMNG+LGM +L+DT+L Q+ +
Sbjct: 840 RLEEQTALARSMALQADQANRAKSDFLANMSHEIRTPMNGILGMAALLLDTDLTPEQRHF 899
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
QAS + L+ L+N++LD +K+E+G+L LE V F+LR++ DDV + + ++Q KG+E
Sbjct: 900 GEIVQASAENLLGLLNDILDLSKIEAGRLALEEVDFDLRSLFDDVGAALAAQAQAKGLEF 959
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ VP L GDPGR RQ++TNL+GN++KFT +G + V V E + ++V
Sbjct: 960 LGSVEPDVPSALRGDPGRLRQVLTNLLGNAVKFTHRGEVVVRARRVSESPERVQVRF--- 1016
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
S ++T G P AD ++L
Sbjct: 1017 SVRDTGIGIP---------------------------ADKVDL----------------- 1032
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
+F F Q S +R +GGTG+GL+ISK LV M GEIG S +GS F FT F
Sbjct: 1033 -LFQKFTQADASTTRHYGGTGLGLAISKNLVELMGGEIGVHSREGVGSEFWFTLDFAKQP 1091
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---Q 771
S + +G++ALVVD ++ + G+ VE V+D
Sbjct: 1092 GGEGARGGD---------SRDLKGVRALVVDDNATNREILLARLTGWGMAVEAVADGPSA 1142
Query: 772 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
L+ L ++ M +++ ++ D + KLG KL ++ +
Sbjct: 1143 LEVLRAASARGVPFEMAVLDMQMPGMDGETLGRILREDPKLGG---LKLVMMTSMGQRGD 1199
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILI 891
A+ + + + + KPLR L SL A+ G K + + +R L + L+
Sbjct: 1200 AHRMEE-IGFSAYLTKPLRHQDLRDSLT-AVLAGEKQPL----VTRHRIRELRRRGRALL 1253
Query: 892 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
V+DN VN +VA L+R G E G A L +D MD+QMP MDG E
Sbjct: 1254 VEDNEVNRQVALGMLRRLGLRADVAEDGLGALRAL-EEGDYDLVLMDVQMPGMDGVE 1309
>gi|182415728|ref|YP_001820794.1| response regulator receiver sensor hybrid histidine kinase
[Opitutus terrae PB90-1]
gi|177842942|gb|ACB77194.1| response regulator receiver sensor hybrid histidine kinase
[Opitutus terrae PB90-1]
Length = 758
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 168/537 (31%), Positives = 245/537 (45%), Gaps = 88/537 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K AEAAD AKS FLA +SHEIRTPMNGVLGM ++L+ T L+ Q D T SG++L+
Sbjct: 220 KDAAEAADRAKSVFLANMSHEIRTPMNGVLGMANLLLATPLNPEQHDLAETLCQSGESLL 279
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+G++ELEA+ F+L L+ L L + + K +EL V I VP +
Sbjct: 280 TIINDILDFSKIEAGRMELEAIDFDLADNLELALDLHAEAAARKHLELVVNIDPAVPRHV 339
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDPGR RQI+ NL+GN+IKFTEKG + V V VD
Sbjct: 340 RGDPGRLRQILLNLVGNAIKFTEKGEVVVKV-----TVD--------------------- 373
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
H+W + + L +V DTG GIP Q ++F PF+Q S
Sbjct: 374 ---HNWP-------------------NRVLLRFAVTDTGIGIPEWVQEKLFQPFVQADTS 411
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R GG+G+GL I K L M G IG S PN GSTF FT +
Sbjct: 412 TTRRFGGSGLGLVICKRLAELMSGSIGVESKPNEGSTFWFTVELKHAF------------ 459
Query: 727 NQPNSVS----SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSDQLQCLSQIA 779
P +V S +G AL+VD + ++ ++ +E V + L L +
Sbjct: 460 -HPVTVGVVPLSTLRGHHALIVDDNATNRSLLKHLCNAWSLRHSVMESVDEALVELHRAT 518
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
+ ++++ + + +D +N +L S + D
Sbjct: 519 AAGTPFDLVITDHHMPGRDGLDLAAAINR----DTTIPRPALVLLTSRGERLPQSQLDEY 574
Query: 840 SIPSVIMKPLRSSMLAASLQRAM--------GVGNKGNIRNWELPSMSLRHLLLGRKILI 891
+ +KP+ + L +L R + + + ++ P+ R ILI
Sbjct: 575 RFAACELKPVHARSLHTTLARVLAHIRPGVPALPDGNGVKPAAPPAKEAR-------ILI 627
Query: 892 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+DN VN KV L+ G V G++ E L + MD QMPEMDG E
Sbjct: 628 AEDNPVNQKVTLLQLRNLGYPADVVPNGREVLEALR-RKAYALVLMDAQMPEMDGVE 683
>gi|254442851|ref|ZP_05056327.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
gi|198257159|gb|EDY81467.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
Length = 795
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 169/533 (31%), Positives = 243/533 (45%), Gaps = 79/533 (14%)
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
EL ++A+AA+ KS FLA +SHEIRTPMNG+LGML++L D + Q D + TAQ S K+
Sbjct: 269 ELARQAKAANETKSSFLANMSHEIRTPMNGILGMLNLLEDMDNPADQADLILTAQDSAKS 328
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L+ ++NE+LD +K+E+ +++E F+LR + L S + DKG+EL I+ VP
Sbjct: 329 LLEIVNEILDFSKIEANAIDIEKTEFDLRDSIYGATDLVSLTAHDKGLELVAQIASDVPR 388
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 604
LIGDP R RQ+ NL+GNS+KFT++G + + V
Sbjct: 389 YLIGDPLRIRQLCINLLGNSLKFTKEGTVMLAV--------------------------- 421
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
+ P ++ L + DTG GIP E +F PF QV
Sbjct: 422 ---------------SKAAQQPRNAT-----RLRFEISDTGMGIPPEKVDTLFDPFSQVD 461
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
S +R GGTG+GLSI K L M GEIG S+ GS F F SS S S
Sbjct: 462 SSTTRNFGGTGLGLSICKKLAELMSGEIGVTSVVGEGSVFWFEIEVEEDSSKSKIEKSHY 521
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG--- 781
N Q + + + AK + + +VVS LS I G
Sbjct: 522 SNGQTR---------RPIFFESHKDVAKAIEQTLSAYAVSTQVVSQGESLLSMIEEGLRS 572
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS--TDGV 839
+ + + ++ + E V KL G + +SI +SR S T +
Sbjct: 573 GRAFDRVFIDTRIGESKAEALAQRV----KLTAGSSKPGLVAISSIGASRPEGSHFTLQL 628
Query: 840 SIP----SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
S P S++ L S LA+ + VG+ G ++ ++L+ +DN
Sbjct: 629 SKPLKEESLLQAVLDKSSLASVEKERRKVGSVGKVK---------VDFNTSARVLVAEDN 679
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VN KV L R G V GK+A + L +FD FMD QMP ++G+E
Sbjct: 680 KVNQKVIRMMLGRAGFDCELVNDGKEALDRLR-DEEFDLVFMDCQMPILNGFE 731
>gi|192361523|ref|YP_001983038.1| GacS [Cellvibrio japonicus Ueda107]
gi|190687688|gb|ACE85366.1| GacS [Cellvibrio japonicus Ueda107]
Length = 974
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 163/527 (30%), Positives = 252/527 (47%), Gaps = 74/527 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+K+A A KS+FLA SHEIRTP+NG+LG +++ + TEL+ Q++Y+ T + S + L+
Sbjct: 303 RKEALEASRVKSEFLANTSHEIRTPLNGILGFINLALKTELNEKQREYMETIRDSAQNLL 362
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN +LD +K+ESGKL L+ +R +D+VL + + + +K ++L YI +P L
Sbjct: 363 TVINGILDFSKIESGKLTLDYAPLPIRKTVDEVLHMLAPDAHEKNLQLITYIEPCIPRNL 422
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD RF+Q+++NL+ N+IK+++ G+I V + + + ET+
Sbjct: 423 LGDALRFKQVLSNLVTNAIKYSDAGNIIVDISIAQ------RQETQ-------------- 462
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
I L V+V D G G+ E Q +F+ F QV S
Sbjct: 463 ----------------------------ITLKVAVTDQGIGLSQEEQENLFSAFSQVDSS 494
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
SR H GTG+GL+I K LV RM GEIG VS P GSTF FTA G SQ N
Sbjct: 495 SSREHDGTGLGLAICKGLVERMHGEIGVVSAPEQGSTFWFTARL--GIDKRQPAPSQLAN 552
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+ + +L + +R + HI + V D L + + K +
Sbjct: 553 LSDYRILLCGENADSLKQLEKLLREWHANTHI------ISAVHDCFPILREARAQDKPFD 606
Query: 787 MILVEQEVWEKDTSVSTLFVNNL-RKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 845
++++ ++ + + L +NNL +L F L T + SI I
Sbjct: 607 LLVL--DIAPNERKIPPLLLNNLAEQLESEFNCTLVACCTPAHQRLFRTHAEQSSI-LFI 663
Query: 846 MKPLRSSMLAASLQRAMGVGNKGN----IRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
KP+ L +L R + + K N + + PS ++L+VDDN NL++
Sbjct: 664 NKPIAYDALLQTLGRQLDIHIKENRDQDQEDAQRPSA---------RVLLVDDNPANLQL 714
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
A+ L+ V+ G A E +FD FMDIQMP MDG E
Sbjct: 715 ASELLRGLNTEVITANNGPLAIEACQ-TDEFDVIFMDIQMPGMDGIE 760
>gi|110597007|ref|ZP_01385296.1| PAS:Response regulator receiver:GAF:ATP-binding region,
ATPase-like:Histidine kinase A-like [Chlorobium
ferrooxidans DSM 13031]
gi|110341198|gb|EAT59663.1| PAS:Response regulator receiver:GAF:ATP-binding region,
ATPase-like:Histidine kinase A-like [Chlorobium
ferrooxidans DSM 13031]
Length = 1407
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 170/543 (31%), Positives = 257/543 (47%), Gaps = 84/543 (15%)
Query: 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
++E + +E+A+ AKS+FLA +SHEIRTPMNGV+GM +L+DT L Q+ Y + S
Sbjct: 873 ALVEARYASESANRAKSEFLANMSHEIRTPMNGVIGMTGLLLDTSLSDEQRGYAQAVMES 932
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
L+ LIN++LD +K+E+GK ELE + F+LR +LDDV S+ + +++DK +E S
Sbjct: 933 ADFLLGLINDILDFSKIEAGKFELEMLDFDLRNVLDDVSSIMAVRARDKELEFICAASPE 992
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
V L GDPGR Q++ NL GN+IKFT +G + V+V LV S
Sbjct: 993 VTPFLRGDPGRLYQVLNNLAGNAIKFTHQGEVAVSVALV--------------------S 1032
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
G S+ DL+ SV DTG GIP + + +F+ F
Sbjct: 1033 G--------------------------SAQEDLLRF--SVRDTGIGIPEQKIAILFSSFT 1064
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF------GNGSS 715
QV S +R GGTG+GL+IS+ LV M GEIG S N GS F FT F GNG
Sbjct: 1065 QVDASTTRKFGGTGLGLAISRQLVELMGGEIGVSSRENEGSEFWFTIPFKKQLPKGNGGR 1124
Query: 716 TSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 775
S + G + L+VD V R G V +S Q +
Sbjct: 1125 YSKD---------------AIAGTRILIVDDNATNRTVLRRQFLSWGAVVTELSGGAQVV 1169
Query: 776 SQIASG---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 832
+++ + + L++ ++ + D + + + KL + ++ +S+ S +
Sbjct: 1170 AELKRAHESGEPYRLALIDMQMPDMDGATLCRSIKDDEKLA----PTVLVMMSSLGSKCS 1225
Query: 833 NTSTDGVSIPSVIMKPLRSSML---AASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR-- 887
+ + + KP+ S L A++ A ++ E P S GR
Sbjct: 1226 EEDLKRMGCSACLSKPILQSDLFDTFAAIIFADTEPGGSSMTAGESPKESQPQKKDGRGE 1285
Query: 888 --KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
++L+ +D ++N KV L + G + V G +A L +D MD+QMPEMD
Sbjct: 1286 GVRLLLAEDTSINQKVVIGILGKLGYHIDVVVNGAEAVRAL-ETTPYDLVIMDLQMPEMD 1344
Query: 946 GYE 948
G E
Sbjct: 1345 GLE 1347
>gi|359462985|ref|ZP_09251548.1| two-component hybrid sensor and regulator [Acaryochloris sp. CCMEE
5410]
Length = 1076
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 167/524 (31%), Positives = 266/524 (50%), Gaps = 60/524 (11%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K +A+AA KS+FLA +SHE+RTPMN V+GM +L T LD QQD+V T ++SG AL+
Sbjct: 541 KDRADAASQVKSEFLANMSHELRTPMNAVIGMTGLLTHTSLDAQQQDFVDTIRSSGDALL 600
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
LIN++LD +K+E+GKLE+E FNL++ +++ L L + ++ KG+E+A +P +
Sbjct: 601 CLINDILDFSKIEAGKLEVEEQPFNLKSCIEEALKLVAPRAFKKGLEIAYLADPDLPCGI 660
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R RQ++ NL+ N +KFT+ G + V V +V E+
Sbjct: 661 VGDVTRLRQVLVNLLTNGVKFTDNGEVIVYVK---------DVTAEMQ------------ 699
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
DR +G + Q SP + +V+DTG GIP + +R+F F QV S
Sbjct: 700 DR----EGLGSEGQ----SPRRL-------FQFAVKDTGIGIPEDRLNRLFQSFSQVDSS 744
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+ISK L M G+I S IGSTF+FT + +
Sbjct: 745 TTRKYGGTGLGLAISKRLCELMGGKIWVDSEIGIGSTFSFTIAAPIVDT---------FD 795
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
P + +G + L+VD K+ G+ + L ++ G +
Sbjct: 796 CAPIHDLAPLKGQRLLIVDDNLTNRKILTIFADIWGMHSQSAPSGPAAL-ELLRGRSSFD 854
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+ +V+ ++ E D ++ L+K ++ ++ +S+ +T D +++
Sbjct: 855 LAVVDMQMPEMDGLTLARRIHGLQK----YKDLPLVMLSSLGVEAISTPMDKSLFYAILN 910
Query: 847 KPLRSSMLAASLQRAMGVGNKGNIRNWEL----PSMSLRHLLLGRKILIVDDNNVNLKVA 902
KP++ + L+A L RA+ ++ N +N EL PS + + L +L+ +D VN KVA
Sbjct: 911 KPIQEAQLSAILVRAVTRQSE-NTQNSELDRPQPSTNSKTL----HLLLAEDVVVNQKVA 965
Query: 903 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
LK+ G GK+ E L +D MD+QMPEMDG
Sbjct: 966 LLILKQLGYEADVANNGKEVLEALH-RQPYDVVLMDLQMPEMDG 1008
>gi|359462140|ref|ZP_09250703.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris sp. CCMEE 5410]
Length = 826
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 159/526 (30%), Positives = 251/526 (47%), Gaps = 58/526 (11%)
Query: 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 480
+ E + A+AA++AKS+FLA +SHEIRTPMN V+GM D+L DT LD QQD+V T +
Sbjct: 294 QALQESSQAAQAANLAKSEFLAMISHEIRTPMNAVIGMTDLLKDTHLDPHQQDFVETIRT 353
Query: 481 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 540
SG++L+++IN++LD +K+ESGKLELE F L +++ L + + K+ KG+ELA I
Sbjct: 354 SGESLLNIINDILDFSKIESGKLELELHPFPLSTCIEEALDIVNSKATAKGLELAYLIEP 413
Query: 541 RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 600
P + GD R RQI+ NL+GN++KFT G + VT+ + + E L
Sbjct: 414 GTPNHIQGDANRLRQILVNLLGNAVKFTADGEVIVTISARDVATAEMTPEVPLF------ 467
Query: 601 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660
L L+ V+DTG GI E Q ++F F
Sbjct: 468 ---------------------------------LHELLFEVKDTGIGIAPEHQQKLFQSF 494
Query: 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 720
Q+ SI+R +GGTG+GL+ISK L M G I S IGS F FT + + +H
Sbjct: 495 CQLDSSITREYGGTGLGLAISKQLCELMGGTIWVESQVGIGSRFFFT-IAASALPGLEDH 553
Query: 721 NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 780
+ S+FQ + L+V+ ++ +Q G+ + S L+ L+ +
Sbjct: 554 ---------RATESQFQNKRVLIVEDNASTGQILCQQVQAWGLVPTLASSGLEALAWVKK 604
Query: 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
+ + ++ +S L N++ Q+ L ++ A
Sbjct: 605 ERFDVAIADLQLPTMTWSRLLSELTQNHI-------QAPLPIIGLCAIGESAAVWQYQPL 657
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
+ + + KP++ L +L +A+ ++ ++ + + +IL+ +DN +N K
Sbjct: 658 LSASLSKPVKQFRLYQTLLKALST-HQSDLTQPSISQPPPKPAPSSVRILVAEDNVINQK 716
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
V L R G V G + L +D MD+QMPEMDG
Sbjct: 717 VILKLLDRLGYQADLVTNGLEVLTALQ-EQSYDVVLMDVQMPEMDG 761
>gi|336309925|ref|ZP_08564898.1| sensory box histidine kinase/response regulator [Shewanella sp.
HN-41]
gi|335866485|gb|EGM71463.1| sensory box histidine kinase/response regulator [Shewanella sp.
HN-41]
Length = 1765
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 166/532 (31%), Positives = 259/532 (48%), Gaps = 87/532 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++A+AA AK FLA +SHEIRTPMN ++GM + + TELD Q++YV + + ++L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1089
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+GKL++E+V F L +L+D+ +FS K+ K +EL ++ VP L
Sbjct: 1090 SIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPNVPRHL 1149
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD R Q++ NLM N+IKFTE+G + +++ LVE+ D + + + SG +
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQQNDDVTLRFSVRD-----SGIGLT 1204
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D + K FK+F+Q DT S
Sbjct: 1205 DEQQA-KLFKSFSQ---------------------ADT---------------------S 1221
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I K LV M G IG S GSTF FT Q +
Sbjct: 1222 TTRKYGGTGLGLAICKQLVELMGGSIGVESQFGHGSTFYFTVKL------------QISS 1269
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
Q + E +GM LVVD + R ++ +G V+ V SG + +N
Sbjct: 1270 GQKLVIGQELEGMSVLVVDDNATARDIMRTTLEGMGFLVDTVR----------SGDEAVN 1319
Query: 787 MILVEQEVWEKDTSVSTL--FVNNLRKLGCGFQ-------SKLFLLANSISSSRANTSTD 837
++D +V+ + + NL L Q L+ ++ ++ T +
Sbjct: 1320 ------RCTQRDYAVALIDWKMPNLDGLDTARQILQQAKTPPRILMVSAHANQEFLTQIE 1373
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRKILIVDDNN 896
+ + I KP+ +S L + A+G +R E L L G++IL+V+DN
Sbjct: 1374 QLGLAGYISKPISASRLLDGIMNALGRAGILPVRRHNEALDPQLLLPLKGKRILLVEDNE 1433
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+NL+VA L++ G + G+ A + LM FD MD QMP MDGY+
Sbjct: 1434 MNLEVATEFLEQVGIILSIATNGQIALDKLM-QQSFDLVLMDCQMPVMDGYQ 1484
>gi|87308528|ref|ZP_01090668.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
gi|87288620|gb|EAQ80514.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
Length = 954
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 152/516 (29%), Positives = 245/516 (47%), Gaps = 70/516 (13%)
Query: 438 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497
S+FLA VSHEIRTPMN ++GM + + +L ++YV TA +S L+SL+N++LD +K
Sbjct: 312 SEFLANVSHEIRTPMNAIIGMTKLTLAEDLPEAVREYVETANSSAHTLLSLLNDILDFSK 371
Query: 498 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 557
+E+GK ++ FNLR +D + S ++ KG+E+A+ R+PE LIGD R RQII
Sbjct: 372 IEAGKFTIDRSEFNLRQTIDATMRALSERAFSKGLEVAIDYDPRIPEELIGDAIRLRQII 431
Query: 558 TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 617
TNL+ N++KFTE+G + ++V L+ + + +S +
Sbjct: 432 TNLVSNAVKFTERGEVLLSVKLLRRFPREVRIRFTISDT--------------------- 470
Query: 618 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 677
G GI Q RIF PF QV S +R GG+G+G
Sbjct: 471 ---------------------------GVGITPADQKRIFEPFTQVDSSSTRNFGGSGLG 503
Query: 678 LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 737
L+I L+ M G + S P +GS F+F +F + + S + EF
Sbjct: 504 LTICHELLELMGGRLELNSEPGVGSRFSFALLFPRTRTAESRLRSAIL-------PPEFA 556
Query: 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI---INMILVEQEV 794
GM+ LVVD K+ R ++ + SD + + + K+ +++L++ +
Sbjct: 557 GMQVLVVDDNETNRKILRELLRSWELDAFTTSDAEEAIRLFSEKQKVGDPFDLVLIDALM 616
Query: 795 WEKDTSVSTLFVNNLRKLG--CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS 852
D + ++LG G + L+A + + I S + KP+ +S
Sbjct: 617 PGIDG------YDLCKRLGEVAGKTPPIVLMAAPSDRHHFREREEDLPIRSTLAKPITAS 670
Query: 853 MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAA 912
L SL AM + + R+ + +S H L ++++V+D N K+ + LK+ G
Sbjct: 671 SLHDSLVEAMSIAAPESQRSRSVEVLSSFHAL---RVMLVEDTAANRKLVTSLLKKRGHI 727
Query: 913 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VV G++A E +FD MD+QMP MDG +
Sbjct: 728 VVEAHNGREALEKFR-DDEFDVILMDVQMPIMDGLQ 762
>gi|288940175|ref|YP_003442415.1| integral membrane sensor hybrid histidine kinase [Allochromatium
vinosum DSM 180]
gi|288895547|gb|ADC61383.1| integral membrane sensor hybrid histidine kinase [Allochromatium
vinosum DSM 180]
Length = 778
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 170/565 (30%), Positives = 262/565 (46%), Gaps = 91/565 (16%)
Query: 392 SIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTP 451
SIG +A+L F A + RI + + + + E + AE A+ AKS FLA +SHEIRTP
Sbjct: 229 SIGTDELATLT-RAFDAMLERIEQRDAE---LREARDAAERANRAKSHFLANMSHEIRTP 284
Query: 452 MNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFN 511
MNG++GM ++L +T+L+ Q+D R Q S AL+ +IN++LD +++E+G+LELE + F+
Sbjct: 285 MNGIIGMTELLQETDLNAAQRDCTRVIQDSAAALMRIINDILDMSRIEAGRLELERLDFD 344
Query: 512 LRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG 571
R ++ L +Q KG+E A+ + +P L GDPGR RQI+TNL+ N+IKFTE+G
Sbjct: 345 PRESIERTLEPLREIAQRKGLEFAIELDPELPARLRGDPGRLRQILTNLVSNAIKFTEQG 404
Query: 572 HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 631
+ VT+ +E R W
Sbjct: 405 RVSVTLDCLE--------------------------RTDDW------------------- 419
Query: 632 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGE 691
+ +++V DTG G+ E SR+F F Q S R +GGTG+GL+IS+ LV M G
Sbjct: 420 ---VRFVIAVRDTGIGLSTEECSRLFERFSQADVSTRRRYGGTGLGLAISRQLVELMGGG 476
Query: 692 IGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRA 751
I S P +GS F V + S P +V G++ LV+ P A
Sbjct: 477 IDVESKPGLGSVFRVELVLESSES-------------PPAVDRRLAGLQTLVLVQEPSLA 523
Query: 752 KVSRYHIQRLGIQVE----VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVN 807
++ LG+ VE + + L++ A G + +++L+E E TS + ++
Sbjct: 524 AQLGGMLEDLGMSVEHQTSLAAAIESALTRAARG-QTFDVLLLEHEQLPAPTSPAGSLLH 582
Query: 808 NLRKLGCGFQSKLFLLANSISSSRANTSTDGV--SIPSVIMKPLRSSML--AASLQRAMG 863
+ S L + + D V +P + + P + +++ R+ G
Sbjct: 583 EM--------SARALAVLRLRARGGAAGDDPVWGRLPEIGLPPTHVELQNGLSAIIRSRG 634
Query: 864 VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKAT 923
G G + PS+ LR +L+ +DN N +V L V G+
Sbjct: 635 AGGHGEGAK-QRPSLGLR-------VLVAEDNPANQRVIEWMLTALDCEVELHPNGRSLL 686
Query: 924 ELLMPPHQFDACFMDIQMPEMDGYE 948
E D MD QMP MDGYE
Sbjct: 687 ESFT-ARPADLVLMDCQMPVMDGYE 710
>gi|99078583|ref|YP_611841.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
gi|99035721|gb|ABF62579.1| two-component hybrid sensor and regulator [Ruegeria sp. TM1040]
Length = 770
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 160/539 (29%), Positives = 263/539 (48%), Gaps = 71/539 (13%)
Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
A+ +E + +++AE A AKS+FLA +SHEIRTPMNGV+GM ++L +TEL Q+
Sbjct: 225 AERDEREKALEHAREQAEIASRAKSEFLANMSHEIRTPMNGVIGMAEVLRETELTPDQEL 284
Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
Y T SG AL+S+IN++L +K+E+GKLEL +FNLR +++DV+ L + K+ +K V+
Sbjct: 285 YTETIVKSGNALLSIINDILSFSKIEAGKLELTQATFNLRTVIEDVIMLLAPKAAEKWVQ 344
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
L + + E GD GR RQI+TN++GN++KFT +G + + V V
Sbjct: 345 LTLRYDPDLAEFYDGDAGRIRQIVTNVVGNAVKFTSRGSVHIDVTGV------------- 391
Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
+ L++L +SV DTG GIP E
Sbjct: 392 ------------------------------------ARGQLMDLRISVVDTGIGIPAEKL 415
Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
RIF F QV + +R GTG+GL+IS L+ MKG I S GS FT
Sbjct: 416 DRIFHAFEQVDGAATRNFEGTGLGLAISTRLLQMMKGRIHVTSSEGKGSVFTIDISL--- 472
Query: 714 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
TS+ + QP S G+ AL+VD + ++ ++ G++V + ++
Sbjct: 473 -PTSDRAPVAFLPEQPVS------GLHALIVDDLELNRRILGERLRSWGLRVTEAASAME 525
Query: 774 C---LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
L ++ + ++I ++ + + D L + L S ++ +S+ +
Sbjct: 526 AMLHLDEMRDATDTCDLIFLDYNMPDCDGYELALRIRGLPNTA----SVPIIVISSVDPA 581
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR-KI 889
+ + + + ++KP+R+ L + +A+G G+ R PS S ++ R K+
Sbjct: 582 LSQSMLADIEVCHQVLKPVRADDLRGVISQALGAGSAVEERA---PSGSEDAKIMQRIKV 638
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L+ +DN N V LK ++ G++A E+ + + D MD+ MP MDG +
Sbjct: 639 LMAEDNRTNQVVVTRMLKSESVDIIIASNGQEAIEMYL-RERPDVILMDMMMPVMDGLD 696
>gi|428210022|ref|YP_007094375.1| multi-sensor hybrid histidine kinase [Chroococcidiopsis thermalis
PCC 7203]
gi|428011943|gb|AFY90506.1| multi-sensor hybrid histidine kinase [Chroococcidiopsis thermalis
PCC 7203]
Length = 1053
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 163/528 (30%), Positives = 258/528 (48%), Gaps = 50/528 (9%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+ AEAA+ AKS FLA +SHEIRTPMNGV+GM +L++T L QQD+V T + SG AL+
Sbjct: 322 RNTAEAANQAKSAFLANMSHEIRTPMNGVIGMTGLLLNTSLTPQQQDFVDTIRRSGDALL 381
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+ES KL+LE F+LR +++ L + + ++ DK +ELA + + P T+
Sbjct: 382 TIINDILDFSKIESDKLDLEEQPFDLRVCIENSLDVLAPQAADKNLELAYLLDPQTPATI 441
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R QI+ NL+ N++KFTE G + V+V E++SS+ L G
Sbjct: 442 MGDVTRLCQILVNLLSNAVKFTEHGEVVVSV-----------TTKEINSSE-YLEG---- 485
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ Q T+ + + + +V+DTG GIP + R+F F QV S
Sbjct: 486 ---------RKKEQLPQTADYLMPT--FYEIQFAVKDTGIGIPSDRMDRLFKSFSQVDTS 534
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+IS+ L M G + S +GSTF FT + +E
Sbjct: 535 TTRQYGGTGLGLAISQRLSVMMGGRMWVESQVGVGSTFYFTIAVAAPNIVQHES------ 588
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+ + + G + L+VD K+ Q G+ + + L + G
Sbjct: 589 ---SCILPQLHGKRLLIVDDSATNRKILMLQAQSWGMLPRAATSGAEALEWLQRGDPFDL 645
Query: 787 MILVEQEVWEKDTSVSTLF--VNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
+L Q S++T +N RKL ++ S+ + + V + +
Sbjct: 646 AVLDMQMPQMDGLSLATTIHQHSNYRKLP-------LVILTSMGKPEVASQSTAVKLSAC 698
Query: 845 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR----KILIVDDNNVNLK 900
+ KP++ S L L + + ++ + LP S + + IL+ +DN VN K
Sbjct: 699 LTKPVKQSQLYNVLLQILSEQSQPSQVAPFLPKSSTLSAQIAQTHPLNILLAEDNTVNQK 758
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VA L++ G G + L +D MD+QMPEMDG E
Sbjct: 759 VALLMLQQMGYRADVANNGLEVLAALQ-RQPYDVVLMDVQMPEMDGLE 805
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
L G+++LIVDD+ N K+ + +G G +A E L FD +D+QMP+
Sbjct: 595 LHGKRLLIVDDSATNRKILMLQAQSWGMLPRAATSGAEALEWLQRGDPFDLAVLDMQMPQ 654
Query: 944 MDGYEM 949
MDG +
Sbjct: 655 MDGLSL 660
>gi|325110166|ref|YP_004271234.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
5305]
gi|324970434|gb|ADY61212.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
5305]
Length = 1273
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 170/529 (32%), Positives = 257/529 (48%), Gaps = 74/529 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AEAA+ AKS FLAT+SHEIRTP+NGV+GMLD+L +T+ D Q YV A+ S ++L+
Sbjct: 599 KEMAEAANKAKSSFLATMSHEIRTPLNGVIGMLDLLCETDTDQQQGRYVSIAKNSAESLL 658
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
LIN++LD +K+E+GKLEL FNL +++DV +F+ ++ KG+EL+ +I V +
Sbjct: 659 CLINDILDFSKIEAGKLELSPSEFNLPTLVEDVSDMFAHRAASKGLELSCHILPEVASRV 718
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R RQI+ NL+GN+IKFTE G I + V +S+++
Sbjct: 719 LGDSERLRQILINLIGNAIKFTEVGEIRINVA--------------ATSTRDH------- 757
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
W F+ V+DTG GIP + Q R+F PF Q S
Sbjct: 758 ---EQWVRFE------------------------VQDTGVGIPEDIQQRLFQPFEQADAS 790
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R GGTG+GL+I + L M G+I S G+TF+ F Q +
Sbjct: 791 TTRKFGGTGLGLAICRELAILMGGKITVDSQLGSGATFSLEIPF-------EVIKRQALG 843
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSK 783
Q + F+G++ L VD + + I G +V VS + LQ L A +
Sbjct: 844 RQ---IDERFRGVRILAVDDVETNRVILQTQIATWGAEVVTVSSANEALQELQTAAREER 900
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
+ + + + E D + V+N L ++ LL +S R +G+ S
Sbjct: 901 PFEICITDYNMPEMDGLQLSRSVSNDPDLK---DTRFLLLTSSDGIERRQLEENGIHACS 957
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL--LGR---KILIVDDNNVN 898
KP+R S L L + N +EL + ++ L +G +IL+ +DN +N
Sbjct: 958 C--KPIRPSRLFNELLALL--FNNPPEEEFELDAHAVSEELGMVGNDAYRILVTEDNEIN 1013
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
V ++R G G++A +LL +FD MD QMP DG+
Sbjct: 1014 QIVTQEIIERAGFQCRLANNGQEAIDLL-KKRKFDLVLMDCQMPVKDGF 1061
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
Query: 874 ELPSMSLRHLLLGR---------KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATE 924
E+P ++ LGR +IL VDD N + + +GA VV V +A +
Sbjct: 831 EIPFEVIKRQALGRQIDERFRGVRILAVDDVETNRVILQTQIATWGAEVVTVSSANEALQ 890
Query: 925 LLMPPHQ----FDACFMDIQMPEMDGYEM 949
L + F+ C D MPEMDG ++
Sbjct: 891 ELQTAAREERPFEICITDYNMPEMDGLQL 919
>gi|288942322|ref|YP_003444562.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
gi|288897694|gb|ADC63530.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
Length = 1320
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 166/532 (31%), Positives = 255/532 (47%), Gaps = 77/532 (14%)
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
+AEA+ AKSQFLA +SHEIRTPMNGV+G+ +L+DT+LD Q+ + SG+ L++L
Sbjct: 656 QAEASTQAKSQFLANMSHEIRTPMNGVIGITGLLLDTDLDPEQRRLAEIVRDSGENLLAL 715
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
IN++LD +K+E+GKLELE + F+LR ++++VL + + + +K +EL I+ +VP + G
Sbjct: 716 INDILDFSKIEAGKLELEHLEFDLRLLIEEVLEMMAFNAHEKDLELTYRIAPQVPTAVRG 775
Query: 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
DP RQ+I NLMGN+IKFTE+G + + + L +R
Sbjct: 776 DPRYLRQVIVNLMGNAIKFTERGEVGLQLAL---------------------------ER 808
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
+ + F V D+G GIP + ++FT F QV S +
Sbjct: 809 AEAGRALIRFE---------------------VHDSGIGIPEDQLGKLFTAFNQVDSSTT 847
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 728
R GGTG+GL I+K L M G+IG S P GS F FTA F T+ E+ + +
Sbjct: 848 RRFGGTGLGLVIAKQLAQLMNGDIGLESRPGQGSRFWFTAEFECSPQTATEYRVCERDID 907
Query: 729 PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV---VSDQLQCLSQIASGSKII 785
V + RA+ + ++ G QV V D L+ L Q
Sbjct: 908 DVRVLVVDDHLDN--------RAQAASL-LRAWGCQVAVAGRAGDALRALHQAVRAGAPF 958
Query: 786 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 845
++ L++ + + + L + L K + +L +++ + +
Sbjct: 959 DVALIDLRMPDPN----GLQLARLIKQEPEIRDTRLVLLTALAKREDYAYLESGDFAGYV 1014
Query: 846 MKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR------KILIVDDNNVNL 899
KPLR ++ L R MG + + P R +GR ++L+VDDN N
Sbjct: 1015 TKPLRHHLVRDCLLRVMGR-ERPVLEPVSPPVGPDRIPGIGRPAHPEARLLLVDDNPTNQ 1073
Query: 900 KVAAAGLKRYG---AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VA L++ G + C G +A E L ++D MD QMPEMDG+E
Sbjct: 1074 IVARGILEKLGYPKPDIAC--NGLEALEALSRA-RYDLVLMDGQMPEMDGFE 1122
>gi|428316381|ref|YP_007114263.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428240061|gb|AFZ05847.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 2009
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 170/549 (30%), Positives = 266/549 (48%), Gaps = 75/549 (13%)
Query: 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
+ + +++AEAA AKS+FLA +SHEIRTPMN V+GM +L+DTEL Q+D++ T + S
Sbjct: 1314 ALEQTRQEAEAASRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELKAQQRDFIETIRNS 1373
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
G L+S+IN++LD +K+ESGKLELE +LR ++ + + K+ +K +EL I
Sbjct: 1374 GDTLLSIINDILDFSKIESGKLELEKHPLSLRDCIEGAIDQLAVKADEKEIELGYLIHPL 1433
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
P ++GD R RQI+ NL+ N+IKFTE G VT+ + VDS
Sbjct: 1434 TPNFILGDVTRLRQILVNLLNNAIKFTETGE--VTISVQASAVDS--------------- 1476
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
KT ++ G+ L + +++DTG GIP R+F F
Sbjct: 1477 -------------DKTISEPGNL------PESLYEIQFAIQDTGIGIPANRLDRLFKSFS 1517
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEI-----GFV-SIPN------------IGST 703
QV S +R +GGTG+GL+ISK L M G + G+V P+ +GST
Sbjct: 1518 QVDASTTRQYGGTGLGLAISKRLSEMMNGMMWVESSGYVGGTPSPKWQPAKPHRVAMGST 1577
Query: 704 FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 763
F FT V SS + E ++P + E G + L+VD +P ++ + G+
Sbjct: 1578 FYFTIV---ASSVATEL------SEPMEMLPELSGKRLLIVDDQPTNRQILTLQAETWGM 1628
Query: 764 QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 823
Q ++ L+ + SG + ++ +++ ++ + D ++ K C +L
Sbjct: 1629 QSLAAPSAVEALNWLDSG-ETFDIAILDMQMPQMDGLTLASAIHQHPK--C--HRLPLVL 1683
Query: 824 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL 883
S+ A +S + + KP++ S L L + K +LP +
Sbjct: 1684 LTSMGYPEAGSSALSTHFAACLSKPIKQSQLYQILIHVLQAQPKK--VQQQLPRSVEDDM 1741
Query: 884 LLGR----KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939
L + +IL+ +D+ VN KVA L+R G G + E L +D MD+
Sbjct: 1742 KLAQRLPLRILLAEDHLVNQKVALLLLERLGYRADIAANGLEVLEAL-NRQPYDVVLMDV 1800
Query: 940 QMPEMDGYE 948
QMPEMDG E
Sbjct: 1801 QMPEMDGLE 1809
>gi|392373817|ref|YP_003205650.1| Sensor protein [Candidatus Methylomirabilis oxyfera]
gi|258591510|emb|CBE67811.1| putative Sensor protein [Candidatus Methylomirabilis oxyfera]
Length = 1049
Score = 223 bits (567), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 160/539 (29%), Positives = 267/539 (49%), Gaps = 68/539 (12%)
Query: 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
M + K AEAA AK +FLA +SHEIRTP+N ++GM ++ +DT L Q+++++ Q+S
Sbjct: 505 AMQQAKSVAEAASRAKGEFLAKMSHEIRTPLNAIIGMTELTLDTALTTEQREFLQVVQSS 564
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
+AL+++IN++LD +++E+G++ +E +F+LR +++ V + S ++Q KG+EL Y+
Sbjct: 565 SEALLTVINDILDLSRIEAGQMAIEETAFHLREVVEGVAEVLSIRAQKKGLELTCYVDPA 624
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P ++GDP R RQ++ NL+GN+IKFTE+G + + V+ +VE
Sbjct: 625 LPSRVLGDPMRLRQVLVNLVGNAIKFTERGEVTIQ-------VERTQVE----------- 666
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+P + I + +SV DTG GIP Q+RIF PF
Sbjct: 667 -----------------------APGR------IGVHISVADTGIGIPTHQQARIFDPFA 697
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q + +R GG+G+GLSISK L+ M G I S GSTF V T E
Sbjct: 698 QADATTARRFGGSGLGLSISKALMELMGGRIWVESEVGKGSTFHCDLVV-----TVAEPE 752
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
++ + + +G+ LVVD P + R + G+ VE + + L+ + +
Sbjct: 753 AETVRAG-RETYPDLRGVAVLVVDDNPTNRLILRRTLHTWGMTVEEAAGGEEALALLRTS 811
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
+++++ + + D + + +L KL +L++ A G+++
Sbjct: 812 HAGYQIVILDHHMPDMDGAAVARAIRQDPRLQ---DIKLVMLSSWEGLPTATREDLGITV 868
Query: 842 PSVIMKPLRSS----MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
V+ KP++ S ML L+RA +P R L R IL+V+DN
Sbjct: 869 --VLTKPVKQSKLLDMLMGLLRRAE---EAEAPAEPSIPEA--RRPTLQRHILLVEDNVD 921
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF 956
N + L++ G VV + A + ++D MD+QMPEMDG+E S+
Sbjct: 922 NQNLVRRILEKVGYWVV-IAGNGAAAVNAVRQARYDLILMDVQMPEMDGFEATRAIRSW 979
>gi|386020082|ref|YP_005938106.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri DSM
4166]
gi|327480054|gb|AEA83364.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri DSM
4166]
Length = 914
Score = 222 bits (566), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 175/585 (29%), Positives = 279/585 (47%), Gaps = 103/585 (17%)
Query: 386 LLAISTSIGILVIASLVGHIFQATV------------NRIAKVEEDYHGMMELKKKAEAA 433
+L + S+GI ++ + +A+V +RI ++E+ + E ++A +
Sbjct: 346 ILVTAGSLGIELLGLYGAAVVKASVAFELITLSIGLADRINLLKEEGYRSREAAERAASE 405
Query: 434 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVL 493
+ AKS+FLA +SHEIRTP+NGVLGML +L +T LD +QQ Y+ T +SG +L+++IN++L
Sbjct: 406 NEAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPLDRSQQFYLDTISSSGNSLMAVINDIL 465
Query: 494 DQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRF 553
D A++ SGKL LE + F+L ++ + + LF+ ++ +K + L V + VP + GDP R
Sbjct: 466 DYARIGSGKLSLEDIDFDLEILISETIRLFTAQALEKQLSLHVGLEPGVPRRIRGDPTRL 525
Query: 554 RQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK 613
+QI+ NL+ N++KFTE GH+ + V SS+ T
Sbjct: 526 KQILMNLLSNALKFTEHGHVLLEV-----------------SSRQT-------------- 554
Query: 614 GFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673
QDGS L+ V D+G G+ E +++F F Q S +R +GG
Sbjct: 555 ------QDGSR-----------RLVFCVSDSGIGMRQEVLAQLFESFSQGDSSTTRRYGG 597
Query: 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVS 733
+G+GL+ISK LV M G I S P GS F F S + N Q + +P ++
Sbjct: 598 SGLGLAISKELVEMMNGHIEVQSAPGRGSRFCFEIPLHAASDVEDPLN-QLLAGRPALLA 656
Query: 734 SE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ---CLSQIASGSKIINMIL 789
S+ QG++AL + ++R G++ E D + CL+ + +L
Sbjct: 657 SQDAQGLEAL------------SHLLRRWGMRTERCQDPERLPDCLADFTAPP-----LL 699
Query: 790 VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMK-- 847
V W S L +L +S +L T G+ + S+ +
Sbjct: 700 VLLAPWPGSPS------QWLERLRPHLESNQRVLMLYSPIHEPPPVTPGLRLVSLALPLQ 753
Query: 848 --PLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK-ILIVDDNNVNLKVAAA 904
PLR ++ Q G +G+ PS + G IL+ +DN VN V
Sbjct: 754 SAPLREALQMLYAQEPATAGERGS------PSPAQPQ---GEPCILVAEDNPVNQMVVRG 804
Query: 905 GLKRYGAAVVCVERGKKATELL-MPPHQFDACFMDIQMPEMDGYE 948
LK+ G AV + G++A +L PH MD +MPE+DG+E
Sbjct: 805 LLKKRGYAVQLADNGRQAVDLYRRDPHAVQLILMDCEMPELDGFE 849
>gi|392542571|ref|ZP_10289708.1| sensor protein [Pseudoalteromonas piscicida JCM 20779]
Length = 1103
Score = 222 bits (566), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 186/580 (32%), Positives = 270/580 (46%), Gaps = 117/580 (20%)
Query: 407 QATVNRIAKVEEDYHGMMELKKK-------AEAADVAKSQFLATVSHEIRTPMNGVLGML 459
Q + +++D +E KK+ AE AKS+FLA++SHEIRTPMNGV+GML
Sbjct: 526 QNQLTAFVGIQQDITAAVEAKKELEQAKQAAEQGAQAKSEFLASMSHEIRTPMNGVIGML 585
Query: 460 DMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 519
+L D L TQ V A S K+L++LIN++LD +K+E+GKLELE++ F++RA+L ++
Sbjct: 586 SLLEDEHLTQTQLHKVSLAMGSAKSLLNLINDILDFSKIEAGKLELESLDFDVRALLGEL 645
Query: 520 LSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL 579
+ + ++Q KG+EL + ++ + GDP R RQIITNL+ N+IKFTE+G I + +
Sbjct: 646 VESVALQAQKKGLELILDVTQLEKPLVQGDPSRIRQIITNLISNAIKFTEQGEIIIRAWF 705
Query: 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIV 639
EV+ +L R H
Sbjct: 706 S-------EVDNKL--------------RFH----------------------------C 716
Query: 640 SVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699
SVEDTG GIP + R+F F QV S +R +GGTG+GL+I + L M G+I S
Sbjct: 717 SVEDTGIGIPEDKADRLFAKFSQVDASTTRKYGGTGLGLAIVRQLCELMDGDITVSSRFG 776
Query: 700 IGSTFTF--TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 757
GS F F T + GN N Q + + QG+K L+VD
Sbjct: 777 HGSQFEFFVTLIHGN-------------NTQFEAAKIDLQGIKILLVDDNLSALTSLESQ 823
Query: 758 IQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNL-------R 810
++ G V S +Q LS L E E +++D +V + + ++
Sbjct: 824 LRHWGANVYKASSGIQALS------------LCEAE-YQRDKNVFDIALLDMTLRGMSGE 870
Query: 811 KLGCGFQS-KLFLLANSISSSRANTSTDGV-----SIPSVIMKPLRSSMLAASLQRAMGV 864
+LG ++ K F I ++ T DG KP+ + L +L +
Sbjct: 871 QLGAALKNDKRFKAIKLIMMTQMGTKGDGQFYAERGYSGYFPKPVTTKDLFDALTI---L 927
Query: 865 GNKGNIRNWELPSMSLRHLLLGRK-------------ILIVDDNNVNLKVAAAGLKRYGA 911
G P ++ +L L RK IL+V+DN VN VA + LK+ G
Sbjct: 928 AEDGKALANAKPLVTSHYLKLVRKATETEFTWPKPCRILLVEDNKVNQVVALSMLKKLGI 987
Query: 912 AVVCV-ERGKKATELLMPPH---QFDACFMDIQMPEMDGY 947
+ V E G A ELL QF+ MD QMPEMDGY
Sbjct: 988 THIEVAENGLLAIELLKSHQDECQFELILMDCQMPEMDGY 1027
>gi|189501026|ref|YP_001960496.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
BS1]
gi|189496467|gb|ACE05015.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
BS1]
Length = 993
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 164/539 (30%), Positives = 252/539 (46%), Gaps = 80/539 (14%)
Query: 426 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 485
+ +A+AA+ AKS+FLA +SHEIRTPMNGV+GM ++L+ + LD Q+ + T ASGK L
Sbjct: 326 MASEADAANKAKSEFLANMSHEIRTPMNGVIGMSELLLRSTLDKEQKKFAETINASGKNL 385
Query: 486 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 545
+ L+N++LD +K+E+ KLE+E + FNL +LD+++++FS K+ KG+ + +P
Sbjct: 386 LHLLNDILDFSKIEADKLEIEEIDFNLLDLLDEIINMFSYKAGKKGLNFTFLPDEDIPLL 445
Query: 546 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 605
L GDPGR +QI+ NL+ N+IKFT++G I V V L E+ D+ +
Sbjct: 446 LRGDPGRIKQILVNLISNAIKFTDEGEILVNVELEEDFGDNARIR--------------- 490
Query: 606 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665
+V DTG GI IF PF+Q
Sbjct: 491 ---------------------------------FTVSDTGIGIDESRMDAIFEPFVQADG 517
Query: 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 725
S R +GGTG+GLSIS L M G I S P+ GS F F+ F +H Q
Sbjct: 518 STIRKYGGTGLGLSISNKLARNMGGRIQVRSTPSQGSMFYFSIDF-----IKQQHPDQIY 572
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGS 782
+ +S G L+++P K+ + E SD ++ L + A
Sbjct: 573 AD----ISIPLTGFNVLLIEPCQASRKLIKIFFSLWNSCFEEASDWESGVKKLQKAAESG 628
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
+ +++L+ +D +L + + ++ + + A+ D + P
Sbjct: 629 VLPDIVLIALPEERRDEVFEKFRTGDLLE-------NVIVIGLTSAGRGADFQPDPLGKP 681
Query: 843 SVIM-KPLRSSML---AASLQRAMG----VGNKGNIRNWELPSMSLRHLLLGRKILIVDD 894
+ KP+R L A L + G + K I + RH +IL+V+D
Sbjct: 682 DACLEKPIRGKELYACVADLLKRRGSTPELLEKNKIPVHSVTEKERRHF----RILLVED 737
Query: 895 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCF 953
+ VN V + L++ G V+ G +A L H +D MD QMPEMDGYE C
Sbjct: 738 SEVNQLVLLSMLQKEGYEADVVQNGTEALVALAKVH-YDLVLMDCQMPEMDGYEATRCI 795
>gi|345877533|ref|ZP_08829277.1| glycine cleavage system transcriptional repressor [endosymbiont of
Riftia pachyptila (vent Ph05)]
gi|344225426|gb|EGV51785.1| glycine cleavage system transcriptional repressor [endosymbiont of
Riftia pachyptila (vent Ph05)]
Length = 952
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 164/556 (29%), Positives = 263/556 (47%), Gaps = 101/556 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AE A++AK++FLAT+SHEIRTP+NG+L +L+ML +T+L Q+ +V TA S + L+
Sbjct: 248 KEAAETANMAKTEFLATMSHEIRTPLNGILPILEMLRETKLSAEQRQFVMTALNSTQLLL 307
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +KVE+GKLELE + N+R +++ V SL + + +G++L ++ VP +
Sbjct: 308 SIINDILDFSKVEAGKLELEFIELNVRELVEQVTSLMTNAADRRGLKLKHKVAPEVPRSA 367
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R RQI+TNL+ N++KFTEKG I V + L
Sbjct: 368 RGDPIRLRQILTNLVSNAVKFTEKGGISVEISL--------------------------- 400
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ +S + L+ +V DTG G+ + +R+F PF Q S
Sbjct: 401 ---------------------RHASRTEVELLFAVRDTGIGMSEKHVNRLFRPFSQADAS 439
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R HGGTG+GL+I K L M G IG S+ GS F F + +
Sbjct: 440 TTRKHGGTGLGLAICKRLTELMGGRIGVKSVRGKGSLFWFVVPL-----------RKSLE 488
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
P S + QG++AL++ +H+ G+ VE D L+++ + + +
Sbjct: 489 EVP-SARRDLQGVRALILGGDAEETDQIAHHMLDWGMVVEQSGDHYDALNKLKASATLGE 547
Query: 787 MILVEQEVWEKDTSVSTL--FVNNLRKLG--CGFQSKLFLLANSISSSRANTSTDGVSIP 842
+ E V + V + + ++R L G + FL+ + + GV
Sbjct: 548 SWMYELVVIDVRGLVPNVIQLIEDIRALPHMSGVE---FLILSGDGAEVKKLKKMGV--- 601
Query: 843 SVIMKPLRSSMLAASLQRAM----GVGNKGNIRNWELPSM-------------------- 878
V++ P R + ++R G G ++ + +P M
Sbjct: 602 DVLLAPFRRIEIERRVKRIFDVQEGYGGSHSLPDDLIPRMPDETFTWDDNQAAKNILSRN 661
Query: 879 ------SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF 932
+++H L +L+V+DN VN+ V L+R G V G +A +++ F
Sbjct: 662 KDGEKQTVQHTPLVGHVLVVEDNPVNMAVVKKMLQRAGLTPVTAMDGAEALKMV-GEENF 720
Query: 933 DACFMDIQMPEMDGYE 948
D MD QMP MDGYE
Sbjct: 721 DVVLMDCQMPRMDGYE 736
>gi|307132370|ref|YP_003884386.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Dickeya dadantii 3937]
gi|306529899|gb|ADM99829.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Dickeya dadantii 3937]
Length = 921
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 168/525 (32%), Positives = 250/525 (47%), Gaps = 77/525 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T+L TQ+DY++T + S L+
Sbjct: 280 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTQLTSTQKDYLQTIERSANNLL 339
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE + F+L LD+V+ L + + +KG+EL + I VPE
Sbjct: 340 NIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQF 399
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R +QIITNL+GN+IKFTE+G+I I +E S L
Sbjct: 400 VGDPLRLQQIITNLLGNAIKFTEQGNI------------DIRIEKRRQESLQVL------ 441
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
L + ++DTG GI Q+++F F Q S
Sbjct: 442 ------------------------------LEIQIKDTGIGIAEAQQTQLFQAFRQADTS 471
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN G+TF T Q+N
Sbjct: 472 ISRQHGGTGLGLVITQRLVREMGGDISFHSKPNQGTTFWCTVNL-------------QLN 518
Query: 727 N---QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 783
+P+ QG V+ P A+ + + + V S L+ L + +
Sbjct: 519 PHVLEPDYHFDRLQGKHLAYVEANPAAAQATLDILVHTPLTVS-YSPTLEQLPE-----R 572
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
+++L+ + ++T + F +R C S + L S++ A I +
Sbjct: 573 TFDILLIGVPIHYRNTLLD--FTPLIRDF-CRLASCVILALPSMAEMEAE-QLKSFGIHA 628
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
+ KP+ + L A LQ N P+ L L L ++ VDDN NLK+
Sbjct: 629 SLSKPITAPRLLAMLQDNSLFSQDSNELALPPPATLLSRLPLS--VMAVDDNPANLKLIG 686
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
A L+ ++ E G A H D MDIQMP MDG +
Sbjct: 687 ALLEEQVENIILCESGADAIARAQGTH-LDIILMDIQMPGMDGLQ 730
>gi|406830748|ref|ZP_11090342.1| PAS sensor protein [Schlesneria paludicola DSM 18645]
Length = 1117
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 165/521 (31%), Positives = 264/521 (50%), Gaps = 74/521 (14%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
AKS FLA +SHEIRTP+N ++GM +++ DT+L+ TQ++Y+ Q SG++L+S+IN++LD
Sbjct: 460 AKSDFLANMSHEIRTPLNAIIGMTELVRDTDLNTTQREYLAMVQESGESLLSVINDILDF 519
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+E+GKL LE VSFNLR +L D + + ++ K +ELA +++ VP + GDP R RQ
Sbjct: 520 SKIEAGKLSLERVSFNLREMLGDTMKSLALRAHRKRLELACHVAHGVPAAVEGDPHRLRQ 579
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
I+ NL+GN+IKFTE+G EVV +E E
Sbjct: 580 IVVNLVGNAIKFTERG----------EVVLDVEAEY------------------------ 605
Query: 616 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
+S D + L V DTG GI + IF F Q S +R +GGTG
Sbjct: 606 --------------TSGDELILHFRVTDTGIGISADQLHTIFEAFEQADTSTTRRYGGTG 651
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735
+GL+IS LV M+G I S N GSTF F A F S +S E +++ P
Sbjct: 652 LGLAISSRLVELMQGRIWVESELNCGSTFHFLAKF---SMSSPEAEARESTIYP----PM 704
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLG------IQVEVVSDQLQCLSQIASGSKIINMIL 789
G++ L+VD A R I+ L + V V+D + L +++ + M+L
Sbjct: 705 LHGLRVLIVDD---NATNRRILIEILTNWQMNPVAVSCVTDAISELRTMSTDGQPYAMVL 761
Query: 790 VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG-VSIPSVIMKP 848
+ + + D + + +S + +L + + S G + + + ++KP
Sbjct: 762 TDANMPDVD---GFELARQIHENPILCRSMVMMLTS--GDRPGDISRCGQLGVSAYLVKP 816
Query: 849 LRSSMLAASLQRAMGVGNKGNIRNWELPSM-SLRHLLLGRKILIVDDNNVNLKVAAAGLK 907
++ S L ++ + VG + ++ S+ S R + +L+ +D+ +N K+A L+
Sbjct: 817 IKQSELLDAI--LVAVGGQSSLTGCLDKSLSSARKATQSKSVLLAEDSLINQKLAIGLLE 874
Query: 908 RYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
++G V G++A L + FD MD+QMPEMDG +
Sbjct: 875 KWGHRVTVANDGQEAVN-LSGQYIFDLALMDVQMPEMDGLD 914
>gi|345865150|ref|ZP_08817341.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent
Tica)]
gi|345123737|gb|EGW53626.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent
Tica)]
Length = 938
Score = 222 bits (566), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 164/556 (29%), Positives = 263/556 (47%), Gaps = 101/556 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AE A++AK++FLAT+SHEIRTP+NG+L +L+ML +T+L Q+ +V TA S + L+
Sbjct: 234 KEAAETANMAKTEFLATMSHEIRTPLNGILPILEMLRETKLSAEQRQFVMTALNSTQLLL 293
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +KVE+GKLELE + N+R +++ V SL + + +G++L ++ VP +
Sbjct: 294 SIINDILDFSKVEAGKLELEFIELNVRELVEQVTSLMTNAADRRGLKLKHKVAPEVPRSA 353
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R RQI+TNL+ N++KFTEKG I V + L
Sbjct: 354 RGDPIRLRQILTNLVSNAVKFTEKGGISVEISL--------------------------- 386
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ +S + L+ +V DTG G+ + +R+F PF Q S
Sbjct: 387 ---------------------RHASRTEVELLFAVRDTGIGMSEKHVNRLFRPFSQADAS 425
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R HGGTG+GL+I K L M G IG S+ GS F F + +
Sbjct: 426 TTRKHGGTGLGLAICKRLTELMGGRIGVKSVRGKGSLFWFVVPL-----------RKSLE 474
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
P S + QG++AL++ +H+ G+ VE D L+++ + + +
Sbjct: 475 EVP-SARRDLQGVRALILGGDAEETDQIAHHMLDWGMVVEQSGDHYDALNKLKASATLGE 533
Query: 787 MILVEQEVWEKDTSVSTL--FVNNLRKLG--CGFQSKLFLLANSISSSRANTSTDGVSIP 842
+ E V + V + + ++R L G + FL+ + + GV
Sbjct: 534 SWMYELVVIDVRGLVPNVIQLIEDIRALPHMSGVE---FLILSGDGAEVKKLKKMGV--- 587
Query: 843 SVIMKPLRSSMLAASLQRAM----GVGNKGNIRNWELPSM-------------------- 878
V++ P R + ++R G G ++ + +P M
Sbjct: 588 DVLLAPFRRIEIERRVKRIFDVQEGYGGSHSLPDDLIPRMPDETFTWDDNQAAKNILSRN 647
Query: 879 ------SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF 932
+++H L +L+V+DN VN+ V L+R G V G +A +++ F
Sbjct: 648 KDGEKQTVQHTPLVGHVLVVEDNPVNMAVVKKMLQRAGLTPVTAMDGAEALKMV-GEENF 706
Query: 933 DACFMDIQMPEMDGYE 948
D MD QMP MDGYE
Sbjct: 707 DVVLMDCQMPRMDGYE 722
>gi|398792446|ref|ZP_10553077.1| signal transduction histidine kinase [Pantoea sp. YR343]
gi|398213175|gb|EJM99770.1| signal transduction histidine kinase [Pantoea sp. YR343]
Length = 909
Score = 222 bits (565), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 166/553 (30%), Positives = 260/553 (47%), Gaps = 97/553 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T L Q+DY+ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTGLSTNQRDYMSTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LE++ F LRA LD+ L L + + DKG+E+ V + +VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLVLESIPFPLRATLDETLVLLAPSAHDKGLEITVCLEKQVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QI+ NL+GN+IKFTE GH I++ EL S NT +
Sbjct: 403 IGDPLRLQQIMINLIGNAIKFTEHGH--------------IDLRVELRSISNTRA----- 443
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
L + V DTG GI + QS++F F Q S
Sbjct: 444 -----------------------------ELEIQVHDTGIGISEQQQSQLFQAFRQADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M GEI F S N GSTF H +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVSEMGGEIAFHSRQNQGSTFWV-------------HIHLDLN 521
Query: 727 NQPNSVSSEFQGMKAL---VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 783
++ ++A ++P P AK + + +QV+ S L+ +
Sbjct: 522 PNAPAIPRMLDDLRATPLAYIEPHPAVAKAVQEMLSITPLQVQHFS-SLEEMPDTHFPLL 580
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
++ + + E ++ T + + S++ L A+ + + I
Sbjct: 581 LMGLPVTEPHPATLSDALITRLHAHADSVLLALPSEMMLFADDLRAR---------GIAG 631
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWE---LPSMSLRHLLLGRKILIVDDNNVNLK 900
I KP+ + L L ++ +W+ LP + + L ++ VDDN NLK
Sbjct: 632 CIAKPVSLTRLLPMLL---------DLHDWQSDVLPRGARQPL----TVMAVDDNPANLK 678
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEM------LPCFE 954
+ A L+ ++ + ++A H+ D MDIQMP++DG LP
Sbjct: 679 LIGALLEEQVQHIILCDNAEQAIRQAR-LHKLDVILMDIQMPDIDGIRASEIIRSLPLHA 737
Query: 955 SFLLIAILVWKLN 967
+ ++A+ L+
Sbjct: 738 TTPIVAVTAHALD 750
>gi|428227107|ref|YP_007111204.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
gi|427987008|gb|AFY68152.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Length = 1170
Score = 222 bits (565), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 169/553 (30%), Positives = 262/553 (47%), Gaps = 98/553 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+K+AE A KS FLAT+SHEIRTPMN VLGM +L+DT+L+ Q+DYV T Q SG AL+
Sbjct: 505 RKEAERASQLKSIFLATMSHEIRTPMNAVLGMTGLLLDTDLNPEQRDYVETIQVSGDALL 564
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+LINE+LD +K+E+G++ELE + FN + L++V L + + KG+E+AV+ ++P L
Sbjct: 565 TLINEILDFSKLEAGEMELEILEFNPKDALEEVADLLAPSAHAKGLEMAVWSDPQLPPCL 624
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R RQ++ NL+GN+IKFT +G + + L+ + E E S S + P
Sbjct: 625 LGDVSRLRQVLINLVGNAIKFTAQGEVVIRAALLR--ASASEARLEFSVSDTGIGIQP-- 680
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
EAQ RIF PF QV S
Sbjct: 681 --------------------------------------------EAQKRIFQPFSQVDAS 696
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
++R +GGTG+GL+I + L M G IG S GS F F G + + ++
Sbjct: 697 MTRLYGGTGLGLAICRQLTELMGGAIGVESEWERGSRFWVRLGFQVGVAKPGPRKPEALD 756
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
P S+ G + LVVD ++ R G+QVE + A ++
Sbjct: 757 --PGSLV----GARLLVVDDNGTNRRILREQAIAWGMQVEEA-------AGAAEAWAMMQ 803
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL--------FLLANSISSSRANTSTDG 838
+ E + + D ++ + + + G Q K ++ S++ S +
Sbjct: 804 GAIAENQPY--DAAILDMLMPEMNGEMLGRQIKADPVLASTPLIMMTSVNQSGQRQTLLD 861
Query: 839 VSIPSVIMKPLRSSMLAASLQRAM---------------GVGNKGNI----RNWE---LP 876
+ + ++KP++ + L SL +A+ G++ + +W LP
Sbjct: 862 LGFAAYLIKPVKQARLLQSLVQAIAPKPPAESRGAWGDPATGDRPAVGCYLESWSSSPLP 921
Query: 877 SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDA 934
S KIL+V+D+ VN KVA L+R G A G++A ++L +P +D
Sbjct: 922 SQWAMQTTTKPKILVVEDSAVNQKVALKQLERLGYAADVAANGQEALQMLETIP---YDI 978
Query: 935 CFMDIQMPEMDGY 947
MD QMP +DGY
Sbjct: 979 VLMDCQMPVLDGY 991
>gi|227114812|ref|ZP_03828468.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 931
Score = 222 bits (565), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 177/533 (33%), Positives = 254/533 (47%), Gaps = 94/533 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T L+ TQ DY+ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLNTTQTDYLLTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE + F+L + LDDV+ L + + +KG+EL + I + VPE
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R +QIITNL+GN+IKFTE+G+I I VE S
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNI------------DIRVEKRRQESHQ-------- 442
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ L V + DTG GI QS++F F Q S
Sbjct: 443 ----------------------------VQLEVQIRDTGIGIAELQQSQLFQAFRQADTS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S N GSTF F N M
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITL--------PLNPHAMP 526
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASGSKI 784
+P + QG V+ PI A+ + L I Q ++ Q+ G
Sbjct: 527 TEP--AYTMLQGKHLAYVEYHPIAAQAT------LDILSQTPLIVSYSPTFEQLPEGE-- 576
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT-STDGVSIPS 843
+++L+ V ++T + + LR + C + L S++ A T GV +
Sbjct: 577 FDILLLGIPVQYRNTLLD--YTPRLRDI-CRRSPCVILALPSLAQMDAEQLKTFGVH--A 631
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR-------KILIVDDNN 896
+ KPL +S L LQ + + LP + H + R ++ VDDN
Sbjct: 632 CLSKPLAASRLLPLLQ------DSTLFQLSFLPDDAASHQSVVRHPARLPLSVMAVDDNP 685
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKA---TELLMPPHQFDACFMDIQMPEMDG 946
NLK+ L+ ++ E G+ A EL +QFD MDIQMP MDG
Sbjct: 686 ANLKLIGTLLEEQVETIILCESGQDAIAQAEL----NQFDVILMDIQMPGMDG 734
>gi|254411490|ref|ZP_05025267.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196181991|gb|EDX76978.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1342
Score = 222 bits (565), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 166/539 (30%), Positives = 256/539 (47%), Gaps = 83/539 (15%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
++E ++ A A KS+FLA +SHEIRTPMNGVLGM+ +L+ T+L Q+DY +T + S
Sbjct: 652 LVEAREAALEAVRFKSKFLANMSHEIRTPMNGVLGMVGLLLQTQLTSRQRDYAQTIRRSA 711
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
L+++IN++LD +K+E+G++ELE + F+L ++ VL + + +++ K +ELA + +V
Sbjct: 712 DHLLTIINDILDFSKLEAGEMELETIEFDLDGCIESVLDVLATQAEAKNLELATLVDRKV 771
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P L GDP R RQ++ NL N+IKFT +G + + V L E ++SKN
Sbjct: 772 PRQLKGDPARLRQVLLNLANNAIKFTPQGEVVIHVTL------------ETATSKNA--- 816
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
L +V DTG GI E Q ++F F Q
Sbjct: 817 ---------------------------------TLHFAVSDTGVGISPEGQEKLFQSFSQ 843
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +R +GGTG+GL+I K LV M GEIG S GSTF FTA F
Sbjct: 844 VDNSTTRQYGGTGLGLAICKQLVDLMGGEIGVESQVGKGSTFWFTAKFDT---------- 893
Query: 723 QQMNNQPNSVSSEFQGMKALVV-DPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQI 778
Q N + + +K LVV + R R V RY + GI ++ + L L Q
Sbjct: 894 -QTNAESPTTPFALTHLKLLVVSESRTTRQSV-RYLVNTWGIGIDEANSAELSLDALRQA 951
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
AS + ++++ + W+ + +R +K ++ ++
Sbjct: 952 ASLDQPYDVVICD---WQLPQIEDGSLIKTIRSDSALSHTKAVVM-TPMNQRDQVEQLLS 1007
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR----------K 888
V S ++KP+R+S L SL A+ + EL +H G
Sbjct: 1008 VGAASYLLKPVRASRLFDSLMAAVAPEMIKEQQEEELA----QHTTTGDFPHKQPATPLN 1063
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
IL+ +D+ +N +V L+ G C G+ EL+ + +D MD QMP +DGY
Sbjct: 1064 ILLAEDHPINQQVILNQLQMLGYEADCAPNGQVVLELV-EQNSYDIILMDCQMPVLDGY 1121
>gi|343497047|ref|ZP_08735129.1| sensory box sensor histidine kinase/response regulator [Vibrio
nigripulchritudo ATCC 27043]
gi|342820169|gb|EGU54997.1| sensory box sensor histidine kinase/response regulator [Vibrio
nigripulchritudo ATCC 27043]
Length = 1322
Score = 222 bits (565), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 169/550 (30%), Positives = 266/550 (48%), Gaps = 71/550 (12%)
Query: 398 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
I +VG T + ++E D ++E K+ A+ K FLA +SHEIRTPMN ++G
Sbjct: 559 IMGIVGTFMDVTETK--RLERD---LIESKESADKLSKIKGDFLANMSHEIRTPMNAIMG 613
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
M +++ ++L Q+DYV S K L+ +IN++LD +KVE+GKL++E FNL +LD
Sbjct: 614 MTHLVLSSDLGEKQRDYVEKIDYSSKQLLGIINDILDFSKVEAGKLQIENTDFNLDKVLD 673
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
++ S+ S K+++KG+EL +S +P LIGDP R Q++ NL GN++KFT+ G + ++
Sbjct: 674 NLASVLSVKAENKGIELIFNVSPNIPNQLIGDPLRLGQVLINLAGNAVKFTDTGEVIIS- 732
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 637
V EL + K+ + L
Sbjct: 733 -----------VSEELRNEKSAV------------------------------------L 745
Query: 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697
SVEDTG G+ E S +F F Q S +R +GGTG+GLSIS+ L+ M GEI S
Sbjct: 746 KFSVEDTGIGMTPEQMSGLFQAFSQGDTSTTRKYGGTGLGLSISQQLIQLMGGEIMVSSH 805
Query: 698 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 757
GS F F G + Q +ALV+D +
Sbjct: 806 YGRGSHFWFELELDIGEERPTKERYLIT-----------QHKRALVIDDNDTARLIVASM 854
Query: 758 IQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817
+ + +V+V S+ + K +++LV+ ++ E D V T + ++RK
Sbjct: 855 LSDMMFEVDVASNASDAFHILEQAQKQYDLLLVDWQMPEMD-GVQT--IEHIRKHDLSPG 911
Query: 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG-NKGNIRNWELP 876
SK+ L+ + N G I +++KP+ S L ++ +G +K I+
Sbjct: 912 SKMILITAYGNQLDFNDQY-GHIIDGLVLKPINPSNLLDTIVDTLGSYISKEEIKEAA-E 969
Query: 877 SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACF 936
S + H + G +IL+V+DN N ++A+ L+ GA V G +A ++L H FD
Sbjct: 970 SPEVVHDISGTRILLVEDNITNQEIASTILENEGAQVSIANHGIEALDML-DNHTFDVVL 1028
Query: 937 MDIQMPEMDG 946
MD+QMP MDG
Sbjct: 1029 MDMQMPVMDG 1038
>gi|302879767|ref|YP_003848331.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
gi|302582556|gb|ADL56567.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
ES-2]
Length = 1233
Score = 222 bits (565), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 157/540 (29%), Positives = 252/540 (46%), Gaps = 79/540 (14%)
Query: 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
+ + K+ AEAA AK FLA +SHEIRTPMNG++GM ++ +DTEL+ Q++Y+ Q+S
Sbjct: 588 ALRQAKEAAEAASRAKGDFLANMSHEIRTPMNGIIGMTELALDTELNSEQREYLGLVQSS 647
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
AL++++N++LD +K+ESGKL++E + F+L +L + + + ++ K +EL ++++
Sbjct: 648 ADALLTILNDILDFSKIESGKLDIENIEFSLEHMLRETMKSLAVRAHQKQLELLLHVAPD 707
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
VP+ L+GDPGR RQ+I NL+GN+IKFT G I V V L
Sbjct: 708 VPDRLLGDPGRLRQVIVNLVGNAIKFTASGEIEVDV--------------------QCLK 747
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
G P + + SV DTG GI + IF F
Sbjct: 748 GAPEGQ---------------------------MRMQFSVRDTGIGIARDKFQTIFESFS 780
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q S +R +GGTG+GL+IS LV M G I S GS F FT S +
Sbjct: 781 QADTSTTRRYGGTGLGLTISAQLVSLMGGSIALESEVGQGSNFYFTLDMPMLSVSPLAEY 840
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS- 780
Q + GM L+ D ++ + + + V S+ + L ++A
Sbjct: 841 QQ---------TGRIAGMTVLIADDNATNRRLLQEMLTNWKMHPVVTSNGQEALDELARA 891
Query: 781 -------GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
G ++++ + + + +E ++R+ L +L + A+
Sbjct: 892 TASGHPYGLALLDLQMPDMDGFE--------LAEHIREHPEYLVKTLMMLTSEGQRGHAS 943
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
+ + + + +MKP+ S L ++ A+GV + L M R +L+ +
Sbjct: 944 RCRE-LGVAAYLMKPIAQSELFDAIMTALGVSEQPLTTRHSLKEMRRR-----LNLLLAE 997
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCF 953
DN VN +A L + G V G +A +L FDA MD+ MPEM+GY+ C
Sbjct: 998 DNAVNQTLATRLLTKLGHTVTVANNGIEAVQLWQNG-SFDAILMDVDMPEMNGYDATRCI 1056
>gi|300867388|ref|ZP_07112044.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300334639|emb|CBN57212.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 1120
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 171/558 (30%), Positives = 258/558 (46%), Gaps = 92/558 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
V I V + + ++E ++ A A KSQFLA +SHEIRTPMNGVLGM +L+ L+
Sbjct: 387 VGGIVLVSDRINELVEAREAAIEASRVKSQFLANMSHEIRTPMNGVLGMAQLLLRLSLEA 446
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
++Y +T S + L+S+IN++LD +K+E+G++ LE + F+L ++ ++ + +++
Sbjct: 447 KPREYAQTIYRSAEHLLSVINDILDFSKIEAGEMRLETLDFDLDVCIESMVEMVVATAEE 506
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
KG+EL V I VP L GDPGR +QI+ NL+ N+IKFT++G + V V L VD
Sbjct: 507 KGLELNVLIESSVPRQLQGDPGRLKQILLNLVNNAIKFTDRGQVLVRVSLKSSTVDR--- 563
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
LI SV D+G GI
Sbjct: 564 ----------------------------------------------KLIFSVRDSGIGIS 577
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
E Q ++F F QV S +R +GGTG+GL I K LV M GEIG + GS F FT
Sbjct: 578 PEGQKKLFQSFSQVDGSPTRQYGGTGLGLVICKQLVEMMGGEIGVRTSVGKGSNFWFTIP 637
Query: 710 FGNGSSTSNEHNSQQMNNQP--NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG---IQ 764
QM QP S S+ G + LVV + V+R + G +
Sbjct: 638 L-------------QMQPQPVERSRGSQIAGKRLLVVSHSAVTRAVARAIAEARGAYCTE 684
Query: 765 VEVVSDQLQCLSQIASGSKI----INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 820
E L L + SG++ + ++ ++ + DT FV +L L
Sbjct: 685 AEDARTVLAVLEEANSGARREQEHYTAVFLDLQLPQLDTQGFAAFVRSL------LVKPL 738
Query: 821 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG---------VGNKGNIR 871
+ S+ + + S ++KPLR+S SL A V ++ N
Sbjct: 739 LIGVTSLRDRHKAEALCSLGAASYLIKPLRASQFCDSLLPATTKEEEEKFSYVTSQDNST 798
Query: 872 --NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 929
N++LP L + L KIL+ +D+ +N +V L G C G++A ++L
Sbjct: 799 KPNYQLP---LSNSQLSVKILLAEDHYINQQVILNQLMVLGYQADCAANGQEALKML-EL 854
Query: 930 HQFDACFMDIQMPEMDGY 947
+D MD QMP +DGY
Sbjct: 855 QTYDVVLMDCQMPILDGY 872
>gi|83593696|ref|YP_427448.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
11170]
gi|386350441|ref|YP_006048689.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum F11]
gi|83576610|gb|ABC23161.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
11170]
gi|346718877|gb|AEO48892.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum F11]
Length = 1560
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 161/545 (29%), Positives = 267/545 (48%), Gaps = 78/545 (14%)
Query: 413 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 472
+++ +E ++ K+ AE A V K QFLA +SHEIRTPMN +LGML ++ T L Q
Sbjct: 872 VSRRKEFERALVLAKQAAEEASVVKGQFLANMSHEIRTPMNAILGMLTLVQRTALTPHQA 931
Query: 473 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 532
DYV A ++ +L+ L+N++LD +K+E+GKL LE F L +L D+ + SG DKGV
Sbjct: 932 DYVCKAHSAAGSLLGLLNDILDFSKIEAGKLHLEPHPFRLETVLRDLAVVLSGSYGDKGV 991
Query: 533 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592
E+ I+ +P++ IGD R RQ++ NL GN++KFT++G + V+V ++
Sbjct: 992 EVLFDIAPHLPDSFIGDDLRLRQVLLNLAGNALKFTDQGQVIVSVGVL------------ 1039
Query: 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 652
+ D + + ++V DTG GI +
Sbjct: 1040 ------------------------------------AREDDRLTMRMAVSDTGIGIAADQ 1063
Query: 653 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712
+ IF F Q S +R GG+G+GL+I+++LV RM G + S P GS F F
Sbjct: 1064 LASIFGAFEQAETSTTRRFGGSGLGLTITRHLVERMGGVLRVESQPGRGSRFWFDITL-- 1121
Query: 713 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 772
S E + + +P ++ LVV+ P+ + +Q LG ++V +
Sbjct: 1122 --PVSGEGSESAESGRP---------LRVLVVEDNPVAGGILAQTVQGLGYDCDLVQESA 1170
Query: 773 QCLSQIA---SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF--QSKLFLLANSI 827
+ ++I + + + +L++ + E D + LR++G QS + + A
Sbjct: 1171 ETKARIVAADAAGRPYDAVLLDWRMPEVDGLTTARI---LREMGVTLCPQSIIMVTAYGR 1227
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL---L 884
T +V+ KP+ L +L R ++G E +++ R L L
Sbjct: 1228 DVLSLAEQTGDAPFDAVLTKPVTPGQLRDALLRRDRATSEG-----EATALAPRGLPTPL 1282
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QFDACFMDIQMPE 943
GR++L+V+DN +N +VAA L GA + E G++ +++ +DA MDIQMP+
Sbjct: 1283 AGRRLLVVEDNAINRQVAAELLAGAGAEIDLAEGGERGVMMVLRGEIAYDAVLMDIQMPD 1342
Query: 944 MDGYE 948
+DG+E
Sbjct: 1343 IDGFE 1347
>gi|320354894|ref|YP_004196233.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
gi|320123396|gb|ADW18942.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
Length = 717
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 160/523 (30%), Positives = 254/523 (48%), Gaps = 74/523 (14%)
Query: 434 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVL 493
++AKS+FLA +SHEIRTPMNG++G DML+DT LD QQ++ +T + S AL+SLIN++L
Sbjct: 195 NIAKSEFLAAMSHEIRTPMNGIIGFTDMLLDTGLDEEQQEFAQTIKRSASALLSLINDIL 254
Query: 494 DQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRF 553
D +KVE+GKL+LE + F+ DV L K + +E+ I D +P ++GDPGR+
Sbjct: 255 DFSKVEAGKLDLECIPFDPEITAQDVCDLVRPKVASRPIEVLCRIDDTLPANVMGDPGRY 314
Query: 554 RQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK 613
RQ++ NLMGNS KFT+KG + + + + +E ++I + + ++T G P ++ S
Sbjct: 315 RQVLVNLMGNSAKFTKKGELELAIAVDDETEETITLHARI---RDTGIGIP-EEKLESI- 369
Query: 614 GFKTFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672
F+ F Q DGST +R +G
Sbjct: 370 -FEAFRQADGST-------------------------------------------TREYG 385
Query: 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSV 732
GTG+GLSI + + M G + S ++GSTF FTA QQ + N V
Sbjct: 386 GTGLGLSICRKIAALMHGHVWAESELDVGSTFHFTATLNKA--------PQQRIKRFNRV 437
Query: 733 SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ---LQCLSQIASGSKIINMIL 789
S + LVVD + R+ + + V + D L Q + ++I+
Sbjct: 438 S--LANKRVLVVDDNLTNLSILRHILMAAELHVVAIHDSSNVRSVLQQAIENHALFDLII 495
Query: 790 VEQEVWEKD-TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKP 848
++ ++ D +++ + + L + + LLA + S+ R + + KP
Sbjct: 496 LDIQMPAPDGYALAHIIRHELAETAT-----IPLLAYTSSTERNAQRCKEAGFDAFLTKP 550
Query: 849 LRSSMLAASLQRAMG---VGNKGNIRNWELPSMSLRHLLLGR-KILIVDDNNVNLKVAAA 904
R +L ++++ + V + + S+R + +IL+ +DN VN K+A
Sbjct: 551 TRREILFKTIEKLLDPEEVIETAPTKETFITQYSVREEIKQSIRILLAEDNPVNQKLAVL 610
Query: 905 GLKRYGAAVVCVERGKKATELLM-PPHQFDACFMDIQMPEMDG 946
L + G V G+KA +L P FD MDIQMPEMDG
Sbjct: 611 ILNKAGYQVEVASNGRKAVDLFTRRPENFDLILMDIQMPEMDG 653
>gi|302760541|ref|XP_002963693.1| hypothetical protein SELMODRAFT_451444 [Selaginella moellendorffii]
gi|300168961|gb|EFJ35564.1| hypothetical protein SELMODRAFT_451444 [Selaginella moellendorffii]
Length = 825
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 164/542 (30%), Positives = 269/542 (49%), Gaps = 51/542 (9%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ E + KAE+A A+S+FLA +SHEIRTP+NGV+GM +L+DT+ Q++ + T + SG
Sbjct: 258 LAEARDKAESAAKARSEFLAVMSHEIRTPLNGVIGMASVLLDTDPTPDQEECLETIRTSG 317
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
+ L+S+IN++LD +K+++GKL + V NLR++++DV S+ + + + KGVEL V+
Sbjct: 318 ECLLSIINDILDFSKIDAGKLTIAPVPCNLRSLVEDVGSMLALRVEPKGVELVVHYDSPF 377
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
+ D R RQ++ NL+GNS KFT GHI V V L+ + T+ ++
Sbjct: 378 FAVSV-DTIRLRQVLINLIGNSCKFTHAGHILVNVSLLCKSCQKQLKATDFWECRS---- 432
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
+ +S+KG + + P + S+ D+G GI + +F F Q
Sbjct: 433 --CSKDVNSFKGRELDSDAKHVKPVEY-------FKFSISDSGIGIAEDKLGLLFEKFSQ 483
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
S +GGTG+GL++SK LV M GEI S +GSTF+F+ +E N
Sbjct: 484 CDQLTSSMYGGTGLGLAVSKSLVDLMGGEIVVESREGVGSTFSFSIPL--EIDVVSEKNR 541
Query: 723 QQMNNQPNSVSSEFQGM-KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS- 780
Q+ P SS FQ + LV+D I +V I+ GI+ + D L +A+
Sbjct: 542 HQV---PLLYSSRFQARPRILVIDNHKITRQVMCEQIESWGIECQCSGDVASALKLLANR 598
Query: 781 -GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
+++ +LV E ++K + +++ F F+L + R N + +
Sbjct: 599 FHVAVVDNVLV--ETFQKKLQI--------KRIAEEFPGTKFILLKPV-GHRVN-AQEAY 646
Query: 840 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM-------------SLRHLLLG 886
+ +PLR S L +L + + + P++ + RH
Sbjct: 647 GFSCTLSRPLRQSTLKDALLKTFNLLGFKSFEEASRPALASSNRSKAGDKAQTRRH---- 702
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K+L+V+DN VN VA L G V G++A ++ P ++D FMD MP +DG
Sbjct: 703 PKVLVVEDNKVNQMVAIRLLNNLGCTVDVACNGQEAVSIVDKPVEYDLIFMDCHMPVLDG 762
Query: 947 YE 948
++
Sbjct: 763 FQ 764
>gi|385787352|ref|YP_005818461.1| hybrid sensory histidine kinase BarA [Erwinia sp. Ejp617]
gi|310766624|gb|ADP11574.1| hybrid sensory histidine kinase BarA [Erwinia sp. Ejp617]
Length = 909
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 171/525 (32%), Positives = 253/525 (48%), Gaps = 88/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++A+ A KS+FLA +SHE+RTP+NGV+G + T L+ TQ+DY+ T + S L+
Sbjct: 283 KRRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTMLNSTQRDYLHTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LE + F LRA LD+V+ L + + +KG+EL + I VP+
Sbjct: 343 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QII NL+GN+IKFTE G+I I VE
Sbjct: 403 IGDPLRMQQIIVNLLGNAIKFTESGNI------------DIRVEK--------------- 435
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
++ S + + L V + DTG GI + QS++F F Q S
Sbjct: 436 ---------------------RALSNNRMELEVQIHDTGIGISEKQQSQLFQAFRQADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M GEI F S + GSTF F H + ++N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWF-------------HINLELN 521
Query: 727 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN+ S +G V+P AK + +QV S L L+Q
Sbjct: 522 --PNAASDPRIMDCVEGQHLAYVEPNAAAAKAVMEMLNATPMQVS-YSPSLDELAQDRYD 578
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
++ + +V+ E D T + + ++ + A + + GV+
Sbjct: 579 VLLMGLPVVQGHSLEIDEEQLTPILQRANSVIMALPFQMQIYAEDLKAR-------GVT- 630
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ R + V + R P LL +++ VDDN NLK+
Sbjct: 631 -ACLIKPL-------SMTRLLPVLVDHHHRRDMQPQAE--RTLLPLRVMAVDDNPANLKL 680
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ A +V + G+ A H D MDIQMP++DG
Sbjct: 681 IGALLEEQVADIVLCDSGEAAIAQARLQH-LDIILMDIQMPDIDG 724
>gi|428212990|ref|YP_007086134.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428001371|gb|AFY82214.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 1811
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 159/536 (29%), Positives = 261/536 (48%), Gaps = 74/536 (13%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+++ +++A A KSQFLA +SHEIRTPMNGV+GM D+L+ T L QQD+V+ + SG
Sbjct: 1139 LVQAREQALQASRMKSQFLANMSHEIRTPMNGVIGMTDLLLKTPLSSQQQDFVKILKTSG 1198
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
+ L+ LIN++LD +K+E+G++ L+ F L + +++ + L + ++Q K +EL + +
Sbjct: 1199 QNLLILINDILDFSKLEAGEMRLDRTEFYLNSCIEETIDLLATQAQSKRLELLFLVDSEI 1258
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P LIGDP R RQ++ NL GN++KFTE+G + V S++++T +++
Sbjct: 1259 PPRLIGDPTRLRQVLMNLTGNALKFTEEGEVVVQA--------SLQIQTPTTTT------ 1304
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
L V DTG GI + Q ++F F Q
Sbjct: 1305 ----------------------------------LYFEVRDTGIGINAQDQHKLFQSFSQ 1330
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +R +GGTG+GL+I K LV M GE+G S +GS F FTA F +
Sbjct: 1331 VDASTTRKYGGTGLGLAICKQLVTLMGGELGVESSVGVGSRFWFTATF-----ETVPGGV 1385
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
+ + P S + ++ LV+D ++ +++ +Q E V++ + ++ + +
Sbjct: 1386 KVLPELPQSP----RNLRLLVIDHNATSREMICAYLESWHLQGEAVANSSEAMAILQNAD 1441
Query: 783 KIIN-----MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 837
N +I ++ E +T TL + F S +++ SI
Sbjct: 1442 AEGNPYSLVLIDLQNAQSEGETLAKTLIYD------ASFSSLKWIVMVSIHQHELVKRLL 1495
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAM-----GVGNKGNIRNWELPSMSLRHLLLGRKILIV 892
++KP+++S L L +A GV +R S + + KIL+V
Sbjct: 1496 KKGAAGYLLKPIKASRLLEGLTQAFQSQTSGVSPSLFLREDSGRSSPVLEPVKNLKILLV 1555
Query: 893 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+D +N KV LK G A CVE G++A + L +D MD MP +DGY+
Sbjct: 1556 EDTPINQKVILNQLKVLGYAADCVENGQQALDCLA-EQSYDIVLMDCLMPVLDGYK 1610
>gi|328951841|ref|YP_004369175.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
11109]
gi|328452165|gb|AEB07994.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
11109]
Length = 1121
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 171/551 (31%), Positives = 259/551 (47%), Gaps = 97/551 (17%)
Query: 420 YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQ 479
Y E + AEAA+ AKS FLAT+SHEIRTPMNGV+GM ++L+DT L+ Q+++ T +
Sbjct: 467 YAEASEARTAAEAANEAKSTFLATMSHEIRTPMNGVIGMTNLLLDTPLNEEQREFCETIR 526
Query: 480 ASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 539
SG+AL+++IN++LD +K+E+GK+ELE F+LR L+ L L +Q KG+EL ++
Sbjct: 527 GSGEALLTIINDILDFSKIEAGKMELEHQPFDLRECLESALDLIVTPAQQKGLELVYHVD 586
Query: 540 DRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNT 599
+VP T+ GD R RQI+ NL+ N++KFTE+G I +TV
Sbjct: 587 KQVPATIAGDVTRLRQILLNLLNNAVKFTEQGEISLTVR--------------------- 625
Query: 600 LSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659
+DG + + L+ SV D+G GIP + +R+F
Sbjct: 626 -------------------GEDGPDAAALPPGSMLLRF--SVADSGIGIPPDRLNRMFQS 664
Query: 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS--IPNIGSTFTF---TAVFGNGS 714
F Q+ S +R +GGTG+GL+ISK L M G + S +P GSTF T
Sbjct: 665 FSQIDASTTRKYGGTGLGLAISKRLSEMMGGRLWVESKGVPGKGSTFHLLIRTEPVAMPV 724
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 774
T +E ++ QP + G + L VD ++ Q G+ V +
Sbjct: 725 ITRHEL----LHRQP-----QLAGKRLLAVDDNDTNRRILVLQSQSWGMLVRDSRSPQEA 775
Query: 775 LSQIASGSKI-----------INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 823
L I G +N +++ +E+ ++ + ++L G + LF
Sbjct: 776 LGWIKRGDPFDLAILDMQMPDMNGLMLGREIRAHRPNLPLVLYSSLGCREVGPDAALFAF 835
Query: 824 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL------QRAMGVGNKGNIRNWELPS 877
+ KP++ S L +L Q A + +++ P
Sbjct: 836 Q--------------------LTKPIKPSQLYDALLTIFSAQPAATRKHDEAVKSQIDPD 875
Query: 878 MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937
++ R L KIL+ +DN VN KVA L R G V G +A E + +D M
Sbjct: 876 LATR---LPLKILLAEDNAVNQKVALRLLARLGYRADVVANGLEALEAVR-RQSYDVVLM 931
Query: 938 DIQMPEMDGYE 948
D+QMPEMDG E
Sbjct: 932 DVQMPEMDGLE 942
>gi|398800953|ref|ZP_10560211.1| signal transduction histidine kinase [Pantoea sp. GM01]
gi|398093502|gb|EJL83882.1| signal transduction histidine kinase [Pantoea sp. GM01]
Length = 909
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 166/553 (30%), Positives = 262/553 (47%), Gaps = 97/553 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T L Q+DY+ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQMLKTGLSTNQRDYMSTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LE++ F LRA LD+ L L + + DKG+E+ V + +VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLVLESIPFPLRATLDETLVLLAPSAHDKGLEITVCLEKQVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QI+ NL+GN+IKFTE GHI + V EV + LS+++
Sbjct: 403 IGDPLRLQQIMINLIGNAIKFTEHGHIDLRV----------EVRS-LSATR--------- 442
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ L + V DTG GI + QS++F F Q S
Sbjct: 443 ----------------------------VELEIQVHDTGIGISEQQQSQLFQAFRQADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R HGGTG+GL I++ LV M GEI F S PN GSTF H +N
Sbjct: 475 ITRRHGGTGLGLVITQKLVSEMGGEIAFHSRPNQGSTFWV-------------HIHLDLN 521
Query: 727 NQPNSVSSEFQGMKAL---VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 783
++ ++A ++P P AK + + +QV+ S L+ L
Sbjct: 522 PNAPAIPRMLDDLRATPLAYIEPHPAVAKAVQEMLSITPLQVQHFS-SLEELPDTHFPLL 580
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
++ + + E ++ + + S + L A+ + + I
Sbjct: 581 LMGLPVTEPHPATLPDALIQRLRGHADSVLLALPSDMMLFADDLRAR---------GIAG 631
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWE---LPSMSLRHLLLGRKILIVDDNNVNLK 900
I KP+ + L L ++ +W+ LP + + L ++ VDDN NLK
Sbjct: 632 CIAKPVSLTRLLPMLL---------DLHDWQRDALPRGARQPL----TVMAVDDNPANLK 678
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEM------LPCFE 954
+ A L+ ++ + ++A H+ D MDIQMP++DG LP
Sbjct: 679 LIGALLEEQVQHIILCDNAEQAIRQAR-LHKLDVILMDIQMPDIDGIRASEIIRSLPLHA 737
Query: 955 SFLLIAILVWKLN 967
+ ++A+ L+
Sbjct: 738 TTPIVAVTAHALD 750
>gi|220907616|ref|YP_002482927.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
gi|219864227|gb|ACL44566.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
Length = 887
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 178/544 (32%), Positives = 257/544 (47%), Gaps = 92/544 (16%)
Query: 439 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKV 498
+FLA +SHEIRTPMN V+GM +L+DT L Q+DYV T SG+AL+ LIN++LD +K+
Sbjct: 333 RFLAVMSHEIRTPMNAVIGMTTLLLDTSLTPQQRDYVETIHGSGEALLCLINDILDFSKI 392
Query: 499 ESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIIT 558
ESGKLELE FNLR L++ + L + ++ +KG+ELA IS PE + GD R RQI+
Sbjct: 393 ESGKLELETRPFNLRTCLEEAIDLLATRATEKGIELAYLISPPTPEQIQGDVIRLRQILV 452
Query: 559 NLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTF 618
NL+ N+IKFTE G + ++V E+ ++ LSG
Sbjct: 453 NLINNAIKFTEAGEVVISV-----------TAREVFPLRSQLSG---------------- 485
Query: 619 NQDGSTSPFKSSSA--------DLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 670
G PF S+A + +VEDTG GIP++ R+F PF QV S+ R
Sbjct: 486 ---GEEPPFSVSAAYETLPYEMPQYEIQFAVEDTGIGIPIDRLDRLFRPFSQVDSSVRRH 542
Query: 671 HGGTGIGLSISKYLVGRMKGEI-------------------GFVSI-PNIGSTFTFTAVF 710
+GGTG+GL+ISK L M G I GF + GSTF FT +
Sbjct: 543 YGGTGLGLAISKKLAETMGGRIWVSSRDETGAIGRAGEPPTGFTDVLLRQGSTFYFTVLV 602
Query: 711 GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ---RLGIQVEV 767
+ + + L+VD P K+ + Q L
Sbjct: 603 PALPQPPAPPPPPGLAGK-----------RLLIVDDNPTYRKILSLYSQFWGTLPYTFAA 651
Query: 768 VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
S+ L+ L Q ++ +++ + + D V +R+L L L N+
Sbjct: 652 GSEALRRLQQQPG----FDLAIIDDRLADMD---GLSLVEQIRQLPQTATLPLIFLTNTS 704
Query: 828 SSSR-ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV--GNKGNIRN--WELPSMSLRH 882
R A+ +G+ ++ KPLR S L +L + + V + N P + ++
Sbjct: 705 QRERVASHLQNGL----ILTKPLRQSQLQDALLKLLSVEPSATAALENPPSSFPPLGSQN 760
Query: 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
LL +IL+ +DN VN KVA LKR G + G + E L +D MD+QMP
Sbjct: 761 LL---RILLAEDNAVNQKVALHLLKRLGYGADVAKNGIQVLEALR-QQSYDVILMDVQMP 816
Query: 943 EMDG 946
EMDG
Sbjct: 817 EMDG 820
>gi|389879552|ref|YP_006381782.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
gi|388530942|gb|AFK56137.1| multi-sensor hybrid histidine kinase [Tistrella mobilis KA081020-065]
Length = 1397
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 174/551 (31%), Positives = 259/551 (47%), Gaps = 89/551 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAE---AADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE 466
V IA + E M EL++ E AA+ AKS FLA +SHEIRTPMNGV GML +L+ T
Sbjct: 729 VAAIADMTERDRSMAELRRAREEADAANAAKSAFLANMSHEIRTPMNGVTGMLQILLATP 788
Query: 467 LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGK 526
LD Q+ Y A+ S +L+ LI+++LD +K+E+G++ELE + F+L ++D V+++ + +
Sbjct: 789 LDADQRRYAEVARDSADSLLGLIDDILDVSKLEAGRMELERLPFDLEELVDGVIAILAPR 848
Query: 527 SQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS 586
++D+ ++LA + + IGDP R RQI+ NL GN++KFT GH+ + V +
Sbjct: 849 ARDRRIDLAGVVDSSAVGSWIGDPTRIRQILVNLAGNAVKFTTAGHVSIEVSAI------ 902
Query: 587 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQ 646
++ D L VEDTG
Sbjct: 903 ------------------------------------------AADDDRGRLRFRVEDTGV 920
Query: 647 GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 706
GI + ++F PF Q S++R GGTG+GL+I + L M G I VS GS FT
Sbjct: 921 GIAADHLDQLFRPFSQADASVTRRFGGTGLGLAICRDLTALMGGTIDVVSREGEGSVFTV 980
Query: 707 TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ-V 765
E + P+ G +ALVVD + ++ I+ LG+ V
Sbjct: 981 --------EIGLERVADAARTTPS--MPVLAGRRALVVDAVEVTRRMVARQIEALGMDCV 1030
Query: 766 EVVS--DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 823
EV S + L L +G + I+++ +S L NL L ++ L
Sbjct: 1031 EVASAGEALIILEMSVAGERPIDLV------------ISGL---NLTGLSAARLARWVRL 1075
Query: 824 ANSISSSRANTSTDGVSIP------SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS 877
++ + +T GV +P VI KP+R LA + R + P+
Sbjct: 1076 DPDLAGVKVIAATCGVPVPDEELYDGVISKPVRRRELADLMHRLLDPEAAAARGVSPAPA 1135
Query: 878 MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937
H GR++L+V+DN N VA L+R G V E G + EL + FDA M
Sbjct: 1136 EGPGH---GRRLLLVEDNATNRTVATVMLERQGYTVETAETG-EGVELRLAEGSFDAVLM 1191
Query: 938 DIQMPEMDGYE 948
DIQMP +DG E
Sbjct: 1192 DIQMPVVDGIE 1202
>gi|254506216|ref|ZP_05118360.1| PAS fold family protein [Vibrio parahaemolyticus 16]
gi|219551034|gb|EED28015.1| PAS fold family protein [Vibrio parahaemolyticus 16]
Length = 1319
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 164/529 (31%), Positives = 260/529 (49%), Gaps = 77/529 (14%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ E K+ A+A AK FLA +SHEIRTPMN +LGM + ++TELD +Q+ Y+ S
Sbjct: 594 LREAKELADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTELDPSQKKYLTRINESA 653
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
K L+ +IN++LD +K+E+GKL +E++ F+L + D+++++ S K+ +KGVE + I +V
Sbjct: 654 KNLLGIINDILDFSKIEAGKLTVESIDFSLDEVFDNLVNVVSYKAHEKGVEFLLDIDPKV 713
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P L+GDP R Q++ NL NS+KFTEKG I V+ LVE++
Sbjct: 714 PIGLVGDPLRLGQVLVNLCSNSVKFTEKGEIVVSA-LVEQL------------------- 753
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
+++ +T F SV+DTG GI E +F F Q
Sbjct: 754 ----------------DENRATIRF------------SVKDTGIGIAKEKIQHLFRAFSQ 785
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
SI+R GGTG+GLSISK LV M GE+ S GS F+FT G
Sbjct: 786 ADSSITRQFGGTGLGLSISKQLVELMGGELVVSSSEGTGSVFSFTIDCG--------LQE 837
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
+M + VS+ G +AL+VD + R + + + VS+ + L ++
Sbjct: 838 AKMRDLSEPVSA-LAGKRALIVDDNDSARSILRTLLTAMHFDAKAVSNAYEALDELK--E 894
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLF-----LLANSISSSRANTSTD 837
+ +M+ V+ W + +N L L +L L + + T
Sbjct: 895 RAYDMLFVD---W------TMPGMNGLELLQKAHDERLLPHCKVFLVTAYGRELSLTEQS 945
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
I ++I+KP+ S L ++ + G+ ++ + PS ++R + +L+V+DN V
Sbjct: 946 SKLIDALIVKPVNPSNLLDAVMDSFGI---EHVTSKVTPSDNVRPRFEKQTVLLVEDNEV 1002
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
N +VA L V+ G++A ++L H+ MD+QMP MDG
Sbjct: 1003 NQEVALGLLSDTNLDVLVANHGQEAIKML-GHHKVSLVLMDMQMPVMDG 1050
>gi|323492298|ref|ZP_08097454.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio brasiliensis LMG 20546]
gi|323313462|gb|EGA66570.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio brasiliensis LMG 20546]
Length = 1197
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 167/534 (31%), Positives = 271/534 (50%), Gaps = 78/534 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+ +A +A+ AKS FLA +SHEIRTPMN ++GM + + T+L Q++Y+ + S +L+
Sbjct: 471 RDEANSANRAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQRNYIHKVKLSADSLL 530
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
LIN++LD +K+E+GKL++E V F+L +LD++ +L ++ ++G+EL ++I VP TL
Sbjct: 531 GLINDILDFSKIEAGKLDIEQVDFHLENVLDNISNLVGLRASERGLELLIHIDRDVPTTL 590
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R QI+ NL N++KFTEKG I +++ +VE D
Sbjct: 591 VGDPLRLGQILINLANNAVKFTEKGEIKISIRVVERNGD--------------------- 629
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
DL+ L SVED+G G+ E +++F+ F Q S
Sbjct: 630 --------------------------DLV-LQFSVEDSGIGMTPEQTAKLFSKFTQADSS 662
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+ISK L M G+I S GS F+F+ +T H +Q
Sbjct: 663 TTRKYGGTGLGLAISKELSQLMGGDIEVQSEAGKGSCFSFSI------ATRVSHALKQ-- 714
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV-----VSDQLQCLSQIASG 781
+ SV E +K LVVD A++ I + +Q +V V D L Q
Sbjct: 715 -EDISVPVELNKLKVLVVDDNA-SARIIVEDILK-SLQFDVFTASNVDDAYSELQQAIGS 771
Query: 782 SKIINMILVEQEVWEKD-TSVSTLFVNNLRKLGCGFQSKLFLLA----NSISSSRANTST 836
+ ++++ + ++ KD + L N+ + Q KL +L +S + N
Sbjct: 772 NSQYDLLISDWKMPGKDGIDLVELVSQNIAQ---SAQPKLLMLTAYAREELSEAMENR-- 826
Query: 837 DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDD 894
G+ PS++ KP+ +S L ++ GV + R+ L ++ L G ++L+V+D
Sbjct: 827 -GLESPSILDKPVTASHLFDAIVTLYGVSSSRLSRSEAEEQHQLANVQQLAGAQLLLVED 885
Query: 895 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
N +N ++A L+ V E G+ A + L ++FD MD QMP MDGY+
Sbjct: 886 NEINQELAIELLEGQQMHVTVAENGQVAID-LYKANEFDGILMDCQMPVMDGYK 938
>gi|381167829|ref|ZP_09877034.1| Putative two-component sensor histidine kinase, unorthodox system
[Phaeospirillum molischianum DSM 120]
gi|380682905|emb|CCG41846.1| Putative two-component sensor histidine kinase, unorthodox system
[Phaeospirillum molischianum DSM 120]
Length = 1087
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 156/534 (29%), Positives = 262/534 (49%), Gaps = 73/534 (13%)
Query: 419 DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 478
D + + +++AEA ++AKS+FLAT+SHEIRTPMNGV+GM +L+DT+L Q+ + +T
Sbjct: 440 DITELQQARQQAEAGNLAKSEFLATMSHEIRTPMNGVIGMTGLLLDTKLTEEQRIFAQTI 499
Query: 479 QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 538
+ S ++L+S+IN++LD +K+E+ +L+ E SF +R +++ V+ + S + + + ++L I
Sbjct: 500 RESSESLLSIINDILDLSKMEASRLDFEETSFEIRPLVEGVIDILSPRVRGRDIDLTCLI 559
Query: 539 SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 598
GDPGR RQ++ NL+GN++KFTE G I + V
Sbjct: 560 PAGARGVFRGDPGRLRQVLLNLVGNAVKFTESGTISIVVA-------------------- 599
Query: 599 TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 658
VAD +DG T L +V DTG GIP A+ R+F
Sbjct: 600 ------VAD-----------GRDGRTI-----------LTATVTDTGIGIPDAAKPRMFD 631
Query: 659 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 718
F Q S++R GG+G+GL+I K +V M GEIGF S GSTF F T +
Sbjct: 632 TFTQADASMARRFGGSGLGLAICKRIVDWMGGEIGFESREGKGSTFWFKVPILRSDETPS 691
Query: 719 EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSDQLQCL 775
E +E G+K LVVD + R ++ G +V + + ++ +
Sbjct: 692 EAAG----------GAELDGVKVLVVDDTQTNRDILRQQLEGWGARVTAFDSAAIAIEAI 741
Query: 776 SQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 835
+ + + ++++ + E +S L + L + + ++A S +
Sbjct: 742 RNANTAGQPFDAVVLDHLMPE----ISGLDLTVLLRSDPLTATLPLVMATSADLATLQPR 797
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMG---VGNKGNIRNWELPSMSLRHLLLGRKILIV 892
+ + I V++KP+R S L ++ R +G + I +P+ +IL+
Sbjct: 798 LERLRIDEVLVKPVRQSALLNAMLRCLGRPPIDTPQTI----VPAADFPIATTPLRILVA 853
Query: 893 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+DN +N +VA L + G + G +A E + ++D MD+QMP +DG
Sbjct: 854 EDNAINQQVAVGLLAKLGHRADVADDGAEAVERVA-AGEYDLVMMDMQMPHIDG 906
>gi|302786022|ref|XP_002974782.1| hypothetical protein SELMODRAFT_451443 [Selaginella moellendorffii]
gi|300157677|gb|EFJ24302.1| hypothetical protein SELMODRAFT_451443 [Selaginella moellendorffii]
Length = 823
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 164/542 (30%), Positives = 269/542 (49%), Gaps = 51/542 (9%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ E + KAE+A A+S+FLA +SHEIRTP+NGV+GM +L+DT+ Q++ + T + SG
Sbjct: 256 LAEARDKAESAAKARSEFLAVMSHEIRTPLNGVIGMASVLLDTDPTPDQEECLETIRTSG 315
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
+ L+S+IN++LD +K+++GKL + V NLR++++DV S+ + + + KGVEL V+
Sbjct: 316 ECLLSIINDILDFSKIDAGKLTIAPVPCNLRSLVEDVGSMLALRVEPKGVELVVHYDSPF 375
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
+ D R RQ++ NL+GNS KFT GHI V V L+ + T+ ++
Sbjct: 376 FAVSV-DTIRLRQVLINLIGNSCKFTHAGHILVNVSLLCKSCQKQLKATDFWECRS---- 430
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
+ +S+KG + + P + S+ D+G GI + +F F Q
Sbjct: 431 --CSKDVNSFKGRELDSDAKHVKPVEY-------FKFSISDSGIGIAEDKLGLLFEKFSQ 481
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
S +GGTG+GL++SK LV M GEI S +GSTF+F+ +E N
Sbjct: 482 CDQLTSNMYGGTGLGLAVSKSLVELMGGEIVVESREGVGSTFSFSIPL--EIDVVSEKNR 539
Query: 723 QQMNNQPNSVSSEFQGM-KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS- 780
Q+ P SS FQ + LV+D I +V I+ GI+ + D L +A+
Sbjct: 540 HQV---PLLYSSRFQARPRILVIDNHKITRQVMCEQIESWGIECQCSGDVASALKLLANR 596
Query: 781 -GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
+++ +LV E ++K + +++ F F+L + R N + +
Sbjct: 597 FHVAVVDNVLV--ETFQKKLQI--------KRIAEEFPGTKFILLKPV-GHRVN-AQEAY 644
Query: 840 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM-------------SLRHLLLG 886
+ +PLR S L +L + + + P++ + RH
Sbjct: 645 GFSCTLSRPLRQSTLKDALLKTFNLLGFKSFEEASRPALASSNRSKAGDKAQTRRH---- 700
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K+L+V+DN VN VA L G V G++A ++ P ++D FMD MP +DG
Sbjct: 701 PKVLVVEDNKVNQMVAIRLLNNLGCTVDVACNGQEAVSIVDKPVEYDLIFMDCHMPVLDG 760
Query: 947 YE 948
++
Sbjct: 761 FQ 762
>gi|117926677|ref|YP_867294.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117610433|gb|ABK45888.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 874
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 148/480 (30%), Positives = 245/480 (51%), Gaps = 71/480 (14%)
Query: 380 QKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQ 439
Q+ LL I S+ +V +F V +++ ++ ++E K++AEAA++AKS+
Sbjct: 322 QRKDGALLPIRLSVNEMVFEG--ERLFVGLVADVSERLQEERALIEAKEQAEAANMAKSR 379
Query: 440 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVE 499
FLA +SHE+RTPMNG+LGML +L D LD QQ+++ TAQ S +++++L+N++LD +K+E
Sbjct: 380 FLAVMSHEVRTPMNGILGMLGLLNDRRLDGQQQEWLATAQESAESMLTLLNDILDFSKIE 439
Query: 500 SGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITN 559
+G LELE +F+ IL V LF ++ KG+ L + +P + GDPGR RQ++ N
Sbjct: 440 AGHLELEQSAFSPEQILKGVHDLFLPRATAKGITLELEQGANLPAWVQGDPGRLRQVLMN 499
Query: 560 LMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 619
L+ N IKFT +G + + V + DS+ ++ E
Sbjct: 500 LVSNGIKFTHQGGVTMRVAQQAKREDSLLLQFE--------------------------- 532
Query: 620 QDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLS 679
V+D+G GIP + +++F PF Q+ PS SR +GG+G+GL+
Sbjct: 533 ---------------------VQDSGIGIPPQQLTQLFQPFNQLDPSYSRKYGGSGLGLA 571
Query: 680 ISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNE--HNSQQMNNQPNSVSSEFQ 737
I ++LV M GEI S P+ GS FTFTA FG + +E NS+Q +
Sbjct: 572 ICRHLVDLMGGEIRLESPPSGGSRFTFTARFGYAHAPQDEVLDNSEQ--------EVQLH 623
Query: 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK---IINMILVEQEV 794
G++ L+ + P V+ + R+G V+V + L+ L + ++++ + E +
Sbjct: 624 GVRVLLAEDSPTNQMVAVAMLARVGCHVDVAVNGLEVLEALTRAPYDLILMDLAMPEMDG 683
Query: 795 WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML 854
W+ + + LR + + L AN+ RA G I KP++ ++L
Sbjct: 684 WQAIARIRGMNA-PLRDIPI-----IALTANAYPEVRAQCLAAGAQ--DFITKPIQRNIL 735
Score = 41.6 bits (96), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
L G ++L+ +D+ N VA A L R G V G + E L +D MD+ MPE
Sbjct: 622 LHGVRVLLAEDSPTNQMVAVAMLARVGCHVDVAVNGLEVLEALTRA-PYDLILMDLAMPE 680
Query: 944 MDGYEML 950
MDG++ +
Sbjct: 681 MDGWQAI 687
>gi|414169325|ref|ZP_11425162.1| hypothetical protein HMPREF9696_03017 [Afipia clevelandensis ATCC
49720]
gi|410886084|gb|EKS33897.1| hypothetical protein HMPREF9696_03017 [Afipia clevelandensis ATCC
49720]
Length = 757
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 158/540 (29%), Positives = 253/540 (46%), Gaps = 89/540 (16%)
Query: 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 480
+ E + A AA+ AKS+FLA SHEIRTP+NG++GM ++L+DT L Q+ Y + +
Sbjct: 216 RALAEARDLANAANRAKSKFLAMASHEIRTPLNGIIGMSNLLLDTSLTAEQKTYAKAVKT 275
Query: 481 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 540
SG AL++LI+E+LD +++E+GK++LE F L A+++D+ L + ++Q + +E+A Y+ +
Sbjct: 276 SGDALMALIDELLDFSRIEAGKIDLEQRPFALAAMIEDITELLAPRAQARNLEIASYVDE 335
Query: 541 RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 600
R+P ++GD R RQ++ NL GN+IKFT+ G + +VE +
Sbjct: 336 RLPRQVLGDAARLRQVLLNLAGNAIKFTQSGGV---ALIVEPGI---------------- 376
Query: 601 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660
W G +F V DTG GI EAQ RIF F
Sbjct: 377 -----------WPGEISF---------------------IVRDTGIGIAPEAQQRIFREF 404
Query: 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 720
Q +R +GGTG+GLSIS +V RM G I S G+TF F+ ++
Sbjct: 405 EQASEGTARNYGGTGLGLSISDRIVRRMGGHIALESTEGHGATFAFSIPLAAANT----- 459
Query: 721 NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 780
N+ P ++ + G ++V P+ I A + ++R G Q +D ++
Sbjct: 460 -----NDAPAFIAPDLTGKSIMLVAPQSIEASLIARRLERWGAQTCTAAD--ISIAHALL 512
Query: 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
+ + +LV + DT +R + +F A R T S
Sbjct: 513 PERPWHAVLV--DCGSADTPWRDFGNAAVRH--SAHRIAMFTPAQ----RRDITPAMAAS 564
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKG---NIRNWELPSMSLRHLLL-------GRKIL 890
++KPLR AASL + V + + + P+ + H + IL
Sbjct: 565 YTGYLVKPLR----AASLAERLSVSSAAMLPELSGEDAPATDMAHSTMPPETASRALSIL 620
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ----FDACFMDIQMPEMDG 946
+ +DN +N + + L + G A V G++A E + +D MDIQMP++DG
Sbjct: 621 VAEDNEINALLIRSLLIKLGHAPVITTDGEQALESWIAADSAGTPYDVVLMDIQMPKLDG 680
>gi|158338777|ref|YP_001519954.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
gi|158309018|gb|ABW30635.1| two-component hybrid sensor and regulator histidine kinase,
putative [Acaryochloris marina MBIC11017]
Length = 826
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 157/526 (29%), Positives = 252/526 (47%), Gaps = 58/526 (11%)
Query: 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 480
++E + A+AA++AKS+FLA +SHEIRTPMN V+GM D+L DT LD QQD+V T +
Sbjct: 294 QALLESSQAAQAANLAKSEFLAMISHEIRTPMNAVIGMTDLLKDTHLDPHQQDFVETIRT 353
Query: 481 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 540
SG++L+++IN++LD +K+ESGKLELE F + +++ L + + K+ KG+ELA I
Sbjct: 354 SGESLLNIINDILDFSKIESGKLELELHPFPISTCVEEALDIVNSKATAKGLELAYLIEP 413
Query: 541 RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 600
P + GD R RQI+ NL+GN++KFT G + VT+ + + E LS
Sbjct: 414 GTPNHIQGDANRLRQILVNLLGNAVKFTADGEVIVTISARDVATAEMTPEVPLS------ 467
Query: 601 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660
L L+ V+DTG GI E Q ++F F
Sbjct: 468 ---------------------------------LHELLFEVKDTGIGIAPEHQQKLFQSF 494
Query: 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 720
Q+ SI+R +GGTG+GL+ISK L M G I S IGS+F FT + + +H
Sbjct: 495 CQLDSSITREYGGTGLGLAISKQLCELMGGTIWVESQVGIGSSFFFT-MAASALPGPEDH 553
Query: 721 NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 780
+ +FQ + L+V+ ++ +Q G+ + S L+ L+ +
Sbjct: 554 ---------RATEPQFQNKRVLIVEDNASTGQILCQQVQAWGLVPTLASSGLEALAWVKK 604
Query: 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
+ + ++ +S L N++ + L ++ A
Sbjct: 605 ERFDVAIADLQLPTMTWSRLLSELTQNHIH-------APLPIIGLCAIGESAAVWQYQPL 657
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
+ + + KP++ L +L +A+ ++ ++ + + +IL+ +DN +N K
Sbjct: 658 LSASLSKPVKQFRLYQTLLKALST-HQPDLPQPAISQPPPKPTPSSVRILVAEDNVINQK 716
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
V L R G V G + L +D MD+QMPEMDG
Sbjct: 717 VILKLLDRLGYQADLVTNGLEVLTALQ-EQSYDVVLMDVQMPEMDG 761
>gi|405363367|ref|ZP_11026321.1| two-component hybrid sensor and regulator [Chondromyces apiculatus
DSM 436]
gi|397089775|gb|EJJ20674.1| two-component hybrid sensor and regulator [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 915
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 172/550 (31%), Positives = 276/550 (50%), Gaps = 93/550 (16%)
Query: 420 YHGMMELKKKAEAA---DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 476
YH + +L++ +AA + AKS FLAT+SHEIRTPMN ++GM +L+D L Q+D+V
Sbjct: 224 YHDITDLERARKAAEAANQAKSLFLATMSHEIRTPMNAIIGMTGLLLDRALTEEQRDFVA 283
Query: 477 TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 536
T + S +AL++L+N+VLD +K+E+G+ E E F+LR ++ VL L + ++ +KG++L
Sbjct: 284 TIRQSSEALLTLLNDVLDFSKIEAGRFEAELRPFDLRQCVESVLDLLAVRASEKGLDLGC 343
Query: 537 YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSS 596
I+ +VP+ L+GD R RQ++ NL+GN++KFTE G V+V
Sbjct: 344 DIAPQVPQMLVGDASRIRQVLLNLVGNALKFTEHGGAVVSV------------------E 385
Query: 597 KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 656
++SG A+ W L SV+DTG GIP + ++ +
Sbjct: 386 GASVSG---AEGAAEWA-----------------------LTFSVQDTGPGIPEDRRAGL 419
Query: 657 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS--IPNIGSTFTFTAVFGNGS 714
F PF Q+ S+SR GGTG+GL+ISK LV M G + S I G+TF+FT +
Sbjct: 420 FQPFNQLDASVSRRFGGTGLGLAISKRLVEAMGGTLWVESEGIAGRGTTFSFTLRAQSAP 479
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 774
H Q+ QP QG + L+VD + ++ ++ G++ + +
Sbjct: 480 QAYAVHLRQE---QPL-----LQGRRVLIVDDNALFRRLLGRQLRAWGVEPVETASGPEA 531
Query: 775 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 834
LSQ +G+ +++L++ + D T +R+ G G L LL+ + R +
Sbjct: 532 LSQFQAGTG-YDVVLIDHHMPGMD---GTALAERIRREGQGL--PLLLLS---TPGRRGS 582
Query: 835 STDGVSIPSVIMKPLRSSMLAASL-------------QRAMGVGNKG---NIRNWELPSM 878
+G+ V+ +PL++S L +L R + G +R + S+
Sbjct: 583 PPEGL-FAGVLSRPLKTSQLYDALISCFSQHVPPVPGTRELQASRAGPFPGVRPGD--SV 639
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938
L IL+V+DN N K+A L+R G G++A + ++D MD
Sbjct: 640 PL-------DILLVEDNATNQKLALLVLERLGYRADVALNGRQALHAVS-QKRYDVVLMD 691
Query: 939 IQMPEMDGYE 948
+QMPEMDG E
Sbjct: 692 LQMPEMDGLE 701
>gi|304320035|ref|YP_003853678.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503]
gi|303298938|gb|ADM08537.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503]
Length = 796
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 169/543 (31%), Positives = 262/543 (48%), Gaps = 74/543 (13%)
Query: 416 VEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 475
VEE + E KAEAA +AKS FLA +SHEIRTPMNGVLGM ++LM TELD Q++ +
Sbjct: 245 VEERTADLEEAVTKAEAASLAKSAFLANMSHEIRTPMNGVLGMAELLMSTELDTYQRELI 304
Query: 476 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 535
T +SG +LV++IN++LD +K+E+GK L FNLR +++V +L +G++ +K +EL
Sbjct: 305 GTIMSSGTSLVTIINDILDFSKIEAGKFSLNEEPFNLREGIENVATLMAGRAAEKDLELF 364
Query: 536 VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 595
V +PE + D GR RQ+ITNL+GN+IKFT++G + + V
Sbjct: 365 VRYDPSLPEGVFTDGGRLRQVITNLVGNAIKFTDEGQVLIDV------------------ 406
Query: 596 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 655
T Q G T ++L +SV DTG GIP E
Sbjct: 407 ---------------------TGAQSGET----------VDLRISVTDTGIGIPPEKLEA 435
Query: 656 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS 715
IF F Q + SR + GTG+GL+I K ++ M G+IG S G+TF F +
Sbjct: 436 IFEKFEQADNTSSRMYEGTGLGLAICKTIIELMGGKIGVTSELGRGATF-FIDI------ 488
Query: 716 TSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQL 772
N + + +P ++E G + +VD ++ + ++ S +
Sbjct: 489 --NYKIDDRASLRPTIDTAELAGARIAIVDDNATNLRILSEQLAAWNTEIFAFSSGKEIF 546
Query: 773 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 832
Q L G + ++I+ + ++ E + L + + GF ++ +S+ + +
Sbjct: 547 QWLDSRGEGEALPDVIITDYQMPEMNGIELGLGI----RARTGFPPIPIIMLSSVCAPKE 602
Query: 833 NTSTDGVSIPSVIMKPLRSSMLAASLQRA-MGVGNKGNIRNWELP------SMSLRHLLL 885
S + + + ++KP+RS LA + A M G G++ S S +
Sbjct: 603 EGSK-SLPLSAWLVKPIRSLQLAEYVFEAKMKTGRFGDVEALAEAKADRSISASSDPDAI 661
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
IL+VDDN VN V LK + ++ G+ A E + D FMD+ MP MD
Sbjct: 662 CETILVVDDNLVNQLVITNMLKGWATEILTASNGEDAIEKF-SAYSPDIIFMDVSMPVMD 720
Query: 946 GYE 948
G E
Sbjct: 721 GLE 723
>gi|113474748|ref|YP_720809.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum
IMS101]
gi|110165796|gb|ABG50336.1| multi-sensor hybrid histidine kinase [Trichodesmium erythraeum
IMS101]
Length = 1384
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 179/574 (31%), Positives = 271/574 (47%), Gaps = 89/574 (15%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
K D + + + +A AA AKS+FLAT+SHEIRTP+N V+GM +L+DT L Q ++
Sbjct: 646 KTATDATDLAKARDEALAATRAKSEFLATMSHEIRTPINAVIGMTGLLLDTSLKSDQTEF 705
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
V T ++SG AL++LIN++LD +K+ES K +LE F+L L++ + L K ++G+EL
Sbjct: 706 VETIRSSGDALLTLINDILDFSKIESEKFDLEEHPFDLETCLEESIDLLVAKVSEQGLEL 765
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV----YLVEEVVDSIEVE 590
+I P +IGD R RQI+ NL+ N++KFT G + V+V +EE V ++ VE
Sbjct: 766 VYFIDPETPTIVIGDVTRVRQILVNLLSNAVKFTSDGEVLVSVSGRKLEIEENVQNLAVE 825
Query: 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 650
+S S D C W ++ + SV+DTG GIP
Sbjct: 826 N-ISES----------DTCDIWPAYE--------------------IQFSVKDTGIGIPA 854
Query: 651 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGE-----IGFVS--------I 697
+R+F F QV S +R +GGTG+GL ISK L M G+ +G V +
Sbjct: 855 NRMNRLFKRFSQVDSSTNREYGGTGLGLVISKRLAEMMGGQMWVESMGVVGGNPPATYRL 914
Query: 698 PNI-----------GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 746
P++ GSTF FT V + S N N N + + L+VD
Sbjct: 915 PDLYEHSAAVNEKSGSTFYFTIV--SKCSIQTVQNKFIQTNYVNGSQHKLVDKRILIVDD 972
Query: 747 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK----IINMILVEQEVWEKDTSVS 802
+ + G+ V + + L IA+ +K II+M + E + ++
Sbjct: 973 NSTNRTILLRQTESWGMIVRTAENANRALELIATENKFDVAIIDMKMPEIDGLSLGKKIT 1032
Query: 803 TLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL---- 858
+ +Q+ +L +S+ N S + SVI KP++ S L +L
Sbjct: 1033 EYPI---------YQNLPIILLSSLGQQEINFSDKLLG--SVINKPIKQSQLYEALLNIF 1081
Query: 859 --QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCV 916
Q N RN++ + + L L +IL+ DD+ VN KVA L+R G
Sbjct: 1082 SGQDVKVKFKNNNKRNYQTIPVLAKELPL--RILLADDHLVNQKVALRILQRMGYRADLA 1139
Query: 917 ERGKK--ATELLMPPHQFDACFMDIQMPEMDGYE 948
G + A +P +D MD+QMP MDG E
Sbjct: 1140 SNGLEVLAAVFRLP---YDVVLMDVQMPLMDGLE 1170
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 881 RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 940
+H L+ ++ILIVDDN+ N + + +G V E +A EL+ ++FD +D++
Sbjct: 959 QHKLVDKRILIVDDNSTNRTILLRQTESWGMIVRTAENANRALELIATENKFDVAIIDMK 1018
Query: 941 MPEMDGYEM 949
MPE+DG +
Sbjct: 1019 MPEIDGLSL 1027
>gi|168701075|ref|ZP_02733352.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
2246]
Length = 1034
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 158/528 (29%), Positives = 259/528 (49%), Gaps = 68/528 (12%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AEAA+ AK +FLA VSHE+RTPMN +LGM +++++TEL Q+ + T +++ L+
Sbjct: 386 KEAAEAANRAKDEFLANVSHELRTPMNAILGMTELVLETELREDQRQCLATVKSAADNLL 445
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++N++LD AK+E+GKLEL+ F+LRA++ D L + ++ G+EL + VP+ L
Sbjct: 446 GILNDLLDFAKIEAGKLELDPTEFSLRAVVGDTLRALAARAHRAGLELVGDVHPAVPDAL 505
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDPGR RQ++ NL+GN+IKFT G + V V E D ++
Sbjct: 506 VGDPGRLRQVLFNLIGNAIKFTPAGEVVVGV----EPADPSDI----------------- 544
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
GS F +V DTG GI E RIF F Q S
Sbjct: 545 --------------GGSAVRF------------TVRDTGIGIKPEKLDRIFHAFEQEDTS 578
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+IS LV M G IG S P GSTF FTA FG + S ++
Sbjct: 579 TTRRYGGTGLGLTISGRLVALMGGAIGVESEPGRGSTFAFTARFGRCARPSG----VELI 634
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI---ASGSK 783
P + +G++ LVVD ++ ++ + + D S + A +
Sbjct: 635 PTPEA----LRGLRVLVVDDNATNRRILSATLRNWQMSPDTAGDAADATSALWHAAGQGQ 690
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
+++++ + D +R+ +++ LL + S + + I +
Sbjct: 691 PYPLVVLDARMPGTD---GFSLAARIREAPALAATRIVLLTSGDRPDDPARSRE-LRIDA 746
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKG-NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 902
++KP+++ +L ++R M + R E P+ R L ++L+ +DN N ++
Sbjct: 747 HVLKPIQADLLLGVIRRVMRTSAETVPEREPEKPATGARAL----RVLVAEDNEFNARLV 802
Query: 903 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEML 950
L R G V V G++A + FD +D+ MPE++G+E++
Sbjct: 803 EELLVRRGHRVQVVADGRQALS-RAGTNDFDVLLLDVHMPELNGFEVV 849
>gi|269965226|ref|ZP_06179360.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
40B]
gi|269830212|gb|EEZ84439.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
40B]
Length = 932
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 187/656 (28%), Positives = 306/656 (46%), Gaps = 100/656 (15%)
Query: 306 GYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTL-N 364
GY+ D+ SL +L Q +F + S++ S + D ++ + N
Sbjct: 156 GYIAVELDLSSL------RLQQYQEVFSAFLVLVLGLGLASVFASRLMHDVTQPITHMKN 209
Query: 365 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVEE 418
D R+ + R + K L + I + ++ H I QAT + +E+
Sbjct: 210 VVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQ 269
Query: 419 DYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 475
+EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY+
Sbjct: 270 LEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQTDYL 329
Query: 476 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 535
+T + S L+++IN++LD +K+E+GKL LE + F+ R L++V++L + + +KG+E+
Sbjct: 330 QTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEIT 389
Query: 536 VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 595
+ + ++P L+GDP R +QI+TNL+GNSIKFTE+G+I V+V + + DS+E++
Sbjct: 390 LKVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQSGDSVELQ----- 444
Query: 596 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 655
V DTG GI Q++
Sbjct: 445 -------------------------------------------FMVRDTGIGISERQQAQ 461
Query: 656 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS 715
+F F Q SISR +GGTG+GL I++ LV +M GEI S + GSTF FT +
Sbjct: 462 LFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTVRLHSTEM 521
Query: 716 TSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 775
+E ++ G + L+++P A V++ + + GI V
Sbjct: 522 PMSELIEVEL----------LTGKQLLLIEPNMQAASVTQQILSQEGILV-------TYR 564
Query: 776 SQIASGSKIINMILVEQEVWE-KDTSVSTLFVNNLRKLG----CGFQSKLFLLANSISSS 830
S + + + + +L+ + D V T ++ +++ G S LA+ I +
Sbjct: 565 SSLPNNEEQYDYVLLNLAANQTHDAEVITPWIEQAKRMAPSVLLGTPSTELALADQIMTE 624
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
+ KPL L SL + V + + PS R L +L
Sbjct: 625 HH---------VQCLTKPLSRRKLLQSL-ISEHVESPPVLSAPITPSEGDR---LPLTVL 671
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VDDN NLK+ +A L+ V G++A L ++D FMDIQMP+MDG
Sbjct: 672 AVDDNPANLKLISALLRERVETVTACSNGQQAVNLAT-EKKYDLIFMDIQMPQMDG 726
>gi|428298374|ref|YP_007136680.1| PAS/PAC sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
gi|428234918|gb|AFZ00708.1| PAS/PAC sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
Length = 837
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 170/538 (31%), Positives = 250/538 (46%), Gaps = 77/538 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AEAA+ AKS FLA +SHEIRTPMNG++GM ++L+DT L Q DYV T + SG L+
Sbjct: 303 KQAAEAANFAKSDFLAVMSHEIRTPMNGIIGMTNLLLDTSLKPEQLDYVETIRNSGDTLL 362
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+ESGKLELE F+LR +++ L L + ++ KG+EL + P +
Sbjct: 363 TIINDILDFSKIESGKLELEKHPFDLRVCVEEALDLLASQATAKGIELIYKLESHTPTQI 422
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGD R RQII NL+ N++KFT G I VT+ +++
Sbjct: 423 IGDITRLRQIILNLVSNAVKFTTDGEILVTISTQQQI----------------------- 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
SP ++S D L ++ DTG GIP + R+F F QV S
Sbjct: 460 ------------------SPEENSQHD-CELQFAISDTGVGIPRDRLDRLFQAFSQVDVS 500
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I K L M G + S GSTF FTA+ ++ N
Sbjct: 501 TTRRYGGTGLGLAIGKRLSEIMGGRMWVESEEGKGSTFYFTAILQVHPASFN-------- 552
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+ + E K L+ + +Q +G+ V+ L + S I
Sbjct: 553 --ISHIEPELTNKKLLLAVGNAKLRNCLTWQLQNMGLDVKSSESSNMTLHYMQENSFQIA 610
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS--IPSV 844
+I ++ S +N K+ + L S + N ++ +
Sbjct: 611 IIDID--------SPDFHHINLTEKIRAIPNQRDLTLIMLSSQGKQNLEHQPIATEFTAF 662
Query: 845 IMKPLRSSMLAAS-LQRAMGVGNK--GNIRN----------WELPSMSLRHL-LLGRKIL 890
+ KPLR L + LQ A G+ +K GN LP + L KIL
Sbjct: 663 LQKPLRHYQLHNTLLQVARGIWSKQSGNCSTKILSYSRTEPQNLPVHDHKFAEKLPLKIL 722
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+V+D VN K+A L++ G G +A + +D FMD+QMPEMDG E
Sbjct: 723 LVEDGLVNQKIALKLLEKLGYQADVANNGLEAVKATQ-KQLYDVVFMDVQMPEMDGLE 779
>gi|254445248|ref|ZP_05058724.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
gi|198259556|gb|EDY83864.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
Length = 800
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 169/526 (32%), Positives = 264/526 (50%), Gaps = 76/526 (14%)
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
+AE A+ AKS FLA++SHEIRTPMN V+G+ +L++T++D Q+DY++T +ASG +L+ L
Sbjct: 280 EAELANQAKSSFLASMSHEIRTPMNAVIGLTGVLLETQIDDDQRDYLQTIRASGDSLLVL 339
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
IN++LD +K+ES K+ELE + R +++ L L + K+ KG+EL S+ +P ++G
Sbjct: 340 INDILDFSKIESDKMELEERPIDPRCCVEEALELLAEKASSKGLELCYEASEDIPFGILG 399
Query: 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
D R RQI+ NL+GN+IKFTEKG I V ++T + +N + + V
Sbjct: 400 DATRLRQILVNLIGNAIKFTEKGQIEVL------------LKTRETDQRNCVIEFTV--- 444
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
+D+G GIP + QSR+F F QV S +
Sbjct: 445 ---------------------------------KDSGIGIPADKQSRLFKSFSQVDSSTT 471
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 728
R +GGTG+GL+ISK L M GE+ S GS+F FT V +S S + +
Sbjct: 472 RKYGGTGLGLAISKKLTELMGGEMRVESSEGSGSSFIFTIV---SPVSSPVVYSPDFDER 528
Query: 729 PNSVSSEFQGMKALVVDPRPIRAK--VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
S+ S G LVV P + + ++ H + +Q DQ L+Q +
Sbjct: 529 GESLVS---GKSLLVVQPNEVIGEKITAQLHRWKAKVQFAATIDQATELAQ----AHKFA 581
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+ LV+Q ++T L + C K+ L+ + A T D +
Sbjct: 582 IALVDQRYGAEET--KRLLQTARSESAC---PKIRLIEIAPFGKTAPTERDA----QTLS 632
Query: 847 KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR----KILIVDDNNVNLKVA 902
KP++ S L +L +++ +K + RN + + H LG +IL+ +DN +N KV
Sbjct: 633 KPVKPSSLLDALAKSL--QSKNHTRNATKDAKTEDHAKLGENCPLRILMAEDNKINQKVV 690
Query: 903 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
LK+ ++ G + + L +Q+D MD+QMP MDGYE
Sbjct: 691 KLVLKQLSYSIDVANDGLEVLDKL-DQNQYDVVLMDVQMPNMDGYE 735
>gi|91227847|ref|ZP_01262020.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
12G01]
gi|91188357|gb|EAS74653.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
12G01]
Length = 932
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 187/656 (28%), Positives = 306/656 (46%), Gaps = 100/656 (15%)
Query: 306 GYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTL-N 364
GY+ D+ SL +L Q +F + S++ S + D ++ + N
Sbjct: 156 GYIAVELDLSSL------RLQQYQEVFSAFLVLVLGLGLASVFASRLMHDVTQPITHMKN 209
Query: 365 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVEE 418
D R+ + R + K L + I + ++ H I QAT + +E+
Sbjct: 210 VVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQ 269
Query: 419 DYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 475
+EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY+
Sbjct: 270 LEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSNSQMDYL 329
Query: 476 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 535
+T + S L+++IN++LD +K+E+GKL LE + F+ R L++V++L + + +KG+E+
Sbjct: 330 QTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEIT 389
Query: 536 VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 595
+ + ++P L+GDP R +QI+TNL+GNSIKFTE+G+I V+V + + DS+E++
Sbjct: 390 LKVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVSVEMRSQSGDSVELQ----- 444
Query: 596 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 655
V DTG GI Q++
Sbjct: 445 -------------------------------------------FMVRDTGIGISERQQAQ 461
Query: 656 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS 715
+F F Q SISR +GGTG+GL I++ LV +M GEI S + GSTF FT +
Sbjct: 462 LFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTVRLHSTEM 521
Query: 716 TSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 775
+E ++ G + L+++P A V++ + + GI V
Sbjct: 522 PMSELIEVEL----------LTGKQLLLIEPNMQAASVTQQILSQEGILV-------TYR 564
Query: 776 SQIASGSKIINMILVEQEVWE-KDTSVSTLFVNNLRKLG----CGFQSKLFLLANSISSS 830
S + + + + +L+ + D V T ++ +++ G S LA+ I +
Sbjct: 565 SSLPNNEEQYDYVLLNLAANQTHDAEVITPWIEQAKRMAPSVLLGTPSTELALADQIMTE 624
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
+ KPL L SL + V + + PS R L +L
Sbjct: 625 HH---------VQCLTKPLSRRKLLQSL-ISEHVESPPVLSAPITPSEGDR---LPLTVL 671
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VDDN NLK+ +A L+ V G++A L ++D FMDIQMP+MDG
Sbjct: 672 AVDDNPANLKLISALLRERVETVTACSNGQQAVNLAT-EKKYDLIFMDIQMPQMDG 726
>gi|373950837|ref|ZP_09610798.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
gi|386323330|ref|YP_006019447.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
gi|333817475|gb|AEG10141.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
gi|373887437|gb|EHQ16329.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
Length = 1784
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 162/528 (30%), Positives = 262/528 (49%), Gaps = 69/528 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++A+AA AK FLA +SHEIRTPMN ++GM + + TELD Q++YV + + ++L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+GKL++++V F L +L+D+ +FS K+ K +EL ++ VP L
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYL 1152
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R Q++ NLM N+IKFTE+G + +++ LVE+ D + + + S L+ A
Sbjct: 1153 LGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQA 1212
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
K FK+F Q DT S
Sbjct: 1213 ------KLFKSFTQ---------------------ADT---------------------S 1224
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I K LV M G+IG S GSTF FT H S +
Sbjct: 1225 TTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKL---------HIS---D 1272
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI---ASGSK 783
Q + E +GM LVVD + R ++ +G +V+ V + +S+ A
Sbjct: 1273 GQKLVLEQELEGMSVLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAISRCLLQAYEVA 1332
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
+I+ + + E + + + L+ ++ + T + +++
Sbjct: 1333 LIDWKMPNMDGLETARQIQLQAQSQSQSQPQSHPQPKILMVSAHADHEFLTQIEQLALAG 1392
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNI---RNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
I KP+ +S L + A +G +G + R E + L L G++IL+V+DN +NL+
Sbjct: 1393 YISKPISASRLLDGIMNA--IGREGILPVRRRTEELAPQLLVPLQGKRILLVEDNEMNLE 1450
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VA+ L++ G + G+ A + L H FD MD QMP MDGY+
Sbjct: 1451 VASEFLEQVGIILSIATNGQIALDKLSQQH-FDLVLMDCQMPVMDGYQ 1497
>gi|254477960|ref|ZP_05091345.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
gi|214028545|gb|EEB69381.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
Length = 760
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 154/535 (28%), Positives = 257/535 (48%), Gaps = 67/535 (12%)
Query: 417 EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 476
+E + + +K A+ A+ AKS+FLA +SHEIRTPMNGV+GM +++++T+LD Q+ Y
Sbjct: 220 DEREFALEDARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILETDLDDDQKMYAE 279
Query: 477 TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 536
T SG AL+++IN++L+ +K+E+GK+EL+ FNL+ ++DV++L S K+ +K VE+ +
Sbjct: 280 TISKSGSALLTIINDILNFSKIEAGKMELDRAPFNLQTAIEDVVTLLSPKAAEKNVEVTL 339
Query: 537 YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSS 596
+PE GD GR RQI+TN+ GN++KFT G++++ V S
Sbjct: 340 RYDPGLPEFFEGDVGRIRQILTNIAGNAVKFTSAGYVYIEV------------------S 381
Query: 597 KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 656
+T GY +L +SV+DTG GIP + + I
Sbjct: 382 GHTAGGYS-------------------------------DLRISVKDTGTGIPADQLNSI 410
Query: 657 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSST 716
F F QV + +R GTG+GL+IS L+G M G + S+ GSTFT
Sbjct: 411 FNAFEQVDGAATRNFEGTGLGLAISTRLLGMMGGTVSVTSVLGEGSTFTVELPL-----K 465
Query: 717 SNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQ 773
EH QP +G+ LVVD + + + G+ V+ L+
Sbjct: 466 VREH-----QRQPRVDEVSLEGLNVLVVDDLELNRIILNERLDTWGVNTVAVASGDAALE 520
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
L + ++IL + ++ D + ++ + + ++ +S+ ++
Sbjct: 521 TLLDARHEGRSFDIILQDFQMPGMDGHELARRIRDIPE----YVDLPIVILSSVENTIDQ 576
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
+ + + V +KP+R+S L A + +A+ G+ + K+L+ +
Sbjct: 577 YTRERLGRCEVALKPVRASQLRAVMSKALNGGSPARPGKLSTAARGAAPAQPQLKLLLAE 636
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
DN N V LK V+ G+ A +L H+ D MD+ MP+ DG E
Sbjct: 637 DNKTNQLVVTRMLKSAPIEVIVASNGEDAVDLF-KAHRPDIVLMDMMMPQKDGIE 690
Score = 43.1 bits (100), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ----FDACFMDI 939
L G +L+VDD +N + L +G V V G A E L+ FD D
Sbjct: 480 LEGLNVLVVDDLELNRIILNERLDTWGVNTVAVASGDAALETLLDARHEGRSFDIILQDF 539
Query: 940 QMPEMDGYEM 949
QMP MDG+E+
Sbjct: 540 QMPGMDGHEL 549
>gi|390949067|ref|YP_006412826.1| signal transduction histidine kinase [Thiocystis violascens DSM
198]
gi|390425636|gb|AFL72701.1| signal transduction histidine kinase [Thiocystis violascens DSM
198]
Length = 690
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 160/523 (30%), Positives = 250/523 (47%), Gaps = 70/523 (13%)
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489
AEAA+ AKSQF+A +SHEIRTPMNG+LGM ++ +DTEL TQ+DY+ ++S + L++++
Sbjct: 171 AEAANAAKSQFIANMSHEIRTPMNGILGMTELALDTELTPTQRDYLNIVKSSAETLLTIL 230
Query: 490 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 549
N++LD A++++GK+ +EA+ F+L ++ + L ++++KG+EL + +P +GD
Sbjct: 231 NDILDFARLDAGKMHIEAIPFDLSELVAETLKAIGMRARNKGLELVCDLPADLPRQSLGD 290
Query: 550 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 609
PGR RQ++ NL N+IKFT G I V V
Sbjct: 291 PGRLRQVLMNLCDNAIKFTPTGEIEVKVR------------------------------- 319
Query: 610 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669
+SP + D I ++V DTG GIP + IF F Q +I+R
Sbjct: 320 --------------SSPNRDPRLDDIQ--ITVRDTGIGIPAAKLAEIFEAFSQADATITR 363
Query: 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 729
GGTG+GLSIS L+ M G+I S GS F T +++ ++
Sbjct: 364 QFGGTGLGLSISARLLELMGGQIRVESREGQGSAFHLTLPLARIEPSASSPPPSPWRHK- 422
Query: 730 NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK---IIN 786
+ALVVD PI + ++ G+ + L+ SG +
Sbjct: 423 ----------RALVVDDHPINRETLAGWLRHWGLTTLEAGSGQEALALARSGQSSRTPFD 472
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
++L++ + + D L G Q ++ +L+ S A D + I + +
Sbjct: 473 LLLLDARMPDMD---GLELAARLVAEGLIAQGRMVMLSCGGSPGNAQRGQD-LGIAATLT 528
Query: 847 KPLRSSMLAASLQRAMG-VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905
KP L +L R + + + + P R G +IL+V+DN +N K+A
Sbjct: 529 KPATPRELIETLTRLLDPMVSAASPPPQTPPPQDERQ---GARILLVEDNPINQKLARKL 585
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L+R+G V E GK A +L P FD MD+QMP MDG E
Sbjct: 586 LERWGHEVTLAENGKIAVDLF-EPSAFDLVLMDMQMPVMDGIE 627
>gi|420374930|ref|ZP_14874855.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri 1235-66]
gi|391315046|gb|EIQ72580.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri 1235-66]
Length = 888
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 168/525 (32%), Positives = 257/525 (48%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 253 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 312
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L + S DKG+EL + I + VP+ +
Sbjct: 313 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 372
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 373 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 429
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 430 DQSRLFQAFR---------------------------------------------QADAS 444
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 445 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HISLDLN 491
Query: 727 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN +S G + V+P A+ + L I E + + S A
Sbjct: 492 --PNVISDRSTTRCLAGKRLAYVEPNATAAQCT------LDILSETPLEVIYSPSFSALP 543
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
++ +++L+ V T L + + R + LLA +
Sbjct: 544 AEHYDILLLGVPV----TFHEPLTMQHERLASAAAMTDFLLLALPCHAQINAEKLKQGGA 599
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + N+G +LP S + ++ VDDN NLK+
Sbjct: 600 AACLLKPLTSTRLLPALTEYCHL-NQG--AELQLPDES----KIAMTVMAVDDNPANLKL 652
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ V + G++A + QFD MDIQMP+MDG
Sbjct: 653 IGALLEDKVQHVELCDSGQQAMD-RAKQMQFDLILMDIQMPDMDG 696
>gi|409203280|ref|ZP_11231483.1| sensor protein [Pseudoalteromonas flavipulchra JG1]
Length = 1103
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 182/578 (31%), Positives = 267/578 (46%), Gaps = 113/578 (19%)
Query: 407 QATVNRIAKVEEDYHGMMELKKK-------AEAADVAKSQFLATVSHEIRTPMNGVLGML 459
Q + +++D +E KK+ AE AKS+FLA++SHEIRTPMNGV+GML
Sbjct: 526 QNQLTAFVGIQQDITAAVEAKKELEQAKQAAEQGAQAKSEFLASMSHEIRTPMNGVIGML 585
Query: 460 DMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 519
+L D L TQ V A S K+L++LIN++LD +K+E+GKLELE++ F++RA+L ++
Sbjct: 586 SLLEDEHLTQTQLHKVSLAMGSAKSLLNLINDILDFSKIEAGKLELESLDFDVRALLGEL 645
Query: 520 LSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL 579
+ + ++Q KG+EL + ++ + GDP R RQII NL+ N+IKFTE+G I + +
Sbjct: 646 IESVALQAQKKGLELILDVTQLEKPLVQGDPSRIRQIIINLISNAIKFTEQGEIIIRAWF 705
Query: 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIV 639
EV+ +L R H
Sbjct: 706 S-------EVDNKL--------------RFH----------------------------C 716
Query: 640 SVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699
SVEDTG GIP + R+F F QV S +R +GGTG+GL+I + L M G+I S
Sbjct: 717 SVEDTGIGIPEDKADRLFAKFSQVDASTTRKYGGTGLGLAIVRQLCELMDGDIAVSSRFG 776
Query: 700 IGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQ 759
GS F F +G N Q + + QG+K L+VD ++
Sbjct: 777 HGSQFEFFVTLIHGD-----------NTQFEAAKIDLQGIKILLVDDNLSALTSLESQLR 825
Query: 760 RLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNL-------RKL 812
G V S +Q LS L E E +++D +V + + ++ +L
Sbjct: 826 HWGADVSKASSGIQALS------------LCEAE-YQRDKNVFDIALLDMTLRGMSGEQL 872
Query: 813 GCGFQSKL-FLLANSISSSRANTSTDGV-----SIPSVIMKPLRSSMLAASLQRAMGVGN 866
G ++ + F I ++ T DG KP+ + L +L +
Sbjct: 873 GAALKNDMRFKAIKLIMMTQMGTKGDGQFYAERGYSGYFPKPVTTKDLFDALTI---LAE 929
Query: 867 KGNIRNWELPSMSLRHLLLGRK-------------ILIVDDNNVNLKVAAAGLKRYGAAV 913
G P ++ +L L RK IL+V+DN VN VA + LK+ G
Sbjct: 930 DGKALANAKPLVTSHYLKLVRKANETEFTWPKPCRILLVEDNKVNQVVALSMLKKLGITH 989
Query: 914 VCV-ERGKKATELLMPPH---QFDACFMDIQMPEMDGY 947
+ V E G A ELL QF+ MD QMPEMDGY
Sbjct: 990 IEVAENGLLAIELLKSHQDECQFELILMDCQMPEMDGY 1027
>gi|322418861|ref|YP_004198084.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
gi|320125248|gb|ADW12808.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
Length = 823
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 169/556 (30%), Positives = 266/556 (47%), Gaps = 82/556 (14%)
Query: 396 LVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGV 455
L +A G + + VNR ++E+ + + + A++A+ AKS FLA +SHEIRTPM GV
Sbjct: 147 LEVAERTGEL--SAVNR--QLEQSLESVRQAMQSAQSANRAKSDFLAQMSHEIRTPMYGV 202
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
LGM ++L+ T+L Q YV T + SG+AL+S+IN +LD +K+E+G++ELE + F+LR +
Sbjct: 203 LGMTELLLGTDLTKEQSRYVETVRRSGEALLSIINNILDFSKIEAGRMELETIPFDLRQL 262
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
D ++F+ + KG+EL++ + +P +GDPGR RQ++ NL+GN++KFT KG + +
Sbjct: 263 ASDAAAIFAEDAARKGLELSLELERGLPRMFLGDPGRLRQVMVNLLGNAVKFTLKGGVRL 322
Query: 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 635
T+ L EE L+
Sbjct: 323 TLKLAEEPA-------------------------------------------------LV 333
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
+ V EDTG GI EA+ RIF F Q S++R +GGTG+GL+I++ L M G +
Sbjct: 334 RISV--EDTGIGIAPEARLRIFNQFAQGDESMTRKYGGTGLGLAIARQLTELMGGVLDVE 391
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNS--VSSEFQGMKALVV-DPRPIRAK 752
S P GS F+FT Q P S +G + L+ D R
Sbjct: 392 SEPGRGSCFSFTVRL------------QLHEEAPRSERCCVALRGKRVLLATDDEETREG 439
Query: 753 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 812
VS + G+ +E D L ++ + ++ L++ + D +R +
Sbjct: 440 VSE-QLFSWGVDLECAGDAPAALCRLVTAP--FDLALLDHRIAGTD---GIELAAAIRTV 493
Query: 813 GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRN 872
G +L LL S + N+ + + + + LR L +L A+G+ +
Sbjct: 494 PAGRSVRLLLLTESAEEA-GNSRSAELEVSRYPRRLLRQEGLYRALITALGMDDAERREA 552
Query: 873 WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF 932
R R++L+V+DN VN +V L+ G V VE G A + +++
Sbjct: 553 GCCADRPPRP----RQVLLVEDNPVNQEVGKGMLESLGCRVKVVEDGLAAVNEVR-QNRY 607
Query: 933 DACFMDIQMPEMDGYE 948
D FMD QMP MDG E
Sbjct: 608 DLVFMDCQMPVMDGLE 623
>gi|126175702|ref|YP_001051851.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
gi|386342450|ref|YP_006038816.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS117]
gi|125998907|gb|ABN62982.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
gi|334864851|gb|AEH15322.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS117]
Length = 1784
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 162/528 (30%), Positives = 262/528 (49%), Gaps = 69/528 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++A+AA AK FLA +SHEIRTPMN ++GM + + TELD Q++YV + + ++L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+GKL++++V F L +L+D+ +FS K+ K +EL ++ VP L
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYL 1152
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R Q++ NLM N+IKFTE+G + +++ LVE+ D + + + S L+ A
Sbjct: 1153 LGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQA 1212
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
K FK+F Q DT S
Sbjct: 1213 ------KLFKSFTQ---------------------ADT---------------------S 1224
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I K LV M G+IG S GSTF FT H S +
Sbjct: 1225 TTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKL---------HIS---D 1272
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI---ASGSK 783
Q + E +GM LVVD + R ++ +G +V+ V + +S+ A
Sbjct: 1273 GQKLVLEQELEGMSVLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAISRCLLQAYEVA 1332
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
+I+ + + E + + + L+ ++ + T + +++
Sbjct: 1333 LIDWKMPNMDGLETARQIQLQAQSQSQSQPQSHPQPKILMVSAHADHEFLTQIEQLALAG 1392
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNI---RNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
I KP+ +S L + A +G +G + R E + L L G++IL+V+DN +NL+
Sbjct: 1393 YISKPISASRLLDGIMNA--IGREGILPVRRRTEELAPQLLVPLQGKRILLVEDNEMNLE 1450
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VA+ L++ G + G+ A + L H FD MD QMP MDGY+
Sbjct: 1451 VASEFLEQVGIILSIATNGQIALDKLSQQH-FDLVLMDCQMPVMDGYQ 1497
>gi|94263808|ref|ZP_01287614.1| PAS [delta proteobacterium MLMS-1]
gi|93455819|gb|EAT05986.1| PAS [delta proteobacterium MLMS-1]
Length = 1049
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 213/387 (55%), Gaps = 43/387 (11%)
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
EL +AEAA+ AKS+FLA +SHEIRTPMNG +GM +L+DTEL Q+ Y ++SG++
Sbjct: 509 ELAVQAEAANHAKSEFLANMSHEIRTPMNGFIGMTMLLLDTELTEEQRQYAGIVKSSGES 568
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L+ LIN++LD +K+E+GKLE+E + F+L+++LDD + + K+ DKG+EL VP
Sbjct: 569 LLVLINDILDFSKIEAGKLEIETLDFDLQSLLDDFAATTAFKTHDKGLELLCAAEPDVPV 628
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 604
L GDPGR RQI+TNL+GN++KFTEKG + + V V E
Sbjct: 629 QLSGDPGRLRQILTNLVGNALKFTEKGEVAIRVKTVGEA--------------------- 667
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
C + G + N D S + L SV DTG GIP + +F F QV
Sbjct: 668 ----CQT--GQTSLNDDAS-----------LLLRFSVRDTGIGIPADKIGMLFQQFTQVD 710
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG-NGSSTSNEHNSQ 723
S +R +GGTG+GL+ISK+L M GEIG S+ GS F FTA G + S +
Sbjct: 711 ASTTRKYGGTGLGLAISKHLAEMMGGEIGVESVEGQGSEFWFTARLGLRSQAASGQTPPI 770
Query: 724 QMNNQPNSVSSEFQGMKA--LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
+ +F KA L+ + +V++ +++LG+ + V++ + + + +
Sbjct: 771 ATCHTAREALPDFTHRKARILLAEDNITNQQVAQGILKKLGLSADAVANGREAIEALKTL 830
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNN 808
+++L++ ++ E D +T + N
Sbjct: 831 P--YDLVLMDVQMPEMDGLEATRQIRN 855
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMD 945
+IL+ +DN N +VA LK+ G + V G++A E L +P +D MD+QMPEMD
Sbjct: 789 RILLAEDNITNQQVAQGILKKLGLSADAVANGREAIEALKTLP---YDLVLMDVQMPEMD 845
Query: 946 GYE 948
G E
Sbjct: 846 GLE 848
>gi|406877798|gb|EKD26920.1| Sensor protein [uncultured bacterium]
Length = 1019
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 156/525 (29%), Positives = 259/525 (49%), Gaps = 71/525 (13%)
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
+A A+ AK+ FLA +SHEIRTP+NG+LG L++ +T L Q +Y+ A S +L+SL
Sbjct: 502 EASRANTAKTTFLANMSHEIRTPINGILGFLNLFKNTPLSHEQTEYINNALISTHSLLSL 561
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
IN++LD K+ESG++ELE++ FN +I++ + + +K +E+ Y+ + LIG
Sbjct: 562 INDILDFTKIESGRMELESIPFNPVSIIESSAKSLASTAHEKDLEILSYVDPNLHFNLIG 621
Query: 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
DP RF+QII NL+GN+IKFT+ G IF++ + + D++ V+T+
Sbjct: 622 DPNRFKQIIINLLGNAIKFTQIGEIFISSSITRDSDDTVVVQTK---------------- 665
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
V DTG GI R+F F QV PS
Sbjct: 666 --------------------------------VTDTGIGISQNHIQRLFHVFSQVDPSTH 693
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS-QQMNN 727
R +GG+G+GL+ISK + M GEI SI G+TFTF+ F + + + +++NN
Sbjct: 694 RKYGGSGLGLAISKRFIDLMGGEISVESIEGQGTTFTFSIPFRKVLGDNKKSQTIEKINN 753
Query: 728 QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI---ASGSKI 784
+ + ++ L+ + +I +G + S Q + + I S
Sbjct: 754 CDILILTNNNSVRNLL-----------KAYINFMGCPATIFSSQEEIKTHIQNNRLNSNR 802
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK-LFLLANSISSSRANTSTDGVSIPS 843
N+++V++ V +K +++++ + K LFLL ++ + T+ + +
Sbjct: 803 NNLLIVDEPVNDKS------YLDSIDDITRNTNIKSLFLLYSNSKRLQTITAANVIHRHL 856
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
++KPL L + ++N + ++ L IL+ +DN +NLK+
Sbjct: 857 YLIKPLNFLDLYKIISSNKPETVFSPLKNIKTETVIKEKLYKDINILVAEDNKINLKLIV 916
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L+++G VV VE GK A + + F+A MD MPEMDGYE
Sbjct: 917 ILLRKFGFNVVAVENGKLAYDAFLKS-DFNAIIMDCHMPEMDGYE 960
>gi|114564655|ref|YP_752169.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
400]
gi|114335948|gb|ABI73330.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
400]
Length = 1236
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 170/580 (29%), Positives = 270/580 (46%), Gaps = 63/580 (10%)
Query: 367 DPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMEL 426
DP +E+ R + K +S + T I + + + ++E
Sbjct: 652 DPVGTYEIEFRMRGKNGLYFWVLSRGRAVEFSEDGCSKRMLGTHKDITRQKSNEVALLEA 711
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AE A++ KS+FLA +SHEIRTPMN ++GML + T L V QQDY+ A S ++L+
Sbjct: 712 KQDAELANMYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTVQQQDYLNKAGFSAQSLL 771
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN++LD +K+E+GKLELE V+F L +LD V+ + + K+Q+KGVEL +Y L
Sbjct: 772 RIINDILDFSKIEAGKLELERVAFPLDKVLDHVIDINAIKAQEKGVELLLYAPVTAGLIL 831
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R Q+I NL+ N++KFT+ G E EL V
Sbjct: 832 YGDPLRLGQVIVNLLSNAVKFTQTG------------------EVELGCED-------VG 866
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+R D I + V DTG GI + Q+ +F F Q S
Sbjct: 867 ER-----------------------DDRITMKFWVRDTGIGISKDQQAMLFDAFSQADGS 903
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GLSISK+LV M G + S GS F+FT F +++
Sbjct: 904 TTRKYGGTGLGLSISKHLVSMMGGTMQVESELGSGSIFSFTISF---------EIAEEQV 954
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
P V + + LVVD P ++ + V + L + K ++
Sbjct: 955 IAPLVVPEQLNNLTTLVVDDNPSALQIYSTLMTDFSFGVNTADSGQKALDILR--KKPVD 1012
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
++L++ + E + ++ + G + + +L + ++ + S+ +V+
Sbjct: 1013 LLLLDWMMPEMNGCDVIKAIDEMVADGSIAKRPIIILMTAYAAEPLDHELQKNSVYAVLQ 1072
Query: 847 KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 906
KP ++S L + A K N + + + L +L+V+DN +N +VA+ L
Sbjct: 1073 KPFKASALFDEIINAFAKEPKLNAMPVIIEAEPAKASGL---VLLVEDNFINQQVASELL 1129
Query: 907 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K G VV + G+ A +++ FDA MDIQMP MDG
Sbjct: 1130 KSAGYEVVIADNGQVALDVI-DSKPFDAVLMDIQMPVMDG 1168
>gi|392424058|ref|YP_006465052.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase,Hpt domain-containing protein
[Desulfosporosinus acidiphilus SJ4]
gi|391354021|gb|AFM39720.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase,Hpt domain-containing protein
[Desulfosporosinus acidiphilus SJ4]
Length = 772
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 158/518 (30%), Positives = 247/518 (47%), Gaps = 65/518 (12%)
Query: 434 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVL 493
+++KS FLA +SHEIRTPMNG++G L++L + Q++Y+R A+++ L+ +IN++L
Sbjct: 148 NISKSLFLANMSHEIRTPMNGIMGFLELLNMSNPSTEQKEYIREAKSASAVLLYVINDIL 207
Query: 494 DQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRF 553
D +K+E+GKL +E F R ++D +SL K+ +K +EL I+ VPE +IGD R
Sbjct: 208 DFSKIEAGKLTMEESCFKTRTAIEDAVSLHVHKAFEKNLELHSMINANVPEEVIGDAQRL 267
Query: 554 RQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK 613
RQ++ NL+GN++KFTEKG I VT VD IE E E++ K
Sbjct: 268 RQVLNNLIGNAVKFTEKGEISVT-------VDCIEEEDEIALLK---------------- 304
Query: 614 GFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673
++DTG GI E ++F F QV S +R +GG
Sbjct: 305 -------------------------FEIKDTGIGISQEDFQKLFQSFNQVDSSTTRKYGG 339
Query: 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVS 733
TG+GL+ISK LV M+G I F SI GS F F F + N V
Sbjct: 340 TGLGLAISKELVSLMRGNIEFKSILGEGSNFKFDVRFKIAKRVPDH----------NYVF 389
Query: 734 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQE 793
E G+ L++D P +++ ++ +G +V D + ++ I S + I +
Sbjct: 390 KELAGVNILIIDDNPSNRRIAISYLGGMGCKVFEAKDPGEAITTIISKVSTRDKIDIALI 449
Query: 794 VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 853
+ +L+ + KL LL ++ S A + + ++KP++
Sbjct: 450 DYRMPGMSGFELATSLKAIPFASDIKLILLTSAAQSGGAKEAKQ-LGFAGYLIKPIKRDD 508
Query: 854 LAASLQRAMGVGNKGN---IRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYG 910
L + +G+ ++ N I + L H KIL+V+DN +N K+ A LK
Sbjct: 509 LLNCIAIVLGLKSEENNEPIVTKYVVQEGLDH--RKPKILLVEDNEINRKIVTAVLKTRD 566
Query: 911 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
V G A + + +D MD QMP MDGY+
Sbjct: 567 ITCDVVINGLDAYQAV-KKKDYDIVLMDCQMPVMDGYK 603
>gi|440683654|ref|YP_007158449.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428680773|gb|AFZ59539.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 1342
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 165/540 (30%), Positives = 263/540 (48%), Gaps = 90/540 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++AE+A+ AKSQFLA +SHEIRTPMN V+GM +L+DT LD QQD + T ++SG AL+
Sbjct: 658 KRQAESANRAKSQFLAMMSHEIRTPMNAVIGMTGLLLDTNLDSQQQDLITTIRSSGDALL 717
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+ES +L LEA F+LR L++ L L + ++ K +EL ++ + P T+
Sbjct: 718 SIINDILDFSKIESNQLNLEAQPFSLRNCLEESLDLLASQAATKKIELIYLLTPQTPNTI 777
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGD R RQI NL+ N++KFT G + VT ++ + T T +P
Sbjct: 778 IGDITRLRQIFVNLLSNAVKFTNIGEVIVTA-----TAKALAIVT-------TAPTFP-- 823
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
L + +++DTG GIP E R+F PF QV S
Sbjct: 824 ---------------------------LYEIEFAIKDTGIGIPPEKIDRLFQPFSQVDSS 856
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG--------NGSSTSN 718
++R +GGTG+GL IS+ L M G + S + GSTF FT N + +SN
Sbjct: 857 MTRKYGGTGLGLVISQRLSEMMGGRMWVESQIDNGSTFYFTITVPADPLTESINLNKSSN 916
Query: 719 EHNSQQMNNQPNSVS-SEFQGMKA----LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ NS+++ N V+ +F M+A +VV+ +++ + R G Q ++
Sbjct: 917 QLNSKRLLILSNHVAHRQFLTMQAESWEMVVN--AVKSPAEVFSCLRQGEQFDIA----- 969
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
I++M E + +L + + +Q+ L+ ++
Sbjct: 970 ----------ILDMQFSE---------IDSLALAKKIRQHPNYQTLPLLILKDLNQPEIK 1010
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASL-----QRAMGVGNKGNIRNWELPSMSLRHLLLGRK 888
+ ++ + + KPL+ S L SL Q+ + + + P +S L +
Sbjct: 1011 HRVNPIAGIAFLNKPLKQSQLYNSLLNLTRQQPIRFSSSDSNVGQTYPDLS----DLAMR 1066
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
IL+ +D+ VNLK+ L + G G + L +D MD+QMP+MDG E
Sbjct: 1067 ILVAEDHPVNLKMIILILSKLGLRADVAGNGLEVLSALQ-RQSYDVILMDVQMPQMDGLE 1125
>gi|344339667|ref|ZP_08770595.1| multi-sensor hybrid histidine kinase [Thiocapsa marina 5811]
gi|343800403|gb|EGV18349.1| multi-sensor hybrid histidine kinase [Thiocapsa marina 5811]
Length = 1717
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 165/554 (29%), Positives = 267/554 (48%), Gaps = 79/554 (14%)
Query: 405 IFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 464
+F + + K E + +++AEAA +KS+FLA +SHEIRTPMN V+G+ +L+
Sbjct: 1157 VFAQMLVNVQKRRETEDSLRLSREQAEAASRSKSEFLANMSHEIRTPMNAVIGLSQILLG 1216
Query: 465 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 524
T+L+ Q+DY+ S + L+ +IN++LD +K+E+GKL+LE+ F + +LD + +LF
Sbjct: 1217 TDLNDEQRDYLGKIHGSSRLLLGIINDILDYSKIEAGKLDLESRPFRMDELLDQMATLFG 1276
Query: 525 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 584
+ +KG+EL +S VP TL+GD R Q++TNL+ N++KFTE+G + + + +
Sbjct: 1277 SAAGEKGLELVFRVSPDVPRTLLGDALRLGQVLTNLLANALKFTEQGTVEIRIARL---- 1332
Query: 585 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644
G T+ K L V DT
Sbjct: 1333 ------------------------------------GGDTAQVK--------LRFEVADT 1348
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G G+ E R+F F Q S +R +GGTG+GL IS+ LV RM G + S P GS F
Sbjct: 1349 GIGMDTEQIDRLFQAFSQADSSTTRKYGGTGLGLVISRKLVERMGGRLTVASAPEAGSVF 1408
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 764
+F + S E +++P + + G + LVVD + V R +Q +
Sbjct: 1409 SFDLLL----PVSRE------DSEPRDL-RKIAGARVLVVDDHAVSRTVLREILQSWRCR 1457
Query: 765 VEVVSDQLQCLSQIASGSKI---INMILVEQEV-WEKDTSVSTLFVNNLRKLG--CGFQS 818
V+ + + + + + IL++ ++ + D +T + LRK G G ++
Sbjct: 1458 VDEAASGAAAVQAVIEAERAGRPFDFILMDWKMPGDLDGLEATRQLFRLRKEGRLTGAET 1517
Query: 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG----VGNKGNIRNWE 874
+++ +R + + + + KP+ +S L +L A G G
Sbjct: 1518 PAIIVSG---YNRDDLPKERSGLSGFLGKPVTASALLDTLLEAHGEKPHPGRTAPTARAP 1574
Query: 875 LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 934
+PS + G IL+V+DN +N +VA L+R GA V E G +A L FD
Sbjct: 1575 IPSFT------GAAILLVEDNALNQEVAKRMLQRTGAVVTLAENGIEAVALAT-TQDFDL 1627
Query: 935 CFMDIQMPEMDGYE 948
MD+QMP MDG+E
Sbjct: 1628 VLMDLQMPMMDGFE 1641
>gi|83311392|ref|YP_421656.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
gi|82946233|dbj|BAE51097.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 1196
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 166/542 (30%), Positives = 250/542 (46%), Gaps = 98/542 (18%)
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489
AE A AKS FLAT+SHEIRTPMNGVL M +L D L Q++ R + S +L+++I
Sbjct: 529 AEEASQAKSLFLATMSHEIRTPMNGVLTMAQLLEDMPLPAEQREMARVIRDSATSLLTII 588
Query: 490 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 549
N++LD +K+E+ KL+LE V +L +++ V L + ++Q+KG+ L ++ + + ++GD
Sbjct: 589 NDILDFSKIEADKLQLELVDLSLSEVVEGVADLLTIRAQEKGISLITFVDPALTDMVVGD 648
Query: 550 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 609
P R RQIITNL GN+IKFT+KG++ + V +
Sbjct: 649 PIRLRQIITNLAGNAIKFTDKGYVRIAVRAL----------------------------- 679
Query: 610 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669
D P + L S+ DTG G+ E Q+R+F PFMQ +ISR
Sbjct: 680 -----------DPRERPLR--------LEFSITDTGIGLDSEQQARLFEPFMQADITISR 720
Query: 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 729
+GGTG+GLSI + LV M GEIG S GSTF F Q+ +P
Sbjct: 721 RYGGTGLGLSICRRLVAMMGGEIGVRSNVGQGSTFWF-----------------QVPLEP 763
Query: 730 NSVSSE----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII 785
V +E G+ LV+ P+ A+ R ++ LG QV VV+ ++ +
Sbjct: 764 AEVEAEPPLDLSGIAVLVLAEGPVAAECLRQYLGHLGAQVAVVA---------SAEGAVA 814
Query: 786 NMILVEQEVWEKDTSVSTLFVNNLRKLGCG----------FQSKLFLLANSISSSRANTS 835
+ W D ++ + +LG + K+ +L + + +
Sbjct: 815 AVRAAALAGWTYDVALLDGGQDFRLRLGVAGALMTAAGPDLELKVAMLVAQDAFAAVASE 874
Query: 836 TDGVSIPSVIMKPLRSSML----AASLQRAM----GVGNKGNIRNWELPSMSLRHLLLGR 887
+ +V+ KP+R L A ++ RA G W P+M G
Sbjct: 875 VKAAGLYAVLPKPIRRRQLWRNVAVAVGRATPEAEAADGTGAEEGWRPPTME-EAAAAGA 933
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
IL+ +DN N V ++R G A+ V G +A E M + D MPEMDGY
Sbjct: 934 LILVAEDNPTNKVVIRHLMERLGYAIEVVGNGTEAWE-RMQIRDYGLLLTDCHMPEMDGY 992
Query: 948 EM 949
E+
Sbjct: 993 EL 994
>gi|406889193|gb|EKD35451.1| hypothetical protein ACD_75C01906G0001, partial [uncultured
bacterium]
Length = 770
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 151/526 (28%), Positives = 255/526 (48%), Gaps = 68/526 (12%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AEAA+ AKS FLA +SHEIRTPMN ++GM + + T+L Q+DY++ A S +L+
Sbjct: 278 KEAAEAANTAKSDFLARMSHEIRTPMNAIIGMTHLALQTDLTAKQRDYIKKAHGSAISLL 337
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN++LD +K+E+GK+ELE + F+L +L+ + ++F+ K+ +K +EL +++ VP L
Sbjct: 338 DIINDILDFSKIEAGKMELENIDFSLDEVLEQLSNVFAMKAAEKNIELLIHVDPDVPTFL 397
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R RQI+ NL GN++KFT+ G + +++ +E I ++ ++ + +S +A
Sbjct: 398 RGDPLRLRQILINLTGNALKFTQAGEVVISINQLESDGQKIRLQFAVADTGIGMSETQLA 457
Query: 607 DRCHSWKGFKTFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665
K F +F+Q DGST
Sbjct: 458 ------KLFNSFSQADGST----------------------------------------- 470
Query: 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 725
+R +GGTG+GL I K LV M+GEI S + GSTF F+A+F S + E
Sbjct: 471 --TRKYGGTGLGLVICKRLVNMMQGEICVESQLDSGSTFHFSALFSTSSRSLKEE----- 523
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS--DQLQCLSQIASGSK 783
+ QG++ L+VD + ++ RY ++ + + + ++ A
Sbjct: 524 ----FPIPDWMQGLRTLIVDDSVVSRRILRYALESFSMSIATANSGEEAIAAVADAPADN 579
Query: 784 IINMILVEQEVWEKD-TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
+IL++ E+ D S + + C ++ + + I
Sbjct: 580 PYRLILMDMEMVGMDGIEASRQILADAPADRC----PKIIMVTAYGQEKVAKEAVYAGIQ 635
Query: 843 SVIMKPLRSSMLAASLQRAMG-VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
++KP+ + L ++ G V + + ++ L + G K+L+++DN +N +V
Sbjct: 636 GFLVKPVSKAALFDAIMECFGFVSPRQACTPHDQSALELTRPIWGSKVLLIEDNAINQQV 695
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
A L++ V + G K L FD MDIQMPEMDGY
Sbjct: 696 ATEYLEQACIQVTVADNGAKGVA-LAESGDFDLVLMDIQMPEMDGY 740
>gi|89075083|ref|ZP_01161524.1| putative sensor histidine kinase/response regulator [Photobacterium
sp. SKA34]
gi|89049170|gb|EAR54735.1| putative sensor histidine kinase/response regulator [Photobacterium
sp. SKA34]
Length = 929
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 169/531 (31%), Positives = 261/531 (49%), Gaps = 95/531 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L+ +Q+DY+ T + S L+
Sbjct: 280 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTKLNTSQKDYLLTIENSANNLL 339
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+GKL LE + F+ LD+V+ L + + +KG+EL + I DR+P L
Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRLLAPSAHEKGLELTLKIDDRIPAGL 399
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q++TNL+GN++KFTE G+I V+V L +V ++I ++
Sbjct: 400 IGDPLRIQQVVTNLIGNAVKFTEHGNIDVSVELKSDVDNNIALQ---------------- 443
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
V DTG GI Q+++F F Q S
Sbjct: 444 --------------------------------FMVRDTGIGISERQQAQLFQAFSQADAS 471
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR +GGTG+GL I++ LV +M GE+ S + GSTF FT + ++ SQ +N
Sbjct: 472 ISRRYGGTGLGLVITQKLVSQMGGEVSLTSRLHQGSTFWFTIQM----NKTDLPVSQPIN 527
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ----------LQCLS 776
++ QG L+V+ A V + + GI V + L CLS
Sbjct: 528 ------TTALQGKSLLLVEANMQAASVIQQRLMLAGIHVTYRASMPDDIDHHDFALLCLS 581
Query: 777 QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTST 836
+ +IL +V++ + + + V C ++L L S T T
Sbjct: 582 --PGEQPPLPVIL--NDVFKAEQTADKVLV-------CLPTTELAL-------SEKLTQT 623
Query: 837 DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM-SLRHLLLGRKILIVDDN 895
+ + + KPL L A+ + + E+P + ++ L ++ VDDN
Sbjct: 624 ---GVYACLGKPLAQR----KLLEALCDNDDEPLSELEVPLLPTVVEKLQPLTVMAVDDN 676
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ +A L V+ GKKA E FD FMDIQMPEMDG
Sbjct: 677 PANLKLISALLGERVETVITATGGKKAVE-YAKNKAFDLIFMDIQMPEMDG 726
>gi|338972480|ref|ZP_08627853.1| two-component hybrid sensor and regulator [Bradyrhizobiaceae
bacterium SG-6C]
gi|338234265|gb|EGP09382.1| two-component hybrid sensor and regulator [Bradyrhizobiaceae
bacterium SG-6C]
Length = 757
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 157/540 (29%), Positives = 253/540 (46%), Gaps = 89/540 (16%)
Query: 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 480
+ E + A AA+ AKS+FLA SHEIRTP+NG++GM ++L+DT L Q+ Y + +
Sbjct: 216 RALAEARDLANAANRAKSKFLAMASHEIRTPLNGIIGMSNLLLDTSLTAEQKTYAKAVKT 275
Query: 481 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 540
SG AL++LI+E+LD +++E+GK++LE F L A+++D+ L + ++Q + +E+A Y+ +
Sbjct: 276 SGDALMALIDELLDFSRIEAGKIDLEQRPFALAAMIEDITELLAPRAQARNLEIASYVDE 335
Query: 541 RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 600
R+P ++GD R RQ++ NL GN+IKFT+ G + +VE +
Sbjct: 336 RLPRQVLGDAARLRQVLLNLAGNAIKFTQSGGV---ALIVEPGI---------------- 376
Query: 601 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660
W G +F V DTG GI EAQ RIF F
Sbjct: 377 -----------WPGEISF---------------------IVRDTGIGIAPEAQQRIFREF 404
Query: 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 720
Q +R +GGTG+GLSIS +V RM G I S G+TF F+ +
Sbjct: 405 EQASEGTARNYGGTGLGLSISDRIVRRMGGHIALESTEGHGATFAFSIPLAAADT----- 459
Query: 721 NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 780
N+ P ++ + G +++ P+ I A + ++R G Q +D ++
Sbjct: 460 -----NDAPAFIAPDLTGKSIMLMAPQSIEASLIARRLERWGAQTCTAAD--ISIAHALL 512
Query: 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
+ + +LV + DT +R + +F A R T S
Sbjct: 513 PERPWHAVLV--DCGSADTPWRDFGNAAVRH--SAHRIAMFTPAQ----RRDITPAMAAS 564
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW---ELPSMSLRHLLL-------GRKIL 890
++KPLR AASL + V + ++ + P+ + H + IL
Sbjct: 565 YTGYLVKPLR----AASLAERLSVSSAAMLQELSGEDAPATDMAHSTMPPETASRALSIL 620
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ----FDACFMDIQMPEMDG 946
+ +DN +N + + L + G A V G++A E + +D MDIQMP++DG
Sbjct: 621 VAEDNEINALLIRSLLIKLGHAPVITTDGEQALESWIAADSAGTPYDVVLMDIQMPKLDG 680
>gi|83311055|ref|YP_421319.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
gi|82945896|dbj|BAE50760.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 514
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 149/464 (32%), Positives = 237/464 (51%), Gaps = 66/464 (14%)
Query: 401 LVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 460
L G F T I + ++ K KAE K+ FLAT+SHEIRTPMNGVLGML
Sbjct: 113 LPGGGFVTTYTDITDRKRAERMLIHAKDKAEETARLKANFLATMSHEIRTPMNGVLGMLH 172
Query: 461 MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 520
+L + L Q+D++ TAQ+S +AL+++IN++LD +K+E+G+++LEA F+L +L++++
Sbjct: 173 LLTGSPLTPDQRDHLETAQSSARALLAIINDILDFSKLEAGQMKLEATKFDLHRLLEEMV 232
Query: 521 SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580
+L G ++DKG+ L++ I+D VP GDP R RQ++TNLMGN++KFTEKG +
Sbjct: 233 ALLKGAARDKGLTLSLRIADTVPRYQAGDPTRLRQVLTNLMGNAVKFTEKGDV------- 285
Query: 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 640
++ VE E S S L
Sbjct: 286 -----AVSVEPEESDSS--------------------------------------RLRFE 302
Query: 641 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700
V DTG GI A +F+ F+Q SI+R GGTG+GLSI K LV M GEIGF SIP
Sbjct: 303 VADTGIGIEPAAAPALFSEFVQADSSITRRFGGTGLGLSICKRLVEMMGGEIGFDSIPGE 362
Query: 701 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 760
G+TF FT S+ + +S + + M L+ + P+ K++ + R
Sbjct: 363 GTTFHFTLPL---SAALPDQDSGAAED----AGPDLPPMAVLLAEDNPVNQKLTTTLLDR 415
Query: 761 LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 820
G +V + + + ++ +A +++L++ + D +T + + G +K+
Sbjct: 416 WGQRVTLARNGAEAIAAVARDH--FDLVLMDVHMPGIDGLEATRRIRAM----SGPVAKI 469
Query: 821 FLLANS--ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862
++A + + A D + + KP+ + L A+L RA+
Sbjct: 470 PIIAMTADVMDGDAALCLD-AGMDDYVAKPVEPTRLLAALHRAI 512
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 874 ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 933
+LP M+ +L+ +DN VN K+ L R+G V G +A + H FD
Sbjct: 390 DLPPMA---------VLLAEDNPVNQKLTTTLLDRWGQRVTLARNGAEAIAAVARDH-FD 439
Query: 934 ACFMDIQMPEMDGYE 948
MD+ MP +DG E
Sbjct: 440 LVLMDVHMPGIDGLE 454
>gi|358637994|dbj|BAL25291.1| hypothetical protein AZKH_2992 [Azoarcus sp. KH32C]
Length = 744
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 160/538 (29%), Positives = 268/538 (49%), Gaps = 79/538 (14%)
Query: 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
++ K++AE+A+ A+ FLA +SHEIRTPMN +LGM ++ +D ++ + Y+ T ++S
Sbjct: 189 ALVRAKEQAESANRARGFFLANMSHEIRTPMNAILGMTELALDATVEAEPRSYLTTVKSS 248
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
++L+++IN+VLD +K+E+GK+ELE+V ++R IL+DV+ F+ + KG+E+ + ++
Sbjct: 249 AESLLNIINDVLDLSKIEAGKVELESVPMSVRTILNDVVRAFAVSAHGKGLEIMLDVAPE 308
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P+ L GDP R RQI+ NL+GN+IKFTE+G + V +++ + +S
Sbjct: 309 MPDRLFGDPTRLRQILANLIGNAIKFTERGEVLVKAWVLR---------------RAGMS 353
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
Y L +V DTG GI + +IF F
Sbjct: 354 LY---------------------------------LQFAVCDTGIGIAADHHEQIFDAFT 380
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q S +R GGTG+GL+IS LV + G+I S P G++F FT F + +
Sbjct: 381 QADVSTARRFGGTGLGLAISNQLVKLLDGQIWLESEPGKGTSFYFTVRF------AADQT 434
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
S + P ++ QG + LVVD A + +QRLG VE+ D +Q + S
Sbjct: 435 SSSIPVAPVALPL-LQGRRVLVVDDCVHAADLLGKLLQRLGAHVEIACDPIQA-EVMRSA 492
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
++++V D +S L ++ + LLA S + ++
Sbjct: 493 RDPFDILVV-------DAGMSPPAGFALMDAPGRGEAIIVLLAQHGQQQTLQQSRNS-AV 544
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR-----------KIL 890
+ ++KP+ + L +++ A+GV + +R+ EL + L + L +L
Sbjct: 545 KARLVKPVFDAELLDAVRAALGV--QSVVRD-ELDAFRLDDVRLDDVRFQNDDGEPLNVL 601
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+V+D VN +A L + G V G++A E +FD MD+QMP +DG E
Sbjct: 602 LVEDTPVNQTLAVKLLAKAGHRVTVAANGREALERF-DRQRFDLILMDVQMPVLDGME 658
>gi|292487219|ref|YP_003530091.1| sensor histidine kinase/response regulator [Erwinia amylovora
CFBP1430]
gi|292900406|ref|YP_003539775.1| two-component system, sensor kinase and response regulator [Erwinia
amylovora ATCC 49946]
gi|428784150|ref|ZP_19001642.1| sensor histidine kinase/response regulator [Erwinia amylovora
ACW56400]
gi|291200254|emb|CBJ47382.1| two-component system, sensor kinase and response regulator [Erwinia
amylovora ATCC 49946]
gi|291552638|emb|CBA19683.1| sensor histidine kinase/response regulator [Erwinia amylovora
CFBP1430]
gi|426277289|gb|EKV55015.1| sensor histidine kinase/response regulator [Erwinia amylovora
ACW56400]
Length = 909
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 171/525 (32%), Positives = 251/525 (47%), Gaps = 88/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T L+ TQ+DY+ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTTLNSTQRDYLHTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LE + F LRA LD+V+ L + + +KG+EL + I VP+
Sbjct: 343 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QII NL+GN+IKFTE G+I I VE
Sbjct: 403 IGDPLRMQQIIVNLLGNAIKFTESGNI------------DIRVEK--------------- 435
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
++ S + + L V + DTG GI + QS++F F Q S
Sbjct: 436 ---------------------RALSNNRMELEVQIHDTGIGISEKQQSQLFQAFRQADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M GEI F S + GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWF-------------HINLALN 521
Query: 727 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN+ S +G V+P AK + ++V S L L+Q
Sbjct: 522 --PNAASDPRIMDCVEGQHLAYVEPNEAAAKAVMEMLNATPMRVS-YSSSLDELAQDRYD 578
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
++ + + + E D T + + ++ + A + + GV+
Sbjct: 579 VLLMGLPVAQGHRLEIDEQQLTPILQRANSVIMALPFQMQIYAEDLKAR-------GVT- 630
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ R + V + R P LL +++ VDDN NLK+
Sbjct: 631 -ACLIKPL-------SMTRLLPVLVDHHYRRDMQPQAE--RTLLPLRVMAVDDNPANLKL 680
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ A +V + G+ A H D MDIQMPE+DG
Sbjct: 681 IGALLEEQVADIVLCDSGEAAIGQARLQH-LDIILMDIQMPEIDG 724
>gi|20090861|ref|NP_616936.1| sensory transduction histidine kinase [Methanosarcina acetivorans
C2A]
gi|19915933|gb|AAM05416.1| sensory transduction histidine kinase [Methanosarcina acetivorans
C2A]
Length = 1000
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 140/373 (37%), Positives = 210/373 (56%), Gaps = 59/373 (15%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+++ K+ AE+A+ AK FLA +SHEIRTPMN VLGML+ML++T L Q++Y++ A AS
Sbjct: 431 LLKAKEAAESANKAKGDFLANMSHEIRTPMNAVLGMLEMLLETSLTDEQREYLQLAHASA 490
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
++L+S+I++VLD +K+E KLELE +SF L +++ +++L SGK+ KG++LA +I +
Sbjct: 491 ESLLSIIDDVLDFSKIEQNKLELEQISFELESLISHIINLLSGKAGSKGLKLAFHIEKDL 550
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P T IGDP R +Q++ N++GN+IKFT+KG I ++ VE + S +N SG
Sbjct: 551 PSTFIGDPVRLKQVLFNILGNAIKFTKKGEI------------ALSVEVYMPSERN--SG 596
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
S S F A L+ V+DTG GIP E S+IF PF+Q
Sbjct: 597 L-------------------SNSDFPEEVA----LLFKVKDTGIGIPPEKLSQIFDPFIQ 633
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
S++R +GGTG+GL+IS LV M+G I S G TF FT G S+ N
Sbjct: 634 ADASVTREYGGTGLGLAISSQLVELMEGRIWVESEVGKGCTFYFTVRVKRGESS---ENY 690
Query: 723 QQMNNQP---------------NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 767
Q NN P N ++S + + L + PI K+ +++ G ++ +
Sbjct: 691 GQGNNIPEESLLVCMEAKESYGNGITS-GESLNVLFAEDHPINQKLILGLLEKKGHKLTL 749
Query: 768 VS---DQLQCLSQ 777
V+ D L LS+
Sbjct: 750 VTSGKDALDALSR 762
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+L +D+ +N K+ L++ G + V GK A + L FDA MDIQMP MDG E
Sbjct: 723 VLFAEDHPINQKLILGLLEKKGHKLTLVTSGKDALDAL-SRRDFDAVLMDIQMPGMDGLE 781
>gi|75907252|ref|YP_321548.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
gi|75700977|gb|ABA20653.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
Length = 1820
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 179/601 (29%), Positives = 276/601 (45%), Gaps = 94/601 (15%)
Query: 375 RCR-FKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAA 433
+C+ F+Q P + + L IA + + + ++ + + K+ AEAA
Sbjct: 1080 QCKYFRQWTPEEIELLEAVAAQLGIALAQAQLLEQETRQREELTIKNFALEQAKRAAEAA 1139
Query: 434 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVL 493
+ AKS+FLA +SHEIRTPMN V+GM +L+DTEL Q+D+V T SG AL+S+IN++L
Sbjct: 1140 NRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELTSQQRDFVETVLTSGDALLSIINDIL 1199
Query: 494 DQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRF 553
D +K+ESGKLELE F +R ++ V+ L + K+ K +ELA I +VP + GD R
Sbjct: 1200 DFSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLIHPQVPMQIAGDLTRL 1259
Query: 554 RQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWK 613
RQI+TNL+ N+IKFT +G + V+V R
Sbjct: 1260 RQILTNLLNNAIKFTPEGEVVVSV------------------------------RSQPSP 1289
Query: 614 GFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673
KT N +I +++DTG GI E +F PF+Q S++R +GG
Sbjct: 1290 NQKTKN--------------CCEIIFTIKDTGIGIAPETMDLLFQPFVQADASMTRKYGG 1335
Query: 674 TGIGLSISK--------YLVGRMKGEIGFVSIPN-------------IGSTFTFTAVFGN 712
TG+GL ISK YL +G +G P GSTF F+
Sbjct: 1336 TGLGLVISKRLGEMMGGYLWVESRGCVGGNPPPGWQRKNSISSASVATGSTFYFSMTVPV 1395
Query: 713 GSSTSNEHNSQQMNNQPNSVSSEFQ--GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 770
+ E S++S Q G + L+VD P ++ R + ++
Sbjct: 1396 VAHADLE----------TSITSPVQLSGKRLLIVDDNPTNRQILRLQAEPWQMETYTAPS 1445
Query: 771 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
+ L+ I G ++ +++ ++ E D +R+ L +L S
Sbjct: 1446 GAEALALIDQGMA-FDIAILDVQMPEMD---GLTLARQIRQRPSYQHLPLVILT---SWG 1498
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLR-HLLLGR-- 887
+ +T + + + KP++ S L L A +GN+ IR +P S + + L +
Sbjct: 1499 QPDTDLSDIEFAACLNKPIKQSQLFDVL--AASLGNQP-IRASVVPDRSAQVNSCLAQQI 1555
Query: 888 --KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
+IL+ +D VN KVA LK+ G V G + E L +D MD+ MPEMD
Sbjct: 1556 PLRILLAEDIVVNQKVALLILKKLGYRADVVANGLEVLEALQ-RQSYDVVLMDVNMPEMD 1614
Query: 946 G 946
G
Sbjct: 1615 G 1615
Score = 47.4 bits (111), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
L G+++LIVDDN N ++ + + G +A L+ FD +D+QMPE
Sbjct: 1411 LSGKRLLIVDDNPTNRQILRLQAEPWQMETYTAPSGAEALALIDQGMAFDIAILDVQMPE 1470
Query: 944 MDGYEML------PCFESFLLIAILVW 964
MDG + P ++ L+ + W
Sbjct: 1471 MDGLTLARQIRQRPSYQHLPLVILTSW 1497
>gi|312171320|emb|CBX79579.1| K07678 two-component system, NarL family, sensor histidine kinase
BarA [Erwinia amylovora ATCC BAA-2158]
Length = 924
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 171/525 (32%), Positives = 251/525 (47%), Gaps = 88/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T L+ TQ+DY+ T + S L+
Sbjct: 298 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTTLNSTQRDYLHTIERSANNLL 357
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LE + F LRA LD+V+ L + + +KG+EL + I VP+
Sbjct: 358 SIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNA 417
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QII NL+GN+IKFTE G+I I VE
Sbjct: 418 IGDPLRMQQIIVNLLGNAIKFTESGNI------------DIRVEK--------------- 450
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
++ S + + L V + DTG GI + QS++F F Q S
Sbjct: 451 ---------------------RALSNNRMELEVQIHDTGIGISEKQQSQLFQAFRQADAS 489
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M GEI F S + GSTF F H + +N
Sbjct: 490 ISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWF-------------HINLALN 536
Query: 727 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN+ S +G V+P AK + ++V S L L+Q
Sbjct: 537 --PNAASDPRIMDCVEGQHLAYVEPNAAAAKAVMEMLNATPMRVS-YSSSLDELAQDRYD 593
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
++ + + + E D T + + ++ + A + + GV+
Sbjct: 594 VLLMGLPVAQGHRLEIDEQQLTPILQRANSVIMALPFQMQIYAEDLKAR-------GVT- 645
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ R + V + R P LL +++ VDDN NLK+
Sbjct: 646 -ACLIKPL-------SMTRLLPVLVDHHYRRDMQPQAE--RTLLPLRVMAVDDNPANLKL 695
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ A +V + G+ A H D MDIQMPE+DG
Sbjct: 696 IGALLEEQVADIVLCDSGEAAIGQARLQH-LDIILMDIQMPEIDG 739
>gi|189426004|ref|YP_001953181.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
gi|189422263|gb|ACD96661.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
Length = 1127
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/365 (32%), Positives = 204/365 (55%), Gaps = 45/365 (12%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+ AE A +KS+FLA +SHEIRTPMN +LG++ + + T+L Q++Y+ T S ++L+
Sbjct: 520 RDTAEGASRSKSEFLANMSHEIRTPMNAILGLVHLALQTDLSHKQREYLDTVSNSAQSLL 579
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN++LD +K+E+G+L++E +F+L ++ L+L S K+++KG+ L + +P+ L
Sbjct: 580 GIINDILDVSKIEAGRLQIEKTNFSLEGVVTRTLALLSIKAREKGINLEQQVDTSIPDAL 639
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R Q++ NL+GN++KFT+ G + + +
Sbjct: 640 VGDPLRLEQVLVNLLGNAVKFTDSGTVTLQIR---------------------------- 671
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+G T P + S +D I L +S+ DTG G+ + R+F PF Q S
Sbjct: 672 ------RG---------TEP-RDSDSDEITLEISITDTGAGMDEQTLGRLFKPFSQGDTS 715
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+RTHGGTG+GL+I ++LV M G I S P GS FTF+AVFG G++ ++ +
Sbjct: 716 TTRTHGGTGLGLTICRHLVEMMGGTITVTSSPGQGSCFTFSAVFGIGTTIAHRKTGSGRS 775
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
S QG+ LV + PI +++R ++ +G+QVE ++ + ++ + I+
Sbjct: 776 ALVQRYRS-LQGLHLLVTEDHPINRQIAREILEAVGVQVETANNGREAVAAMQDHGDRID 834
Query: 787 MILVE 791
+IL++
Sbjct: 835 LILMD 839
Score = 43.9 bits (102), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH--QFDACFMDIQM 941
L G +L+ +D+ +N ++A L+ G V G++A M H + D MDIQM
Sbjct: 784 LQGLHLLVTEDHPINRQIAREILEAVGVQVETANNGREAVAA-MQDHGDRIDLILMDIQM 842
Query: 942 PEMDGYE 948
P MDGYE
Sbjct: 843 PIMDGYE 849
>gi|428221149|ref|YP_007105319.1| PAS domain-containing protein [Synechococcus sp. PCC 7502]
gi|427994489|gb|AFY73184.1| PAS domain S-box [Synechococcus sp. PCC 7502]
Length = 1257
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 158/512 (30%), Positives = 255/512 (49%), Gaps = 81/512 (15%)
Query: 438 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497
S+FLA +SHEIRTPMN V+GM +L+DT+L+ Q+++V T + G AL+++IN++LD +K
Sbjct: 628 SEFLAMMSHEIRTPMNAVIGMTGLLLDTQLNNEQRNFVETIRMGGDALLNVINDILDFSK 687
Query: 498 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 557
+E+ ++ELE F+++A ++++L LF+ K +K +ELA I ++P + GD GR RQI+
Sbjct: 688 IEANRMELEIEPFSIQACVEEILDLFAPKITEKKIELAALIDPKLPSVINGDAGRLRQIL 747
Query: 558 TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 617
NL+ N IKFTEKG + + V +E
Sbjct: 748 INLVSNGIKFTEKGEVTIVVTYIE------------------------------------ 771
Query: 618 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 677
+S+ D + + ++DTG GI E R+F PF Q SI+R +GGTG+G
Sbjct: 772 -----------NSAVDCL-VQFKIKDTGIGIKDEQIGRLFQPFAQADSSITRRYGGTGLG 819
Query: 678 LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSV-SSEF 736
L ISK L M G + S +GSTF+FT G ++ P ++ +
Sbjct: 820 LVISKRLCEMMGGTLTVNSQIGVGSTFSFTIPVACG------------HDLPETILEDDL 867
Query: 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS--QIASGSKIINMILVEQEV 794
+G + L+VD + +Q G+ V+ + L +I + + L E+
Sbjct: 868 KGKRILIVDDNATNRHILTIQLQGWGMLVQSAGLGREALDILEIDPNFDLAILDLKMPEI 927
Query: 795 WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML 854
+ +++ L++ G F +L S+ R + + + KP++SS L
Sbjct: 928 NGAELAIA------LQEKGHTFP---IILLTSLDYHRKIEAA-----AATLSKPVKSSQL 973
Query: 855 AASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVV 914
+L R + + + P +S L +IL+V+DN +N KVA A L+R+G
Sbjct: 974 LKTLLRIFSL-HGSEVTEISHPQVS--GLTKPLQILLVEDNAINQKVAVAMLERFGYNPA 1030
Query: 915 CVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
GK+A ++ +FD FMDI MPEMDG
Sbjct: 1031 IAGNGKEAI-VMTEQQRFDLIFMDIHMPEMDG 1061
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 874 ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 933
+LP L L G++ILIVDDN N + L+ +G V G++A ++L FD
Sbjct: 857 DLPETILEDDLKGKRILIVDDNATNRHILTIQLQGWGMLVQSAGLGREALDILEIDPNFD 916
Query: 934 ACFMDIQMPEMDGYEM 949
+D++MPE++G E+
Sbjct: 917 LAILDLKMPEINGAEL 932
>gi|188584124|ref|YP_001927569.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
BJ001]
gi|179347622|gb|ACB83034.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
BJ001]
Length = 686
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 169/541 (31%), Positives = 257/541 (47%), Gaps = 84/541 (15%)
Query: 418 EDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRT 477
E + E K +AEAA+VAKS+FLATVSHE+RTP+NG+LGM D+L+DT L+ Q+ YV
Sbjct: 159 EAARSLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTPLNPEQRTYVEA 218
Query: 478 AQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVY 537
+ SGKAL+ L++ +LD +++E+G+L+L A F++ A+++ V+ L + ++QDKG+E+A+
Sbjct: 219 FRTSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALD 278
Query: 538 ISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSK 597
I+D + +GD R RQI+ NL GN+IKFT+ G + V++ E
Sbjct: 279 IADDLTALRVGDADRVRQILVNLAGNAIKFTQAGGVGVSLARAGE--------------- 323
Query: 598 NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 657
+GF ++++EDTG GIP E +F
Sbjct: 324 ------------GQREGF----------------------VLTIEDTGPGIPEERIPILF 349
Query: 658 TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTS 717
F Q S S H GTG+GL+I++ LV RM G I S +G F V ++
Sbjct: 350 EEFEQGEDSAS--HEGTGLGLAITRRLVERMNGTIEARS--TVGRGSIFRVVLPLPAAEG 405
Query: 718 NEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ---LQC 774
Q P K L+V P +A + R G VV L
Sbjct: 406 APVPVPQPTLAPR---------KILIVAASPYQAPFLARRLSRSGAAAVVVDSAEAGLDA 456
Query: 775 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 834
LS +A + I + L D +V L R G + L LL+
Sbjct: 457 LSGVAFDALIADRSL-------GDAAVRRLAAEAAR---SGVRCSLILLSPFDRREFGAP 506
Query: 835 STDGVSIPSVIMKPLRS-----SMLAASLQRAMGVGNKGNIRNWELPSMSLR-HLLLGRK 888
S G S ++KP+R+ +L A G+G + + E P+ L GR+
Sbjct: 507 SAKGFD--SYLIKPVRARSLFDRLLEPRPAPARGIG-EAPAQTTEAPTPPLPVKAAPGRR 563
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+L+ +DN +N +A L+R GA V+ G + + FD +DI+MP +DG E
Sbjct: 564 VLLAEDNPINALLATKALERLGAQVILARDGLETLAAVDGQGPFDLALIDIRMPGLDGLE 623
Query: 949 M 949
+
Sbjct: 624 V 624
>gi|91974887|ref|YP_567546.1| ATPase-like ATP-binding protein [Rhodopseudomonas palustris BisB5]
gi|91681343|gb|ABE37645.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
BisB5]
Length = 650
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 164/542 (30%), Positives = 260/542 (47%), Gaps = 98/542 (18%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
++ L+ A+A AKS+ LA SHEIRTP+NG++GM +L+DT L Q YVR + SG
Sbjct: 120 LLTLRDDADATTRAKSRLLAMASHEIRTPLNGIIGMSGLLLDTTLTPEQATYVRAVKTSG 179
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
AL+SLI+E+LD +K+++GK+EL+ F L A+++D+ L + ++Q + +E+A Y+ +R+
Sbjct: 180 DALLSLIDELLDYSKIDAGKIELDHRPFALAALIEDIAELLAPRAQARAIEIAAYVDERL 239
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P +IGD R RQ++ NL GN+IKFT G V L+ E
Sbjct: 240 PAQVIGDAARLRQVLLNLAGNAIKFTSSGG----VALIAE-------------------- 275
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
+DG I+L+ + DTG GI EAQ+R+F F Q
Sbjct: 276 --------------PGERDGE-----------IDLL--IRDTGIGIAPEAQARVFREFEQ 308
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
I+R +GGTG+GLSIS+ +V M G I S P IG+TFT + +
Sbjct: 309 ADDGIARNYGGTGLGLSISERIVSGMGGRIVLHSRPGIGTTFTVSIPLAAADDPAAAMAF 368
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
+ + + G L+ P+ I A++ + +QR + VVSD
Sbjct: 369 K---------APDLAGQTILIAAPQTIEAQLVAHRLQRWNAETRVVSD------------ 407
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA---NTSTDGV 839
L V D + S + ++ G + L L A ++ R N S
Sbjct: 408 ------LAAARVLLPDHAWSAILIDA--GFGVTEAAALALDAKLHATQRIVMLNPSIRAE 459
Query: 840 SIPSV-------IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL--RHLLLGRK-- 888
+P + ++KPLR++ LAA L A+ I + + P ++ + +GR+
Sbjct: 460 LLPKLPAAFTGYLVKPLRAASLAARLGGALIDTAAPGIADSDTPGLAAPDQTAQVGRRLS 519
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ----FDACFMDIQMPEM 944
IL+ +DN++N + + L + G V + G++A + FD MD+QMP +
Sbjct: 520 ILVAEDNDINALLIRSLLTKLGHDAVIADDGEQALQSWRAASADGAPFDLVLMDVQMPLL 579
Query: 945 DG 946
DG
Sbjct: 580 DG 581
>gi|24372448|ref|NP_716490.1| two component signal transduction system hybrid histidine
kinase/response regulator with PAS sensory domain
[Shewanella oneidensis MR-1]
gi|24346431|gb|AAN53935.1| two component signal transduction system hybrid histidine
kinase/response regulator with PAS sensory domain
[Shewanella oneidensis MR-1]
Length = 1765
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 162/529 (30%), Positives = 255/529 (48%), Gaps = 81/529 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K +A+AA AK FLA +SHEIRTPMN ++GM + + T+LD Q++Y+ + + ++L+
Sbjct: 1030 KDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQLDKKQKNYLEKIERASQSLL 1089
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+GKL++E VSF L +L+D+ +FS ++ K +EL ++ VP L
Sbjct: 1090 SIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQIELLFAVAPNVPRHL 1149
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R Q++ NLM N+IKFTE+G + +++ LVE+ D + + + S L+
Sbjct: 1150 LGDPLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQNDDVVLRFSVRDSGIGLT----- 1204
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
Q+ + FKS F Q S
Sbjct: 1205 -------------QEQQSKLFKS------------------------------FTQADTS 1221
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+ISK LV M G IG S GSTF FT S
Sbjct: 1222 TTRKYGGTGLGLAISKQLVELMGGSIGVESQLGHGSTFFFTVKLCISSG----------- 1270
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV--SDQ--LQCLSQIASGS 782
Q V E GM LV D + R ++ +G V+ V D+ ++C SQ
Sbjct: 1271 -QKLFVGQELDGMSILVADDNATARDIMRTTLESMGFNVDTVRSGDEAIMRC-SQQEYAV 1328
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
+I+ + + E + N R L+ ++ ++ T + + +
Sbjct: 1329 ALIDWKMPNLDGIETAKQIKQQTKNAPR----------ILMVSAHANQDFLTQIEQLGLA 1378
Query: 843 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE---LPSMSLRHLLLGRKILIVDDNNVNL 899
I KP+ +S L + A+G +R + P + L L G++IL+V+DN +NL
Sbjct: 1379 GYISKPISASRLLDGIMNALGRSGILPVRRHQDNIAPELLLP--LKGKRILLVEDNEMNL 1436
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+VA L++ G + G+ A + L FD MD QMP MDGY+
Sbjct: 1437 EVATEFLEQVGIILSIATNGQIALDKL-AQQSFDLVLMDCQMPVMDGYQ 1484
>gi|118579340|ref|YP_900590.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
2379]
gi|118502050|gb|ABK98532.1| Hpt sensor hybrid histidine kinase [Pelobacter propionicus DSM
2379]
Length = 977
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 162/527 (30%), Positives = 249/527 (47%), Gaps = 86/527 (16%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KS+FLA +SHEIRTPMNGVLGM ++L+ T L+ Q+ + T + SG+AL+++IN++LD +
Sbjct: 294 KSEFLANMSHEIRTPMNGVLGMTELLLGTLLNGKQRQFAETIRNSGEALLAIINDILDFS 353
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+GK+ELE + F++ +L D LF+ + KG+EL V I VP ++GDP R RQ+
Sbjct: 354 KIEAGKIELEKIPFDMHELLCDAAELFASSAHQKGLELLVSIHPDVPRMVVGDPARLRQV 413
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+ NL N++KFT++G I ++ + E D+I
Sbjct: 414 VLNLASNAVKFTDQGEIVISADVAESGQDNI----------------------------- 444
Query: 617 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
LI + V DTG GI E+ +IF F Q S++R +GGTG+
Sbjct: 445 -----------------LIRFL--VRDTGIGISPESLEKIFEGFAQADGSMTRRYGGTGL 485
Query: 677 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 736
GL+I + L G M G S P++GS F+FTA F + + Q P+S
Sbjct: 486 GLTIVRQLAGLMGGTTRVESTPDVGSCFSFTARF-------DLPATLQQAALPSSAHEAL 538
Query: 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK-------IINMIL 789
+ K LVVD + I G++++ S L+ L+ + + + I++M++
Sbjct: 539 REQKVLVVDDNATNRTILEQIILSWGMRIKTASCALEALASLRNAGQSDPFQLAILDMMM 598
Query: 790 VEQEVWE------KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
+ E D S+ L + L G + + S+A I
Sbjct: 599 PAMDGIELAHAIRTDPSIPPLHMVMLTSSG---------IIGEMERSQA------AGIEY 643
Query: 844 VIMKPLRSSMLAASLQRAMG--VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ KP+RSS L L G +G + E + + L+V+DN VN V
Sbjct: 644 CLTKPVRSSWLYDCLIGLTGTALGRTSQRKEQEQVVATGFTTVSDSSALLVEDNLVNQDV 703
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L+ G V G +A +LL +F MD QMP MDGY+
Sbjct: 704 GREMLRFLGYEVTVASNGSEALDLLA-SRRFSIILMDCQMPVMDGYQ 749
>gi|421082399|ref|ZP_15543282.1| Hybrid sensory histidine kinase BarA [Pectobacterium wasabiae CFBP
3304]
gi|401702636|gb|EJS92876.1| Hybrid sensory histidine kinase BarA [Pectobacterium wasabiae CFBP
3304]
Length = 928
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 173/537 (32%), Positives = 259/537 (48%), Gaps = 102/537 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T L+ TQ DY+ T + S L+
Sbjct: 280 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLNTTQTDYLLTIERSANNLL 339
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE + F+L + LDDV+ L + + +KG+EL + I + VPE
Sbjct: 340 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVMMLLAHTAHEKGLELTLSIQNDVPEQY 399
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R +QIITNL+GN+IKFTE+G+I + V + +++E
Sbjct: 400 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLE---------------- 443
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
V + DTG GI QS++F F Q S
Sbjct: 444 --------------------------------VQICDTGIGIAELQQSQLFQAFRQADTS 471
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S N GSTF F H + +N
Sbjct: 472 ISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWF-------------HITLPLN 518
Query: 727 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
P++V E QG V+ PI A+ + + + + V Q+ G
Sbjct: 519 --PHTVPIEPVYTMLQGKHLAYVEYHPIAAQATLDILSQTPLMVSYSP----TFEQLPEG 572
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT-STDGVS 840
+++L+ ++T + + LR + C + L S++ A T GV
Sbjct: 573 E--FDILLLAIPAQYRNTLLD--YTPRLRDI-CRRAPCVILALPSLAQMDAEQLKTFGVH 627
Query: 841 IPSVIMKPLRSSMLAASLQRAM----------GVGNKGNIRNWELPSMSLRHLLLGRKIL 890
+ + KPL +S L LQ + ++G +R+ P+ L ++
Sbjct: 628 --ACLSKPLAASRLLPLLQDSTLFQLSFLPSDTTSHQGAVRH---PAR------LPLSVM 676
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFMDIQMPEMDG 946
VDDN NLK+ L+ ++ E G +A T+ M HQ D MDIQMP MDG
Sbjct: 677 AVDDNPANLKLIGTLLEEQVDTIILCESGTEAITQAKM--HQIDIILMDIQMPGMDG 731
>gi|378763933|ref|YP_005192549.1| putative two-component hybrid sensor and regulator [Sinorhizobium
fredii HH103]
gi|365183561|emb|CCF00410.1| putative two-component hybrid sensor and regulator [Sinorhizobium
fredii HH103]
Length = 989
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 162/545 (29%), Positives = 254/545 (46%), Gaps = 71/545 (13%)
Query: 410 VNRIAKVEEDYHGMMELKKK-------AEAADVAKSQFLATVSHEIRTPMNGVLGMLDML 462
R AK+E+ + + +++ AE A +AKS+FLA +SHEIRTPMNGV+G+ ++L
Sbjct: 312 AKRTAKLEQRTEQLRKSREELERARDVAEQASIAKSEFLANMSHEIRTPMNGVIGIAELL 371
Query: 463 MDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSL 522
TEL Q+ YV S + L+ LIN++LD +K+E+G+LELE + F LR L D L
Sbjct: 372 EGTELSEQQRRYVSIILHSAETLMDLINDILDFSKIEAGRLELETIPFMLRDTLGDTLQT 431
Query: 523 FSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 582
+ ++ DKG+ELA +I VP+ L+GDP R RQII NL+GN+IKFTE G + V V LV E
Sbjct: 432 LAKRAADKGLELACHIPPEVPDHLMGDPTRLRQIIVNLVGNAIKFTENGEVVVDVTLVGE 491
Query: 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVE 642
++ ++ ++T G P A
Sbjct: 492 GDQGARLQFDV---RDTGIGIPAAQ----------------------------------- 513
Query: 643 DTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGS 702
Q RIF F Q S +R +GGTG+GL+I+ L +M G + S P +GS
Sbjct: 514 ----------QERIFEAFAQADTSTTRQYGGTGLGLAIAAQLAEKMGGPMQLDSKPGVGS 563
Query: 703 TFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 762
FTF A F ++ +E +G + LVVD ++ + G
Sbjct: 564 VFTFAADFVLAPEAQKARPVRE---------AELRGRRVLVVDDNATNRQILEEIVVNWG 614
Query: 763 IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 822
+ V D L+ + S + + + + + +S + +L + +
Sbjct: 615 MIPIVAVDGAAALNALEQSSGALPDLALLDVMMPR---MSGFELAACMRLRPALKETRIV 671
Query: 823 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH 882
+ +S + + +++KP++ S L ++ A+G + + LR
Sbjct: 672 MMSSAGRPSDEALLRKLDVSRLLVKPVKQSDLLNAITNALGFSMREDEVEGSASPARLR- 730
Query: 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QFDACFMDIQM 941
LG +L+ +D VN +VA L + G V V G++A E H +D MD+ M
Sbjct: 731 TGLGLTVLLAEDGAVNRQVAVDLLTKRGHRVEAVGNGQEAVE--AAEHGSYDLVLMDVHM 788
Query: 942 PEMDG 946
P MDG
Sbjct: 789 PVMDG 793
>gi|441504433|ref|ZP_20986427.1| BarA sensory histidine kinase [Photobacterium sp. AK15]
gi|441427900|gb|ELR65368.1| BarA sensory histidine kinase [Photobacterium sp. AK15]
Length = 920
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 165/534 (30%), Positives = 259/534 (48%), Gaps = 103/534 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T L +QQDY++T + S L+
Sbjct: 280 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTRLSSSQQDYLQTIEKSANNLL 339
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+GKL LE + F+ LD+V+ L + + +KG+EL + I +R+P L
Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFTESLDEVMKLLAPSAHEKGLELTLKIDERIPAGL 399
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q++TNL+GN++KFTE+G+I V S+E++T+ ++
Sbjct: 400 IGDPLRIQQVLTNLIGNAVKFTERGNIDV----------SVELKTDKDAN---------- 439
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
I+L V DTG GI Q+++F F Q S
Sbjct: 440 ----------------------------IDLQFMVRDTGIGISERQQAQLFQAFSQADAS 471
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR +GGTG+GL I++ LV +M GEI S + GSTF FT
Sbjct: 472 ISRRYGGTGLGLVITQKLVTQMGGEISLTSRLHQGSTFWFTLRLTKTDLPV--------- 522
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSDQLQ----CLSQIA 779
+QP SS K L+++P A V + + R G+ V + D + L +A
Sbjct: 523 SQPIDTSS-LTDKKLLLIEPNMQAASVIQQRLIRAGLHVTYRSTMPDDAEHHHFALLNLA 581
Query: 780 SGSK-----IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 834
G + +++M+ +++ +K + +L +L
Sbjct: 582 PGEQPPIATLLDMVFKAEQLADK-------VMVSLPTTELALSERLV------------- 621
Query: 835 STDGVSIPSVIMKPLRSSMLAASL--QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIV 892
+ + + KPL L SL + M V + + P +++ L ++ V
Sbjct: 622 ---NAGVTACLPKPLAHRKLLESLISEPDMLVEPEPQLPE---PVSTIQPL----TVMAV 671
Query: 893 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
DDN NLK+ +A L V+ G++A E FD FMDIQMPEMDG
Sbjct: 672 DDNPANLKLISALLSERVETVITATGGRRAVE-YASQKAFDLIFMDIQMPEMDG 724
>gi|144898719|emb|CAM75583.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
Length = 1067
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 159/534 (29%), Positives = 255/534 (47%), Gaps = 80/534 (14%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ E ++AEAA+ AKS+FLAT+SHEIRTPMNG++GM +L+DT+L Q + T + S
Sbjct: 395 LKEAVERAEAANRAKSEFLATMSHEIRTPMNGIIGMTGLLLDTQLTREQMHFANTVRTSA 454
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
+AL+S+IN++LD +K+E+G+LE E F +R +++ V+ + + + + + VEL +
Sbjct: 455 EALLSIINDILDFSKMEAGRLEFEYGPFEIRPLIEGVVDILAPRVKGRNVELTYVVPPSA 514
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
GD GR RQ++ NL GN+IKFTE G + + + E D + + E+ +G
Sbjct: 515 RGVFYGDAGRLRQVLLNLAGNAIKFTEIGSVHIGIRAETEFDDMVRLRIEVVD-----TG 569
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
++D A+SR+FT F Q
Sbjct: 570 IGISD-------------------------------------------NAKSRLFTMFTQ 586
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
S +R GGTG+GL+IS+ +V M GEIGF S GSTF F S+E S
Sbjct: 587 ADSSTARRFGGTGLGLAISRRIVDMMGGEIGFDSTEGQGSTFWFQVSL----RRSDEQTS 642
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV---SDQLQCLSQIA 779
V + +G + LVVD +V ++ ++ G QV++V + L + Q
Sbjct: 643 DI------EVINPLEGARILVVDDNATNREVFQHQLENWGAQVDLVDGAAGGLMAIRQAQ 696
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
+ ++L++ + +S L + + + +LA+S + S +
Sbjct: 697 HSAHPYQLVLLDHHM----PGMSGLDLAAVVRADPTTADLKLVLASSANPSDFRQLNASL 752
Query: 840 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL-------LGRKILIV 892
+ V+ KP+R S L L +G R+ LP + L L +IL+V
Sbjct: 753 RLDDVLSKPVRQSALLDCLMSRLG-------RSQALPQQTTLSALSDLPAPALALRILVV 805
Query: 893 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+DN +N +VA L + G + G +A L+ +D MD+QMP MDG
Sbjct: 806 EDNPINQQVAVGLLAKLGHRADVADDGAEAVALV-ERGDYDLILMDMQMPRMDG 858
>gi|301069192|dbj|BAJ11975.1| histidine kinase ExpS [Pectobacterium carotovorum subsp.
carotovorum]
Length = 933
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 173/532 (32%), Positives = 259/532 (48%), Gaps = 92/532 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T L+ TQ DY+ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLNTTQTDYLLTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE + F+L LDDV+ L + + +KG+EL + I + VPE
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R +QIITNL+GN+IKFTE+G+I + V + + +++E
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHHVQLE---------------- 446
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
V + DTG GI QS++F F Q S
Sbjct: 447 --------------------------------VQIRDTGIGIAELQQSQLFQAFRQADTS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S + GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGSTFWF-------------HITLPLN 521
Query: 727 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIA 779
P+++ +E QG V+ PI A+ + L I Q ++ Q+
Sbjct: 522 --PHAIPTEPAYTMLQGKHLAYVEYHPIAAQAT------LDILSQTPLIVSYSPTFEQLP 573
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT-STDG 838
G +++L+ V ++T + + LR + C + L S++ A T G
Sbjct: 574 EGE--FDILLLGIPVQYRNTLLD--YTPRLRDI-CRRSPCVILALPSLAQMDAEQLKTFG 628
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL-LGRKILIVDDNNV 897
V + + KPL +S L LQ + + + RHL L +++ VDDN
Sbjct: 629 VH--ACLSKPLAASRLLPLLQDSTLFQFSFLPDDTASHQSAARHLARLPLRVMAVDDNPA 686
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKA---TELLMPPHQFDACFMDIQMPEMDG 946
NLK+ L+ ++ E G+ A EL +Q D MDIQMP MDG
Sbjct: 687 NLKLIGTLLEEQVETIILCESGQDAIAQAEL----NQCDIILMDIQMPGMDG 734
>gi|359447438|ref|ZP_09237034.1| hypothetical protein P20439_3403 [Pseudoalteromonas sp. BSi20439]
gi|358038719|dbj|GAA73283.1| hypothetical protein P20439_3403 [Pseudoalteromonas sp. BSi20439]
Length = 789
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 163/561 (29%), Positives = 272/561 (48%), Gaps = 87/561 (15%)
Query: 395 ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 454
++ I +L+G + ++ RI E +++ K+ AE A +AKS+FLA++SHEIRTPMNG
Sbjct: 246 LIAIGALIGSL-HSSEQRIETEAE----LVKAKEAAEQAVIAKSEFLASMSHEIRTPMNG 300
Query: 455 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514
VLGML+++ T LD Q+ +++ AQ+S ++L+ +IN++LD +K+E+GKL++E + FNL
Sbjct: 301 VLGMLNLIQTTSLDQQQRHHIKLAQSSAESLLGIINDILDFSKIEAGKLDIENIQFNLPK 360
Query: 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 574
+L +++ F+ K++ +L + + ++ DP R RQI+ NL+ N+IKFT+ G +
Sbjct: 361 LLGEIVESFALKAESNNTQLILDTTHVSTSEIVCDPNRLRQILNNLIANAIKFTQNGQVL 420
Query: 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 634
VT +E+ +D+ +E
Sbjct: 421 VTAT-IEKTIDNTTLE-------------------------------------------- 435
Query: 635 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 694
++ DTG GI L+ Q ++F F Q S +R +GGTG+GL+I K L M GE+
Sbjct: 436 ----CAIIDTGIGISLDKQKQLFDSFTQADASTTRQYGGTGLGLAIVKQLCELMGGEVSV 491
Query: 695 VSIPNIGSTFTF----TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIR 750
S+PN GSTF F T+V +H Q + L+VD +
Sbjct: 492 NSLPNEGSTFAFSVKITSVIDQAFDLDCQH---------------IQAKRILIVDNSEMN 536
Query: 751 AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI-INMILVEQEVWEKDTSVSTLFVNNL 809
A ++ + G V VV D + + I++ ++ ++ +++ E
Sbjct: 537 ATITEKQLMLWGADVSVVCDYEEVETYISNHQQMPPDVAIIDSSFLEPVAHPQA------ 590
Query: 810 RKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGN 869
KL + L+ +SSS+++ G ++I KPL + L +L +
Sbjct: 591 EKLKHFLEKSHILIMAPMSSSKSSLFY-GDKETALIFKPLTAIGLYDTLVKGTLAEQPKE 649
Query: 870 IRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--M 927
+ EL +M+ G +L+V+DN VN VA A LK+ E G+ A L
Sbjct: 650 V---ELSAMNTPKKAKGH-VLLVEDNKVNQVVAGALLKQAELTFDIAEDGEDALTKLNQA 705
Query: 928 PPHQFDACFMDIQMPEMDGYE 948
+ + MD QMP MDGY+
Sbjct: 706 TANTYQLILMDCQMPIMDGYQ 726
>gi|110636005|ref|YP_676213.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1]
gi|110286989|gb|ABG65048.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1]
Length = 744
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 160/536 (29%), Positives = 252/536 (47%), Gaps = 83/536 (15%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
++ +++AE A +AKS+FLATVSHEIRTPMNG++GM +L DT L Q+ YV S
Sbjct: 224 LVNARERAEQASIAKSRFLATVSHEIRTPMNGIIGMATLLSDTRLSSEQRTYVAAISTSA 283
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
AL++LI ++LD +K+E+G+LELE R +++ V+ L + ++ K + L +I+ V
Sbjct: 284 SALLALIEDLLDYSKIEAGRLELEPQRMAARELIESVIELMAVRAFTKKIGLGCHIAPTV 343
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P+T++ DPGR RQI+ NL+GN+IKFT++G + +TV
Sbjct: 344 PDTILADPGRLRQILLNLLGNAIKFTDEGGVLMTV------------------------- 378
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
T DG+ L V+DTG GI ++ SRIF F Q
Sbjct: 379 -------------TTTIHDGAP-----------KLAFRVDDTGPGIEKDSLSRIFQEFEQ 414
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT-FTAVFGNGSSTSNEHN 721
S +R HGG G+GL+I++ L+ M+G + S P G+TFT + + G S +
Sbjct: 415 ADTSSTRKHGGAGLGLAITRRLIDAMEGTVTVDSAPGEGATFTVYIPLVGAEGSAAE--- 471
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
S +G ++ P + + ++ G + V + LS +
Sbjct: 472 ----------TSLALKGFDVAILTPHAVEGEALAMTVRAHGGKARVFEGEKSALSLLRRR 521
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKL---GCGFQSKLFLLANSISSSRANTSTDG 838
+ +++ D S+ + LR+L G L L+A + T+G
Sbjct: 522 KSGFDAVII-------DASLENDNGDLLRRLCRNGLRVHQALTLIAPTDRGRLNKFRTNG 574
Query: 839 VSIPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ + I +P R L L Q A V G + R G K+L+ +DN
Sbjct: 575 YN--AFIARPARDRTLLRLLLNPQTAENVAPIGEATARTKATNDGR----GLKVLLAEDN 628
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLM-PPHQFDACFMDIQMPEMDGYEML 950
+N +A A L + G +V V G+ A ++L P FD MD+ MP MDG + +
Sbjct: 629 EINAMLARATLSKAGHSVAVVSNGRAAVDVLTHPARDFDIVLMDLHMPIMDGLDAI 684
>gi|227329138|ref|ZP_03833162.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 931
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 173/532 (32%), Positives = 259/532 (48%), Gaps = 92/532 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T L+ TQ DY+ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLNTTQTDYLLTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE + F+L LDDV+ L + + +KG+EL + I + VPE
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R +QIITNL+GN+IKFTE+G+I + V + + +++E
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHQVQLE---------------- 446
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
V + DTG GI QS++F F Q S
Sbjct: 447 --------------------------------VQIRDTGIGIAELQQSQLFQAFRQADTS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S + GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGSTFWF-------------HITLPLN 521
Query: 727 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIA 779
P+++ +E QG V+ PI A+ + L I Q ++ Q+
Sbjct: 522 --PHAIPTEPAYTMLQGKHLAYVEYHPIAAQAT------LDILSQTPLIVSYSPTFEQLP 573
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT-STDG 838
G +++L+ V ++T + + LR + C + L S++ A T G
Sbjct: 574 EGE--FDILLLGIPVQYRNTLLD--YTPRLRDI-CRRSPCVILALPSLAQMDAEQLKTFG 628
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL-LGRKILIVDDNNV 897
V + + KPL +S L LQ + + + RHL L +++ VDDN
Sbjct: 629 VH--ACLSKPLAASRLLPLLQDSTLFQFSFLPDDTASHQSAARHLARLPLRVMAVDDNPA 686
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKA---TELLMPPHQFDACFMDIQMPEMDG 946
NLK+ L+ ++ E G+ A EL +Q D MDIQMP MDG
Sbjct: 687 NLKLIGTLLEEQVETIILCESGQDAIAQAEL----NQCDIILMDIQMPGMDG 734
>gi|254230528|ref|ZP_04923899.1| signal transduction histidine-protein kinase BarA [Vibrio sp. Ex25]
gi|262393275|ref|YP_003285129.1| BarA sensory histidine kinase [Vibrio sp. Ex25]
gi|451972093|ref|ZP_21925305.1| signal transduction histidine-protein kinase BarA [Vibrio
alginolyticus E0666]
gi|151936953|gb|EDN55840.1| signal transduction histidine-protein kinase BarA [Vibrio sp. Ex25]
gi|262336869|gb|ACY50664.1| BarA sensory histidine kinase [Vibrio sp. Ex25]
gi|451931931|gb|EMD79613.1| signal transduction histidine-protein kinase BarA [Vibrio
alginolyticus E0666]
Length = 932
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 179/616 (29%), Positives = 292/616 (47%), Gaps = 94/616 (15%)
Query: 346 SMYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH 404
S++ S + D ++ + N D R+ + R + K L + I + ++ H
Sbjct: 190 SVFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYH 249
Query: 405 ------IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGV 455
I QAT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV
Sbjct: 250 VEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGV 309
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
+G ++ T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F+ R
Sbjct: 310 IGFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRES 369
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
L++V++L + + +KG+E+ + + ++P L+GDP R +QI+TNL+GNSIKFTE+G+I V
Sbjct: 370 LEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDV 429
Query: 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 635
+V + + DS+E++
Sbjct: 430 SVEMRSQSGDSVELQ--------------------------------------------- 444
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
V DTG GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI
Sbjct: 445 ---FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLT 501
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSR 755
S + GSTF FT + +E ++ G + L+++P A V++
Sbjct: 502 SRLHQGSTFWFTVRLHSTEMPMSELIEVEL----------LTGKQLLLIEPNMQAASVTQ 551
Query: 756 YHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE-KDTSVSTLFVNNLRKLG- 813
+ + GI V S + + + +L+ + D V T ++ +++
Sbjct: 552 QILSQEGILVTYRSS-------LPKNEEQYDYVLLNLAANQTHDADVITPWIEQAKRMAP 604
Query: 814 ---CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI 870
G S LA+ I + + KPL L SL + V + +
Sbjct: 605 SVILGTPSTELALADQIMTEHH---------VQCLTKPLSRRKLLQSL-ISEHVESPPTL 654
Query: 871 RNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH 930
PS R L +L VDDN NLK+ +A L+ V G++A L
Sbjct: 655 SAPITPSEGER---LPLTVLAVDDNPANLKLISALLRERVETVTACSNGQQAVN-LATEK 710
Query: 931 QFDACFMDIQMPEMDG 946
++D FMDIQMP+MDG
Sbjct: 711 KYDLIFMDIQMPQMDG 726
>gi|407695376|ref|YP_006820164.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
domain-containing protein [Alcanivorax dieselolei B5]
gi|407252714|gb|AFT69821.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Alcanivorax dieselolei B5]
Length = 904
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 171/531 (32%), Positives = 257/531 (48%), Gaps = 87/531 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+K+A A KS+FLA +SHEIRTP+NG++G +L ++L QQDY+ T + S +AL+
Sbjct: 259 RKEALKASQIKSEFLANMSHEIRTPLNGIIGFTRLLERSDLSPRQQDYLNTIRKSAEALL 318
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+G+L LE + NL I++DV ++ + +Q+KG+E A I +P L
Sbjct: 319 SIINDILDFSKIEAGRLSLEHIPLNLHDIIEDVQTMLAPLAQEKGLEQAAIIYSDLPSHL 378
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R RQ++TNL+ N+IKFTE G + V L E
Sbjct: 379 LGDPLRIRQVLTNLVSNAIKFTEHGSVVVRAMLEE------------------------- 413
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
Q G+ + K ++V DTG G+ + Q +F F Q S
Sbjct: 414 -------------QKGAEAVVK----------ITVTDTGNGLSEDVQRGLFNAFTQADQS 450
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
SR GGTG+GL+ISK LV M GEIG S P+ GSTF FT + +
Sbjct: 451 ASRRAGGTGLGLAISKRLVEGMGGEIGIDSTPSQGSTFWFTL-----------RCERDVG 499
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+P S +E + +V+ A++ YH+ S +S+I G +++
Sbjct: 500 TRPESPPAELARLSVTLVEASEY-ARLGLYHM---------FSGWRMRISEI-QGMDVLD 548
Query: 787 MILVEQEVWEKD---------TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 837
L + + E D T +++L Q+ + +LAN+ A+ D
Sbjct: 549 SHLAAENLPETDFYVVGVPAMTRDPVGLAPLIQRLARHSQAPVLVLANN-GDYLADELAD 607
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
V+ KP L +L G+G + R+ EL L L ++L+VDD+
Sbjct: 608 QPHC-RVLGKPATRRRLRDALLELSGLGGDRS-RHQEL----LTPLGYHPRVLVVDDHPG 661
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
NLK+A L+ GA VV G++A E FD FMD+ MP MDG E
Sbjct: 662 NLKLARIFLEELGAEVVPCAGGQEALEAF-SQGTFDLIFMDVHMPGMDGLE 711
>gi|22298825|ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus
elongatus BP-1]
gi|22295006|dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus
elongatus BP-1]
Length = 1353
Score = 219 bits (558), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 270/578 (46%), Gaps = 104/578 (17%)
Query: 386 LLAISTSIGILVI-ASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATV 444
L A++ +GI + A L+ H Q + +E + + + +AE A+ AKS+FLAT+
Sbjct: 776 LEAVAAQVGIAIAQAELLRHEQQQRQLLAQQNQE----LEQARLQAELANRAKSEFLATM 831
Query: 445 SHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504
SHEIRTPMN VLG ++L+DT L+ Q+D+++T +G+AL+++IN++LD +K+ESGKL
Sbjct: 832 SHEIRTPMNAVLGFTNLLLDTPLNEQQRDFLQTLHQAGEALLTIINDILDFSKIESGKLV 891
Query: 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNS 564
LE F++R ++DVLSL + K+Q+K +EL + P + GD R RQI+ NL+GN
Sbjct: 892 LEQQPFDVRECVEDVLSLLASKAQEKELELLYTCTPETPAQIKGDVTRLRQILVNLVGNG 951
Query: 565 IKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624
IKFT +G + V V +++ K F F
Sbjct: 952 IKFTHEGQVAVHVGVLK----------------------------REGKDFLQFQ----- 978
Query: 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 684
V+DTG GIP + R+F PF QV S +R +GGTG+GL ISK L
Sbjct: 979 ----------------VQDTGIGIPRDRLDRLFKPFSQVDASTTREYGGTGLGLVISKRL 1022
Query: 685 VGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVV 744
M G++ S G+TFTFT + G Q P V +G + LV+
Sbjct: 1023 CELMGGDMSVESTEGQGTTFTFT-ILAEG----------QKPYVPPKVHPALEGKRVLVI 1071
Query: 745 DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL 804
D SR ++ L L + G ++L W D +V L
Sbjct: 1072 DDN----AASRENLCTL----------LHNWGMVPIGYSDPRLVLEAAPPW--DLAVIDL 1115
Query: 805 FVNNLRKLGCG--------FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAA 856
+ + L F + +L +S T++ I + + KP+R L
Sbjct: 1116 NMPQMTGLQLAERLQSEPNFNQQPMILLTPLSW--LETASRKELITAHVPKPIRPLTLRQ 1173
Query: 857 SLQRAMGVGNKGNIRNWELPSMSLR--HLLLGR----KILIVDDNNVNLKVAAAGLKRYG 910
+L R + + P+++ L LG +IL+ +DN VN KVA LKR G
Sbjct: 1174 TLIRTLSSESATQ------PALTKTGIDLNLGNRFPLRILLAEDNAVNQKVALHILKRMG 1227
Query: 911 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G + E L +D MD+QMP+MDG E
Sbjct: 1228 YRADVAANGLEVLEALQ-QRPYDVILMDVQMPKMDGLE 1264
>gi|237654499|ref|YP_002890813.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
gi|237625746|gb|ACR02436.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
Length = 921
Score = 219 bits (558), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 166/534 (31%), Positives = 256/534 (47%), Gaps = 79/534 (14%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
++ K+ AEAA AKS FLAT+SHEIRTPMNGVLGM ++L+D+ L+ Q+ + + SG
Sbjct: 259 LLRAKEAAEAASQAKSDFLATMSHEIRTPMNGVLGMTELLLDSGLNHEQRHFAEAVENSG 318
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
+ L+ +IN++LD +K+ESG LELEAV F L +L+D L++F+ ++ K +EL + V
Sbjct: 319 RHLLGIINDILDFSKIESGHLELEAVEFELGDLLEDTLAMFAQPAEKKRLELIADLPPEV 378
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
+ GDP R RQI+ NL N+IKFTE+G + V L+ E D + S ++T G
Sbjct: 379 RRCVRGDPFRLRQIVGNLANNAIKFTERGEVVVRARLLGEGTDGYRLRI---SVEDTGIG 435
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
P H+ + K F Q F Q
Sbjct: 436 IPP----HAQQ--KIFEQ---------------------------------------FSQ 450
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
+ S +R GGTG+GL+I + LVG M GEIG S P G+ F G ST+
Sbjct: 451 LDGSTTRQFGGTGLGLAICRRLVGLMGGEIGVDSRPGAGACFHIDLCLPAGQSTA----- 505
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIA 779
+ + + ALVVD ++ + G+QVE +D L L++ A
Sbjct: 506 -----EALRCDVALERVHALVVDDNATNREILLRQLHGWGMQVECSADGAGALDRLARAA 560
Query: 780 SGSKIINMILVEQEVWEKDT-SVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
+ + + +++ + D ++T N G +L +L +S SS+ +
Sbjct: 561 TAGEGFELAVLDMHMPHMDGLQLATAIRANPALAGV----RLVVLTSSYSSASVR-ERER 615
Query: 839 VSIPSVIMKPLRSS----MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDD 894
I + KP+R + +L ++L+ V + + P+ G ++L+ +D
Sbjct: 616 AGILRCVHKPIRQAELFEVLCSALRAVDAVPAATAVADEWRPTR-------GGRVLLAED 668
Query: 895 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
N VN +V A L + G AV G++A + L FD MD MP +DGYE
Sbjct: 669 NPVNQQVGLAMLAKLGIAVRVANDGEEAVK-LAATEAFDLILMDCHMPVLDGYE 721
>gi|161936294|ref|YP_131202.2| hybrid sensory histidine kinase BarA [Photobacterium profundum SS9]
Length = 927
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 170/536 (31%), Positives = 261/536 (48%), Gaps = 106/536 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T L +Q DY+ T + S L+
Sbjct: 280 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTRLSSSQHDYLLTIEKSANNLL 339
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+GKL LE + F+ LD+V+ L + + +KG+EL + + DR+P L
Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLKVDDRIPAGL 399
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q++TNL+GN++KFTE+G+I V+V EL +SK+
Sbjct: 400 IGDPLRIQQVVTNLIGNAVKFTERGNIDVSV--------------ELKASKD-------- 437
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ I L +V DTG GI Q+++F F Q S
Sbjct: 438 --------------------------ESIELQFTVRDTGIGISERQQAQLFQAFSQADAS 471
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT-AVFGNGSSTSNEHNSQQM 725
ISR +GGTG+GL I++ LV +M GEI S + GSTF F+ ++ S
Sbjct: 472 ISRRYGGTGLGLVITQKLVTQMGGEISLTSRLHQGSTFWFSLSMLKTDLPVS-------- 523
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII 785
QP ++ G K L+++P A + + QRL I +G +
Sbjct: 524 --QPIDTTA-LVGQKVLLIEPNMQAASIVQ---QRL----------------IKAGMFVT 561
Query: 786 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 845
+ +EV + L L G Q + +L + + + T +S+P+
Sbjct: 562 YRSTMPEEVEHHQFA--------LICLPPGQQPPIAILLDRVFKAEQVTDKVIISLPTTE 613
Query: 846 MKPLRSSMLAASLQRAMG-----------VGNK-GNIRNWELPSM-SLRHLLLGRKILIV 892
+ L ++ A + +G + NK +I EL S+ + ++ V
Sbjct: 614 LA-LSERLINAGVSACLGKPLSHRKLFEVLNNKPDDIFEPELLSLPETAQKIEPLTVMAV 672
Query: 893 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ--FDACFMDIQMPEMDG 946
DDN NLK+ +A L V+ G+KA E HQ FD FMDIQMPEMDG
Sbjct: 673 DDNPANLKLISALLSERVETVITATGGRKAVEY---AHQKAFDLIFMDIQMPEMDG 725
>gi|158521107|ref|YP_001528977.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
gi|158509933|gb|ABW66900.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
Length = 1721
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 172/306 (56%), Gaps = 18/306 (5%)
Query: 405 IFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 464
+F + I K E + + ++A AA AKS+FLA +SHEIRTPMNG+LGM +L++
Sbjct: 1249 VFAQMLVNIRKRHEIEQSLHQATQRARAATQAKSEFLANMSHEIRTPMNGILGMTSLLLE 1308
Query: 465 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 524
TEL Q+ + + +G AL+ +IN++LD +K+E+GKLELE V F+L +L+ + S
Sbjct: 1309 TELTGEQRRFAEIVRNNGDALLEIINDILDFSKIEAGKLELEMVDFSLNKLLEGLAGALS 1368
Query: 525 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 584
++ KG+EL I P + GDPGR RQI+ NLMGN+IKFTEKG +FV + E V
Sbjct: 1369 VQAHKKGIELIYDIEPGTPSHVRGDPGRLRQILANLMGNAIKFTEKGEVFVQIKTGEAVA 1428
Query: 585 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644
ETE +G P + D A + L+ SV+DT
Sbjct: 1429 ADTVAETE--------AGAPDVKSTEPEVAVSVSDND----------APAVTLLFSVKDT 1470
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GI E IF F Q SI+R GGTG+GL+IS+ L G + G++ S P GSTF
Sbjct: 1471 GIGISPEKIETIFESFTQADSSITRNFGGTGLGLTISRKLAGMLGGKLWVTSNPGAGSTF 1530
Query: 705 TFTAVF 710
FTA F
Sbjct: 1531 AFTARF 1536
>gi|452964323|gb|EME69366.1| Signal transduction histidine kinase [Magnetospirillum sp. SO-1]
Length = 516
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 132/379 (34%), Positives = 200/379 (52%), Gaps = 55/379 (14%)
Query: 401 LVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 460
L G F T I + ++ K KAE K+ FLAT+SHEIRTPMNGVLGML
Sbjct: 113 LPGGGFVTTYTEITDRKRAERMLIHAKDKAEEMARVKANFLATMSHEIRTPMNGVLGMLH 172
Query: 461 MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 520
+L + L Q+D++ TAQ+S +AL+++IN++LD +K+E+G+++LEA F+L ++D++L
Sbjct: 173 LLTGSPLTPEQRDHLETAQSSARALLAIINDILDFSKLEAGQMKLEATRFDLHRLVDEML 232
Query: 521 SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580
+L G + DKG+ L + D VP + GDP R RQ++TNLMGN++KFTEKG + V+V
Sbjct: 233 ALMKGAAADKGLTLQARLGDGVPHHIAGDPTRLRQVLTNLMGNAVKFTEKGGVVVSV--- 289
Query: 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 640
P + A L
Sbjct: 290 ------------------------------------------KAEPDGPAPA---RLRFE 304
Query: 641 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700
V DTG GI A +F F+Q SI+R GGTG+GLSI K LV M GEIGF S+P
Sbjct: 305 VADTGIGIEPAAAPALFAEFVQADSSITRRFGGTGLGLSICKRLVEMMGGEIGFDSVPGE 364
Query: 701 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 760
G+TF FT + + + ++ M N+ + S + L+ + P+ K++ ++R
Sbjct: 365 GTTFHFTLPL---VAAAEDRDTGAMVNETGDLPS----LSVLLAEDNPVNQKLTTTLLRR 417
Query: 761 LGIQVEVVSDQLQCLSQIA 779
G +V + + + ++ +A
Sbjct: 418 WGQRVTLAHNGAEAIAAVA 436
Score = 43.9 bits (102), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 874 ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 933
+LPS+S +L+ +DN VN K+ L+R+G V G +A + FD
Sbjct: 392 DLPSLS---------VLLAEDNPVNQKLTTTLLRRWGQRVTLAHNGAEAIAAVA-REPFD 441
Query: 934 ACFMDIQMPEMDGYE 948
MD+ MP MDG E
Sbjct: 442 LVLMDVHMPGMDGLE 456
>gi|261409327|ref|YP_003245568.1| histidine kinase [Paenibacillus sp. Y412MC10]
gi|261285790|gb|ACX67761.1| histidine kinase [Paenibacillus sp. Y412MC10]
Length = 559
Score = 219 bits (557), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 128/368 (34%), Positives = 205/368 (55%), Gaps = 57/368 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++AE A AK++FLA +SHEIRTPMNGV+GM+D+LMD+EL Q++Y + S ALV
Sbjct: 159 KEEAEIAAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSELQDEQREYATIIRNSADALV 218
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+ESGK+ELE F+L++ + +V LFSG++ K +EL YI D++P +
Sbjct: 219 NIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLELTYYIEDQIPSMV 278
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD GR RQ++ NL+ N++KFT +G +++ V L + + +N L+
Sbjct: 279 FGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLAK-------------AEENRLT----- 320
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
L +V+DTG GI + R+F PF Q+ S
Sbjct: 321 ------------------------------LEFTVKDTGIGISSKKLDRLFKPFSQLDSS 350
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
++R +GGTG+GL+I K LV M GEI S G+TF FT ++E ++
Sbjct: 351 MTRRYGGTGLGLAICKSLVQMMGGEIEVDSKEGEGATFVFTICV-----HTHEEEHPRLR 405
Query: 727 NQPNSVSSEFQGMKA---LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 783
+ +S G + L+VD PI K+ ++++G+ ++ D Q + ++A+G K
Sbjct: 406 EEEHSDKYRVHGGRQPNILIVDDHPINRKLMESMLEKMGMIADMAEDGRQAV-EMAAGPK 464
Query: 784 IINMILVE 791
+MI ++
Sbjct: 465 AYDMIFMD 472
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Query: 886 GRK--ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
GR+ ILIVDD+ +N K+ + L++ G E G++A E+ P +D FMD+QMP
Sbjct: 418 GRQPNILIVDDHPINRKLMESMLEKMGMIADMAEDGRQAVEMAAGPKAYDMIFMDLQMPV 477
Query: 944 MDGYE-------MLPCFESFLLIAI 961
MDG E M P ++ +LIA+
Sbjct: 478 MDGLEAARLIRQMKPEADAPVLIAM 502
>gi|359454020|ref|ZP_09243315.1| hypothetical protein P20495_2065 [Pseudoalteromonas sp. BSi20495]
gi|358048971|dbj|GAA79564.1| hypothetical protein P20495_2065 [Pseudoalteromonas sp. BSi20495]
Length = 1120
Score = 219 bits (557), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 164/560 (29%), Positives = 275/560 (49%), Gaps = 79/560 (14%)
Query: 395 ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 454
++ +A+L+G + ++ RI +E ++ K+ AE A AKS+FLA++SHEIRTPMNG
Sbjct: 571 LIAVAALIGSL-HSSQQRIETEQE----LVTAKETAEQAVAAKSEFLASMSHEIRTPMNG 625
Query: 455 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514
VLGML+++ T+LD Q+ ++ AQ+S ++L+++IN++LD +K+E+GKL+++ V FNL
Sbjct: 626 VLGMLNIIKQTKLDQQQEHHIELAQSSAQSLLNIINDILDFSKIEAGKLDIDNVQFNLPK 685
Query: 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 574
+L +V+ F+ K + +L + + +I DP R RQI+ NL+GN++KFT G +
Sbjct: 686 LLGEVVESFALKVEQNNTKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTLNGEVI 745
Query: 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 634
+ + D + F
Sbjct: 746 IVAKI----------------------------------------NDTTNGSF------- 758
Query: 635 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 694
L S+ DTG GI + Q+ +F F Q S +R GGTG+GL+I K L M GE+
Sbjct: 759 --LQCSIIDTGIGIDFKKQATLFNSFTQADASTTRQFGGTGLGLAIVKQLCELMNGEVSV 816
Query: 695 VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 754
S+ GSTF+FT +++ + + S + L++D + A +
Sbjct: 817 TSVKGQGSTFSFTIKI-----------QPRLSKEQDLPSHLIKDKHILIIDECSLNANTA 865
Query: 755 RYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL-G 813
+ G V+ ++D Q L+ + + + IL++ +EK + + + G
Sbjct: 866 SKQLSVWGASVDCINDYQQILNYSHNEVQNTDAILIDYYFFEKASPECITALKGFINIQG 925
Query: 814 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV---GNKGNI 870
C KL ++A +S S+ + + I +I KPL S L SL + + +
Sbjct: 926 C----KLVIMA-PMSYSKEESKL-AIKIDCMIFKPLTPSDLFDSLTNDQFIELQQKQAQL 979
Query: 871 RNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH 930
+N +L M + +IL+V+DN VN VA+A LK+ G + + G +A L
Sbjct: 980 QN-KLTKMVATN-FSQPQILLVEDNKVNQVVASALLKQAGVSFDIAQNGFEAIVKLNTKQ 1037
Query: 931 --QFDACFMDIQMPEMDGYE 948
++ MD QMPEMDGY+
Sbjct: 1038 GEPYELILMDCQMPEMDGYQ 1057
>gi|218532769|ref|YP_002423585.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
CM4]
gi|218525072|gb|ACK85657.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
CM4]
Length = 700
Score = 219 bits (557), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 169/546 (30%), Positives = 257/546 (47%), Gaps = 97/546 (17%)
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
E K +AEAA+VAKS+FLATVSHE+RTP+NG+LGM D+L+DT LD Q+ YV + SGKA
Sbjct: 166 EAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKA 225
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L+ L++ +LD +++E+G+L+L A F++ A+++ V+ L + ++QDKG+E+A+ I+D +
Sbjct: 226 LLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAA 285
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 604
+GD R RQI+ NL GN+IKFT+ G + V++
Sbjct: 286 LRVGDADRVRQILVNLAGNAIKFTQTGGVGVSLA-------------------------- 319
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
++ + G L+++VEDTG GIP E +F F Q
Sbjct: 320 -----------RSGEEQGE------------GLVLTVEDTGPGIPEERIPILFEEFEQGD 356
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
S S H GTG+GL+I++ LV RM G I S GSTF
Sbjct: 357 DSAS--HEGTGLGLAITRRLVERMNGTIEARSTMGRGSTFRVMLPLPAAEGA-------- 406
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ---LQCLSQIASG 781
M+ + S++ K L+V P +A + R G VV+ L LS +A
Sbjct: 407 MSPETPSLAPR----KVLIVAASPYQAPFLARRLSRSGAAAVVVNSAEAGLDALSGVAFD 462
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
+ I + L D +V L R G + L LL S R + +
Sbjct: 463 ALIADRSL-------GDAAVRRLAAEAAR---SGVRCSLILL--SPFDRREFGAPNAAGF 510
Query: 842 PSVIMKPLRSSML----------------AASLQRAMGVGNKGNIRNWELPS---MSLRH 882
S ++KP+R+ L A+ Q G + + S +
Sbjct: 511 DSYLIKPVRARSLFDRLLEPRPTPARSPADATAQPGPAKTASGKTASGKTASSKTAPTKT 570
Query: 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
+ GR++L+ +DN +N +A L+R GA V+ G +A FD +DI+MP
Sbjct: 571 VAPGRRVLLAEDNPINALLATKALERLGAQVIHARDGLEALAAAEGQGPFDLALIDIRMP 630
Query: 943 EMDGYE 948
+DG E
Sbjct: 631 GLDGLE 636
>gi|46914623|emb|CAG21400.1| putative sensor histidine kinase/response regulator [Photobacterium
profundum SS9]
Length = 903
Score = 219 bits (557), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 170/536 (31%), Positives = 261/536 (48%), Gaps = 106/536 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T L +Q DY+ T + S L+
Sbjct: 256 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTRLSSSQHDYLLTIEKSANNLL 315
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+GKL LE + F+ LD+V+ L + + +KG+EL + + DR+P L
Sbjct: 316 TIINDILDFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLKVDDRIPAGL 375
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q++TNL+GN++KFTE+G+I V+V EL +SK+
Sbjct: 376 IGDPLRIQQVVTNLIGNAVKFTERGNIDVSV--------------ELKASKD-------- 413
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ I L +V DTG GI Q+++F F Q S
Sbjct: 414 --------------------------ESIELQFTVRDTGIGISERQQAQLFQAFSQADAS 447
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT-AVFGNGSSTSNEHNSQQM 725
ISR +GGTG+GL I++ LV +M GEI S + GSTF F+ ++ S
Sbjct: 448 ISRRYGGTGLGLVITQKLVTQMGGEISLTSRLHQGSTFWFSLSMLKTDLPVS-------- 499
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII 785
QP ++ G K L+++P A + + QRL I +G +
Sbjct: 500 --QPIDTTA-LVGQKVLLIEPNMQAASIVQ---QRL----------------IKAGMFVT 537
Query: 786 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 845
+ +EV + L L G Q + +L + + + T +S+P+
Sbjct: 538 YRSTMPEEVEHHQFA--------LICLPPGQQPPIAILLDRVFKAEQVTDKVIISLPTTE 589
Query: 846 MKPLRSSMLAASLQRAMG-----------VGNK-GNIRNWELPSM-SLRHLLLGRKILIV 892
+ L ++ A + +G + NK +I EL S+ + ++ V
Sbjct: 590 LA-LSERLINAGVSACLGKPLSHRKLFEVLNNKPDDIFEPELLSLPETAQKIEPLTVMAV 648
Query: 893 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ--FDACFMDIQMPEMDG 946
DDN NLK+ +A L V+ G+KA E HQ FD FMDIQMPEMDG
Sbjct: 649 DDNPANLKLISALLSERVETVITATGGRKAVEY---AHQKAFDLIFMDIQMPEMDG 701
>gi|359463382|ref|ZP_09251945.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris sp. CCMEE 5410]
Length = 755
Score = 219 bits (557), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 163/515 (31%), Positives = 247/515 (47%), Gaps = 71/515 (13%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
K FLA +SHEIRTPMNGV+GM +L+DTEL QQ+Y T + SG +L++LIN++LD +
Sbjct: 236 KDDFLAMMSHEIRTPMNGVIGMTGLLLDTELTPQQQEYTETIRKSGDSLLTLINDILDYS 295
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+GKL+LE +FN+R ++D L L + + K +ELA + VP+ ++GD R RQI
Sbjct: 296 KIEAGKLDLEKQAFNVRVCVEDALELVASRVGPKEIELAGVVEPDVPQAILGDVTRLRQI 355
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+ NL+GN+IKFT+ G + V V
Sbjct: 356 LVNLLGNAIKFTQSGEVVVNV--------------------------------------- 376
Query: 617 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
S PF + + L L +V DTG GIP E Q+R+F F QV S +R GGTG+
Sbjct: 377 ------SAEPFAADTP-LYELSFAVRDTGMGIPAERQNRLFKSFSQVDSSTTRKFGGTGL 429
Query: 677 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 736
GL+I K L M G I S GSTF FT + E + + P +
Sbjct: 430 GLAICKRLSELMGGRIWVESEEGQGSTFAFTI-----QAEETEDTTVVAQSLP---AVTL 481
Query: 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE 796
+ + LVVD +V + ++ +V + + L + ++ +++ ++ E
Sbjct: 482 KDKRVLVVDDNDTNQRVLTLQTESWKMKPQVAASGYEALGLLEHAGP-FDIAILDMQMPE 540
Query: 797 KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV-IMKPLRSSMLA 855
D +R G + +L S +A S+ S + KP++ S L
Sbjct: 541 MD---GLTLAQKIRSHPRGANFPMVMLT---SIGQAPDLAHHKSLFSAWLNKPIKQSQLY 594
Query: 856 ASLQRAMGVGNKGNIRNWELPS----MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGA 911
+L +++ GN+ ++ P M+ RH L KIL+ +DN VN K+A L + G
Sbjct: 595 NALVKSL-TGNEVKTQSSTAPQLDTEMADRHPL---KILLAEDNPVNQKLAVLILAKMGY 650
Query: 912 AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
V G + + L +D MD+ MPEMDG
Sbjct: 651 RPDVVGNGLEVLQAL-KRQSYDVILMDVNMPEMDG 684
>gi|359779983|ref|ZP_09283210.1| sensor/response regulator hybrid [Pseudomonas psychrotolerans L19]
gi|359372599|gb|EHK73163.1| sensor/response regulator hybrid [Pseudomonas psychrotolerans L19]
Length = 922
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 160/525 (30%), Positives = 242/525 (46%), Gaps = 74/525 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+K A A KS+FLA +SHEIRTP+NG++G +++ +EL QQDY+ T Q S ++L+
Sbjct: 276 RKAALEASRIKSEFLANMSHEIRTPLNGIIGFTNLMQKSELTPRQQDYLSTIQNSAESLL 335
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+INE+LD +K+E+GKL LE + FNLR ++ D L++ + + +K +EL + P L
Sbjct: 336 GIINEILDFSKIEAGKLVLENLPFNLRDMIQDTLTILAPSAHEKHLELVCLVYRDTPTHL 395
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R RQ++TNL+ N+IKFT G I V + EE D +
Sbjct: 396 VGDPQRLRQVLTNLVSNAIKFTHSGTIAVRAMVEEETDDHAQ------------------ 437
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
L +SV+DTG G+ E + +F F Q S
Sbjct: 438 ------------------------------LRISVQDTGVGLTDEDRQMLFQAFSQADNS 467
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
++R GGTG+GL ISK L+ +M GEIG SIP GS F T + H
Sbjct: 468 LTRQAGGTGLGLVISKRLIEQMGGEIGLESIPGEGSEFWITLNLPKAHGSVESHK----- 522
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS--DQL-QCLSQIASGSK 783
G + +V+P P+ + ++ ++ G+ VE +QL + ++ ASG
Sbjct: 523 ------RIALAGRRVGLVEPHPLTRQALQHQLEECGLSVEPFETLEQLSEAVAHPASGKL 576
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
+++ ++ + T + L + C + + + S+P
Sbjct: 577 PVSLAVLGVSARSIPPDLLTERIWELGRQDCN---------TLVYCPTTDQAVFHASLPD 627
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
V + S A S + V N R S L ++L VDDN NL +
Sbjct: 628 VHCQ--LHSKPACSRKLEQAVAELLNQRPQRNESGGLGITDRPPRLLCVDDNPANLLLVE 685
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L GA V VE G A E + +FD FMD+QMP MDG +
Sbjct: 686 TLLTDLGAQVTAVESGYAAVEAVQ-QERFDLVFMDVQMPGMDGRQ 729
>gi|329928573|ref|ZP_08282440.1| signal transduction histidine-protein kinase BarA [Paenibacillus
sp. HGF5]
gi|328937689|gb|EGG34098.1| signal transduction histidine-protein kinase BarA [Paenibacillus
sp. HGF5]
Length = 559
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 127/368 (34%), Positives = 205/368 (55%), Gaps = 57/368 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++AE A AK++FLA +SHEIRTPMNGV+GM+D+LMD+EL Q++Y + S ALV
Sbjct: 159 KEEAEIAAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSELQDEQREYATIIRNSADALV 218
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+ESGK+ELE F+L++ + +V LFSG++ K +EL +I D++P +
Sbjct: 219 NIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLELTYFIEDQIPSMV 278
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD GR RQ++ NL+ N++KFT +G +++ V L + + +N L+
Sbjct: 279 FGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLAK-------------AEENRLT----- 320
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
L +V+DTG GI + R+F PF Q+ S
Sbjct: 321 ------------------------------LEFTVKDTGIGISSKKLDRLFKPFSQLDSS 350
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
++R +GGTG+GL+I K LV M GEI S G+TF FT ++E ++
Sbjct: 351 MTRRYGGTGLGLAICKSLVQMMGGEIEVDSKEGEGATFVFTICV-----HTHEEEHPRLR 405
Query: 727 NQPNSVSSEFQGMKA---LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 783
+ +S G + L+VD PI K+ ++++G+ ++ D Q + ++A+G K
Sbjct: 406 EEEHSGKYRVHGGRQPNILIVDDHPINRKLMESMLEKMGMNADMAEDGRQAV-EMAAGPK 464
Query: 784 IINMILVE 791
+MI ++
Sbjct: 465 AYDMIFMD 472
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Query: 886 GRK--ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
GR+ ILIVDD+ +N K+ + L++ G E G++A E+ P +D FMD+QMP
Sbjct: 418 GRQPNILIVDDHPINRKLMESMLEKMGMNADMAEDGRQAVEMAAGPKAYDMIFMDLQMPV 477
Query: 944 MDGYE-------MLPCFESFLLIAI 961
MDG E M P ++ +L+A+
Sbjct: 478 MDGLEAARLIRQMKPEADAPVLVAM 502
>gi|260899636|ref|ZP_05908031.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
gi|308110560|gb|EFO48100.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
Length = 932
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 183/618 (29%), Positives = 289/618 (46%), Gaps = 98/618 (15%)
Query: 346 SMYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH 404
S++ S + D ++ + N D R+ + R + K L + I + ++ H
Sbjct: 190 SVFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYH 249
Query: 405 ------IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGV 455
I QAT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV
Sbjct: 250 VEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGV 309
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
+G ++ T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F+ R
Sbjct: 310 IGFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRES 369
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
L++V++L + + +KG+E+ + + ++P L+GDP R +QI+TNL+GNSIKFTE+G+I V
Sbjct: 370 LEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDV 429
Query: 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 635
+V + + DS+E++
Sbjct: 430 SVEMRSQAGDSVELQ--------------------------------------------- 444
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
V DTG GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI
Sbjct: 445 ---FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLT 501
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAK 752
S + GSTF FT NS +M P S E + G + L+V+P A
Sbjct: 502 SRLHQGSTFWFTLRL----------NSTEM---PMSDLIEVELLTGKQLLLVEPNMQAAS 548
Query: 753 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 812
V++ + + GI V S L + + + L + + D T ++ +++
Sbjct: 549 VTQQILSQEGILVTYRS----SLPENEEHYDYVLLNLAANQTY--DEQSVTAWIEQAKRM 602
Query: 813 GC----GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG 868
G S LA+ I + + KPL L SL +
Sbjct: 603 ASSVIMGTPSTELALADQIMTEHQ---------IQCLTKPLSRRKLLQSLINEHVEAPQA 653
Query: 869 NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 928
P + L +L VDDN NLK+ +A LK V G++A L
Sbjct: 654 ----ITAPVETEESERLPLTVLAVDDNPANLKLISALLKERVETVTACSNGQQAVN-LAT 708
Query: 929 PHQFDACFMDIQMPEMDG 946
++D FMDIQMP MDG
Sbjct: 709 EKKYDLIFMDIQMPLMDG 726
>gi|218547698|ref|YP_002381489.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii ATCC
35469]
gi|422807992|ref|ZP_16856420.1| hsp90-like protein [Escherichia fergusonii B253]
gi|424815154|ref|ZP_18240305.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii
ECD227]
gi|218355239|emb|CAQ87846.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia fergusonii ATCC 35469]
gi|324111190|gb|EGC05173.1| hsp90-like protein [Escherichia fergusonii B253]
gi|325496174|gb|EGC94033.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii
ECD227]
Length = 918
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 170/535 (31%), Positives = 253/535 (47%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 TIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKGDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE+G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTERGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + ++ P S Y I LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVIYSPTFSALPESHYDIMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ + E +K +++ L L C Q +
Sbjct: 592 --------------LTLHHERLDKAVAMTDFL---LLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
+GV + ++KPL S+ L +L+ GNK I + S L ++ VD
Sbjct: 624 LKQEGVG--ACLLKPLTSTRLLPALKE---FGNKNQIHSLS----STDENKLAMTVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDKVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|90412091|ref|ZP_01220098.1| putative sensor histidine kinase/response regulator [Photobacterium
profundum 3TCK]
gi|90327069|gb|EAS43448.1| putative sensor histidine kinase/response regulator [Photobacterium
profundum 3TCK]
Length = 897
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 170/530 (32%), Positives = 254/530 (47%), Gaps = 94/530 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T L +Q DY+ T + S L+
Sbjct: 250 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTRLSSSQHDYLLTIEKSANNLL 309
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+GKL LE + F+ LD+V+ L + + +KG+EL + + R+P L
Sbjct: 310 TIINDILDFSKLEAGKLLLENIPFDFTESLDEVMRLLAPSAHEKGLELTLKVDHRIPAGL 369
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q++TNL+GN++KFTE+G+I V+V EL +SK+
Sbjct: 370 IGDPLRIQQVVTNLIGNAVKFTERGNIDVSV--------------ELKASKD-------- 407
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ I L +V DTG GI Q+++F F Q S
Sbjct: 408 --------------------------ENIELQFTVRDTGIGISERQQAQLFQAFSQADAS 441
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT-AVFGNGSSTSNEHNSQQM 725
ISR +GGTG+GL I++ LV +M GEI S + GSTF F+ + S
Sbjct: 442 ISRRYGGTGLGLVITQKLVTQMGGEISLTSRLHQGSTFWFSLKMLKTDLPVS-------- 493
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV-------EVVSDQLQCLSQI 778
QP +S G K L+++P A V + + R G+ V E V L +
Sbjct: 494 --QPIDTTS-LVGQKVLLIEPNMQAASVVQQRLIRAGMFVTYRSTMPEEVEHHHFALICL 550
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
G + IL+++ K V+ + +L +L G
Sbjct: 551 PPGQQPPIAILLDRVF--KAEQVTDKVIVSLPTTELALSERLI--------------NAG 594
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 898
VS + + KPL L L + + + P+ + L ++ VDDN N
Sbjct: 595 VS--ACLGKPLSHRKLFEVLNNEPDDILEPELLSLPEPAQKIEPL----TVMAVDDNPAN 648
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ--FDACFMDIQMPEMDG 946
LK+ +A L V+ G+KA E HQ FD FMDIQMPEMDG
Sbjct: 649 LKLISALLSERVETVITATGGRKAVEY---AHQKAFDLIFMDIQMPEMDG 695
>gi|347756505|ref|YP_004864068.1| Signal transduction histidine kinase [Candidatus
Chloracidobacterium thermophilum B]
gi|347589022|gb|AEP13551.1| Signal transduction histidine kinase [Candidatus
Chloracidobacterium thermophilum B]
Length = 780
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 170/526 (32%), Positives = 252/526 (47%), Gaps = 70/526 (13%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KS FLA +SHEIRTPMNGV+GM ++L T L Q++Y+ T ++S ++L+ ++N++LD +
Sbjct: 237 KSAFLANMSHEIRTPMNGVIGMSNLLASTPLSGEQREYLETIRSSAESLLVILNDILDFS 296
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+G L +E F+LR ++ L + + + K +++A I D VP T++ DP RFRQ+
Sbjct: 297 KIEAGALHIEQTPFDLRECIESTLDVIAEPASRKRLDVAYLIEDNVPTTIVSDPTRFRQV 356
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+ NL+ N+IKFTE+G + VTV S E L + +L+ DR ++
Sbjct: 357 LLNLLSNAIKFTEQGEVVVTV--------SAE---PLDDDEPSLTKLTANDRPRRYE--- 402
Query: 617 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
L V V DTG GIP EA R+F F Q + R +GGTG+
Sbjct: 403 --------------------LRVDVRDTGIGIPPEAHGRVFRDFEQATETTYRVYGGTGL 442
Query: 677 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 736
GL+ISK LV + G I F S G+TF FT S N+ + P E
Sbjct: 443 GLAISKRLVEMLGGNIWFESEVGRGTTFHFTL---PCESAPNQPRVYVRGSLP-----EL 494
Query: 737 QGMKALVVDPRPIRAKVSRYHIQ---RLGIQVEVVSDQLQCLSQIASGSKIINMILVEQE 793
+ ALVVD + Y ++ L + ++ L CL Q G+K+ IL +
Sbjct: 495 ENKIALVVDDNATNRHILEYQLRAWHALPLMAASAAEALHCLQQ--PGTKVDIFIL---D 549
Query: 794 VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM-KPLRSS 852
V D TL R+ LF + S +A ST PS +M KP+R +
Sbjct: 550 VQLPDMDGLTLAREIRRQPAYARTPILFFGSTMEESLKAQLSTFA---PSAMMPKPIRLT 606
Query: 853 MLAASLQRAMGVGNKGNIRNWELPS--MSLRHLLLGR----KILIVDDNNVNLKVAAAGL 906
L+ + R PS L LG+ ++L+V+DN VN K+A L
Sbjct: 607 RFQRQLEELLAP------RPEPAPSTPQPLFDATLGQQHPLRVLVVEDNVVNRKLAVRML 660
Query: 907 KRYGAAVVCVERGKKATELLMPP----HQFDACFMDIQMPEMDGYE 948
++ G G + E ++ +D FMD+QMP DG E
Sbjct: 661 EKLGYQPDTASDGIEGVEAILGAVACEKPYDLVFMDVQMPGKDGLE 706
>gi|334129574|ref|ZP_08503378.1| Sensor protein [Methyloversatilis universalis FAM5]
gi|333445259|gb|EGK73201.1| Sensor protein [Methyloversatilis universalis FAM5]
Length = 870
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 170/567 (29%), Positives = 264/567 (46%), Gaps = 82/567 (14%)
Query: 398 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
+ S+ G I R A+VE ++ K+KAEAA AKS FLA +SHEIRTPMNG++G
Sbjct: 150 VVSVSGLIGLLDARRQAEVE-----LLRAKEKAEAASRAKSDFLANMSHEIRTPMNGIMG 204
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
M +L DT LD Q++YV + S AL+ +IN++LD +K+E+GKL +E V ++
Sbjct: 205 MSALLQDTSLDSEQREYVHAIKTSADALLVIINDILDFSKIEAGKLAIEEVECVPSDLVG 264
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
+ + +Q KGVEL I+ +P ++GDPGR RQI+ NL+GN++KFTE+G I V
Sbjct: 265 EAARGLAIGAQQKGVELYCRIAPDLPRRVLGDPGRMRQILVNLIGNAVKFTERGEIEVGC 324
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 637
V G P S+ D L
Sbjct: 325 EAV---------------------GMP------------------------SAVGDHAEL 339
Query: 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697
+ V DTG GI Q+ +F F Q S +R GGTG+GL+I LV M G + S
Sbjct: 340 HLWVRDTGIGIDAAKQALVFEAFAQADTSTTRRFGGTGLGLAICNRLVSLMGGRLWLEST 399
Query: 698 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 757
P GSTF FT + + Q+ F G++ L+++ P
Sbjct: 400 PGQGSTFHFTMRCRVLEAAGLSPHFQR-----------FPGLRVLLIEDHPPSRSAVAAM 448
Query: 758 IQRLG---IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814
+ +G + V V Q L Q + ++++V++ + ++D + FV+ + G
Sbjct: 449 LGDMGASALAVGAVQAARQALRQAHDSGRPFDILMVDRTLPDED---AFDFVSGFCE-GP 504
Query: 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 874
+++ ++ + + + N + + + KP + LA +L A+ + +
Sbjct: 505 NRLNRVVMMLSGANQAADNALARSLGVRGRLHKPFSAGELATALTDALSSQPDDSAHELD 564
Query: 875 LPSM---------SLRHLLLG----RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK 921
++ SL H LG R +L+ +DN VN VA L+R G V G++
Sbjct: 565 DFALTIGDLDIERSLVHSGLGSATVRHVLLAEDNPVNQLVAVRTLERAGYKVTVANNGQE 624
Query: 922 ATELLMPPHQFDACFMDIQMPEMDGYE 948
A +L+ FD MD+QMP M G E
Sbjct: 625 ALDLI-DSESFDVVLMDVQMPVMGGIE 650
>gi|239905593|ref|YP_002952332.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239795457|dbj|BAH74446.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 1248
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 177/543 (32%), Positives = 254/543 (46%), Gaps = 79/543 (14%)
Query: 419 DYHGMMELKKK--------AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT 470
DY MEL K A+ A AK FLA +SHEIRTPMNGV+GM +L+DT L
Sbjct: 569 DYANRMELTNKQLNIALARADEAAKAKGDFLANMSHEIRTPMNGVIGMAGLLLDTSLTDE 628
Query: 471 QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDK 530
QQ + T ++SG+ L+ L+N++LD +K+E+GKLELE V F+L ILDDV+ + S K
Sbjct: 629 QQRFAETIRSSGELLLLLVNDILDFSKIEAGKLELEIVDFDLVQILDDVMDSMAVGSHSK 688
Query: 531 GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 590
G+EL VP L GDP R RQI++NL+GN+IKFT +G + V V +V E
Sbjct: 689 GLELLCATDPSVPYQLQGDPARLRQILSNLVGNAIKFTVQGQVSVRVSIVNE-------- 740
Query: 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 650
+D I L SV DTG GI
Sbjct: 741 ---------------------------------------KESDCI-LKFSVSDTGIGIQS 760
Query: 651 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710
+ Q IF F QV S +R GGTG+GL+ISK LV M G IG S G++F FTA
Sbjct: 761 DKQVLIFEQFNQVDASTTRKFGGTGLGLAISKRLVEMMGGTIGVESNLGEGASFWFTACL 820
Query: 711 GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 770
S + E + +SS FQG + LVVD + + G++ E+ D
Sbjct: 821 KKRDSITEESSV--------CLSSFFQG-RVLVVDDNVTSCENLFTQLNSWGLKTEIAMD 871
Query: 771 ---QLQCLSQIASGSKIINMILVEQEVWEKD-TSVSTLFVNNLRKLGCGFQSKLFLLANS 826
LQ L ++ + +++++ + D ++ ++ R F S + S
Sbjct: 872 GPSALQALYKVINVEDFYKVVIIDVHLPGMDGVALGQTIRSDHR-----FDSVKIIFMTS 926
Query: 827 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG 886
+ + D VS + KP+ L + L R V + N + L + H
Sbjct: 927 LGGNCRQYCHD-VSNADCLSKPVHYRDLRSMLGRFFEVNSCQNRQTENLHGSNNEHAFQF 985
Query: 887 R---KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
+IL+ +DN N +VA L ++G V V G +A + + +D MD+ MP
Sbjct: 986 SSEWRILLAEDNITNQQVAKGILNKFGLNVDVVSNGLEAV-VALESEAYDLVLMDMHMPT 1044
Query: 944 MDG 946
+DG
Sbjct: 1045 LDG 1047
>gi|392408688|ref|YP_006445295.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
gi|390621824|gb|AFM23031.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
Length = 1109
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 161/541 (29%), Positives = 256/541 (47%), Gaps = 65/541 (12%)
Query: 419 DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 478
D + E K++AE AD++KS+FLA +SHEIRTPMN ++GM ++ +TEL Q++Y++T
Sbjct: 447 DVTELAEAKRQAEQADLSKSRFLANMSHEIRTPMNAIIGMAELAQNTELTPVQREYIQTI 506
Query: 479 QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 538
+ SG +L+++IN++LD +K+E+GKL++ V +L + + + ++ KG+EL I
Sbjct: 507 ETSGHSLLAIINDILDFSKIEAGKLQISFVGLSLTDCVCGSVHSLASQAHAKGLELVCRI 566
Query: 539 SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 598
+ +P+ LIGDP R RQII NL+GN+IKFT KG + V V S+
Sbjct: 567 APGIPDHLIGDPERIRQIIINLVGNAIKFTHKGEVLVEVEEESR------------SAHQ 614
Query: 599 TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 658
L + V+D TG GIP + Q +F
Sbjct: 615 VLLHFKVSD------------------------------------TGIGIPRQKQKTVFC 638
Query: 659 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 718
F Q S SRT+GGTG+GL+IS LV M G I S P GS F F S+
Sbjct: 639 AFEQADSSTSRTYGGTGLGLAISSQLVELMGGNIWVESSPGKGSVFNFRIPMEIHSAPPE 698
Query: 719 EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
SQ + +G + L+VD ++ + + G+ V + L +
Sbjct: 699 IPVSQDLRT--------LKGTRVLIVDDNATNRRILVELLIQWGMIPSAVDNGRTALKTL 750
Query: 779 ASGSKI---INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 835
K+ M+LV+ + E D + + + +L + + +L +++ A
Sbjct: 751 RERYKMGTPFAMVLVDCMMPEMDGFQVSEAIKAIPELA---STHIIMLTSALPDYSAEKC 807
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
I + ++KP+ S L +++ + G K + E +R +IL+ +DN
Sbjct: 808 R-AAGIETCLLKPIHKSNLYSAIHELLS-GAKSDSSLEETARRKVRKTERPLRILLAEDN 865
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFES 955
N KVA+ L G ++ V G +A E FD MD+QMP MDG+E +
Sbjct: 866 AFNQKVASGMLSGMGHSISVVPNGAEAVEAYT-RGGFDVILMDVQMPLMDGFEATAAIRA 924
Query: 956 F 956
F
Sbjct: 925 F 925
>gi|330446946|ref|ZP_08310597.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491137|dbj|GAA05094.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 931
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 170/533 (31%), Positives = 258/533 (48%), Gaps = 99/533 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L+ +Q+DY+ T + S L+
Sbjct: 280 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTKLNTSQKDYLLTIENSANNLL 339
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+GKL LE + F+ LD+V+ L + + +KG+EL + I +R+P L
Sbjct: 340 TIINDILDFSKLEAGKLLLENIPFDFTDSLDEVMRLLAPSAHEKGLELTLKIDNRIPPGL 399
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q++TNL+GN++KFTE G+I V+V L ++ ++IE++
Sbjct: 400 IGDPLRIQQVVTNLIGNAVKFTEHGNIDVSVELKSDIDNNIELQ---------------- 443
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
V DTG GI Q+++F F Q S
Sbjct: 444 --------------------------------FMVRDTGIGISERQQAQLFQAFSQADAS 471
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR +GGTG+GL I++ LV +M GE+ S + GSTF FT + +
Sbjct: 472 ISRRYGGTGLGLVITQKLVSQMGGEVSLTSRLHQGSTFWFTIKM---------NKTDLPV 522
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ----------LQCLS 776
+QP +S +G L+V+ A V + + G+ V + L CLS
Sbjct: 523 SQPIDTTS-LEGKSLLLVEANMQAASVIQQRLMLAGVHVTYRASMPDDIDHHDFALLCLS 581
Query: 777 --QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 834
+ I+N + ++ EK L C ++L L S T
Sbjct: 582 PGEQPPLPVILNDVFKAEQTAEK-------------VLVCLPTTELAL-------SEKLT 621
Query: 835 STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM-SLRHLLLGRKILIVD 893
T GVS + + KPL L A+ + E+P + + L ++ VD
Sbjct: 622 QT-GVS--ACLGKPLAQR----KLFEALCDNDDEQQSELEVPLLPTTTETLQPLTVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
DN NLK+ +A L V+ GKKA E FD FMDIQMPEMDG
Sbjct: 675 DNPANLKLISALLGERVETVITATGGKKAVEYAQ-SKAFDLIFMDIQMPEMDG 726
>gi|337265957|ref|YP_004610012.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
WSM2075]
gi|336026267|gb|AEH85918.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
WSM2075]
Length = 1255
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 169/562 (30%), Positives = 260/562 (46%), Gaps = 102/562 (18%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ E +++A AD AKS+FLA +SHEIRTPMNGVLGM ++L + LD Q+ + SG
Sbjct: 690 LREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDPKQKTFTDIIVKSG 749
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
AL+++IN++LD +K+++G+L L+ FNL ++DV +L S ++++K +EL V I R+
Sbjct: 750 NALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRIEPRL 809
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
IGD GR RQI+TNL+GN++KFT++GH+ V V
Sbjct: 810 GSLFIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVT------------------------ 845
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
G P + L +SV DTG GIP E +F F Q
Sbjct: 846 -------------------GERMPTGT------KLTISVTDTGIGIPEEKLKLVFEKFSQ 880
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +R H GTG+GL+I+ LV M G+IG S GSTF F ++ + N
Sbjct: 881 VDTSSTRRHEGTGLGLAITSRLVELMGGKIGVESAEGKGSTFWFEVTL----PSAEQQNG 936
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSDQLQCLSQIA 779
Q++ P V+ G + L+VD + + + E ++ L+ L A
Sbjct: 937 QRI--MPVDVT----GARVLIVDDNAVNRAILTEQMTSWTFDSCAAESGAEGLKVLIAAA 990
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
+ ++ ++++ ++ + V N G + ++ S+ S ANTS +
Sbjct: 991 AYGVPVDCVVLDYQMPGMSGAEMARIVRNT----AGLANTPIIMLTSVDQSLANTSYRDL 1046
Query: 840 SIPSVIMKPLRSSMLAASL------QRAMGVGNKGNIRNWELPSMSLRHLLL-------- 885
I + ++KP RSS+L +L R VG+ E P+ R L
Sbjct: 1047 GIDAQLIKPARSSVLLETLVATVQRHRHTTVGHAAQPSAGEAPNAPQRQSLAPSEQRAQL 1106
Query: 886 ---------------GRK--ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 928
G++ IL+ +DN VN V L G V G+KA +
Sbjct: 1107 QPPPVRPRLPAVGGDGQRLDILVAEDNEVNQMVFTQILGETGYGFEIVSNGRKALDAF-- 1164
Query: 929 PHQFDAC--FMDIQMPEMDGYE 948
+ + C MD+ MPEM G E
Sbjct: 1165 -GKLNPCMILMDVSMPEMSGLE 1185
>gi|427711336|ref|YP_007059960.1| PAS domain-containing protein [Synechococcus sp. PCC 6312]
gi|427375465|gb|AFY59417.1| PAS domain S-box [Synechococcus sp. PCC 6312]
Length = 1054
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 167/542 (30%), Positives = 250/542 (46%), Gaps = 78/542 (14%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
AKS FLAT+SHEIRTPMN ++G+ +L+D EL Q +++ T +ASG AL+SLIN++LD
Sbjct: 487 AKSDFLATMSHEIRTPMNAIIGLTGLLLDMELTEQQHEFLNTIRASGDALLSLINDILDF 546
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+ESG+LE+EA F+LRA ++ L L +G++ ++G+ELA ++ P + GD GR RQ
Sbjct: 547 SKIESGRLEIEAYPFDLRACAEEALDLLAGRANEQGLELAYHMEPNTPVAVTGDMGRLRQ 606
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
I+ NL+GN++KFT G V +Y+ + + + ++++T YP+ H F
Sbjct: 607 ILVNLIGNALKFTAAGE--VVLYIQAHPLTPVNPDPTPEATEDT--HYPI----HQPYVF 658
Query: 616 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
+ ++ DTG GI + +R+F PF QV S +R GGTG
Sbjct: 659 Q----------------------FAIRDTGIGISPQGVTRLFQPFSQVDASTTRYFGGTG 696
Query: 676 IGLSISKYLVGRMKGEI-------------------GFVSIP-----NIGSTFTFTAVFG 711
+GL+I K L M G I GF P N GSTF FT
Sbjct: 697 LGLAICKRLAEAMGGTIWLESCDGSGKLAKAGQPHSGFTPSPSSQLTNRGSTFYFTVTM- 755
Query: 712 NGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ 771
N Q + + QG K L+VD ++ ++ + D
Sbjct: 756 -------PVNLQAEEQKSAHTIASLQGRKVLIVDDNATNRQILELQTTSWHMEPQAYPDA 808
Query: 772 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS-S 830
L+ + +G+ IL D + + L + G ++ L +SS
Sbjct: 809 KSALTALKAGANFDLAIL--------DLHMPHMNGLELGQAIHGLEAHKHLPLIMLSSVG 860
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL---PSMSLRHL---L 884
+ N + I KP++ S L L R + + P S+ L L
Sbjct: 861 QGNALIASQHFAAAIAKPIKQSALFNVLLRILNEFQASQTVQKPVTLSPETSMADLAKHL 920
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
KIL+ +DN VN VA L+R G V G + L +D MD+QMPEM
Sbjct: 921 PPLKILLAEDNKVNQMVALRILERLGYRADVVANGLEVLAALQ-RQPYDVVLMDMQMPEM 979
Query: 945 DG 946
DG
Sbjct: 980 DG 981
Score = 42.0 bits (97), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
L GRK+LIVDDN N ++ + K A L FD +D+ MP
Sbjct: 773 LQGRKVLIVDDNATNRQILELQTTSWHMEPQAYPDAKSALTALKAGANFDLAILDLHMPH 832
Query: 944 MDGYEM 949
M+G E+
Sbjct: 833 MNGLEL 838
>gi|296120946|ref|YP_003628724.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
gi|296013286|gb|ADG66525.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
Length = 1322
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 158/515 (30%), Positives = 243/515 (47%), Gaps = 70/515 (13%)
Query: 438 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497
SQFLA +SHEIRTP+NGV+GMLD+L T LD Q+ YV ++S L+ LIN++LD +K
Sbjct: 611 SQFLAKMSHEIRTPLNGVIGMLDLLKATSLDDRQKRYVTICRSSADTLLGLINDILDLSK 670
Query: 498 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 557
+E+G++EL V F+L +++D+ +F +++ KGVELA +I+ VP+ + GDP R RQI+
Sbjct: 671 IEAGRMELALVDFDLHQLVEDISEMFVHRAEGKGVELACHIAPDVPQRIEGDPERLRQIL 730
Query: 558 TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 617
NL+GN++KFT G++ + V + + P +
Sbjct: 731 VNLVGNALKFTSVGYVLIKVSMAQS---------------------PTGEH--------- 760
Query: 618 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 677
L + V+DTG GI Q ++F PF Q + SR GGTG+G
Sbjct: 761 ------------------RLQIHVKDTGIGISPAQQQKLFQPFTQADVTTSRRFGGTGLG 802
Query: 678 LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 737
LSI + L M+G I S +G+TFT TS E + ++P
Sbjct: 803 LSICRQLADLMQGSIQIESAVGVGTTFTVDLPL-----TSAEVSKVAPEHEP------LA 851
Query: 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVE---VVSDQLQCLSQIASGSKIINMILVEQEV 794
G++ L+VD I ++ H+ G +V L LS+ A+ ++ ++++++
Sbjct: 852 GLRVLLVDDNEINLEILSEHLVAWGCRVSKCLSAETALSLLSKPATTGPAFSIAIIDKQM 911
Query: 795 WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI-PSVIMKPLRSSM 853
D + ++RK S L+ S+ S A + DG+ + I KP+R+
Sbjct: 912 PGFD---GEMLAGSIRKYA-HLDSLRILMLTSVDFSDA--AVDGIPPWDAWINKPVRAGR 965
Query: 854 LAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAV 913
L LQ+ N R +ILI DDN VNL V ++ G
Sbjct: 966 LLEMLQKLRDYVPLENARELSAQQPLSETKTPSARILIADDNEVNLIVTTELVRSLGFDT 1025
Query: 914 VCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G E L +D MD QMP +DG+E
Sbjct: 1026 ETAADGSIVLEKL-KSQTYDLILMDCQMPTLDGFE 1059
>gi|291086239|ref|ZP_06571413.1| sensor protein GacS [Citrobacter youngae ATCC 29220]
gi|291068626|gb|EFE06735.1| sensor protein GacS [Citrobacter youngae ATCC 29220]
Length = 811
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 164/525 (31%), Positives = 253/525 (48%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 176 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 235
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L + S DKG+EL + I + VP+ +
Sbjct: 236 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 295
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 296 IGDPLRLQQVITNLVGNAIKFTEGGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 352
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 353 DQSRLFQAFR---------------------------------------------QADAS 367
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 368 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HISLDLN 414
Query: 727 NQPN-----SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN S S G + V+P A+ + + ++V + S L +
Sbjct: 415 --PNVLVDRSTSRCLAGKRLAYVEPNATAAQCTLDILSETPLEV-IYSPSFSGLPKDHYD 471
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
++ + + +E L + + R + LLA +
Sbjct: 472 ILLLGIPVTFRE---------PLTMQHERLASAAAMTDFLLLALPCHAQINAEKLKQGGA 522
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + + + LP S + ++ VDDN NLK+
Sbjct: 523 AACLLKPLTSTRLLPALTEYCQLNHSA---DQPLPDES----KIAMTVMAVDDNPANLKL 575
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ VV + G +A + QFD MDIQMP+MDG
Sbjct: 576 IGALLEDKVQHVVLCDSGHQAVDRAR-QMQFDLILMDIQMPDMDG 619
>gi|375266660|ref|YP_005024103.1| hybrid sensory histidine kinase BarA [Vibrio sp. EJY3]
gi|369841980|gb|AEX23124.1| hybrid sensory histidine kinase BarA [Vibrio sp. EJY3]
Length = 932
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 180/618 (29%), Positives = 294/618 (47%), Gaps = 98/618 (15%)
Query: 346 SMYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH 404
S++ S + D ++ + N D R+ + R + K L + I + ++ H
Sbjct: 190 SVFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYH 249
Query: 405 ------IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGV 455
I QAT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV
Sbjct: 250 VEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGV 309
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
+G ++ T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F+ R
Sbjct: 310 IGFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRES 369
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
L++V++L + + +KG+E+ + + ++P L+GDP R +QI+TNL+GNSIKFTE+G+I +
Sbjct: 370 LEEVVNLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDI 429
Query: 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 635
+V + + DS+E++
Sbjct: 430 SVEMRSQSGDSVELQ--------------------------------------------- 444
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
V DTG GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI
Sbjct: 445 ---FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLT 501
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAK 752
S + GSTF FT NS +M P S E + G + L+V+P A
Sbjct: 502 SRLHQGSTFWFTLRL----------NSTEM---PMSDLIEIELLTGKQLLLVEPNMQAAS 548
Query: 753 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 812
V++ + + GI V S L + + + L + +++ + + ++ +++
Sbjct: 549 VTQQILSQEGILVTYRS----SLPEANDHYDYVLLNLAANQTYDEQSVEA--WIEQAKQM 602
Query: 813 G----CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG 868
G S LA+ I + KPL L SL +
Sbjct: 603 APSVIMGTPSTELALADQIMKEHQ---------IQCLTKPLSRRRLLQSLISE----HVE 649
Query: 869 NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 928
+ + + P ++ L +L VDDN NLK+ +A LK V G++A L
Sbjct: 650 SPQPLKAPIKTVEEERLPLHVLAVDDNPANLKLISALLKERVETVTACSNGQQAVN-LAT 708
Query: 929 PHQFDACFMDIQMPEMDG 946
++D FMDIQMP MDG
Sbjct: 709 EKKYDMIFMDIQMPHMDG 726
>gi|398885503|ref|ZP_10640413.1| PAS domain S-box [Pseudomonas sp. GM60]
gi|398192413|gb|EJM79568.1| PAS domain S-box [Pseudomonas sp. GM60]
Length = 1516
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 173/577 (29%), Positives = 271/577 (46%), Gaps = 97/577 (16%)
Query: 412 RIAKVEEDYHGMMEL-------KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 464
R+ + D EL K++A+ A AKS FLA +SHEIRTPMN VLGML ++ +
Sbjct: 755 RVTGINRDITSQRELESHLLYAKEQADTASAAKSSFLANMSHEIRTPMNAVLGMLQLVQN 814
Query: 465 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 524
T+L+ Q DYV AQA+ K+L+ L+N++LD +K+E+GKL+L+ F L ++ D+ + +
Sbjct: 815 TDLNGRQLDYVTKAQAAAKSLLGLLNDILDYSKIEAGKLQLDVHPFELEPLMRDLAVVLA 874
Query: 525 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 584
G K VE+ + +P LIGD R +Q++ NL GN++KFT +G I V+V
Sbjct: 875 GNQGQKEVEVMFDLDSNLPNDLIGDSLRLQQVLINLAGNALKFTMEGQIVVSV------- 927
Query: 585 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644
+L ++N+L L ++V DT
Sbjct: 928 ------EQLMRTENSL-----------------------------------KLRIAVSDT 946
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GI E IF F Q S +R GGTG+GL I K LV M GE+ S +GS F
Sbjct: 947 GIGISPEQLQHIFEGFTQAEASTTRRFGGTGLGLVICKRLVSLMGGELQVESQQGVGSRF 1006
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQPNS-VSSEFQGMKA----LVVDPRPIRAKVSRYHIQ 759
F ++ PNS + S+ G+ A LVVD + ++ +
Sbjct: 1007 WFDIT---------------LDVAPNSLLRSDSSGVDASIRILVVDDNAMAGELLLRTVH 1051
Query: 760 RLGIQVEVVSDQLQCLSQIASG---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816
LG + + VS Q + + + + +++L++ + + D + + R+ G G
Sbjct: 1052 ALGWKADHVSGGTQAVEWVKNAQARGEAYDVVLMDWRMSDMDGLSAAQLI---RQQGNGV 1108
Query: 817 QSKLFLLANSISSSRANTSTDGVSIPSV--IMKPLRSSMLAASLQRAMGVGNKGNIRNWE 874
+ ++ + + + P V + KP+ LA ++QRA+ G
Sbjct: 1109 PPPMVIMITAYGREVLADANEMGDAPFVGFLTKPVTPKQLADAVQRAL----NGKGLPQS 1164
Query: 875 LPSMSL---RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH- 930
LPS S L G ++L+V+DN +N +VA L GA V E G + +M +
Sbjct: 1165 LPSKSTVDRPQRLAGLRLLVVEDNMLNRQVADELLTGEGAQVTLAEGGLEGVSRVMAENV 1224
Query: 931 QFDACFMDIQMPEMDGYEML------PCFESFLLIAI 961
FDA MDIQMP++DG E P F + ++A+
Sbjct: 1225 SFDAVLMDIQMPDIDGLEATRRIRSNPRFAALPIVAM 1261
>gi|283786671|ref|YP_003366536.1| two-component sensor kinase/response regulator [Citrobacter
rodentium ICC168]
gi|282950125|emb|CBG89761.1| two-component sensor kinase/response regulator [Citrobacter
rodentium ICC168]
Length = 918
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 161/533 (30%), Positives = 254/533 (47%), Gaps = 102/533 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFALRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTENGNIDILVEKRSISNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F +V +G +T +
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPSVISDGPATMSL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PN+ +++ + ++ P Y I LG+ V
Sbjct: 535 AGKRIAYVEPNATAAQCTLDILSETPLEVIYSPTFSALAAEHYDIMLLGVAVTFKEPLTM 594
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
++ +K+ + +++ L C Q +
Sbjct: 595 QHERLIQATKMTDYLML--------------------ALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DGV+ S ++KPL S+ L +L + N + LP + + ++ VD
Sbjct: 624 LKQDGVA--SCLLKPLTSTRLLPALVELC----RHNHHDNALPVNDRK---IAMTVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L V + G++A + QFD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLDDLVQHVELCDSGQQAVD-RAKQMQFDLILMDIQMPDMDG 726
>gi|242280332|ref|YP_002992461.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
2638]
gi|242123226|gb|ACS80922.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
2638]
Length = 923
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 170/540 (31%), Positives = 258/540 (47%), Gaps = 99/540 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K +AEAA +KS+F+A VSHEIRTPMN ++GM D+ M+T+L Q+++++ +SGK L+
Sbjct: 267 KDEAEAASKSKSEFMANVSHEIRTPMNAIIGMADLTMETDLSSKQREFIKIIISSGKVLL 326
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
LIN++LD +K+E+GKL LE V+FNL ++ D+ LF + EL + I VP+ +
Sbjct: 327 RLINDILDFSKIEAGKLSLEEVNFNLHQLIHDISDLFVEQMVASQTELVIDIRPGVPQRI 386
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV-ETELS-SSKNTLSGYP 604
IGDP R RQ++ N+ N+ KFT KG I +TV D I +TE+ + K+T G P
Sbjct: 387 IGDPLRLRQVLVNITANAFKFTSKGEIIITVS-----ADQINATKTEIVFAIKDTGIGIP 441
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
+ H ++ FK DGST
Sbjct: 442 EEVQPHLFEAFK--QADGST---------------------------------------- 459
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTS--NEHNS 722
+R +GGTG+GLSISK +V M G I F S P GSTF FT TS
Sbjct: 460 ---TRKYGGTGLGLSISKRIVNLMGGNIWFRSRPEDGSTFFFTITPNVAVETSLIEFEIP 516
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPR-PIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
Q++ N+P LVVD +R+ + RY +++ G Q + +AS
Sbjct: 517 QELKNKP-----------VLVVDDNFAVRSVLVRY-LKQFGFQP----------TSVASA 554
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVN-------------NLRKLGCGFQSKLFLLANSIS 828
+ I +I KD L ++ +RK + + ++ +
Sbjct: 555 EEAIKII-----EDRKDDQFKLLIIDLKLPGMNGDEASIEIRKTYSKEELPILMITATEL 609
Query: 829 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK 888
+S A + I +I KPL+ + L S+ G ++E PS ++ +
Sbjct: 610 NS-ALSKAQNAQINRMISKPLKQATLFNSIMETFGYDVPKEY-SYE-PSKPIKDEFKSFR 666
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+L+V+DN +N +VA L+ G + G +A ++ +D MDIQMPEMDGYE
Sbjct: 667 LLLVEDNPINQQVAEQILEPTGIEISSAPNGAEAVRMVQEAG-YDIVLMDIQMPEMDGYE 725
>gi|414176745|ref|ZP_11430974.1| PAS domain S-box protein [Afipia broomeae ATCC 49717]
gi|410886898|gb|EKS34710.1| PAS domain S-box protein [Afipia broomeae ATCC 49717]
Length = 751
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 164/545 (30%), Positives = 259/545 (47%), Gaps = 91/545 (16%)
Query: 418 EDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRT 477
E + E + A +A+ AKS+FLA SHEIRTP+NG++GM ++L+DTEL Q Y +
Sbjct: 213 ETERALAEARDLANSANRAKSKFLAMASHEIRTPLNGIIGMSNLLLDTELTPEQATYAKA 272
Query: 478 AQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVY 537
+ SG AL++LI+E+LD +K+E+GK++LE F L A+++++ L + ++Q + +E+A Y
Sbjct: 273 VKTSGDALMALIDELLDFSKIEAGKIDLEYRPFTLAAMIEEITELLAPRAQARKLEIASY 332
Query: 538 ISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSK 597
+ +R+P +IGD R RQ++ NL GN+IKFT G + +VE +
Sbjct: 333 VDERLPAEVIGDAARLRQVLLNLAGNAIKFTSVGGV---ALIVEPGI------------- 376
Query: 598 NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 657
W G +F V DTG GI EAQ RIF
Sbjct: 377 --------------WPGEVSF---------------------LVRDTGIGIAPEAQQRIF 401
Query: 658 TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT---AVFGNGS 714
F Q I+R +GGTG+GLSIS+ +V RM G I S G+TF F+ AV G
Sbjct: 402 REFEQASEGIARNYGGTGLGLSISERIVRRMGGRITLESAEGAGATFAFSIPLAVAEPGH 461
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 774
S+++ ++ + G ++V P+ I A + + R G Q V+D
Sbjct: 462 SSASPF-----------LAPDLTGKSVMLVAPQTIEASLIARRLGRWGAQTCTVAD---- 506
Query: 775 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRAN 833
+ I +L E+ W + T L+ +A S+R +
Sbjct: 507 -------ADIARALLPERS-WYAVLADCTGSDTRLQDFAAAASHHATHRIAMFTPSARRD 558
Query: 834 TSTDGVSI-PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR----- 887
T +++ ++KPLR++ LAA L A G + P++ ++ +
Sbjct: 559 IPTGIMALFTGYLVKPLRATSLAARLS-ASGAALVPELPGDNEPAIEPSSIVSPQTVAPR 617
Query: 888 --KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH----QFDACFMDIQM 941
IL+ +DN +N + + L R G V G++A E + +D MDIQM
Sbjct: 618 ALSILVAEDNEINALLIRSLLTRMGHRAVITTDGEQALESWIAADGAGTPYDVVLMDIQM 677
Query: 942 PEMDG 946
P++DG
Sbjct: 678 PKLDG 682
>gi|153803093|ref|ZP_01957679.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
gi|229521281|ref|ZP_04410701.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80]
gi|124121375|gb|EAY40118.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
gi|229341813|gb|EEO06815.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80]
Length = 927
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 177/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V V +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAVPE 569
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLTNTSLPKPQADKLPLC- 666
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 723
>gi|424660948|ref|ZP_18098195.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE-16]
gi|408049820|gb|EKG85009.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE-16]
Length = 921
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 177/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 203 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 262
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 263 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 322
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 323 LQTIEKSANNLLAIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 382
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 383 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 427
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 428 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 454
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 455 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 514
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V V +
Sbjct: 515 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAVPE 563
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 564 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 615
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 616 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLTNTSLPKPQADKLPLC- 660
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 661 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 717
>gi|417825671|ref|ZP_12472259.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE48]
gi|340047156|gb|EGR08086.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE48]
Length = 927
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 177/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V V +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAVPE 569
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLTNTSLPKPQADKLPLC- 666
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 723
>gi|334133034|ref|ZP_08506789.1| Putative sensor protein gacS [Methyloversatilis universalis FAM5]
gi|333441944|gb|EGK69916.1| Putative sensor protein gacS [Methyloversatilis universalis FAM5]
Length = 916
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 168/538 (31%), Positives = 254/538 (47%), Gaps = 79/538 (14%)
Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
++VE + E K++AE+A+ AKS+FLA +SHEIRTPMNGV+GM +L T LD Q+
Sbjct: 256 SEVEARTRELREAKEQAESANQAKSRFLANMSHEIRTPMNGVIGMAGLLERTPLDERQRR 315
Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
Y+ S ++L+ +IN+VLD +K+E+GKL+ E V F + + +DV+ LF+ ++ KG+E
Sbjct: 316 YLDAISGSAESLLRVINDVLDFSKIEAGKLQFERVVFEPQQVFEDVVLLFADPARSKGIE 375
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
L++ I+ +P L+GDP R RQ++ NL+ N++KFT G + V V V
Sbjct: 376 LSLRIAPSLPHGLVGDPHRLRQVLINLVSNALKFTAAGEVLVDVQAV------------- 422
Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
+ G P W L +V DTG GI +A
Sbjct: 423 -----AVDGAP----AQVW------------------------LEAAVVDTGSGISADAA 449
Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
+R+F F Q S +R GGTG+GL+I++ L+ G + F S+P GS F F+ F
Sbjct: 450 ARVFDAFAQADSSTTRRFGGTGLGLAITRELITAQGGTLDFSSVPGYGSHFHFSLPFDRA 509
Query: 714 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSD 770
+ + P + Q +ALVVDP A+ + GI+ E ++
Sbjct: 510 GTVA-----------PGLQAGGTQ--RALVVDPSLRSAQNLLTLLTDGGIECLHCETAAE 556
Query: 771 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
+ L + + +L Q++ + V R L F S L+ S
Sbjct: 557 AMMALMRGELCGLPFDTVLCAQQLADAGA------VELARMLAERFGSPPRLICMQGS-- 608
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
A+ +S+P VI KP+ LA L A G + E P+ K+L
Sbjct: 609 -ADPDLARISLP-VIRKPVLRGELALLLGDARRPGPASALTRIEAPAKP------SIKVL 660
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+V+D+ VN ++A L G V E G A + FD MD QMP MDG+E
Sbjct: 661 LVEDHPVNREIALDMLTELGCRVHAAENGLIALGAVS-REPFDLVLMDCQMPVMDGFE 717
>gi|392557140|ref|ZP_10304277.1| sensor protein [Pseudoalteromonas undina NCIMB 2128]
Length = 1112
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 164/561 (29%), Positives = 267/561 (47%), Gaps = 86/561 (15%)
Query: 395 ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 454
++ I +L+G ++ + ++E + +M K+ AE A +AKS+FLA++SHEIRTPMNG
Sbjct: 568 LIAIGALIGSLYSSE----QRIETEAELVMA-KEAAEQAVIAKSEFLASMSHEIRTPMNG 622
Query: 455 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514
VLGML+++ T LD Q+ +++ AQ+S ++L+ +IN++LD +K+E+GKL++E++ FNL
Sbjct: 623 VLGMLNIIQATSLDQQQRHHIKLAQSSAESLLGIINDILDFSKIEAGKLDIESIQFNLPQ 682
Query: 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 574
+L +++ F+ K++ +L + + ++ DP R RQI+ NL+ N++KFT+ G +
Sbjct: 683 LLGEIVESFALKAESNNTQLILDTTHVSTSEIVCDPNRLRQILNNLIANAVKFTQNGQVL 742
Query: 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 634
VT +E+ +D+ +E
Sbjct: 743 VTA-TIEKTLDNTTLE-------------------------------------------- 757
Query: 635 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 694
++ DTG GI E Q ++F F Q S +R +GGTG+GL+I K L M GE+
Sbjct: 758 ----CAIIDTGIGISFEKQKQLFDSFTQADASTTRQYGGTGLGLAIVKQLCELMGGEVSV 813
Query: 695 VSIPNIGSTFTF----TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIR 750
S+PN GSTFTF T+V +H Q + L+VD +
Sbjct: 814 YSLPNEGSTFTFSVNITSVIDQAFDLDCQH---------------IQAKRILIVDNSEMN 858
Query: 751 AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNL- 809
A + + G V V D + + I + + +V DTS + L
Sbjct: 859 ATIIEKQLTLWGADVSAVCDYKEVETYITNNQQ------TPPDVAIIDTSFLEPVAHPLA 912
Query: 810 RKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGN 869
KL + L+ +S S++N G + ++I KPL + L +L + V
Sbjct: 913 EKLKHFLVNSHILIMAPMSYSKSNLFY-GNNEAALIFKPLTAIGLYDTLVK---VTLAAQ 968
Query: 870 IRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--M 927
+ LP +L+V+DN VN VA A LK+ E G+ A L
Sbjct: 969 PKELALPPAINTPKKAKGHVLLVEDNKVNQVVACALLKQAELTFDIAEDGEDALTKLNQA 1028
Query: 928 PPHQFDACFMDIQMPEMDGYE 948
+ + MD QMP MDGY+
Sbjct: 1029 NANTYQLILMDCQMPIMDGYQ 1049
>gi|386827592|ref|ZP_10114699.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
gi|386428476|gb|EIJ42304.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
Length = 762
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 165/543 (30%), Positives = 258/543 (47%), Gaps = 82/543 (15%)
Query: 411 NRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT 470
+ +AK+++ + K+ AE+A AKSQFLAT+SHEIRTPMNGVLGM ++L+DT L+
Sbjct: 227 DMLAKIQKRDKELEHAKELAESASQAKSQFLATMSHEIRTPMNGVLGMTELLLDTGLNER 286
Query: 471 QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDK 530
Q+ T Q SG+ L+++IN+VLD +K+E+G L L F++ A+++D L LF+G K
Sbjct: 287 QRHLAETVQNSGQTLMTIINDVLDFSKIEAGHLALYNSEFDVHALVEDTLDLFAGAIVQK 346
Query: 531 GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 590
+ L +I+ VP+ L GD R RQI++NL+ N+IKFTE G + + V V
Sbjct: 347 KLALCSHIAANVPKMLSGDLVRLRQILSNLINNAIKFTEVGEVVIKVTQV---------- 396
Query: 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPL 650
N D + + L ++ DTG GIP
Sbjct: 397 ----------------------------NNDATR----------VQLKFAIYDTGIGIPE 418
Query: 651 EAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710
+F PF QV S+SR +GGTG+GL+ISK L M GEIG S N GS F FTA
Sbjct: 419 AKCPILFQPFTQVDGSMSRRYGGTGLGLAISKQLAQLMGGEIGVESKINQGSLFWFTAWL 478
Query: 711 GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 770
+ + + + ++ L+V + ++ ++ G+ V+ +
Sbjct: 479 DKLQTPT-----------VSPAQDKLPALQVLIVAYKNHCVQILAEYLTTWGLHVDFCDE 527
Query: 771 QLQCLSQIASG---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
Q L+Q+ + +++L+E K S++ + + +S +L S+
Sbjct: 528 QSAVLAQVQTAITQHTPYDVVLLELMHNPKQDSIAL-----AQAIKEQQESTHIILIASV 582
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL---- 883
R + +I +++ KP+R + L L N+ N P
Sbjct: 583 DQVR-KSYLQHPAISAILHKPIRQARLYQCL---------CNVINNPFPQTEAEQTDSTE 632
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
KIL+ +DN VN + L+ G V VE G++ + L +D FMD QMP
Sbjct: 633 RFNAKILLAEDNIVNQQYVRLVLEDLGCQVDLVEDGEQVLKQLR-LQAYDLIFMDCQMPH 691
Query: 944 MDG 946
+DG
Sbjct: 692 LDG 694
>gi|343493983|ref|ZP_08732267.1| hybrid sensory histidine kinase BarA [Vibrio nigripulchritudo ATCC
27043]
gi|342825624|gb|EGU60101.1| hybrid sensory histidine kinase BarA [Vibrio nigripulchritudo ATCC
27043]
Length = 931
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 183/600 (30%), Positives = 282/600 (47%), Gaps = 99/600 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L A+ I + ++ H I QAT + +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDALKNGINAMAMSLSEYHVEMQHSIDQATSDLRETLE 268
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T L +QQDY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTRLSSSQQDY 328
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+S+IN++LD +K+E+GKL LE + F+ + L++V SL + + +KG+EL
Sbjct: 329 LQTIERSANNLLSIINDILDFSKLEAGKLALENIPFDFQECLEEVASLQATSAHEKGLEL 388
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I ++V L + D IE++
Sbjct: 389 TLKIDPKIPAGVVGDPLRIQQVLTNLVGNSIKFTERGNIDISVELRTQKEDFIELQ---- 444
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
V DTG GI Q+
Sbjct: 445 --------------------------------------------FMVRDTGIGISERQQA 460
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LVG+M GE+ S + GSTF FT
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVGQMGGEVSLTSRLHQGSTFWFTLRLATSD 520
Query: 715 -STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+++ ++ Q+N G K L+++P A V + + G+ V S+ +
Sbjct: 521 MPVASDVDTHQLN-----------GKKILLIEPNMQAASVIQQQLINEGLLVTYRSNMPE 569
Query: 774 -------CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 826
L + + ++ VEQ W S + NN + G S L+
Sbjct: 570 HIEPHEFVLLNLPPNQR-FDITSVEQ--W---ISRAKEIANN---IVLGLPSTELALSEQ 620
Query: 827 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG 886
+ S I KPL L SL + + +L S S L
Sbjct: 621 LVSEHQ---------VQCITKPLSRRKLLQSLTQCHITEDAALPLIDQLDSES----KLP 667
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K++ VDDN NLK+ +A L+ VV G++A FD MDIQMP+MDG
Sbjct: 668 LKVMAVDDNPANLKLISALLQERVEQVVTCSNGEQAVAAAQ-QQAFDMILMDIQMPKMDG 726
>gi|419830886|ref|ZP_14354371.1| his Kinase A domain protein [Vibrio cholerae HC-1A2]
gi|419834571|ref|ZP_14358025.1| his Kinase A domain protein [Vibrio cholerae HC-61A2]
gi|422308386|ref|ZP_16395536.1| his Kinase A domain protein [Vibrio cholerae CP1035(8)]
gi|422918285|ref|ZP_16952599.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-02A1]
gi|423823183|ref|ZP_17717191.1| his Kinase A domain protein [Vibrio cholerae HC-55C2]
gi|423857145|ref|ZP_17720994.1| his Kinase A domain protein [Vibrio cholerae HC-59A1]
gi|423884420|ref|ZP_17724587.1| his Kinase A domain protein [Vibrio cholerae HC-60A1]
gi|423998707|ref|ZP_17741957.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-02C1]
gi|424017608|ref|ZP_17757434.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-55B2]
gi|424020525|ref|ZP_17760306.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-59B1]
gi|424625906|ref|ZP_18064365.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-50A1]
gi|424630390|ref|ZP_18068672.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-51A1]
gi|424634437|ref|ZP_18072535.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-52A1]
gi|424637516|ref|ZP_18075522.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-55A1]
gi|424641420|ref|ZP_18079300.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-56A1]
gi|424649492|ref|ZP_18087152.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-57A1]
gi|443528411|ref|ZP_21094447.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-78A1]
gi|341635330|gb|EGS60048.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-02A1]
gi|408011083|gb|EKG48919.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-50A1]
gi|408017207|gb|EKG54725.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-52A1]
gi|408022026|gb|EKG59255.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-56A1]
gi|408022461|gb|EKG59670.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-55A1]
gi|408031262|gb|EKG67898.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-57A1]
gi|408053462|gb|EKG88476.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-51A1]
gi|408617656|gb|EKK90769.1| his Kinase A domain protein [Vibrio cholerae CP1035(8)]
gi|408620659|gb|EKK93671.1| his Kinase A domain protein [Vibrio cholerae HC-1A2]
gi|408634291|gb|EKL06554.1| his Kinase A domain protein [Vibrio cholerae HC-55C2]
gi|408639749|gb|EKL11556.1| his Kinase A domain protein [Vibrio cholerae HC-59A1]
gi|408640070|gb|EKL11871.1| his Kinase A domain protein [Vibrio cholerae HC-60A1]
gi|408648704|gb|EKL20039.1| his Kinase A domain protein [Vibrio cholerae HC-61A2]
gi|408852149|gb|EKL91993.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-02C1]
gi|408858708|gb|EKL98380.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-55B2]
gi|408866723|gb|EKM06100.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-59B1]
gi|443453230|gb|ELT17061.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-78A1]
Length = 916
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 177/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 198 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 257
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 258 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 317
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 318 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 377
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 378 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 422
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 423 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 449
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 509
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V V +
Sbjct: 510 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAVPE 558
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 559 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 610
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 611 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLTNTSLPKPQADKLPLC- 655
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 656 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 712
>gi|2463029|emb|CAA74020.1| sensory kinase [Pectobacterium carotovorum subsp. carotovorum]
gi|385873230|gb|AFI91750.1| Signal transduction histidine-protein kinase BarA [Pectobacterium
sp. SCC3193]
Length = 928
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 169/536 (31%), Positives = 256/536 (47%), Gaps = 100/536 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T L+ TQ DY+ T + S L+
Sbjct: 280 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLNTTQTDYLLTIERSANNLL 339
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE + F+L + LDDV+ L + + +KG+EL + I + VPE
Sbjct: 340 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQY 399
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R +QIITNL+GN+IKFTE+G+I + V + +++E
Sbjct: 400 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLE---------------- 443
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
V + DTG GI QS++F F Q S
Sbjct: 444 --------------------------------VQICDTGIGIAELQQSQLFQAFRQADTS 471
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S N GSTF F H + +N
Sbjct: 472 ISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWF-------------HITLPLN 518
Query: 727 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
P++V E QG V+ PI A+ + + + + V Q+ G
Sbjct: 519 --PHTVPIEPVYTMLQGKHLAYVEYHPIAAQATLDILSQTPLMVSYSP----TFEQLPEG 572
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
+++L+ ++T + + LR + C + L S++ A +
Sbjct: 573 E--FDILLLAIPAQYRNTLLD--YTPRLRDI-CRRAPCVILALPSLAQMDAE-QLKAFGV 626
Query: 842 PSVIMKPLRSSMLAASLQRAM----------GVGNKGNIRNWELPSMSLRHLLLGRKILI 891
+ + KPL +S L LQ + ++G +R+ P+ L ++
Sbjct: 627 HACLSKPLAASRLLPLLQNSTLFQLSFLPSDTTSHQGTVRH---PAR------LPLSVMA 677
Query: 892 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFMDIQMPEMDG 946
VDDN NLK+ L+ ++ E G +A + M HQ D MDIQMP MDG
Sbjct: 678 VDDNPANLKLIGTLLEEQVDTIILCESGTEAIAQAKM--HQIDIILMDIQMPGMDG 731
>gi|85712454|ref|ZP_01043503.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
[Idiomarina baltica OS145]
gi|85693732|gb|EAQ31681.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
[Idiomarina baltica OS145]
Length = 868
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 147/524 (28%), Positives = 251/524 (47%), Gaps = 62/524 (11%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
M + K+ AE A+VAK +FLA +SHEIRTP+N ++GM ++ + T+L Q+ Y++ +S
Sbjct: 194 MEQAKESAEQANVAKGEFLANMSHEIRTPINAIVGMANLCLKTQLSEKQKRYIKVIDSSS 253
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
+AL+ +IN++LD +K+++GKL +E + F+L+ +L + +F+ K+ DK +E + + +
Sbjct: 254 QALLGVINDILDFSKIDAGKLSIERIPFDLQDVLTSLADMFAYKAYDKDLEFIINLPANI 313
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P L GDP R Q++ NL+ N+IKFTE G I V V L+++ D +
Sbjct: 314 PTRLFGDPLRLNQVLVNLVSNAIKFTEDGEINVAVTLLDKNTDKV--------------- 358
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
W L +SV DTG G+ E ++ +F F Q
Sbjct: 359 ---------W------------------------LRISVTDTGIGMDEEQRANLFKAFTQ 385
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
S +R +GGTG+GL+IS+ L+ M G+IG S GSTF + H+
Sbjct: 386 ADSSTTRKYGGTGLGLAISRRLIQLMGGDIGVTSGVGQGSTFYIELTLPMQPEQDDSHH- 444
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
+ + +G + L +D ++ + ++ + V V Q L +
Sbjct: 445 -------QYLIQKLRGKRVLAIDDNLSTREMIQEMLRSYQVDVRVCRTAEQALDILREDL 497
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
+ +++LV+ W + + L + ++ +LA + + I
Sbjct: 498 EPYDVLLVD---W-RLPGMDGLSLCQRVYQSLASEAPKMILATGYYAEEMSEQAAAAGIS 553
Query: 843 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 902
++ KP ++ L SL + +I + + P+ +L + G IL+V+DN +N +VA
Sbjct: 554 DILSKPFTATTLGHSLATTL-YKRDDSISSKDAPATNLPDAIQGAPILLVEDNEINQQVA 612
Query: 903 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
LK G V E G+ A + + Q+ MDIQMP MDG
Sbjct: 613 LELLKSQGFKVDIAEHGQAALDAI-EQKQYALVLMDIQMPVMDG 655
>gi|386815513|ref|ZP_10102731.1| multi-sensor hybrid histidine kinase [Thiothrix nivea DSM 5205]
gi|386420089|gb|EIJ33924.1| multi-sensor hybrid histidine kinase [Thiothrix nivea DSM 5205]
Length = 943
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 168/578 (29%), Positives = 285/578 (49%), Gaps = 94/578 (16%)
Query: 405 IFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 464
+F + I+ E + + + A + KS+FLA +SHEIRTPMNGV+GM ++L+
Sbjct: 391 VFTGIIRDISHRIEAQQELAKARDAALESARLKSEFLANMSHEIRTPMNGVIGMTELLLG 450
Query: 465 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 524
+L+ Q+D VRT Q S ++L+S+IN++LD +K+E+GKL + F L I++ V+ L
Sbjct: 451 GKLNREQRDQVRTVQHSAESLLSIINDILDFSKIEAGKLSISNTQFELLPIIESVMDLLM 510
Query: 525 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 584
+Q KG+ELA +I VP+ ++ DP R RQI+ NL+ N+IKFTE+G++ + +
Sbjct: 511 EDAQTKGIELAFFIDHNVPKAMVSDPVRMRQILLNLLSNAIKFTERGYVILK-------I 563
Query: 585 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644
++++E C + L V DT
Sbjct: 564 STLDLE------------------CR-------------------PPGEAQQLRFEVLDT 586
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GIP EAQ+++F F QV S++R +GGTG+GL+ISK L M G IG +S +GS+F
Sbjct: 587 GCGIPEEAQAKLFRAFSQVDGSVTRQYGGTGLGLAISKQLAQLMGGGIGLLSKVGVGSSF 646
Query: 705 TFT---AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL 761
T V G + H P SV L++ +P+ ++
Sbjct: 647 WVTITVEVSAVGERPAVAH--------PLSV---------LLLGSKPLMNTYYEAQMREW 689
Query: 762 GIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW----EKDTSVSTLFVNNLRKLGCGFQ 817
G++ V L ++ + ++I+++ +++ E V TL ++++R+ Q
Sbjct: 690 GMEPVTVDSLNSLLVRLEENNHAYDVIVLDADMFYHKPEHPLGVRTL-IHSVREHS---Q 745
Query: 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL-P 876
S L + +S ++ S ++ KP++ S++ L R I+ + P
Sbjct: 746 SPLIIYGSSRQIAQLEISQQLGRQVHLLPKPIKHSLVLRYLSRF-------QIQPAPVEP 798
Query: 877 SMSLRHLLL----GRKILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMPPHQ 931
M + ++IL+ +D++VN KVA A LK+ G + C G++A + + +
Sbjct: 799 IMQTDGATILAVNKKRILLTEDHSVNQKVALAMLKKLGHTHIDCALNGEEALQAVQ-QNA 857
Query: 932 FDACFMDIQMPEMDGYEML--------PCFESFLLIAI 961
+D MD QMP+MDGYE P +++ +IA+
Sbjct: 858 YDLVLMDCQMPKMDGYEATRQIRQLPAPLYQALPIIAL 895
>gi|386827600|ref|ZP_10114707.1| PAS domain S-box [Beggiatoa alba B18LD]
gi|386428484|gb|EIJ42312.1| PAS domain S-box [Beggiatoa alba B18LD]
Length = 1359
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 173/584 (29%), Positives = 272/584 (46%), Gaps = 111/584 (19%)
Query: 406 FQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT 465
+QA I + ++ ++ K+ AEAA AKS+FLA +SHEIRTPMNGV+GM ++L++T
Sbjct: 480 YQAVGRDITERKQTEEALLRAKETAEAATRAKSEFLANMSHEIRTPMNGVMGMTELLLNT 539
Query: 466 ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 525
L V Q++Y + S AL +L+N++LD +K+E+GKL LE + F+L +V L S
Sbjct: 540 TLTVQQREYASIIRNSTNALQTLLNDILDFSKIEAGKLTLEPIPFDLETATLEVARLLSI 599
Query: 526 KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 585
+ KG +L V S P +IGD GR RQI+TNL GN++KFT++G++FV V E
Sbjct: 600 TASSKGFDLIVRYSPTAPRYVIGDAGRMRQILTNLTGNAVKFTQRGYVFVNVDCAERT-- 657
Query: 586 SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 645
G + + ++DTG
Sbjct: 658 ------------------------------------GEEAVIR----------FQIQDTG 671
Query: 646 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 705
GI ++ IF F Q S +R GGTG+GL+I+K LV M G+I +S GS FT
Sbjct: 672 VGIAVDKLEAIFDKFTQADTSTTRKFGGTGLGLAITKQLVTLMNGKINVISDVGKGSMFT 731
Query: 706 FTAVFGNGSSTSNEHNSQQMNNQPN-SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 764
+ F N+ +M +P ++ + + LVVD + +V + ++ I+
Sbjct: 732 VSIPF------PLVKNAVEMPTRPQIALPNTLINTRVLVVDDNIVNQQVLQEQLESFSIR 785
Query: 765 VEVVSDQLQCLSQIASGSK--------IINMIL------VEQEVWEKDTSVSTLFVNNLR 810
+V +D L ++A I++ I+ V E KD + + L
Sbjct: 786 CDVCNDAETALQRLAESYAAQDPYWLLILDYIMDGMNGEVLGETIRKDQKYNNTLLILLS 845
Query: 811 KLGCGFQSKL--------FLLA---------------NSISSSRANTSTDGVSIPSVIMK 847
GC + +++ +LL + + A T ++P+++
Sbjct: 846 STGCQYDAQILQNKGFSAYLLKPLPVRHLRQTIIALWSDYQNKFAQTFIKIDTVPNILPN 905
Query: 848 PLRSSMLAASLQRAMGVGN-KGNIR-NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905
L +A+ GN + N + N P LG ++L+++DN+VN VA
Sbjct: 906 KLND--------KAINGGNSEANTQINLRAP--------LGTRVLLIEDNDVNRLVAMNM 949
Query: 906 LKRYGAAVVCVERGKKATE-LLMPPHQFDACFMDIQMPEMDGYE 948
L+ G V GK A E +L +Q+D MD+QMPEMDG E
Sbjct: 950 LQELGCQVTEAINGKMAVEKILDNDYQYDFVLMDVQMPEMDGIE 993
Score = 54.3 bits (129), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 95/218 (43%), Gaps = 20/218 (9%)
Query: 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEK 797
G + L+++ + V+ +Q LG QV + + +I + +L++ ++ E
Sbjct: 930 GTRVLLIEDNDVNRLVAMNMLQELGCQVTEAINGKMAVEKILDNDYQYDFVLMDVQMPEM 989
Query: 798 DTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD-GVSIPSVIMKPLRSSMLAA 856
D +T + L + L ++A + + + + + + KP+ L A
Sbjct: 990 DGIEATRLIRELENIN----QHLIIIAMTAGAMKGDADRCLKAGMDDYLAKPITLERLTA 1045
Query: 857 SLQRAMGVGNKGNIR------NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYG 910
+ + + + + + N LP+ +K+L+V+DN VN VA L++ G
Sbjct: 1046 VIGKYIALEQPNSEKLTTKEGNMMLPNQ--------QKVLLVEDNEVNSLVAITMLEQLG 1097
Query: 911 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
V V GK+A + Q+D MDI+MP MDG E
Sbjct: 1098 YQVESVVNGKEAVAICQEK-QYDIILMDIRMPVMDGVE 1134
>gi|338533502|ref|YP_004666836.1| sensory box histidine kinase/response regulator [Myxococcus fulvus
HW-1]
gi|337259598|gb|AEI65758.1| sensory box histidine kinase/response regulator [Myxococcus fulvus
HW-1]
Length = 929
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 163/531 (30%), Positives = 254/531 (47%), Gaps = 88/531 (16%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
AKS FLAT+SHEIRTPMN ++GM +L+D L Q+D+V T + S +AL++L+N+VLD
Sbjct: 254 AKSLFLATMSHEIRTPMNAIIGMTGLLLDRTLTEEQRDFVATIRQSSEALLTLLNDVLDF 313
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+E+G+ E E F+LR ++ VL L + ++ +KG++L ++ +P+ L+GD R RQ
Sbjct: 314 SKIEAGRFEAELRPFDLRQCVESVLDLMAVRASEKGLDLGCDMAPELPQMLVGDASRLRQ 373
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
++ NL+GN++KFTE G V+V G P+A
Sbjct: 374 VLLNLVGNALKFTEHGGAVVSV-----------------------EGTPLAG-------- 402
Query: 616 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
AD L SV+DTG GIP + ++ +F PF Q+ S+SR GGTG
Sbjct: 403 ------------AEGEADWA-LTFSVQDTGPGIPEDRRAGLFQPFNQLDASVSRRFGGTG 449
Query: 676 IGLSISKYLVGRMKGEIGFVS--IPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVS 733
+GL+I K LV M G I S +P G+TF FT + Q QP
Sbjct: 450 LGLAICKRLVEAMGGTIWVESEGVPGRGTTFRFT--------LRAQAAPQAYAVQPRQEQ 501
Query: 734 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQE 793
+ QG + L+VD + ++ +Q G+Q + ++ L+Q+ +G++ +L++
Sbjct: 502 ALLQGRRVLIVDDNALFRRLLGRQLQAWGLQPAEAASGMEALAQLQAGAR-FEAVLIDHH 560
Query: 794 VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 853
+ D + + + L L+ S R N +G+ V+ +PL+ S
Sbjct: 561 MPGLDGTALAERIREREE-----TRTLPLVLVSTPGRRGN-PPEGL-FAGVLSRPLKDSQ 613
Query: 854 L----------------AASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
L AA R G R + + IL+V+DN
Sbjct: 614 LYDALMSCFSQHIPQLTAARQARPSRAGPFPGERPGDTVPLD---------ILLVEDNAT 664
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
N K+A L+R G G++A + L ++D MD+QMPEMDG E
Sbjct: 665 NQKLALLVLERLGYRADVALNGRQALQALN-QKRYDVVLMDLQMPEMDGLE 714
>gi|15642449|ref|NP_232082.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|153819819|ref|ZP_01972486.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
8457]
gi|153823739|ref|ZP_01976406.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
gi|227082574|ref|YP_002811125.1| hybrid sensory histidine kinase BarA [Vibrio cholerae M66-2]
gi|229507487|ref|ZP_04396992.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286]
gi|229512318|ref|ZP_04401797.1| BarA sensory histidine kinase [Vibrio cholerae B33]
gi|229519454|ref|ZP_04408897.1| BarA sensory histidine kinase [Vibrio cholerae RC9]
gi|229606992|ref|YP_002877640.1| hybrid sensory histidine kinase BarA [Vibrio cholerae MJ-1236]
gi|254849577|ref|ZP_05238927.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
gi|298500190|ref|ZP_07009995.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
757]
gi|360036328|ref|YP_004938091.1| two-component system, NarL family, sensor histidine kinase BarA
[Vibrio cholerae O1 str. 2010EL-1786]
gi|418335452|ref|ZP_12944361.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-06A1]
gi|418350744|ref|ZP_12955475.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-43A1]
gi|424599923|ref|ZP_18039101.1| signal transduction histidine-protein kinase BarA [Vibrio Cholerae
CP1044(17)]
gi|424657564|ref|ZP_18094848.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-81A2]
gi|449055106|ref|ZP_21733774.1| BarA sensory histidine kinase [Vibrio cholerae O1 str. Inaba G4222]
gi|9657030|gb|AAF95595.1| sensor histidine kinase/response regulator [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|126509638|gb|EAZ72232.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
8457]
gi|126518744|gb|EAZ75967.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
gi|227010462|gb|ACP06674.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2]
gi|229344143|gb|EEO09118.1| BarA sensory histidine kinase [Vibrio cholerae RC9]
gi|229352283|gb|EEO17224.1| BarA sensory histidine kinase [Vibrio cholerae B33]
gi|229354992|gb|EEO19913.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286]
gi|229369647|gb|ACQ60070.1| BarA sensory histidine kinase [Vibrio cholerae MJ-1236]
gi|254845282|gb|EET23696.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
gi|297540883|gb|EFH76937.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
757]
gi|356416487|gb|EHH70118.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-06A1]
gi|356445240|gb|EHH98049.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-43A1]
gi|356647482|gb|AET27537.1| two-component system, NarL family, sensor histidine kinase BarA
[Vibrio cholerae O1 str. 2010EL-1786]
gi|408040649|gb|EKG76820.1| signal transduction histidine-protein kinase BarA [Vibrio Cholerae
CP1044(17)]
gi|408051886|gb|EKG86959.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-81A2]
gi|448265148|gb|EMB02383.1| BarA sensory histidine kinase [Vibrio cholerae O1 str. Inaba G4222]
Length = 927
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 176/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 666
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 723
>gi|348029065|ref|YP_004871751.1| PAS domain-containing protein [Glaciecola nitratireducens FR1064]
gi|347946408|gb|AEP29758.1| PAS domain-containing protein [Glaciecola nitratireducens FR1064]
Length = 1045
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 167/544 (30%), Positives = 267/544 (49%), Gaps = 86/544 (15%)
Query: 420 YHG-MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 478
Y G M+ K A+ A AKS+FLA +SHEIRTPMNGVLGM+D+L+DT L Q ++ A
Sbjct: 299 YEGAMLNATKAAQEASNAKSEFLARMSHEIRTPMNGVLGMIDLLLDTRLTSDQTHKLKVA 358
Query: 479 QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 538
+ S +L+++IN++LD ++VE+G++E+E++ FNL +++V + +S KG+EL V +
Sbjct: 359 KNSASSLLTIINDILDFSRVEAGRMEIESLDFNLPQQIENVAQTLAIRSDAKGIELIVDV 418
Query: 539 SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 598
SD + ++GD R RQ++TNL+ N+IKFTE G I V
Sbjct: 419 SDIQQKMVVGDAVRLRQVLTNLISNAIKFTEVGQIVVRA--------------------- 457
Query: 599 TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 658
KT NQ D L SVEDTG GIP +F
Sbjct: 458 -----------------KTINQ-----------GDTTRLECSVEDTGIGIPDSKLEHLFE 489
Query: 659 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 718
FMQV S +R +GG+G+GL+I + L+ M G I S N G+ F+F
Sbjct: 490 SFMQVDTSTTRVYGGSGLGLAICERLIELMGGRIQVSSSINKGTIFSFDINL-------- 541
Query: 719 EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+ + ++P + S + LVVD ++ ++ G++ + D L ++
Sbjct: 542 --KTSLLEDKPQA-RSNIVDWQILVVDDNETNREILASQLENWGVKPILAIDAFDALDKL 598
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
S +++I+ + + KD V +++ + K+ +L+ S+S +
Sbjct: 599 NSAPLELDLIITDMNMPNKD---GLSLVADIKMIDRYKDIKILMLS-SMSFQMSVAEFGS 654
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNK----GNIR----NWELPSM---SLRHLLLGR 887
+ + S +MKP+ SS L ++ A+ G++ NI+ N +LP + H
Sbjct: 655 LGLDSCLMKPVGSSELFNTI--ALMSGDESTASNNIKAVNANNQLPEIVKWPSYH----- 707
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP---HQFDACFMDIQMPEM 944
K+LIV+DN+VN VA LK++G G A + L+ + MD QMP +
Sbjct: 708 KVLIVEDNSVNQLVAEGLLKKFGLQYGVAIDGSIAIQTLIQSELDQPYTLILMDCQMPVL 767
Query: 945 DGYE 948
DGY+
Sbjct: 768 DGYK 771
>gi|392553060|ref|ZP_10300197.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
spongiae UST010723-006]
Length = 1422
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 165/547 (30%), Positives = 262/547 (47%), Gaps = 88/547 (16%)
Query: 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
+ + K AEAA VAK +FLA++SHEIRTPMNGV+GML+++ D+ L+ Q + A+ S
Sbjct: 880 ALTKAKVNAEAAMVAKDEFLASMSHEIRTPMNGVIGMLELMQDSPLNDEQTHRLTIAKNS 939
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
+L++LIN++LD +K+E+ KLELE + F+L +L +++ LF+ +++ K +EL + +
Sbjct: 940 ANSLLNLINDILDFSKIEADKLELEQIQFDLHLLLSELVELFATRAEQKQLELILDTVNL 999
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+IGDPGR RQI++NL+GN+IKFT +G I V+ L +
Sbjct: 1000 NEHFVIGDPGRIRQILSNLIGNAIKFTHQGEIIVSAALCD-------------------- 1039
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
D H W+ L ++V+DTG GI E +F F
Sbjct: 1040 -----DSEHYWR-----------------------LTLAVKDTGIGISKEKHQHVFELFS 1071
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF--GNGSSTSNE 719
Q S +R +GGTG+GL+I K L M G+I S N GS F N SS S
Sbjct: 1072 QEDSSTTRNYGGTGLGLAIVKRLCNHMDGDISLTSATNEGSEFVCNLRIKKANQSSLS-- 1129
Query: 720 HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQ-- 777
QPN S G+ LVVD ++ ++ G +V S+ + L++
Sbjct: 1130 --------QPNVAIS---GLNILVVDDNETNCEILAKQLKNWGAKVTTFSNGQEALARCN 1178
Query: 778 -IASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTST 836
+ + + ++ +++ ++ + + L+ KL ++ + A
Sbjct: 1179 ALKASETLFDVAILDMQMPKMS---GEMLAKELKADNQLAAIKLIMMTSMQHKGDAKRFA 1235
Query: 837 DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKI----- 889
+ + KP S+ L A+LQ + V N +++ E P ++ ++ L K+
Sbjct: 1236 E-IGFDGYFPKPATSADLRAALQ--IIVDNGEPLKHAE-PLLTRHYINELNNTKVKPTSK 1291
Query: 890 -------LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFMDIQM 941
L+V+DN VN VA L + E G A +L +D FMDIQM
Sbjct: 1292 ELPQLNALLVEDNKVNQMVAKGILSKLKLTCDIAENGLDAVNKLKAQSTPYDVIFMDIQM 1351
Query: 942 PEMDGYE 948
PEMDGY+
Sbjct: 1352 PEMDGYQ 1358
>gi|440792679|gb|ELR13887.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Acanthamoeba castellanii str. Neff]
Length = 822
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 158/529 (29%), Positives = 263/529 (49%), Gaps = 75/529 (14%)
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489
A A+ AK++F+A +SHEIRTPMNG++GM ++ +DT+L Q+DY++ +S L+++I
Sbjct: 244 ANEANRAKTEFMANMSHEIRTPMNGIIGMTELALDTQLSSEQRDYLKLVHSSALGLLTII 303
Query: 490 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 549
N++LD +K+E+GKL++E + +L L D L + K+ +KG+EL I +P+ L+GD
Sbjct: 304 NDILDFSKIEAGKLDIEHIDMSLHETLGDTLKALALKAHEKGIELLSDIEPTLPDKLVGD 363
Query: 550 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 609
P R RQ+I NL+GN+IKFT KG + ++V + + DS+ + + ++T G P AD+
Sbjct: 364 PVRLRQVIINLVGNAIKFTSKGEVVLSVQMQQRNADSVVLHFAV---RDTGIGIP-ADKL 419
Query: 610 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669
S IF F Q SI+R
Sbjct: 420 --------------------------------------------SVIFEAFSQADGSITR 435
Query: 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 729
+GGTG+GL+IS LV M+G++ S+P+ GS F FTA FG G S H QQ
Sbjct: 436 KYGGTGLGLTISTRLVQLMQGKLTAESVPDKGSLFHFTATFGLGRDES-PHQKQQ----- 489
Query: 730 NSVSSEFQGMKALVVDPRPIRAKVSR---YHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
++ + L+VD ++ H Q + V+ V + + ++ + K
Sbjct: 490 ---TAILSSRRVLLVDANITSRRILSQMLLHWQMEPVLVDTVHEATELFAESSLAQKPFE 546
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP--SV 844
+L+ ++ + + L V + + + +L S ++S+ + + P +
Sbjct: 547 YVLLVSQIPD---DLEGLTVAQFTENRIITKETMIILMLSPTTSKRDILSQHSCPPMCAY 603
Query: 845 IMKPLRSSMLAASL-----QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 899
+ KP+ S L +L + + + + G+ + +KIL+ +DN VN
Sbjct: 604 LNKPVGQSELLYALLKPFEKEPIHMASTGSDTTAGGSPLLTVQGKPKQKILLAEDNVVNQ 663
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
K+A R+G AV + G+KA E H+FD MD+QMPEM G+E
Sbjct: 664 KLAI----RFGYAVTLADNGRKAVEAAR-GHRFDLILMDVQMPEMGGFE 707
>gi|156932728|ref|YP_001436644.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii ATCC
BAA-894]
gi|156530982|gb|ABU75808.1| hypothetical protein ESA_00517 [Cronobacter sakazakii ATCC BAA-894]
Length = 919
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 168/531 (31%), Positives = 260/531 (48%), Gaps = 98/531 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + + DKG+EL + + VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFT+ G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S P+ GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ + GM+ V+ AK +R + + V V S L L Q
Sbjct: 522 --PNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLANTPLTV-VYSPDLASLPQAHYD 578
Query: 782 SKIINMILVEQEVW----EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 837
+ + ++E ++ S +TL + L C Q +L +
Sbjct: 579 ILLYAAPVTDREPLSMRHDQLASAATLTDCLILALPCHAQINAEML-----------KKE 627
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
G S + ++KP+ ++ L L + I ELP + + ++ VDDN
Sbjct: 628 GAS--ACLLKPVTATRLMPLLLEHCRL-----IHARELPEGDQSRMPM--TVMAVDDNPA 678
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L+ VV E G +A E +L P FD MDIQMP+MDG
Sbjct: 679 NLKLIGALLEDMVQHVVLCESGHQAVERAMLQP---FDIILMDIQMPDMDG 726
>gi|152999371|ref|YP_001365052.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
gi|151363989|gb|ABS06989.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
Length = 1782
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 162/528 (30%), Positives = 262/528 (49%), Gaps = 71/528 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++A+AA AK FLA +SHEIRTPMN ++GM + + TELD Q++YV + + ++L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+GKL+++++ F L +L+D+ +FS K+ K +EL ++ VP L
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSIPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYL 1152
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R Q++ NLM N+IKFTE+G + +++ LVE+ D + + + S L+ A
Sbjct: 1153 LGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQA 1212
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
K FK+F Q DT S
Sbjct: 1213 ------KLFKSFTQ---------------------ADT---------------------S 1224
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I K LV M G+IG S GSTF FT H S +
Sbjct: 1225 TTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKL---------HIS---D 1272
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI---ASGSK 783
Q + E +GM LVVD + R ++ +G +V+ V + +S+ A
Sbjct: 1273 GQKLVLEQELEGMSVLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAISRCLLQAYEVA 1332
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
+I+ + + E T+ + L+ ++ + T + +++
Sbjct: 1333 LIDWKMPNMDGLE--TARQIQLQAQSQSQSQPQSQPKILMVSAHADREFLTQIEQLALAG 1390
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNI---RNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
I KP+ +S L + A +G +G + R E + L L G++IL+V+DN +NL+
Sbjct: 1391 YISKPISASRLLDGIMNA--IGREGILPVRRRTEELAPQLLLPLQGKRILLVEDNEMNLE 1448
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
VA+ L++ G + G+ A + L H FD MD QMP MDGY+
Sbjct: 1449 VASEFLEQVGIILSIATNGQIALDKLSQQH-FDLVLMDCQMPVMDGYQ 1495
>gi|229524439|ref|ZP_04413844.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426]
gi|229338020|gb|EEO03037.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426]
Length = 927
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 176/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 461 QLFQAFSQADASISRCYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 666
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 723
>gi|120597632|ref|YP_962206.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
gi|120557725|gb|ABM23652.1| PAS/PAC sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
Length = 1771
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 157/523 (30%), Positives = 254/523 (48%), Gaps = 69/523 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++A+AA AK FLA +SHEIRTPMN ++GM + + T LD Q++YV + + ++L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTALDKKQKNYVEKIERASQSLL 1089
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+GKL+++AV F L +L+D+ +FS K K +EL ++ VP L
Sbjct: 1090 SIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAVAPNVPRHL 1149
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD R Q++ NLM N+IKFTE+G + +++ LVE+ D + + + SG +
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQNDDVTLRFSVRD-----SGIGLT 1204
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D + K FK+F+Q DT S
Sbjct: 1205 DEQQA-KLFKSFSQ---------------------ADT---------------------S 1221
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I K LV M G IG S GSTF FT Q +
Sbjct: 1222 TTRKYGGTGLGLAICKQLVELMGGNIGVESQFGHGSTFYFTVKL------------QISS 1269
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
Q +V E +GM LVVD + R ++ +G V+ V + +S+ +
Sbjct: 1270 GQKLTVGQELEGMSVLVVDDNATARDIMRTALESMGFNVDTVRTGEEAVSRCIQHEYAVA 1329
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+I W+ + +++ + L+ ++ ++ T + + + I
Sbjct: 1330 LI-----DWKMPSMDGLEAARQIQQQAKA--APRILMVSAHANHEFLTQIEQLGLAGYIS 1382
Query: 847 KPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905
KP+ +S L + A+G +R E L L G+++L+V+DN +NL+VA
Sbjct: 1383 KPISASRLLDGIMNALGRAGILPVRRHNEALDPQLLLPLKGKRVLLVEDNEMNLEVATEF 1442
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L++ G + G+ A + L +D MD QMP MDGY+
Sbjct: 1443 LEQVGIILSIATNGQIALDKL-SQQSYDLVLMDCQMPVMDGYQ 1484
>gi|365835928|ref|ZP_09377336.1| signal transduction histidine-protein kinase BarA [Hafnia alvei
ATCC 51873]
gi|364565048|gb|EHM42785.1| signal transduction histidine-protein kinase BarA [Hafnia alvei
ATCC 51873]
Length = 913
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 173/557 (31%), Positives = 263/557 (47%), Gaps = 101/557 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T L+ TQ DY++T + S L+
Sbjct: 278 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVLKTPLNATQSDYLQTIERSANNLL 337
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE + F LR +D+V L + + +KG+EL + I + VPE +
Sbjct: 338 TIINDVLDFSKLEAGKLVLEHIPFLLRETVDEVTVLLAPSAHEKGIELTLNIRNDVPEHV 397
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q++TNL+GN+IKFTEKG+I + V L +E+E + +G ++
Sbjct: 398 IGDPMRIQQVLTNLLGNAIKFTEKGNIDIRVELRSATPHQVELEVLVHD-----TGIGIS 452
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+R S ++F F Q S
Sbjct: 453 ERQQS-------------------------------------------QLFQAFRQADAS 469
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F HN+ Q N
Sbjct: 470 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNKGSTFWFHIQL------ELNHNAPQ-N 522
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+ P G K L ++ P+ A+ + +Q ++V L+Q+ S +
Sbjct: 523 HFP---MQRLAGQKLLYIESNPVAAQCTLDLLQATPLEVSYSP----LLAQVIPDSH-YD 574
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG-----VSI 841
++LV + F ++ + ++ L L I + ++T D I
Sbjct: 575 ILLV---------GLPVNFTSHDSQGEEKLRTALSLADRVILAMPSHTLLDSDELKMRGI 625
Query: 842 PSVIMKPLRSS-----MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 896
S + KPL S+ +L SL + V + N+ L M+ VDDN
Sbjct: 626 RSCLSKPLTSNRLLPILLDNSLPKRAPVVIEHNVERLPLSVMA------------VDDNP 673
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEM------L 950
NLK+ A L + G++A H+ D MDIQMPEMDG L
Sbjct: 674 ANLKLIGALLGELVEQTILCNSGEEAIA-KAKEHRLDIILMDIQMPEMDGIRTSELIRKL 732
Query: 951 PCFESFLLIAILVWKLN 967
P + +IA+ +N
Sbjct: 733 PRYIDTPIIAVTAHAIN 749
>gi|297581077|ref|ZP_06943002.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
gi|297534903|gb|EFH73739.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
Length = 927
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 176/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQTDKLPLC- 666
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 723
>gi|428319240|ref|YP_007117122.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
gi|428242920|gb|AFZ08706.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
PCC 7112]
Length = 1138
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 164/561 (29%), Positives = 272/561 (48%), Gaps = 88/561 (15%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
V I V + + ++E ++ A A KSQFLA +SHEIRTPMNGVL M +L+ L+
Sbjct: 409 VGGIVMVADKINELVEARETALEASRVKSQFLANMSHEIRTPMNGVLAMAQLLLRAPLEQ 468
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q+D ++T S + L+++IN++LD +K+E+G++ LE +F+L + L+ V+ + + +++
Sbjct: 469 KQRDCIQTIYRSAEHLLNVINDILDFSKIEAGEMRLEKYNFDLDSCLESVIEILAHLAEE 528
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
KG+EL + + VP L+GD GR +Q++ NL GN+IKFT++G + V V + +
Sbjct: 529 KGIELNILVDSSVPRKLVGDSGRLKQVLLNLTGNAIKFTDRGQVLVHVTVKQ-------- 580
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
G +AD + L+ SV DTG GI
Sbjct: 581 ------------GNRLADGRQEAR-----------------------LLFSVRDTGIGIS 605
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+ Q+++F F QV S +R +GGTG+GL+I K LV M G+IG S+ G+TF FT
Sbjct: 606 AQGQTKLFQSFSQVDDSPTRPYGGTGLGLAICKQLVEMMGGDIGVRSLLGSGATFWFTVP 665
Query: 710 FGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS 769
+Q+ +P+ E G K LVV +R R Q G + +
Sbjct: 666 L-----------EKQLPVEPH--DPELAGKKLLVVSGSALRRAAVRSLAQSWGARCDEAE 712
Query: 770 DQLQCLSQI-----------ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818
+ LS + G K +++LV+ ++ E D V + +G
Sbjct: 713 TAAEALSWLKNARGGISQHSGEGGKSWDVVLVDLQMPELDAEEFAGKVRSTSTVGS---- 768
Query: 819 KLFLLANSISSSRANTSTDGV---SIPSVIMKPLRSSMLAASLQRAM-GVGNKGNIR--- 871
L+A +++ R + + +++P+R S L +L A+ G G G +
Sbjct: 769 ---LIA--MTALREQPKAEALCSHGFNGYLIEPVRPSRLLETLLAAVKGTGYFGRLEAAN 823
Query: 872 NWELPSMSLRHLLLGR----KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 927
+ +LP ++ + +IL+ +D+ +N +V L G CV G++A +LL
Sbjct: 824 SCKLPPVNSEYATPNSPSSLRILLAEDHPINQQVLVQQLAVLGYQADCVVNGQEALDLL- 882
Query: 928 PPHQFDACFMDIQMPEMDGYE 948
+D MD QMP +DGY+
Sbjct: 883 AKKSYDLVLMDCQMPVLDGYK 903
>gi|421329657|ref|ZP_15780167.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1042(15)]
gi|395928191|gb|EJH38954.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1042(15)]
Length = 921
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 176/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 203 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 262
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 263 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 322
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 323 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 382
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 383 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 427
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 428 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 454
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 455 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 514
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 515 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 563
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 564 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 615
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 616 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 660
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 661 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 717
>gi|351728725|ref|ZP_08946416.1| hypothetical protein AradN_03058 [Acidovorax radicis N35]
Length = 1020
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 169/553 (30%), Positives = 257/553 (46%), Gaps = 100/553 (18%)
Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
A + E ++ + KAE A KS FLA +SHEIRTPMN V+GM + + TEL V Q+D
Sbjct: 246 AALREHEDELVVAQAKAEDASRMKSDFLANMSHEIRTPMNAVIGMSHLALATELTVRQRD 305
Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
Y++ Q SG+ L+ LIN++LD +K+E+GKLE+E V F+L +LD+V +L K KG+E
Sbjct: 306 YIQKIQRSGQHLLGLINDILDFSKIEAGKLEVEVVDFDLHGVLDNVANLLGEKCASKGLE 365
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
L + +P L GDP R QI+ N N++KFT++G I V V E D
Sbjct: 366 LMFDVDSHLPADLRGDPLRLGQILVNYANNAVKFTDEGEIIVRVR--EAARD-------- 415
Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
++ L + V D TG G+ E Q
Sbjct: 416 --AQGVLLRFEVQD------------------------------------TGIGLTDEQQ 437
Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
SR+F F Q S +R +GGTG+GL+ISK L M G++G S P GSTF FTA G G
Sbjct: 438 SRLFRSFEQADTSTTRKYGGTGLGLAISKKLASLMGGDVGVQSAPGRGSTFWFTARLGLG 497
Query: 714 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ST +P + +G + LVVD Q I E++S
Sbjct: 498 AST----------QRPLLPEPDLRGRRVLVVDDSE----------QARQILAELLSSMSF 537
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK------------LF 821
++ +SG++ +++ + F++ GF++ +
Sbjct: 538 SVTLASSGAQAVDLARAADQAGR---PCEIAFLDWKMPGMDGFETARQLAQLPHPPRPVI 594
Query: 822 LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGN--------IRNW 873
+ A+ + G+ + ++ KP+ S L + RA+G + + R
Sbjct: 595 VTAHGRDDVLNELTRSGIGL--MLTKPVNPSQLFDAAMRALGGAQRVDDGRRLPVPPRGA 652
Query: 874 ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFD 933
EL S+ G ++L+VDDN++N +V L G V + G+ A ++L +D
Sbjct: 653 ELASIR------GARVLLVDDNDLNQQVGRELLTSAGLVVDVADNGQAALDML-ARGTYD 705
Query: 934 ACFMDIQMPEMDG 946
MD+QMP MDG
Sbjct: 706 IVLMDMQMPVMDG 718
>gi|153214510|ref|ZP_01949419.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587]
gi|124115312|gb|EAY34132.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587]
Length = 927
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 176/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLTNTSLPKPQADKLPLC- 666
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 723
>gi|229514079|ref|ZP_04403541.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21]
gi|229349260|gb|EEO14217.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21]
Length = 927
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 176/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 666
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 723
>gi|254291653|ref|ZP_04962441.1| sensor histidine kinase/response regulator [Vibrio cholerae
AM-19226]
gi|150422425|gb|EDN14384.1| sensor histidine kinase/response regulator [Vibrio cholerae
AM-19226]
Length = 927
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 176/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 666
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 723
>gi|386060172|ref|YP_005976694.1| sensor/response regulator hybrid [Pseudomonas aeruginosa M18]
gi|347306478|gb|AEO76592.1| sensor/response regulator hybrid [Pseudomonas aeruginosa M18]
Length = 925
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 166/539 (30%), Positives = 252/539 (46%), Gaps = 104/539 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+K+A A KS+FLA +SHEIRTP+NG+LG ++L +EL QQDY+ T Q S ++L+
Sbjct: 274 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLTTIQKSAESLL 333
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+INE+LD +K+E+GKL LE + FNLR ++ D L++ + + +K +EL + P L
Sbjct: 334 GIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDTPIQL 393
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R +QI+TNL+GN+IKFT+ G + V L +E
Sbjct: 394 QGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDE------------------------ 429
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
S D L +SV+DTG G+ E Q +F F Q S
Sbjct: 430 ------------------------SDDRAQLRISVQDTGIGLSEEDQQALFKAFSQADNS 465
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+SR GGTG+GL ISK L+ +M GEIG S P G+ F + S+ N
Sbjct: 466 LSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISLSL---------PKSRDDN 516
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS--DQLQ-CLSQIASGSK 783
+P +S G + +++P+ + + + + G++V + D LQ L G
Sbjct: 517 EEPG--ASWAAGQRVALLEPQELTRRSLHHQLTDFGLEVSEFANLDSLQESLRNPPPGQL 574
Query: 784 IINMIL------------VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
I++ + + Q WE +LGC K +L + ++
Sbjct: 575 PISLAVLGVSAAIHPPEELSQSFWE------------FERLGC----KTLVLCPTTEQAQ 618
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KI 889
+ + + V KP + L LQ + V + + + S GR ++
Sbjct: 619 YHAT---LPDEQVEAKPACTRKLQRKLQELLQVRPTRSDKPHAMVS--------GRPPRL 667
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L VDDN NL + L GA V V+ G A E++ +FD FMD+QMP MDG +
Sbjct: 668 LCVDDNPANLLLVQTLLSDLGAQVTAVDSGYAALEVVQ-RERFDLVFMDVQMPGMDGRQ 725
>gi|386314949|ref|YP_006011114.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens 200]
gi|319427574|gb|ADV55648.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens 200]
Length = 1770
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 157/523 (30%), Positives = 254/523 (48%), Gaps = 69/523 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++A+AA AK FLA +SHEIRTPMN ++GM + + T LD Q++YV + + ++L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTALDKKQKNYVEKIERASQSLL 1089
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+GKL+++AV F L +L+D+ +FS K K +EL ++ VP L
Sbjct: 1090 SIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAVAPNVPRHL 1149
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD R Q++ NLM N+IKFTE+G + +++ LVE+ D + + + SG +
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQNDDVTLRFSVRD-----SGIGLT 1204
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D + K FK+F+Q DT S
Sbjct: 1205 DEQQA-KLFKSFSQ---------------------ADT---------------------S 1221
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I K LV M G IG S GSTF FT Q +
Sbjct: 1222 TTRKYGGTGLGLAICKQLVELMGGNIGVESQFGHGSTFYFTVKL------------QISS 1269
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
Q +V E +GM LVVD + R ++ +G V+ V + +S+ +
Sbjct: 1270 GQKLTVGQELEGMSVLVVDDNATARDIMRTALESMGFNVDTVRTGEEAVSRCMQHEYAVA 1329
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+I W+ + +++ + L+ ++ ++ T + + + I
Sbjct: 1330 LI-----DWKMPSMDGLEAARQIQQQAKA--APRILMVSAHANHEFLTQIEQLGLAGYIS 1382
Query: 847 KPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905
KP+ +S L + A+G +R E L L G+++L+V+DN +NL+VA
Sbjct: 1383 KPISASRLLDGIMNALGRAGILPVRRHNEALDPQLLLPLKGKRVLLVEDNEMNLEVATEF 1442
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L++ G + G+ A + L +D MD QMP MDGY+
Sbjct: 1443 LEQVGIILSIATNGQIALDKL-SQQSYDLVLMDCQMPVMDGYQ 1484
>gi|121728971|ref|ZP_01681975.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
gi|147673482|ref|YP_001217955.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O395]
gi|153826897|ref|ZP_01979564.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
gi|227118895|ref|YP_002820791.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
gi|422923746|ref|ZP_16956890.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
BJG-01]
gi|424010437|ref|ZP_17753370.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-44C1]
gi|424592152|ref|ZP_18031576.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1037(10)]
gi|121628737|gb|EAX61204.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
gi|146315365|gb|ABQ19904.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
gi|149739260|gb|EDM53522.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
gi|227014345|gb|ACP10555.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
gi|341643549|gb|EGS67831.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
BJG-01]
gi|408029783|gb|EKG66485.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1037(10)]
gi|408863066|gb|EKM02562.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-44C1]
Length = 927
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 176/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 666
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 723
>gi|15596125|ref|NP_249619.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
gi|107100384|ref|ZP_01364302.1| hypothetical protein PaerPA_01001409 [Pseudomonas aeruginosa PACS2]
gi|116048851|ref|YP_792348.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218893103|ref|YP_002441972.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58]
gi|254239279|ref|ZP_04932602.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719]
gi|254245212|ref|ZP_04938534.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192]
gi|296390719|ref|ZP_06880194.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1]
gi|416858722|ref|ZP_11913491.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 138244]
gi|416875649|ref|ZP_11918807.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 152504]
gi|418583609|ref|ZP_13147678.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P1]
gi|418588974|ref|ZP_13152904.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P2]
gi|421155575|ref|ZP_15615050.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
14886]
gi|421162461|ref|ZP_15621303.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
25324]
gi|421176074|ref|ZP_15633743.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CI27]
gi|421182074|ref|ZP_15639559.1| sensor/response regulator hybrid [Pseudomonas aeruginosa E2]
gi|421515550|ref|ZP_15962236.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO579]
gi|424940011|ref|ZP_18355774.1| sensor/response regulator hybrid [Pseudomonas aeruginosa NCMG1179]
gi|451987425|ref|ZP_21935583.1| BarA sensory histidine kinase (= VarS = GacS) [Pseudomonas
aeruginosa 18A]
gi|9946832|gb|AAG04317.1|AE004527_4 sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
gi|2623815|gb|AAB86557.1| two component sensor [Pseudomonas aeruginosa PAO1]
gi|115584072|gb|ABJ10087.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126171210|gb|EAZ56721.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719]
gi|126198590|gb|EAZ62653.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192]
gi|218773331|emb|CAW29143.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58]
gi|334839207|gb|EGM17900.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 138244]
gi|334841748|gb|EGM20370.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 152504]
gi|346056457|dbj|GAA16340.1| sensor/response regulator hybrid [Pseudomonas aeruginosa NCMG1179]
gi|375047217|gb|EHS39766.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P1]
gi|375052133|gb|EHS44592.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P2]
gi|404349278|gb|EJZ75615.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO579]
gi|404520272|gb|EKA30952.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
14886]
gi|404531425|gb|EKA41380.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CI27]
gi|404534541|gb|EKA44273.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
25324]
gi|404542794|gb|EKA52103.1| sensor/response regulator hybrid [Pseudomonas aeruginosa E2]
gi|451755043|emb|CCQ88106.1| BarA sensory histidine kinase (= VarS = GacS) [Pseudomonas
aeruginosa 18A]
gi|453047953|gb|EME95666.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
PA21_ST175]
Length = 925
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 166/539 (30%), Positives = 252/539 (46%), Gaps = 104/539 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+K+A A KS+FLA +SHEIRTP+NG+LG ++L +EL QQDY+ T Q S ++L+
Sbjct: 274 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLTTIQKSAESLL 333
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+INE+LD +K+E+GKL LE + FNLR ++ D L++ + + +K +EL + P L
Sbjct: 334 GIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDTPIQL 393
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R +QI+TNL+GN+IKFT+ G + V L +E
Sbjct: 394 QGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDE------------------------ 429
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
S D L +SV+DTG G+ E Q +F F Q S
Sbjct: 430 ------------------------SDDRAQLRISVQDTGIGLSEEDQQALFKAFSQADNS 465
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+SR GGTG+GL ISK L+ +M GEIG S P G+ F + S+ N
Sbjct: 466 LSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISLSL---------PKSRDDN 516
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS--DQLQ-CLSQIASGSK 783
+P +S G + +++P+ + + + + G++V + D LQ L G
Sbjct: 517 EEPG--ASWAAGQRVALLEPQELTRRSLHHQLTDFGLEVSEFADLDSLQESLRNPPPGQL 574
Query: 784 IINMIL------------VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
I++ + + Q WE +LGC K +L + ++
Sbjct: 575 PISLAVLGVSAAIHPPEELSQSFWE------------FERLGC----KTLVLCPTTEQAQ 618
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KI 889
+ + + V KP + L LQ + V + + + S GR ++
Sbjct: 619 YHAT---LPDEQVEAKPACTRKLQRKLQELLQVRPTRSDKPHAMVS--------GRPPRL 667
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L VDDN NL + L GA V V+ G A E++ +FD FMD+QMP MDG +
Sbjct: 668 LCVDDNPANLLLVQTLLSDLGAQVTAVDSGYAALEVVQ-RERFDLVFMDVQMPGMDGRQ 725
>gi|343497197|ref|ZP_08735273.1| two-component system sensor protein [Vibrio nigripulchritudo ATCC
27043]
gi|342819664|gb|EGU54503.1| two-component system sensor protein [Vibrio nigripulchritudo ATCC
27043]
Length = 1063
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 173/579 (29%), Positives = 279/579 (48%), Gaps = 88/579 (15%)
Query: 389 ISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKK---KAEAADVAKSQFLATVS 445
+ IG+ + +G I QAT+ I + E EL KA+ A KS FLA +S
Sbjct: 253 VPAEIGMTIFQ--LGDICQATL-FIRDITERKLAERELNAAMAKAKEAVEVKSMFLANMS 309
Query: 446 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505
HEIRTPMN ++GM + + T++ Q+DYV +SG L+ +IN++LD +K+E+GKLE+
Sbjct: 310 HEIRTPMNAIIGMAHLALKTDMSPKQRDYVSKIHSSGTLLLGIINDILDFSKIEAGKLEM 369
Query: 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 565
E++ F L + +V ++ K+ +K +EL +I +P+ LIGDP R Q+I NL+ NS+
Sbjct: 370 ESIEFTLDDVFRNVSTVTGQKAFEKNLELLFHIPRTIPQQLIGDPLRIGQVIINLVNNSV 429
Query: 566 KFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 625
KFTE+G I V+V L+E++ D IE+E + VAD
Sbjct: 430 KFTEQGEITVSVDLLEQIGDRIELE------------FTVAD------------------ 459
Query: 626 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 685
TG G+ E SR+FT F Q S +R +GGTG+GLSI + LV
Sbjct: 460 ------------------TGIGMTREQSSRLFTAFTQADGSTTRKYGGTGLGLSICRRLV 501
Query: 686 GRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVD 745
M G I S P+ GS F F F ++ + + +P+ + +K L+VD
Sbjct: 502 ELMGGTIRVDSEPDEGSRFVFNVWFDLADQIASSKD-RLTALRPDMLDE----LKVLIVD 556
Query: 746 PRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN---MILVEQEVWEKD--TS 800
++ ++ L IQ EV + + + K N ++L++ + E + +
Sbjct: 557 DNRHAVEIMSEMLETLPIQPEVAHNGKEAFDMVEQHIKDENPYSLVLMDWNMPELNGIET 616
Query: 801 VSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL-- 858
VS + N +G K+ ++ + +++ + I + + KP+ S L L
Sbjct: 617 VSMMRDN----IGNESLPKV-VMVTAYDKDEVKKASNDIEIANYLTKPVSQSSLYDCLIE 671
Query: 859 -----QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAV 913
RA+ + + +R+ + G ++L+ +DN +N ++A + G V
Sbjct: 672 LFTDVDRALEIAEE--VRSEDNDEFK------GLRVLLTEDNEINQQIAFELMSGKGMEV 723
Query: 914 VCVERGKKATELLMPPHQ----FDACFMDIQMPEMDGYE 948
GK+A E L + FD FMD+QMP MDGYE
Sbjct: 724 TIANNGKEALEHLSESGEGEVPFDIMFMDLQMPVMDGYE 762
>gi|261342213|ref|ZP_05970071.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316]
gi|288315547|gb|EFC54485.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316]
Length = 919
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 166/534 (31%), Positives = 256/534 (47%), Gaps = 104/534 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + +EL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 TIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F V +G T
Sbjct: 475 ISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNKGSTFWFHINLDLNPNVLTDGPITDCL 534
Query: 720 HNSQQMNNQPNSVSSEFQGMKALVVDPRPI-------RAKVSRYHIQRLGIQVEVVSDQL 772
+ +PN+ +++ + L P + V Y I +GI V +
Sbjct: 535 KGMRLAYVEPNAAAAQCT-LDVLSTTPLEVIYSPTFSALAVEHYDILLMGIPVTFTGE-- 591
Query: 773 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 832
+ ++QE K +++ L L C Q L N
Sbjct: 592 ---------------LTMQQERLAKAAAMTDYL---LLALPCHAQINAEELKN------- 626
Query: 833 NTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIV 892
DG + + ++KPL ++ L +L + N+ LP ++ H L ++ V
Sbjct: 627 ----DGAA--ACLLKPLTATRLLPALTEYCRLSNQ------PLPLVNDEH-KLPMTVMAV 673
Query: 893 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
DDN NLK+ L+ V + G +A E QFD MDIQMP MDG
Sbjct: 674 DDNPANLKLIGVLLEDQVQHVELCDSGAQAVE-QAKQMQFDLILMDIQMPGMDG 726
>gi|392985595|ref|YP_006484182.1| sensor/response regulator hybrid [Pseudomonas aeruginosa DK2]
gi|419753893|ref|ZP_14280291.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
PADK2_CF510]
gi|384399832|gb|EIE46197.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
PADK2_CF510]
gi|392321100|gb|AFM66480.1| sensor/response regulator hybrid [Pseudomonas aeruginosa DK2]
Length = 925
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 166/539 (30%), Positives = 252/539 (46%), Gaps = 104/539 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+K+A A KS+FLA +SHEIRTP+NG+LG ++L +EL QQDY+ T Q S ++L+
Sbjct: 274 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLTTIQKSAESLL 333
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+INE+LD +K+E+GKL LE + FNLR ++ D L++ + + +K +EL + P L
Sbjct: 334 GIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDTPIQL 393
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R +QI+TNL+GN+IKFT+ G + V L +E
Sbjct: 394 QGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDE------------------------ 429
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
S D L +SV+DTG G+ E Q +F F Q S
Sbjct: 430 ------------------------SDDRAQLRISVQDTGIGLSEEDQQALFKAFSQADNS 465
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+SR GGTG+GL ISK L+ +M GEIG S P G+ F + S+ N
Sbjct: 466 LSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISLSL---------PKSRDDN 516
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS--DQLQ-CLSQIASGSK 783
+P +S G + +++P+ + + + + G++V + D LQ L G
Sbjct: 517 EEPG--ASWAAGQRVALLEPQELTRRSLHHQLTDFGLEVSEFADLDSLQESLRNPPPGQL 574
Query: 784 IINMIL------------VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
I++ + + Q WE +LGC K +L + ++
Sbjct: 575 PISLAVLGVSAAIHPPEELSQSFWE------------FERLGC----KTLVLCPTTEQAQ 618
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KI 889
+ + + V KP + L LQ + V + + + S GR ++
Sbjct: 619 YHAT---LPDEQVEAKPACTRKLQRKLQELLQVRPTRSDKPHAMVS--------GRPPRL 667
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L VDDN NL + L GA V V+ G A E++ +FD FMD+QMP MDG +
Sbjct: 668 LCVDDNPANLLLVQTLLSDLGAQVTAVDSGYAALEVVQ-RERFDLVFMDVQMPGMDGRQ 725
>gi|359782103|ref|ZP_09285325.1| two-component system sensor-response regulator hybrid protein
[Pseudomonas psychrotolerans L19]
gi|359369896|gb|EHK70465.1| two-component system sensor-response regulator hybrid protein
[Pseudomonas psychrotolerans L19]
Length = 1620
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 171/545 (31%), Positives = 258/545 (47%), Gaps = 74/545 (13%)
Query: 410 VNR-IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD 468
+NR I + E H + E + +A+ A AKS FLA +SHEIRTPMN VLGML +L T LD
Sbjct: 870 INRDITEQLELEHRLREERTRADLASQAKSSFLANMSHEIRTPMNAVLGMLQLLQRTALD 929
Query: 469 VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQ 528
Q DY+ AQ + ++L+ L+N+VLD +K+E+GKL+L+ F+L +L ++ + SG S
Sbjct: 930 ARQGDYLTKAQQAARSLLGLLNDVLDYSKIEAGKLQLDVHPFSLEQVLRNLGVVLSGNSG 989
Query: 529 DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 588
+K VE+ ++ +P LIGD R +QI+ NL GN++KFTE G + V+V
Sbjct: 990 EKNVEINYHLDAGLPTALIGDSLRLQQILINLAGNALKFTEAGQVLVSVR---------- 1039
Query: 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 648
+LS + L L SV+DTG GI
Sbjct: 1040 ---QLSRADGQL-----------------------------------RLEFSVQDTGIGI 1061
Query: 649 PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708
Q ++F F Q SISR GGTG+GL+I K LV M G++ S +GS F F A
Sbjct: 1062 SPAQQEQLFQGFTQAEASISRRFGGTGLGLAICKRLVELMDGQLQVESELGVGSRFWFDA 1121
Query: 709 VFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
S Q Q V + L+ D + +V + LG QV++V
Sbjct: 1122 ALAVDS---------QGEAQLAPVRR-----RVLLADDNTLVGEVLVETLAALGWQVDLV 1167
Query: 769 SDQLQCLSQIASGSKII---NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 825
+ L+++A + +L++ W L LR+ + K+ +L
Sbjct: 1168 TSGAAALARVAQAQQQAQPYEAVLMD---WRMPDGDGLLAARQLRERQADNRPKVIMLTG 1224
Query: 826 SISS--SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL 883
+ A S D + KP+ + + ++RA+G + + S H
Sbjct: 1225 FGRDFLTEAQQSDD-APFDDYLTKPVTPAQIVEVVERALGAEIPAGVHAAAVVDES--HR 1281
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
L G ++L+V+DN +N +VAA L GA V E G + E ++ D MD+QMP+
Sbjct: 1282 LAGLRLLVVEDNALNRQVAAELLLAQGAQVELAEGGLQGVERVLSGGPLDVVIMDMQMPD 1341
Query: 944 MDGYE 948
+DG E
Sbjct: 1342 IDGLE 1346
>gi|421169703|ref|ZP_15627710.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
700888]
gi|404525842|gb|EKA36090.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
700888]
Length = 925
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 166/539 (30%), Positives = 252/539 (46%), Gaps = 104/539 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+K+A A KS+FLA +SHEIRTP+NG+LG ++L +EL QQDY+ T Q S ++L+
Sbjct: 274 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLTTIQKSAESLL 333
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+INE+LD +K+E+GKL LE + FNLR ++ D L++ + + +K +EL + P L
Sbjct: 334 GIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDTPIQL 393
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R +QI+TNL+GN+IKFT+ G + V L +E
Sbjct: 394 QGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDE------------------------ 429
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
S D L +SV+DTG G+ E Q +F F Q S
Sbjct: 430 ------------------------SDDRAQLRISVQDTGIGLSEEDQQALFKAFSQADNS 465
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+SR GGTG+GL ISK L+ +M GEIG S P G+ F + S+ N
Sbjct: 466 LSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISLSL---------PKSRDDN 516
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS--DQLQ-CLSQIASGSK 783
+P +S G + +++P+ + + + + G++V + D LQ L G
Sbjct: 517 EEPG--ASWAAGQRVALLEPQELTRRSLHHQLTDFGLEVSEFADLDSLQESLRNPPPGQL 574
Query: 784 IINMIL------------VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
I++ + + Q WE +LGC K +L + ++
Sbjct: 575 PISLAVLGVSAAIHPPEELSQSFWE------------FERLGC----KTLVLCPTTEQAQ 618
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KI 889
+ + + V KP + L LQ + V + + + S GR ++
Sbjct: 619 YHAT---LPDEQVEAKPACTRKLQRKLQELLQVRPTRSDKPHAMVS--------GRPPRL 667
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L VDDN NL + L GA V V+ G A E++ +FD FMD+QMP MDG +
Sbjct: 668 LCVDDNPANLLLVQTLLSDLGAQVTAVDSGYAALEVVQ-RERFDLVFMDVQMPGMDGRQ 725
>gi|343502907|ref|ZP_08740745.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio tubiashii ATCC 19109]
gi|418479493|ref|ZP_13048574.1| two-component regulatory system multi-sensor hybrid histidine
kinase [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342812985|gb|EGU47967.1| putative two-component regulatory system multi-sensor hybrid
histidine kinase [Vibrio tubiashii ATCC 19109]
gi|384572892|gb|EIF03397.1| two-component regulatory system multi-sensor hybrid histidine
kinase [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 1199
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 158/527 (29%), Positives = 262/527 (49%), Gaps = 64/527 (12%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+ A++A+ AKS FLA +SHEIRTPMN ++GM + + T+L Q++Y+ + S +L+
Sbjct: 471 RDDADSANSAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQRNYIHKVKLSADSLL 530
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
LIN++LD +K+E+GKL++E V F+L +LD++ +L ++ ++G+EL ++I VP TL
Sbjct: 531 GLINDILDFSKIEAGKLDIENVDFHLENVLDNISNLVGLRASERGLELLIHIDRDVPTTL 590
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R QI+ NL N++KFTEKG I +++ + E D + +E + V
Sbjct: 591 VGDPLRLGQILINLANNAVKFTEKGEIKISIRVAERNGDDLVLE------------FSVE 638
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D +G G+ E +++F+ F Q S
Sbjct: 639 D------------------------------------SGIGMTAEQTAKLFSKFTQADSS 662
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+ISK L M G+I S GS FTFT S S+ +++
Sbjct: 663 TTRKYGGTGLGLAISKELSQLMGGDIRVESEAGKGSCFTFTV----ASKVSHALKQEEI- 717
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSK 783
+V E ++ LVVD + ++ L VS D L L+Q S +
Sbjct: 718 ----AVPVELGKLRVLVVDDNASARIIVEDILESLRFDAHSVSSADDALAELNQALSNEQ 773
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
++++ + ++ KD + L + + L L A G+++PS
Sbjct: 774 PYDLLITDWQMPGKD-GIDLLEMVKAQISQSQQPKPLMLTAFGREELTEIIEQRGITVPS 832
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNNVNLKV 901
++ KP+ +S L ++ GV + R+ L ++ L G ++L+V+DN +N ++
Sbjct: 833 ILDKPITASHLFDAIVSLYGVDHARLSRSEAEEQNQLANVQQLAGAQLLLVEDNEINQEL 892
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
A L+ V E G+ A + L ++FD MD QMP MDGYE
Sbjct: 893 AIELLEGQQMHVTVAENGQVALD-LYKTNEFDGILMDCQMPIMDGYE 938
>gi|261822787|ref|YP_003260893.1| hybrid sensory histidine kinase BarA [Pectobacterium wasabiae
WPP163]
gi|261606800|gb|ACX89286.1| multi-sensor hybrid histidine kinase [Pectobacterium wasabiae
WPP163]
Length = 928
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 171/533 (32%), Positives = 254/533 (47%), Gaps = 94/533 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T L+ TQ DY+ T + S L+
Sbjct: 280 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLNTTQTDYLLTIERSANNLL 339
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE + F+L + LDDV+ L + + +KG+EL + I + VPE
Sbjct: 340 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQY 399
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R +QIITNL+GN+IKFTE+G+I + V + +++E
Sbjct: 400 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLE---------------- 443
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
V + DTG GI QS++F F Q S
Sbjct: 444 --------------------------------VQICDTGIGIAELQQSQLFQAFRQADTS 471
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S N GSTF F H + +N
Sbjct: 472 ISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWF-------------HITLPLN 518
Query: 727 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
P++V E QG V+ PI A+ + + + + V Q+ G
Sbjct: 519 --PHTVPIEPVYTMLQGKHLAYVEYHPIAAQATLDILSQTPLMVSYSP----TFEQLPEG 572
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
+++L+ ++T + + LR + C + L S++ A +
Sbjct: 573 E--FDILLLAIPAQYRNTLLD--YTPRLRDI-CRRAPCVILALPSLAQMDAE-QLKAFGV 626
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH-------LLLGRKILIVDD 894
+ + KPL +S L LQ N + LPS + H L ++ VDD
Sbjct: 627 HACLSKPLAASRLLPLLQ------NSTLFQLSFLPSDTTSHQGAVRHPARLPLSVMAVDD 680
Query: 895 NNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFMDIQMPEMDG 946
N NLK+ L+ ++ E G +A + M HQ D MDIQMP MDG
Sbjct: 681 NPANLKLIGTLLEEQVDTIILCESGTEAIAQAKM--HQIDIILMDIQMPGMDG 731
>gi|384425392|ref|YP_005634750.1| BarA sensory histidine kinase [Vibrio cholerae LMA3984-4]
gi|327484945|gb|AEA79352.1| BarA sensory histidine kinase [Vibrio cholerae LMA3984-4]
Length = 916
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 177/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 198 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 257
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 258 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 317
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 318 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 377
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 378 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 422
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 423 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 449
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 509
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 510 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 558
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T V G S LA+ +
Sbjct: 559 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMTHHV------IVGVPSTELALADQL 610
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 611 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 655
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 656 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 712
>gi|255746876|ref|ZP_05420821.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101]
gi|262162041|ref|ZP_06031057.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1]
gi|379742241|ref|YP_005334210.1| hybrid sensory histidine kinase BarA [Vibrio cholerae IEC224]
gi|417814468|ref|ZP_12461121.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-49A2]
gi|417818208|ref|ZP_12464836.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HCUF01]
gi|418339416|ref|ZP_12948306.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-23A1]
gi|418346987|ref|ZP_12951740.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-28A1]
gi|418355750|ref|ZP_12958469.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-61A1]
gi|419827397|ref|ZP_14350896.1| his Kinase A domain protein [Vibrio cholerae CP1033(6)]
gi|421318500|ref|ZP_15769068.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1032(5)]
gi|421322202|ref|ZP_15772754.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1038(11)]
gi|421325999|ref|ZP_15776523.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1041(14)]
gi|421333613|ref|ZP_15784090.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1046(19)]
gi|421340583|ref|ZP_15791015.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-20A2]
gi|421348407|ref|ZP_15798784.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-46A1]
gi|422897543|ref|ZP_16934982.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-40A1]
gi|422903742|ref|ZP_16938706.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-48A1]
gi|422907626|ref|ZP_16942419.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-70A1]
gi|422914466|ref|ZP_16948970.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HFU-02]
gi|422926670|ref|ZP_16959682.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-38A1]
gi|423145993|ref|ZP_17133586.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-19A1]
gi|423150669|ref|ZP_17137982.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-21A1]
gi|423154503|ref|ZP_17141667.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-22A1]
gi|423157571|ref|ZP_17144663.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-32A1]
gi|423161144|ref|ZP_17148082.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-33A2]
gi|423165973|ref|ZP_17152692.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-48B2]
gi|423732002|ref|ZP_17705303.1| his Kinase A domain protein [Vibrio cholerae HC-17A1]
gi|423771404|ref|ZP_17713568.1| his Kinase A domain protein [Vibrio cholerae HC-50A2]
gi|423896780|ref|ZP_17727612.1| his Kinase A domain protein [Vibrio cholerae HC-62A1]
gi|423931983|ref|ZP_17732005.1| his Kinase A domain protein [Vibrio cholerae HC-77A1]
gi|424003418|ref|ZP_17746492.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-17A2]
gi|424007212|ref|ZP_17750181.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-37A1]
gi|424025192|ref|ZP_17764841.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-62B1]
gi|424028078|ref|ZP_17767679.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-69A1]
gi|424587360|ref|ZP_18026938.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1030(3)]
gi|424596014|ref|ZP_18035332.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1040(13)]
gi|424602685|ref|ZP_18041824.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1047(20)]
gi|424607619|ref|ZP_18046559.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1050(23)]
gi|424611435|ref|ZP_18050273.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-39A1]
gi|424614263|ref|ZP_18053047.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-41A1]
gi|424618230|ref|ZP_18056900.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-42A1]
gi|424623016|ref|ZP_18061519.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-47A1]
gi|424645975|ref|ZP_18083709.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-56A2]
gi|424653742|ref|ZP_18091121.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-57A2]
gi|440710678|ref|ZP_20891326.1| BarA sensory histidine kinase [Vibrio cholerae 4260B]
gi|443504792|ref|ZP_21071744.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-64A1]
gi|443508698|ref|ZP_21075453.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-65A1]
gi|443512536|ref|ZP_21079169.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-67A1]
gi|443516095|ref|ZP_21082600.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-68A1]
gi|443519886|ref|ZP_21086274.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-71A1]
gi|443524781|ref|ZP_21090984.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-72A2]
gi|443532365|ref|ZP_21098379.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-7A1]
gi|443536179|ref|ZP_21102046.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-80A1]
gi|443539707|ref|ZP_21105560.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-81A1]
gi|255735278|gb|EET90678.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101]
gi|262028290|gb|EEY46947.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1]
gi|340035804|gb|EGQ96782.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HCUF01]
gi|340036954|gb|EGQ97930.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-49A2]
gi|341619799|gb|EGS45601.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-48A1]
gi|341619916|gb|EGS45703.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-70A1]
gi|341620721|gb|EGS46487.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-40A1]
gi|341636278|gb|EGS60980.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HFU-02]
gi|341645671|gb|EGS69800.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-38A1]
gi|356417346|gb|EHH70964.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-21A1]
gi|356422237|gb|EHH75720.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-19A1]
gi|356427708|gb|EHH80949.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-22A1]
gi|356428376|gb|EHH81603.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-23A1]
gi|356429515|gb|EHH82731.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-28A1]
gi|356439041|gb|EHH92041.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-32A1]
gi|356443637|gb|EHH96456.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-33A2]
gi|356449564|gb|EHI02310.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-48B2]
gi|356452248|gb|EHI04927.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-61A1]
gi|378795751|gb|AFC59222.1| hybrid sensory histidine kinase BarA [Vibrio cholerae IEC224]
gi|395916758|gb|EJH27588.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1032(5)]
gi|395917837|gb|EJH28665.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1041(14)]
gi|395917942|gb|EJH28769.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1038(11)]
gi|395929015|gb|EJH39768.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1046(19)]
gi|395939866|gb|EJH50548.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-20A2]
gi|395942986|gb|EJH53662.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-46A1]
gi|395957731|gb|EJH68260.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-56A2]
gi|395958234|gb|EJH68734.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-57A2]
gi|395960865|gb|EJH71220.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-42A1]
gi|395970118|gb|EJH79925.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-47A1]
gi|395972029|gb|EJH81650.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1030(3)]
gi|395974488|gb|EJH84014.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1047(20)]
gi|408006175|gb|EKG44347.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-39A1]
gi|408010757|gb|EKG48606.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-41A1]
gi|408030564|gb|EKG67219.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1040(13)]
gi|408041953|gb|EKG78036.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1050(23)]
gi|408608187|gb|EKK81590.1| his Kinase A domain protein [Vibrio cholerae CP1033(6)]
gi|408622447|gb|EKK95431.1| his Kinase A domain protein [Vibrio cholerae HC-17A1]
gi|408632864|gb|EKL05292.1| his Kinase A domain protein [Vibrio cholerae HC-50A2]
gi|408653575|gb|EKL24737.1| his Kinase A domain protein [Vibrio cholerae HC-77A1]
gi|408654068|gb|EKL25211.1| his Kinase A domain protein [Vibrio cholerae HC-62A1]
gi|408844311|gb|EKL84443.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-37A1]
gi|408845067|gb|EKL85188.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-17A2]
gi|408869590|gb|EKM08886.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-62B1]
gi|408878354|gb|EKM17364.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-69A1]
gi|439974007|gb|ELP50211.1| BarA sensory histidine kinase [Vibrio cholerae 4260B]
gi|443430871|gb|ELS73429.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-64A1]
gi|443434701|gb|ELS80853.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-65A1]
gi|443438594|gb|ELS88314.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-67A1]
gi|443442631|gb|ELS95939.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-68A1]
gi|443446520|gb|ELT03184.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-71A1]
gi|443449234|gb|ELT09535.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-72A2]
gi|443457755|gb|ELT25152.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-7A1]
gi|443460682|gb|ELT31766.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-80A1]
gi|443464837|gb|ELT39498.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-81A1]
Length = 916
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 176/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 198 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 257
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 258 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 317
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 318 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 377
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 378 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 422
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 423 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 449
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 509
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 510 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 558
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 559 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 610
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 611 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 655
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 656 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 712
>gi|313105812|ref|ZP_07792075.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016]
gi|386064653|ref|YP_005979957.1| sensor/response regulator hybrid [Pseudomonas aeruginosa NCGM2.S1]
gi|310878577|gb|EFQ37171.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016]
gi|348033212|dbj|BAK88572.1| sensor/response regulator hybrid [Pseudomonas aeruginosa NCGM2.S1]
Length = 925
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 166/539 (30%), Positives = 252/539 (46%), Gaps = 104/539 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+K+A A KS+FLA +SHEIRTP+NG+LG ++L +EL QQDY+ T Q S ++L+
Sbjct: 274 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLTTIQKSAESLL 333
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+INE+LD +K+E+GKL LE + FNLR ++ D L++ + + +K +EL + P L
Sbjct: 334 GIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDTPIQL 393
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R +QI+TNL+GN+IKFT+ G + V L +E
Sbjct: 394 QGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDE------------------------ 429
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
S D L +SV+DTG G+ E Q +F F Q S
Sbjct: 430 ------------------------SDDRAQLRISVQDTGIGLSEEDQQALFKAFSQADNS 465
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+SR GGTG+GL ISK L+ +M GEIG S P G+ F + S+ N
Sbjct: 466 LSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISLSL---------PKSRDDN 516
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD--QLQ-CLSQIASGSK 783
+P +S G + +++P+ + + + + G++V +D LQ L G
Sbjct: 517 EEPG--ASWAAGQRVALLEPQELTRRSLHHQLTDFGLEVSEFADLNSLQESLRNPPPGQL 574
Query: 784 IINMIL------------VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
I++ + + Q WE +LGC K +L + ++
Sbjct: 575 PISLAVLGVSAAIHPPEELSQSFWE------------FERLGC----KTLVLCPTTEQAQ 618
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KI 889
+ + + V KP + L LQ + V + + + S GR ++
Sbjct: 619 YHAT---LPDEQVEAKPACTRKLQRKLQELLQVRPTRSDKPHAMVS--------GRPPRL 667
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L VDDN NL + L GA V V+ G A E++ +FD FMD+QMP MDG +
Sbjct: 668 LCVDDNPANLLLVQTLLSDLGAQVTAVDSGYAALEVVQ-RERFDLVFMDVQMPGMDGRQ 725
>gi|149912708|ref|ZP_01901242.1| sensor histidine kinase/response regulator [Roseobacter sp.
AzwK-3b]
gi|149813114|gb|EDM72940.1| sensor histidine kinase/response regulator [Roseobacter sp.
AzwK-3b]
Length = 728
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 169/530 (31%), Positives = 255/530 (48%), Gaps = 88/530 (16%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ + +++AEAA+ AKS FLA +SHEIRTPMNGV+GM ++LMDT+L Q Y T + SG
Sbjct: 202 LQDARRRAEAANHAKSSFLANMSHEIRTPMNGVVGMAELLMDTDLTEEQNLYANTIRKSG 261
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
+AL+ +IN+VLD +K+E+ KL L F+L + +++ L ++DK +EL V +
Sbjct: 262 EALLVIINDVLDYSKIEAEKLHLHEEPFDLERTVHELVMLLQPNARDKELELLVDYDMFL 321
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P GDPGR RQ++TNL+GN++KFTEKGH+ V V G
Sbjct: 322 PTRFHGDPGRIRQVLTNLIGNAVKFTEKGHVLVRVV-----------------------G 358
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI-NLIVSVEDTGQGIPLEAQSRIFTPFM 661
P A +P AD I +L ++VEDTG GI + Q+ IF F
Sbjct: 359 MPAA------------------APESPEHADAIAHLRITVEDTGIGIAPDKQAHIFGEFN 400
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
QV + +R GTG+GL+IS+ L+ M+G+I S GSTF + +E
Sbjct: 401 QVEDAKNRRFEGTGLGLAISRKLIAMMQGDIWIGSEEGRGSTFGISLNL-----PVHERL 455
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
M P+S+ + L+VDP+ + + + +G+ V S Q L +
Sbjct: 456 DPDMLRLPDSLR------RVLIVDPQDVSRTILEKQLASVGLDVRGCSSGAQALELCGA- 508
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
++IL E + D LR+ G + LL+ + + + +S
Sbjct: 509 ---TDLILSEHHMPGMD---GMELAEALRE--AGQDVPIVLLSPFAGGTYVDPARPLLS- 559
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+V+ KP S L A+L +A P R + ++L +DN N V
Sbjct: 560 -AVLQKPATRSDLLAALHKAA-------------PPEPARPM----RVLAAEDNRTNRLV 601
Query: 902 AAAGLKRYGAAVVCVERGKKATEL---LMPPHQFDACFMDIQMPEMDGYE 948
++ LK + E G++A +L + P D FMDI MP MDG E
Sbjct: 602 FSSMLKDLNIELHFAEDGRQAVDLYGEVRP----DIVFMDISMPGMDGKE 647
>gi|407778474|ref|ZP_11125738.1| hybrid sensory histidine kinase [Nitratireductor pacificus pht-3B]
gi|407299845|gb|EKF18973.1| hybrid sensory histidine kinase [Nitratireductor pacificus pht-3B]
Length = 824
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 180/601 (29%), Positives = 272/601 (45%), Gaps = 112/601 (18%)
Query: 384 WPLLAISTSI--GILVIASLVGHIFQATVNRIAKVEEDYH----GMMELKKKAEAADVAK 437
W LL +S +I L+IA G +F +NR++K +D H + K KA++AD K
Sbjct: 232 WGLLGVSLAIVSACLLIA---GRVFVPMMNRVSKAHQDLHDANISLASEKIKAQSADRTK 288
Query: 438 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497
S+FLA +SHEIRTPMNGV+GM ++L T LD Q +V SG AL+++IN++LD +K
Sbjct: 289 SEFLANMSHEIRTPMNGVMGMAELLARTNLDQRQAMFVDVIVKSGTALLTIINDILDFSK 348
Query: 498 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 557
+++G+L+L+ F L ++DV +L S + +K +EL V + +P + IGD GRFRQ+
Sbjct: 349 IDAGQLKLDTAPFKLGEAIEDVAALVSTRVAEKDLELIVRVDPDLPLSFIGDVGRFRQVA 408
Query: 558 TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 617
TNL+GN++KFTE+GH+ + V SG
Sbjct: 409 TNLVGNAVKFTERGHVLIDV-----------------------SGTV------------- 432
Query: 618 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 677
+DGS + +SVEDTG GIP + +F F QV S +R H GTG+G
Sbjct: 433 --RDGSAL-----------VTISVEDTGIGIPQDKLDVVFEKFAQVDSSSTRRHEGTGLG 479
Query: 678 LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 737
L+I+ LV M G + S GSTF FT N P + +
Sbjct: 480 LAIASRLVELMGGSMQAKSEIGKGSTFAFTIPL----------EVDHANCTPKTAPIDVS 529
Query: 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEK 797
G + V+D PI ++ ++ G +C A+ S + + +E+ V +
Sbjct: 530 GSRVFVIDDNPINREILLEQLKSWG---------FEC---AAAESGAVGLAFLERSV-QL 576
Query: 798 DTSVSTLFVNNLRKLGCGFQSKLFLLANSISS----------SRANTSTDGV--SIPSVI 845
D V + ++ G + AN ++ +A+TS + I + +
Sbjct: 577 DARVDCVILDYQMPDMNGADVAKRIKANPATADIPLVLLTSVDQADTSRLAMECGIAAQL 636
Query: 846 MKPLRSSMLAASLQRAMGVGNKGNIRNWELP------------------SMSLRHLLLGR 887
KP RSS L ++ M G+ P S S G
Sbjct: 637 NKPTRSSALLETIVSVMQAARAGSDMPAPQPIQLRPAQTRLSNAVERGLSSSRSQRGEGL 696
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
+L+ +DN VN V + L G GK A E + + MD+ MPEM+GY
Sbjct: 697 DVLVAEDNEVNQLVFSQVLDGLGLRYRIAGNGKTAVE-MHRAFRPKIMLMDVSMPEMNGY 755
Query: 948 E 948
E
Sbjct: 756 E 756
Score = 40.4 bits (93), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 802 STLFVNNLRKLGCGF-QSKL------FLLANSISSSRANTSTDGVSIPSVIMKPLRSSML 854
S L ++ G G Q KL F +S S+ R + G++I S +++ ++
Sbjct: 436 SALVTISVEDTGIGIPQDKLDVVFEKFAQVDSSSTRRHEGTGLGLAIASRLVE-----LM 490
Query: 855 AASLQRAMGVGNKGNIRNWELPSMSLRHL----------LLGRKILIVDDNNVNLKVAAA 904
S+Q +G KG+ + +P + + H + G ++ ++DDN +N ++
Sbjct: 491 GGSMQAKSEIG-KGSTFAFTIP-LEVDHANCTPKTAPIDVSGSRVFVIDDNPINREILLE 548
Query: 905 GLKRYGAAVVCVERGKKATELLMPPHQFDA----CFMDIQMPEMDGYEM 949
LK +G E G L Q DA +D QMP+M+G ++
Sbjct: 549 QLKSWGFECAAAESGAVGLAFLERSVQLDARVDCVILDYQMPDMNGADV 597
>gi|440679909|ref|YP_007154704.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428677028|gb|AFZ55794.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 1543
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 167/539 (30%), Positives = 255/539 (47%), Gaps = 84/539 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+ +AE A +AKS FLA +SHEIRTPMN VLGM +L++T L+ QQD+V T + SG AL+
Sbjct: 874 RHQAELASLAKSAFLANMSHEIRTPMNAVLGMTGLLLETALNREQQDFVETIRISGDALL 933
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
SLINE+LD +K+E+G++ELE + F+L + +++VL L + ++ KG+E+ I +VP L
Sbjct: 934 SLINEILDLSKLEAGEMELEHLDFDLSSCIEEVLDLLAPQAHHKGLEIGALIRRKVPIQL 993
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD R RQI+ NL+GN+IKFT +G + V V L+ E
Sbjct: 994 QGDASRLRQILMNLIGNAIKFTSEGEVVVQVELLSET----------------------- 1030
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+T+ K S+ DTG GI E Q ++F F QV S
Sbjct: 1031 ---------------ATTATIK----------FSITDTGIGITSEDQHKLFQAFSQVDAS 1065
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R +GGTG+GL+I + LV M GEIG S GS F F F Q
Sbjct: 1066 ITRQYGGTGLGLAICRQLVNLMGGEIGVTSEIGQGSKFCFDLSF----------TKQLYF 1115
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSK 783
P + LVVD K+ + R G+QV+ ++ Q L A+ K
Sbjct: 1116 ACPVKEPEILTNRRLLVVDDNDTNRKIVYHQATRWGMQVDEAANAQVAFQALQAAAAAGK 1175
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
++ LV+ ++ +V L + K ++ S + +
Sbjct: 1176 PYDIALVDMQM----PTVDGLTLGVQIKANDAIAHVPLIMLTSTNQRDEVQKALKIGFAG 1231
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL----PSMSLRHLLLGR--------KILI 891
++KP++ S L ++ + K N+ + ++ ++SL ++L+
Sbjct: 1232 YLVKPVKPSRLFDTIMNILVA--KSNLNDHQISLISETLSLDQQFTQTTSFTKTNIRVLL 1289
Query: 892 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGYE 948
+DN VN KVA L+ G V G++ LL +P +D MD QMP +DG +
Sbjct: 1290 AEDNLVNQKVALKQLQTLGYIADTVSNGEEVLHLLETVP---YDLILMDCQMPVLDGLQ 1345
>gi|229527059|ref|ZP_04416454.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)]
gi|229335456|gb|EEO00938.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)]
Length = 927
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 176/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 666
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 723
>gi|146294229|ref|YP_001184653.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
gi|145565919|gb|ABP76854.1| PAS/PAC sensor hybrid histidine kinase [Shewanella putrefaciens
CN-32]
Length = 1771
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 157/523 (30%), Positives = 254/523 (48%), Gaps = 69/523 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++A+AA AK FLA +SHEIRTPMN ++GM + + T LD Q++YV + + ++L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTALDKKQKNYVEKIERASQSLL 1089
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+GKL+++AV F L +L+D+ +FS K K +EL ++ VP L
Sbjct: 1090 SIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAVAPNVPRHL 1149
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD R Q++ NLM N+IKFTE+G + +++ LVE+ D + + + SG +
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQNDDVTLRFSVRD-----SGIGLT 1204
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D + K FK+F+Q DT S
Sbjct: 1205 DEQQA-KLFKSFSQ---------------------ADT---------------------S 1221
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I K LV M G IG S GSTF FT Q +
Sbjct: 1222 TTRKYGGTGLGLAICKQLVELMGGNIGVESQFGHGSTFYFTVKL------------QISS 1269
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
Q +V E +GM LVVD + R ++ +G V+ V + +S+ +
Sbjct: 1270 GQKLTVGQELEGMSVLVVDDNATARDIMRTALESMGFNVDTVRTGEEAVSRCIQHEYAVA 1329
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+I W+ + +++ + L+ ++ ++ T + + + I
Sbjct: 1330 LI-----DWKMPSMDGLEAARQIQQQAKA--APRILMVSAHANHEFLTQIEQLGLAGYIS 1382
Query: 847 KPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905
KP+ +S L + A+G +R E L L G+++L+V+DN +NL+VA
Sbjct: 1383 KPISASRLLDGIMNALGRAGILPVRRHNEALDPQLLLPLKGKRVLLVEDNEMNLEVATEF 1442
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L++ G + G+ A + L +D MD QMP MDGY+
Sbjct: 1443 LEQVGIILSIATNGQIALDKL-SQQSYDLVLMDCQMPVMDGYQ 1484
>gi|429094957|ref|ZP_19157463.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
dublinensis 1210]
gi|426739907|emb|CCJ83576.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
dublinensis 1210]
Length = 919
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 167/527 (31%), Positives = 260/527 (49%), Gaps = 90/527 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL V + VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRNTLDEVVTLLAHSAHDKGLELTVSVRHDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFT+ G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S P+ GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ + GM+ V+ AK +R + + V V S +L L Q
Sbjct: 522 --PNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLDNTPLTV-VYSPELATLPQAH-- 576
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
+++L V +++ T+ + L + + L + +G S
Sbjct: 577 ---YDILLYAAPVTDREP--LTMRHDQLARAATLTDCLILALPCHAQINAEMLKKEGAS- 630
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KP+ ++ L L + + I ELP S L + ++ VDDN NLK+
Sbjct: 631 -ACLLKPVTATRLLPLL-----LEHCRQIHARELPEGSQGKLAM--TVMAVDDNPANLKL 682
Query: 902 AAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDG 946
A L+ VV + G +A E L P FD MDIQMP+MDG
Sbjct: 683 IGALLEDIVQHVVLCDSGHQAVERATLQP---FDIILMDIQMPDMDG 726
>gi|238797166|ref|ZP_04640668.1| Signal transduction histidine-protein kinase barA [Yersinia
mollaretii ATCC 43969]
gi|238719013|gb|EEQ10827.1| Signal transduction histidine-protein kinase barA [Yersinia
mollaretii ATCC 43969]
Length = 915
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 161/530 (30%), Positives = 243/530 (45%), Gaps = 97/530 (18%)
Query: 428 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 487
K+A+ A KS+FLA +SHE+RTP+NGV+G + T L TQ DY++T Q S L+
Sbjct: 274 KRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLTPTQTDYLQTIQRSANNLLC 333
Query: 488 LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 547
+IN+VLD +K+E+ KL LE + F LR LD+V+ L + + +KG+EL ++I++ VPE ++
Sbjct: 334 IINDVLDFSKLEAEKLILEHIPFPLRGALDEVVILLAHTAHEKGLELTLHINNDVPEQVV 393
Query: 548 GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 607
GD R +QI+TNL+GN+IKFTE+G+I + V +
Sbjct: 394 GDAMRLQQIVTNLLGNAIKFTEQGNIDILVAV---------------------------- 425
Query: 608 RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667
++ +A + L+V + DTG GI Q+++F F Q SI
Sbjct: 426 --------------------QALTAQRVTLVVEIHDTGIGISESQQAQLFQAFRQADASI 465
Query: 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ---- 723
SR HGGTG+GL I++ LV M G+I F+S + GSTF F S S
Sbjct: 466 SRRHGGTGLGLVITERLVKEMGGDISFLSQVDRGSTFRFHLTLDLNESLSYRQPDMSYLE 525
Query: 724 -------QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS 776
+ N + + + L++ P A + H L + V + +
Sbjct: 526 GKTLAYIERNASAARAALDILSITPLLITHSPTLALLPAQHYDFLLVGVPIPFRNNMAVH 585
Query: 777 QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTST 836
Q K++ + + + V S S + L++LG
Sbjct: 586 Q----DKLVAAMKISERVILALPSQSQVEAEQLKQLGAK--------------------- 620
Query: 837 DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 896
+ ++KPL S+ L +L +G E P L L K++ VDDN
Sbjct: 621 ------ACLIKPLSSNRLIPTLLSEEPLGVSLVEEQAEKP------LKLPFKVMAVDDNP 668
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ L+ A V + G KA H D MDIQMPE+DG
Sbjct: 669 ANLKLIGTLLEEQVAETVLCDSGAKAIAYAR-EHTLDIILMDIQMPEIDG 717
>gi|117926235|ref|YP_866852.1| Hpt sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117609991|gb|ABK45446.1| Hpt sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 764
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 140/442 (31%), Positives = 242/442 (54%), Gaps = 55/442 (12%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+VE + K+ AE A++AK++FLAT+SHEIRTP+NGVLGM D+L++++L+ Q+ +
Sbjct: 216 RVERRTRELRLAKEAAEQANLAKTEFLATMSHEIRTPLNGVLGMSDLLLESDLNSYQRHH 275
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
V T SG+ L+ +IN++LD +++++G++ LE +F LRA L+DV +LF +++ KG+
Sbjct: 276 VETIHRSGRTLLRVINDILDLSRIQAGRMPLEVTAFKLRACLEDVQALFKDQARRKGLSF 335
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
++ + +P+ L+GD R QI+ NL+GN++KFTE+G + V+V E+V +
Sbjct: 336 SINCQEELPQRLLGDATRLNQILFNLVGNALKFTERGFVRVSVQ-AEQVRE--------- 385
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
ADL+ L + VED+G GI E ++
Sbjct: 386 -------------------------------------ADLL-LRIQVEDSGIGISDEYKN 407
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
R+F F Q SISR +GG+G+GL I++ L M G++GF S GSTF TA FG
Sbjct: 408 RLFEIFSQQDSSISRRYGGSGLGLVITRKLAQIMGGKLGFSSRSGAGSTFWVTARFGRVP 467
Query: 715 STSNEHN-SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
T +H + Q N ++ F+ L+ + P+ V+R +++RLG +V +V + Q
Sbjct: 468 DTLPDHPLLPREEQQSNLLNQRFRA-HILLAEDNPVNQDVARLNLERLGCRVTLVENGQQ 526
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNL-RKLGCGFQSKLFLLANSISSSRA 832
++ +++L++ E+ D +T + +L R+ G + + A++++S R
Sbjct: 527 AVTVFQENR--FDLVLMDCEMPIMDGYTATRTIRDLERQQGRRATPIIAVTAHALASHRN 584
Query: 833 NTSTDGVSIPSVIMKPLRSSML 854
G++ + KP ++ L
Sbjct: 585 KAIATGMN--DFLSKPFSTTKL 604
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
IL+ +DN VN VA L+R G V VE G++A + ++FD MD +MP MDGY
Sbjct: 494 ILLAEDNPVNQDVARLNLERLGCRVTLVENGQQAVTVFQ-ENRFDLVLMDCEMPIMDGY 551
>gi|421355136|ref|ZP_15805468.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE-45]
gi|395954261|gb|EJH64874.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE-45]
Length = 916
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 176/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 198 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 257
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 258 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 317
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 318 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 377
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 378 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 422
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 423 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 449
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 509
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 510 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 558
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 559 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 610
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 611 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLTNTSLPKPQADKLPLC- 655
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 656 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 712
>gi|28899341|ref|NP_798946.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus RIMD
2210633]
gi|260878968|ref|ZP_05891323.1| signal transduction histidine-protein kinase BarA [Vibrio
parahaemolyticus AN-5034]
gi|260898315|ref|ZP_05906811.1| signal transduction histidine-protein kinase BarA [Vibrio
parahaemolyticus Peru-466]
gi|28807577|dbj|BAC60830.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
RIMD 2210633]
gi|308085236|gb|EFO34931.1| signal transduction histidine-protein kinase BarA [Vibrio
parahaemolyticus Peru-466]
gi|308090507|gb|EFO40202.1| signal transduction histidine-protein kinase BarA [Vibrio
parahaemolyticus AN-5034]
Length = 932
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 181/618 (29%), Positives = 291/618 (47%), Gaps = 98/618 (15%)
Query: 346 SMYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH 404
S++ S + D ++ + N D R+ + R + K L + I + ++ H
Sbjct: 190 SVFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYH 249
Query: 405 ------IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGV 455
I QAT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV
Sbjct: 250 VEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGV 309
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
+G ++ T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F+ R
Sbjct: 310 IGFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRES 369
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
L++V++L + + +KG+E+ + + ++P L+GDP R +QI+TNL+GNSIKFTE+G+I V
Sbjct: 370 LEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDV 429
Query: 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 635
+V + + DS+E++
Sbjct: 430 SVEMRSQAGDSVELQ--------------------------------------------- 444
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
V DTG GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI
Sbjct: 445 ---FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLT 501
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAK 752
S + GSTF FT NS +M P S E + G + L+V+P A
Sbjct: 502 SRLHQGSTFWFTLRL----------NSTEM---PMSDLIEVELLTGKQLLLVEPNMQAAS 548
Query: 753 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 812
V++ + + GI V S L + + + L + +++ + + ++ +++
Sbjct: 549 VTQQILSQEGILVTYRS----SLPENEEHYDYVLLNLAANQTYDEQSVAA--WIEQAKRM 602
Query: 813 G----CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG 868
G S LA+ I + + KPL L SL +
Sbjct: 603 APSVIMGTPSTELALADQIMTEHQ---------IQCLTKPLSRRKLLQSLINEHVEAPQA 653
Query: 869 NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 928
P + L +L VDDN NLK+ +A LK V G++A L
Sbjct: 654 ----ITAPVETEESERLPLTVLAVDDNPANLKLISALLKERVETVTACSNGQQAVN-LAT 708
Query: 929 PHQFDACFMDIQMPEMDG 946
++D FMDIQMP MDG
Sbjct: 709 EKKYDLIFMDIQMPLMDG 726
>gi|421352157|ref|ZP_15802522.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE-25]
gi|395952602|gb|EJH63216.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE-25]
Length = 916
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 176/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 198 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 257
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 258 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 317
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 318 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 377
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 378 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 422
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 423 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 449
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 509
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 510 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 558
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 559 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 610
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 611 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 655
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 656 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 712
>gi|50122492|ref|YP_051659.1| hybrid sensory histidine kinase BarA [Pectobacterium atrosepticum
SCRI1043]
gi|49613018|emb|CAG76469.1| two-component sensor kinase and response regulator [Pectobacterium
atrosepticum SCRI1043]
Length = 933
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 170/529 (32%), Positives = 252/529 (47%), Gaps = 86/529 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T L+ TQ DY+ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLNTTQTDYLLTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE + F+L + LDDV+ L + + +KG+EL + I + VPE
Sbjct: 343 NIINDVLDFSKLEAGKLVLEDIPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R +QIITNL+GN+IKFTE+G+I + V + +++E
Sbjct: 403 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQEHHQVQLE---------------- 446
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
V + DTG GI QS++F F Q S
Sbjct: 447 --------------------------------VQIRDTGIGIAELQQSQLFQAFRQADTS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S N GSTF F N M
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITL--------PLNPHAMP 526
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+P + QG V+ PI A+ + + + + V Q+ G +
Sbjct: 527 TEP--AYTMLQGKHLAYVEYHPIAAQATLDILSQTPLMVSYSP----TFEQLPEGD--FD 578
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT-STDGVSIPSVI 845
++L+ V ++ + + LR + C + L S++ A T GV + +
Sbjct: 579 ILLLGIPVQYRNMLLD--YTPRLRDI-CRRAPCVILALPSLAQMDAEQLKTFGVH--ACL 633
Query: 846 MKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR-------KILIVDDNNVN 898
KPL +S L LQ + + LP + H + R ++ VDDN N
Sbjct: 634 SKPLAASRLLPLLQ------DSTLFQLSFLPDATTSHQSVVRHPARLPLSVMAVDDNPAN 687
Query: 899 LKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFMDIQMPEMDG 946
LK+ L+ ++ E G A ++ M HQ D MDIQMP MDG
Sbjct: 688 LKLIGTLLEEQVDTIILCESGTDAISQAKM--HQIDIILMDIQMPGMDG 734
>gi|23014385|ref|ZP_00054204.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 1193
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 169/545 (31%), Positives = 253/545 (46%), Gaps = 104/545 (19%)
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489
AE A AKS FLAT+SHEIRTPMNGVL M +L D L Q++ R + S +L+++I
Sbjct: 523 AEEASQAKSLFLATMSHEIRTPMNGVLTMAQLLEDMPLPAEQREMARVIRDSATSLLTII 582
Query: 490 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 549
N++LD +K+E+ KL+LE V +L +++ V L + ++Q+KG+ L +I + + +IGD
Sbjct: 583 NDILDFSKIEADKLQLELVELSLSELVEGVADLLTIRAQEKGISLITFIDPALTDMVIGD 642
Query: 550 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 609
P R RQIITNL GN+IKFT+KG++ ++V ++ + +E
Sbjct: 643 PIRLRQIITNLAGNAIKFTDKGYVRISVRALDPRERPLRLE------------------- 683
Query: 610 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669
FN + DTG G+ E Q+R+F PFMQ +ISR
Sbjct: 684 --------FN---------------------ITDTGIGLDSEQQARLFEPFMQADVTISR 714
Query: 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 729
+GGTG+GLSI + LV M GEIG S GSTF F Q+ +P
Sbjct: 715 RYGGTGLGLSICRRLVAMMDGEIGVRSNMGQGSTFWF-----------------QVPLEP 757
Query: 730 NSVSSE----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII 785
V+ E G+ LV+ P+ A+ R ++ LG QV VV + + +
Sbjct: 758 ADVAPEETPDLSGIAVLVLAEGPVAAECLRQYLGHLGAQVAVV---------VGAEGAVA 808
Query: 786 NMILVEQEVWEKDTSVSTLFVNNLRKLGCG----------FQSKLFLLANSISSSRANTS 835
+ W D ++ + +LG + K+ LL + + +
Sbjct: 809 AVRAAALAGWTYDVALLDDGQDFRMRLGVAGALMTAAGPDLELKVALLVAKEAFAAVASE 868
Query: 836 TDGVSIPSVIMKPLRSSML----AASLQRAM-------GVGNKGNIRNWELPSMSLRHLL 884
+ + + KP+R L A ++ RAM GVG + W P+
Sbjct: 869 IKAAGLYAALPKPIRRRQLWRNVAVAVGRAMPEAESADGVGAE---EGWRPPTTE-EAAA 924
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
G IL+ +DN N V ++R G A+ V G +A E M + D MPEM
Sbjct: 925 AGALILVAEDNPTNKVVIRHLMERLGYAIEVVGNGAEAWE-RMQIRDYGLLLTDCHMPEM 983
Query: 945 DGYEM 949
DGYE+
Sbjct: 984 DGYEL 988
>gi|417318936|ref|ZP_12105494.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus
10329]
gi|328474126|gb|EGF44931.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus
10329]
Length = 932
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 181/618 (29%), Positives = 291/618 (47%), Gaps = 98/618 (15%)
Query: 346 SMYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH 404
S++ S + D ++ + N D R+ + R + K L + I + ++ H
Sbjct: 190 SVFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYH 249
Query: 405 ------IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGV 455
I QAT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV
Sbjct: 250 VEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGV 309
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
+G ++ T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F+ R
Sbjct: 310 IGFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRES 369
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
L++V++L + + +KG+E+ + + ++P L+GDP R +QI+TNL+GNSIKFTE+G+I V
Sbjct: 370 LEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDV 429
Query: 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 635
+V + + DS+E++
Sbjct: 430 SVEMRSQAGDSVELQ--------------------------------------------- 444
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
V DTG GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI
Sbjct: 445 ---FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLT 501
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAK 752
S + GSTF FT NS +M P S E + G + L+V+P A
Sbjct: 502 SRLHQGSTFWFTLRL----------NSTEM---PMSDLIEVELLTGKQLLLVEPNMQAAS 548
Query: 753 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 812
V++ + + GI V S L + + + L + +++ + + ++ +++
Sbjct: 549 VTQQILSQEGILVTYRS----SLPENEEHYDYVLLNLAANQTYDEQSVAA--WIEQAKRM 602
Query: 813 G----CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG 868
G S LA+ I + + KPL L SL +
Sbjct: 603 APSVIMGTPSTELALADQIMTEHQ---------IQCLTKPLSRRKLLQSLINEHVEAPQA 653
Query: 869 NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 928
P + L +L VDDN NLK+ +A LK V G++A L
Sbjct: 654 ----ITAPVETEESERLPLTVLAVDDNPANLKLISALLKERVETVTACSNGQQAVN-LAT 708
Query: 929 PHQFDACFMDIQMPEMDG 946
++D FMDIQMP MDG
Sbjct: 709 EKKYDLIFMDIQMPLMDG 726
>gi|260365946|ref|ZP_05778436.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
gi|308113209|gb|EFO50749.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
Length = 742
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 181/617 (29%), Positives = 290/617 (47%), Gaps = 98/617 (15%)
Query: 347 MYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH- 404
M+ S + D ++ + N D R+ + R + K L + I + ++ H
Sbjct: 1 MFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYHV 60
Query: 405 -----IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVL 456
I QAT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+
Sbjct: 61 EMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVI 120
Query: 457 GMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAIL 516
G ++ T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F+ R L
Sbjct: 121 GFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESL 180
Query: 517 DDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVT 576
++V++L + + +KG+E+ + + ++P L+GDP R +QI+TNL+GNSIKFTE+G+I V+
Sbjct: 181 EEVINLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDVS 240
Query: 577 VYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLIN 636
V + + DS+E++
Sbjct: 241 VEMRSQAGDSVELQ---------------------------------------------- 254
Query: 637 LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS 696
V DTG GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI S
Sbjct: 255 --FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTS 312
Query: 697 IPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAKV 753
+ GSTF FT NS +M P S E + G + L+V+P A V
Sbjct: 313 RLHQGSTFWFTLRL----------NSTEM---PMSDLIEVELLTGKQLLLVEPNMQAASV 359
Query: 754 SRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 813
++ + + GI V S L + + + L + +++ + + ++ +++
Sbjct: 360 TQQILSQEGILVTYRS----SLPENEEHYDYVLLNLAANQTYDEQSVAA--WIEQAKRMA 413
Query: 814 ----CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGN 869
G S LA+ I + + KPL L SL +
Sbjct: 414 PSVIMGTPSTELALADQIMTEHQ---------IQCLTKPLSRRKLLQSLINEHVEAPQA- 463
Query: 870 IRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 929
P + L +L VDDN NLK+ +A LK V G++A L
Sbjct: 464 ---ITAPVETEESERLPLTVLAVDDNPANLKLISALLKERVETVTACSNGQQAVN-LATE 519
Query: 930 HQFDACFMDIQMPEMDG 946
++D FMDIQMP MDG
Sbjct: 520 KKYDLIFMDIQMPLMDG 536
>gi|262167284|ref|ZP_06034994.1| BarA sensory histidine kinase [Vibrio cholerae RC27]
gi|419838143|ref|ZP_14361581.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-46B1]
gi|421343854|ref|ZP_15794257.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-43B1]
gi|423736105|ref|ZP_17709295.1| his Kinase A domain protein [Vibrio cholerae HC-41B1]
gi|429886893|ref|ZP_19368431.1| BarA sensory histidine kinase (VarS, GacS) [Vibrio cholerae PS15]
gi|262024259|gb|EEY42950.1| BarA sensory histidine kinase [Vibrio cholerae RC27]
gi|395939934|gb|EJH50615.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-43B1]
gi|408629077|gb|EKL01790.1| his Kinase A domain protein [Vibrio cholerae HC-41B1]
gi|408856691|gb|EKL96386.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HC-46B1]
gi|429226205|gb|EKY32345.1| BarA sensory histidine kinase (VarS, GacS) [Vibrio cholerae PS15]
Length = 916
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 176/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 198 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 257
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 258 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 317
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 318 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 377
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 378 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 422
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 423 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 449
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 509
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 510 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 558
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 559 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 610
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 611 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 655
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 656 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 712
>gi|153839829|ref|ZP_01992496.1| signal transduction histidine-protein kinase BarA [Vibrio
parahaemolyticus AQ3810]
gi|149746646|gb|EDM57634.1| signal transduction histidine-protein kinase BarA [Vibrio
parahaemolyticus AQ3810]
Length = 932
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 181/618 (29%), Positives = 291/618 (47%), Gaps = 98/618 (15%)
Query: 346 SMYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH 404
S++ S + D ++ + N D R+ + R + K L + I + ++ H
Sbjct: 190 SVFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYH 249
Query: 405 ------IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGV 455
I QAT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV
Sbjct: 250 VEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGV 309
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
+G ++ T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F+ R
Sbjct: 310 IGFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRES 369
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
L++V++L + + +KG+E+ + + ++P L+GDP R +QI+TNL+GNSIKFTE+G+I V
Sbjct: 370 LEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDV 429
Query: 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 635
+V + + DS+E++
Sbjct: 430 SVEMRSQAGDSVELQ--------------------------------------------- 444
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
V DTG GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI
Sbjct: 445 ---FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLT 501
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAK 752
S + GSTF FT NS +M P S E + G + L+V+P A
Sbjct: 502 SRLHQGSTFWFTLRL----------NSTEM---PMSDLIEVELLTGKQLLLVEPNMQAAS 548
Query: 753 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 812
V++ + + GI V S L + + + L + +++ + + ++ +++
Sbjct: 549 VTQQILSQEGILVTYRS----SLPENEEHYDYVLLNLAANQTYDEQSVAA--WIEQAKRM 602
Query: 813 G----CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG 868
G S LA+ I + + KPL L SL +
Sbjct: 603 APSVIMGTPSTELALADQIMTEHQ---------IQCLTKPLSRRKLLQSLINEHVEAPQA 653
Query: 869 NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 928
P + L +L VDDN NLK+ +A LK V G++A L
Sbjct: 654 ----IAAPVETEESERLPLTVLAVDDNPANLKLISALLKERVETVTACSNGQQAVN-LAT 708
Query: 929 PHQFDACFMDIQMPEMDG 946
++D FMDIQMP MDG
Sbjct: 709 EKKYDLIFMDIQMPLMDG 726
>gi|350532413|ref|ZP_08911354.1| hybrid sensory histidine kinase BarA [Vibrio rotiferianus DAT722]
Length = 932
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 182/633 (28%), Positives = 294/633 (46%), Gaps = 128/633 (20%)
Query: 346 SMYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH 404
S++ S + D ++ + N D R+ + R + K L + I + ++ H
Sbjct: 190 SVFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYH 249
Query: 405 ------IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGV 455
I QAT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV
Sbjct: 250 VEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGV 309
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
+G ++ T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F R
Sbjct: 310 IGFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRES 369
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
L++V++L + + +KG+E+ + + ++P+ L+GDP R +QI+TNL+GNSIKFTE+G+I +
Sbjct: 370 LEEVINLQATSAHEKGLEITLKVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDI 429
Query: 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 635
+V + + DS+E++
Sbjct: 430 SVEMRSQSGDSVELQ--------------------------------------------- 444
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
V DTG GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI
Sbjct: 445 ---FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLT 501
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAK 752
S + GSTF FT SST P S E + G + L+V+P A
Sbjct: 502 SRLHQGSTFWFTLRL---SSTE----------MPMSDLIEVELLTGKQLLLVEPNMQAAS 548
Query: 753 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 812
V++ + + GI V S L + + + L + ++ + SV+T ++ +++
Sbjct: 549 VTQQILSQEGILVTYRS----SLPENDENYDYVLLNLAANQTYD-EQSVAT-WIEQAKRM 602
Query: 813 G----CGFQSKLFLLANSISSSR---------------ANTSTDGVSIPSVIMKPLRSSM 853
G S LA+ + + + TD V P ++ P+
Sbjct: 603 APSVIMGTPSTELALADQVMNDHQIQCLTKPLSRRKLLQSLITDHVETPQAVIAPIEP-- 660
Query: 854 LAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAV 913
+ N LP +L VDDN NLK+ +A LK V
Sbjct: 661 ----------------VENERLP----------LTVLAVDDNPANLKLISALLKERVETV 694
Query: 914 VCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
G++A L ++D FMDIQMP MDG
Sbjct: 695 TACSNGQQAVN-LATEKKYDLIFMDIQMPLMDG 726
>gi|424039479|ref|ZP_17777845.1| signal transduction histidine-protein kinase BarA, partial [Vibrio
cholerae HENC-02]
gi|408892939|gb|EKM30284.1| signal transduction histidine-protein kinase BarA, partial [Vibrio
cholerae HENC-02]
Length = 931
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 184/618 (29%), Positives = 296/618 (47%), Gaps = 98/618 (15%)
Query: 346 SMYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH 404
S++ S + D ++ + N D R+ + R + K L + I + ++ H
Sbjct: 189 SVFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYH 248
Query: 405 ------IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGV 455
I QAT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV
Sbjct: 249 VEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGV 308
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
+G ++ T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F R
Sbjct: 309 IGFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRES 368
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
L++V++L + + +KG+E+ + + ++P+ L+GDP R +QI+TNL+GNSIKFTE+G+I +
Sbjct: 369 LEEVINLQATSAHEKGLEITLKVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDI 428
Query: 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 635
+V + + DS+E++
Sbjct: 429 SVEMRSQSGDSVELQ--------------------------------------------- 443
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
V DTG GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI
Sbjct: 444 ---FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLT 500
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAK 752
S + GSTF FT +S +M P S E + G + L+V+P A
Sbjct: 501 SRLHQGSTFWFTVRL----------HSTEM---PMSDLIEVELLTGKQLLLVEPNMQAAS 547
Query: 753 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 812
V++ + + GI V S L + + + L + ++ D SV+ ++ +++
Sbjct: 548 VTQQILSQEGILVTYRS----SLPENDENYDYVLLNLAANQTYD-DQSVAA-WIEQAKRM 601
Query: 813 G----CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG 868
G S LA+ + + + KPL L SL +
Sbjct: 602 APSVIMGTPSTELALADQVMNDHQ---------IQCLTKPLSRRKLLQSLITDHVETPQA 652
Query: 869 NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 928
I E P ++ R L +L VDDN NLK+ +A LK V G++A L
Sbjct: 653 VIAPIE-PVVNER---LPLTVLAVDDNPANLKLISALLKERVETVTACSNGQQAVN-LAT 707
Query: 929 PHQFDACFMDIQMPEMDG 946
++D FMDIQMP MDG
Sbjct: 708 EKKYDLIFMDIQMPLMDG 725
>gi|373487149|ref|ZP_09577818.1| PAS sensor protein [Holophaga foetida DSM 6591]
gi|372010031|gb|EHP10644.1| PAS sensor protein [Holophaga foetida DSM 6591]
Length = 1464
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 165/537 (30%), Positives = 259/537 (48%), Gaps = 84/537 (15%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
M E K+ AE A AK+ FLA +SHEIRTPMN ++GM + + TEL+ Q+DYV+ Q SG
Sbjct: 727 MQEAKEIAEGASQAKADFLANMSHEIRTPMNAIIGMAHLALKTELNPRQKDYVKKIQQSG 786
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
+ L+ +IN++LD +K+E+GKL +E +L ++++V +L + K+ KG+EL + V
Sbjct: 787 QHLLGIINDILDFSKIEAGKLSVELTEVHLDKVMENVSNLITEKATAKGLELVFDVGPGV 846
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P L+GDP R QI+ N N++KFTE+G I + LVE++
Sbjct: 847 PNDLMGDPLRLGQILINYANNAVKFTEQGEIDIRTRLVEDL------------------- 887
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
G + F L V DTG G+ E + R+F F Q
Sbjct: 888 -----------GSEVF------------------LRFEVRDTGIGLTEEQKGRLFQSFQQ 918
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
S +R +GGTG+GL+ISK L M G +G S+P GSTF FTA G G
Sbjct: 919 ADSSTTRKYGGTGLGLAISKKLAVLMGGNVGVDSLPGQGSTFWFTARLGKGKP------R 972
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS 782
+ + +P+ +G + LVVD + +R+ + V+++ ++++ASG+
Sbjct: 973 RALVPRPD-----LRGKRMLVVDDN----ENARH------VLVDILISMSFQVNEVASGA 1017
Query: 783 KIINMILVEQ------EV----WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 832
+ + I EV W+ ++++ LG +L ++ +
Sbjct: 1018 EALAAIRRAAASGQPYEVVFLDWQMPRMDGLEAAHHIKALGLDTAPRLIMV-TAYGREEV 1076
Query: 833 NTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV---GNKGNIRNWELPSMSLRHLLLGRKI 889
+ V + V++KP+ SML S+ R +G + LP+ L G K+
Sbjct: 1077 LKGAETVGVEDVLIKPVSPSMLFDSIMRVLGAVLEEGEAGEGEGPLPTDEAVLQLRGLKV 1136
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
L+V+DN+ N +VA L G V E G + E + +D MD+QMP MDG
Sbjct: 1137 LLVEDNDFNQQVATELLADAGIKVDVAENGLISLEKVR-TGTYDLVLMDMQMPVMDG 1192
>gi|421337156|ref|ZP_15787617.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1048(21)]
gi|395932255|gb|EJH42999.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
CP1048(21)]
Length = 912
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 176/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 194 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 253
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 254 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 313
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 314 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 373
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 374 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 418
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 419 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 445
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 446 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 505
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 506 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 554
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 555 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 606
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 607 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 651
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 652 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 708
>gi|170738563|ref|YP_001767218.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
gi|168192837|gb|ACA14784.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
Length = 708
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 178/586 (30%), Positives = 276/586 (47%), Gaps = 94/586 (16%)
Query: 387 LAISTSIG------ILVIASLVGHIFQATVNR----IAKVEEDYHGMMELKKKAEAADVA 436
LAI+ + G +V +++VG + V R I + E + E + +AEAA VA
Sbjct: 146 LAIAPAAGGPPRWFAVVESAVVGRDGRPEVLRAGREITERVEAVRSLDEARSRAEAASVA 205
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KS+FLATVSHE RTP+NG+LGM D++++T L Q+ Y+R + SG+AL++LI+ +LD +
Sbjct: 206 KSRFLATVSHEFRTPLNGILGMADLVLETPLSPEQETYIRAIKTSGEALLTLIDGILDFS 265
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+G+L+L F+ A+++ V+ L + ++QDKG+E+A ++D +P ++GD R RQI
Sbjct: 266 KIEAGRLDLACEPFDPAALVESVVELLAPRAQDKGLEIAADLADDLPPRVLGDGDRVRQI 325
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+ NL GN++KFTE G + +T V E
Sbjct: 326 LLNLAGNAVKFTEAGGVGITAERVGE---------------------------------- 351
Query: 617 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
+L+++V DTG GIP E +F F Q S SR H GTG+
Sbjct: 352 -------------------DLVLAVHDTGPGIPEERLPLLFEEFEQGDGSASRRHEGTGL 392
Query: 677 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 736
GL+I++ LV RM G I S P GS F + E +P +++
Sbjct: 393 GLAITRRLVDRMGGRIETTSRPGAGSCFRVVLPL---RALDGER------PRPPALT--- 440
Query: 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE 796
G + LV + R + R G EVVS + ++ A ++ + +L ++ +
Sbjct: 441 -GRRILVAAASAVEGPFLRARLTRSG--AEVVSADGEAAAREALRARPFDAVLADRALG- 496
Query: 797 KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAA 856
D +V + R G + LL S R S ++KP+R+ L A
Sbjct: 497 -DEAVRRIAGAAKR---AGVPRSIVLL--SPFDRRDFGSPAAAGFDRYLIKPVRARSLYA 550
Query: 857 SLQRAMGVGNKGNIRNWELPSMSLRHLLLGR-KILIVDDNNVNLKVAAAGLKRYGAAVVC 915
L A G +R E R GR ++L+ +DN +N +A L+R AAV
Sbjct: 551 RLCEAT-RPQGGELR--EGAPAERRGPPPGRARVLLAEDNPINALLARKALERLDAAVTW 607
Query: 916 VERGKKATELL-----MPPHQFDACFMDIQMPEMDGYEMLPCFESF 956
V G +A L FD +DI+MP +DG E +F
Sbjct: 608 VPDGAEALRHLEAAAAGAAEGFDLALLDIRMPGLDGLEAARRLRAF 653
>gi|433658642|ref|YP_007276021.1| BarA sensory histidine kinase [Vibrio parahaemolyticus BB22OP]
gi|432509330|gb|AGB10847.1| BarA sensory histidine kinase [Vibrio parahaemolyticus BB22OP]
Length = 932
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 181/618 (29%), Positives = 291/618 (47%), Gaps = 98/618 (15%)
Query: 346 SMYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH 404
S++ S + D ++ + N D R+ + R + K L + I + ++ H
Sbjct: 190 SVFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYH 249
Query: 405 ------IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGV 455
I QAT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV
Sbjct: 250 VEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGV 309
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
+G ++ T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F+ R
Sbjct: 310 IGFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRES 369
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
L++V++L + + +KG+E+ + + ++P L+GDP R +QI+TNL+GNSIKFTE+G+I V
Sbjct: 370 LEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERGNIDV 429
Query: 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 635
+V + + DS+E++
Sbjct: 430 SVEMRSQAGDSVELQ--------------------------------------------- 444
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
V DTG GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI
Sbjct: 445 ---FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLT 501
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAK 752
S + GSTF FT NS +M P S E + G + L+V+P A
Sbjct: 502 SRLHQGSTFWFTLRL----------NSTEM---PMSDLIEVELLTGKQLLLVEPNMQAAS 548
Query: 753 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 812
V++ + + GI V S L + + + L + +++ + + ++ +++
Sbjct: 549 VTQQILSQEGILVTYRS----SLPENEEHYDYVLLNLAANQTYDEQSVAA--WIEQAKRM 602
Query: 813 G----CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG 868
G S LA+ I + + KPL L SL +
Sbjct: 603 APSVIMGTPSTELALADQIMTEHQ---------IQCLTKPLSRRKLLQSLINEHVEAPQA 653
Query: 869 NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 928
P + L +L VDDN NLK+ +A LK V G++A L
Sbjct: 654 ----IAAPVETEESERLPLTVLAVDDNPANLKLISALLKERIETVTACSNGQQAVN-LAT 708
Query: 929 PHQFDACFMDIQMPEMDG 946
++D FMDIQMP MDG
Sbjct: 709 EKKYDLIFMDIQMPLMDG 726
>gi|334120111|ref|ZP_08494194.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333457293|gb|EGK85918.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1521
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 174/568 (30%), Positives = 269/568 (47%), Gaps = 77/568 (13%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ + + +A AA AKS+FLAT+SHEIRTPMNGV+GM +L+DT L Q+D+V T ++SG
Sbjct: 673 LAKARDQALAATRAKSEFLATMSHEIRTPMNGVIGMTGLLLDTPLTREQRDFVETIRSSG 732
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
AL++LIN++LD +K+ESGKL+LE F++R +++ L L + K+ +K +E+ I V
Sbjct: 733 DALLTLINDILDFSKIESGKLDLEEHPFDIRTCIEESLDLVAAKAAEKKLEVGYLIDRAV 792
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P T IGD R RQI+ NL+ N++KFTE G + V V I V + ++G
Sbjct: 793 PATAIGDSTRLRQILINLLSNAVKFTEAGEVVVAV-----TAKKISVSAANAKEPPAING 847
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
PV F +V+DTG GIP + R+F F Q
Sbjct: 848 EPVVINPAYEIHF------------------------AVKDTGIGIPSDRMDRLFKSFSQ 883
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI-----------------GSTFT 705
V S SR +GGTG+GL+ISK L M G + S+ ++ G +
Sbjct: 884 VDSSTSRQYGGTGLGLAISKRLAEMMGGRMWVESMGSVAGNPPADFRSAVFDLGWGESCE 943
Query: 706 FTAVFGNGSST-SNE---HNSQQMNNQ--------------PNSVSS---EFQGMKALVV 744
+G G S SN+ N++ + + P S+S+ E G + L+V
Sbjct: 944 IAEKYGYGKSVLSNKPIGQNTKSVGSTFYFSTIVSACNSCLPVSLSNSQPELAGKRVLIV 1003
Query: 745 DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL 804
D ++ Q G+ + L +A+ ++ ++ +++ ++ E D
Sbjct: 1004 DDNATNRRILTLQAQSWGMVARASASAHLALDWLAA-KEMFDLAVLDMQMPEMD---GLA 1059
Query: 805 FVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864
+R+ + L +L SI N+ + + + KP++ S L L G
Sbjct: 1060 LAAQIRRYPDCEKLPLVML-TSIGRQEINSPAMEMDFAAFLNKPIKQSQLYNVLINIFGE 1118
Query: 865 GN---KGNIRNWE-LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGK 920
KG + L S+ + L +IL+ DD+ VN KVA L+R G G
Sbjct: 1119 QTTEFKGQRTSGPFLQSIPVLAEDLPLRILLADDHLVNQKVALQILQRMGYRADVAGNGI 1178
Query: 921 KATELLMPPHQFDACFMDIQMPEMDGYE 948
+ E L +D MD+QMPEMDG E
Sbjct: 1179 EVLEALR-RQPYDVVLMDVQMPEMDGLE 1205
>gi|424034026|ref|ZP_17773436.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HENC-01]
gi|408873770|gb|EKM12959.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HENC-01]
Length = 932
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 184/618 (29%), Positives = 296/618 (47%), Gaps = 98/618 (15%)
Query: 346 SMYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH 404
S++ S + D ++ + N D R+ + R + K L + I + ++ H
Sbjct: 190 SVFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYH 249
Query: 405 ------IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGV 455
I QAT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV
Sbjct: 250 VEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGV 309
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
+G ++ T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F R
Sbjct: 310 IGFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRES 369
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
L++V++L + + +KG+E+ + + ++P+ L+GDP R +QI+TNL+GNSIKFTE+G+I +
Sbjct: 370 LEEVINLQATSAHEKGLEITLKVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDI 429
Query: 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 635
+V + + DS+E++
Sbjct: 430 SVEMRSQSGDSVELQ--------------------------------------------- 444
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
V DTG GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI
Sbjct: 445 ---FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLT 501
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAK 752
S + GSTF FT +S +M P S E + G + L+V+P A
Sbjct: 502 SRLHQGSTFWFTVRL----------HSTEM---PMSDLIEVELLTGKQLLLVEPNMQAAS 548
Query: 753 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 812
V++ + + GI V S L + + + L + ++ D SV+ ++ +++
Sbjct: 549 VTQQILSQEGILVTYRS----SLPENDENYDYVLLNLAANQTYD-DQSVAA-WIEQAKRM 602
Query: 813 G----CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG 868
G S LA+ + + + KPL L SL +
Sbjct: 603 APSVIMGTPSTELALADQVMNDHQ---------IQCLTKPLSRRKLLQSLITDHVETPQA 653
Query: 869 NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 928
I E P ++ R L +L VDDN NLK+ +A LK V G++A L
Sbjct: 654 VIAPIE-PVVNER---LPLTVLAVDDNPANLKLISALLKERVETVTACSNGQQAVN-LAT 708
Query: 929 PHQFDACFMDIQMPEMDG 946
++D FMDIQMP MDG
Sbjct: 709 EKKYDLIFMDIQMPLMDG 726
>gi|392539812|ref|ZP_10286949.1| sensor protein [Pseudoalteromonas marina mano4]
Length = 1118
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 169/564 (29%), Positives = 266/564 (47%), Gaps = 87/564 (15%)
Query: 395 ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 454
++ +A+L+G + ++ RI +E ++E K+ AE A AKS+FLAT+SHEIRTPMNG
Sbjct: 570 LITVATLIGSL-HSSQQRIEAEQE----LVEAKELAEQAVAAKSEFLATMSHEIRTPMNG 624
Query: 455 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514
VLGML+++ T+LD Q ++ AQ+S ++L+++IN++LD +K+E+GKL ++++ FNL
Sbjct: 625 VLGMLNIIKQTKLDQQQAHHIELAQSSAESLLNIINDILDFSKMEAGKLNIDSIQFNLPK 684
Query: 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 574
+L +V+ F+ K + +L + + +I DP R RQI+ NL+GN++KFT+ G +
Sbjct: 685 LLGEVVESFALKVEQNNTKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTKNGDVI 744
Query: 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 634
+ + V DS DGS
Sbjct: 745 I----IARVDDST---------------------------------DGSF---------- 757
Query: 635 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 694
L SV DTG GI Q+ +F F Q S +R GGTG+GL+I K L M G +
Sbjct: 758 --LECSVIDTGIGINKNQQTSLFNSFTQADTSTTRQFGGTGLGLTIVKQLCELMGGSVSV 815
Query: 695 VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 754
S+ GSTF+F+ S + S +NN+ + L +D + ++
Sbjct: 816 NSVEGEGSTFSFSVKIQPRLSKEQDLPSHLINNK-----------RILFIDECHLNTSIA 864
Query: 755 RYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814
+ G VE ++D + L + + + ILV+ + T + N K
Sbjct: 865 TKQLTIWGAHVEFINDYNEVLIHLEETTHSYDAILVDYHFFSVAAKTQTTALQNFIK--- 921
Query: 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 874
F+ K ++A S + ST +++ +I KPL S L SL +
Sbjct: 922 KFKCKSVIMAPMSYSQKE--STLKMNVDCMIFKPLTPSDLFDSLTNE-------KFLEQQ 972
Query: 875 LPSMSLRHLLLGRKI--------LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 926
L L + L I L+V+DN +N VA+A LK G E G++A L
Sbjct: 973 LNQAQLTNTLTKAPIKDSSEPVLLLVEDNKINQVVASALLKEAGVIFDIAENGEQAISKL 1032
Query: 927 MPPHQ--FDACFMDIQMPEMDGYE 948
+ MD QMP MDGY+
Sbjct: 1033 NAKQNNPYKLILMDCQMPIMDGYQ 1056
>gi|239907556|ref|YP_002954297.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239797422|dbj|BAH76411.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 1011
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 178/583 (30%), Positives = 280/583 (48%), Gaps = 87/583 (14%)
Query: 382 APWPLLAISTSIGILVIASLVGHIFQATVNRI---AKVEEDYHGMMELKKKAEAADV--- 435
+PW + ++ + ++A L + +A +R+ +++E L+K EAA+
Sbjct: 315 SPWMMTFVAGGFSLALLAGL-WQLMRANSDRMKLAGRLDEQSRMNDVLQKAKEAAESGSR 373
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
AKS FLA SHEIRTPMNG++GM ++L+ T L Q ++VRT S L+++IN++LD
Sbjct: 374 AKSAFLANTSHEIRTPMNGIIGMCNLLLGTRLSDKQLEFVRTVHYSANTLMAVINDILDF 433
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+++GK LE + F+LR +L+ L + Q KGVEL + +S +P L GDP R +Q
Sbjct: 434 SKIDAGKFSLEIIEFDLRRVLNMTLRPLTIACQQKGVELILVVSPHMPVFLRGDPARLQQ 493
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
+I NL+GN+IKFTE+G + V V
Sbjct: 494 VINNLVGNAIKFTERGEVAVCV-------------------------------------- 515
Query: 616 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
F S S + + SV+DTG G+ + Q IF PF QV S++R GGTG
Sbjct: 516 ----------DFLSESDGVAYIRFSVKDTGIGMSPQQQEIIFKPFEQVDSSLTRRFGGTG 565
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735
+GL+IS +L+ M G++ SI GS F F + P+ SS
Sbjct: 566 LGLAISSHLIELMGGQLSVESILGKGSEFFFEIGLAVAEQAPRAYWV------PD--SSV 617
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI----ASGSKIINMILVE 791
G+ LVVD + R + VE D + L+ + A G+ I ++L +
Sbjct: 618 LDGLNVLVVDDHATNRAILRELLAGWKALVEEAKDGFEALTILKEHEAQGNP-IRLLLSD 676
Query: 792 QEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI----MK 847
++ D + KL CG F+L ISSS+ +G PS++ +K
Sbjct: 677 LQMPGID---GLALAQRVEKL-CGSHPPAFIL---ISSSQ--IELEGGIAPSIVKDFLLK 727
Query: 848 PLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KILIVDDNNVNLKVAAAG 905
P S + + + +G+ + +++ S S+ + LG I++ +D+ VN +V +
Sbjct: 728 PFDPSHVLDCV--LISLGHAVKMTQFQVES-SIETVPLGEGLDIMVAEDSPVNQRVISHV 784
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L + G + VE G+ A L +FDA MD+QMP MDG E
Sbjct: 785 LHKMGHSFTIVENGQDAVT-LWERRKFDAILMDVQMPVMDGIE 826
>gi|2073556|gb|AAB53936.1| sensor/regulator protein RpfA [Pectobacterium carotovorum subsp.
carotovorum]
Length = 929
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 172/532 (32%), Positives = 259/532 (48%), Gaps = 92/532 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NG++G + T L+ TQ DY+ T + S L+
Sbjct: 282 KKRAQEAARIKSEFLANMSHELRTPLNGLIGFTRQTLKTPLNTTQTDYLLTIERSANNLL 341
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE + F+L LDDV+ L + + +KG+EL + I + VPE
Sbjct: 342 NIINDVLDFSKLEAGKLVLEDIPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQF 401
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R +QIITNL+GN+IKFTE+G+I + V + + + +E
Sbjct: 402 VGDPLRIQQIITNLLGNAIKFTEQGNIDIRVEKRRQELHQVLLE---------------- 445
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
V + DTG GI QS++F F Q S
Sbjct: 446 --------------------------------VQIRDTGIGIAELQQSQLFQAFRQADTS 473
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S + GSTF F H + +N
Sbjct: 474 ISRRHGGTGLGLVITQRLVKEMGGDISFQSELSKGSTFWF-------------HITLPLN 520
Query: 727 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIA 779
P+++ +E QG V+ PI A+ + L I Q ++ Q+
Sbjct: 521 --PHAIPTEPAYTMLQGKHLAYVEYHPIAAQAT------LDILSQTPLIVSYSPTFEQLP 572
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT-STDG 838
G +++L+ V ++T + + LR + C + L S++ A T G
Sbjct: 573 EGE--FDILLLGIPVQYRNTLLD--YTPRLRDI-CRRSPCVILALPSLAQMDAEQLKTFG 627
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL-LGRKILIVDDNNV 897
V + + KPL +S L LQ + + ++RHL L +++ VDDN
Sbjct: 628 VH--ACLSKPLAASRLLPLLQDSTLFQFSFLPDDTASHQSAVRHLARLPLRVMAVDDNPA 685
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKA---TELLMPPHQFDACFMDIQMPEMDG 946
NLK+ L+ ++ E G+ A EL +Q D MDIQMP MDG
Sbjct: 686 NLKLIGTLLEEQVETIILCESGQDAIAQAEL----NQCDIILMDIQMPGMDG 733
>gi|422911277|ref|ZP_16945903.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE-09]
gi|341631796|gb|EGS56673.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE-09]
Length = 916
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 175/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 198 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 257
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 258 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 317
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 318 LQTIEKSANNLLAIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 377
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 378 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 422
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 423 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 449
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 509
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 510 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 558
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 559 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 610
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 611 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLTNTSLPKPQADKLPLC- 655
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ V+ G++A E QFD MDIQMP MDG
Sbjct: 656 -VMAVDDNPANLKLITALLQERVEYVISCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 712
>gi|153830878|ref|ZP_01983545.1| sensor histidine kinase/response regulator, partial [Vibrio
cholerae 623-39]
gi|148873647|gb|EDL71782.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39]
Length = 714
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 161/527 (30%), Positives = 254/527 (48%), Gaps = 91/527 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY++T + S L+
Sbjct: 68 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLL 127
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+ + I ++P +
Sbjct: 128 TIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGV 187
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 188 VGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------------------- 220
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
++ D+I+L V DTG GI Q+++F F Q S
Sbjct: 221 ---------------------RALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADAS 259
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNE-HNSQQM 725
ISR +GGTG+GL I++ LV M GEI S + GSTF FT N+ +N+ +
Sbjct: 260 ISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELPLNDGYNADSL 319
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSDQLQCLSQI---A 779
N++ L+++P A + + + + G++V + ++ +
Sbjct: 320 NHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPEEQHVYDYVLLNL 368
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
+ SK N LV E+W + T + G S LA+ +
Sbjct: 369 APSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQLMQRYP------- 413
Query: 840 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 899
I KPL L +L + + N LP L L ++ VDDN NL
Sbjct: 414 --VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC--VMAVDDNPANL 464
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 465 KLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHMDG 510
>gi|17230367|ref|NP_486915.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17131969|dbj|BAB74574.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 1817
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 170/552 (30%), Positives = 257/552 (46%), Gaps = 91/552 (16%)
Query: 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
+ + K+ AEAA+ AKS+FLA +SHEIRTPMN V+GM +L+DTEL Q+D+V T S
Sbjct: 1125 ALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELTSQQRDFVETVLTS 1184
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
G AL+S+IN++LD +K+ESGKLELE F +R ++ V+ L + K+ K +ELA I +
Sbjct: 1185 GDALLSIINDILDFSKIESGKLELEEQPFEVRTCVEQVIDLLAAKAAQKDIELAYLIHPQ 1244
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
VP + GD R RQI+TNL+ N+IKFT +G + V+V
Sbjct: 1245 VPMQIAGDLTRLRQILTNLLNNAIKFTPEGEVVVSVR----------------------- 1281
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
SP + + +I +++DTG GI E +F PF+
Sbjct: 1282 --------------------SQPSP-NQKNKNCCEIIFTIKDTGIGIAPETMDLLFQPFV 1320
Query: 662 QVGPSISRTHGGTGIGLSISK--------YLVGRMKGEIGFVSIPN-------------I 700
Q S++R +GGTG+GL ISK YL +G +G P
Sbjct: 1321 QADASMTRKYGGTGLGLVISKRLGEMMGGYLWVESRGCVGGNPPPGWQTKNSISSASVAT 1380
Query: 701 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 760
GSTF F+ + E P + + G + L+VD P ++ R +
Sbjct: 1381 GSTFYFSMTVPVVAHADLE--------TPITSPVQLSGKRLLIVDDNPTNRQILRLQAEP 1432
Query: 761 LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 820
++ + L+ I G ++ +++ ++ E D +R+ L
Sbjct: 1433 WQMETYTAPSGAEALALIDQGMA-FDIAILDVQMPEMD---GLTLARQIRQRPSYQHLPL 1488
Query: 821 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP--SM 878
+L S + +T + + + KP++ S L L A +GN+ IR +P S
Sbjct: 1489 VILT---SWGQPDTDLSDIEFAACLNKPIKQSQLYDVL--ASTLGNQP-IRASVVPDRST 1542
Query: 879 SLRHLLLGR---KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF-DA 934
+ L + +IL+ +D VN KVA LK+ G V G + E L QF D
Sbjct: 1543 EINSCLAQQIPLRILLAEDIVVNQKVALLILKKMGYRADVVANGLEVLEALQ--RQFYDV 1600
Query: 935 CFMDIQMPEMDG 946
MD+ MPEMDG
Sbjct: 1601 VLMDVNMPEMDG 1612
>gi|354584519|ref|ZP_09003413.1| histidine kinase [Paenibacillus lactis 154]
gi|353194040|gb|EHB59543.1| histidine kinase [Paenibacillus lactis 154]
Length = 560
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 120/372 (32%), Positives = 205/372 (55%), Gaps = 56/372 (15%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+++ K++AE A AK++FLA +SHEIRTPMNGV+GM+D+LMDT+L+ Q++Y + S
Sbjct: 155 LIKAKEEAEIAAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDTDLEEEQREYATIIRKSA 214
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
+LV++IN++LD +K+ESGK+ELE F+L + + +V LFSG++ K +EL+ YI D +
Sbjct: 215 DSLVAIINDILDFSKMESGKMELEEYPFDLHSCVQEVFGLFSGEAAKKSLELSYYIEDSI 274
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P + GD GR RQ++ NL+ N++KFT +G +++ V L +
Sbjct: 275 PSMVFGDMGRLRQVLINLVSNAVKFTNEGGVYLVVSLTQ--------------------- 313
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
+ D + L +++DTG GI E R+F PF Q
Sbjct: 314 ---------------------------AEGDQLTLQFTLKDTGIGISAEKMDRLFQPFSQ 346
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
+ S++R +GGTG+GL+I K LV M G+I S G+TF FT ++E ++
Sbjct: 347 LDSSMTRRYGGTGLGLAICKSLVQMMGGQIVVESKEEQGATFVFTICV-----RAHEEDN 401
Query: 723 QQMNNQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA 779
++ + + +G+ + ++VD PI K+ + ++G++ ++ + Q + A
Sbjct: 402 HRLREEQQNSKYRVRGVNQPRIMIVDDHPINRKLMDSMLGKMGLRADMAENGKQAVDLAA 461
Query: 780 SGSKIINMILVE 791
S ++I ++
Sbjct: 462 SSKTSYDLIFMD 473
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QFDACFMDIQMPEMDG 946
+I+IVDD+ +N K+ + L + G E GK+A +L +D FMD+QMP MDG
Sbjct: 422 RIMIVDDHPINRKLMDSMLGKMGLRADMAENGKQAVDLAASSKTSYDLIFMDLQMPVMDG 481
Query: 947 YE 948
E
Sbjct: 482 LE 483
>gi|269839224|ref|YP_003323916.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
BAA-798]
gi|269790954|gb|ACZ43094.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
BAA-798]
Length = 1363
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 162/538 (30%), Positives = 260/538 (48%), Gaps = 93/538 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+ +A A KS+F+A +SHEIRTP+N ++GM ++L DT L Q+++V+T Q S ++L+
Sbjct: 834 RDQAIEASRLKSEFVANMSHEIRTPLNAIIGMTELLQDTPLSERQREFVQTIQTSSQSLL 893
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+GK+ LE V F+L ++++ + +G ++ KG+ L ++ +P TL
Sbjct: 894 SIINDILDFSKIEAGKMVLEEVDFDLVSLVEGTSEMLAGAARGKGISLMTFVDPTIPRTL 953
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R RQ++ NL+ N++KFTE+G + + V L DS EVE L ++T G
Sbjct: 954 IGDPARLRQVLLNLLSNAVKFTEQGEVLLRV-LPHRAADS-EVEL-LFEVRDTGIGI--- 1007
Query: 607 DRCHSWKGFKTFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665
D H K F+ F Q D ST
Sbjct: 1008 DSAHLGKLFQPFTQADAST----------------------------------------- 1026
Query: 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 725
+R +GGTG+GL+ISK LV M G I S P +GSTF FTA F + +QQ+
Sbjct: 1027 --TRRYGGTGLGLTISKTLVELMGGTIWAESQPGVGSTFRFTARF--KVAAMERSPTQQL 1082
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS--- 782
P+ + LVVD + ++ R +++ ++ E +D Q + +
Sbjct: 1083 VLPPD--------LHVLVVDDQAAHRQILRSYLESWHMRCEEAADGAQAIEKAQREHFDL 1134
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
I++++L + + ++ LR+L KL LL + + D
Sbjct: 1135 AILDLLLPDTDGFD--------LAQQLRRLSPSM--KLVLLTAHHEQGQGERAVDA-GFS 1183
Query: 843 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG-----------RKILI 891
+ ++KP+R S L M V + R P + IL+
Sbjct: 1184 AYLLKPIRQSQL-------MDVLANISARKEPQPQAEQAPSSAAAAAEPPAQGERKPILL 1236
Query: 892 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ-FDACFMDIQMPEMDGYE 948
+DN VN ++A L++ G +V V+ G++A E + Q + MD QMPEMDGYE
Sbjct: 1237 AEDNPVNRRLATLQLEKLGYSVRTVDNGREAVEEMARRGQEYCLVLMDCQMPEMDGYE 1294
>gi|421846716|ref|ZP_16279862.1| hybrid sensory histidine kinase BarA [Citrobacter freundii ATCC
8090 = MTCC 1658]
gi|411772046|gb|EKS55693.1| hybrid sensory histidine kinase BarA [Citrobacter freundii ATCC
8090 = MTCC 1658]
Length = 918
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 162/525 (30%), Positives = 252/525 (48%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTEGGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPN-----SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN S + G + V+P A+ + + ++V + S L +
Sbjct: 522 --PNVLVDRSTTLCLAGKRLAYVEPNATAAQCTLDILSETPLEV-IYSPSFSGLPKDHYD 578
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
++ + + +E L + + R + LLA +
Sbjct: 579 ILLLGIPVTLRE---------PLTMQHERLANAAAMTDFLLLALPCHAQINAEKLKQGGA 629
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L V + + + L + ++ VDDN NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQVNHSAD-------PLLLDDSKIAMTVMAVDDNPANLKL 682
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ VV + G +A + QFD MDIQMP+MDG
Sbjct: 683 IGALLEDKVQHVVLCDSGHQAVDRAR-QMQFDLILMDIQMPDMDG 726
>gi|359436217|ref|ZP_09226335.1| sensor protein [Pseudoalteromonas sp. BSi20311]
gi|358029077|dbj|GAA62584.1| sensor protein [Pseudoalteromonas sp. BSi20311]
Length = 1111
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 163/561 (29%), Positives = 273/561 (48%), Gaps = 87/561 (15%)
Query: 395 ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 454
++ I +L+G + ++ RI E +++ K+ AE A +AKS+FLA++SHEIRTPMNG
Sbjct: 568 LIAIGALIGSL-HSSEQRIETEAE----LVKAKEAAEQAVIAKSEFLASMSHEIRTPMNG 622
Query: 455 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514
VLGML+++ T LD Q+ +++ AQ+S ++L+ +IN++LD +K+E+GKL++E + FNL
Sbjct: 623 VLGMLNLIQTTSLDQQQRHHIKLAQSSAESLLGIINDILDFSKIEAGKLDIENIQFNLPK 682
Query: 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 574
+L +++ F+ K++ +L + + ++ DP R RQI+ NL+ N++KFT+ G +
Sbjct: 683 LLGEIVESFALKAESNNTQLILDTTHVSTSEIVCDPNRLRQILNNLIANAVKFTQNGQVL 742
Query: 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 634
VT +E+ +D+ +E C
Sbjct: 743 VTAT-IEKTLDNTTLE------------------C------------------------- 758
Query: 635 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 694
++ DTG GI L+ Q ++F F Q S +R +GGTG+GL+I K L M GE+
Sbjct: 759 -----AIIDTGIGISLDKQKQLFDSFTQADASTTRQYGGTGLGLAIVKQLCELMGGEVSV 813
Query: 695 VSIPNIGSTFTF----TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIR 750
S+PN GSTF F T+V +H Q + L+VD +
Sbjct: 814 NSLPNEGSTFAFSVNITSVIDQAFDLDCQH---------------IQAKRILIVDNSEMN 858
Query: 751 AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI-INMILVEQEVWEKDTSVSTLFVNNL 809
A ++ + G V V D + + I++ + ++ +++ E V+ L L
Sbjct: 859 ATITEKQLMLWGADVSAVCDYEEVEAYISNHQQTPPDVAIIDSSFLE---PVAHLQAEKL 915
Query: 810 RKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGN 869
+ F K +L + SS ++ G ++I KPL + L +L +
Sbjct: 916 KH----FLEKSHVLIMAPMSSSKSSLFYGDKETALIFKPLTAIDLYDTLVKGTLAEQPKE 971
Query: 870 IRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--M 927
+ EL +++ G +L+V+DN VN VA A LK+ E G+ A L
Sbjct: 972 V---ELSAINTPKKAKGH-VLLVEDNKVNQVVAGALLKQAELTFDIAEDGEDALTKLNQA 1027
Query: 928 PPHQFDACFMDIQMPEMDGYE 948
+ + MD QMP MDGY+
Sbjct: 1028 TANTYQLILMDCQMPIMDGYQ 1048
>gi|71908962|ref|YP_286549.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase, HAMP region:histidine
kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
gi|71848583|gb|AAZ48079.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase, HAMP region:Histidine
kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
Length = 923
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 171/543 (31%), Positives = 272/543 (50%), Gaps = 86/543 (15%)
Query: 416 VEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 475
VE+ + K+ AEA AKS+FLAT+SHEIRTPMNGVLGM ++L+ TEL+ TQ+ +V
Sbjct: 249 VEQRTRELRLAKEAAEAGSQAKSEFLATMSHEIRTPMNGVLGMTELLLGTELEPTQRQFV 308
Query: 476 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 535
+ SGK L+ +IN++LD +K+E+GKLEL+ V F+LR +L++ L LFS ++ KG+EL
Sbjct: 309 EAVERSGKHLLHIINDILDFSKIEAGKLELDVVDFDLRNLLEESLELFSQPARRKGLEL- 367
Query: 536 VYISDRVP-ETLI--GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592
++D P E LI GDP R RQI+TNL+GN++KFTE G I + + +VE + +++
Sbjct: 368 --VADLPPDEKLIVRGDPLRLRQIVTNLLGNAVKFTETGEILLRLLVVEPRDNGLKLALV 425
Query: 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 652
+S +T G P+ + ++ F DGST
Sbjct: 426 VS---DTGIGIPLDAQEKIFEHF--LQADGST---------------------------- 452
Query: 653 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712
+R +GGTG+GL+I ++LV M G I S P G+ FT
Sbjct: 453 ---------------TRKYGGTGLGLAICRHLVDMMGGRIHVESTPGKGAAFTVELDLPL 497
Query: 713 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 772
G Q + P + G + LVVD + +V ++ G E + L
Sbjct: 498 GKLPVASPEKQAL---PAT------GARVLVVDDSSTQREVLLALLRGRGFIAEGAASSL 548
Query: 773 QCLSQIASGSKIINMILVEQEVWEK---DTSVSTL----FVNNLRKLGCGFQSKLFLLAN 825
LS ++ + E E + DT + L V LR +++ +++
Sbjct: 549 AGLS-------VLKAAVEEGEPYALLLIDTQMPDLPGCDVVRALRADQNLAPTRVIIISA 601
Query: 826 SISS-SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL 884
+ + S+A ++ + I + + KP+R + L +++ + + + + P+ LR
Sbjct: 602 QVDALSKAERAS--LQIAACLPKPVRQAELLRAIETTLQRRSVSDTAVIDSPARKLR--- 656
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
GR +L+ +DN NL VA A L+R G V+ G++A ++L D MD QMP +
Sbjct: 657 -GR-VLVAEDNESNLVVARAQLERMGLEVIAASDGQQALDILA-EETVDLVLMDCQMPVL 713
Query: 945 DGY 947
DG+
Sbjct: 714 DGF 716
>gi|288959269|ref|YP_003449610.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
gi|288911577|dbj|BAI73066.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
Length = 1300
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 177/627 (28%), Positives = 280/627 (44%), Gaps = 104/627 (16%)
Query: 385 PLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATV 444
P L T+ +L + G + + IA+ + M + AEAA AKS+FLA +
Sbjct: 443 PFLVEYTASPMLADGKVEGAVL--VFHEIAERKRAEAAMQRARLAAEAASRAKSEFLANM 500
Query: 445 SHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504
SHEIRTPMN +LG++ +L TEL Q DYV+ + S ++L+ ++N++LD +KVE+GKLE
Sbjct: 501 SHEIRTPMNAILGLIHLLQQTELTGRQADYVQKVRVSAQSLLGILNDILDFSKVEAGKLE 560
Query: 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNS 564
LE F L +L + + +Q+K +++ ++ VP L+GDP R +QI+ NL GN+
Sbjct: 561 LERADFRLDDLLQTLAVIVGSAAQEKDIDVLFSVAPDVPLELVGDPLRLQQILINLAGNA 620
Query: 565 IKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624
IKFTE G + V+V L +T DG+
Sbjct: 621 IKFTETGEVVVSVRL------------------------------------RTLADDGAV 644
Query: 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 684
F SV DTG GI E + R+F F Q S +R GGTG+GL+I L
Sbjct: 645 LDF------------SVRDTGIGIAPEQRERLFEAFSQGDSSTTRRFGGTGLGLAICARL 692
Query: 685 VGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVV 744
V M G + S P GS F F A FG S + V + + LVV
Sbjct: 693 VRLMNGAMDVESEPGKGSVFRFRAEFGRRPGASGPEGADVPLQPARPVPRD---LTVLVV 749
Query: 745 DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI---ASGSKIINMILVEQEVWEKDTSV 801
D P +V + G V D + ++ A+ + +++L++ ++ D
Sbjct: 750 DDNPTAREVLGEIVTAFGWAVTACGDGRSAIDEVERAAAAGRAYDVVLMDWKMPGMDG-- 807
Query: 802 STLFVNNLRKL--GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML----A 855
+ R++ G + ++ + R + T+ +I ++KP+ +S L
Sbjct: 808 ----IETARRIHADAGAGMPMIIVVSGYGRERMDARTEETAISGFLVKPVTASTLLDAVT 863
Query: 856 ASLQRAMGVGNKGNIRNWELPS-----------------MSLRHLLLG------------ 886
+ R+ G ++ + LPS +S LG
Sbjct: 864 VAYARSGGGQSEPAVGGPRLPSPVPEPVPTPAPARAPAPVSTSGGGLGGPAWDASRALRG 923
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATE-LLMPPHQFDACFMDIQMPEMD 945
R++L+ DDN ++ +VA L+R GA V G++A + + M FDA +D+QMP+MD
Sbjct: 924 RRLLLADDNAISRQVAREILERAGADVTEAATGRQAVDRVRMADQPFDAVLLDVQMPDMD 983
Query: 946 GY------EMLPCFESFLLIAILVWKL 966
G+ LP +IA+ L
Sbjct: 984 GFAATAAIRALPVGRRLPIIAMTASAL 1010
>gi|433772826|ref|YP_007303293.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
gi|433664841|gb|AGB43917.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
Length = 1516
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 169/564 (29%), Positives = 256/564 (45%), Gaps = 107/564 (18%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ E +++A AD AKS+FLA +SHEIRTPMNGVLGM ++L + LD Q+ + SG
Sbjct: 952 LSEARRRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDPKQKTFTDIIVKSG 1011
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
AL+++IN++LD +K+++G+L L+ FNL ++DV +L S ++++K +EL V I R+
Sbjct: 1012 NALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRIEPRL 1071
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
IGD GR RQI+TNL+GN++KFT++GH+ V V T
Sbjct: 1072 ESLFIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDV---------------------TGER 1110
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
P R L +SV DTG GIP E +F F Q
Sbjct: 1111 VPTGTR----------------------------LTISVTDTGIGIPEEKLKLVFEKFSQ 1142
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +R H GTG+GL+I+ LV M G+IG S GSTF FT S + +
Sbjct: 1143 VDTSSTRRHEGTGLGLAITSRLVDLMGGDIGVESAEGKGSTFWFTVTLPGAGQQSGQRIT 1202
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSDQLQCLSQIA 779
P V+ G + L+VD + + + E ++ L+ L A
Sbjct: 1203 ------PVDVT----GARVLIVDDNAVNRAILTEQMTSWTFDSCAAESGAEGLKVLIAAA 1252
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
+ ++ ++++ ++ E + V N G ++ S+ S ANTS +
Sbjct: 1253 AYGVAVDCVVLDYQMPEMSGAEMARIVRNTE----GLADTPIIMLTSVDQSLANTSYRDL 1308
Query: 840 SIPSVIMKPLRSSM----LAASLQRAMGVGNKGNIRNW---------------------- 873
I + ++KP RSS+ L A++QR + ++
Sbjct: 1309 GIDAQLIKPARSSVLLETLVATIQRHRHATSGHAVQPLTGEAPEASRPPPLAPSEQRAQL 1368
Query: 874 -------ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 926
LP+ + H L IL+ +DN VN V L G V G+KA +
Sbjct: 1369 QPPQVRPRLPATAGGHRL---DILVAEDNEVNQMVFTQILGETGYGFEIVGNGRKALDAF 1425
Query: 927 MPPHQFDAC--FMDIQMPEMDGYE 948
+ C MD+ MPEM G E
Sbjct: 1426 ---GTLNPCMILMDVSMPEMSGLE 1446
>gi|374294279|ref|YP_005041304.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
gi|357428277|emb|CBS91234.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
Length = 1269
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 159/532 (29%), Positives = 255/532 (47%), Gaps = 75/532 (14%)
Query: 426 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 485
L+ +AEAA AKS+FLA +SHEIRTPMNG++GM ++L DT L Q + + ++S AL
Sbjct: 592 LRARAEAATQAKSEFLAAMSHEIRTPMNGIMGMTELLFDTPLTAEQHQFAQAIRSSSNAL 651
Query: 486 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 545
+++IN++LD +K+E+G++ +E + F+ +++ V+ L + ++ +KG+E+ YI + T
Sbjct: 652 LTIINDILDISKLEAGRVTIETLPFDPADLVEGVVELLTPRAHEKGIEIGFYIDPFLRRT 711
Query: 546 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 605
L+GDP R RQI+ NL+GN++KFT++G + V + E +D+ E G+ V
Sbjct: 712 LLGDPTRIRQILVNLVGNAVKFTDQGSVAVEL----EALDATE-------------GHLV 754
Query: 606 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665
L ++V DTG GIP EA +F F QV
Sbjct: 755 -------------------------------LRMTVTDTGIGIPAEALPSLFNKFQQVDG 783
Query: 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 725
SI+R GGTG+GL+I + L M G I S GS F +
Sbjct: 784 SITRKFGGTGLGLAICRQLSELMGGSIAVESSLGAGSRFVVDLPLA------------ML 831
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGS 782
+ G +ALVVD + +V + LG + V D L+ L++ A G
Sbjct: 832 DEALPPAEQPLAGRRALVVDDLAVNRRVLAAMLDSLGARPTAVDNGPDALEALTRAAVGG 891
Query: 783 KIINMILVEQEV--WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
+ +++LV+Q + D ++ + N + LG ++ L+A ++RA+
Sbjct: 892 RPFDVVLVDQTMPGMGGDALLAAIAGNPM--LGG---TRRVLIAGLGPAARADCGPVQGL 946
Query: 841 IPSVIMKPLRSSMLAASL----QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 896
+++ +PLR S L L Q A+ + P+ +IL+ +DN
Sbjct: 947 AHAILNRPLRQSALVGCLTGLFQAAVPPSSADRQAAEGQPADRSEEPARSGRILLAEDNR 1006
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
N A L++ G V E G++A D MD+QMP MDG E
Sbjct: 1007 TNQLFATTLLRKLGYTVEVAEDGEQAMAAAC-RGGIDLVLMDVQMPGMDGLE 1057
>gi|32401164|gb|AAP80772.1|AF525283_4 MmoS [Methylococcus capsulatus str. Bath]
Length = 1177
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 158/519 (30%), Positives = 250/519 (48%), Gaps = 78/519 (15%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KS FLA +SHEIRTPMNGVLGML++L DT++ Q D V TA S ++L+ +IN +LD +
Sbjct: 521 KSAFLANMSHEIRTPMNGVLGMLELLKDTDMSREQWDLVETASNSAESLLEIINSILDFS 580
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+GK+E+E FNL ++++V +L +G++ DKG+EL ++ +P IGDP R RQI
Sbjct: 581 KLEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQI 640
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+TNL+GNS+KFTE+G + V V E ++ E+ +G +A + + F+
Sbjct: 641 LTNLLGNSVKFTERGEVSVKVMQGEAGAKRTDLSFEIRD-----TGIGIAPDVQA-RLFQ 694
Query: 617 TFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
F Q DGST SR GGTG
Sbjct: 695 PFTQADGST-------------------------------------------SRRFGGTG 711
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735
+GLSI + LV M G IG S P GS F FT + + +
Sbjct: 712 LGLSICRNLVELMGGTIGLESAPGRGSRFWFTLPL------------EPLPGASAPALPD 759
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---SKIINMILVEQ 792
F + LVVD + +++ G++V+ L+++ + S+ +++L++
Sbjct: 760 FSHRRVLVVDDNATNRVILSHYLTHWGLEVDEAERGDTALNRLRTALHESRPYDIVLLDL 819
Query: 793 EVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS 852
+ D +N + G +L L + ++ + I ++KP+R S
Sbjct: 820 HMPYMDGHELARAMNA--EPGLKDTPRLLLSSGGLT---GEAELRALGIARSLLKPVRQS 874
Query: 853 MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL---GRKILIVDDNNVNLKVAAAGLKRY 909
+L ++ + K ++ P+ +L GR++L+V+DN VN KV A L ++
Sbjct: 875 LLFNAIAEVLAA--KATVQRR--PAAKTETVLPAYEGRRVLVVEDNRVNQKVIVAMLGKF 930
Query: 910 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G + G+ A ELL +D MD QMP + GYE
Sbjct: 931 GIVPDVADNGQAALELLA-RSSYDLVLMDCQMPVLGGYE 968
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQ---FDACFMDIQMP 942
R++L+VDDN N + + L +G V ERG A L H+ +D +D+ MP
Sbjct: 763 RRVLVVDDNATNRVILSHYLTHWGLEVDEAERGDTALNRLRTALHESRPYDIVLLDLHMP 822
Query: 943 EMDGYEM 949
MDG+E+
Sbjct: 823 YMDGHEL 829
>gi|429097710|ref|ZP_19159816.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
dublinensis 582]
gi|426284050|emb|CCJ85929.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
dublinensis 582]
Length = 670
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 167/527 (31%), Positives = 260/527 (49%), Gaps = 90/527 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L TQ+D++ T + S L+
Sbjct: 55 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 114
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL V + VP+ +
Sbjct: 115 SIINDVLDFSKLEAGKLLLESIPFPLRNTLDEVVTLLAHSAHDKGLELTVSVRHDVPDNV 174
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFT+ G+I + V + +++E ++ ++T G P
Sbjct: 175 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 231
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 232 DQSRLFQAFR---------------------------------------------QADAS 246
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S P+ GSTF F H S +N
Sbjct: 247 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 293
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ + GM+ V+ AK +R + + V V S +L L Q
Sbjct: 294 --PNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLDNTPLTV-VYSPELATLPQAH-- 348
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
+++L V +++ T+ + L + + L + +G S
Sbjct: 349 ---YDILLYAAPVTDREP--LTMRHDQLARAATLTDCLILALPCHAQINAEMLKKEGAS- 402
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KP+ ++ L L + + I ELP S L + ++ VDDN NLK+
Sbjct: 403 -ACLLKPVTATRLLPLL-----LEHCRQIHARELPEGSQGKLAM--TVMAVDDNPANLKL 454
Query: 902 AAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDG 946
A L+ VV + G +A E L P FD MDIQMP+MDG
Sbjct: 455 IGALLEDIVQHVVLCDSGHQAVERATLQP---FDIILMDIQMPDMDG 498
>gi|108757295|ref|YP_630537.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
DK 1622]
gi|108461175|gb|ABF86360.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
DK 1622]
Length = 944
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 166/547 (30%), Positives = 265/547 (48%), Gaps = 85/547 (15%)
Query: 420 YHGMMELKKKAEAA---DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 476
YH + +L++ +AA + AKS FLAT+SHEIRTPMN ++GM +L+D L Q+D+V
Sbjct: 250 YHDITDLERARKAAEAANQAKSLFLATMSHEIRTPMNAIIGMTGLLLDRALTEEQRDFVA 309
Query: 477 TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 536
T + S +AL++L+N+VLD +K+E+G+ E E F+LR ++ VL L + ++ +KG++L
Sbjct: 310 TIRQSSEALLTLLNDVLDFSKIEAGRFEAELRPFDLRQCVESVLDLMAVRASEKGLDLGC 369
Query: 537 YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSS 596
++ +P+ L+GD R RQ++ NL+GN++KFTE G V+V
Sbjct: 370 DLAPPLPQMLVGDASRLRQVLLNLVGNALKFTEHGGAVVSV------------------- 410
Query: 597 KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 656
+G +G+ L SV+DTG GIP + ++ +
Sbjct: 411 ----------------EGLALGGTEGAAD---------WELTFSVQDTGLGIPDDRRTGL 445
Query: 657 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS--IPNIGSTFTFTAVFGNGS 714
F PF Q+ S+SR GGTG+GL+ISK LV M G I S +P G+TF FT
Sbjct: 446 FQPFNQLDASVSRRFGGTGLGLAISKRLVEAMGGTIWVESEGVPGQGTTFRFT------- 498
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 774
+ Q QP QG + LVVD + ++ +Q G+ + +
Sbjct: 499 -LRAQAAPQAYAVQPRQEQGLLQGRRVLVVDDNALFRRLLGRQLQAWGLVPVESASGMDA 557
Query: 775 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 834
L+Q+ +G+ + +L++ + D T +R+ +++ L + R
Sbjct: 558 LAQLEAGAS-FDAVLIDHHMPGLD---GTALAERIRQR---EETRALPLVLVSTPGRRGN 610
Query: 835 STDGVSIPSVIMKPLRSSMLAASL-------------QRAMGVGNKGNIRNWELPSMSLR 881
+G+ V+ +PL+ S L +L R G E P ++
Sbjct: 611 PPEGL-FAGVLSRPLKDSQLYDALVSCFSQHLPQLPEPRQTRPSRAGPFPG-ERPGDTVP 668
Query: 882 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 941
IL+V+DN N K+A L+R G G++A + L ++DA MD+QM
Sbjct: 669 L-----DILLVEDNATNQKLALLVLERLGYRADVALNGRQALQALS-QKRYDAVLMDLQM 722
Query: 942 PEMDGYE 948
PEMDG E
Sbjct: 723 PEMDGLE 729
>gi|406835512|ref|ZP_11095106.1| PAS domain S-box [Schlesneria paludicola DSM 18645]
Length = 925
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 159/522 (30%), Positives = 263/522 (50%), Gaps = 72/522 (13%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
+KS+FLA +SHEIRTPMNGV+GM ++++DT+L Q++YV+ + S AL+++IN++LD
Sbjct: 268 SKSEFLANMSHEIRTPMNGVIGMTELVLDTDLTTEQREYVQAVKTSADALLTVINDILDF 327
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+E+GKL+L+ + +LR ++ + L + ++ +KG+EL I+D VP+ + DP R RQ
Sbjct: 328 SKIEAGKLDLDPIQLDLREMISNTLRPLAMRAHEKGLELTCDIADEVPDLHMADPVRLRQ 387
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
I+ NL+GN++KFT +G + +TV + + D+ + ++S +T G P K F
Sbjct: 388 ILINLIGNAVKFTAQGEVGLTVTVESHLNDAAVLHFDVS---DTGIGIPPEKLA---KVF 441
Query: 616 KTFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674
+ F+Q DGST +R GGT
Sbjct: 442 EPFSQADGST-------------------------------------------TRRFGGT 458
Query: 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSS 734
G+GL+IS LV M G + S GS F FTA G + ++ N P S
Sbjct: 459 GLGLTISAQLVEMMGGRVWIESHVGRGSHFHFTASLGRAPAVPSK-------NLPCK-SG 510
Query: 735 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI---ASGSKIINMILVE 791
G+ ALVVD ++ + +++ G+Q +V Q LS I A + + +ILV+
Sbjct: 511 NLNGLSALVVDDNATNRRILQEMLKKWGMQPTLVDSGSQALSAISHAADTNSMFQLILVD 570
Query: 792 QEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS-TDGVSIPSVIMKPLR 850
E+ + + + R C SK ++ + + R + + + I S ++KP+
Sbjct: 571 SEMPGMNGFALSEQIKQAR--AC---SKAIVMMLTSDNQRGDAARCRDLGIKSHLVKPIM 625
Query: 851 SSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR----KILIVDDNNVNLKVAAAGL 906
++ L S+ AM + ++ + + + R +IL+ DDN +N KVA L
Sbjct: 626 AADLLRSILIAMELAEPPSVDVFPISTTQESDPETTRIRPLQILLADDNLINQKVAVRML 685
Query: 907 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+R G VV G + ++L FD MD+QMP M G+E
Sbjct: 686 ERQGHTVVVANDGTEVLQIL-AMQSFDVILMDVQMPVMGGFE 726
>gi|53804659|ref|YP_113669.1| sensory box histidine kinase/response regulator [Methylococcus
capsulatus str. Bath]
gi|53758420|gb|AAU92711.1| sensory box histidine kinase/response regulator [Methylococcus
capsulatus str. Bath]
Length = 1177
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 158/519 (30%), Positives = 250/519 (48%), Gaps = 78/519 (15%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KS FLA +SHEIRTPMNGVLGML++L DT++ Q D V TA S ++L+ +IN +LD +
Sbjct: 521 KSAFLANMSHEIRTPMNGVLGMLELLKDTDMSREQWDLVETASNSAESLLEIINSILDFS 580
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+GK+E+E FNL ++++V +L +G++ DKG+EL ++ +P IGDP R RQI
Sbjct: 581 KLEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQI 640
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+TNL+GNS+KFTE+G + V V E ++ E+ +G +A + + F+
Sbjct: 641 LTNLLGNSVKFTERGEVSVKVMQGEAGAKRTDLSFEIRD-----TGIGIAPDVQA-RLFQ 694
Query: 617 TFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
F Q DGST SR GGTG
Sbjct: 695 PFTQADGST-------------------------------------------SRRFGGTG 711
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735
+GLSI + LV M G IG S P GS F FT + + +
Sbjct: 712 LGLSICRNLVELMGGTIGLESAPGRGSRFWFTLPL------------EPLPGASAPALPD 759
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---SKIINMILVEQ 792
F + LVVD + +++ G++V+ L+++ + S+ +++L++
Sbjct: 760 FSHRRVLVVDDNATNRVILSHYLTHWGLEVDEAERGDTALNRLRTALHESRPYDIVLLDL 819
Query: 793 EVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS 852
+ D +N + G +L L + ++ + I ++KP+R S
Sbjct: 820 HMPYMDGHELARAMNA--EPGLKDTPRLLLSSGGLT---GEAELRALGIARSLLKPVRQS 874
Query: 853 MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL---GRKILIVDDNNVNLKVAAAGLKRY 909
+L ++ + K ++ P+ +L GR++L+V+DN VN KV A L ++
Sbjct: 875 LLFNAIAEVLAA--KATVQRR--PAAKTETVLPAYEGRRVLVVEDNRVNQKVIVAMLGKF 930
Query: 910 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G + G+ A ELL +D MD QMP + GYE
Sbjct: 931 GIVPDVADNGQAALELLA-RSSYDLVLMDCQMPVLGGYE 968
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQ---FDACFMDIQMP 942
R++L+VDDN N + + L +G V ERG A L H+ +D +D+ MP
Sbjct: 763 RRVLVVDDNATNRVILSHYLTHWGLEVDEAERGDTALNRLRTALHESRPYDIVLLDLHMP 822
Query: 943 EMDGYEM 949
MDG+E+
Sbjct: 823 YMDGHEL 829
>gi|354724951|ref|ZP_09039166.1| hybrid sensory histidine kinase BarA [Enterobacter mori LMG 25706]
Length = 919
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 169/543 (31%), Positives = 253/543 (46%), Gaps = 122/543 (22%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + +EL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRGTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + + N M
Sbjct: 475 ISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWF--------HINLDLNPNVMT 526
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAK-----------------------VSRYHIQRLGI 763
+ P V+ +GM+ V+P A+ V Y I +GI
Sbjct: 527 DGP--VTDCLKGMRLAYVEPNAAAAQCTLDVLSTTPLEVVYSPTFSALAVEHYDILLMGI 584
Query: 764 QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 823
V +D + ++QE K S++ L L C Q L
Sbjct: 585 PVTFTAD-----------------LTMQQERLAKAASMTDYL---LLALPCHAQINAEEL 624
Query: 824 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL 883
N DG + + ++KPL ++ L +L + LP +S
Sbjct: 625 KN-----------DGAA--ACLLKPLTATRLLPALTEYCRLSQHA------LPLVSDEQ- 664
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
L ++ VDDN NLK+ L+ V G +A E QFD MDIQMP
Sbjct: 665 KLPMSVMAVDDNPANLKLIGVLLEDQVQHVELCTSGAQAVE-QAKQMQFDLILMDIQMPG 723
Query: 944 MDG 946
MDG
Sbjct: 724 MDG 726
>gi|350552733|ref|ZP_08921927.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349793042|gb|EGZ46884.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1362
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 135/395 (34%), Positives = 208/395 (52%), Gaps = 54/395 (13%)
Query: 405 IFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 464
I+Q + I +E +++ +++AEAA+ AKS FLA +SHEIRTPMN VLGM+ + ++
Sbjct: 861 IWQGVITDITAQKEAEAALIQARQEAEAANRAKSDFLANMSHEIRTPMNSVLGMMHLCLE 920
Query: 465 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 524
TEL Q+ Y+ AQ + +AL+ L+N++LD +KVE+G++ LEA+ F L +L+D+ S+ S
Sbjct: 921 TELTAPQRQYLDQAQRAARALLGLLNDILDFSKVEAGEITLEAIPFALSGVLNDLHSVVS 980
Query: 525 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 584
+++DKG+ L + +P+ L GDP R Q++ NL N+IKFTE+G+I ++V LV
Sbjct: 981 RQAKDKGLILHIERDPAIPDALQGDPLRLGQVLINLANNAIKFTEQGNITISVSLVR--- 1037
Query: 585 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644
+R W F+ V DT
Sbjct: 1038 ---------------------LEREQVWLAFR------------------------VRDT 1052
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G G+ + SR+F PF Q SI+R +GGTG+GLSI K L+ M+G+I S P GSTF
Sbjct: 1053 GIGMSEDQISRLFQPFHQADTSITRRYGGTGLGLSICKRLMELMQGDITVTSQPGRGSTF 1112
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 764
+ N Q N P ++ G + LVV+ + ++R ++R G
Sbjct: 1113 ALRLALRLAPA-----NWQLPTNVPPISQNQLVGRRILVVEDDSLNRIIARTLLERAGAH 1167
Query: 765 VEVVSDQLQCLSQI-ASGSKIINMILVEQEVWEKD 798
VE L L I G+K ++IL++ + E D
Sbjct: 1168 VEEAEQGLMALELIDKQGTKAWDLILMDIHMPELD 1202
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 843 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSL---RHLLLGRKILIVDDNNVNL 899
+V +P R S A L + N W+LP+ ++ L+GR+IL+V+D+++N
Sbjct: 1101 TVTSQPGRGSTFALRLALRLAPAN------WQLPTNVPPISQNQLVGRRILVVEDDSLNR 1154
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGYE 948
+A L+R GA V E+G A EL+ +D MDI MPE+DG E
Sbjct: 1155 IIARTLLERAGAHVEEAEQGLMALELIDKQGTKAWDLILMDIHMPELDGLE 1205
>gi|156975786|ref|YP_001446693.1| hybrid sensory histidine kinase BarA [Vibrio harveyi ATCC BAA-1116]
gi|156527380|gb|ABU72466.1| hypothetical protein VIBHAR_03530 [Vibrio harveyi ATCC BAA-1116]
Length = 932
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 183/618 (29%), Positives = 296/618 (47%), Gaps = 98/618 (15%)
Query: 346 SMYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH 404
S++ S + D ++ + N D R+ + R + K L + I + ++ H
Sbjct: 190 SVFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYH 249
Query: 405 ------IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGV 455
I QAT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV
Sbjct: 250 VEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGV 309
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
+G ++ T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F R
Sbjct: 310 IGFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRES 369
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
L++V++L + + +KG+E+ + + ++P+ L+GDP R +QI+TNL+GNSIKFTE+G+I +
Sbjct: 370 LEEVINLQATSAHEKGLEITLKVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDI 429
Query: 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 635
+V + + DS+E++
Sbjct: 430 SVEIRSQSGDSVELQ--------------------------------------------- 444
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
V DTG GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI
Sbjct: 445 ---FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLT 501
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAK 752
S + GSTF FT +S +M P S E + G + L+V+P A
Sbjct: 502 SRLHQGSTFWFTVRL----------HSTEM---PMSDLIEVELLTGKQLLLVEPNMQAAS 548
Query: 753 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 812
V++ + + GI V S L + + + L + ++ D SV+ ++ +++
Sbjct: 549 VTQQILSQEGILVTYRS----SLPENDENYDYVLLNLAANQTYD-DQSVAA-WIEQAKRM 602
Query: 813 G----CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG 868
G S LA+ + + + KPL L SL +
Sbjct: 603 APSVIMGTPSTELALADQVMNDHQ---------IQCLTKPLSRRKLLQSLITDHVETPQA 653
Query: 869 NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 928
I E P ++ R L +L VDDN NLK+ +A L+ V G++A L
Sbjct: 654 VIAPIE-PVVNER---LPLTVLAVDDNPANLKLISALLRERVETVTACSNGQQAVN-LAT 708
Query: 929 PHQFDACFMDIQMPEMDG 946
++D FMDIQMP MDG
Sbjct: 709 EKKYDLIFMDIQMPLMDG 726
>gi|262166495|ref|ZP_06034232.1| BarA sensory histidine kinase [Vibrio mimicus VM223]
gi|262026211|gb|EEY44879.1| BarA sensory histidine kinase [Vibrio mimicus VM223]
Length = 927
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 176/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L ++ I + ++ H I QAT + +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQTDY 328
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +++ +N++ L+++P A + + + + G++V + +
Sbjct: 521 LPMNDGYDASLLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ Q + + SK N LVE V + V G S LA+ +
Sbjct: 570 EEQVYDYVLLNLAPSKETNPTLVELWVQRALAMAHNVIV--------GVPSTELALADQL 621
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 622 MQRYP---------VKCIGKPLSRKKLLQTL-----AAQQPQLSNPSLPKPQADKLPLC- 666
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E H FD MDIQMP MDG
Sbjct: 667 -VMAVDDNPANLKLITALLQERVECVVACTSGQEAIEQAQIRH-FDIILMDIQMPHMDG 723
>gi|119469670|ref|ZP_01612539.1| putative sensor protein [Alteromonadales bacterium TW-7]
gi|119446917|gb|EAW28188.1| putative sensor protein [Alteromonadales bacterium TW-7]
Length = 1118
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 167/564 (29%), Positives = 268/564 (47%), Gaps = 87/564 (15%)
Query: 395 ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 454
++ +A+L+G + ++ RI +E ++E K+ AE A AKS+FLAT+SHEIRTPMNG
Sbjct: 570 LITVATLIGSL-HSSQQRIEAEQE----LVEAKELAEQAVAAKSEFLATMSHEIRTPMNG 624
Query: 455 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514
VLGML+++ T+LD Q ++ AQ+S ++L+++IN++LD +K+E+GKL ++++ FNL
Sbjct: 625 VLGMLNIIKQTKLDQQQAHHIELAQSSAESLLNIINDILDFSKMEAGKLNIDSIQFNLPK 684
Query: 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 574
+L +V+ F+ K + +L + + +I DP R RQI+ NL+GN++KFT+ G +
Sbjct: 685 LLGEVVESFALKVEQNNTKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTKNGDVI 744
Query: 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 634
+ + V DS DG+
Sbjct: 745 I----IARVDDST---------------------------------DGAF---------- 757
Query: 635 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 694
L SV DTG GI Q+ +F F Q S +R GGTG+GL+I K L M G +
Sbjct: 758 --LECSVIDTGIGINKNQQTSLFNSFTQADTSTTRQFGGTGLGLTIVKQLCELMDGSVNV 815
Query: 695 VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 754
S+ GSTF+F+ S + S +NN+ + L++D + ++
Sbjct: 816 NSVEGEGSTFSFSVKIQPRLSKEQDLPSHLINNK-----------RILIIDECHLNTSIA 864
Query: 755 RYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814
++ G VE ++D + L + ++ + ILV+ + T + N K
Sbjct: 865 TKQLKIWGAHVEFINDYNEVLIHLEEMARSYDAILVDYHFFSVAAKTQTTALQNFIK--- 921
Query: 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 874
F+ K ++A S + S +++ +I KPL S L SL +
Sbjct: 922 KFKCKSVIMAPMSYSQK--ESMLKMNVDCMIFKPLTPSDLFDSLTNE-------KFLEQQ 972
Query: 875 LPSMSLRHLLLGRKI--------LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 926
L L + L I L+V+DN +N VA+A LK G E G++A L
Sbjct: 973 LNQAQLTNTLTKAPIKDSSEPVLLLVEDNKINQVVASALLKEAGVIFDIAENGEEAISKL 1032
Query: 927 MPPHQ--FDACFMDIQMPEMDGYE 948
+ MD QMP MDGY+
Sbjct: 1033 NAKQNNPYKLILMDCQMPIMDGYQ 1056
>gi|302036187|ref|YP_003796509.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
gi|300604251|emb|CBK40583.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
Length = 945
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 161/541 (29%), Positives = 246/541 (45%), Gaps = 81/541 (14%)
Query: 416 VEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 475
V E + + K+ AEAA+ AKSQFLA +SHEIRTPMNGVLGM ++L+ T L Q+
Sbjct: 257 VRERTTELHQAKEAAEAANRAKSQFLANMSHEIRTPMNGVLGMTELLLSTALTQKQRSLT 316
Query: 476 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 535
T SG L+ +INE+LD +K+E+GKL+LE + F LR ++D + LF+ + K +EL
Sbjct: 317 ETLHRSGTGLMDIINEILDFSKIEAGKLKLERIEFGLRQTVEDAVDLFAETAGRKHLELT 376
Query: 536 VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 595
++ +P+T+IGDP R RQI+ NL+GN+IKFT+ G + VT+ LV ++ ++ +
Sbjct: 377 CFVPPDIPDTVIGDPVRLRQILLNLVGNAIKFTQSGDVAVTLELVTPTTTNLTLKFRI-- 434
Query: 596 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 655
++T G P A + ++ F
Sbjct: 435 -RDTGVGIPEATQARLFQAFS--------------------------------------- 454
Query: 656 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS 715
Q S +R GGTG+GL+I K L M G++G S+ GSTF FT
Sbjct: 455 ------QADNSTTRKFGGTGLGLAIVKQLALLMGGDVGVDSVSGQGSTFWFTVEL----- 503
Query: 716 TSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 775
+ Q + G L+VD P + H+ G V + L+ L
Sbjct: 504 ----EQAAQRTAASGATERPLDGFSILIVDDNPTNRHILETHLSAWGAAVLSATSGLEAL 559
Query: 776 SQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 832
+ + + + I++ +++ + + D + +L S + L+A S
Sbjct: 560 ALLDRQCTAQRRIHLAVLDIHMPDMDGMTLAQTIREDARL-----SGMVLVALSSVDQVT 614
Query: 833 NTSTDGVSIPSV-IMKPLRSSMLAASLQR------AMGVGNKGNIRNWELPSMSLRHLLL 885
+ S S+ S + KP S+L L R G + +P
Sbjct: 615 DESQRHPSLFSAWLRKPAHQSLLKDCLTRLCHHVPTTGAPAPVQPDDQAVP--------F 666
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
+L+ +DN VN +VA L+ G VE G++A E L FD MD MPEMD
Sbjct: 667 AAHVLLAEDNPVNREVAFTMLELLGCTTTMVENGREAVEALT-NRSFDLVLMDCHMPEMD 725
Query: 946 G 946
G
Sbjct: 726 G 726
>gi|334125404|ref|ZP_08499393.1| sensor histidine kinase GacS [Enterobacter hormaechei ATCC 49162]
gi|333386867|gb|EGK58071.1| sensor histidine kinase GacS [Enterobacter hormaechei ATCC 49162]
Length = 919
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 168/532 (31%), Positives = 258/532 (48%), Gaps = 100/532 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + +EL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L + S DKG+EL + I + VP+ +
Sbjct: 343 TIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRSLSNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQTRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521
Query: 727 NQPN-----SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN V+ +GM+ V+P A+ + + ++V V S L+
Sbjct: 522 --PNVQTDGPVTGCLKGMRLAYVEPNAAAAQCTLDVLSSTPLEV-VYSPTFSALANDHYD 578
Query: 782 SKIINM-------ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 834
++ + + ++QE K S++ L L C Q L N
Sbjct: 579 ILLLGIPVTFTGELTMQQERLAKAASMTDYL---LLALPCHAQINAEELKN--------- 626
Query: 835 STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDD 894
DG + + ++KPL ++ L +L + + LP + H L ++ VDD
Sbjct: 627 --DGAA--ACLLKPLTATRLLPALTEYC------RLTHQSLPLENDEH-KLPMTVMAVDD 675
Query: 895 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
N NLK+ L+ V G +A E QFD MDIQMP MDG
Sbjct: 676 NPANLKLIGVLLEDQVQHVELCTSGAEAVE-QAKQMQFDLILMDIQMPGMDG 726
>gi|317491023|ref|ZP_07949459.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920570|gb|EFV41893.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 913
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 175/557 (31%), Positives = 257/557 (46%), Gaps = 101/557 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T L+ TQ DY++T + S L+
Sbjct: 278 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVLKTPLNATQSDYLQTIERSANNLL 337
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE + F LR +D+V L + + +KG+EL + I + VPE +
Sbjct: 338 TIINDVLDFSKLEAGKLVLEHIPFLLRETIDEVTVLLAPSAHEKGIELTLNIRNDVPEHV 397
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q++TNL+GN+IKFTEKG+I + V L +E+E + +G ++
Sbjct: 398 IGDPMRIQQVLTNLLGNAIKFTEKGNIDIRVELRSATPHQVELEVLVHD-----TGIGIS 452
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+R S ++F F Q S
Sbjct: 453 ERQQS-------------------------------------------QLFQAFRQADAS 469
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + H Q
Sbjct: 470 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNKGSTFWFHIQLELNHNAPQSHFPMQ-- 527
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
G K L ++ P+ A+ + +Q ++V L+Q+ S +
Sbjct: 528 --------RLAGQKLLYIESNPVAAQCTLDLLQATPLEVSYSP----LLAQVIPDSH-YD 574
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG-----VSI 841
++LV V TS + LRK L L I + ++T D I
Sbjct: 575 ILLVGLPV--NFTSHDSQGEEKLRK-------ALSLADRVILAMPSHTLLDSDELKMRGI 625
Query: 842 PSVIMKPLRSS-----MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 896
S + KPL S+ +L SL + V N L M+ VDDN
Sbjct: 626 RSCLSKPLTSNRLLPILLDNSLPKRAPVVIDHNAERLPLSVMA------------VDDNP 673
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEM------L 950
NLK+ A L + G++A H+ D MDIQMPEMDG L
Sbjct: 674 ANLKLIGALLGELVEQTILCNSGEEAIA-KAKEHRLDIILMDIQMPEMDGIRTSELIRKL 732
Query: 951 PCFESFLLIAILVWKLN 967
P + +IA+ +N
Sbjct: 733 PRYIDTPIIAVTAHAIN 749
>gi|381157298|ref|ZP_09866532.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380881161|gb|EIC23251.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1375
Score = 216 bits (550), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 153/520 (29%), Positives = 254/520 (48%), Gaps = 69/520 (13%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KS+FLA +SHEIRTP+N V+G+ ++ + TELD Q+DY+ + S +AL+ ++N++LD +
Sbjct: 752 KSEFLANMSHEIRTPLNAVIGLTELTLSTELDARQRDYLDKVRHSSRALLGILNDILDYS 811
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+G++ LE F L +L+ + +LF ++ KG++L I+ +VP LIGDP R Q+
Sbjct: 812 KIEAGRVMLEQTQFRLEDLLEQLTALFQAAAEAKGLDLFYRIAPQVPRQLIGDPMRLGQV 871
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+ NL+GN++KFTE+G + + + +V E + IE
Sbjct: 872 LNNLVGNAVKFTEQGQVELAIRVVSERDERIE---------------------------- 903
Query: 617 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
L SV D+G G+ + R+F F Q SI+R +GGTG+
Sbjct: 904 --------------------LSFSVRDSGIGMAADTIERLFQAFTQADGSITRRYGGTGL 943
Query: 677 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 736
GL+IS+ LV M G I S P GSTF F A F E + ++ P+++
Sbjct: 944 GLTISQRLVRLMGGTIKARSAPEQGSTFCFHAEF-----KLPERAAARIGAPPHAIGQS- 997
Query: 737 QGMKALVVDPRPIRAKVSRYHIQ--RLG-IQVEVVSDQLQCLSQIASGSKIINMILVEQE 793
+ L+VD RP ++ +Q R+ ++ Q ++Q A+ + ++++L+E +
Sbjct: 998 ---RILIVDKRPAARQLLAEILQSWRMTLLEASSCPGARQAIAQAAAAGQPVDLVLLEAK 1054
Query: 794 ------VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMK 847
+ R LG + + L+ +SI ++ D +P ++ K
Sbjct: 1055 QCLDCRFCPVAAPPAPAEGLPPRALG-DPPTPVVLMVSSIEQAQLLARGDSSELPRLLAK 1113
Query: 848 PLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLK 907
P+ S L ++ E SL L G ++L+ +DN +N V L
Sbjct: 1114 PVTPSALFDAIANVTQAQRPVRAYAAEANPGSLSP-LQGVRVLVAEDNRINQMVVEGILC 1172
Query: 908 RYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
+ GA+V G++A +L + FD MD+QMP MDGY
Sbjct: 1173 QIGASVTLATNGREAADLAL-QQDFDVVLMDLQMPLMDGY 1211
>gi|260599137|ref|YP_003211708.1| hybrid sensory histidine kinase BarA [Cronobacter turicensis z3032]
gi|260218314|emb|CBA33302.1| Signal transduction histidine-protein kinase barA [Cronobacter
turicensis z3032]
Length = 919
Score = 216 bits (550), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 167/531 (31%), Positives = 259/531 (48%), Gaps = 98/531 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + + DKG+EL + + VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFT+ G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S P+ GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ + GM+ V+ AK +R + + V V S L L Q
Sbjct: 522 --PNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLANTPLTV-VYSPDLATLPQAHYD 578
Query: 782 SKIINMILVEQEVW----EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 837
+ + ++E ++ +TL + L C Q +L +
Sbjct: 579 ILLFAAPVTDREPLSMRHDQLARAATLTDCLILALPCHAQINAEML-----------KKE 627
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
G S + ++KP+ ++ L L + I ELP + + ++ VDDN
Sbjct: 628 GAS--ACLLKPVTATRLMPLLLEHCRL-----IHARELPDGDQSRMPM--TVMAVDDNPA 678
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L+ VV E G +A E +L P FD MDIQMP+MDG
Sbjct: 679 NLKLIGALLEDMVQHVVLCESGHQAVERAMLQP---FDIILMDIQMPDMDG 726
>gi|162456058|ref|YP_001618425.1| two-component hybrid histidine kinase [Sorangium cellulosum So
ce56]
gi|161166640|emb|CAN97945.1| two-component hybrid histidine kinase [Sorangium cellulosum So
ce56]
Length = 919
Score = 216 bits (550), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 154/529 (29%), Positives = 260/529 (49%), Gaps = 57/529 (10%)
Query: 439 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKV 498
+FLA+VSHEIRTPMNG++GM + + TEL Q++Y+ + S AL+S+IN+VLD +K+
Sbjct: 183 EFLASVSHEIRTPMNGIIGMTSLALQTELTQEQREYLEMVKISADALLSIINDVLDFSKI 242
Query: 499 ESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIIT 558
E+GKLE+E V F+ I+ D + + ++ +K +ELA + VPE L+GDP R RQ++
Sbjct: 243 EAGKLEIEPVVFDPSEIIGDAVKTLALRAHEKRLELAYDVGPDVPEALVGDPLRLRQVLV 302
Query: 559 NLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTF 618
NL+ N++KFT+ G + V EV + E +S ++
Sbjct: 303 NLVSNAVKFTDAGEVVVRA----EVDSRAPLTPEEEASADS------------------- 339
Query: 619 NQDGSTSPFKSSS-ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 677
G+ S + D + L VSV DTG GI E Q +F F Q S +R +GGTG+G
Sbjct: 340 --QGTPSLYAGEVLGDAVVLRVSVIDTGIGIAPEKQRVVFDAFAQADGSTTRKYGGTGLG 397
Query: 678 LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 737
L+I LV M G+I S GSTF FT + S+++ + +
Sbjct: 398 LTICARLVEMMGGKIWIESEAGKGSTFHFTLQL---RALEGAARSRRLE-----IPKDLL 449
Query: 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI------------- 784
G K L+ D ++ I+ G++ V ++ ++ S +
Sbjct: 450 GTKVLIADDNATARRILADTIEGWGMKAVPVDSGAAAIAALSEDSGVWALPWGKPGGNAV 509
Query: 785 -----INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
+ +V+ + + D V + RK + ++ +L +S S+ +
Sbjct: 510 GPSSSFGLAIVDARMPKVD---GFAVVEHCRKREI-LKGRVLMLLSSTSAQADVARCRDL 565
Query: 840 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 899
+ +++ KP+++S L ++ A GV + ++R+ + + G ++L+ +DN +N
Sbjct: 566 GVFAMVTKPVKTSHLQEAVFHAFGVPTRTSLRSADPRRAAPGPRARGLRVLVAEDNAINQ 625
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
K+ L+R G V VE G+ A E + Q+D +D++MPEMDG +
Sbjct: 626 KLMRRWLERQGHHVHIVENGRLAVEKIA-GGQYDVALLDVEMPEMDGLQ 673
>gi|355647545|ref|ZP_09055102.1| sensor protein gacS [Pseudomonas sp. 2_1_26]
gi|354827866|gb|EHF12004.1| sensor protein gacS [Pseudomonas sp. 2_1_26]
Length = 891
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 165/539 (30%), Positives = 251/539 (46%), Gaps = 104/539 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+K+A A KS+FLA +SHEIRTP+NG+LG ++L +EL QQDY+ T Q S ++L+
Sbjct: 240 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLTTIQKSAESLL 299
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+INE+LD +K+E+GKL LE + FNLR ++ D L++ + + +K +EL + P L
Sbjct: 300 GIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDTPIQL 359
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R +QI+TNL+GN+IKFT+ G + V L +E
Sbjct: 360 QGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDE------------------------ 395
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
S D L +SV+DTG G+ E Q +F F Q S
Sbjct: 396 ------------------------SDDRAQLRISVQDTGIGLSEEDQQALFKAFSQADNS 431
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+SR GGTG+GL ISK L+ +M GEIG S P G+ F + S+ N
Sbjct: 432 LSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISLSLP---------KSRDDN 482
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS--DQLQ----------- 773
+P +S G + +++P+ + + + + G++V + D LQ
Sbjct: 483 EEPG--ASWAAGQRVALLEPQELTRRSLHHQLTDFGLEVSEFADLDSLQESLRNPPPDQL 540
Query: 774 --CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
L+ + + I + Q WE +LGC K +L + ++
Sbjct: 541 PISLAVLGVSAAIHPPEELSQSFWE------------FERLGC----KTLVLCPTTEQAQ 584
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KI 889
+ + + V KP + L LQ + V + + + S GR ++
Sbjct: 585 YHAT---LPDEQVEAKPACTRKLQRKLQELLQVRPTRSDKPHAMVS--------GRPPRL 633
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L VDDN NL + L GA V V+ G A E++ +FD FMD+QMP MDG +
Sbjct: 634 LCVDDNPANLLLVQTLLSDLGAQVTAVDSGYAALEVVQ-RERFDLVFMDVQMPGMDGRQ 691
>gi|428770324|ref|YP_007162114.1| histidine kinase [Cyanobacterium aponinum PCC 10605]
gi|428684603|gb|AFZ54070.1| histidine kinase [Cyanobacterium aponinum PCC 10605]
Length = 662
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 135/387 (34%), Positives = 215/387 (55%), Gaps = 56/387 (14%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+++ K++AE A++AKSQFLA +SHEIRTPMNG+LGM+++L DT L+ Q++++ T + G
Sbjct: 271 LIKAKQEAETANLAKSQFLAMISHEIRTPMNGILGMVNLLEDTPLNNIQKEFLLTIRDGG 330
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
++L+++IN++L+ +K+ES KLELE +F+LR + V+ L ++Q+K + L I D +
Sbjct: 331 ESLLTIINDILNFSKIESNKLELETKNFSLRQCVKKVIDLLQFQAQEKNLSLTFEIDDSL 390
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P+ +GD R RQI+ NL+ N+IKFT +G + + V
Sbjct: 391 PDYFLGDIIRLRQILLNLVANAIKFTRQGEVKIIV------------------------- 425
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
Q +P + SA I I V+DTG GIPL QS++F PF Q
Sbjct: 426 -----------------QGKKINPNEKLSAYQILFI--VQDTGIGIPLHKQSKLFQPFSQ 466
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
+ SI+R +GGTG+GL+I K LV M+GEI S N GS+F F V S SN +
Sbjct: 467 LDASINRKYGGTGLGLAICKGLVEMMEGEIWLESEENKGSSFYFRVVL----SVSNNPQT 522
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIA 779
+ + S + +K L+V+ + KV +++LG ++ + D +Q L Q
Sbjct: 523 SSIVSTSVSSLTRQSSLKILIVEDNLVNQKVISLTLKKLGYHADIANHGVDAIQILQQ-- 580
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFV 806
K N+IL++ ++ E D +T ++
Sbjct: 581 ---KDYNLILMDMQMPEMDGIATTKWI 604
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
KILIV+DN VN KV + LK+ G G A ++L ++ MD+QMPEMDG
Sbjct: 540 KILIVEDNLVNQKVISLTLKKLGYHADIANHGVDAIQILQ-QKDYNLILMDMQMPEMDG 597
>gi|449143784|ref|ZP_21774607.1| hybrid sensory histidine kinase BarA [Vibrio mimicus CAIM 602]
gi|449080782|gb|EMB51693.1| hybrid sensory histidine kinase BarA [Vibrio mimicus CAIM 602]
Length = 927
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 176/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L ++ I + ++ H I QAT + +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQTDY 328
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +++ +N++ L+++P A + + + + G++V + +
Sbjct: 521 LPMNDGYDASLLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ Q + + SK N LVE V + V G S LA+ +
Sbjct: 570 EEQVYDYVLLNLAPSKETNPTLVELWVQRALAMAHNVIV--------GVPSTELALADQL 621
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 622 MQRYP---------VKCIGKPLSRKKLLQTL-----AAQQPQLSNPSLPKPQADKLPLC- 666
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E H FD MDIQMP MDG
Sbjct: 667 -VMAVDDNPANLKLITALLQERVECVVACTSGQEAIEQAQIRH-FDIILMDIQMPHMDG 723
>gi|237729749|ref|ZP_04560230.1| sensory histidine kinase [Citrobacter sp. 30_2]
gi|226908355|gb|EEH94273.1| sensory histidine kinase [Citrobacter sp. 30_2]
Length = 918
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 164/527 (31%), Positives = 255/527 (48%), Gaps = 90/527 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTEGGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPN-----SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN S + G + V+P A+ + L I E + + S
Sbjct: 522 --PNVIVDRSTTLCLAGKRLAYVEPNATAAQCT------LDILSETPLEVIYSPSFSGLP 573
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
++ +++L+ V ++ L + + R + LLA +
Sbjct: 574 AEHYDILLLGIPVTLRE----PLTMQHERLASAAAMTDFLLLALPCHAQINAEKLKQGGA 629
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + + + + L + ++ VDDN NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHSAD-------PLLLDESKIAMTVMAVDDNPANLKL 682
Query: 902 AAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
A L+ VV + G +A + MP FD MDIQMP+MDG
Sbjct: 683 IGALLEDKVQHVVLCDSGHQAVDRARQMP---FDLILMDIQMPDMDG 726
>gi|149188199|ref|ZP_01866493.1| sensory box histidine kinase/response regulator [Vibrio shilonii
AK1]
gi|148837788|gb|EDL54731.1| sensory box histidine kinase/response regulator [Vibrio shilonii
AK1]
Length = 1205
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 162/562 (28%), Positives = 265/562 (47%), Gaps = 82/562 (14%)
Query: 403 GHIFQATVNRIAKVEEDYHGMME--------LKKKAEAADVAKSQFLATVSHEIRTPMNG 454
G IF +T+ I + H +E + +A+ A+ AKS FLA +SHEIRTPMN
Sbjct: 439 GIIFMSTIVFIVLLANKSHAALEKSADKLAIARDEADYANQAKSDFLANMSHEIRTPMNA 498
Query: 455 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514
++GM + + T+L Q++Y++ + S L+ LIN++LD +K+E+GKL++E V F L
Sbjct: 499 IIGMSYLALKTDLTKAQRNYIQKVKLSADTLLGLINDILDFSKIEAGKLDIEHVDFRLEN 558
Query: 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 574
+LD++ +L K+ ++G+EL ++ S VP L GDP R QI+TNL N++KFTE+G +
Sbjct: 559 VLDNISNLVGLKASEQGLELLIHTSKDVPTALYGDPLRLGQILTNLANNAVKFTEQGEVK 618
Query: 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 634
+T+ D++E D
Sbjct: 619 ITI-----TADNLE-------------------------------------------NDD 630
Query: 635 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 694
+ L +V DTG G+ E ++F F Q S +R +GGTG+GL+ISK L M G+I
Sbjct: 631 VTLRFAVSDTGIGMTPEQTQKLFNKFTQADSSTTRKYGGTGLGLAISKELCLLMGGDIEV 690
Query: 695 VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 754
S GSTF FT N SQ + +P V + + L+VD +
Sbjct: 691 RSQFGEGSTFEFTI---------NMKRSQVLETKPIVVPTSLNHLNILIVDDNASARLIV 741
Query: 755 RYHIQRLGIQVEV---VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK 811
+Q L V V + L+ A ++++ + W+ ++ +++
Sbjct: 742 EDILQSLNFSVRSANGVDSAIDALNHAAQSDSAFDVVITD---WQMPGKDGVELIHAIQQ 798
Query: 812 LGCGFQSKLFLLANSISSSRANTSTD-GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI 870
K+ +L A++ + G+ +PS++ KP+ +S L ++ + N
Sbjct: 799 -SESLNPKILMLTAYDRQLLADSVQERGLIVPSILDKPVTASHLFDAIVGLYDIENHRTS 857
Query: 871 RNWELPSMSLRHL-----LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL 925
R+ EL + HL L G +L+V+DN +N ++A L+ V + G+ A +
Sbjct: 858 RD-ELEQQT--HLANVQHLAGAHLLLVEDNEINQELAVELLESQNIQVTVAQNGQVAID- 913
Query: 926 LMPPHQFDACFMDIQMPEMDGY 947
L FD MD QMP +DGY
Sbjct: 914 LYKQMTFDGILMDCQMPVLDGY 935
>gi|242238298|ref|YP_002986479.1| hybrid sensory histidine kinase BarA [Dickeya dadantii Ech703]
gi|242130355|gb|ACS84657.1| Hpt sensor hybrid histidine kinase [Dickeya dadantii Ech703]
Length = 918
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 168/550 (30%), Positives = 257/550 (46%), Gaps = 83/550 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T L TQQDY++T + S L+
Sbjct: 278 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQQDYLQTIERSANNLL 337
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE + F+L LD+V+ L + + +KG+EL + I VPE
Sbjct: 338 NIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVVMLLAHTAHEKGLELTLNIQHDVPEQF 397
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE+G+I I +E L
Sbjct: 398 IGDPLRLQQIITNLLGNAIKFTEQGNI------------DIRIEKRKQEQHQVL------ 439
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
L + ++DTG GI Q+++F F Q S
Sbjct: 440 ------------------------------LEIQIKDTGIGIAEIQQAQLFQAFRQADTS 469
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S N G+TF T Q+N
Sbjct: 470 ISRRHGGTGLGLVITQKLVREMGGDISFHSKLNQGTTFWCTLKL-------------QLN 516
Query: 727 N---QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 783
+PN + +G V+ P A+ + + + V S L+ L ++
Sbjct: 517 PHVLEPNHLFDMLKGKNLAYVESNPTAAQATLDILVHTPLTVS-YSPTLEQLP-----NR 570
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
+++LV + ++T + F +R+ C S + L S++ A I +
Sbjct: 571 AFDILLVGVPISYRNTLLD--FTPTIREF-CRLASNVILALPSLAEMDAE-QLKSFGIHA 626
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
+ KP+ + L LQ + P L L L ++ VDDN NLK+
Sbjct: 627 CLSKPITAPRLLTILQDNRLFSRSTAVATQPAPHSQLERLSL--TVMAVDDNPANLKLIG 684
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE------MLPCFESFL 957
A L+ ++ + G +A + D MDIQMP MDG + +P +
Sbjct: 685 ALLEEQVENIILCDNGAEAVA-KAKKNALDVILMDIQMPGMDGLQASELIHQIPLHRNTP 743
Query: 958 LIAILVWKLN 967
++A+ +N
Sbjct: 744 IVAVTAHTMN 753
>gi|194334707|ref|YP_002016567.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
DSM 271]
gi|194312525|gb|ACF46920.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
DSM 271]
Length = 991
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 195/674 (28%), Positives = 318/674 (47%), Gaps = 107/674 (15%)
Query: 299 ERIEATDGYLGGI----FDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSD 354
ER++ + +L G +++ V+KLL +L V D + P S+ N S
Sbjct: 205 ERVDRINRFLIGREARNMELKREVDKLLAELDRPFKYHVENADAVSGPVPFSLMDENAS- 263
Query: 355 DGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNRIA 414
G +S+ D + + P A + L +L+ + A V R A
Sbjct: 264 -GTAAISSALLTD-----------RDQVSIPENADPQLVIQLQRDALMNLLHDANVARNA 311
Query: 415 ------KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD 468
K+E+ ++ A+AA+ AKSQFLA +SHEIRTP+NGV+GM D+L+++ LD
Sbjct: 312 LLDANKKLEDAIRNARKMAAHADAANDAKSQFLANMSHEIRTPLNGVIGMTDLLLESALD 371
Query: 469 VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQ 528
Q+ + +T +SG+ L+ L+N++LD +K+E+ KLE+E + F+L +L++V++LF+ +
Sbjct: 372 TEQRKFAQTISSSGRNLLRLVNDILDFSKIEANKLEIEYLDFDLLDVLEEVIALFAYSAH 431
Query: 529 DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 588
+K V+L +P L GD R +QI+ NL+ N++KFT +G EVV S++
Sbjct: 432 EKNVDLIFLPDHTIPFRLKGDAARLQQILVNLVSNALKFTAEG----------EVVFSVD 481
Query: 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 648
+E E S + I VS DTG GI
Sbjct: 482 LERE------------------------------------SDATATIRFTVS--DTGIGI 503
Query: 649 PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708
E +F PF Q S+ R +GGTG+GLSIS L +M EI S P GSTF F+
Sbjct: 504 DSERIEAVFAPFTQADGSMIRKYGGTGLGLSISNQLARKMNSEIHVQSSPENGSTFCFSM 563
Query: 709 VFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP-RPIRAKVSRYHIQ---RLGIQ 764
+F + +NE N + G K ++VD P R + + + R +
Sbjct: 564 IFEKQKTQTNERN-----------EALLAGRKVMLVDDYEPCRKLLRLFAVSWNVRFAAE 612
Query: 765 VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLF--VNNLRKLGCGFQSKLFL 822
E +++ + L + A + +++ + + ++F ++N+ L Q L
Sbjct: 613 SE-LNEAIDLLERDARNGSPWDCVIIAVKDSASMMEIQSMFERLHNISLLDTLRQVLLLP 671
Query: 823 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL------QRAMGVGNK-GNIRNWEL 875
L ++ + S + +V+ KP+RS L++ L G G++ G E
Sbjct: 672 LGSTFNPD----SLPAGFVSAVLQKPVRSRDLSSCLFDLLCTSPGTGAGDEDGAPSEPEK 727
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPHQFDA 934
S ++ L +IL+V+D+ VN +V A L + G +V E G +A + L P +D
Sbjct: 728 ESKQVKPL----RILVVEDSVVNQQVLVAMLSKNGCSVDIAENGVEALKALGTTP--YDL 781
Query: 935 CFMDIQMPEMDGYE 948
MD QMPEMDG+E
Sbjct: 782 VLMDCQMPEMDGFE 795
>gi|164504822|gb|ABY59649.1| BarA [Yersinia ruckeri]
Length = 865
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 166/533 (31%), Positives = 252/533 (47%), Gaps = 101/533 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T L TQ DY++T Q S L+
Sbjct: 277 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLTPTQTDYLQTIQRSANNLL 336
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+ KL LE + F LR LD+V+ L + + +KG+EL + +++ VPE +
Sbjct: 337 SIINDVLDFSKLEAEKLVLEHIPFPLRETLDEVVILLAHTAHEKGLELTMQVNNDVPEQV 396
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R +Q++TNL+GN+IKFTE G++ + V L
Sbjct: 397 VGDSMRLQQVMTNLLGNAIKFTENGNVDIHVSL--------------------------- 429
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
R H+ + K L V ++DTG GI + QS++F F Q S
Sbjct: 430 -RSHTRRQIK--------------------LAVEIQDTGIGISEQQQSQLFQAFRQADAS 468
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF--TAVFGNG--------SST 716
ISR HGGTG+GL I++ LV M G+I F S N GSTF F T G S
Sbjct: 469 ISRRHGGTGLGLVITERLVKEMDGDISFHSELNRGSTFRFHITLDLHEGMVYRQPTMESL 528
Query: 717 SNEHNSQ-QMNNQPNSVSSEFQGMKALVVDPRPIRAKVS--RYHIQRLGIQVEVVSDQLQ 773
+ +H + + N + + + L V P A+++ Y I LG+ + ++
Sbjct: 529 AGKHLAYVERNPAAAQATLDMLSITPLRVTHSPTLAQLADKHYDILLLGVPIPFRTN--- 585
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
K+I + + +V S S + L++LG LA +S++R
Sbjct: 586 ---MAGHQDKLIAALKMADQVILALPSQSQIDAEQLKQLGAK-----ACLAKPVSANR-- 635
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
+ PL +L + KG+ LP +++ VD
Sbjct: 636 ------------LMPLLLKETPLALPAPVEPVTKGS----RLP----------LRVMAVD 669
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
DN NLK+ L+ ++ E G+ A + H D MDIQMPE+DG
Sbjct: 670 DNPANLKLIGTLLEEQVEEIILCESGEAAIAIAR-DHTLDVILMDIQMPEVDG 721
>gi|395229904|ref|ZP_10408214.1| signal transduction histidine-protein kinase BarA [Citrobacter sp.
A1]
gi|424730119|ref|ZP_18158717.1| hybrid sensory histidine kinase [Citrobacter sp. L17]
gi|394716579|gb|EJF22317.1| signal transduction histidine-protein kinase BarA [Citrobacter sp.
A1]
gi|422895331|gb|EKU35120.1| hybrid sensory histidine kinase [Citrobacter sp. L17]
Length = 918
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 161/525 (30%), Positives = 252/525 (48%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTEGGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPN-----SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN S + G + V+P A+ + + ++V + S L +
Sbjct: 522 --PNVLIDRSTTLCLAGKRLAYVEPNATAAQCTLDILSETPLEV-IYSPSFSGLPKDHYD 578
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
++ + + +E L + + R + LLA +
Sbjct: 579 ILLLGIPVTLRE---------PLTMQHERLANAAAMTDFLLLALPCHAQINAEKLKQGGA 629
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + + + + L + ++ VDDN NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHSAD-------PLLLDDSKIAMTVMAVDDNPANLKL 682
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ VV + G +A + QFD MDIQMP+MDG
Sbjct: 683 IGALLEDKVQHVVLCDSGHQAVDRAR-QMQFDLILMDIQMPDMDG 726
>gi|402848505|ref|ZP_10896762.1| Two-component hybrid sensor and regulator [Rhodovulum sp. PH10]
gi|402501252|gb|EJW12907.1| Two-component hybrid sensor and regulator [Rhodovulum sp. PH10]
Length = 731
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 152/536 (28%), Positives = 244/536 (45%), Gaps = 90/536 (16%)
Query: 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 480
+ E +++A+AA AKS+FLA VSHEIRTP+NG+LGM D+L+DT L Q Y + +
Sbjct: 209 RALAETRERADAASRAKSRFLAMVSHEIRTPLNGILGMTDLLLDTPLSPEQGAYAKAVKT 268
Query: 481 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 540
SG+AL++LI ++LD AK+E+GKLEL A F L A++++V+ L + ++ DKG+E+A ++
Sbjct: 269 SGRALLTLIEDMLDFAKIEAGKLELVARPFRLAAVVEEVVELLAPRAHDKGIEIAAFVDP 328
Query: 541 RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 600
R+ + +IGD R RQ++ NL GN++KFT +G + +
Sbjct: 329 RLADPVIGDDARLRQVLLNLGGNAVKFTAEGSVVI------------------------- 363
Query: 601 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660
A + + + V DTG GI EAQ+RIF F
Sbjct: 364 --------------------------LAEPGARVGEIALEVRDTGIGIAAEAQARIFEEF 397
Query: 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 720
Q +R HGG+G+GL+IS+ +V M G I S P G+ F T
Sbjct: 398 EQADGGAARKHGGSGLGLAISRRIVEGMDGAIAVDSAPGDGARFRVTVPL---------P 448
Query: 721 NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI-- 778
+ + P + + G + +V P A+ H+ G V VV+ S +
Sbjct: 449 AAPGLARAPEP-TPDLAGTRVAIVTTNPSAAEPVVRHLSAWGASVRVVAPDAADASLVDP 507
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
A G+ +++ + ++ Q ++ +L + + G
Sbjct: 508 AVGTVVVDRAIGPAAAAAIASTTPP-----------AGQRRIVMLRPNERGELTDFLAHG 556
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 898
S ++KP+R++ LA L G G P++ G ++L+ +DN++N
Sbjct: 557 FS--DYLVKPVRTASLAGRL----GAPAPGTAGPATAPTLVPDPAAAGCRVLVAEDNDIN 610
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELL-------MPPHQFDACFMDIQMPEMDGY 947
+ A L+R G V G A MP + MD+ MP MDG+
Sbjct: 611 ALLVRALLERMGHRPTLVGDGAAAVLAWEAAVSAGMP---YALVLMDLHMPGMDGF 663
>gi|444426173|ref|ZP_21221597.1| hybrid sensory histidine kinase BarA [Vibrio campbellii CAIM 519 =
NBRC 15631]
gi|444240586|gb|ELU52124.1| hybrid sensory histidine kinase BarA [Vibrio campbellii CAIM 519 =
NBRC 15631]
Length = 932
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 183/618 (29%), Positives = 296/618 (47%), Gaps = 98/618 (15%)
Query: 346 SMYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH 404
S++ S + D ++ + N D R+ + R + K L + I + ++ H
Sbjct: 190 SVFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYH 249
Query: 405 ------IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGV 455
I QAT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV
Sbjct: 250 VEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGV 309
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
+G ++ T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F R
Sbjct: 310 IGFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRES 369
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
L++V++L + + +KG+E+ + + ++P+ L+GDP R +QI+TNL+GNSIKFTE+G+I +
Sbjct: 370 LEEVINLQATSAHEKGLEITLKVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDI 429
Query: 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 635
+V + + DS+E++
Sbjct: 430 SVEMRSQSGDSVELQ--------------------------------------------- 444
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
V DTG GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI
Sbjct: 445 ---FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLT 501
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAK 752
S + GSTF FT +S +M P S E + G + L+V+P A
Sbjct: 502 SRLHQGSTFWFTVRL----------HSTEM---PMSDLIEVELLTGKQLLLVEPNMQAAS 548
Query: 753 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 812
V++ + + GI V S L + + + L + ++ D SV+ ++ +++
Sbjct: 549 VTQQILSQEGILVTYRS----SLPENDENYDYVLLNLAANQTYD-DQSVAA-WIEQAKRM 602
Query: 813 G----CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG 868
G S LA+ + + + KPL L SL +
Sbjct: 603 APSVIMGTPSTELALADQVMNDHQ---------IQCLTKPLSRRKLLQSLITDHVETPQA 653
Query: 869 NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 928
I E P ++ R L +L VDDN NLK+ +A L+ V G++A L
Sbjct: 654 VIAPIE-PVVNER---LPLTVLAVDDNPANLKLISALLRERVETVTACSNGQQAVN-LAT 708
Query: 929 PHQFDACFMDIQMPEMDG 946
++D FMDIQMP MDG
Sbjct: 709 EKKYDLIFMDIQMPLMDG 726
>gi|428224217|ref|YP_007108314.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
gi|427984118|gb|AFY65262.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Length = 957
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 172/572 (30%), Positives = 266/572 (46%), Gaps = 80/572 (13%)
Query: 386 LLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVS 445
L AI+ +GI + + V + Q T R ++ E + + AEAA+ AKS FLA +S
Sbjct: 271 LAAIADQVGIALAQAQV--LAQETRQR-QEMTEKNAALEHARYIAEAANHAKSSFLAVMS 327
Query: 446 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505
HEIRTPMN V+GM D+L+DT L Q+D+ +T + SG+AL+++IN++LD +K+ESGKL++
Sbjct: 328 HEIRTPMNAVIGMTDLLLDTSLTPQQEDFAQTIRTSGEALLAIINDILDFSKIESGKLDI 387
Query: 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 565
+ F+LR+ ++ L L + K+ +K +EL +I VP L+GD R RQI+ NL+GN++
Sbjct: 388 QNHPFDLRSCIESALDLLAPKAAEKQLELVYFIEPHVPTELVGDEVRLRQILVNLVGNAV 447
Query: 566 KFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 625
KFT +G + + V +G ++ D
Sbjct: 448 KFTAEGFVAIAV-----------------------TG-------------RSLTPDSQA- 470
Query: 626 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 685
SS A L + +V+DTG GIP + R+F PF QV R +GGTG+GL IS+ L
Sbjct: 471 ---SSEAPLYTIRFTVQDTGIGIPSDRLDRLFRPFSQVDSFTGRQYGGTGLGLVISQRLS 527
Query: 686 GRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVD 745
M G I S GSTF + + + + + G + L+VD
Sbjct: 528 EMMGGRIWVDSEVEQGSTFYVSVLMAARPAAPAPGRERPLA-----------GKRLLLVD 576
Query: 746 PRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLF 805
+ + G+ V V + L+++A+G + ++ L++ + + D L
Sbjct: 577 DHALVRHSLTTDAEAWGMGVCAVDSGVAALARLAAGDR-FDVALIDHTLPDTDGHSLALR 635
Query: 806 VNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV---------IMKPLRSSMLAA 856
+ A+ + + IP V + KP+R + L
Sbjct: 636 MRE-------------DYADQPLALVLLAPLGNLPIPEVDERALFQAEVHKPVRQAQLYG 682
Query: 857 SLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KILIVDDNNVNLKVAAAGLKRYGAAVV 914
L + P L R +IL+ +DN VN KVA LKR G +
Sbjct: 683 VLSEVLSEAPDPIASPAPPPLAPAADALPPRSLRILLAEDNLVNQKVALHLLKRLGYSAD 742
Query: 915 CVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
G++A E L +D MDIQMPEMDG
Sbjct: 743 VAHNGREALESLQ-RRAYDLVLMDIQMPEMDG 773
>gi|269960400|ref|ZP_06174773.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834827|gb|EEZ88913.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 932
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 181/618 (29%), Positives = 295/618 (47%), Gaps = 98/618 (15%)
Query: 346 SMYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH 404
S++ S + D ++ + N D R+ + R + K L + I + ++ H
Sbjct: 190 SVFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYH 249
Query: 405 ------IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGV 455
I QAT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV
Sbjct: 250 VEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGV 309
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
+G ++ T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F R
Sbjct: 310 IGFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRES 369
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
L++V++L + + +KG+E+ + + ++P+ L+GDP R +QI+TNL+GNSIKFTE+G+I +
Sbjct: 370 LEEVINLQATSAHEKGLEITLKVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDI 429
Query: 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 635
+V + + DS+E++
Sbjct: 430 SVEMRSQSGDSVELQ--------------------------------------------- 444
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
V DTG GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI
Sbjct: 445 ---FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLT 501
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAK 752
S + GSTF FT +S +M P S E + G + L+V+P A
Sbjct: 502 SRLHQGSTFWFTVRL----------HSTEM---PMSDLIEVELLTGKQLLLVEPNMQAAS 548
Query: 753 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 812
V++ + + GI V S L + + + L + +++ + + ++ +++
Sbjct: 549 VTQQILSQEGILVTYRS----SLPENDENYDYVLLNLAANQTYDEQSVAA--WIEQAKRM 602
Query: 813 G----CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG 868
G S LA+ + + + KPL L SL +
Sbjct: 603 APSVIMGTPSTELALADQVMNDHQ---------IQCLTKPLSRRKLLQSLITDHVETPQA 653
Query: 869 NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 928
I E P ++ R L +L VDDN NLK+ +A LK V G++A L
Sbjct: 654 VIAPIE-PVVNER---LPLTVLAVDDNPANLKLISALLKERVETVTACSNGQQAVN-LAT 708
Query: 929 PHQFDACFMDIQMPEMDG 946
++D FMDIQMP MDG
Sbjct: 709 EKKYDLIFMDIQMPLMDG 726
>gi|383812706|ref|ZP_09968133.1| hybrid sensory histidine kinase BarA [Serratia sp. M24T3]
gi|383298116|gb|EIC86423.1| hybrid sensory histidine kinase BarA [Serratia sp. M24T3]
Length = 921
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 165/523 (31%), Positives = 248/523 (47%), Gaps = 84/523 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T+L TQ DY++T + S L+
Sbjct: 282 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTQLSPTQTDYLQTIERSANNLL 341
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE + F+LR +LD+V+ L + + DKG+EL + + VPE +
Sbjct: 342 TIINDVLDFSKLEAGKLVLEHIPFSLREMLDEVVILLAHSAHDKGLELTINVHSNVPEFV 401
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R +Q++TNL+GN+IKFTE G+I + V EL S KN
Sbjct: 402 LGDPMRLQQVVTNLLGNAIKFTENGNIDINV--------------ELRSQKNA------- 440
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ L + DTG GI Q+++F F Q S
Sbjct: 441 ---------------------------QVELEMQFHDTGIGISERQQAQLFQAFRQADAS 473
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R HGGTG+GL I++ LV M G+I F S N GSTF F NE + Q
Sbjct: 474 ITRRHGGTGLGLVITQRLVKEMGGDISFYSQLNRGSTFWFHVTL-----ELNESHHQ--- 525
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+P S++ + K ++ P K + + + I EV+ Q L I+
Sbjct: 526 -RPRSMAC-LRDKKLAYIEANPTATKAVKEMLSSMPI--EVIHRTSQALLPDEHYDFIVY 581
Query: 787 --MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
IL+ + + + L++L + L + S GV +
Sbjct: 582 GMPILLNHHLND--------YEERLQQLLSQCDRLILALPSQFQISAEQLKDKGVY--AC 631
Query: 845 IMKPLRS-SMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
+ KPL S +L L+ + N + LP ++ VDDN NLK+
Sbjct: 632 LNKPLSSVRLLPYLLEDPKNFIEEDNSHDQRLP----------MTVMAVDDNPANLKLIG 681
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ + G++A EL + D MDIQMP +DG
Sbjct: 682 ALLEELVETTLLCNSGEEAIELAKNVN-MDVILMDIQMPNIDG 723
>gi|295097349|emb|CBK86439.1| Hpt sensor hybrid histidine kinase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 919
Score = 216 bits (549), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 167/532 (31%), Positives = 258/532 (48%), Gaps = 100/532 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + +EL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L + S DKG+EL + I + VP+ +
Sbjct: 343 TIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQTRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521
Query: 727 NQPN-----SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN V+ +GM+ V+P A+ + + ++V + S L+
Sbjct: 522 --PNVQTDGPVTGCLKGMRLAYVEPNAAAAQCTLDVLSSTPLEV-IYSPTFSALANDHYD 578
Query: 782 SKIINM-------ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 834
++ + + ++QE K S++ L L C Q L N
Sbjct: 579 ILLLGIPVTFTGELTMQQERLAKAASMTDYL---LLALPCHAQINAEELKN--------- 626
Query: 835 STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDD 894
DG + + ++KPL ++ L +L + + LP + H L ++ VDD
Sbjct: 627 --DGAA--ACLLKPLTATRLLPALTEYC------RLTHQSLPLENDEH-KLPMTVMAVDD 675
Query: 895 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
N NLK+ L+ V G +A E QFD MDIQMP MDG
Sbjct: 676 NPANLKLIGVLLEDQVQHVELCTSGAEAVE-QAKQMQFDLILMDIQMPGMDG 726
>gi|428315640|ref|YP_007113522.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
gi|428239320|gb|AFZ05106.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
7112]
Length = 1532
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 175/578 (30%), Positives = 267/578 (46%), Gaps = 97/578 (16%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ + + +A AA AKS+FLAT+SHEIRTPMNGV+GM +L+DT L Q+D+V T ++SG
Sbjct: 673 LAKARDQALAATRAKSEFLATMSHEIRTPMNGVIGMTGLLLDTPLTREQRDFVETIRSSG 732
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
AL++LIN++LD +K+ESGKL+LE F++R +++ L L + K+ +K +E+ I V
Sbjct: 733 DALLTLINDILDFSKIESGKLDLEEHPFDIRTCIEESLDLVAAKAAEKKLEVGYLIDRTV 792
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P T IGD R RQI+ NL+ N++KFT+ G + V+V I V S ++G
Sbjct: 793 PATAIGDSTRLRQILINLLSNAVKFTDAGEVVVSV-----TAKKISVPAANSKEPPLIAG 847
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
P+A +P + +V+DTG GIP + R+F F Q
Sbjct: 848 EPLA-----------------INP-------AYEIQFAVKDTGIGIPSDRMDRLFKSFSQ 883
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN----------------------- 699
V S SR +GGTG+GL+ISK L M G + S+ N
Sbjct: 884 VDSSTSRQYGGTGLGLAISKRLAEMMGGRMWVESMGNLAGKPPADFKSAVLDLGWAESCE 943
Query: 700 -----------------------IGSTFTFTAVFG--NGSSTSNEHNSQQMNNQPNSVSS 734
+GSTF F+ + N S N NSQ
Sbjct: 944 IAEKNGYAKSVLSNKPIGQNTKSVGSTFYFSTIVSGCNSSLPVNLSNSQ----------P 993
Query: 735 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEV 794
E G + L+VD ++ Q G+ + L +A+ ++ ++ +++ ++
Sbjct: 994 ELAGKRVLIVDDNATNRRILTLQAQSWGMVARASASARLALDWLAA-KEMFDLAVLDMQM 1052
Query: 795 WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML 854
E D +R+ + L +L SI N+ + + + KP++ S L
Sbjct: 1053 PEMD---GLALAAQIRQYPDCEKLPLVML-TSIGRQEINSPAMEMDFAAFLNKPIKQSQL 1108
Query: 855 AASLQRAMGVGN---KGNIRNWE-LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYG 910
L G KG + L ++ + L +IL+ DD+ VN KVA L+R G
Sbjct: 1109 YNVLINIFGEQTTEFKGQRTSGPFLQTIPVLAENLPLRILLADDHLVNQKVALQILQRMG 1168
Query: 911 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G + E L +D MD+QMPEMDG E
Sbjct: 1169 YRADVAGNGIEVLEALR-RQPYDVVLMDVQMPEMDGLE 1205
>gi|217972048|ref|YP_002356799.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
gi|217497183|gb|ACK45376.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
Length = 1792
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 166/536 (30%), Positives = 263/536 (49%), Gaps = 77/536 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++A+AA AK FLA +SHEIRTPMN ++GM + + TELD Q++YV + + ++L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+GKL++++V F L +L+D+ +FS K+ K +EL ++ VP L
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYL 1152
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R Q++ NLM N+IKFTE+G + +++ LVE+ D + + + S L+ A
Sbjct: 1153 LGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQA 1212
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
K FK+F Q DT S
Sbjct: 1213 ------KLFKSFTQ---------------------ADT---------------------S 1224
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I K LV M G+IG S GSTF FT H S +
Sbjct: 1225 TTRKYGGTGLGLAICKQLVELMGGKIGVESQLGHGSTFYFTVKL---------HIS---D 1272
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ----CLSQIASGS 782
Q + E +GM LVVD + R ++ +G +V+ V + CL Q +
Sbjct: 1273 GQKLVLEQELEGMSVLVVDDNATARDIMRTTLESMGFRVDTVRSGEEAISRCLLQAYEVA 1332
Query: 783 ----KIINMILVE---QEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 835
K+ NM +E Q + + + L+ ++ + T
Sbjct: 1333 LIDWKMPNMDGLETARQIQLQAQSQSQSQSQPQSHPQPQPQPQPKILMVSAHADHEFLTQ 1392
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI---RNWELPSMSLRHLLLGRKILIV 892
+ +++ I KP+ +S L + A +G +G + R E + L L G++IL+V
Sbjct: 1393 IEQLALAGYISKPISASRLLDGIMNA--IGREGILPVRRRTEELAPQLLVPLQGKRILLV 1450
Query: 893 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+DN +NL+VA+ L++ G + G+ A + L H FD MD QMP MDGY+
Sbjct: 1451 EDNEMNLEVASEFLEQVGIILSIATNGQIALDKLSQQH-FDLVLMDCQMPVMDGYQ 1505
>gi|424047708|ref|ZP_17785266.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HENC-03]
gi|408883672|gb|EKM22451.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HENC-03]
Length = 932
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 181/618 (29%), Positives = 295/618 (47%), Gaps = 98/618 (15%)
Query: 346 SMYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH 404
S++ S + D ++ + N D R+ + R + K L + I + ++ H
Sbjct: 190 SVFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYH 249
Query: 405 ------IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGV 455
I QAT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV
Sbjct: 250 VEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGV 309
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
+G ++ T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F R
Sbjct: 310 IGFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRES 369
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
L++V++L + + +KG+E+ + + ++P+ L+GDP R +QI+TNL+GNSIKFTE+G+I +
Sbjct: 370 LEEVINLQATSAHEKGLEITLKVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDI 429
Query: 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 635
+V + + DS+E++
Sbjct: 430 SVEMRSQSGDSVELQ--------------------------------------------- 444
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
V DTG GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI
Sbjct: 445 ---FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLT 501
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAK 752
S + GSTF FT +S +M P S E + G + L+V+P A
Sbjct: 502 SRLHQGSTFWFTVRL----------HSTEM---PMSDLIEVELLTGKQLLLVEPNMQAAS 548
Query: 753 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 812
V++ + + GI V S L + + + L + +++ + + ++ +++
Sbjct: 549 VTQQILSQEGILVTYRS----SLPENDENYDYVLLNLAANQTYDEQSVAA--WIEQAKRM 602
Query: 813 G----CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG 868
G S LA+ + + + KPL L SL +
Sbjct: 603 APSVIMGTPSTELALADQVMNDHQ---------IQCLTKPLSRRKLLQSLITDHVETPQA 653
Query: 869 NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 928
I E P ++ R L +L VDDN NLK+ +A LK V G++A L
Sbjct: 654 VIAPIE-PVVNER---LPLTVLAVDDNPANLKLISALLKERVETVTACSNGQQAVN-LAT 708
Query: 929 PHQFDACFMDIQMPEMDG 946
++D FMDIQMP MDG
Sbjct: 709 EKKYDLIFMDIQMPLMDG 726
>gi|424800861|ref|ZP_18226403.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
sakazakii 696]
gi|423236582|emb|CCK08273.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
sakazakii 696]
Length = 984
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 167/531 (31%), Positives = 259/531 (48%), Gaps = 98/531 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + + DKG+EL + + VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFT+ G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S P+ GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ + GM+ V+ AK +R + + V V S L L Q
Sbjct: 522 --PNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLANTPLTV-VYSPDLASLPQAHYD 578
Query: 782 SKIINMILVEQE---VWEKDTSVSTLFVNNL-RKLGCGFQSKLFLLANSISSSRANTSTD 837
+ + ++E + + + F + L L C Q +L +
Sbjct: 579 ILLYAAPVTDREPLSMRHDQLARAATFTDCLILALPCHAQINAEML-----------KKE 627
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
G S + ++KP+ ++ L L + I ELP + + ++ VDDN
Sbjct: 628 GAS--ACLLKPVTATRLMPLLLEHCRL-----IHARELPEGDQSRMPM--TVMAVDDNPA 678
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L+ VV E G +A E +L P FD MDIQMP+MDG
Sbjct: 679 NLKLIGALLEDMVQHVVLCESGHQAVERAMLQP---FDIILMDIQMPDMDG 726
>gi|319781148|ref|YP_004140624.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317167036|gb|ADV10574.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 1545
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 170/563 (30%), Positives = 261/563 (46%), Gaps = 103/563 (18%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ E +++A AD AKS+FLA +SHEIRTPMNGVLGM ++L ++LD Q+ + SG
Sbjct: 979 LREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSDLDPKQKTFTDIIVKSG 1038
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
AL+++IN++LD +K+++G+L L+ FNL ++DV +L S ++++K +EL V + R+
Sbjct: 1039 NALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRVEPRL 1098
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
IGD GR RQI+TNL+GN++KFT++GH+ V V
Sbjct: 1099 ESLFIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVT------------------------ 1134
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
G P + L +SV DTG GIP E +F F Q
Sbjct: 1135 -------------------GERVPTGT------KLTISVTDTGIGIPEEKLKLVFEKFSQ 1169
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +R H GTG+GL+I+ LV M G+IG S GSTF F+ + + N
Sbjct: 1170 VDTSSTRRHEGTGLGLAITSRLVELMGGDIGVESAEGKGSTFWFSVTL----PRAGQQNG 1225
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSDQLQCLSQIA 779
Q++ P V+ G + L+VD + + + E ++ L+ L A
Sbjct: 1226 QRI--MPIDVT----GARVLIVDDNAVNRAILTEQMTSWTFDSCAAESGAEGLKVLIAAA 1279
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
+ ++ ++++ ++ E + V N G ++ S+ S ANTS +
Sbjct: 1280 AYGVPVDCVVLDYQMPEMSGAEMARIVRNT----AGLAGTPIIMLTSVDQSLANTSYRDL 1335
Query: 840 SIPSVIMKPLRSSM----LAASLQR-------------AMGVGNKGNIRNWELPSMSLRH 882
I + ++KP RSS+ L A++QR A V R R
Sbjct: 1336 GIDAQLIKPARSSVLLETLVATIQRHRHNTGGSDAQPLAADVAASNVTRPQPSAPSEQRA 1395
Query: 883 LLL-------------GRK--ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 927
LL G + IL+ +DN VN V L G V G+KA +
Sbjct: 1396 LLQPPSIRPRPPVAAGGDRLDILVAEDNEVNQMVFTQILGETGYGFEIVGNGRKALDAF- 1454
Query: 928 PPHQFDAC--FMDIQMPEMDGYE 948
+ + C MD+ MPEM+G E
Sbjct: 1455 --GRLNPCMILMDVSMPEMNGLE 1475
>gi|408788053|ref|ZP_11199776.1| two component sensor kinase/response regulator hybrid [Rhizobium
lupini HPC(L)]
gi|408486131|gb|EKJ94462.1| two component sensor kinase/response regulator hybrid [Rhizobium
lupini HPC(L)]
Length = 1144
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 172/565 (30%), Positives = 273/565 (48%), Gaps = 90/565 (15%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ L +AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L + LD Q+ + SG
Sbjct: 579 LQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDTRQKTFTDIIVKSG 638
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
AL+++IN++LD +K+E+G+++L +VSF+ ++DV+SL S + +K +EL V I+ V
Sbjct: 639 NALLTIINDILDFSKIEAGQMKLRSVSFDPAEAVEDVVSLLSSAALEKNIELVVRIAPSV 698
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
+IGD GRFRQI+TNL+GN++KFTE GH+ V ELS+
Sbjct: 699 FGKVIGDAGRFRQIVTNLVGNAVKFTETGHVLV----------------ELSA------- 735
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
+S+ A L + VED+G GIP + IF F Q
Sbjct: 736 -------------------------QSAEASEAILSLRVEDSGIGIPSDKLETIFDKFSQ 770
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +R H GTG+GL+I+ LVG G+I VS GS+F F +
Sbjct: 771 VDSSATRRHEGTGLGLAITVGLVGLFNGKIDVVSEVGKGSSFEVNIPF--------QMTE 822
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSDQLQCLSQIA 779
++ + P SV+ E ++ LV+D + ++ +Q GI VE L L +
Sbjct: 823 RRRDVPPLSVAIE--NIRVLVIDDNDVNRRILTEQLQSWGIDGHAVEGGPTGLAVLQEAV 880
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
+ I+ I+++ + ++ L V + F + S+ T +
Sbjct: 881 AVGLSIDAIILDYHM----PVMNGLDVVERIRADRRFDDIAIIFLTSMDVVGDETLFTDL 936
Query: 840 SIPSVIMKPLRSSMLAAS---------LQRA-----MGVGNKGNI----------RNWEL 875
++ + +MKP R+ +L ++ L+RA G + G+ R E+
Sbjct: 937 NVQAHLMKPARARLLRSTLFDVVRDVRLKRARPEAFAGASDGGSSRPEGPASEKKRRAEV 996
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
P++S+R +L+ +DN+VN V L++ G + V GKKA + +
Sbjct: 997 PTVSVRLRPSLIDVLVAEDNDVNQIVFTQILQQTGLRFLIVGNGKKAVQ-AWEEYNPAII 1055
Query: 936 FMDIQMPEMDGYEMLPCFESFLLIA 960
MD+ MP M+G++ + L A
Sbjct: 1056 LMDVSMPVMNGHQATQAIRTAELAA 1080
>gi|388602703|ref|ZP_10161099.1| hybrid sensory histidine kinase BarA [Vibrio campbellii DS40M4]
Length = 932
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 183/618 (29%), Positives = 296/618 (47%), Gaps = 98/618 (15%)
Query: 346 SMYGSNVSDDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH 404
S++ S + D ++ + N D R+ + R + K L + I + ++ H
Sbjct: 190 SVFASRLMHDVTQPITHMKNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYH 249
Query: 405 ------IFQATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGV 455
I QAT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV
Sbjct: 250 VEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGV 309
Query: 456 LGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515
+G ++ T+L +Q DY++T + S L+++IN++LD +K+E+GKL LE + F R
Sbjct: 310 IGFTRQMLKTQLSNSQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRES 369
Query: 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575
L++V++L + + +KG+E+ + + ++P+ L+GDP R +QI+TNL+GNSIKFTE+G+I +
Sbjct: 370 LEEVINLQATSAHEKGLEINLKVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDI 429
Query: 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLI 635
+V + + DS+E++
Sbjct: 430 SVEMRSQSGDSVELQ--------------------------------------------- 444
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
V DTG GI Q+++F F Q SISR +GGTG+GL I++ LV +M GEI
Sbjct: 445 ---FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLT 501
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ---GMKALVVDPRPIRAK 752
S + GSTF FT +S +M P S E + G + L+V+P A
Sbjct: 502 SRLHQGSTFWFTVRL----------HSTEM---PMSDLIEVELLTGKQLLLVEPNMQAAS 548
Query: 753 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 812
V++ + + GI V S L + + + L + ++ D SV+ ++ +++
Sbjct: 549 VTQQILSQEGILVTYRS----SLPENDENYDYVLLNLAANQTYD-DQSVAA-WIEQAKRM 602
Query: 813 G----CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG 868
G S LA+ + + + KPL L SL +
Sbjct: 603 APSVIMGTPSTELALADQVMNDHQ---------IQCLTKPLSRRKLLQSLITDHVETPQA 653
Query: 869 NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 928
I E P ++ R L +L VDDN NLK+ +A L+ V G++A L
Sbjct: 654 VIAPIE-PVVNER---LPLTVLAVDDNPANLKLISALLRERVETVTACSNGQQAVN-LAT 708
Query: 929 PHQFDACFMDIQMPEMDG 946
++D FMDIQMP MDG
Sbjct: 709 EKKYDLIFMDIQMPLMDG 726
>gi|419960003|ref|ZP_14476050.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
cloacae GS1]
gi|388605014|gb|EIM34237.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
cloacae GS1]
Length = 919
Score = 215 bits (548), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 167/532 (31%), Positives = 258/532 (48%), Gaps = 100/532 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + +EL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L + S DKG+EL + I + VP+ +
Sbjct: 343 TIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQTRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521
Query: 727 NQPN-----SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN V+ +GM+ V+P A+ + + ++V + S L+
Sbjct: 522 --PNVQTDGPVTGCLKGMRLAYVEPNAAAAQCTLDVLSSTPLEV-IYSPTFSALANDHYD 578
Query: 782 SKIINM-------ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 834
++ + + ++QE K S++ L L C Q L N
Sbjct: 579 ILLLGIPVTFTGELTMQQERLAKAASMTDYL---LLALPCHAQINAEELKN--------- 626
Query: 835 STDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDD 894
DG + + ++KPL ++ L +L + + LP + H L ++ VDD
Sbjct: 627 --DGAA--ACLLKPLTATRLLPALTEYC------RLTHQSLPLENDEH-KLPMTVMAVDD 675
Query: 895 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
N NLK+ L+ V G +A E QFD MDIQMP MDG
Sbjct: 676 NPANLKLIGVLLEDQVQHVELCTSGAEAVE-QAKQMQFDLILMDIQMPGMDG 726
>gi|167623151|ref|YP_001673445.1| hybrid sensory histidine kinase BarA [Shewanella halifaxensis
HAW-EB4]
gi|167353173|gb|ABZ75786.1| Hpt sensor hybrid histidine kinase [Shewanella halifaxensis
HAW-EB4]
Length = 929
Score = 215 bits (548), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 161/527 (30%), Positives = 246/527 (46%), Gaps = 81/527 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G L+ T L +QQDY+RT + S L+
Sbjct: 291 KKRAQEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHSSQQDYIRTIERSATNLL 350
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+GK+ LE + F+LR L++ ++L S +++K +E + + R+PE +
Sbjct: 351 SIINDILDFSKLEAGKMVLENIPFSLRETLEETVTLLSSSAREKELEFVIDVDSRIPEDV 410
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD RF QIITNL+GN+IKFT+KG + + + L E + V
Sbjct: 411 TGDAMRFSQIITNLVGNAIKFTDKGSVQLKLQLEE------------------IKEQKVH 452
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
RC + DTG GI + QS +F F Q S
Sbjct: 453 LRCE------------------------------IIDTGIGIDKQQQSSLFQAFGQADSS 482
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR GGTG+GL I+K L+ RM G+IG S P GSTF F+ N Q
Sbjct: 483 ISRRFGGTGLGLVITKRLINRMGGQIGCYSEPKQGSTFWFSLPL----------NISQYP 532
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+ +G L+ +P + +QRLG++ + + Q + + + +
Sbjct: 533 IHDTLPLATLEGKSILLFEPSNLSRHAIERMLQRLGLRATIAKNIKQLEFIVTQSNNVFD 592
Query: 787 MILVE-QEVWEKDTSVSTLFVNN------LRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
L+ + V +TL + L C Q ++F L + +
Sbjct: 593 FGLISCRAVAASHQPANTLKLAKSKIDYLLLISDCAEQEEVFSLVRPYVDKQLSMPVGER 652
Query: 840 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 899
+ S ++ P SS+++ +L P+ + R L +L VDDN NL
Sbjct: 653 LLSSSLLDP-HSSLISEALLPIDAT-----------PTPAKRENL---SVLAVDDNPANL 697
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K+ LK V + G+ A + L +D FMDIQMP DG
Sbjct: 698 KLIDTLLKELVTQVQVADNGELAVK-LAKERSYDLIFMDIQMPGTDG 743
>gi|407793745|ref|ZP_11140777.1| hybrid sensor histidine kinase [Idiomarina xiamenensis 10-D-4]
gi|407214444|gb|EKE84292.1| hybrid sensor histidine kinase [Idiomarina xiamenensis 10-D-4]
Length = 874
Score = 215 bits (548), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 148/527 (28%), Positives = 247/527 (46%), Gaps = 58/527 (11%)
Query: 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
M + K++AE A+ AK +FLA +SHEIRTP+N ++GM ++ + TELD Q Y+R +S
Sbjct: 194 AMEQAKEQAEQANQAKGEFLANMSHEIRTPINAIVGMANLCLKTELDAKQTRYLRVIDSS 253
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
KAL+ +IN++LD +K+++GKL +E + F+L +L + +F+ ++ DK +E + +
Sbjct: 254 SKALLGVINDILDFSKIDAGKLVMEQIPFDLEDVLTTLADMFAFRAYDKDLEFIINLPAS 313
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P L+GDP R Q++ NL+ N+IKFTE G I V V L+++ D +
Sbjct: 314 IPTLLLGDPLRLNQVLVNLVSNAIKFTEDGEINVGVTLLDKSEDKV-------------- 359
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
W L +SV DTG G+ E ++ +F F
Sbjct: 360 ----------W------------------------LRISVTDTGIGMDEEQRANLFKAFT 385
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q S +R +GGTG+GL+IS+ L+ M G+IG S GSTF S + H+
Sbjct: 386 QADTSTTRKYGGTGLGLAISRRLIQLMHGDIGVTSAAGQGSTFYIELTLPLQDSQDSSHH 445
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
++ Q + L +D ++ + G+QV+V Q L+ + +
Sbjct: 446 --------QNLLKRLQNTRILAIDDNLSTREMLYEMLSAYGMQVKVCRTAEQGLALLNAA 497
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
++ V W F + + ++A+ + + +
Sbjct: 498 AEAEQPYQVALVDWRLPGMDGIEFCQQVTQNSQLHDKPKLIIASGYYAEEMSDQAHRAGV 557
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
I KP ++ LA SL + G +G + + + + + IL+V+DN +N V
Sbjct: 558 ADFITKPYTAATLARSLTSVLS-GQQGKLGSEQPSRQQIPEQIRQAPILVVEDNEINQHV 616
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
A L +G V E G++A + + + MDIQMP MDGY+
Sbjct: 617 ARELLTGHGFQVDIAENGQQAVDKVQ-QQSYAMVLMDIQMPVMDGYK 662
>gi|392535067|ref|ZP_10282204.1| sensor protein [Pseudoalteromonas arctica A 37-1-2]
Length = 1120
Score = 215 bits (548), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 169/563 (30%), Positives = 264/563 (46%), Gaps = 85/563 (15%)
Query: 395 ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 454
++ +A+L+G + ++ RI E ++ K+ AE A AKS+FLA++SHEIRTPMNG
Sbjct: 571 LIAVAALIGSL-HSSQQRI----ETEQKLVAAKETAEQAVEAKSEFLASMSHEIRTPMNG 625
Query: 455 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514
VLGML+++ T+LD+ Q+ ++ AQ+S ++L+++IN++LD +K+E+GKL++E V FNL
Sbjct: 626 VLGMLNIIKQTQLDLQQKHHIELAQSSAQSLLNIINDILDFSKIEAGKLDIENVQFNLPR 685
Query: 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 574
+L +V+ F+ K + +L + + +I DP R RQI+ NL+GN++KFT G +
Sbjct: 686 LLGEVVESFALKVEQNNTKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTIDGEVV 745
Query: 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 634
+T + E DGS
Sbjct: 746 ITAKVDETT-------------------------------------DGSF---------- 758
Query: 635 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 694
L S+ DTG GI + Q+ +F F Q S +R GGTG+GL+I K L M GE+
Sbjct: 759 --LQCSIIDTGIGIDPKKQASLFDSFTQADASTTRQFGGTGLGLAIVKQLCELMNGEVSV 816
Query: 695 VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 754
S+ GSTF+FT S + S + N+ L++D + A +
Sbjct: 817 NSMQGEGSTFSFTIQIQPRLSKEQDLPSHLIKNK-----------HILIIDECSLNANTA 865
Query: 755 RYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814
+ G +V + D L+ + + + ILV+ +EK + N +
Sbjct: 866 SKQLTVWGAKVNCIHDYLEVDDYLNNVTTHPEAILVDYYFFEKAPQTHITALKNFINM-- 923
Query: 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 874
KL L+A S S G+ + +I KPL S L SL N I +
Sbjct: 924 -HSCKLVLMAP--MSYSPEESKVGMEVDCMIFKPLTPSDLFDSLT------NDKYIEQQQ 974
Query: 875 LPSMSLRHLLLG-------RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 927
+ L ++L+V+DN +N VA+A LK+ G E G +A L
Sbjct: 975 QQAQLQNKLTKAPVLDSSEPQLLLVEDNKINQVVASALLKQAGVTFDIAENGLEAIVKLN 1034
Query: 928 PPH--QFDACFMDIQMPEMDGYE 948
+ MD QMPEMDGY+
Sbjct: 1035 AKQGKPYKLVLMDCQMPEMDGYQ 1057
>gi|429105970|ref|ZP_19167839.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
malonaticus 681]
gi|426292693|emb|CCJ93952.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
malonaticus 681]
Length = 919
Score = 215 bits (548), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 167/531 (31%), Positives = 258/531 (48%), Gaps = 98/531 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + + VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRTTLDEVVTLLAHSAHDKGLELTISVRHDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFT+ G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S P+ GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ + GM+ V+ AK +R + + V V S L L Q
Sbjct: 522 --PNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLANTPLTV-VYSPDLATLPQAHYD 578
Query: 782 SKIINMILVEQEVW----EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 837
+ + ++E ++ +TL + L C Q +L +
Sbjct: 579 ILLYAAPVTDREPLSMRHDQLARAATLTDCLILALPCHAQINAEML-----------KKE 627
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
G S + ++KP+ ++ L L + I ELP + + ++ VDDN
Sbjct: 628 GAS--ACLLKPVTATRLMPLLLEHCRL-----IHARELPEGDQSRMPM--TVMAVDDNPA 678
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L+ VV E G +A E +L P FD MDIQMP+MDG
Sbjct: 679 NLKLIGALLEDMVQHVVLCESGHQAVERAMLQP---FDIILMDIQMPDMDG 726
>gi|307719098|ref|YP_003874630.1| two-component system sensor histidine kinase [Spirochaeta
thermophila DSM 6192]
gi|306532823|gb|ADN02357.1| two-component system, sensor histidine kinase [Spirochaeta
thermophila DSM 6192]
Length = 776
Score = 215 bits (548), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 166/537 (30%), Positives = 264/537 (49%), Gaps = 108/537 (20%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
+KS+FLA +SHEIRTP++ +LGM ++L DT LD Q+DYV+ + SG+AL++LIN++LD
Sbjct: 129 SKSRFLANMSHEIRTPLHTILGMTELLEDTRLDEEQRDYVQQIRFSGEALLALINDILDY 188
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+E+GKL +E + F+L +++ + + S ++ K +E+ V I + VP + GDP R RQ
Sbjct: 189 SKIEAGKLPMEIIEFDLYEVVEQAVGMVSLQAHKKHLEVVVDIGEEVPRKVKGDPLRIRQ 248
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
I+ NL N++KFTEKGH+F V LV+E + +W F
Sbjct: 249 ILVNLANNAVKFTEKGHVFCRVQLVQE------------------------RKGVAWVAF 284
Query: 616 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
+VEDTG GIP + R+F F Q+ S +R GGTG
Sbjct: 285 ------------------------TVEDTGIGIPENKKHRLFRVFSQIDESTTRRFGGTG 320
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735
+GL+ISK LV MKGEIG S GS+F F S +P E
Sbjct: 321 LGLAISKSLVEMMKGEIGVRSKEGEGSSFWFLLPLPIVESY-----------EPPVSLGE 369
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSKIINMILVE- 791
+ L+V+ P+ KV ++QR +++ S + L+ + + A +I +++LV+
Sbjct: 370 VGSL--LLVEDYPLTRKVLHRYLQRYFPRIDEASTGAEALRKMRERAERGEIYDLVLVDL 427
Query: 792 ----QEVWE------KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
+ W+ D S++ + + +G G ++K+ LL
Sbjct: 428 TLPGMDGWQFASEVNADRSINDTRMVLMSPMGEGAEAKMKLLK---------------WF 472
Query: 842 PSVIMKPLRSSMLAASLQRAMG--------VGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
+ + KP+R L ++ + + +G E P+ + +L IL+ +
Sbjct: 473 DAYLAKPVRKDDLYRTVAKVVNEEMELEAVEEAEGTEGGEETPADAGNYL-----ILVAE 527
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDGYE 948
D+ VN ++ L R G V GK+A E L + P D FMD+QMPEM+GY+
Sbjct: 528 DHIVNQELFLTILSRLGYRVELAGNGKEAVEKGLALKP---DLIFMDVQMPEMNGYD 581
>gi|146312879|ref|YP_001177953.1| hybrid sensory histidine kinase BarA [Enterobacter sp. 638]
gi|145319755|gb|ABP61902.1| Hpt sensor hybrid histidine kinase [Enterobacter sp. 638]
Length = 918
Score = 215 bits (548), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 170/548 (31%), Positives = 254/548 (46%), Gaps = 132/548 (24%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + +EL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD++++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEIVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I V V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTENGNIDVLVEKRAISNNKLQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ L+ M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQKLLKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSVSSE-----FQGMKALVVDPRPIRAK-----------------------VSRYHI 758
PN V+ +GM+ V+P A+ V Y I
Sbjct: 522 --PNVVTDGPMTHCLRGMRLAYVEPNAAAAQSTLDVLSTTPLEVIYSPTFSALAVDHYDI 579
Query: 759 QRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818
+GI V + + ++QE K S++ L L C Q
Sbjct: 580 LLMGIPVTFTGE-----------------LTMQQERLAKAASMTDYL---LLALPCHAQL 619
Query: 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L N DG + + ++KPL ++ L +L I + LP
Sbjct: 620 NAEELKN-----------DGAA--ACLLKPLTATRLLPALTEYC------RINHHALPVA 660
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938
H L ++ VDDN NLK+ L+ V G +A E QFD MD
Sbjct: 661 HDDH-KLPMSVMAVDDNPANLKLIGVLLEDQVQHVELCSSGAQAVE-HAKQMQFDLILMD 718
Query: 939 IQMPEMDG 946
IQMP+MDG
Sbjct: 719 IQMPDMDG 726
>gi|428218985|ref|YP_007103450.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427990767|gb|AFY71022.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 1627
Score = 215 bits (548), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 170/559 (30%), Positives = 258/559 (46%), Gaps = 105/559 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++AEAA+ AKS+FLA +SHEIRTPMN V+GM +LMDT+L Q+D+ T + S AL+
Sbjct: 914 KQEAEAANKAKSEFLANMSHEIRTPMNAVIGMSGLLMDTQLSPEQRDFAETIRNSADALL 973
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+ESGKL LE F L ++ + L + + +KG+E+A ++ +VP +
Sbjct: 974 TIINDILDFSKIESGKLTLEEQPFALLDCIEATVDLMAAQVANKGLEIATWVDTQVPSVI 1033
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD R RQI+ NL+GN+IKFTE+G I ++ E + E+
Sbjct: 1034 KGDVTRLRQILVNLLGNAIKFTEQGEIIISAIARELTAEQYEIH---------------- 1077
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+V+DTG GI E+ +R+F F Q S
Sbjct: 1078 --------------------------------FAVKDTGIGIAPESMNRLFESFSQADTS 1105
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ-- 724
I+R +GGTG+GL+IS+ L M G + S + T T A + H+ +Q
Sbjct: 1106 ITRKYGGTGLGLAISQKLCRLMGGNMWVESNGVVAGTPTTDAWRSLWQDSPILHDRKQEH 1165
Query: 725 --------------MNNQPNSVSSEFQ---GMKALVVDPRPIRAKVSRYHIQRLGIQVEV 767
+NN+ +S + G + LVVD ++ R Q +Q +
Sbjct: 1166 PGTTFYFSITTAKVLNNELEKLSHQTHSLIGKRLLVVDDNATNCQILRLQAQFWQMQTQT 1225
Query: 768 VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG--------FQSK 819
+D Q LS IL + E D +V + + L L +
Sbjct: 1226 FNDPDQALS-----------ILKQSPRSEFDLAVLDMQMPGLDGLSLAIAIAQLEHYADL 1274
Query: 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS 879
++ +S S + + I + + KP++ S L +L +A +R +S
Sbjct: 1275 PIIILSSASDLLSPSDRQKYPIVNFLRKPVKQSQLYNALLQA--------VRPEISSPVS 1326
Query: 880 LRHLL----------LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 929
LR L L +IL+ +DN VN KVA KR G V G +A +
Sbjct: 1327 LRTKLTNNYQNLATDLPLRILLAEDNLVNQKVALNMFKRLGYRADVVANGLEAVTTVQQL 1386
Query: 930 HQFDACFMDIQMPEMDGYE 948
H +D FMD+QMPEMDG E
Sbjct: 1387 H-YDVVFMDMQMPEMDGLE 1404
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 868 GNIRNWELPSMSLR-HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 926
+ N EL +S + H L+G+++L+VDDN N ++ + + +A +L
Sbjct: 1177 AKVLNNELEKLSHQTHSLIGKRLLVVDDNATNCQILRLQAQFWQMQTQTFNDPDQALSIL 1236
Query: 927 M--PPHQFDACFMDIQMPEMDGYEM 949
P +FD +D+QMP +DG +
Sbjct: 1237 KQSPRSEFDLAVLDMQMPGLDGLSL 1261
>gi|254482907|ref|ZP_05096143.1| response regulator receiver domain protein [marine gamma
proteobacterium HTCC2148]
gi|214036779|gb|EEB77450.1| response regulator receiver domain protein [marine gamma
proteobacterium HTCC2148]
Length = 998
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 174/578 (30%), Positives = 286/578 (49%), Gaps = 101/578 (17%)
Query: 389 ISTSIGILVIASLVGHIFQA--TVNRIA-KVEEDYHGMMELKKKAEAADVAKSQFLATVS 445
I+ ++ +L++ SL+ IF+ + +R+A ++E + K AKS+FL+ +S
Sbjct: 301 IAAAVTLLLVISLIVVIFRGYRSKHRLALQLEGKSRELGVANDKLVQVTEAKSRFLSAMS 360
Query: 446 HEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505
HEIRTPMNGV+GM ++L T+L Q +YV S L+ LIN++LD +K+E+G+L+L
Sbjct: 361 HEIRTPMNGVIGMAELLEGTDLTNQQGEYVSLIIKSADTLLGLINDILDFSKIEAGRLDL 420
Query: 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSI 565
E + FNLR IL D L + ++ +K +EL +I +P+ LIGDP R RQ+I NL+GN+I
Sbjct: 421 EHIPFNLRDILGDTLQTLALRANEKDIELTFHIPPDIPDKLIGDPLRLRQVIVNLVGNAI 480
Query: 566 KFTEKGHIFVTVYLVEEVVDS-IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624
KFTE G + V + L++ + DS I++ E+ SG ++D S K FK F+Q
Sbjct: 481 KFTEVGEVAVDL-LLQSISDSDIQLVFEVRD-----SGIGISDAQQS-KVFKAFDQ---- 529
Query: 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYL 684
DT S +R GGTG+GL+I++ L
Sbjct: 530 -----------------ADT---------------------STTRQFGGTGLGLAIARQL 551
Query: 685 VGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVS---SEFQGMKA 741
M G + S N GSTF+F+A FG + QP +V+ E +G+ A
Sbjct: 552 TEMMGGTMAVRSKLNEGSTFSFSASFG-------------LPEQPETVALEPQELKGLNA 598
Query: 742 LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--------ASGSKIINMILVEQE 793
LVVD + + G+ VV + L ++ A ++++++ +
Sbjct: 599 LVVDDNSTNRMILEELLVNWGMSACVVDSGEKALEELKRAEDNNMAFAVALLDVMMPNMD 658
Query: 794 VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS--TDGVSIPSVIMKPLRS 851
+E +R+ ++++ +L S+ R+NT + + I V++KP +
Sbjct: 659 GFE--------LAARIRQRPKQNKTRILMLT---SAGRSNTEQISQRLDISRVLLKPTKQ 707
Query: 852 SMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG---RKILIVDDNNVNLKVAAAGLKR 908
L ++ A+GV ++ +++L+ G R++L+V+DN VNLKVA L++
Sbjct: 708 FDLQRAITDALGVTTSHTVK-------KVQNLVPGPEARRVLLVEDNPVNLKVALELLRK 760
Query: 909 YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
G + + V R FD MD+ MP MDG
Sbjct: 761 RGHS-IEVARNGAEAVEAAAKEDFDVVLMDVHMPVMDG 797
Score = 43.9 bits (102), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ----FDACFMDI 939
L G L+VDDN+ N + L +G + V+ G+KA E L F +D+
Sbjct: 593 LKGLNALVVDDNSTNRMILEELLVNWGMSACVVDSGEKALEELKRAEDNNMAFAVALLDV 652
Query: 940 QMPEMDGYEM 949
MP MDG+E+
Sbjct: 653 MMPNMDGFEL 662
>gi|429081627|ref|ZP_19144729.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
condimenti 1330]
gi|426549762|emb|CCJ70770.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
condimenti 1330]
Length = 920
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 166/527 (31%), Positives = 260/527 (49%), Gaps = 90/527 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + + VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRNTLDEVVTLLAHSAHDKGLELTISVRHDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFT+ G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S P+ GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN+++ GM+ V+ AK +R + + VE S +L L +
Sbjct: 522 --PNALADRHATDMLAGMRLAYVEKNEAAAKSTRDLLAHTPLTVE-YSPELATLPEAH-- 576
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
+++L V +++ T+ + L + + L + +G S
Sbjct: 577 ---YDILLYAAPVTDREP--LTMRHDQLARAATLADCLILALPCHAQINAEMLKKEGAS- 630
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KP+ ++ L L + K N R ELP L + ++ VDDN NLK+
Sbjct: 631 -ACLLKPVTATRLLPLL---LEQCRKKNAR--ELPGNGQGKLEM--TVMAVDDNPANLKL 682
Query: 902 AAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDG 946
A L+ VV + G +A E L P FD MDIQMP+MDG
Sbjct: 683 IGALLEDLVQRVVLCDSGHQAVERATLQP---FDIILMDIQMPDMDG 726
>gi|423957740|ref|ZP_17735483.1| his Kinase A domain protein [Vibrio cholerae HE-40]
gi|423985725|ref|ZP_17739039.1| his Kinase A domain protein [Vibrio cholerae HE-46]
gi|408656157|gb|EKL27255.1| his Kinase A domain protein [Vibrio cholerae HE-40]
gi|408663568|gb|EKL34437.1| his Kinase A domain protein [Vibrio cholerae HE-46]
Length = 927
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 175/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N +P L L
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSVPKPQADKLPLC- 666
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-IRQFDIILMDIQMPHMDG 723
>gi|417821767|ref|ZP_12468381.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE39]
gi|340039398|gb|EGR00373.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
HE39]
Length = 916
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 175/599 (29%), Positives = 280/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 198 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 257
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 258 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 317
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 318 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 377
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 378 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 422
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 423 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 449
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 509
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 510 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 558
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 559 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 610
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N +P L L
Sbjct: 611 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSVPKPQADKLPLC- 655
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP MDG
Sbjct: 656 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-IRQFDIILMDIQMPHMDG 712
>gi|284036668|ref|YP_003386598.1| histidine kinase [Spirosoma linguale DSM 74]
gi|283815961|gb|ADB37799.1| histidine kinase [Spirosoma linguale DSM 74]
Length = 1407
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 163/529 (30%), Positives = 252/529 (47%), Gaps = 74/529 (13%)
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
+ + +AE A+ AKS FLAT+SHEIRTP+NGV+GM +L DT L Q++Y T ++ G++
Sbjct: 882 QARLEAETANKAKSVFLATMSHEIRTPLNGVIGMTALLEDTPLSEEQREYAHTIRSCGES 941
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L+ +IN++LD +K+ESGK+ELE LR+ L++VL +F+GK+ G++L I VP
Sbjct: 942 LLGVINDILDFSKIESGKMELEQQPIELRSCLEEVLDMFAGKAGQTGLDLIYQIDPLVPP 1001
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 604
++GD R RQI+ NL+GN++KFT +G + V V LV D
Sbjct: 1002 QILGDSLRLRQILINLVGNAVKFTHQGEVMVGVQLVAVRPDQA----------------- 1044
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
+ L +V DTG GIP ++F F QV
Sbjct: 1045 ------------------------------VELAFTVRDTGIGIPGSKIGQLFKAFSQVD 1074
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
S SR +GGTG+GL IS+ L+ M G I S G+ F FT V G Q
Sbjct: 1075 SSHSRQYGGTGLGLIISQRLIELMGGVIRVESEVGKGTAFRFTLVCQTGEEKKPAAYGPQ 1134
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 784
S G L+VD R ++ ++ + + L IA
Sbjct: 1135 ---------SAIAGKSVLIVDDNGASQSALRTQLECWHLRPTLAGSGREALVIIAQHGP- 1184
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
++I+++Q++ E D + ++ + + +L + + R D S +
Sbjct: 1185 FDLIIIDQQMPEMDG------IELAGEIKRSYPTIPLILLSWVGDQRRKKHADLFS--GM 1236
Query: 845 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR----KILIVDDNNVNLK 900
I KP+ + L S+Q+A+ +++ + S S + R +ILI +DN +N+K
Sbjct: 1237 ITKPIHYNHLGQSVQQALTPQENTSLQPTDR-SKSAYKVDFARQYPLQILIAEDNPINVK 1295
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQ-FDACFMDIQMPEMDGYE 948
+ L + G + G+ E+L H+ FD MDIQMPEMDG E
Sbjct: 1296 LLVRVLNKLGYSPTVANNGQ---EVLSRLHEGFDLILMDIQMPEMDGLE 1341
Score = 41.2 bits (95), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
+ G+ +LIVDDN + L+ + G++A ++ FD +D QMPE
Sbjct: 1137 IAGKSVLIVDDNGASQSALRTQLECWHLRPTLAGSGREALVIIAQHGPFDLIIIDQQMPE 1196
Query: 944 MDGYEM 949
MDG E+
Sbjct: 1197 MDGIEL 1202
>gi|359440163|ref|ZP_09230087.1| hypothetical protein P20429_0443 [Pseudoalteromonas sp. BSi20429]
gi|358037998|dbj|GAA66336.1| hypothetical protein P20429_0443 [Pseudoalteromonas sp. BSi20429]
Length = 1120
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 169/563 (30%), Positives = 264/563 (46%), Gaps = 85/563 (15%)
Query: 395 ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 454
++ +A+L+G + ++ RI E ++ K+ AE A AKS+FLA++SHEIRTPMNG
Sbjct: 571 LIAVAALIGSL-HSSQQRI----ETEQKLVAAKETAEQAVEAKSEFLASMSHEIRTPMNG 625
Query: 455 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514
VLGML+++ T+LD+ Q+ ++ AQ+S ++L+++IN++LD +K+E+GKL++E V FNL
Sbjct: 626 VLGMLNIIKQTQLDLQQKHHIELAQSSAQSLLNIINDILDFSKIEAGKLDIENVQFNLPR 685
Query: 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 574
+L +V+ F+ K + +L + + +I DP R RQI+ NL+GN++KFT G +
Sbjct: 686 LLGEVVESFALKVEQNNTKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTIDGEVV 745
Query: 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 634
+T + E DGS
Sbjct: 746 ITAKVDETT-------------------------------------DGSF---------- 758
Query: 635 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 694
L S+ DTG GI + Q+ +F F Q S +R GGTG+GL+I K L M GE+
Sbjct: 759 --LQCSIIDTGIGIDPKKQASLFDSFTQADTSTTRQFGGTGLGLAIVKQLCELMNGEVSV 816
Query: 695 VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 754
S+ GSTF+FT S + S + N+ L++D + A +
Sbjct: 817 NSMQGEGSTFSFTIQIQPRLSKEQDLPSHLIKNK-----------HILIIDECSLNANTA 865
Query: 755 RYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814
+ G +V + D L+ + + + ILV+ +EK + N +
Sbjct: 866 SKQLTVWGAKVNCIHDYLEVDDYLNNVTTHPEAILVDYYFFEKAPQTHITALKNFINM-- 923
Query: 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 874
KL L+A S S G+ + +I KPL S L SL N I +
Sbjct: 924 -HSCKLVLMAP--MSYSPEESKVGMEVDCMIFKPLTPSDLFDSLT------NDKYIEQQQ 974
Query: 875 LPSMSLRHLLLG-------RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 927
+ L ++L+V+DN +N VA+A LK+ G E G +A L
Sbjct: 975 QQAQLQNKLTKAPVLDSSEPQLLLVEDNKINQVVASALLKQAGVTFDIAENGLEAIVKLN 1034
Query: 928 PPH--QFDACFMDIQMPEMDGYE 948
+ MD QMPEMDGY+
Sbjct: 1035 AKQGKPYKLVLMDCQMPEMDGYQ 1057
>gi|261211547|ref|ZP_05925835.1| BarA sensory histidine kinase [Vibrio sp. RC341]
gi|260839502|gb|EEX66128.1| BarA sensory histidine kinase [Vibrio sp. RC341]
Length = 925
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 176/601 (29%), Positives = 284/601 (47%), Gaps = 104/601 (17%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L ++ I + ++ H I QAT + +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQTDY 328
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
+S D+I+L V DTG GI Q+
Sbjct: 434 ---------------------------------RSLRDDVIDLQFMVRDTGIGISERQQA 460
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +++Q +N++ L+++P A + + + + G++V + +
Sbjct: 521 LPVNDGYDAQLLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVIYRSAIPE 569
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ Q + + SK N +V E+W K T + G S LA+ +
Sbjct: 570 EEQSYDYVLLNLAPSKETNYTMV--ELWVKRALAMT------HNVIVGVPSTELALADRL 621
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASL--QRAMGVGNKGNIRNWELPSMSLRHLLL 885
I KPL L +L Q+ + + + P L L
Sbjct: 622 MQHYP---------VKCISKPLSRKKLLQTLAAQQPLSLHSAQ-------PKPQADKLPL 665
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
++ VDDN NLK+ A L+ V+ G++A E H FD MDIQMP MD
Sbjct: 666 C--VMAVDDNPANLKLITALLQERVECVIACASGQEAIEQAQERH-FDIILMDIQMPHMD 722
Query: 946 G 946
G
Sbjct: 723 G 723
>gi|429116659|ref|ZP_19177577.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
sakazakii 701]
gi|449307057|ref|YP_007439413.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii SP291]
gi|426319788|emb|CCK03690.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
sakazakii 701]
gi|449097090|gb|AGE85124.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii SP291]
Length = 919
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 167/531 (31%), Positives = 259/531 (48%), Gaps = 98/531 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + + DKG+EL + + VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFT+ G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S P+ GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ + GM+ V+ AK +R + + V V S L L Q
Sbjct: 522 --PNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLANTPLTV-VYSPDLASLPQAHYD 578
Query: 782 SKIINMILVEQE---VWEKDTSVSTLFVNNL-RKLGCGFQSKLFLLANSISSSRANTSTD 837
+ + ++E + + + F + L L C Q +L +
Sbjct: 579 ILLYAAPVTDREPLSMRHDQLARAATFTDCLILALPCHAQINAEML-----------KKE 627
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
G S + ++KP+ ++ L L + I ELP + + ++ VDDN
Sbjct: 628 GAS--ACLLKPVTATRLMPLLLEHCRL-----IHARELPEGDQSRMPM--TVMAVDDNPA 678
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L+ VV E G +A E +L P FD MDIQMP+MDG
Sbjct: 679 NLKLIGALLEDMVQHVVLCESGHQAVERAMLQP---FDIILMDIQMPDMDG 726
>gi|440684403|ref|YP_007159198.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
gi|428681522|gb|AFZ60288.1| multi-sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
Length = 1382
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 173/559 (30%), Positives = 273/559 (48%), Gaps = 77/559 (13%)
Query: 401 LVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 460
VG I T +IA+ + + K++AE A++ K +FLAT+SHEIRTPMN V+GM
Sbjct: 694 FVGIITDITDKKIAEEQ-----LKSAKEEAEIANLTKGEFLATMSHEIRTPMNAVIGMTG 748
Query: 461 MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 520
+L+DT+L Q ++ + SG A+++LIN++LD +K+ESGKLE+E FNLR L++ L
Sbjct: 749 LLLDTQLTPQQLEFAEIIRNSGDAMLTLINDILDFSKIESGKLEIEEQIFNLRTCLEESL 808
Query: 521 SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580
L + K+ +KG+ELA + E + GD R RQI+ NL+ N+IKFT G + ++V
Sbjct: 809 DLVAPKASEKGLELAYLMYPETYEVISGDVTRLRQILVNLLSNAIKFTNSGEVILSV--T 866
Query: 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 640
++ D + ++E S +N + L + +
Sbjct: 867 SQIKD--QSDSEFISQQN---------------------------------SQLYEIKFT 891
Query: 641 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700
V+DTG GIP + R+F PF QV S +R +GGTG+GL ISK L M G++ S
Sbjct: 892 VKDTGIGIPEDKMHRLFKPFSQVDASTTRHYGGTGLGLVISKRLTELMGGKMWVESTVGQ 951
Query: 701 GSTFTFTAV---FGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 757
GS F FT V G + H+ ++N+ + L+VD +
Sbjct: 952 GSNFIFTIVSPFVGKSDIKYDYHHHHSIHNK-----------RLLIVDDNINNRQALILQ 1000
Query: 758 IQRLG-IQVEVVS--DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814
Q G + V S + L+ L + I++M + E + + +RKL
Sbjct: 1001 SQSFGMVGVSAASGKEALKYLQEQQFDIAILDMQMPEMD--------GLTLASEIRKLNN 1052
Query: 815 GFQSKLFLLANSISSSRANTSTDGVSIPSV--IMKPLRSSML---AASLQRAMGVGNKGN 869
+ L +L SI ++NT+ +++ V + KP++ + L ++ + V K N
Sbjct: 1053 CERLPLVMLT-SIGDGQSNTNYQNLNLEFVAYLTKPIKKANLLNILINISKNNVVMPKEN 1111
Query: 870 IRNWELPSMSLRHLL--LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 927
+ S H+ + KIL+ +DN VN KVA L+R G G + + +
Sbjct: 1112 TYQ-DTQSKFDSHMAEKIPLKILVAEDNVVNQKVAINILQRLGYRADVAANGLEVL-VAL 1169
Query: 928 PPHQFDACFMDIQMPEMDG 946
+D MD+QMPEMDG
Sbjct: 1170 RRQSYDVVLMDLQMPEMDG 1188
>gi|260775203|ref|ZP_05884101.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
gi|260608904|gb|EEX35066.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
Length = 927
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 195/660 (29%), Positives = 304/660 (46%), Gaps = 111/660 (16%)
Query: 306 GYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTL-N 364
GY+ D+ SL +L Q IF + + +++ + D +S + N
Sbjct: 155 GYIAVELDLSSL------RLQQYQEIFSAFLVLLSGLGLSAVFAYRLMHDVTRPISHMKN 208
Query: 365 FGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVEE 418
D R+ + R + K L ++ I + ++ H I QAT + +E+
Sbjct: 209 MVDRIRRGHLDVRIEGKMHGELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQ 268
Query: 419 DYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 475
+EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY+
Sbjct: 269 LEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTKLTNSQADYL 328
Query: 476 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 535
+T + S L+++IN++LD +K+E+GKL LE + F + L++V+SL + + +KG+EL
Sbjct: 329 QTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFQETLEEVVSLQATSAHEKGLELT 388
Query: 536 VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 595
+ + ++P L+GDP R +Q++TNL+GNSIKFTE+G+I ++V L + D++E++
Sbjct: 389 LKVDPKIPAGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVELRSQKEDAVELQ----- 443
Query: 596 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 655
V DTG GI Q++
Sbjct: 444 -------------------------------------------FMVRDTGIGISERQQAQ 460
Query: 656 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS 715
+F F Q SISR +GGTG+GL I++ LV +M GEI S + GSTF FT
Sbjct: 461 LFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRL----- 515
Query: 716 TSNEHNSQQMNNQPNSVSSEFQGMKA---LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 772
NS M P S E Q ++ L+V+P A V++ + + G+ V S
Sbjct: 516 -----NSTDM---PVSDLLETQVLRQRTLLLVEPNMQAASVTQQTLVQEGLIVTYRSSIP 567
Query: 773 QCLSQIA------SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 826
+ SQ + +K LVEQ W K C Q + + + +
Sbjct: 568 EEASQFDYVLLNLAPNKTNEAELVEQ--WVKQAQ------------QCAPQVVVGIPSTA 613
Query: 827 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG 886
++ S T V I KPL L +L N+ ++ E+ L L
Sbjct: 614 LALSDHLIQTHHV---HCITKPLSRRKLLQTL-----AANQESLPMVEIEPAYNETLPL- 664
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ +A L+ VV G A H FD MDIQMP MDG
Sbjct: 665 -TVMAVDDNPANLKLISALLQERVEKVVTCTNGLDAVAQAETQH-FDIILMDIQMPHMDG 722
>gi|389839777|ref|YP_006341861.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii ES15]
gi|387850253|gb|AFJ98350.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii ES15]
Length = 919
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 167/531 (31%), Positives = 259/531 (48%), Gaps = 98/531 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + + DKG+EL + + VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFT+ G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S P+ GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ + GM+ V+ AK +R + + V V S L L Q
Sbjct: 522 --PNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLANTPLTV-VYSPDLASLPQAHYD 578
Query: 782 SKIINMILVEQE---VWEKDTSVSTLFVNNL-RKLGCGFQSKLFLLANSISSSRANTSTD 837
+ + ++E + + + F + L L C Q +L +
Sbjct: 579 ILLYAAPVTDREPLSMRHDQLARAATFTDCLILALPCHAQINAEML-----------KKE 627
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
G S + ++KP+ ++ L L + I ELP + + ++ VDDN
Sbjct: 628 GAS--ACLLKPVTATRLMPLLLEHCRL-----IHARELPEGDQSRMPM--TVMAVDDNPA 678
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L+ VV E G +A E +L P FD MDIQMP+MDG
Sbjct: 679 NLKLIGALLEDMLQHVVLCESGHQAVERAMLQP---FDIILMDIQMPDMDG 726
>gi|395762634|ref|ZP_10443303.1| multi-sensor hybrid histidine kinase [Janthinobacterium lividum
PAMC 25724]
Length = 1184
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 160/557 (28%), Positives = 255/557 (45%), Gaps = 81/557 (14%)
Query: 398 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
+ LVG I + + A+ ++ K+ AE+A +KS+FLA +SHEIRTPMNG+LG
Sbjct: 498 LQGLVGTIVDISSQKAAE-----RALLLAKEVAESASRSKSEFLANMSHEIRTPMNGILG 552
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
M D+++D+ELD+ Q+ Y+ +AS AL+ +IN++LD +K+E+G L LE++ FNLR ++
Sbjct: 553 MTDLVLDSELDIHQRKYLEIVKASADALLGIINDILDFSKIEAGMLTLESIPFNLRQLMQ 612
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
+ + + ++Q G+EL + + +P+TL+GDPGR RQ++TNL GN+IKFT +G + V+
Sbjct: 613 ESMRALAVRAQVSGLELVLDVDPALPQTLLGDPGRLRQVLTNLAGNAIKFTPRGEVTVSA 672
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 637
L C K +
Sbjct: 673 RL---------------------------GACDDGKA---------------------QV 684
Query: 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697
+ V DTG GI + Q +F F Q S +R GGTG+GLSI++ LV M G IG S
Sbjct: 685 QLCVRDTGIGIAADMQEAVFDAFQQEDGSTTRRFGGTGLGLSITRRLVSMMGGSIGLSSE 744
Query: 698 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP--NSVSSEFQGMKALVVDPRPIRAKVSR 755
GS+FT G +QP + G L++D + R
Sbjct: 745 LGKGSSFTVDLALNIG------------EDQPCLTPPDASLTGRTLLLIDDNSSSLSILR 792
Query: 756 YHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL----FVNNLRK 811
+ G V + L S + +I+ D ++ + + L
Sbjct: 793 QIFEGSGAAVTACTSGEAALEHCRSALPVDCIIM--------DFAMPGMNGFGTASALAA 844
Query: 812 LGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR 871
L + + +L++S + + A + + I ++KP L A +G
Sbjct: 845 LPHWSEVPIVMLSSSGNLADAARCRE-LGIEGYLLKPASPEELLAITMSVLGTCRGAPSA 903
Query: 872 NWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 931
+ +R IL+V+DN +N ++A L G V G++A + H
Sbjct: 904 TPAVTQHGVREGTPSLDILLVEDNAMNRELATVLLSHAGHRVTHAANGQQALDCQASGH- 962
Query: 932 FDACFMDIQMPEMDGYE 948
FD MD+QMPEM G+E
Sbjct: 963 FDMILMDLQMPEMGGFE 979
>gi|163760978|ref|ZP_02168056.1| two component sensor kinase/response regulator hybrid [Hoeflea
phototrophica DFL-43]
gi|162281759|gb|EDQ32052.1| two component sensor kinase/response regulator hybrid [Hoeflea
phototrophica DFL-43]
Length = 1337
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 181/642 (28%), Positives = 293/642 (45%), Gaps = 123/642 (19%)
Query: 364 NFGDPFRKHEMRCRFKQK----APWPLLAISTSIGILVIASLVG--HIFQATVNRIAKVE 417
+FG+ + E R + ++ P+ + S L + + VG + AT + I +
Sbjct: 690 DFGEGEKASESREKIRRTIENGKPYAVERKSAKNRWLKVDAKVGSSNAIIATFSDITATK 749
Query: 418 EDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRT 477
+ + +L KAE AD AKS+FLA +SHEIRTPMNGVLGM ++L TELD Q+ +
Sbjct: 750 QREAELHDLLGKAETADRAKSEFLANMSHEIRTPMNGVLGMAELLSRTELDTRQRTFADI 809
Query: 478 AQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVY 537
SG AL+++IN++LD +K+++G+L LE+ F+LR ++DV +L S ++ +K +EL V
Sbjct: 810 IVKSGTALLTIINDILDFSKIDAGQLTLESQPFDLREAIEDVATLISSRAAEKDIELIVR 869
Query: 538 ISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSK 597
I +P+ L+GD GR RQ++TNL+GN+IKFTE GH+ + V
Sbjct: 870 IDPALPDCLVGDVGRIRQVMTNLVGNAIKFTETGHVLIEV-------------------- 909
Query: 598 NTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 657
+G P + +GS ++L + V DTG GIP E +F
Sbjct: 910 ---TGSPAS--------------EGS-----------VDLTLRVHDTGIGIPPEKLDAVF 941
Query: 658 TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTS 717
F QV S +R H GTG+GL+I+ LV M G I S P GS F
Sbjct: 942 DKFSQVDTSSTRRHEGTGLGLAITSRLVALMDGTISAESTPGEGSVFCVKITM------P 995
Query: 718 NEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQ 777
E ++ + P VS G + LV+D + ++ + + LS
Sbjct: 996 VEKRTETVRIAPVDVS----GARVLVIDDNAVNREILIEQLSAWEFDACAAVSGEEGLSV 1051
Query: 778 IASGSKI---INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN-SISSSRAN 833
+ + S +N ++++ ++ E+D + +RK + +L + + +S +
Sbjct: 1052 LKAASDYNVDVNAVILDYQMPEQD---GAMVARAIRKNYSAEALPIIMLTSMDVKASEPD 1108
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG------------------------- 868
T+ V + +MKP+RSS L L + + V +
Sbjct: 1109 IQTEIVQ--ATLMKPVRSSELLEKLTKVLQVAAQPKPAAALPQSPADTVQDHDAAVMGAV 1166
Query: 869 ----------NIRNWELPSMSLR---------HLLLGR-KILIVDDNNVNLKVAAAGLKR 908
+ + +LPS+S + GR +I++ +DN VN V L+
Sbjct: 1167 AETGPADDAWSAKAQDLPSVSDQSAPAQQSDAERASGRLEIMVAEDNEVNQIVFTQILED 1226
Query: 909 YGAAVVCVERGKKATEL--LMPPHQFDACFMDIQMPEMDGYE 948
G V+ G A EL + P MD+ MP M+G++
Sbjct: 1227 LGVKYQIVDNGGSAVELWKMANPALI---LMDVSMPVMNGHQ 1265
>gi|429120378|ref|ZP_19181055.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
sakazakii 680]
gi|426325121|emb|CCK11792.1| BarA sensory histidine kinase (= VarS = GacS) [Cronobacter
sakazakii 680]
Length = 919
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 167/531 (31%), Positives = 259/531 (48%), Gaps = 98/531 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + + DKG+EL + + VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLLLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFT+ G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTDHGNIDIVVEKRAISNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S P+ GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ + GM+ V+ AK +R + + V V S L L Q
Sbjct: 522 --PNALVDRHATDMLAGMRLAYVEKNEAAAKSTRDLLANTPLTV-VYSPDLASLPQAHYD 578
Query: 782 SKIINMILVEQE---VWEKDTSVSTLFVNNL-RKLGCGFQSKLFLLANSISSSRANTSTD 837
+ + ++E + + + F + L L C Q +L +
Sbjct: 579 ILLYAAPVTDREPLSMRHDQLARAATFTDCLILALPCHAQINAEML-----------KKE 627
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
G S + ++KP+ ++ L L + I ELP + + ++ VDDN
Sbjct: 628 GAS--ACLLKPVTATRLMPLLLEHCRL-----IHARELPEGDQSRMPM--TVMAVDDNPA 678
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L+ VV E G +A E +L P FD MDIQMP+MDG
Sbjct: 679 NLKLIGALLEDMVQHVVLCESGHQAVERAMLQP---FDIILMDIQMPDMDG 726
>gi|238791234|ref|ZP_04634873.1| Signal transduction histidine-protein kinase barA [Yersinia
intermedia ATCC 29909]
gi|238729367|gb|EEQ20882.1| Signal transduction histidine-protein kinase barA [Yersinia
intermedia ATCC 29909]
Length = 911
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 157/531 (29%), Positives = 244/531 (45%), Gaps = 97/531 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T L TQ DY++T Q S L+
Sbjct: 273 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLTPTQTDYLQTIQRSANNLL 332
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN+VLD +K+E+ KL LE + F LR LD+V+ L + + +KG+EL +++++ VPE L
Sbjct: 333 CIINDVLDFSKLEAEKLILEHIPFPLRGALDEVIILLAHTAHEKGLELTLHVNNDVPEQL 392
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R +QI+TNL+GN+IKFTE+G+I +++ +++ +T+
Sbjct: 393 VGDAMRLQQIVTNLLGNAIKFTEQGNI--------DILLAVQAKTDQQ------------ 432
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ L+V + DTG GI Q+++F F Q S
Sbjct: 433 ----------------------------VTLVVEIHDTGIGISESQQAQLFQAFRQADAS 464
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ--- 723
ISR HGGTG+GL I++ LV M G+I F S + GSTF F + S H
Sbjct: 465 ISRRHGGTGLGLVITERLVKEMGGDISFYSQVDRGSTFRFHLTLDLNETVSYRHPDMSYL 524
Query: 724 --------QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 775
+ N + + + L V P A++ R H L + V + +
Sbjct: 525 EGKTLAYIERNTCAARAALDILSVTPLQVTHSPTLAQLPRQHYDFLLVGVPIPFRNNMAV 584
Query: 776 SQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 835
Q K++ + + + V S S + L+++G
Sbjct: 585 HQ----DKLVAALKISEHVILALPSQSQVEAEQLKQMGAK-------------------- 620
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
+ ++KPL S+ L L + + P+ L K++ VDDN
Sbjct: 621 -------ACLVKPLSSNRLIPLLLSEEPHAESPVVEQTDKPAK------LPFKVMAVDDN 667
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ L+ V + G KA + D MDIQMPE+DG
Sbjct: 668 PANLKLIGTLLEEQVEETVLCDSGAKAIAYAR-ENTLDIILMDIQMPEIDG 717
>gi|442609712|ref|ZP_21024446.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441748728|emb|CCQ10508.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 1267
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 183/617 (29%), Positives = 281/617 (45%), Gaps = 101/617 (16%)
Query: 353 SDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIFQATVNR 412
+DD V TL + P + + FK + +++ SI +VG ++ T
Sbjct: 668 TDDARLRVKTL-YKTPEIEAKEILHFKDGRVFERVSLPMSID----GEVVGRVWSFT--- 719
Query: 413 IAKVEEDYHGMMELKKK---AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
V E +H EL+K AE A AKS+FLA +SHEIRTPMNGVLGML++L DT+L+
Sbjct: 720 --DVTEAHHKQEELQKSQEIAEKASKAKSEFLANMSHEIRTPMNGVLGMLNLLRDTKLND 777
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q +R A S + L++++N++LD +KV++GKLELE + FN +L ++ + K+ +
Sbjct: 778 EQSHKLRLATTSAENLLTILNDILDFSKVDAGKLELEFIDFNPARLLGELAETMALKTSE 837
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K +EL + + D + + GDP R RQI+ NL+GN+IKFT++G + V + +E
Sbjct: 838 KQLELILDLRDLPLQFVKGDPSRLRQILNNLIGNAIKFTQQGEVIVRACMKQED------ 891
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
KG++ SV DTG GI
Sbjct: 892 -----------------------KGWR--------------------FTCSVSDTGIGIS 908
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
AQ+R+F+ F Q S +R GGTG+GL+I K L M G+I S N GSTF F
Sbjct: 909 KSAQNRLFSAFTQADASTTRHFGGTGLGLAICKQLCQLMNGDISLESKENEGSTFHFNLF 968
Query: 710 FGNGSSTSNEHNSQQMNNQPNSVSS-EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
F S+EH QP ++ + + + LVVD +V + GI+ V
Sbjct: 969 FD-----SSEH-------QPITIPRVDLKSLHVLVVDDNQTNREVICGQLTNWGIESVAV 1016
Query: 769 SDQLQCLSQIA--SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 826
Q L + + N+ +++ ++ D + + F S ++ S
Sbjct: 1017 DSGRQALETLNEYQNKRSFNLAILDMQMPSMDGEQLGRAIREQAR----FDSLKLVMMTS 1072
Query: 827 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL-- 884
I + + + KP+ A L A+ + ++ N +LP M +HL+
Sbjct: 1073 IGQLGESHRFADIGFNAYFPKPVT----AEDLFNALSLLSEENKARADLP-MITKHLISE 1127
Query: 885 ------------LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPHQ 931
+IL+V+DN VN VA+ L + G A E L
Sbjct: 1128 VEPPPHHQSSLNSNARILLVEDNMVNQIVASKMLGQMSLTCDVANNGALALEALKQSTPS 1187
Query: 932 FDACFMDIQMPEMDGYE 948
+D MD QMPEMDG+E
Sbjct: 1188 YDLVLMDCQMPEMDGFE 1204
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 875 LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL---MPPHQ 931
+P + L+ L +L+VDDN N +V L +G V V+ G++A E L
Sbjct: 979 IPRVDLKSL----HVLVVDDNQTNREVICGQLTNWGIESVAVDSGRQALETLNEYQNKRS 1034
Query: 932 FDACFMDIQMPEMDGYEM 949
F+ +D+QMP MDG ++
Sbjct: 1035 FNLAILDMQMPSMDGEQL 1052
>gi|302036178|ref|YP_003796500.1| putative histidine kinase [Candidatus Nitrospira defluvii]
gi|300604242|emb|CBK40574.1| putative Histidine kinase, containing PAS domain S-box [Candidatus
Nitrospira defluvii]
Length = 578
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/408 (33%), Positives = 208/408 (50%), Gaps = 66/408 (16%)
Query: 330 TIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAI 389
T +V+ + S PI+ Y GL + LN R+ EM Q +P+
Sbjct: 234 TTYVSAACPASGSTPITPYA------GLVPGAILN-----RRSEMLGLTYQGTSFPV--- 279
Query: 390 STSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIR 449
I + +A+ F V I++ ++ + K+ AEAA +AKSQFLA +SHEIR
Sbjct: 280 --EIAMSCLAAGGTQQFTIFVQDISERKQQEERLCRAKEAAEAASLAKSQFLANMSHEIR 337
Query: 450 TPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVS 509
TPMNGVLGM ++L+ T L+ TQ+ Y T SG L+ +IN++LD +K+E+G+L LE +
Sbjct: 338 TPMNGVLGMTELLLTTPLNDTQRRYAHTVHNSGTNLLHIINDILDFSKIEAGRLVLEYIP 397
Query: 510 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE 569
F LR +L + + L+ +++ KG+ L+V ++ +P+ GDP R RQI+TNL+GN++KFTE
Sbjct: 398 FGLRQLLTETIGLYHEQARKKGLALSVTMTPDIPDMAHGDPHRLRQILTNLVGNALKFTE 457
Query: 570 KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKS 629
G + V V E + +E
Sbjct: 458 TGTVAVFVRPDEGRPGRVRIE--------------------------------------- 478
Query: 630 SSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMK 689
V DTG GIPL+AQ +IF F Q S++R +GGTG+GL+I K LVG M
Sbjct: 479 -----------VTDTGIGIPLQAQEKIFDSFSQADGSMTRKYGGTGLGLAIVKQLVGMMG 527
Query: 690 GEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 737
G++G S P G+TF FT +S E + + P ++++ Q
Sbjct: 528 GQLGLTSTPGQGTTFWFTISVDRSASPETESQPHRSDETPLTMATRQQ 575
>gi|254443126|ref|ZP_05056602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
gi|198257434|gb|EDY81742.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
Length = 724
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 161/527 (30%), Positives = 253/527 (48%), Gaps = 92/527 (17%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
+S+FLA +SHEIRTPMNGV+GM ++L TEL Q++YV T + SG+AL+ LIN +LD +
Sbjct: 198 RSEFLANMSHEIRTPMNGVVGMAELLGHTELGEEQREYVDTIRNSGEALLGLINNILDLS 257
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+GK+ L+A+ F+ R++L+D + L K+ +K +EL + +VP LIGDP R RQ+
Sbjct: 258 KLEAGKMILDAIEFDPRSVLEDTVDLLGAKADEKLIELTGFAESQVPSKLIGDPSRLRQV 317
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+ NL+GN++KFT G + + V L+ NT S V
Sbjct: 318 LLNLVGNALKFTANGTVRLRVTLM-----------------NTSSSEAV----------- 349
Query: 617 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
L SV DTG GI E Q R+F PF Q +++R +GGTG+
Sbjct: 350 --------------------LRFSVRDTGVGIDEEQQKRLFKPFSQAEGAVARKYGGTGL 389
Query: 677 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 736
GLSIS+ + M G+I S + GS F+F F ++++ P
Sbjct: 390 GLSISQQIARAMGGQILLESERDKGSEFSFALRF------KLPEKDEEVSEAPKE----- 438
Query: 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE 796
IRA V H L +Q + + L + + + + + E E
Sbjct: 439 -----------EIRALVLVNHTAEL-VQYDELFASLDVKATVVDAQERADEAIAEAE--R 484
Query: 797 KDTSVSTLFVNNLRKLG----------CGFQSKLFLLANSISSSRANTSTDGVSIPSV-I 845
+D ++ ++G F+ K L ++I S+ ++ +G + +
Sbjct: 485 RDAPYHFCLYDDGYRIGGYKSKASNRLGSFEPKGLPLIHAIPMSQRSSFPNGKHSERIQL 544
Query: 846 MKPLRSSMLAASLQRAM----GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
KP+R S L ++ +A+ + + RN +SL L ++LIVDD+ +N +
Sbjct: 545 RKPIRRSELERAILQAVDPQAALTAQIRARN---ERVSLPELDPSLRLLIVDDHPLNQGI 601
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
A L+R G G +A + + +D FMD QMPEMDG+E
Sbjct: 602 ARMILRRLGFQADIAVNGVEALD-MTANRNYDLVFMDCQMPEMDGFE 647
>gi|86145892|ref|ZP_01064220.1| hybrid sensory kinase [Vibrio sp. MED222]
gi|85836347|gb|EAQ54477.1| hybrid sensory kinase [Vibrio sp. MED222]
Length = 1223
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 163/535 (30%), Positives = 251/535 (46%), Gaps = 94/535 (17%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
AKS FLA +SHEIRTPMN ++GM + + T+L Q++Y+ + S L+ LIN++LD
Sbjct: 479 AKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQRNYIHKVKLSSDTLLGLINDILDF 538
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+E+GKL++E V F L +LD++ +L ++ D+G+EL + + VP LIGDP R Q
Sbjct: 539 SKIEAGKLDIEKVDFQLENVLDNITNLVGLRASDRGLELLIQVDRDVPTNLIGDPLRLGQ 598
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
I+ NL N++KFTEKG + +++ + E D I+
Sbjct: 599 ILINLSNNAVKFTEKGEVKISISVAERQGDDIK--------------------------- 631
Query: 616 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
L +V D+G G+ E S++FT F Q S +R +GGTG
Sbjct: 632 ---------------------LNFAVSDSGIGMKQEQASKLFTKFTQADSSTTRKYGGTG 670
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735
+GL+ISK L M G+I + GSTF+FT +T H+ QQ V +
Sbjct: 671 LGLAISKELSQLMGGDIHVSTELGKGSTFSFTI------ATRVSHSIQQ---HRVVVPAS 721
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW 795
+K LVVD A++ +V D L+ L + S ++ L+E
Sbjct: 722 INNLKVLVVDDNS-SARL-------------IVGDILESLKLTPTLSSSVDEALIELHTA 767
Query: 796 EKDTSVSTLFVNN-----------LRKLGCGFQ---SKLFLLANSISSSRAN-TSTDGVS 840
+ L +++ L +L G Q K+ +L A G
Sbjct: 768 DAQNKPFDLVISDWKMPKRDGVDLLAELKNGQQLTMPKIMMLTAYDREELAELIEQRGFE 827
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP---SMSLRHLLLGRKILIVDDNNV 897
+PS++ KP+ SS L S+ G+ + + EL ++ L G IL+V+DN +
Sbjct: 828 VPSILDKPITSSHLYDSIVSLYGL-DSDRVSRSELEQQNQLANVQQLAGANILLVEDNEI 886
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATEL----LMPPHQFDACFMDIQMPEMDGYE 948
N ++A L+ V E G++A +L + FD MD QMP MDGYE
Sbjct: 887 NQELATELLEGQQIKVTIAENGQQAIDLYQQAITDDVPFDGILMDCQMPVMDGYE 941
>gi|334705873|ref|ZP_08521739.1| hybrid sensory histidine kinase BarA [Aeromonas caviae Ae398]
Length = 906
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 169/528 (32%), Positives = 252/528 (47%), Gaps = 93/528 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G L+ T L +Q DY++T + S + L+
Sbjct: 281 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKTSLTPSQTDYMQTIEKSARNLL 340
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN++LD +K+E+GKL+LE + F+LR L++ + L + DK +EL++ + VP+ L
Sbjct: 341 GIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLQVDAAVPDYL 400
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R +Q++TNL GN+IKFTE+G++ V V
Sbjct: 401 TGDPMRLQQVLTNLTGNAIKFTERGNVDVRV----------------------------- 431
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
Q G SS + + L V + DTG GI E Q ++F F Q S
Sbjct: 432 ------------EQTG------ESSGNKVRLRVLIRDTGIGISEEQQRQLFQAFNQADSS 473
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR +GGTG+GL I++ LV +M G+I F S GS F+F H ++
Sbjct: 474 ISRRYGGTGLGLVITQKLVQQMGGQIRFKSELGKGSVFSF-------------HLDLDVS 520
Query: 727 NQPNSVS---SEFQGMKALVVDPRP-----IRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
P S QG + +++P P + A + +H L + V ++ +S
Sbjct: 521 PLPQSERLPLDRIQGKRVWLLEPDPFTHASLLALLGEWH---LDVHSLTVDEEWPPMSS- 576
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
+M+L+ V + L L G Q+ + LL++ + G
Sbjct: 577 ------QDMVLIGSSTLHSPQQV----IARLDGLD-GQQNTIVLLSSHEPALYDAMLAHG 625
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 898
+ KP+ L +L V R LP+ + R + K+L VDDN N
Sbjct: 626 AV--HCLSKPINHRKLLHALLSPEAV------RRAPLPAPTPRS-VQAVKVLAVDDNAAN 676
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
LK+ AA LK VV + GK+A L FD FMDIQMP MDG
Sbjct: 677 LKLIAAMLKEMVTEVVVCKNGKEAVNLAQ-SQPFDIIFMDIQMPVMDG 723
>gi|332535352|ref|ZP_08411148.1| putative sensor protein [Pseudoalteromonas haloplanktis ANT/505]
gi|332035225|gb|EGI71733.1| putative sensor protein [Pseudoalteromonas haloplanktis ANT/505]
Length = 1104
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 167/563 (29%), Positives = 265/563 (47%), Gaps = 85/563 (15%)
Query: 395 ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 454
++ +A+L+G + ++ RI E ++ K+ AE A AKS+FLA++SHEIRTPMNG
Sbjct: 555 LIAVAALIGSL-HSSQQRI----ETEQKLVSAKETAEQAVEAKSEFLASMSHEIRTPMNG 609
Query: 455 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514
VLGML+++ T+LD+ Q+ ++ AQ+S ++L+++IN++LD +K+E+GKL++E V FNL
Sbjct: 610 VLGMLNIIKQTQLDLQQKHHIELAQSSAQSLLNIINDILDFSKIEAGKLDIENVQFNLPR 669
Query: 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 574
+L +V+ F+ K + +L + + +I DP R RQI+ NL+GN++KFT G +
Sbjct: 670 LLGEVVESFALKVEQNNTKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTIDGEVV 729
Query: 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 634
+T + E DGS
Sbjct: 730 ITARIDETT-------------------------------------DGSF---------- 742
Query: 635 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 694
L S+ DTG GI + Q+ +F F Q S +R GGTG+GL+I K L M GE+
Sbjct: 743 --LQCSIIDTGIGIDPKKQASLFDSFTQADASTTRQFGGTGLGLAIVKQLCELMNGEVSV 800
Query: 695 VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 754
S+ GSTF+FT S + S + N+ L++D + A +
Sbjct: 801 NSMQGEGSTFSFTVQIQPRLSKEQDLPSHLIKNK-----------HILIIDECSLNANTA 849
Query: 755 RYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814
+ G +V + + L+ +++ + ILV+ +EK + N +
Sbjct: 850 NKQLTVWGAKVNCIHNYLEVDDYLSNVTTHPGAILVDYYFFEKAPQTHITALKNFINM-- 907
Query: 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 874
KL ++A S S G+ + +I KPL S L SL N I +
Sbjct: 908 -HSCKLVIMAP--MSYSPEESKVGMEVDCMIFKPLTPSDLFDSLT------NDKYIEQQQ 958
Query: 875 LPSMSLRHLLLG-------RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 927
+ L ++L+V+DN +N VA+A LK+ G E G +A L
Sbjct: 959 QQAQLQNKLTKAPVLDSSEPQLLLVEDNKINQVVASALLKQAGVTFDIAENGLEAIVKLN 1018
Query: 928 PPH--QFDACFMDIQMPEMDGYE 948
+ MD QMPEMDGY+
Sbjct: 1019 AKQGKPYKLVLMDCQMPEMDGYQ 1041
>gi|117921856|ref|YP_871048.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
gi|117614188|gb|ABK49642.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
Length = 1767
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 154/523 (29%), Positives = 251/523 (47%), Gaps = 69/523 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++A+AA AK FLA +SHEIRTPMN ++GM + + T LD Q++YV + + K+L+
Sbjct: 1030 KEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTALDKKQKNYVEKIERASKSLL 1089
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+GKL++E+V F L +L+D+ +FS K+ K +EL ++ VP L
Sbjct: 1090 SIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVAPNVPRHL 1149
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD R Q++ NLM N+IKFTE+G + +++ LVE+ D + + + S L+
Sbjct: 1150 FGDSLRLGQVLINLMNNAIKFTERGEVLLSLNLVEQQNDDVVLRFSVRDSGIGLTA---- 1205
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D FKS F Q S
Sbjct: 1206 --------------DQQAKLFKS------------------------------FSQADTS 1221
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I K LV M G IG S GSTF FT Q +
Sbjct: 1222 TTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYFTVKL------------QISS 1269
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
Q +V+ E +GM LV D + R ++ +G +V+ V + +++ +
Sbjct: 1270 GQKLTVAQELEGMPILVADDNATARDIMRTTLESMGFRVDTVRSGEEAVTRCIQQEYAVA 1329
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+I W+ +++ ++ L+ ++ ++ + + + + I
Sbjct: 1330 LI-----DWKMPNLDGIETAKQIKQQAK--KAPRILMVSAHANQDFLSQIEELGLAGYIS 1382
Query: 847 KPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905
KP+ +S L + ++G +R E L L G++IL+V+DN +NL+VA
Sbjct: 1383 KPISASRLLDGIINSLGRAGVLPVRRQSESIDPKLLLPLKGKRILLVEDNEMNLEVATEF 1442
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L++ G + G+ A + L FD MD QMP MDGY+
Sbjct: 1443 LEQVGIILSIATNGQIALDKL-EQQSFDLVLMDCQMPVMDGYQ 1484
>gi|350563745|ref|ZP_08932565.1| histidine kinase [Thioalkalimicrobium aerophilum AL3]
gi|349778266|gb|EGZ32622.1| histidine kinase [Thioalkalimicrobium aerophilum AL3]
Length = 562
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 140/425 (32%), Positives = 234/425 (55%), Gaps = 55/425 (12%)
Query: 439 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKV 498
QFLA +SHE+RTPMNGV+GM D+L+ T L+ QQ YV ++SG++L+++IN++LD +K+
Sbjct: 178 QFLANMSHELRTPMNGVIGMTDLLLLTPLNTKQQRYVDIVKSSGQSLLAIINDILDFSKI 237
Query: 499 ESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIIT 558
E+G L LE + F+L+ +LDD+++ K+Q+K ++L + I ++VP+ + GDPGR +QI+
Sbjct: 238 EAGMLNLEVIDFDLQQVLDDLVAGLVFKAQEKDLKLELLIDEQVPKRIKGDPGRLKQILL 297
Query: 559 NLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTF 618
NL+GN++KFT KG + V+V L +E
Sbjct: 298 NLVGNAVKFTPKGKVVVSVTLTDE------------------------------------ 321
Query: 619 NQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGL 678
P +S+ + L V DTG GIP + R+F F QV PS +R +GGTG+GL
Sbjct: 322 ------QPQQSTD---VQLHFRVTDTGIGIPPDKLDRLFQEFSQVDPSHTRQYGGTGLGL 372
Query: 679 SISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS--STSNEHNSQQMNNQPNSVSSEF 736
+ISK L M G IG SIP GSTF FTA F + T N+ + ++ P +
Sbjct: 373 AISKQLAELMGGAIGVNSIPGEGSTFWFTACFSKQAVRPTLNKAATIAQDSLP---TFNH 429
Query: 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE 796
Q + L+ + I KV+ +Q +G+ +VV++ + L A + +++L++ ++
Sbjct: 430 QTVHILLAEDNLINQKVALGILQMMGLSADVVANGQEALE--AVKVQQYDLVLMDVQMPV 487
Query: 797 KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT-STDGVSIPSVIMKPLRSSMLA 855
D +T + + L ++ L ++A + ++ + + S V + + KP+ ++LA
Sbjct: 488 MDGLEATHHLRDAASL--YYRPNLPIIAMTANAMQGDKESCLKVGMNDYMTKPVSPAVLA 545
Query: 856 ASLQR 860
LQ+
Sbjct: 546 TLLQQ 550
Score = 47.0 bits (110), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
IL+ +DN +N KVA L+ G + V G++A E + Q+D MD+QMP MDG E
Sbjct: 434 ILLAEDNLINQKVALGILQMMGLSADVVANGQEALEAV-KVQQYDLVLMDVQMPVMDGLE 492
>gi|359432137|ref|ZP_09222530.1| hypothetical protein P20652_0636 [Pseudoalteromonas sp. BSi20652]
gi|357921229|dbj|GAA58779.1| hypothetical protein P20652_0636 [Pseudoalteromonas sp. BSi20652]
Length = 1089
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 172/565 (30%), Positives = 266/565 (47%), Gaps = 89/565 (15%)
Query: 395 ILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNG 454
++ +A+L+G + ++ RI E ++ K AE A AKS+FLA++SHEIRTPMNG
Sbjct: 540 LIAVAALIGSL-HSSQKRI----ETEQQLVTAKNVAEQAVEAKSEFLASMSHEIRTPMNG 594
Query: 455 VLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514
VLGML +L T+LD Q+ ++ AQ+S ++L+++IN++LD +K+E+GKL++E V FNL
Sbjct: 595 VLGMLSILKQTKLDKQQEHHIELAQSSAQSLLNIINDILDFSKIEAGKLDIEKVQFNLPR 654
Query: 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIF 574
+L +V+ F+ + +L + + +I DP R RQI++NL+GN++KFT G +
Sbjct: 655 LLGEVVESFALTVEQNNTKLILDATQITISEIISDPNRLRQILSNLIGNAVKFTINGEVI 714
Query: 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADL 634
+T + E DGS
Sbjct: 715 ITARIDETT-------------------------------------DGSF---------- 727
Query: 635 INLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGF 694
L SV DTG GI + Q+ +F F Q S +R GGTG+GL+I K L M GE+
Sbjct: 728 --LQCSVIDTGIGIDSKKQALLFDSFTQADTSTTRQFGGTGLGLAIVKQLCELMNGEVSV 785
Query: 695 VSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVS 754
S+P GSTF+FT S + S + N+ + L++D + A ++
Sbjct: 786 NSVPEEGSTFSFTIQIQPRLSKEQDLPSHLIKNK-----------RILIIDKCSLNANIA 834
Query: 755 RYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814
+ G +V +++ L + + ILV+ +EK + + N K+
Sbjct: 835 NKQLTVWGAEVNCINNYLDVSHYLNDVTIPPVAILVDYYFFEKAPLANITTLKNFIKMHT 894
Query: 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE 874
KL ++A S S G+ + +I KPL S L SL N I +
Sbjct: 895 ---CKLVIMAP--MSYSPEESKIGMEVDCMIFKPLTPSDLFDSLT------NDKYIEQQQ 943
Query: 875 LPSMSLRHLLLG-------RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 927
+ L +L+V+DN +N VA+A LK+ G E G +A L
Sbjct: 944 NQAQLQNKLTKAVTADSTEPTLLLVEDNKINQIVASALLKQAGIIFDIAENGLEAINKLN 1003
Query: 928 P----PHQFDACFMDIQMPEMDGYE 948
P+Q MD QMPEMDGY+
Sbjct: 1004 EKKGRPYQL--ILMDCQMPEMDGYQ 1026
>gi|365101447|ref|ZP_09332077.1| signal transduction histidine-protein kinase BarA [Citrobacter
freundii 4_7_47CFAA]
gi|363646997|gb|EHL86226.1| signal transduction histidine-protein kinase BarA [Citrobacter
freundii 4_7_47CFAA]
Length = 918
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 160/525 (30%), Positives = 252/525 (48%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTEGGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPN-----SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN S + G + V+P A+ + + ++V + S L +
Sbjct: 522 --PNVLVDRSTTLCLAGKRLAYVEPNATAAQCTLDILSETPLEV-IYSPSFSGLPKDHYD 578
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
++ + + +E L + + R + LLA +
Sbjct: 579 ILLLGIPVTLRE---------PLTMQHERLASAAAMTDFLLLALPCHAQINAEKLKQGGA 629
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + + + + + + ++ VDDN NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHSAD-------PLLVDESKIAMTVMAVDDNPANLKL 682
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ VV + G +A + QFD MDIQMP+MDG
Sbjct: 683 IGALLEDKVQHVVLCDSGHQAVDRAR-QMQFDLILMDIQMPDMDG 726
>gi|418407316|ref|ZP_12980634.1| two component sensor kinase/response regulator hybrid [Agrobacterium
tumefaciens 5A]
gi|358006460|gb|EHJ98784.1| two component sensor kinase/response regulator hybrid [Agrobacterium
tumefaciens 5A]
Length = 1232
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 165/557 (29%), Positives = 268/557 (48%), Gaps = 94/557 (16%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ L +AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L + LD Q+ + SG
Sbjct: 666 LQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDTRQKTFTDIIVKSG 725
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
AL+++IN++LD +K+E+G+++L +V F+ ++DV+SL S + +K +EL V I V
Sbjct: 726 NALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKNIELVVRIDPSV 785
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
++GD GRFRQ++TNL+GN++KFTE GH+ + ELS+
Sbjct: 786 FGKVMGDAGRFRQVVTNLVGNAVKFTEMGHVLI----------------ELSA------- 822
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
+S+ A L + VED+G GIP + IF F Q
Sbjct: 823 -------------------------QSAEASETILSLRVEDSGIGIPADKLETIFDKFSQ 857
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +R H GTG+GL+I+ LVG G I VS GSTF F H +
Sbjct: 858 VDGSATRRHEGTGLGLAITVGLVGLFDGTINVVSEVGKGSTFEVNIPF---------HVT 908
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIA 779
++ + P ++ + ++ LV+D + ++ ++ GI V D + L + A
Sbjct: 909 EKRRDAP-LLAMAIEDIRVLVIDDNDVNRRILTEQLKTWGIDGHAVQDGPSGIAVLQEAA 967
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
S I+ I+++ + ++ L V + F + S+ + +
Sbjct: 968 SLGFTIDAIILDYHM----PVMNGLDVVERIRADSRFDDIAIVFLTSMDVVGDESLFTDL 1023
Query: 840 SIPSVIMKPLRSSMLAASL-------------QRAMGVGNKGN---IRNWELPSMSLRH- 882
S+ + +MKP R+ +L ++L Q G+G+ G+ +R P+ R
Sbjct: 1024 SVQAHLMKPARARLLRSTLFDVVRDVRQKRARQDPQGLGSGGSDAPVRPDNGPTDKKRRV 1083
Query: 883 -----LLLGRK------ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 931
++ R+ +L+ +DN+VN V L++ G + V GKKA + H
Sbjct: 1084 VSPPTMVPDRRRPCLVDVLVAEDNDVNQIVFTQILQQAGLRFLIVGNGKKAVQ-AWEEHN 1142
Query: 932 FDACFMDIQMPEMDGYE 948
MD+ MP M+G++
Sbjct: 1143 PAVILMDVSMPVMNGHQ 1159
>gi|358008818|gb|AET99086.1| sensor kinase [Pantoea agglomerans pv. gypsophilae]
Length = 909
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 176/538 (32%), Positives = 253/538 (47%), Gaps = 115/538 (21%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGVLG ++ T+L TQ+DY++T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQLRTTQRDYMQTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LEA+ F LRA LD+ L L + + DKG+EL V VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHDKGLELTVVCDSSVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGD R +QI+ NL+GN+IKFTEKG+I + V + V+ VE E
Sbjct: 403 IGDALRLQQILINLIGNAIKFTEKGYIGLRVG--QRVITQTRVELE-------------- 446
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ VED+G GI + Q+++F F Q S
Sbjct: 447 --------------------------------IQVEDSGIGISEQQQTQLFQAFRQADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M GEI F S P+ GSTF Q++
Sbjct: 475 ISRRHGGTGLGLVITQKLVREMGGEITFSSQPDQGSTFVIRV---------------QLD 519
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS----QI---- 778
PN+ GM PR + A +S I + V S L+ LS QI
Sbjct: 520 LNPNA-----PGM------PRVLDA-LSHARIAYVEADANVASAALEMLSATPLQIDYSE 567
Query: 779 ------ASGSKIINMIL---VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 829
AS ++ M + + Q + ++ L + + S + LLA+ +
Sbjct: 568 TLEGLKASHYPLLLMAMPVDISQPELLNERMINALL-DRADNVLMALPSPMMLLADELKV 626
Query: 830 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRK 888
I I KP+ SL R + + + R ELP +S R L
Sbjct: 627 R---------GIDGCIAKPI-------SLTRLLPMLLDLHTRQISELP-LSPR---LPLT 666
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ ++ + A D MDIQMP++DG
Sbjct: 667 VMAVDDNPANLKLIGALLEEQVQNILLCSSAEHAIREAR-QQSLDVILMDIQMPDIDG 723
>gi|357024389|ref|ZP_09086542.1| hybrid sensory histidine kinase [Mesorhizobium amorphae CCNWGS0123]
gi|355543743|gb|EHH12866.1| hybrid sensory histidine kinase [Mesorhizobium amorphae CCNWGS0123]
Length = 1412
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 169/562 (30%), Positives = 263/562 (46%), Gaps = 102/562 (18%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ E +++A AD AKS+FLA +SHEIRTPMNGVLGM ++L ++LD Q+ + SG
Sbjct: 847 LSEARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSDLDPKQKTFTDIIVKSG 906
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
AL+++IN++LD +K+++G+L L+ FNL ++DV +L S ++++K +EL V + +
Sbjct: 907 NALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRVQPGL 966
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
IGD GR RQI+TNL+GN++KFT++GH+ V V V
Sbjct: 967 ESQFIGDVGRVRQIVTNLLGNAVKFTDEGHVLVDVTGVR--------------------- 1005
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
P + L +SV DTG GIP E +F F Q
Sbjct: 1006 VPAGTK----------------------------LTISVTDTGIGIPEEKLKAVFEKFNQ 1037
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +R H GTG+GL+I+ LV M+GEIG S GSTF FT + +
Sbjct: 1038 VDTSSTRRHEGTGLGLAITSRLVELMEGEIGVESAEGKGSTFWFTVTL----PRAEQQGG 1093
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSDQLQCLSQIA 779
Q++ P V+ G + L+VD + + + E ++ L+ L A
Sbjct: 1094 QRI--MPVDVT----GARVLIVDDNAVNRSILSEQMASWTFDSCAAESGAEGLKVLIAAA 1147
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
+ ++ ++++ ++ + V N G ++ S+ S ANTS +
Sbjct: 1148 AYGVPVDCVVLDYQMPNMSGAEMARIVRNT----AGLAHTPIIMLTSVDQSLANTSYRDL 1203
Query: 840 SIPSVIMKPLRSSM----LAASLQR-------------AMGVGNK----------GNIR- 871
I + ++KP RSS+ L A++QR A G G + ++R
Sbjct: 1204 GIDAQLIKPARSSVLLETLVATIQRHHHSEEANRVLPLASGGGAQALSTAQPSSTASVRA 1263
Query: 872 NWELPSMSLRHLLLGRK---ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-- 926
+ P + R G + IL+ +DN VN V L G V G+KA +
Sbjct: 1264 QLQPPPVRARVRATGERGLDILVAEDNEVNQMVFTQILGETGYGFEIVGNGRKALDAFGR 1323
Query: 927 MPPHQFDACFMDIQMPEMDGYE 948
+ P MD+ MPEM+G E
Sbjct: 1324 LNPRMI---LMDVSMPEMNGLE 1342
>gi|428212988|ref|YP_007086132.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
gi|428001369|gb|AFY82212.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
Length = 932
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 162/532 (30%), Positives = 255/532 (47%), Gaps = 79/532 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+++AE A +AKS FLA +SHEIRTPMN VLGM +L++T L Q+D++ T + SG AL+
Sbjct: 270 RREAEQASIAKSYFLANMSHEIRTPMNAVLGMTGLLLETVLTAEQRDFIETIRTSGDALL 329
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+LI+E+LD +K+E+G++ LE + FNL +++++ L + ++ K VE+A +I + +P L
Sbjct: 330 TLIDEILDLSKLEAGEMHLEQLDFNLATTVEEIIDLLAPQAHLKSVEVASFIEENLPLGL 389
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD R RQI+TNL+GN+IKFTE+G++ V VE V ++ + T L S +T G +A
Sbjct: 390 RGDSSRLRQILTNLIGNAIKFTEEGYV---VLQVERVTENPQETTLLFSVIDT--GIGIA 444
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ S ++F PF QV S
Sbjct: 445 AQNQS-------------------------------------------QLFQPFSQVDSS 461
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I + LV M+G+IG S GS F F F Q++
Sbjct: 462 TTREYGGTGLGLAICQQLVTLMEGKIGLESREGEGSNFWFRVPF----------EKQEIP 511
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+ S E + + LVV + V R + R G+QVE + G N
Sbjct: 512 IEKLSAPREIEDLSLLVVANSEVVRMVIRDRVTRWGLQVEEI-----------EGETAFN 560
Query: 787 MILVE-QEVWEKDTSVSTLFVNNLRKLGCGFQ-------SKLFLLANSISSSRANTSTD- 837
+ + +E E D V L + + + Q S + L+A + + R T
Sbjct: 561 FLQTQWEEGIEYDLMVIDLEMPEITGIALAEQIKQDSRFSSIPLIAIAATHQRNLIKTAL 620
Query: 838 GVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
+KP++ + + RA+G+ + KIL+ +DN V
Sbjct: 621 NSGFCDCPIKPIKPAKFLEVICRAVGLAVTTEPDPASYTKDKINSEQTSIKILLAEDNPV 680
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEM 949
N KVA L+ G +G++A +L H + MD QMP +DGY++
Sbjct: 681 NQKVAIKQLELLGYQADIANQGEEALKLWQ-THAYQIILMDCQMPVLDGYQV 731
>gi|323499989|ref|ZP_08104945.1| hybrid sensory histidine kinase BarA [Vibrio sinaloensis DSM 21326]
gi|323314955|gb|EGA68010.1| hybrid sensory histidine kinase BarA [Vibrio sinaloensis DSM 21326]
Length = 929
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 180/600 (30%), Positives = 284/600 (47%), Gaps = 100/600 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L ++ I + ++ H I QAT + +E
Sbjct: 208 NMVDRIRRGHLDVRIEGKMHGELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 267
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T L +Q DY
Sbjct: 268 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTTLTNSQTDY 327
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S K L+++IN++LD +K+E+GKL LE + F+ + L++V+SL + + +KG+EL
Sbjct: 328 LQTIEKSAKNLLNIINDILDFSKLEAGKLALENIPFDFQESLEEVVSLQATSAHEKGLEL 387
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P L+GD R +Q++TNL+GNSIKFTE+G+I ++V E+
Sbjct: 388 TLKIDPKIPAGLVGDSLRIQQVLTNLVGNSIKFTERGNIDISV--------------EMR 433
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
S K+ D++ L V DTG GI Q+
Sbjct: 434 SQKD----------------------------------DVVELQFMVRDTGIGISERQQA 459
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV +M GEI S + GSTF FT
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRL---- 515
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQ 771
NS M + + L+V+P A V++ + + G+ V S D
Sbjct: 516 ------NSTDMPVTELVDTESLKQRSLLLVEPNMQAASVTQQLLVQAGLMVTYRSSLPDD 569
Query: 772 LQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS 828
+ + + ++ +VEQ+V S + V G S L++ +
Sbjct: 570 AESFDYVLLNLAPNRDHETSVVEQQVEHALRCASHVVV--------GVPSTTLALSDHLI 621
Query: 829 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLG 886
S I KPL L +L N+ ++ +LP + + H L
Sbjct: 622 QSYP---------VHCITKPLSRKRLLQTLS-----ANQESL--PQLPEVIVPHQSETLP 665
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ +A L+ V+ G A + H+FD MDIQMP+MDG
Sbjct: 666 LTVMAVDDNPANLKLISALLQERVEQVITCTNGVDAVK-QAEMHKFDMILMDIQMPQMDG 724
>gi|254457369|ref|ZP_05070797.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|373867994|ref|ZP_09604392.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|207086161|gb|EDZ63445.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
gi|372470095|gb|EHP30299.1| signal transduction histidine kinase [Sulfurimonas gotlandica GD1]
Length = 733
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 171/592 (28%), Positives = 281/592 (47%), Gaps = 89/592 (15%)
Query: 367 DPFRKHEMRCRFKQKA----PWPLLAISTSIGILVIASLVGHIFQATV-NRIAKVEEDYH 421
+ + + ++ +K+K + L I SI IL++A+L ++F + N I + +
Sbjct: 159 NEYIRFQLALAYKKKVNSDYKYLQLIIYASIFILLMATLF-YLFAVKIKNNINTLSRE-- 215
Query: 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
++E K+ AE + K+ FLA++SH+IRTPMNGV+GML +LM+++LD TQ+ A++S
Sbjct: 216 -LVEAKEIAEESVKTKAIFLASMSHDIRTPMNGVIGMLGLLMNSKLDDTQKHQASLAKSS 274
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
KAL+SLIN++LD +KVE+GK++LE + FN+R L D + ++Q+KGVEL + ++D
Sbjct: 275 AKALLSLINDILDFSKVEAGKMDLEYIDFNIRDELGDFAEGIAFRAQEKGVELILEVTDI 334
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+ DPGR RQI++N++GNSIKFT +G I ++ ++D E
Sbjct: 335 EQNMIKADPGRIRQILSNIVGNSIKFTSEGFI-----AIKAILDVTE------------- 376
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
P R LI+ + D+G GIP + +F F
Sbjct: 377 --PTDAR----------------------------LIIEMSDSGIGIPEDKIDTLFDSFS 406
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT--FTAVFGNGSSTSNE 719
QV S +R +GGTG+GL+I + L M G++ S GS FT + S +
Sbjct: 407 QVDASTTRKYGGTGLGLAIVEKLCELMNGKVEVKSDFGKGSIFTIDISVELSQDRSLAIP 466
Query: 720 HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA 779
HNS + K L++D + + +Q G++V D + L +
Sbjct: 467 HNS-------------VKDKKILIIDDSKFSIEAMKKQLQHWGMKVYSAIDSKEALKMLQ 513
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
S ++ +++ + + + S +RK + S ++ S+ S +
Sbjct: 514 DDS--FDIAFIDRVIPDMN---SEELAKTIRK-NTAYSSMKIIMMTSLIDRVDAISYRNI 567
Query: 840 SIPSVIMKPLRSSMLAASLQRAMGVGN---KGNIRNWELPSMSLRHLLLGRKILIVDDNN 896
I KP + L +L N NI + P + IL+V+DN
Sbjct: 568 GIDGFFPKPATTKDLFKALDTLFKDDNFFSSENIEEEQDP-------IFESNILLVEDNI 620
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPHQFDACFMDIQMPEMDGY 947
N VA L+ +G G +A E+L +++ FMD QMPE+DGY
Sbjct: 621 TNQLVANGMLEDFGLEADIANNGIEALEMLNSSSKKYNLIFMDCQMPELDGY 672
>gi|350551561|ref|ZP_08920775.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349796928|gb|EGZ50709.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1212
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 168/561 (29%), Positives = 261/561 (46%), Gaps = 84/561 (14%)
Query: 405 IFQATVNRIAKVEEDYHGMME----LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 460
+ QAT ++ + + H MME L A+ A+ AKS+FLA +SHEIRTPMNGV+GM
Sbjct: 431 MLQATNMQLREATKYAHEMMERATNLAIDADVANRAKSEFLANMSHEIRTPMNGVIGMTG 490
Query: 461 MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 520
+LMDTEL Q+ Y + +S ++L+SLIN++LD +K+E+GKL+LE + FNL +LD+
Sbjct: 491 LLMDTELTAQQRHYAESVLSSAESLLSLINDILDFSKIEAGKLDLEQIDFNLLNLLDEFA 550
Query: 521 SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580
+ + ++ KG+E + P L GDPGR RQI+ NL N++KFT G + V V
Sbjct: 551 TTLAWRAHQKGLEFICAVEPDTPVHLRGDPGRLRQILNNLGSNAVKFTHSGEVVVRV--- 607
Query: 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 640
RC S+ D + L +
Sbjct: 608 ---------------------------RC------------------LHSAQDQVVLQCA 622
Query: 641 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700
+ DTG GI + + +F F Q+ S +R +GGTG+GL+I K L M GEIG S
Sbjct: 623 ITDTGIGIAQQDLALLFERFAQLDASTTRQYGGTGLGLAICKRLTSLMHGEIGVESKAGQ 682
Query: 701 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNS-----VSSEFQGMKALVVDPRPIRAKVSR 755
GSTF FT + +QP++ V ++ QG++ LVVD P ++
Sbjct: 683 GSTFWFTVTL--------------LPSQPSAIPDLPVHTDLQGVRILVVDDHPTNCEILM 728
Query: 756 YHIQRLGIQVEVVSDQLQC---LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNN---L 809
+ G++ D +Q L + A+ + L++ + D + + L
Sbjct: 729 ALLHSWGMRPCEARDGMQALVMLREAATTPDPFQVALIDLAMPIMDGEQLGQMIQSDELL 788
Query: 810 RKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGN 869
L C L + + R S +P + + ++L L
Sbjct: 789 AALRCVIMPSLTVPGD---LKRYAASGFHAYLPKPVRQQDLHNVLCNVLDEHTRQAETMV 845
Query: 870 IRNWELPSMSLRHLLLGR---KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 926
R+ M L + +IL+V+D+ VN +VA L+R G + E G++A + L
Sbjct: 846 TRHSSRERMYAEQPLFAQWQARILLVEDDPVNQEVALGALQRLGLSADLAENGEQALQAL 905
Query: 927 MPPHQFDACFMDIQMPEMDGY 947
+D FMD+QMP +DG+
Sbjct: 906 AMA-TYDLVFMDVQMPVLDGF 925
Score = 41.2 bits (95), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 875 LPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL----MPPH 930
+P + + L G +IL+VDD+ N ++ A L +G G +A +L P
Sbjct: 700 IPDLPVHTDLQGVRILVVDDHPTNCEILMALLHSWGMRPCEARDGMQALVMLREAATTPD 759
Query: 931 QFDACFMDIQMPEMDGYEMLPCFESFLLIAIL 962
F +D+ MP MDG ++ +S L+A L
Sbjct: 760 PFQVALIDLAMPIMDGEQLGQMIQSDELLAAL 791
>gi|344344646|ref|ZP_08775507.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum 984]
gi|343803810|gb|EGV21715.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum 984]
Length = 1400
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 159/526 (30%), Positives = 245/526 (46%), Gaps = 67/526 (12%)
Query: 426 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 485
L +A+ A AKS+FL+ +SHEIRTP+NGV+GML +L ++ L QQ Y+ AQ SG+ L
Sbjct: 747 LANRAKMASRAKSRFLSNMSHEIRTPLNGVIGMLGLLHESPLSADQQRYLEIAQHSGEGL 806
Query: 486 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 545
+ +IN++LD +KVE+GKLELE + F+L +LDD ++ + + +K +EL + +P
Sbjct: 807 LKIINDILDFSKVEAGKLELERIDFDLGELLDDFVATMALHAHEKTLELTCTAAPDIPTA 866
Query: 546 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 605
L GDPGR QI+TNL+GN+IKFTE G + V L++ D+ +V L + ++T G P
Sbjct: 867 LRGDPGRVLQILTNLVGNAIKFTEHGEVAVRATLLD--CDAHQVRLRL-AVRDTGIGIPR 923
Query: 606 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665
R + GF QV P
Sbjct: 924 DKRERLFHGFS---------------------------------------------QVDP 938
Query: 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 725
S +R +GGTG+GL+I+K LV M GE+G S GS F F E Q
Sbjct: 939 SNTRRYGGTGLGLAITKQLVELMGGELGLESTLGQGSIFWCDLPFARQRGPEAE----QH 994
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---S 782
QP S+ +G + LVVD ++ + G+ V D Q L + G
Sbjct: 995 RPQP---SARLRGARVLVVDDNRHNRELIAAQLSDWGLTVAEAGDGDQALEHLHEGVAQE 1051
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
+ L++ + + D L + + ++ ++ +R ++
Sbjct: 1052 HPFTIALIDVNMPDMD----GLTLGEAIRAEPTLAGTALVMMTALGIAREAERCARHALG 1107
Query: 843 SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 902
+ KP+R L A+L++ + P+ RH ++L+ DDN N +VA
Sbjct: 1108 LQLTKPMRQRELLATLEQTL-TRPADQPHPVASPTQRARH---PARLLLADDNLTNQQVA 1163
Query: 903 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L G CV G++ E L H +D +D+QMP +DG E
Sbjct: 1164 LGILGHLGFDADCVSNGRQVLEALEARH-YDLLLLDVQMPLLDGLE 1208
>gi|152987692|ref|YP_001349930.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7]
gi|452879919|ref|ZP_21956970.1| sensor/response regulator hybrid [Pseudomonas aeruginosa VRFPA01]
gi|150962850|gb|ABR84875.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7]
gi|452183578|gb|EME10596.1| sensor/response regulator hybrid [Pseudomonas aeruginosa VRFPA01]
Length = 925
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 162/539 (30%), Positives = 246/539 (45%), Gaps = 104/539 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+K+A A KS+FLA +SHEIRTP+NG+LG ++L +EL QQDY+ T Q S ++L+
Sbjct: 274 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLSTIQKSAESLL 333
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+INE+LD +K+E+GKL LE + FNLR ++ D L++ + + +K +EL + P L
Sbjct: 334 GIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDTPVQL 393
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R +QI+TNL+GN+IKFT+ G + V L +E
Sbjct: 394 QGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDE------------------------ 429
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
S D L +SV+DTG G+ + Q +F F Q S
Sbjct: 430 ------------------------SDDRAQLRISVQDTGIGLSEDDQQALFKAFSQADNS 465
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+SR GGTG+GL ISK L+ +M GEIG S P G+ F + S
Sbjct: 466 LSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISLSLPKSREDSE-------- 517
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD--QLQ----------- 773
+ +S G + +++P+ + + + + G++V D LQ
Sbjct: 518 ---TAGASWAAGQRVALLEPQELTRRALHHQLSDFGLEVSEFEDLASLQEHLRNPPPGQL 574
Query: 774 --CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
L+ + + + + Q WE +LGC K +L + ++
Sbjct: 575 PLSLAVLGVSAAMYPPEQLSQSFWE------------FERLGC----KTLVLCPTTEQAQ 618
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR--KI 889
+ S + V KP + L LQ + V + + S GR ++
Sbjct: 619 YHAS---LPDEQVEAKPACTRKLQRKLQELLQVRPARSDKPHAAAS--------GRPPRL 667
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L VDDN NL + L GA V V+ G A E++ +FD FMD+QMP MDG +
Sbjct: 668 LCVDDNPANLLLVQTLLSDLGAQVTAVDSGYAALEVVQ-RERFDLVFMDVQMPGMDGRQ 725
>gi|381158911|ref|ZP_09868144.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
gi|380880269|gb|EIC22360.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
Length = 1026
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 161/536 (30%), Positives = 257/536 (47%), Gaps = 78/536 (14%)
Query: 426 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 485
L +KA AA++AKS+FLA +SHEIRTP+N ++G+ D+L + LD Q+ Y T + + ++L
Sbjct: 492 LAEKASAANLAKSEFLANMSHEIRTPLNAIIGITDLLSEAGLDEEQRQYAETLRGASRSL 551
Query: 486 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 545
++LIN++LD +K+E G+L LE ++F L ++++V+++ + +++ KG+E V + R+P
Sbjct: 552 LALINDILDFSKIEKGRLTLECIAFGLDPLIEEVVTVAAVQAEAKGLEFLVDVDQRIPAW 611
Query: 546 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 605
L+GD R RQ++ NL+GN++KFT G + + V L++ + + VE
Sbjct: 612 LLGDSLRLRQVLINLLGNAVKFTSSGDVTLAVELIQAKAERVVVE--------------- 656
Query: 606 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665
SV DTG GI + Q +F F Q
Sbjct: 657 ---------------------------------FSVRDTGIGIAPDRQQALFDAFTQADS 683
Query: 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 725
S +R GGTG+GLSI+ LV M G + S P GS F FT + + +S Q
Sbjct: 684 STTRKFGGTGLGLSIAAELVTLMGGSLRVDSQPEAGSRFYFTLHLDLPNPAESPQDSLQT 743
Query: 726 NNQPNSVSSEFQGMKALVV-DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA-SGSK 783
G +ALVV D +P+R + R H++ LG++V+ +D S +A G
Sbjct: 744 ----------LAGRRALVVADYQPLRELLPR-HLRALGLRVQAAADVGGAASLLAKDGPT 792
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
+ MI + S + LR+ +++ L+A+S A +
Sbjct: 793 DLAMI-----DYHFPGSEPREQIQALRERATPGATRILLMASSRDFGEAVALRTAGLADT 847
Query: 844 VIMKPLRSSMLAASLQR-AMGVGNKG-------NIRNWELPSMSLRHLLLGRK---ILIV 892
VI KPL L +L GV R+ S + + G K IL+
Sbjct: 848 VISKPLTRGALRRTLSDFVQGVSKDAGQDTQTQGSRDQSRASGGIGNAAGGIKDACILVA 907
Query: 893 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
DD N V L + G V+ G++A E+L H D MD++MPEM+G++
Sbjct: 908 DDEPTNQIVLKKILAKLGHRVLVAANGREALEVL-SQHPCDLVLMDVRMPEMNGHQ 962
>gi|428148608|ref|ZP_18996471.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|427541449|emb|CCM92609.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
Length = 916
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 166/529 (31%), Positives = 257/529 (48%), Gaps = 95/529 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QI+TNL+GN+IKFTE G+I V V + + + V+ E+ +T G P
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ G + V+ A+ + + ++V + S L++
Sbjct: 522 --PNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 840
+++LV V +D S L K C + L L + S DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLAK-ACAMSDNVLLALPCNAQVSAEALKRDGVA 629
Query: 841 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
+ ++KPL ++ L +L A+ I + +LP ++ VDDN
Sbjct: 630 --ACLLKPLTTTRLLPALVATSHALASAPLMQIDSHKLP----------MTVMAVDDNPA 677
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L V+ + G++A + Q D MDIQMP+MDG
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-KAKQLQMDLILMDIQMPDMDG 725
>gi|399521248|ref|ZP_10761988.1| K07678 two-component system, NarL family, sensor histidine kinase
BarA [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399110486|emb|CCH38547.1| K07678 two-component system, NarL family, sensor histidine kinase
BarA [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 923
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 167/556 (30%), Positives = 248/556 (44%), Gaps = 114/556 (20%)
Query: 413 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 472
I +E D+ +K+A A KS+FLA +SHEIRTP+NG+LG ++L +EL QQ
Sbjct: 272 IQNIELDFA-----RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQ 326
Query: 473 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 532
DY+ T + S +L+ +INEVLD +K+E+GKL LE++ FNLR +L D L++ + + +K +
Sbjct: 327 DYLSTIEKSADSLLGIINEVLDFSKIEAGKLMLESIPFNLRDLLQDTLTILAPAAHEKQL 386
Query: 533 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592
EL I P L GDP R +Q++TNL+ N+IKFT +G I + + +E DS +
Sbjct: 387 ELVSLIYRDTPLALRGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESADSAQ---- 442
Query: 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 652
L +SV DTG G+ E
Sbjct: 443 --------------------------------------------LRISVMDTGIGLSDED 458
Query: 653 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712
+F F Q S+SR GGTG+GL ISK L+ +M GEIG S P GS F T
Sbjct: 459 LRALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWITLTLPK 518
Query: 713 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 772
++ + + QG + V++ + + + ++ G++VE +D
Sbjct: 519 AR-----------DDAEDLPRASLQGRRVAVLESHELARQALAHQLEDCGLEVESFADPG 567
Query: 773 QCLSQIASGSKIINMILVEQEVWEKDTSVSTL--------------FVNNLRKLGCGF-- 816
Q + +Q+ E+ S++ L + L +LGC
Sbjct: 568 QLFDAVN-----------QQQNQERPLSLAVLGITASQIPPDSLGQRIEELDRLGCKALV 616
Query: 817 ---QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW 873
++L L +S+ + A P K ++ + S QR I N
Sbjct: 617 LCPTTELGLFHDSLPDAYAQLQAK----PPCTRKLYKALVELVSPQRP--ASESLTISNT 670
Query: 874 ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QF 932
P +IL DDN NL + L GA V V+ G A E + H F
Sbjct: 671 RRP-----------QILCADDNPANLLLVQTLLDDLGAQVTAVDSGYAAIEAVQ--HGSF 717
Query: 933 DACFMDIQMPEMDGYE 948
D FMD+QMP MDG E
Sbjct: 718 DLVFMDVQMPGMDGRE 733
>gi|386827544|ref|ZP_10114651.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
gi|386428428|gb|EIJ42256.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
Length = 1871
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 145/544 (26%), Positives = 267/544 (49%), Gaps = 77/544 (14%)
Query: 413 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 472
I +++ + E K+ AE+A+ +KS FLAT+SHEIRTPMNGV+GM +L++T+L Q+
Sbjct: 1187 ITSLKQVEKALREAKENAESANRSKSDFLATMSHEIRTPMNGVIGMTQLLLNTKLTSQQR 1246
Query: 473 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 532
Y+ ++SG +L+++IN++LD +K+E+GKL L+ + ++R ++DD++ LF+ +Q KG+
Sbjct: 1247 HYIEIIRSSGDSLLTVINDILDFSKIEAGKLVLDVIDGDIRQLVDDMMKLFAAPAQHKGI 1306
Query: 533 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592
EL + P L DP R RQI+ NL+GN+IKFTE+G++ + + E + ++++
Sbjct: 1307 ELLYELPAEFPNYLRCDPLRLRQILNNLVGNAIKFTEEGYVLLKIQCDELTCEQVQLQ-- 1364
Query: 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 652
V V DTG GI
Sbjct: 1365 ----------------------------------------------VDVIDTGIGISPLV 1378
Query: 653 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712
+ +F PF Q S SR +GGTG+GL I++ LV M+G +G + + +
Sbjct: 1379 RDNLFKPFTQADSSTSRRYGGTGLGLVITRRLVEMMQGMMGICDTQTTRGSHFWVNLPLE 1438
Query: 713 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD-- 770
+ T + M + G++ L+V+ + ++ + + +Q V +
Sbjct: 1439 KAETVPPVLFENM--------AVLNGLRVLIVEDNLVHQQILQTELNHWQVQSYCVENAV 1490
Query: 771 -QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 829
L+ L Q K ++IL+++ + + S++ F+ +++ F+ +L ++
Sbjct: 1491 LALESLIQYNELHKPYHLILLDETLMQSGESLT--FIKSVKN-DYRFKQIPIILMTTVQY 1547
Query: 830 SRANTSTDGVSIPSVIMKPLR-----SSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL 884
++ + ++ P + KP+R +++L+ + + ++ LP + R
Sbjct: 1548 ELQSSLPEHLATP--LTKPIRQQDLLNALLSIATPHYSPIHTLSPLQTQPLPQHTCR--- 1602
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
+L+ +DN +N +VA L++ G V G++A + L FD MD MP M
Sbjct: 1603 ----LLLAEDNIINQEVAKDMLQQLGCYVTIAHNGREALQRL-EQESFDLILMDCYMPYM 1657
Query: 945 DGYE 948
DG+E
Sbjct: 1658 DGFE 1661
>gi|392982798|ref|YP_006481385.1| sensor/response regulator hybrid [Pseudomonas aeruginosa DK2]
gi|419754930|ref|ZP_14281288.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PADK2_CF510]
gi|384398748|gb|EIE45153.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PADK2_CF510]
gi|392318303|gb|AFM63683.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
DK2]
Length = 918
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 167/551 (30%), Positives = 256/551 (46%), Gaps = 92/551 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + ++A + AKS+FLA +SHEIRTP+NGVLGML +L DT LD
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q YV T +SG AL+S+IN++LD A++ESGKL LE + F+L +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L + + VP L GDP R RQ++ NL+ N++KFT +GH+ V V
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ F++ G L+ SV D+G GI
Sbjct: 550 --------------------------RRFDEGGRE-----------RLLYSVSDSGIGIS 572
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+AQ +F F Q S +R +GG+G+GL+IS+ LV M G I S P G+ F+
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTQFSVDLP 632
Query: 710 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +Q + ++P ++SE L +D + ++R G++VE
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679
Query: 769 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 822
+CL + + + +LV W S+ TL+ Q + L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728
Query: 823 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L + +G+ + + V +K LR ++L +R G E P
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERPDA 788
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFM 937
IL+ +DN VN V L + G AV G+ A E L P+ M
Sbjct: 789 PC--------ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840
Query: 938 DIQMPEMDGYE 948
D +MPEMDG+E
Sbjct: 841 DGEMPEMDGFE 851
>gi|218890338|ref|YP_002439202.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
LESB58]
gi|420138641|ref|ZP_14646539.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CIG1]
gi|421159027|ref|ZP_15618208.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
25324]
gi|218770561|emb|CAW26326.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
LESB58]
gi|403248604|gb|EJY62162.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CIG1]
gi|404548738|gb|EKA57680.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
25324]
Length = 918
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 167/551 (30%), Positives = 256/551 (46%), Gaps = 92/551 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + ++A + AKS+FLA +SHEIRTP+NGVLGML +L DT LD
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q YV T +SG AL+S+IN++LD A++ESGKL LE + F+L +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L + + VP L GDP R RQ++ NL+ N++KFT +GH+ V V
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ F++ G L+ SV D+G GI
Sbjct: 550 --------------------------RRFDEGGRE-----------RLLYSVSDSGIGIS 572
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+AQ +F F Q S +R +GG+G+GL+IS+ LV M G I S P G+ F+
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632
Query: 710 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +Q + ++P ++SE L +D + ++R G++VE
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679
Query: 769 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 822
+CL + + + +LV W S+ TL+ Q + L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728
Query: 823 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L + +G+ + + V +K LR ++L +R G E P
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERPDA 788
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFM 937
IL+ +DN VN V L + G AV G+ A E L P+ M
Sbjct: 789 PC--------ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840
Query: 938 DIQMPEMDGYE 948
D +MPEMDG+E
Sbjct: 841 DGEMPEMDGFE 851
>gi|336246899|ref|YP_004590609.1| hybrid sensory histidine kinase BarA [Enterobacter aerogenes KCTC
2190]
gi|444354993|ref|YP_007391137.1| BarA sensory histidine kinase (= VarS = GacS) [Enterobacter
aerogenes EA1509E]
gi|334732955|gb|AEG95330.1| hybrid sensory histidine kinase BarA [Enterobacter aerogenes KCTC
2190]
gi|443905823|emb|CCG33597.1| BarA sensory histidine kinase (= VarS = GacS) [Enterobacter
aerogenes EA1509E]
Length = 916
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 168/528 (31%), Positives = 251/528 (47%), Gaps = 93/528 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRNTLDEVVTLLAHSAHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I V V +++E ++ +T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTEHGNIDVLVEQRAMSNSRVQIEVQI---HDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN+++ F G K ++ A+ + + ++V V S L L
Sbjct: 522 --PNAITDGFDTHCLAGKKLAYIEANTTAAQSTMELLATTPLEV-VYSPTLSALPDAH-- 576
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKL--GCGFQSKLFL-LANSISSSRANTSTDG 838
+++L V +D S N KL C L L L S +G
Sbjct: 577 ---YDILLAGIPVSMRDLS------NQREKLVRACSLSDTLVLGLPCHAQVSAEELKRNG 627
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 898
V+ + ++KPL S+ L L + +P + L ++ VDDN N
Sbjct: 628 VT--ACLLKPLTSTRLFPVLMASCRA-------QPPVPQPYIDSDKLAMTVMAVDDNPAN 678
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
LK+ A L V+ + G+ A E Q D MDIQMP+MDG
Sbjct: 679 LKLIGALLDDLVQHVILCDSGQDAVE-QAKQSQLDLILMDIQMPDMDG 725
>gi|421179370|ref|ZP_15636962.1| sensor/response regulator hybrid [Pseudomonas aeruginosa E2]
gi|404547238|gb|EKA56250.1| sensor/response regulator hybrid [Pseudomonas aeruginosa E2]
Length = 918
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 167/551 (30%), Positives = 256/551 (46%), Gaps = 92/551 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + ++A + AKS+FLA +SHEIRTP+NGVLGML +L DT LD
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q YV T +SG AL+S+IN++LD A++ESGKL LE + F+L +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L + + VP L GDP R RQ++ NL+ N++KFT +GH+ V V
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ F++ G L+ SV D+G GI
Sbjct: 550 --------------------------RRFDEGGRE-----------RLLYSVSDSGIGIS 572
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+AQ +F F Q S +R +GG+G+GL+IS+ LV M G I S P G+ F+
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632
Query: 710 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +Q + ++P ++SE L +D + ++R G++VE
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------FLQALLERWGLRVE-- 679
Query: 769 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 822
+CL + + + +LV W S+ TL+ Q + L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728
Query: 823 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L + +G+ + + V +K LR ++L +R G E P
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERPDA 788
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFM 937
IL+ +DN VN V L + G AV G+ A E L P+ M
Sbjct: 789 PC--------ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840
Query: 938 DIQMPEMDGYE 948
D +MPEMDG+E
Sbjct: 841 DGEMPEMDGFE 851
>gi|452966995|gb|EME72002.1| Signal transduction histidine kinase [Magnetospirillum sp. SO-1]
Length = 1523
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 154/524 (29%), Positives = 253/524 (48%), Gaps = 69/524 (13%)
Query: 428 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 487
+KAEAA AK+ FLA +SHEIRTPMN ++GM + + TEL+ Q+DYVR Q SG+ L+
Sbjct: 868 EKAEAASQAKADFLANMSHEIRTPMNAIIGMSHLALKTELNPRQKDYVRKIQQSGQHLLG 927
Query: 488 LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 547
+IN++LD +K+E+GKL +E L +LD+V +L + K+ KG+EL + VP L+
Sbjct: 928 IINDILDFSKIEAGKLAVEHTEVYLDKVLDNVANLITEKTTAKGLELVFDVGSDVPNDLV 987
Query: 548 GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 607
GDP R QI+ N N++KFTE G I + V L +++ + + E+ +
Sbjct: 988 GDPLRLGQILINYANNAVKFTEAGEIAIRVRLGQDLGGEVVLRFEVRDT----------- 1036
Query: 608 RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667
G G+ E + R+F F Q S
Sbjct: 1037 -------------------------------------GIGLSEEQRGRLFQSFQQADSST 1059
Query: 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN 727
+R +GGTG+GL+ISK L M G +G S P GSTF FTA G G +++
Sbjct: 1060 TRKYGGTGLGLAISKKLAELMGGGVGVESEPGQGSTFWFTATLGKGKP------RRKLLP 1113
Query: 728 QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKI 784
+P+ +G + LVVD V + + +V+ V ++ + + G
Sbjct: 1114 RPD-----LRGRRMLVVDDNENARAVLVDMLAAMSFKVDDVESGALAVEAVRRTMGGDDA 1168
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
++ ++ ++ D + T + ++ LG ++ ++ + + I V
Sbjct: 1169 YQIVFLDWQMPGMD-GIETAYA--IKGLGL-TRTPHMIMVTAHGREEVMAGAEHAGIEEV 1224
Query: 845 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL--LLGRKILIVDDNNVNLKVA 902
++KP+ S+L + R++G + + +++ L L G ++L+V+DN+ N +VA
Sbjct: 1225 LIKPVNPSLLFDAAMRSLGAVPEDEPDDSAGAAVNEADLSGLRGLRVLLVEDNDFNQQVA 1284
Query: 903 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+ L G V E G A E++ +D MD+QMP MDG
Sbjct: 1285 SELLADGGVVVELAENGAVAVEMV-GAAPYDMVLMDMQMPVMDG 1327
>gi|254236414|ref|ZP_04929737.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719]
gi|126168345|gb|EAZ53856.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719]
Length = 918
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 167/551 (30%), Positives = 256/551 (46%), Gaps = 92/551 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + ++A + AKS+FLA +SHEIRTP+NGVLGML +L DT LD
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q YV T +SG AL+S+IN++LD A++ESGKL LE + F+L +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L + + VP L GDP R RQ++ NL+ N++KFT +GH+ V V
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ F++ G L+ SV D+G GI
Sbjct: 550 --------------------------RRFDEGGHE-----------RLLYSVSDSGIGIS 572
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+AQ +F F Q S +R +GG+G+GL+IS+ LV M G I S P G+ F+
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632
Query: 710 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +Q + ++P ++SE L +D + ++R G++VE
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679
Query: 769 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 822
+CL + + + +LV W S+ TL+ Q + L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728
Query: 823 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L + +G+ + + V +K LR ++L +R G E P
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERPDA 788
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFM 937
IL+ +DN VN V L + G AV G+ A E L P+ M
Sbjct: 789 PC--------ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840
Query: 938 DIQMPEMDGYE 948
D +MPEMDG+E
Sbjct: 841 DGEMPEMDGFE 851
>gi|260779461|ref|ZP_05888351.1| sensory box histidine kinase/response regulator [Vibrio
coralliilyticus ATCC BAA-450]
gi|260604270|gb|EEX30574.1| sensory box histidine kinase/response regulator [Vibrio
coralliilyticus ATCC BAA-450]
Length = 1205
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 158/523 (30%), Positives = 260/523 (49%), Gaps = 74/523 (14%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
AKS FLA +SHEIRTPMN ++GM + + T+L Q++Y++ + S +L+ LIN++LD
Sbjct: 480 AKSDFLANMSHEIRTPMNAIIGMSYLALKTDLSKAQRNYIQKVKLSADSLLGLINDILDF 539
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+E+GKL++E V F+L +LD++ +L ++ ++G+EL ++I VP L+GDP R Q
Sbjct: 540 SKIEAGKLDIENVDFHLENVLDNISNLVGLRASERGLELLIHIDRDVPTALVGDPLRLGQ 599
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
I+ NL N++KFTE+G I V++ L +
Sbjct: 600 ILINLANNAVKFTEQGEIKVSIALEK---------------------------------- 625
Query: 616 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
+DG+ K S D +G G+ E +++F F Q S +R +GGTG
Sbjct: 626 ----KDGNDITLKFSVTD----------SGIGMTPEQCNKLFNKFTQADSSTTRKYGGTG 671
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735
+GL+ISK L M G+IG S GSTF+FT G S+ +Q+ V E
Sbjct: 672 LGLAISKELCQLMGGDIGVTSEQGKGSTFSFTVQLG----VSHALKQEQL-----LVPKE 722
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKIINMILVEQ 792
+K LVVD + ++ L + V++ L L + + + ++++ +
Sbjct: 723 LGQLKILVVDDNASARLIVEDILESLQFETTSVTNVDSALDELEEAITNKQPYDLVISDW 782
Query: 793 EVWEKD-TSVSTLFVNNLRKLGCGFQSKLFLLA----NSISSSRANTSTDGVSIPSVIMK 847
++ KD ++ + + +L Q KL +L ++ + N ++ PS++ K
Sbjct: 783 QMPVKDGIDLAEIMWD---RLAEREQPKLLMLTAYGREELTDAFINRQ---LTPPSILDK 836
Query: 848 PLRSSMLAASLQRAMGVGNKGNIRN--WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAG 905
P+ SS L ++ GV R+ E ++ L G ++L+V+DN +N ++A
Sbjct: 837 PVTSSHLFDAIVTLYGVEGSRVSRSDVEEQTQLANAQQLAGAQLLLVEDNEINQELATEL 896
Query: 906 LKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L+ V E G+ A + L H FD MD QMP MDGYE
Sbjct: 897 LEGQQVHVTIAENGQVAID-LYKSHDFDGILMDCQMPVMDGYE 938
>gi|254443535|ref|ZP_05057011.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
gi|198257843|gb|EDY82151.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
Length = 1302
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 206/375 (54%), Gaps = 53/375 (14%)
Query: 420 YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQ 479
+ + + AE+ AKS FLAT+SHE+RTPMNGV+ M ++L+DT+LD TQ+DY T +
Sbjct: 906 HQELTRARDAAESNTKAKSAFLATMSHELRTPMNGVISMANILLDTDLDETQRDYTSTIR 965
Query: 480 ASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 539
SG++L++L+N++LD +K E+GKL +E +L+ +L+ +SL S +Q K ++L ++
Sbjct: 966 DSGESLLTLLNDILDLSKAEAGKLSIEPFELDLKELLNQSVSLLSTTAQQKNIQLETNVT 1025
Query: 540 DRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNT 599
D P LIGD GR +Q+I NL GN+IKFTE GH+ + V +E+ ++K+
Sbjct: 1026 DDTPTLLIGDAGRIKQVILNLTGNAIKFTEDGHVKINVSKLED------------TNKH- 1072
Query: 600 LSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659
+N+ + +EDTG GI A SR+F P
Sbjct: 1073 -----------------------------------VNIRIEIEDTGVGISETAASRLFRP 1097
Query: 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNE 719
F Q S SR GGTG+GL+ISK +V M GEIG S+ GSTF FT + +
Sbjct: 1098 FEQADGSHSRRFGGTGLGLAISKEIVELMDGEIGVDSVLGKGSTFWFTLKLEKVDIDAQQ 1157
Query: 720 HN-SQQMNNQPNSVSSEFQG--MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS 776
+ + S ++G +K L+ + PI +V+R ++++G+ ++ + ++ L
Sbjct: 1158 QTLISKSKEKSAKKSQRWKGPPLKILIAEDLPINQRVTRLQLKKIGLTADLAENGVEVLD 1217
Query: 777 QIASGSKIINMILVE 791
+ SK ++IL++
Sbjct: 1218 AVR--SKRYDVILMD 1230
Score = 42.4 bits (98), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
KILI +D +N +V LK+ G E G + + + ++D MD QMP MDGY
Sbjct: 1181 KILIAEDLPINQRVTRLQLKKIGLTADLAENGVEVLDAVRS-KRYDVILMDCQMPVMDGY 1239
Query: 948 E 948
+
Sbjct: 1240 Q 1240
>gi|304399231|ref|ZP_07381098.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB]
gi|304353285|gb|EFM17665.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB]
Length = 909
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 170/528 (32%), Positives = 251/528 (47%), Gaps = 95/528 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGVLG ++ T+L TQ+DY++T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQLRTTQRDYMQTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LEA+ F LRA LD+ L L + + DKG+EL V VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHDKGLELTVVCDSSVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGD R +QI+ NL+GN+IKFTEKG+I + V + V+ VE E+
Sbjct: 403 IGDALRLQQILINLIGNAIKFTEKGYIGLRVG--QRVITQSRVELEI------------- 447
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
VED+G GI + Q+++F F Q S
Sbjct: 448 ---------------------------------QVEDSGIGISEQQQTQMFQAFRQADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M GEI F S P+ GS F Q++
Sbjct: 475 ISRRHGGTGLGLVITQKLVREMGGEITFSSQPDQGSVFVIRV---------------QLD 519
Query: 727 NQPNS-----VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN+ V + V+P A + + +Q++ S+ L+ L
Sbjct: 520 LNPNAPGMPRVLDALSHARIAYVEPDAYVASAALEMLSATPLQID-YSETLEGLKAPHYP 578
Query: 782 SKIINM-ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
++ M + + Q + ++ L + + S + LLA+ + +
Sbjct: 579 LLLMAMPVDISQPELLNERRINGLL-DRADNVLMALPSPMMLLADELKAR---------G 628
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRKILIVDDNNVNL 899
I I KP+ SL R + + + R ELP S R L ++ VDDN NL
Sbjct: 629 IDGCIAKPI-------SLTRLLPMLLDLHTRQMSELPP-SPR---LPLTVMAVDDNPANL 677
Query: 900 KVAAAGLKRYGAAVVCVERGKKAT-ELLMPPHQFDACFMDIQMPEMDG 946
K+ A L+ ++ + A E P D MDIQMPE+DG
Sbjct: 678 KLIGALLEEQVQNILLCSSAEHAIREARQQP--LDVILMDIQMPEIDG 723
>gi|254242148|ref|ZP_04935470.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192]
gi|126195526|gb|EAZ59589.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192]
Length = 918
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 167/551 (30%), Positives = 256/551 (46%), Gaps = 92/551 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + ++A + AKS+FLA +SHEIRTP+NGVLGML +L DT LD
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q YV T +SG AL+S+IN++LD A++ESGKL LE + F+L +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L + + VP L GDP R RQ++ NL+ N++KFT +GH+ V V
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ F++ G L+ SV D+G GI
Sbjct: 550 --------------------------RRFDEGGHE-----------RLLYSVSDSGIGIS 572
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+AQ +F F Q S +R +GG+G+GL+IS+ LV M G I S P G+ F+
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632
Query: 710 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +Q + ++P ++SE L +D + ++R G++VE
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679
Query: 769 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 822
+CL + + + +LV W S+ TL+ Q + L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728
Query: 823 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L + +G+ + + V +K LR ++L +R G E P
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERPDA 788
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFM 937
IL+ +DN VN V L + G AV G+ A E L P+ M
Sbjct: 789 PC--------ILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840
Query: 938 DIQMPEMDGYE 948
D +MPEMDG+E
Sbjct: 841 DGEMPEMDGFE 851
>gi|395225868|ref|ZP_10404378.1| signal transduction histidine kinase [Thiovulum sp. ES]
gi|394445947|gb|EJF06805.1| signal transduction histidine kinase [Thiovulum sp. ES]
Length = 906
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 151/554 (27%), Positives = 266/554 (48%), Gaps = 101/554 (18%)
Query: 416 VEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYV 475
V+++ + + E+ K ++A+ AKS F+AT+SHEIRTPMN +LG+ ++L +T+LD Q ++
Sbjct: 233 VQKEKNTLEEIAKVEKSANEAKSIFIATMSHEIRTPMNAILGLTEILQNTDLDQEQYEFT 292
Query: 476 RTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELA 535
T SG +L+ +IN++LD +KVE+G+LELE ++ +L +++DV+ L + +KGV L
Sbjct: 293 ETIYNSGNSLLDIINDILDYSKVEAGRLELEELNTDLENLVNDVVFLLEHNANEKGVRLI 352
Query: 536 VYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 595
V P+ + DP R +Q++ NL+GN+IKFT+ GH+ + V EE
Sbjct: 353 VDYCSTCPQFIKCDPSRLKQVLINLVGNAIKFTKSGHVLLRVGKKEE------------- 399
Query: 596 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 655
NL+ +EDTG GIP +
Sbjct: 400 ----------------------------------------NLLFEIEDTGIGIPEKKLKN 419
Query: 656 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSS 715
+FT F QV S +R +GG+G+GL+ISK ++ M G+IG S+ +IGS F F
Sbjct: 420 LFTIFTQVDSSTTREYGGSGLGLAISKKMIELMGGKIGVQSVLHIGSKFYFEIPL----- 474
Query: 716 TSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 775
+ S+++ + S +G+KAL+VD V ++ G+++ +++ + +
Sbjct: 475 ----YESEEIKDLSEKKS--LKGVKALIVDDYETNRIVFEGQLEEFGMEIVSIAESREAI 528
Query: 776 SQIASGSKI---INMILVEQEVWEKDTSVSTLFVNNL---RKLGCGFQSKLFLLANSISS 829
S + +K +++L +Q + F++ L +K+ ++ + S
Sbjct: 529 SILEEANKKGEPFDIVLTDQNMP---------FLDGLSLSKKIKDNKNISSSIVVVTSSG 579
Query: 830 SRANTST-DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR- 887
R + + ++KP+ + L +G R+++ P R++L +
Sbjct: 580 HRGSFDEFEKAGASGYLVKPIDRKTMNKFLATVLGT------RDFKNPPFITRYMLNQKM 633
Query: 888 -------------KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 934
K+L+ +D N+ V LK + V G++A L F+
Sbjct: 634 KQSKDTEAKKFIGKVLVAEDTKANVIVIKTLLKSFNLEVSIANDGQEALN-LYKSENFNL 692
Query: 935 CFMDIQMPEMDGYE 948
FMD++MP MDG E
Sbjct: 693 VFMDLRMPNMDGLE 706
>gi|386036266|ref|YP_005956179.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae KCTC
2242]
gi|339763394|gb|AEJ99614.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae KCTC
2242]
Length = 830
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 166/529 (31%), Positives = 256/529 (48%), Gaps = 95/529 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QI+TNL+GN+IKFTE G+I V V + + + V+ E+ +T G P
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ G + V+ A+ + + ++V + S L++
Sbjct: 522 --PNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 840
+++LV V +D S L K C + L L S DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLAK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629
Query: 841 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
+ ++KPL ++ L +L A+ I + +LP ++ VDDN
Sbjct: 630 --ACLLKPLTTTRLLPALVATSHALASAPLMQIDSHKLP----------MTVMAVDDNPA 677
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L V+ + G++A + Q D MDIQMP+MDG
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-KAKQLQMDLILMDIQMPDMDG 725
>gi|372275091|ref|ZP_09511127.1| hybrid sensory histidine kinase BarA [Pantoea sp. SL1_M5]
Length = 909
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 176/538 (32%), Positives = 253/538 (47%), Gaps = 115/538 (21%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGVLG ++ T+L TQ+DY++T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQLRTTQRDYMQTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LEA+ F LRA LD+ L L + + DKG+EL V VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHDKGLELTVVCDSSVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGD R +QI+ NL+GN+IKFTEKG+I + V + V+ VE E
Sbjct: 403 IGDALRLQQILINLIGNAIKFTEKGYIGLRVG--QRVITQSRVELE-------------- 446
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ VED+G GI + Q+++F F Q S
Sbjct: 447 --------------------------------IQVEDSGIGISEQQQTQLFQAFRQADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M GEI F S P+ GSTF Q++
Sbjct: 475 ISRRHGGTGLGLVITQKLVREMGGEITFSSQPDKGSTFVIRV---------------QLD 519
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS----QI---- 778
PN+ GM PR + A +S I + V S L+ LS QI
Sbjct: 520 LNPNA-----PGM------PRVLDA-LSHARIAYVEADANVASAALEMLSATPLQIDYSE 567
Query: 779 ------ASGSKIINMIL---VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 829
AS ++ M + + Q + ++ L + + S + LLA+ +
Sbjct: 568 TLEGLKASHYPLLLMAMPVDISQPELLNERMINALL-DRADNVLMALPSPMMLLADELKV 626
Query: 830 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRK 888
I I KP+ SL R + + + R ELP +S R L
Sbjct: 627 R---------GIDGCIAKPI-------SLTRLLPMLLDLHTRQISELP-LSPR---LPLT 666
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ ++ + A D MDIQMP++DG
Sbjct: 667 VMAVDDNPANLKLIGALLEEQVQNILLCSSAEHAIREAR-QQSLDVILMDIQMPDIDG 723
>gi|365140200|ref|ZP_09346255.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
4_1_44FAA]
gi|363653516|gb|EHL92465.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
4_1_44FAA]
Length = 916
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 166/529 (31%), Positives = 256/529 (48%), Gaps = 95/529 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QI+TNL+GN+IKFTE G+I V V + + + V+ E+ +T G P
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ G + V+ A+ + + ++V + S L++
Sbjct: 522 --PNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 840
+++LV V +D S L K C + L L S DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLAK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629
Query: 841 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
+ ++KPL ++ L +L A+ I + +LP ++ VDDN
Sbjct: 630 --ACLLKPLTTTRLLPALVATSHALASAPLMQIDSHKLP----------MTVMAVDDNPA 677
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L V+ + G++A + Q D MDIQMP+MDG
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-KAKQLQMDLILMDIQMPDMDG 725
>gi|440760670|ref|ZP_20939775.1| BarA sensory histidine kinase ( VarS GacS) [Pantoea agglomerans
299R]
gi|436425586|gb|ELP23318.1| BarA sensory histidine kinase ( VarS GacS) [Pantoea agglomerans
299R]
Length = 909
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 170/528 (32%), Positives = 251/528 (47%), Gaps = 95/528 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGVLG ++ T+L TQ+DY++T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQLRTTQRDYMQTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LEA+ F LRA LD+ L L + + DKG+EL V VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHDKGLELTVVCDSSVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGD R +QI+ NL+GN+IKFTEKG+I + V + V+ VE E+
Sbjct: 403 IGDALRLQQILINLIGNAIKFTEKGYIGLRVG--QRVITQSRVELEI------------- 447
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
VED+G GI + Q+++F F Q S
Sbjct: 448 ---------------------------------QVEDSGIGISEQQQTQMFQAFRQADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M GEI F S P+ GS F Q++
Sbjct: 475 ISRRHGGTGLGLVITQKLVREMGGEITFSSQPDQGSVFVIRV---------------QLD 519
Query: 727 NQPNS-----VSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN+ V + V+P A + + +Q++ S+ L+ L
Sbjct: 520 LNPNAPGMPRVLDALSHARIAYVEPDTYVASAALEMLSATPLQID-YSETLEGLKAPHYP 578
Query: 782 SKIINM-ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
++ M + + Q + ++ L + + S + LLA+ + +
Sbjct: 579 LLLMAMPVDISQPELLNERRINGLL-DRADNVLMALPSPMMLLADELKAR---------G 628
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRKILIVDDNNVNL 899
I I KP+ SL R + + + R ELP S R L ++ VDDN NL
Sbjct: 629 IDGCIAKPI-------SLTRLLPMLLDLHTRQMSELPP-SPR---LPLTVMAVDDNPANL 677
Query: 900 KVAAAGLKRYGAAVVCVERGKKAT-ELLMPPHQFDACFMDIQMPEMDG 946
K+ A L+ ++ + A E P D MDIQMPE+DG
Sbjct: 678 KLIGALLEEQVQNILLCSSAEHAIREARQQP--LDVILMDIQMPEIDG 723
>gi|386346558|ref|YP_006044807.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
6578]
gi|339411525|gb|AEJ61090.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
6578]
Length = 785
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 166/536 (30%), Positives = 264/536 (49%), Gaps = 107/536 (19%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
+KS+FLA +SHEIRTP++ +LGM ++L DT LD Q+DYV+ + SG+AL++LIN++LD
Sbjct: 139 SKSRFLANMSHEIRTPLHTILGMTELLEDTRLDEEQRDYVQQIRFSGEALLALINDILDY 198
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+E+GKL +E + F+L +++ + + S ++ K +E+ V I + VP + GDP R RQ
Sbjct: 199 SKIEAGKLPMEIIDFDLYEVVEQAVGMVSLQAHKKHLEVVVDIGEEVPRRVKGDPLRIRQ 258
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
I+ NL N++KFTEKGH+F V LV++ + +W F
Sbjct: 259 ILVNLANNAVKFTEKGHVFCRVQLVQQ------------------------RKGVAWVAF 294
Query: 616 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
+VEDTG GIP + R+F F Q+ S +R GGTG
Sbjct: 295 ------------------------TVEDTGIGIPENKKHRLFRVFSQIDESTTRRFGGTG 330
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735
+GL+ISK LV MKGEIG S GS+F F S +P E
Sbjct: 331 LGLAISKSLVEMMKGEIGVRSREGEGSSFWFLLPLPIVESY-----------EPPVSLGE 379
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLSQIASGSKIINMILVE- 791
+ L+V+ P+ +V ++QR ++ S + L+ + + A +I +++LV+
Sbjct: 380 VGSL--LLVEDYPLTRRVLHRYLQRYFPHIDDASTGAEALRKMRERAERGEIYDLVLVDL 437
Query: 792 ----QEVWE------KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
+ W+ D S++ + + +G G ++K+ LL
Sbjct: 438 TLPGMDGWQFASEVNADRSINDTRMVLMSPMGEGAEAKMKLLK---------------WF 482
Query: 842 PSVIMKPLRSSMLAASLQRAMG-------VGNKGNIRNWELPSMSLRHLLLGRKILIVDD 894
+ + KP+R L ++ R + V +G E P+ + +L IL+ +D
Sbjct: 483 DAYLAKPVRKDDLYRTVARVVNEEMELEGVEAEGPEGGEERPADAGNYL-----ILVAED 537
Query: 895 NNVNLKVAAAGLKRYGAAVVCVERGKKATE--LLMPPHQFDACFMDIQMPEMDGYE 948
+ VN ++ L R G V GK+A E L + P D FMD+QMPEM+GY+
Sbjct: 538 HIVNQELFFTILSRLGYRVELAGNGKEAVEKGLALKP---DLIFMDVQMPEMNGYD 590
>gi|152971650|ref|YP_001336759.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238896247|ref|YP_002920983.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|378980364|ref|YP_005228505.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|402779252|ref|YP_006634798.1| BarA sensory histidine kinase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|419972587|ref|ZP_14488015.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419980265|ref|ZP_14495551.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419983491|ref|ZP_14498641.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991224|ref|ZP_14506191.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419997353|ref|ZP_14512150.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420001152|ref|ZP_14515809.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420008188|ref|ZP_14522679.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420013715|ref|ZP_14528025.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420019361|ref|ZP_14533554.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420024852|ref|ZP_14538863.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420029839|ref|ZP_14543667.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420035568|ref|ZP_14549231.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420042434|ref|ZP_14555927.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420048142|ref|ZP_14561457.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420053213|ref|ZP_14566392.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420058687|ref|ZP_14571698.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420073224|ref|ZP_14585853.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420075588|ref|ZP_14588063.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420081440|ref|ZP_14593748.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421909840|ref|ZP_16339643.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|421914520|ref|ZP_16344167.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|424932058|ref|ZP_18350430.1| Hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425075192|ref|ZP_18478295.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425082934|ref|ZP_18486031.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|425085828|ref|ZP_18488921.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|425093032|ref|ZP_18496116.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|428932773|ref|ZP_19006343.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae JHCK1]
gi|428940431|ref|ZP_19013515.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae VA360]
gi|150956499|gb|ABR78529.1| hybrid sensory histidine kinase in two-component regulatory system
with UvrY [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238548565|dbj|BAH64916.1| hybrid sensory histidine kinase in two-component regulatory system
with UvrY [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|364519775|gb|AEW62903.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397346576|gb|EJJ39690.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397350996|gb|EJJ44082.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397355123|gb|EJJ48133.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397363146|gb|EJJ55789.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397364573|gb|EJJ57203.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397372677|gb|EJJ65161.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397379798|gb|EJJ71989.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397383749|gb|EJJ75883.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397389053|gb|EJJ81003.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397398155|gb|EJJ89820.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397402298|gb|EJJ93901.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397407585|gb|EJJ98970.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397416086|gb|EJK07265.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397416236|gb|EJK07411.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397424630|gb|EJK15528.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397436525|gb|EJK27111.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397438200|gb|EJK28718.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397448087|gb|EJK38266.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397453205|gb|EJK43267.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|402540194|gb|AFQ64343.1| BarA sensory histidine kinase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|405595395|gb|EKB68785.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405599253|gb|EKB72429.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|405606337|gb|EKB79329.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405611374|gb|EKB84142.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|407806245|gb|EKF77496.1| Hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|410116240|emb|CCM82268.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410123276|emb|CCM86792.1| BarA sensory histidine kinase (= VarS = GacS) [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|426302308|gb|EKV64515.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae VA360]
gi|426306762|gb|EKV68858.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae JHCK1]
Length = 916
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 166/529 (31%), Positives = 256/529 (48%), Gaps = 95/529 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QI+TNL+GN+IKFTE G+I V V + + + V+ E+ +T G P
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ G + V+ A+ + + ++V + S L++
Sbjct: 522 --PNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 840
+++LV V +D S L K C + L L S DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLAK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629
Query: 841 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
+ ++KPL ++ L +L A+ I + +LP ++ VDDN
Sbjct: 630 --ACLLKPLTTTRLLPALVATSHALASAPLMQIDSHKLP----------MTVMAVDDNPA 677
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L V+ + G++A + Q D MDIQMP+MDG
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-KAKQLQMDLILMDIQMPDMDG 725
>gi|406830344|ref|ZP_11089938.1| multi-sensor hybrid histidine kinase [Schlesneria paludicola DSM
18645]
Length = 1165
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 172/564 (30%), Positives = 277/564 (49%), Gaps = 77/564 (13%)
Query: 402 VGHIFQ--ATVNRI--AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
VG IF+ T I AK+ ED + K+ AE+A+ AK +FLA VSHEIRTPMN +LG
Sbjct: 481 VGSIFKWFGTCTDITDAKLAEDE--LRVAKETAESANRAKGEFLANVSHEIRTPMNAILG 538
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
+ ++ +DT L Q+ + T +++ L+++IN++LD +K+E+GKLEL +F+LR +L
Sbjct: 539 LTELTLDTSLSDIQRQSLSTVKSAADNLLTIINDLLDFSKIEAGKLELFPSNFSLRTVLG 598
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
D L + ++ KG+EL +I D V ++LIGDPGR RQ++ NL+GN+IKFT++G + V+V
Sbjct: 599 DTLRALAVRAHKKGLELVCHIQDDVVDSLIGDPGRLRQVLLNLIGNAIKFTDEGEVVVSV 658
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 637
V V+ +V E S
Sbjct: 659 ETVSGVLPHCDVALEFS------------------------------------------- 675
Query: 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697
V DTG GIP E Q IF F Q S +R +GGTG+GL+I+ LV M GEI S
Sbjct: 676 ---VRDTGIGIPFEKQETIFNAFEQEDASTTRKYGGTGLGLTIAARLVACMGGEILVESE 732
Query: 698 PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYH 757
GS F+F+A F +H P++ + +K L+VD +
Sbjct: 733 IGSGSRFSFSARF--------KHQPLSSVPAPSASADLLYQLKVLIVDDNATNRSILGEW 784
Query: 758 IQRLGIQVEVVSD---QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814
++R + VSD + L++ + + ++L++ + E D V +R++
Sbjct: 785 LRRWKMNPCTVSDGIAAIDILAEAFNAGQPFALVLLDLRMPEMD---GLEVVTRIREIP- 840
Query: 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM--GVGNKGNIRN 872
G + +L +S T + I + ++KP + S L ++ R M + + N +
Sbjct: 841 GLSNVRVVLLSSEDRPGDIARTRDLGIKAQLLKPFQQSELLETIYRVMNGAIPQQPNQTD 900
Query: 873 W-ELPSMSLRHLLLGR----KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM 927
+P+ L R +IL +D++ N ++ L G V GK+A L
Sbjct: 901 EPRIPTERAARPLSSRVAPLRILAAEDHDFNAQLLDQLLSGQGHDVHMATDGKQA--LAQ 958
Query: 928 PPH-QFDACFMDIQMPEMDGYEML 950
H ++D +DI MPE+DG++++
Sbjct: 959 AIHGEYDLMLLDIHMPELDGFQVI 982
>gi|390437403|ref|ZP_10225941.1| hybrid sensory histidine kinase BarA [Pantoea agglomerans IG1]
Length = 909
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 176/538 (32%), Positives = 253/538 (47%), Gaps = 115/538 (21%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGVLG ++ T+L TQ+DY++T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTQLRTTQRDYMQTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LEA+ F LRA LD+ L L + + DKG+EL V VP+ +
Sbjct: 343 SIINDVLDFSKLEAGKLMLEAIPFPLRATLDETLVLLAPSAHDKGLELTVVCDSSVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGD R +QI+ NL+GN+IKFTEKG+I + V + V+ VE E
Sbjct: 403 IGDALRLQQILINLIGNAIKFTEKGYIGLRVG--QRVITQSRVELE-------------- 446
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ VED+G GI + Q+++F F Q S
Sbjct: 447 --------------------------------IQVEDSGIGISEQQQTQLFQAFRQADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M GEI F S P+ GSTF Q++
Sbjct: 475 ISRRHGGTGLGLVITQKLVREMGGEITFSSQPDKGSTFVIRV---------------QLD 519
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS----QI---- 778
PN+ GM PR + A +S I + V S L+ LS QI
Sbjct: 520 LNPNA-----PGM------PRVLDA-LSHARIAYVEADANVASAALEMLSATPLQIDYSE 567
Query: 779 ------ASGSKIINMIL---VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 829
AS ++ M + + Q + ++ L + + S + LLA+ +
Sbjct: 568 TLEGLKASHYPLLLMAMPVDISQPELLNERMINALL-DRADNVLMALPSPMMLLADELKV 626
Query: 830 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNW-ELPSMSLRHLLLGRK 888
I I KP+ SL R + + + R ELP +S R L
Sbjct: 627 R---------GIDGCIAKPI-------SLTRLLPMLLDLHTRQISELP-LSPR---LPLT 666
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ ++ + A D MDIQMP++DG
Sbjct: 667 VMAVDDNPANLKLIGALLEEQVQNILLCSSAEHAIREAR-QQSLDVILMDIQMPDIDG 723
>gi|449047540|ref|ZP_21730833.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae hvKP1]
gi|448877405|gb|EMB12371.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae hvKP1]
Length = 916
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 166/529 (31%), Positives = 256/529 (48%), Gaps = 95/529 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QI+TNL+GN+IKFTE G+I V V + + + V+ E+ +T G P
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ G + V+ A+ + + ++V + S L++
Sbjct: 522 --PNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 840
+++LV V +D S L K C + L L S DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLAK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629
Query: 841 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
+ ++KPL ++ L +L A+ I + +LP ++ VDDN
Sbjct: 630 --ACLLKPLTTTRLLPALVATSHALASAPLMQIDSHKLP----------MTVMAVDDNPA 677
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L V+ + G++A + Q D MDIQMP+MDG
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-KAKQLQMDLILMDIQMPDMDG 725
>gi|330012191|ref|ZP_08307324.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
MS 92-3]
gi|328533893|gb|EGF60561.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
MS 92-3]
Length = 916
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 166/529 (31%), Positives = 256/529 (48%), Gaps = 95/529 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QI+TNL+GN+IKFTE G+I V V + + + V+ E+ +T G P
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ G + V+ A+ + + ++V + S L++
Sbjct: 522 --PNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 840
+++LV V +D S L K C + L L S DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLAK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629
Query: 841 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
+ ++KPL ++ L +L A+ I + +LP ++ VDDN
Sbjct: 630 --ACLLKPLTTTRLLPALVATSHALASAPLMQIDSHKLP----------MTVMAVDDNPA 677
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L V+ + G++A + Q D MDIQMP+MDG
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-KAKQLQMDLILMDIQMPDMDG 725
>gi|428224952|ref|YP_007109049.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
gi|427984853|gb|AFY65997.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Length = 1042
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 167/524 (31%), Positives = 259/524 (49%), Gaps = 68/524 (12%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
A+SQF A +SHEIRTPMN V+G+ +L++TEL Q+ +V + SG AL+ L+NE+LD
Sbjct: 391 ARSQFFAAMSHEIRTPMNAVIGLTGLLLETELSPQQRQFVEIIRGSGNALLDLVNEILDF 450
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+E+GKLELE F LR ++ L L + ++++KG+ELA ++ VP + GD GR RQ
Sbjct: 451 SKLEAGKLELELQPFELRLGIEAALDLLAQQAEEKGLELAYILAGEVPSVIYGDAGRLRQ 510
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
I+ NL+GN +KFT +G + V+V N L P
Sbjct: 511 ILVNLVGNGLKFTHQGEVVVSV------------------GANRLLFAP----------- 541
Query: 616 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
+ Q S + +++ L SV DTG GIP E +R+F F Q S+SR +GGTG
Sbjct: 542 -SGAQRRSPPSWAAATDPWYELQFSVRDTGIGIPPERMNRLFHAFSQADVSVSRQYGGTG 600
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF-GNGSSTSNEHNSQQMNNQPNSVSS 734
+GL IS+ L M G + S N GSTF FT V + + N Q+ ++
Sbjct: 601 LGLVISRSLSELMGGRMWVESQVNQGSTFFFTLVVQAPADAPLEDDNLLQLRDR------ 654
Query: 735 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEV 794
LVVD P+ ++ + G+ V + + ++ + G + ++++V +
Sbjct: 655 -----HLLVVDDNPVHRRLLVLQGESWGMAVTALGSPEEAIAWV-KGGNLCDLLVVSCQ- 707
Query: 795 WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS-TDGVSIPSVIMKPLRSSM 853
+ S +TL + G L + +++ ++G+ SV+MKP++ S
Sbjct: 708 -QSAMSDATLMAKLRSLVDPGLPGVLLRPTEQVLGGVPDSAYSEGI---SVLMKPVKQSH 763
Query: 854 LAASLQRAMGVGNKGNIRNWELPS----------MSLRHLLLGRKILIVDDNNVNLKVAA 903
L +L VG + R PS M H L +IL+ DDN +N KVA
Sbjct: 764 LYDAL-----VGLLMHDRTRRRPSQVFSLSADRQMGQHHPL---RILLADDNRLNQKVAT 815
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
L+R G V+ G+ E L +D +D+QMPE+DG+
Sbjct: 816 QLLRRLGYEADVVDHGRAVLEALE-QQVYDVVLLDMQMPELDGF 858
>gi|157148322|ref|YP_001455641.1| hybrid sensory histidine kinase BarA [Citrobacter koseri ATCC
BAA-895]
gi|157085527|gb|ABV15205.1| hypothetical protein CKO_04139 [Citrobacter koseri ATCC BAA-895]
Length = 918
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 169/540 (31%), Positives = 259/540 (47%), Gaps = 116/540 (21%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNTTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V + + + +V+ E+ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVE--KRALSNTKVQIEI-QIRDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
PN +S D P R V + RL VE + QC + S + +
Sbjct: 522 --PNVIS-----------DAPPTRCLVGK----RLAY-VEPNATAAQCTLDMLSDTPL-- 561
Query: 787 MILVEQEVWEKDTSVSTLFVNN----LRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
EV T S L +++ L + F L + ++ + A T +++P
Sbjct: 562 ------EVIYSPT-FSALPLDHYDILLISVPVTFNEPLTMQQERLAKAAAMTDFLLLALP 614
Query: 843 ----------------SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG 886
+ ++KPL S+ L +L + N + + +
Sbjct: 615 CHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCHL-------NQHVEPLLTDENKIA 667
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ V + G +A E QFD MDIQMP+MDG
Sbjct: 668 MTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVE-RAKQMQFDLILMDIQMPDMDG 726
>gi|401765013|ref|YP_006580020.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400176547|gb|AFP71396.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 919
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 169/541 (31%), Positives = 256/541 (47%), Gaps = 118/541 (21%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + +EL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRGTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F +G TS
Sbjct: 475 ISRRHGGTGLGLVITQRLVNEMGGDISFHSQPNRGSTFWFYINLDLNPNALTDGPVTSCL 534
Query: 720 HNSQQMNNQPNSVSSEFQGMKALVVDPRPI-------RAKVSRYHIQRLGIQVEVVSDQL 772
+ + +PN+ +++ + L P + V Y I +GI V +
Sbjct: 535 NGKRLAYVEPNAAAAQCT-LDILSTTPLEVVYSPTFSALAVEHYDILLMGIPVTFTGE-- 591
Query: 773 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 832
+ ++QE K S++ L L C Q L N
Sbjct: 592 ---------------LTMQQERLAKAASMTDYL---LLALPCHAQINAEELKN------- 626
Query: 833 NTSTDGVSIPSVIMKPLRSSMLAASL-------QRAMGVGNKGNIRNWELPSMSLRHLLL 885
DG + + ++KPL ++ L +L Q A+ + N +LP MS
Sbjct: 627 ----DGAA--ACLLKPLTATRLLPALTEYCRLSQHALPLIND----EQKLP-MS------ 669
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
++ VDDN NLK+ L+ V G +A E QFD MDIQMP MD
Sbjct: 670 ---VMAVDDNPANLKLIGVLLEDQVQHVELCTSGTQAVE-QAKQMQFDLILMDIQMPGMD 725
Query: 946 G 946
G
Sbjct: 726 G 726
>gi|254443730|ref|ZP_05057206.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
gi|198258038|gb|EDY82346.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Verrucomicrobiae bacterium DG1235]
Length = 572
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 141/442 (31%), Positives = 231/442 (52%), Gaps = 61/442 (13%)
Query: 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
++ K +AE A++AKS+FLA +SHE+RTPMNGV+G +L++T++D Q D+V T + S
Sbjct: 184 AFLKAKDEAEQANMAKSEFLAMMSHELRTPMNGVIGFASLLLETQMDDEQTDFVETIRNS 243
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
G +L+S+IN++LD +K+E+G+ ELE VSFNL+ L +V+S+ + + +K ++L + SD
Sbjct: 244 GDSLLSIINDILDFSKIEAGREELELVSFNLQNTLQEVISITTPIASEKELKLDLEYSDA 303
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+PE +IGDPG+ RQ++ NL+ N+IKFT G + +T
Sbjct: 304 LPEYVIGDPGKLRQVVLNLVSNAIKFTPDGGVTITA------------------------ 339
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLI-VSVEDTGQGIPLEAQSRIFTPF 660
+P +S++D +++ ++V DTG GI E Q R+F PF
Sbjct: 340 -----------------------TP--NSNSDTHSMVRIAVSDTGIGISKEVQKRLFHPF 374
Query: 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 720
Q S R HGGTG+GL ISK L M G+I S P GSTF FTA ++
Sbjct: 375 TQADSSTRRKHGGTGLGLVISKRLSEMMGGDITIDSSPGEGSTFNFTAYL-----EASVQ 429
Query: 721 NSQQMNNQP--NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+Q + P + + K LV + K+ ++++G+ + ++ ++ L+
Sbjct: 430 QEEQFFDHPLLTENTDGHRKQKILVAEDNVGNQKLILGMLKKIGLHADTANNGIEALNLF 489
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
G ++IL++ ++ E D +T + L K + L A S+ +R
Sbjct: 490 QKGG--YDLILMDCQMPEMDGFETTAEIRKLEKKTGTHTPIIALTALSLQGARERCLE-- 545
Query: 839 VSIPSVIMKPLRSSMLAASLQR 860
V + + KPL LAA+L +
Sbjct: 546 VGMDDYLSKPLEIKPLAATLSK 567
Score = 43.9 bits (102), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+KIL+ +DN N K+ LK+ G G +A L +D MD QMPEMDG
Sbjct: 450 QKILVAEDNVGNQKLILGMLKKIGLHADTANNGIEALNLFQKGG-YDLILMDCQMPEMDG 508
Query: 947 YE 948
+E
Sbjct: 509 FE 510
>gi|296104455|ref|YP_003614601.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058914|gb|ADF63652.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 919
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 169/541 (31%), Positives = 256/541 (47%), Gaps = 118/541 (21%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + +EL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRAISNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F V +G T
Sbjct: 475 ISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWFHINLDLNPNVLTDGPVTDCL 534
Query: 720 HNSQQMNNQPNSVSSEFQGMKALVVDPRPI-------RAKVSRYHIQRLGIQVEVVSDQL 772
+ +PN+ +++ + L P + V Y I +GI V +
Sbjct: 535 KGKRLAYVEPNAAAAQCT-LDILSTTPLEVVYSPTFSALTVEHYDILLMGIPVTFTGE-- 591
Query: 773 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 832
+ ++QE K S++ L L C Q L N
Sbjct: 592 ---------------LTMQQERLAKAASMTDYL---LLALPCHAQINAEELKN------- 626
Query: 833 NTSTDGVSIPSVIMKPLRSSMLAASL-------QRAMGVGNKGNIRNWELPSMSLRHLLL 885
DG + + ++KPL ++ L +L + A+ + N LP MS
Sbjct: 627 ----DGAA--ACLLKPLTATRLLPALTAYCRLNEHAVALIND----EQRLP-MS------ 669
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
++ VDDN NLK+ L+ V G +A E L QFD MDIQMP MD
Sbjct: 670 ---VMAVDDNPANLKLIGVLLEDQVQHVELCTSGAEAVE-LAKQMQFDLILMDIQMPGMD 725
Query: 946 G 946
G
Sbjct: 726 G 726
>gi|345300630|ref|YP_004829988.1| multi-sensor hybrid histidine kinase [Enterobacter asburiae LF7a]
gi|345094567|gb|AEN66203.1| multi-sensor hybrid histidine kinase [Enterobacter asburiae LF7a]
Length = 919
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 172/550 (31%), Positives = 256/550 (46%), Gaps = 136/550 (24%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + +EL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I V V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDVLVEKRALSNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F S + N +
Sbjct: 475 ISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWF--------HISLDLNPNVLT 526
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAK-----------------------VSRYHIQRLGI 763
+ P V+ +GM+ V+P A+ V Y I +GI
Sbjct: 527 DGP--VTDCLKGMRLAYVEPNAAAAQSTLDVLSSTPLEIIYSPTFSALAVEHYDILLMGI 584
Query: 764 QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 823
V + + ++QE K S++ L L C Q L
Sbjct: 585 PVTFTGE-----------------LTMQQERLAKAASMTDYL---LLALPCHAQINAEEL 624
Query: 824 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL-------QRAMGVGNKGNIRNWELP 876
N DG + + ++KPL ++ L +L Q A+ + N +LP
Sbjct: 625 KN-----------DGAA--ACLLKPLTATRLLPALTEYCRLSQHALPLVND----EQKLP 667
Query: 877 SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACF 936
MS ++ VDDN NLK+ L V G +A E QFD
Sbjct: 668 -MS---------VMAVDDNPANLKLIGVLLGDQVQHVELCTSGAQAVE-QAKQMQFDLIL 716
Query: 937 MDIQMPEMDG 946
MDIQMP MDG
Sbjct: 717 MDIQMPGMDG 726
>gi|13473249|ref|NP_104816.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
gi|14023997|dbj|BAB50602.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
Length = 786
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 174/563 (30%), Positives = 255/563 (45%), Gaps = 118/563 (20%)
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
KAEAAD AKS+FLA +SHEIRTPMNGVLGM ++L TEL Q+ + SG AL+++
Sbjct: 231 KAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTELTPRQKTFTDVIVKSGNALLTI 290
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
IN++LD +K+ +G+L L+ F L ++DV +L S + +K +EL V + R+P ++G
Sbjct: 291 INDILDFSKINAGQLTLDPAPFRLTEAVEDVATLVSARVAEKNLELIVRVDPRLPAHVVG 350
Query: 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
D GRFRQI+TNL+GN++KFTEKGH+ + V
Sbjct: 351 DAGRFRQIVTNLVGNAVKFTEKGHVLIDV------------------------------- 379
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
G +T N D++ L + VEDTG GIP E +F F QV S +
Sbjct: 380 -----GGETVN-------------DVVQLRLRVEDTGIGIPAEKLQNVFEKFAQVDGSST 421
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 728
R H GTG+GL+I+ LV M G+IG S GS F F + + E
Sbjct: 422 RRHEGTGLGLAIAARLVDLMAGKIGVESEIGRGSVFWFAVPLPVHHAEAREA-------- 473
Query: 729 PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS--QIASGSKIIN 786
V + G + LV+D P+ E++ +QL+ S A+ S +
Sbjct: 474 --IVPVDVTGARVLVIDDNPVNR--------------EILLEQLRSWSFDCAAAESGAVG 517
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN---TSTDGVSIPS 843
+ +++ + SV + ++ G + A+S S+ TS D V
Sbjct: 518 LAFLDR-ACQLGASVDCIILDYQMPGMNGADVARAIAADSRLSAIPIVILTSVDQVDFGK 576
Query: 844 VIM---------KPLRSSMLAAS----LQRAMGVGNKGN--------------------- 869
+I+ KP RS++L + +Q+A G K
Sbjct: 577 MIIDFGISAHLTKPARSAVLLGTVISVIQKARSQGGKAQFIREPVQPKPVPQAAPPAFTV 636
Query: 870 IRNWELPSMSLRHLLLGRK----ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATEL 925
IR +P M++ ILI +DN VN V L G + G+ A E+
Sbjct: 637 IRGPAVPVMAVPESTAMPNGPIDILIAEDNEVNQLVFGQILNGLGLSYRIAGNGRTAVEM 696
Query: 926 LMPPHQFDACFMDIQMPEMDGYE 948
H MD+ MPEM+GYE
Sbjct: 697 YRSLHP-KLILMDVSMPEMNGYE 718
>gi|328873441|gb|EGG21808.1| histidine kinase [Dictyostelium fasciculatum]
Length = 1361
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 160/527 (30%), Positives = 249/527 (47%), Gaps = 70/527 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AEAA AKS F+A +SHEIRTPMNG++GM D+ +DT+L Q++Y+ Q+S +L+
Sbjct: 728 KEAAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTDLTAEQREYLTMVQSSAGSLL 787
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+G+LEL+ F+LR L D L + ++ KG+EL I+ V + L
Sbjct: 788 TIINDILDFSKIEAGRLELDQTEFSLRNHLYDTLKTMAWRAHQKGLELVCDIAPDVADIL 847
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDPGR RQI+TNL+GN+IKFT +G + + V + E
Sbjct: 848 VGDPGRLRQIVTNLVGNAIKFTAEGEVILAVDIDER------------------------ 883
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
S ++I + +V DTG GIP E IF F Q S
Sbjct: 884 -----------------------RSNNVIVIHFTVTDTGIGIPAEKLHLIFEAFSQADGS 920
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG-NGSSTSNEHNSQQM 725
I+R +GGTG+GL+IS +V M G++ S P +GS F FTAVF + ++ EH
Sbjct: 921 ITRKYGGTGLGLTISTRMVELMGGKLRAESTPGLGSKFEFTAVFPISDANKEIEH----- 975
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS--- 782
+ + L++D KV + GI + + + S
Sbjct: 976 --------IKLKDRNTLIIDDNKTTRKVLLQMLGEYGISADSADSAETAFRLLRAASLRK 1027
Query: 783 KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIP 842
I ++ ++ +D + + +G + +F++ S R + I
Sbjct: 1028 HPYECIFMDAQLNGRDGFLVAEAIKQDTTIG---DASIFMMICG-SGQRGDPENRSSVIS 1083
Query: 843 SVIMKPLRS-SMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ KP+ ML A R + N S + + +IL+ +DN VN ++
Sbjct: 1084 GYLTKPISPLEMLEALQGRGGHTSDSANGDGSRAQSTTAPAETMAAEILLAEDNIVNQRL 1143
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
A L+R+G V E G +A FD MD+QMP M G+E
Sbjct: 1144 AVRLLERFGHRVTLAENGLQAV-AASETKDFDLILMDVQMPHMSGFE 1189
>gi|90022133|ref|YP_527960.1| ribosomal-protein-alanine acetyltransferase [Saccharophagus
degradans 2-40]
gi|89951733|gb|ABD81748.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
2-40]
Length = 1109
Score = 213 bits (542), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 169/543 (31%), Positives = 267/543 (49%), Gaps = 83/543 (15%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
++ K +AE++ AKS+FLA +SHEIRTPMNGVLGML +++++ L Q+ + AQ+SG
Sbjct: 405 LLAAKNEAESSSRAKSEFLACMSHEIRTPMNGVLGMLGLVLNSSLTPEQERKLLLAQSSG 464
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
++L+S+IN++LD +KVE+GKLELE + F+ +L DV+ F+ +Q+KG+EL +
Sbjct: 465 QSLLSVINDILDYSKVEAGKLELEHLDFDPHRLLSDVVQSFNYSAQEKGIELVLDDIGLG 524
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
+ L GDP R RQII NL+ N++KFT +G I V L E+ + N L
Sbjct: 525 GKVLRGDPSRLRQIINNLLSNALKFTSQGEIIVRAKLDSEI-----------NGLNQL-- 571
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
RC SV DTG GIP + S +F F Q
Sbjct: 572 -----RC------------------------------SVTDTGIGIPSDKISGLFDSFTQ 596
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +R +GGTG+GLSI K L M G+I VS G+ F F GS
Sbjct: 597 VDSSTTRRYGGTGLGLSICKMLTRIMGGDIFVVSEVGKGTRFDFVVHVETGSCLP----- 651
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS-G 781
++ S+ G+ L+VD V + GI V V+ Q L +A
Sbjct: 652 ------VDNAESDVTGLNVLLVDDNLTNLDVISGQLISWGIHVTKVAGPEQALVLVAEVQ 705
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS-SSRANTSTDGVS 840
+ +++L++ + + ++ C + + +L++S +SR + GV
Sbjct: 706 DTVFDLVLMDCHMPNIN---GIDLAERIQGSPCIKPNSVIILSSSADMASRFHMQEVGVV 762
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM-----------SLRHLLLGR-- 887
+MKP+ + L ++Q + + K N + + P++ + +++ G
Sbjct: 763 --GCLMKPVSAPYLHQAIQYFIQI-KKSNKQQFITPALLESVHATTESTANPNIVWGDNV 819
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH---QFDACFMDIQMPEM 944
+IL+V+DN VN +V A L+ +G A V+ G++A L ++ FMD QMP +
Sbjct: 820 RILVVEDNLVNQQVIAGILEDFGLAFTLVDDGQQAISALKENTGDLRYHFVFMDCQMPVL 879
Query: 945 DGY 947
DGY
Sbjct: 880 DGY 882
>gi|350552273|ref|ZP_08921477.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349794650|gb|EGZ48461.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 1258
Score = 213 bits (542), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 154/533 (28%), Positives = 256/533 (48%), Gaps = 76/533 (14%)
Query: 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSL 488
+AEAA+ K++FLA +SHE+RTPMNGV+GM +L++TEL Q++Y + SG+ ++S+
Sbjct: 723 QAEAANATKTEFLANISHELRTPMNGVIGMNGLLLETELTEEQREYAAIVRNSGELMMSM 782
Query: 489 INEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIG 548
IN++LD +K+E+GKL+LE ++F+L +L D++ + + ++ DKG+EL + +P + G
Sbjct: 783 INDILDVSKIEAGKLDLEILAFDLEGMLGDLVDIMALRAYDKGLELFYTLEPGLPRHMRG 842
Query: 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
DPGR RQI++NL+ N+IKFT KG I + V V++
Sbjct: 843 DPGRLRQILSNLICNAIKFTPKGEIAIRVACVQQ-------------------------- 876
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
+D+ L +V DTG GIP + ++F F QV S +
Sbjct: 877 ----------------------QSDMAVLRFAVRDTGIGIPPDKLGQLFEKFTQVDSSTT 914
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ 728
R +GG G+GL+I+K L M GEIG VS GS F FT E + +
Sbjct: 915 RRYGGMGLGLAIAKQLTEMMHGEIGVVSEAGQGSEFWFTVRL--------EKQPEDLQKS 966
Query: 729 PNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQ---LQCLSQIASGSKII 785
P +E +G + LV+D + +Q G+++ V DQ + L + A+
Sbjct: 967 PRE-RAELKGARVLVLDASQGHGDMLGQQLQSWGMRITHVIDQQGAFERLREAAADDPFH 1025
Query: 786 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 845
M++ Q ++ ++S+ R Q+ +L + + + + +
Sbjct: 1026 IMLVNTQMSRDEGEAISSALRQEPR-----LQATRLILLTPLGIRGDARYYETLGFAAYL 1080
Query: 846 MKPLRSSMLAASLQRAMGVGNKGNIRN-WELPSMSLRHLL---------LGRKILIVDDN 895
KP++ L +L + + + + RH + +IL+V+DN
Sbjct: 1081 TKPVKPHELQGALSLVLAKPTTADASSTLNAAQIITRHTVREAIKRFADCKARILLVEDN 1140
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+N ++ LK+ G V G +A L H +D MD++MP MDG E
Sbjct: 1141 LINQRMMMQMLKKLGLRADAVAHGAEALNALEMTH-YDLVIMDVKMPIMDGLE 1192
>gi|406836798|ref|ZP_11096392.1| PAS domain S-box [Schlesneria paludicola DSM 18645]
Length = 800
Score = 213 bits (542), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 154/539 (28%), Positives = 259/539 (48%), Gaps = 70/539 (12%)
Query: 413 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 472
I + +E + + K+ AE+A+ AKS FLA +SHEIRTPMN V+GM D+++DTEL+ Q
Sbjct: 267 ITERKEMEEALRKAKEAAESANRAKSAFLANMSHEIRTPMNAVIGMTDLVLDTELNDLQD 326
Query: 473 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 532
Y++ + S ++L+ LIN++LD +K+E+ KLEL+ F+LR +L D + + + Q +
Sbjct: 327 SYLKIVKDSAESLLRLINDILDFSKIEADKLELDQTPFSLRDLLGDAIKTLALQVQGDEL 386
Query: 533 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592
ELA +++ VPE L GDP R RQ++TNL+ N++KFTE+G I + V ++ + +
Sbjct: 387 ELACHVTPDVPEYLTGDPYRLRQVVTNLIANAVKFTERGEIVLQVSRESQIAGDVRLHF- 445
Query: 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 652
S ++T G P AD+ H
Sbjct: 446 --SVRDTGIGIP-ADKQH------------------------------------------ 460
Query: 653 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712
+F F QV S +R +GGTG+GL+I+ LV M GE+ S GSTF FTA F
Sbjct: 461 --LLFNAFSQVDSSTTRRYGGTGLGLAITARLVRLMDGEVWVESESGRGSTFHFTARFAL 518
Query: 713 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVS 769
+ + + ++ L+VD + + + ++ V+
Sbjct: 519 ATVPKPAFEPL----------ASLKDLRVLIVDDNATNRLILQEILNSWAMRPTAVDSAP 568
Query: 770 DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 829
LQ LS+ ++ +++L + + + D + R+ F S + ++ +S +S
Sbjct: 569 AALQELSRSIQANEPYDLVLSDVHMPDVDGFELASTIRQDRR----FHSTVIMMLSSGAS 624
Query: 830 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKI 889
S + + +MKP++ S L ++ +G K + S + +I
Sbjct: 625 SGDAARCRELGAAAHLMKPIKQSDLHLTIATTLGNAAKRAAQQ----STKIDSTCPPLRI 680
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L+ +D N +A LK++G V G++A E FD MD+QMPE+DG++
Sbjct: 681 LLAEDGYANQTLAVGVLKKWGHTVTIANNGQEAIE-AWEREPFDVILMDVQMPEIDGFQ 738
>gi|160873991|ref|YP_001553307.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
gi|378707231|ref|YP_005272125.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
gi|418024379|ref|ZP_12663362.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS625]
gi|160859513|gb|ABX48047.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
gi|315266220|gb|ADT93073.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
gi|353536339|gb|EHC05898.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS625]
Length = 1786
Score = 213 bits (542), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 164/533 (30%), Positives = 262/533 (49%), Gaps = 77/533 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++A+AA AK FLA +SHEIRTPMN ++GM + + TELD Q++YV + + ++L+
Sbjct: 1033 KEQADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTELDKKQKNYVEKIERASQSLL 1092
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+GKL++++V F L +L+D+ +FS K+ K +EL ++ VP L
Sbjct: 1093 SIINDILDFSKIEAGKLDIDSVPFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYL 1152
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R Q++ NLM N+IKFTE+G + +++ LVE+ D + + + S L+ A
Sbjct: 1153 LGDSLRLGQVLINLMNNAIKFTERGEVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQA 1212
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
K FK+F Q DT S
Sbjct: 1213 ------KLFKSFTQ---------------------ADT---------------------S 1224
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I K LV M G+IG S GSTF FT H S +
Sbjct: 1225 TTRKYGGTGLGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKL---------HIS---D 1272
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ----CLSQIASGS 782
Q + E +GM LVVD + ++ +G +V+ V + CL Q +
Sbjct: 1273 GQKLVLEQELEGMSVLVVDDNATARDIMCTTLESMGFRVDTVRSGEEAISRCLLQAYEVA 1332
Query: 783 ----KIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDG 838
K+ NM +E + + + + L+ ++ + T +
Sbjct: 1333 LIDWKMPNMDGLET---ARQIQLQAQSQSQSQSQPQSHPQPKILMVSAHADHEFLTQIEQ 1389
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNI---RNWELPSMSLRHLLLGRKILIVDDN 895
+++ I KP+ +S L + A +G +G + R E + L L G++IL+V+DN
Sbjct: 1390 LALAGYISKPISASRLLDGIMNA--IGREGILPVRRRTEELAPQLLLPLQGKRILLVEDN 1447
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+NL+VA+ L++ G + G+ A + L H FD MD QMP MDGY+
Sbjct: 1448 EMNLEVASEFLEQVGIILSIATNGQIALDKLSQQH-FDLVLMDCQMPVMDGYQ 1499
>gi|15598658|ref|NP_252152.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
gi|418588737|ref|ZP_13152735.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P1]
gi|421518003|ref|ZP_15964677.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO579]
gi|9949605|gb|AAG06850.1|AE004767_1 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
PAO1]
gi|375040396|gb|EHS33172.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P1]
gi|404347485|gb|EJZ73834.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO579]
Length = 919
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 167/551 (30%), Positives = 257/551 (46%), Gaps = 91/551 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + ++A + AKS+FLA +SHEIRTP+NGVLGML +L DT LD
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q YV T +SG AL+S+IN++LD A++ESGKL LE + F+L +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L + + VP L GDP R RQ++ NL+ N++KFT +GH+ V V
Sbjct: 501 KRLHLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ F++ G L+ SV D+G GI
Sbjct: 550 --------------------------RRFDEGGRE-----------RLLYSVSDSGIGIS 572
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+AQ +F F Q S +R +GG+G+GL+IS+ LV M G I S P G+ F+
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632
Query: 710 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +Q + ++P ++SE L +D + ++R G++VE
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679
Query: 769 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 822
+CL + + + +LV W S+ TL+ Q + L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728
Query: 823 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L + +G+ + + V +K LR ++L +R G E P
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERPPD 788
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFM 937
+ IL+ +DN VN V L + G AV G+ A E L P+ M
Sbjct: 789 A-------PCILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 841
Query: 938 DIQMPEMDGYE 948
D +MPEMDG+E
Sbjct: 842 DGEMPEMDGFE 852
>gi|401675106|ref|ZP_10807100.1| BarA Protein [Enterobacter sp. SST3]
gi|400217563|gb|EJO48455.1| BarA Protein [Enterobacter sp. SST3]
Length = 919
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 167/541 (30%), Positives = 256/541 (47%), Gaps = 118/541 (21%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + +EL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRSISSNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F V +G T
Sbjct: 475 ISRRHGGTGLGLVITQRLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVLTDGPVTDCL 534
Query: 720 HNSQQMNNQPNSVSSEFQGMKALVVDPRPI-------RAKVSRYHIQRLGIQVEVVSDQL 772
+ +PN+ +++ + L P + V Y I +GI V +
Sbjct: 535 KGKRLAYVEPNAAAAQCT-LDILSTTPLEVVYSPTFSALAVEHYDILLMGIPVTFTGELT 593
Query: 773 QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 832
++A + + + +L+ L C Q L N
Sbjct: 594 MQQERLAKAALMTDYLLL--------------------ALPCHGQLNAEELKN------- 626
Query: 833 NTSTDGVSIPSVIMKPLRSSMLAASL-------QRAMGVGNKGNIRNWELPSMSLRHLLL 885
DG + + ++KPL ++ L +L Q A+ + N +LP MS
Sbjct: 627 ----DGAA--ACLLKPLTATRLLPALTEYCRLSQHALPLIND----EQKLP-MS------ 669
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
++ VDDN NLK+ A L+ V G +A E QFD MDIQMP MD
Sbjct: 670 ---VMAVDDNPANLKLIGALLEDQVQHVELCTSGAQAVE-QAKQMQFDLILMDIQMPGMD 725
Query: 946 G 946
G
Sbjct: 726 G 726
>gi|294141952|ref|YP_003557930.1| sensor histidine kinase/response regulator [Shewanella violacea
DSS12]
gi|293328421|dbj|BAJ03152.1| sensor histidine kinase/response regulator [Shewanella violacea
DSS12]
Length = 931
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 163/529 (30%), Positives = 246/529 (46%), Gaps = 87/529 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A A KS+FLA +SHE+RTP+NGV+G L+ T L +QQDYV T + S L+
Sbjct: 286 KKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHSSQQDYVNTIEKSATNLL 345
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN++LD +K+E+GK+ LE + F LR LDD ++L S +++K +EL V I +PE L
Sbjct: 346 GIINDILDFSKLEAGKMVLENMPFALRETLDDTITLLSNSAREKDIELVVDIDQSIPEDL 405
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD RF QIITNL+GN+IKFT+ G + + + L E D +
Sbjct: 406 SGDAMRFSQIITNLVGNAIKFTDIGSVHLRLQLTESTNDKV------------------- 446
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
NL V DTG GI Q +F F Q S
Sbjct: 447 -----------------------------NLRCEVIDTGIGIDESQQELLFQAFGQADSS 477
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-----TAVFGNGSSTSNEHN 721
ISR GGTG+GL I+K L+ RM G+IG S PN GS+F F T+++ G
Sbjct: 478 ISRRFGGTGLGLIITKRLINRMGGQIGCHSKPNTGSSFWFTLPLSTSIYPIG-------- 529
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
Q SV + L+++PR + ++ G+++ + +
Sbjct: 530 ------QIQSV-DKLLNKTILLLEPRELSNNTLDRQVRHWGMRLTNIRSSELLAHHFSQH 582
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL---LANSISSSRANTSTDG 838
+ L+ + +KDT++ + L+K+ +F+ L + + S
Sbjct: 583 DTHYDYALISNKGLDKDTNIGS----QLKKIKARCNYLIFIGGDLEHDLHSILP------ 632
Query: 839 VSIPSVIMKPLRSSMLAASL-QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
+ V+ P+ +LA +L ++ ++ + P R + +L VDDN
Sbjct: 633 -FVDKVMSAPIGEKVLAQTLIDPQPNSESQQLLKEYTPPEPISREAM---SVLAVDDNPA 688
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ LK + V V+ G+ A + FD FMDIQMP DG
Sbjct: 689 NLKLIDTLLKEVVSQVTVVDSGQGAIK-QAQERSFDLIFMDIQMPGTDG 736
>gi|145300355|ref|YP_001143196.1| hybrid sensory histidine kinase BarA [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853127|gb|ABO91448.1| two-component system hybrid sensor histidine kinase/response
regulator [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 903
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 162/530 (30%), Positives = 254/530 (47%), Gaps = 97/530 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G L+ T L +Q DY++T + S + L+
Sbjct: 281 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQLLKTALTPSQTDYMQTIEKSARNLL 340
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN++LD +K+E+GKL+LE + F+LR L++ + L + DK +EL++ + VP+ L
Sbjct: 341 GIINDILDFSKLEAGKLQLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLQVDAEVPDYL 400
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R +Q++TNL GN+IKFTE+G++ V +
Sbjct: 401 TGDPMRLQQVLTNLAGNAIKFTERGNVDVHI----------------------------- 431
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
Q G S+ + + L V + DTG GI E Q ++F F Q S
Sbjct: 432 ------------EQTGG------SNGNKVRLNVLIRDTGIGISEEQQRQLFQAFNQADSS 473
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR +GGTG+GL I++ LV +M G+I F S GS F+F S M+
Sbjct: 474 ISRRYGGTGLGLVITQKLVQQMGGQIRFESELGKGSIFSF---------------SLDMD 518
Query: 727 NQPNSVSSEF-----QGMKALVVDPRPIR-----AKVSRYHIQRLGIQVEVVSDQLQCLS 776
P + + QG + +++P P A ++ + + + ++ + ++
Sbjct: 519 VSPLPQTEKLPLDRIQGKRVWLLEPDPFSHSSLCALLAEWQLDVQSLAIDTIWPEMSNQD 578
Query: 777 QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTST 836
+ GS ++ Q+V + ++ G Q+ + LL++ S
Sbjct: 579 MVIIGSSTLH---TPQQVIARLDALD------------GQQNTIVLLSSHEPSLYEAMLA 623
Query: 837 DGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 896
G + KP L +L ++ LP+ S R + K+L VDDN
Sbjct: 624 HGAQ--HCLSKPTNHRKLLHALLSPEAT------KSAPLPTPSPRSVQ-AIKVLAVDDNA 674
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ AA LK + VV + GK+A L FD FMDIQMP MDG
Sbjct: 675 ANLKLIAAMLKEMVSQVVVCKNGKEAVRLAQ-SQPFDIIFMDIQMPIMDG 723
>gi|158333448|ref|YP_001514620.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
gi|158303689|gb|ABW25306.1| two-component hybrid sensor and regulator histidine kinase
[Acaryochloris marina MBIC11017]
Length = 755
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 160/514 (31%), Positives = 248/514 (48%), Gaps = 69/514 (13%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
K FLA +SHEIRTPMNGV+GM +L+DTEL QQ+Y T + SG +L++LIN++LD +
Sbjct: 236 KDDFLAMMSHEIRTPMNGVIGMTGLLLDTELTPQQQEYTETIRKSGDSLLTLINDILDYS 295
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+GKL+LE +FN+R ++D L L + + K +ELA + VP+ ++GD R RQI
Sbjct: 296 KIEAGKLDLEKQAFNVRVCVEDALELVASRVGPKEIELAGVVEPDVPQAILGDVTRLRQI 355
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+ NL+GN+IKFT+ G + V V
Sbjct: 356 LVNLLGNAIKFTQSGEVVVNV--------------------------------------- 376
Query: 617 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
S PF + + L L +V DTG GIP E Q+R+F F QV S +R GGTG+
Sbjct: 377 ------SAEPFAADTP-LYELSFAVRDTGMGIPAERQNRLFKSFSQVDSSTTRKFGGTGL 429
Query: 677 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEF 736
GL I K L M G I S GSTF FT + E + + P +
Sbjct: 430 GLVICKRLSELMGGRIWVESEEGQGSTFAFTI-----QAEETEDTTVLAQSLP---AVTL 481
Query: 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE 796
+ + L+VD +V + ++ +V + + L + ++ +++ ++ E
Sbjct: 482 KDKRVLLVDDNDTNQRVLTLQTESWKMKPQVAASGYEALGLLEHAGP-FDIAILDMQMPE 540
Query: 797 KDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAA 856
D +R G + +L SI + G+ + + KP++ S L +
Sbjct: 541 MD---GLTLAQKIRSHPRGVNFPMVML-TSIGQAPDLAHHKGL-FSAWLNKPIKQSQLYS 595
Query: 857 SLQRAMGVGNKGNIR---NWELPS-MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAA 912
+L +++ GN+ + +L + M+ +H L KIL+ +DN VN K+A L + G
Sbjct: 596 ALVKSL-TGNEVKTQKSTTLQLDTEMADQHPL---KILLAEDNPVNQKLAVLILAKMGYR 651
Query: 913 VVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
V G + + L +D MD+ MPEMDG
Sbjct: 652 PDVVGNGLEVLQAL-KRQSYDVILMDVNMPEMDG 684
>gi|262041527|ref|ZP_06014724.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|259041088|gb|EEW42162.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
Length = 916
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 166/529 (31%), Positives = 256/529 (48%), Gaps = 95/529 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QI+TNL+GN+IKFTE G+I V V + + + V+ E+ +T G P
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ G + V+ A+ + + ++V + S L++
Sbjct: 522 --PNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 840
+++LV V +D S L K C + L L S DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLAK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629
Query: 841 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
+ ++KPL ++ L +L A+ I + +LP ++ VDDN
Sbjct: 630 --ACLLKPLTTTRLLPALVATSHALASAPLMQIDSHKLP----------MTVMAVDDNPA 677
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L V+ + G++A + Q D MDIQMP+MDG
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-KAKQLQVDLILMDIQMPDMDG 725
>gi|345870773|ref|ZP_08822723.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
gi|343921242|gb|EGV31963.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
Length = 1050
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 156/541 (28%), Positives = 263/541 (48%), Gaps = 64/541 (11%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+VEE ++E K +AEAA AKS+FL+++SHE+RTPMN ++G+ ++L DTEL Q +
Sbjct: 386 QVEE---ALIEAKHRAEAATEAKSRFLSSMSHELRTPMNAIIGVGEVLADTELGRDQVHF 442
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
+R Q++G L+++IN++LD +K+ESG+L LE++ F+L +++++ + + +++ KG++L
Sbjct: 443 IRILQSAGDDLLNVINDILDISKIESGELTLESIDFDLSQLVEEICDMLAIRARTKGLDL 502
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
A+ + +P+ ++GDP R RQI+ NL+GN++KFTE+G++ V V L ET +
Sbjct: 503 ALRLGRYLPKRIVGDPHRLRQILINLIGNAVKFTEQGYVSVEVSL---------EETSVP 553
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
S+ G VA L+ S+ DTG GIP + Q
Sbjct: 554 SAAEKPPGSQVA------------------------------LVFSIRDTGIGIPEDKQE 583
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
+IF F QV S +R +GGTG+GL IS+ L M G I S P +GS F G
Sbjct: 584 QIFESFTQVDSSTTRQYGGTGLGLGISRRLATLMGGTIEVHSTPGLGSLFAVHLTVQTGK 643
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI---QVEVVSDQ 771
+ ++ + P + L+VD + + + G+ + E
Sbjct: 644 DETVSAPPAEIPDPPEK--------RILIVDDIEVNRLILGEMLLEWGMDFAEAESAEQA 695
Query: 772 LQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
L L+ + + +++L+ + W + L + N+ F ++ S +
Sbjct: 696 LTLLNAARNAGRPFDILLL--DYWMP--GMDGLDLANVITQDLDFADLDIVMLASDTLIM 751
Query: 832 ANTSTDGVSIPSVIMKPLR----SSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
T + + ++KP++ +L Q A G G + L
Sbjct: 752 DKARTQRIRLAGHLVKPVKKRDLKRLLVGFTQIATGPGTSSGEQGATTEDDG--RSLPAA 809
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
+IL+V+D+ N + A L R V E G +A E + + MD+QMP MDGY
Sbjct: 810 RILVVEDSPHNRTLIQAFLARTPLRVDYAENGAEAIE-KWNANAYTLVLMDMQMPVMDGY 868
Query: 948 E 948
E
Sbjct: 869 E 869
>gi|13473203|ref|NP_104770.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
gi|14023951|dbj|BAB50556.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
Length = 1391
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 166/562 (29%), Positives = 258/562 (45%), Gaps = 102/562 (18%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ E +++A AD AKS+FLA +SHEIRTPMNGVLGM ++L + LD Q+ + SG
Sbjct: 826 LSEARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDPKQKTFTDIIVKSG 885
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
AL+++IN++LD +K+++G++ L+ FNL ++DV +L S ++++K +EL V + R+
Sbjct: 886 NALLTIINDILDFSKIDAGQMVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRVEPRL 945
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
+GD GR RQI+TNL+GN++KFT++GH+ V V T
Sbjct: 946 ESLFVGDVGRIRQIVTNLLGNAVKFTDEGHVLVDV---------------------TGER 984
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
P R L +SV DTG GIP E +F F Q
Sbjct: 985 VPTGTR----------------------------LTISVTDTGIGIPEEKLKLVFEKFSQ 1016
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +R H GTG+GL+I+ LV M G IG S GSTF FT + + N
Sbjct: 1017 VDTSSTRRHEGTGLGLAITSRLVELMGGTIGVESAEGKGSTFWFTVTL----PRAGQQNG 1072
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSDQLQCLSQIA 779
Q++ P V+ G + L+VD + + + E ++ L+ L A
Sbjct: 1073 QRI--MPVDVT----GARVLIVDDNAVNRAILTEQMTSWTFDSCAAESGAEGLKVLIAAA 1126
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
+ ++ ++++ ++ E + V N G ++ S+ S ANTS +
Sbjct: 1127 AYGVPVDCVVLDYQMPEMSGAEMARIVRNT----GGLADTPIIMLTSVDQSLANTSYRDL 1182
Query: 840 SIPSVIMKPLRSSM----LAASLQRAMGVGNKGNIR----------------------NW 873
I + ++KP RSS+ L A++QR + ++
Sbjct: 1183 GIDAQLIKPARSSVLLETLVATIQRHRHATDSHAVQPLAAERPDVPQPPPLALSEQRAQL 1242
Query: 874 ELPSMSLRHLLLGR-----KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 928
+ P + R G IL+ +DN VN V L G V G+KA +
Sbjct: 1243 QPPPVRPRLPATGGDGHRLDILVAEDNEVNQMVFTQILGETGYGFEIVGNGRKALDAF-- 1300
Query: 929 PHQFDAC--FMDIQMPEMDGYE 948
+ + C MD+ MPEM G E
Sbjct: 1301 -GKLNPCMILMDVSMPEMSGLE 1321
>gi|449467325|ref|XP_004151374.1| PREDICTED: signal transduction histidine-protein kinase BarA-like
[Cucumis sativus]
Length = 625
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 168/537 (31%), Positives = 260/537 (48%), Gaps = 102/537 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + +EL+ TQ+D++ T + S L+
Sbjct: 41 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 100
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LDDV++L + S DKG+EL + I + VP+ +
Sbjct: 101 TIINDVLDFSKLEAGKLILESIPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNV 160
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V + +++E ++ ++T G P
Sbjct: 161 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNNKVQIEVQI---RDTGIGIPER 217
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 218 DQSRLFQAFR---------------------------------------------QADAS 232
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 233 ISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWF-------------HINLDLN 279
Query: 727 NQPN-----SVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN V+ +GM+ V+P A+ + + ++V V S L+
Sbjct: 280 --PNVQTDGPVTDCLKGMRLAYVEPNAAAAQCTLDVLSSTPLEV-VYSPTFSALANDHYD 336
Query: 782 SKIINM-------ILVEQEVWEKDTSVS-----TLFVNNLRKLGCGFQSKLFLLANSISS 829
++ + + ++QE K S++ ++ L L C Q L N
Sbjct: 337 ILLLGIPVTFTGELTMQQERLAKAASMTGSPRASMTDYLLLALPCHAQINAEELKN---- 392
Query: 830 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKI 889
DG + + ++KPL ++ L +L + + LP + H L +
Sbjct: 393 -------DGAA--ACLLKPLTATRLLPALTEYC------RLTHQSLPLENDEH-KLPMTV 436
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+ VDDN NLK+ L+ V G +A E QFD MDIQMP MDG
Sbjct: 437 MAVDDNPANLKLIGVLLEDQVQHVELCTSGAEAVE-QAKQMQFDLILMDIQMPGMDG 492
>gi|168016518|ref|XP_001760796.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
gi|162688156|gb|EDQ74535.1| sensory histidine protein kinase [Physcomitrella patens subsp.
patens]
Length = 1165
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 164/560 (29%), Positives = 267/560 (47%), Gaps = 52/560 (9%)
Query: 412 RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQ 471
R ++E + + AE A AKS+FLA +SHEIRTP++G++GM + ++T+L Q
Sbjct: 551 RTLELERTNRSLQVSQAAAEEASRAKSEFLANMSHEIRTPIHGIIGMASLALETDLTDEQ 610
Query: 472 QDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKG 531
++++ T S L+ ++N +LD AK+E+G++ELE + F++ + + + ++ K
Sbjct: 611 REHLETVSQSADCLLHIVNAILDLAKIEAGRVELERIEFSVFDTVSSTIKMLQVRANQKQ 670
Query: 532 VELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE-----EVVDS 586
++L+ I + VPE L+GD R +Q + NL+GN+IKFT +G + +T + E S
Sbjct: 671 LQLSWEIDENVPEHLVGDAARLQQCLINLVGNAIKFTHEGSVSLTAKVYTGTGPLERTSS 730
Query: 587 IEVETELSSSKNTLSGYP-VADRCHSWKGFKTFNQDGSTSPFKSSSA----DLINLIVSV 641
++ + SS + T + P D H + F DG S +S+ D ++L+ +V
Sbjct: 731 ATLKKKSSSREPTAAEEPQTNDSHHVIDISEIFATDGEISRCSNSATVKKDDRVSLLFAV 790
Query: 642 EDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 701
+DTG GI E Q +F F Q S +R +GGTG+GLSI + LV M G I S P G
Sbjct: 791 QDTGIGISKEKQKEVFKAFSQADSSTTRLYGGTGLGLSIVERLVQMMGGRIWLESEPGKG 850
Query: 702 STFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL 761
STF F A F +S+ M ++ Q ++ + +P ++ H+
Sbjct: 851 STFYFIAQFDLAG------HSESMKSRDEGKLEREQTFQSNRKENQPSQSIFETNHM--- 901
Query: 762 GIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTS------VSTLFVNNLRKLGCG 815
+ Q Q S + + + EV K + F +NLR
Sbjct: 902 -------TSQKQLSQDSHSKNPPSGSVKIPHEVSSKRADGDLFQKLDKPFYSNLRHASLS 954
Query: 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMK------PLRSSMLAASLQRAMGVGNKGN 869
+++ L R N+ GV + S+ M+ P +SS + + N
Sbjct: 955 VPAQMNLEFK--QKGRCNSVAVGV-LQSMAMENETTPPPTKSSSFPKKFEWSPNAQLDPN 1011
Query: 870 IRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP 929
SLR G KIL+ +DN VN KVA LK++G V V G++ + L
Sbjct: 1012 FE------ASLR----GMKILLAEDNIVNQKVACQQLKKFGTEVDVVSDGQQCLDALERD 1061
Query: 930 HQ-FDACFMDIQMPEMDGYE 948
+D MD+QMP +DG +
Sbjct: 1062 RNGYDIILMDVQMPVLDGLQ 1081
>gi|17229771|ref|NP_486319.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17131370|dbj|BAB73978.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 1299
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 171/540 (31%), Positives = 258/540 (47%), Gaps = 81/540 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AE A++AKS FLAT+SHEIRTPMN ++GM +L+DT L Q DYV T + S L+
Sbjct: 616 KQVAEKANMAKSNFLATMSHEIRTPMNAIIGMSGLLLDTTLKPEQFDYVETIRNSSHTLL 675
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+ESGKLELE F+LR +++ L L + ++ KG+EL + P +
Sbjct: 676 TIINDILDFSKIESGKLELEEQPFDLRLCVEEALDLLAPQAASKGIELMYQLEPDTPTLV 735
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R RQI+ NL+ N++KFT+ G I +T+ +++
Sbjct: 736 VGDITRIRQILWNLVSNAVKFTKIGEICITIGAKQKI----------------------- 772
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+K + +V+DTG GI + R+F PF QV S
Sbjct: 773 --------------------YKQTDPTRYEFQFAVQDTGIGIERDRLHRLFKPFSQVDAS 812
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
++R +GGTG+GL+ISK L M G++ S + GS F FTA SS N
Sbjct: 813 MTRRYGGTGLGLAISKRLSEIMGGKMWVESQSHQGSIFYFTATLQVNSSAINS------- 865
Query: 727 NQPNSVSSEFQGMKALV-VDPRPIRAKVSRYHIQRLGIQVEVVSDQ---LQCLSQIASGS 782
V E G + L+ V +R ++R +Q LG+ V+ V L CL Q S
Sbjct: 866 --AAKVDPELVGKRLLLAVGNANLRKCLTR-QLQSLGLDVQAVDSNATALHCLWQHTS-- 920
Query: 783 KIINMILVEQEVWEKDT-SVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
+ V + D+ ++ L ++ + Q+ ++ ++
Sbjct: 921 -------LALAVLDVDSPQINGLHLSTKIRAIPQHQNLPLVMLSAKGKQTLEVKQVASEF 973
Query: 842 PSVIMKPLRSSMLAASLQRAM------GVGNKGNIRNW-ELPSMSL----RHLL--LGRK 888
+ + KPLR L +L + + +G I ++ LP +L HL L K
Sbjct: 974 TAFLHKPLRHYQLHNTLLQIVRGKWLSKSTPQGIIPSYSRLPKPNLPAIDTHLAENLPLK 1033
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
IL+V+D VN K+A L G G +A E L +D FMDIQMPEMDG+E
Sbjct: 1034 ILLVEDVLVNQKIAMNMLHLLGYRTDVANNGLEALEALQ-RQLYDVVFMDIQMPEMDGWE 1092
>gi|346991423|ref|ZP_08859495.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TW15]
Length = 2291
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 165/519 (31%), Positives = 241/519 (46%), Gaps = 74/519 (14%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KS FLAT+SHEIRTPMN V+GM +LMDTELD Q DY T + SG AL+ +INE+LD +
Sbjct: 1778 KSAFLATMSHEIRTPMNAVIGMSGLLMDTELDAEQSDYANTIRDSGDALLGIINEILDFS 1837
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+G++++E F+LR ++ L L SGK+ +K ++LA D +P + D R RQI
Sbjct: 1838 KIEAGQMDIENHPFDLRECIESALDLVSGKAAEKQLDLAYEFDDALPLAISADLTRLRQI 1897
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+ NL+ N++KFTE G + ++V +V S+E
Sbjct: 1898 LLNLLSNAVKFTESGEVVLSVEQSAKVKGSLE---------------------------- 1929
Query: 617 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
L V DTG G+ + SR+F F Q S +R +GGTG+
Sbjct: 1930 --------------------LTFKVRDTGIGLSQKGMSRLFQSFSQADSSTTRKYGGTGL 1969
Query: 677 GLSISKYLVGRMKGEIGFVSI-PNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735
GL+ISK L M G + S GSTF F + + + + QP E
Sbjct: 1970 GLAISKRLAELMGGTMWAESDGEGSGSTFVFK-IQAKPAKPVKSSSRSLVGVQP-----E 2023
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW 795
+G + L+VD K+ ++ G Q + LS + G + IL
Sbjct: 2024 LEGKRILMVDDNATNRKILSLQTEKWGTQTTTYGSPSEALSILEEGVEFDLAIL------ 2077
Query: 796 EKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLA 855
D + + L K + L L+ S R DG+ + + KPLR S L
Sbjct: 2078 --DMHMPDMNGEELAKRVRAKKPGLPLILFSSLGPRDIDLEDGL-FTANLAKPLRQSHLF 2134
Query: 856 ASL------QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRY 909
+L ++ +K + P M+ RH L +IL+ +DN VN K+A L++
Sbjct: 2135 DTLVTLFATEKVRVEPSKPQGKPQTDPDMATRHPL---RILLAEDNLVNQKLALRLLEQM 2191
Query: 910 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G G +A E + +D FMD+QMPEMDG E
Sbjct: 2192 GYRADLASNGVEAVESVN-RQTYDVVFMDVQMPEMDGLE 2229
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
L G++IL+VDDN N K+ + +++G +A +L +FD +D+ MP+
Sbjct: 2024 LEGKRILMVDDNATNRKILSLQTEKWGTQTTTYGSPSEALSILEEGVEFDLAILDMHMPD 2083
Query: 944 MDGYEM 949
M+G E+
Sbjct: 2084 MNGEEL 2089
>gi|416810905|ref|ZP_11889530.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
3256-97]
gi|419121842|ref|ZP_13666789.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5B]
gi|320656477|gb|EFX24373.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|377964999|gb|EHV28431.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5B]
Length = 918
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 251/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRAQSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|218709306|ref|YP_002416927.1| two-component regulatory system multi-sensor hybrid histidine
kinase [Vibrio splendidus LGP32]
gi|218322325|emb|CAV18455.1| putative two-component regulatory system; Multi-sensor hybrid
histidine kinase [Vibrio splendidus LGP32]
Length = 1223
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 163/535 (30%), Positives = 250/535 (46%), Gaps = 94/535 (17%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
AKS FLA +SHEIRTPMN ++GM + + T+L Q++Y+ + S L+ LIN++LD
Sbjct: 479 AKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKAQRNYIHKVKLSSDTLLGLINDILDF 538
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+E+GKL++E V F L +LD++ +L ++ D+G+EL + + VP LIGDP R Q
Sbjct: 539 SKIEAGKLDIEKVDFQLENVLDNITNLVGLRASDRGLELLIQVDRDVPTNLIGDPLRLGQ 598
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
I+ NL N++KFTEKG + +++ + E D I+
Sbjct: 599 ILINLSNNAVKFTEKGEVKISISVAERQGDDIK--------------------------- 631
Query: 616 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
L +V D+G G+ E S++FT F Q S +R +GGTG
Sbjct: 632 ---------------------LNFAVSDSGIGMKQEQASKLFTKFTQADSSTTRKYGGTG 670
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735
+GL+ISK L M G+I + GSTF+FT +T H+ QQ V +
Sbjct: 671 LGLAISKELSQLMGGDIHVSTELGKGSTFSFTI------ATRVSHSIQQ---HRVVVPAS 721
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW 795
+K LVVD A++ +V D L+ L S ++ L+E
Sbjct: 722 INNLKVLVVDDNS-SARL-------------IVGDILESLKLTPILSSSVDEALIELHTA 767
Query: 796 EKDTSVSTLFVNN-----------LRKLGCGFQ---SKLFLLANSISSSRAN-TSTDGVS 840
+ L +++ L +L G Q K+ +L A G
Sbjct: 768 DAQNKPFDLVISDWKMPKRDGVDLLAELKNGQQLTMPKIMMLTAYDREELAELIEQRGFE 827
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP---SMSLRHLLLGRKILIVDDNNV 897
+PS++ KP+ SS L S+ G+ + + EL ++ L G IL+V+DN +
Sbjct: 828 VPSILDKPITSSHLYDSIVSLYGL-DSDRVSRSELEQQNQLANVQQLAGANILLVEDNEI 886
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATEL----LMPPHQFDACFMDIQMPEMDGYE 948
N ++A L+ V E G++A +L + FD MD QMP MDGYE
Sbjct: 887 NQELATELLEGQQIKVTIAENGQQAIDLYQQAITDDVPFDGILMDCQMPVMDGYE 941
>gi|170727693|ref|YP_001761719.1| hybrid sensory histidine kinase BarA [Shewanella woodyi ATCC 51908]
gi|169813040|gb|ACA87624.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
Length = 937
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 158/524 (30%), Positives = 245/524 (46%), Gaps = 77/524 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A A KS+FLA +SHE+RTP+NGV+G L+ T L +QQDY+ T + S L+
Sbjct: 292 KKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHTSQQDYINTIEKSATNLL 351
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN++LD +K+E+GKL LE++ F LR ++ D +++ S +++K +EL + I VPE L
Sbjct: 352 EIINDILDFSKLEAGKLVLESLPFALRELVGDTVTILSNSAREKDIELVIDIDQSVPEAL 411
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R QI+TNL+GN+IKFT+ G + +++ L + D + +
Sbjct: 412 CGDPMRIGQILTNLIGNAIKFTDSGSVHLSLKLTDGSKDKVNI----------------- 454
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
RC + DTG GI + Q +F F Q S
Sbjct: 455 -RCE------------------------------ITDTGIGIDPQQQEILFQAFGQADSS 483
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH-NSQQM 725
ISR GGTG+GL I+K LV RM G+IG S N GSTF FT ++++
Sbjct: 484 ISRRFGGTGLGLIITKRLVNRMGGQIGCNSKANEGSTFWFTLPLETSQYPVGHFLTTEKL 543
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII 785
N+ L+++PR + K Q G++ + Q SK
Sbjct: 544 LNK-----------SMLLIEPRELSNKTLLKQFQYWGMKTTNIGSTSQLAECSLPDSKKY 592
Query: 786 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 845
+ +V + D + L+ + Q L+L + ++ +T T ++ ++
Sbjct: 593 DYAVVSCKALNPDKDTT----EQLKSIKDLSQFVLYL----VCTNEQDTHTIFDTVDKIL 644
Query: 846 MKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK---ILIVDDNNVNLKVA 902
P+ +LA L + K + + + + R+ +L VDDN NLK+
Sbjct: 645 PAPINEKVLAEIL-----IDPKSDTSSPHQLEEHAQVEPIARENLNVLAVDDNPANLKLI 699
Query: 903 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
LK + V V+ G+ A + FD FMDIQMP DG
Sbjct: 700 DTLLKELVSQVTVVDNGQGAVNIAQ-ERSFDLIFMDIQMPGTDG 742
>gi|428775680|ref|YP_007167467.1| multi-sensor hybrid histidine kinase [Halothece sp. PCC 7418]
gi|428689959|gb|AFZ43253.1| multi-sensor hybrid histidine kinase [Halothece sp. PCC 7418]
Length = 1554
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 167/580 (28%), Positives = 271/580 (46%), Gaps = 106/580 (18%)
Query: 398 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
+AS++G+ ++ R+ + +++ + KA A+ AKS+FLA +SHEIRTPMN ++G
Sbjct: 855 VASMIGNAYE---RRLME-----QSVIDQRDKANKANQAKSEFLANMSHEIRTPMNAIIG 906
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
M +L+DT L+ Q+++ + SG L++LIN++LD +K+ESGKL LE F+LR ++
Sbjct: 907 MTGLLLDTPLNNEQKEFTEIIRNSGDTLLTLINDILDFSKIESGKLALEPTRFSLRHCVE 966
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
L L + K+ +K +ELA ++ +P ++ D R RQI+ NL+ N++KFTE+G + V V
Sbjct: 967 SALDLVTQKALEKNLELAYFVDPNLPSEILADEARLRQILVNLLSNAVKFTEEGEVLVQV 1026
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINL 637
SS + SG I L
Sbjct: 1027 -----------------SSLSLFSGK-------------------------------IQL 1038
Query: 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS- 696
+ +V DTG GIP + +R+F PF QV S +R G+G+GL IS+ L M G++ S
Sbjct: 1039 LFAVHDTGVGIPPDKMNRLFRPFSQVDSSYTRRMMGSGLGLVISRRLSELMGGQMWVTSH 1098
Query: 697 -----------------IP-------NIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSV 732
+P N GSTF FT ++ N Q +
Sbjct: 1099 GAIAGSNPNDWQPEENCLPLSPSFDVNKGSTFYFTMTSDVATARRNFDTLQPLT------ 1152
Query: 733 SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQ 792
G + LVVD +V + +Q + V+ + L+ + S + ++ +++
Sbjct: 1153 -----GKQVLVVDDSATHRQVLQLQLQNWEMNVQTAASGKSALT-LLSQNDSFDLAILDT 1206
Query: 793 EVWEKDTSVSTLFVNNLRKLGCGFQSKLFL---LANSISSSRANTSTDGVSIPSVIMKPL 849
++ E D +R+ G Q L L N+ S+ R N S + ++ + KP+
Sbjct: 1207 QIPEMD---GLTLAQKIRQSPQGKQLPLLCLTALGNARSTLRENMSGNCIAW---LNKPI 1260
Query: 850 RSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR---KILIVDDNNVNLKVAAAGL 906
+ S L L + + + L ++ L + KIL+ +DN VN KVA L
Sbjct: 1261 KQSQLYNILVDHFVPHPEQTLTSSNLSDTNMSPQLADQYPFKILLAEDNVVNQKVALRML 1320
Query: 907 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+R G V G + E L +D MD+QMPE+DG
Sbjct: 1321 ERLGYRADVVANGLEVLEALR-RQSYDVILMDVQMPELDG 1359
>gi|420065400|ref|ZP_14578206.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397431837|gb|EJK22508.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
Length = 898
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 166/529 (31%), Positives = 256/529 (48%), Gaps = 95/529 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QI+TNL+GN+IKFTE G+I V V + + + V+ E+ +T G P
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ G + V+ A+ + + ++V + S L++
Sbjct: 522 --PNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 840
+++LV V +D S L K C + L L S DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLAK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629
Query: 841 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
+ ++KPL ++ L +L A+ I + +LP ++ VDDN
Sbjct: 630 --ACLLKPLTTTRLLPALVATSHALASAPLMQIDSHKLP----------MTVMAVDDNPA 677
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L V+ + G++A + Q D MDIQMP+MDG
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-KAKQLQMDLILMDIQMPDMDG 725
>gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
Length = 1500
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 162/540 (30%), Positives = 262/540 (48%), Gaps = 90/540 (16%)
Query: 425 ELKKKAEAADVA---KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
ELKK +AA + K +F A+VSHE+RTP+NGV+GML++L +TEL Q++YV+ A S
Sbjct: 258 ELKKARDAALESARIKGEFAASVSHELRTPLNGVIGMLELLSNTELTPNQREYVQVACGS 317
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
G+ L+ LI +LD +++ESGK +L++V F L+ LDDV+ L + ++Q K +E+ +++
Sbjct: 318 GETLLDLIGNILDFSRIESGKFKLDSVDFYLQETLDDVIGLLAAQAQRKDLEIGYVVAEN 377
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
VP + GD R RQI+ NLMGN++KFTE+G + + V L+E+ +K +
Sbjct: 378 VPLFMRGDATRIRQILINLMGNAVKFTEQGEVSIEVRLLEK------------KAKKLVL 425
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
+ V D TG GIPLE +R+F F
Sbjct: 426 HFEVRD------------------------------------TGIGIPLEFLARVFEAFS 449
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHN 721
Q S +R +GGTG+GL+I + LV M G++G + + GS F FT E
Sbjct: 450 QADSSTTRKYGGTGLGLAICRQLVDLMGGDLGVENNLDKGSLFWFTVPL--------EEM 501
Query: 722 SQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL----SQ 777
Q + +E G++ L+V+ + + G+ + Q L S
Sbjct: 502 IMPQAGQALTNKAEVAGLRLLIVEDSTVSRRFLGQTFSSWGMYHGCAENGQQALKMLRSA 561
Query: 778 IASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 837
+A G + +++LV++ +T + L + L I R
Sbjct: 562 VAEG-RSYDLVLVDE---------NTPDLKGLELAQQIAEDSLIASVKIILMGRQRHPVS 611
Query: 838 GVS----IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL-----LGRK 888
+S + + + KP++ S L ++ A+ +N E+ S +L + R+
Sbjct: 612 DISPLSGVVNYVAKPVQQSSLYNTIITAVK-------QNKEVVSETLSAAIEETEFSDRR 664
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+L+V+DN VN +VA L+R G V V G++A + M ++ MD MP+MDGYE
Sbjct: 665 VLVVEDNRVNQQVAVGMLERLGCRVEVVSNGQEALD-AMSGKVYELVLMDCHMPQMDGYE 723
>gi|381165686|ref|ZP_09874913.1| Putative two-component sensor histidine kinase (fragment),
unorthodox system [Phaeospirillum molischianum DSM 120]
gi|380685176|emb|CCG39725.1| Putative two-component sensor histidine kinase (fragment),
unorthodox system [Phaeospirillum molischianum DSM 120]
Length = 919
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 160/519 (30%), Positives = 250/519 (48%), Gaps = 73/519 (14%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
AKS+FLAT+SHEIRTPMNG++GM +L+DT+L + QQ + T +AS +AL+ +IN++LD
Sbjct: 278 AKSEFLATMSHEIRTPMNGIIGMTSLLLDTDLTLEQQHFANTVRASAEALLHIINDILDF 337
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+E+G+LELE +F +R +++ V+ + S + + + +EL+ + GD GR RQ
Sbjct: 338 SKMEAGRLELEQSAFEIRPLIEGVVDILSPRVRGRDIELSYLVPLETRGVFRGDTGRLRQ 397
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
I+ NL GN+IKFTE G + + L
Sbjct: 398 ILLNLAGNAIKFTEHGTVSIQASL------------------------------------ 421
Query: 616 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
QDG L VSV+DTG GIP A+ R+F F Q S +R GG+G
Sbjct: 422 ---KQDGPERAI---------LHVSVQDTGIGIPAAARDRLFGMFSQADASTARRFGGSG 469
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735
+GL+I K L+ M G+IGF S +GSTF F+ +++ S+ + + P
Sbjct: 470 LGLAICKRLLVLMGGQIGFDSEEGVGSTFWFSVPL----DRTDDTPSEDLPDNP------ 519
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI--ASGSKIINMILVEQE 793
+ + LVVD ++ + ++ G V + + L+ I A G + ++
Sbjct: 520 LRDARILVVDDNFTNREIFTHQLRAWGAAVTLADNAATGLADIRAAQGRGVPFETVILDH 579
Query: 794 VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 853
T + V CG +LA+S + +S+ +++KP+R S
Sbjct: 580 QMPGMTGLDLAAVLRADPTTCGLP---IILASSADLGSLHDKAAQLSLDQILIKPIRQST 636
Query: 854 LAASLQRAMGVGNKG----NIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRY 909
L SL +G G G N PS LL K+L+ +DN +N +VA L +
Sbjct: 637 LLDSLMTLLGRGRSGPHPINATETSSPSP-----LLSLKVLVAEDNAINQQVAVGLLVKL 691
Query: 910 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G + G +A E +M +D MD+QMP +DG +
Sbjct: 692 GHRADVADDGGEAIERVM-RGDYDLVLMDMQMPGIDGLD 729
>gi|170765863|ref|ZP_02900674.1| sensor histidine kinase/response regulator BarA [Escherichia
albertii TW07627]
gi|170125009|gb|EDS93940.1| sensor histidine kinase/response regulator BarA [Escherichia
albertii TW07627]
Length = 918
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 168/522 (32%), Positives = 249/522 (47%), Gaps = 80/522 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + E S Q
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQC- 533
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
G + V+P A+ + L I E + + S A + +
Sbjct: 534 ---------LAGKRLAYVEPNSAAAQCT------LDILSETPLEVIYSPSFSALPPEHYD 578
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
M+L+ V T L + + R L + +LA + I + ++
Sbjct: 579 MMLLGIAV----TFREPLTMQHARLLKAVSMADYLMLALPCHAQVNAEKLKQDGIGACLL 634
Query: 847 KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 906
KPL + L +L +N LP R L + ++ VDDN NLK+ A L
Sbjct: 635 KPLTPTRLLPALTEFC-----HQKQNTLLPVNDERKLAM--TVMAVDDNPANLKLIGALL 687
Query: 907 KRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 688 EDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|419764461|ref|ZP_14290701.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|397743044|gb|EJK90262.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
Length = 916
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 166/529 (31%), Positives = 256/529 (48%), Gaps = 95/529 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAVRIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QI+TNL+GN+IKFTE G+I V V + + + V+ E+ +T G P
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSVSSEFQ-----GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ G + V+ A+ + + ++V + S L++
Sbjct: 522 --PNAIPDTLNTDGLVGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 840
+++LV V +D S L K C + L L S DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLAK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629
Query: 841 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
+ ++KPL ++ L +L A+ I + +LP ++ VDDN
Sbjct: 630 --ACLLKPLTTTRLLPALVATSHALASAPLMQIDSHKLP----------MTVMAVDDNPA 677
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L V+ + G++A + Q D MDIQMP+MDG
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-KAKQLQMDLILMDIQMPDMDG 725
>gi|423109998|ref|ZP_17097693.1| signal transduction histidine-protein kinase BarA [Klebsiella
oxytoca 10-5243]
gi|423115959|ref|ZP_17103650.1| signal transduction histidine-protein kinase BarA [Klebsiella
oxytoca 10-5245]
gi|376379371|gb|EHS92124.1| signal transduction histidine-protein kinase BarA [Klebsiella
oxytoca 10-5245]
gi|376380540|gb|EHS93285.1| signal transduction histidine-protein kinase BarA [Klebsiella
oxytoca 10-5243]
Length = 917
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 171/532 (32%), Positives = 259/532 (48%), Gaps = 101/532 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNTTQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRNSLDEVVTLLAHSAHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS---IEVETELSSSKNTLSGY 603
IGDP R +QIITNLMGN+IKFTE G+I V LVE+ S +++E ++ +T G
Sbjct: 403 IGDPLRLQQIITNLMGNAIKFTEHGNIDV---LVEQRAISNSRVQIEVQI---HDTGIGI 456
Query: 604 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663
P D+ ++ F+ Q
Sbjct: 457 PERDQSRLFQAFR---------------------------------------------QA 471
Query: 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ 723
SISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S
Sbjct: 472 DASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISL 518
Query: 724 QMNNQ--PNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 780
+N P+SV ++ G K ++ A+ + + ++V V S + L
Sbjct: 519 DLNPNAVPDSVPTQCLAGKKLAYIEANAAAAQCTMELLATTPLEV-VYSPTMTALPDAH- 576
Query: 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
+++L V +D + + RKL L L S DG++
Sbjct: 577 ----YDILLAGIPVSIRDLNQHRDKLARARKLADHL---LLALPCHAQVSAETLKHDGIA 629
Query: 841 IPSVIMKPLRSSMLAASL------QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDD 894
+ ++KPL S+ L +L Q + + G+ + L ++ VDD
Sbjct: 630 --ACLLKPLTSTRLLPALTATCQTQPTLLLPRSGSTK-------------LPMTVMAVDD 674
Query: 895 NNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
N NLK+ A L+ V+ + G+ A E Q D MDIQMPEMDG
Sbjct: 675 NPANLKLIGALLEDLVQHVILCDSGQNAVERAREMQQ-DLILMDIQMPEMDG 725
>gi|424911053|ref|ZP_18334430.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392847084|gb|EJA99606.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 1224
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 171/565 (30%), Positives = 272/565 (48%), Gaps = 90/565 (15%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ L +AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L + LD Q+ + SG
Sbjct: 659 LQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDTRQKTFTDIIVKSG 718
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
AL+++IN++LD +K+E+G+++L +VSF+ ++DV+SL S + +K +EL V I V
Sbjct: 719 NALLTIINDILDFSKIEAGQMKLRSVSFDPAEAVEDVVSLLSSAALEKNIELVVRIDPSV 778
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
+IGD GRFRQI+TNL+GN++KFTE GH+ V ELS+
Sbjct: 779 FGKVIGDAGRFRQIVTNLVGNAVKFTETGHVLV----------------ELSA------- 815
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
+S+ A L + VED+G GIP + IF F Q
Sbjct: 816 -------------------------QSAEASEAILSLRVEDSGIGIPSDKLETIFDKFSQ 850
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +R H GTG+GL+I+ LVG G+I VS GS+F F +
Sbjct: 851 VDSSATRRHEGTGLGLAITVGLVGLFNGKIDVVSEVGKGSSFEVNIPF--------QMTE 902
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL---GIQVEVVSDQLQCLSQIA 779
++ + P SV+ E ++ LV+D + ++ +Q G VE + L + A
Sbjct: 903 RRRDVPPLSVAIE--NIRVLVIDDNDVNRRILTEQLQSWCIDGHAVEGGPTGIAVLQEAA 960
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
+ I+ I+++ + ++ L V + F + S+ T +
Sbjct: 961 AVGLSIDAIILDYHM----PVMNGLDVVERIRADRRFDDIAIIFLTSMDVVGDETLFTDL 1016
Query: 840 SIPSVIMKPLRSSMLAAS---------LQRA-----MGVGNKGNI----------RNWEL 875
++ + +MKP R+ +L ++ L+RA G + G+ R E+
Sbjct: 1017 NVQAHLMKPARARLLRSTLFDVVRDVRLKRARPEAFAGASDGGSSRPEGPASEKKRRAEV 1076
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
P++S+R +L+ +DN+VN V L++ G + V GKKA + +
Sbjct: 1077 PTVSVRLRPSLIDVLVAEDNDVNQIVFTQILQQTGLRFLIVGNGKKAVQ-AWEEYNPAII 1135
Query: 936 FMDIQMPEMDGYEMLPCFESFLLIA 960
MD+ MP M+G++ + L A
Sbjct: 1136 LMDVSMPVMNGHQATQAIRTAELAA 1160
>gi|331648511|ref|ZP_08349599.1| signal transduction histidine-protein kinase BarA [Escherichia coli
M605]
gi|386620350|ref|YP_006139930.1| BarA sensory histidine kinase [Escherichia coli NA114]
gi|387830630|ref|YP_003350567.1| two-component sensor kinase [Escherichia coli SE15]
gi|417663339|ref|ZP_12312919.1| BarA sensory histidine kinase ( VarS GacS) [Escherichia coli AA86]
gi|432398701|ref|ZP_19641479.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE25]
gi|432407829|ref|ZP_19650535.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE28]
gi|432423087|ref|ZP_19665629.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE178]
gi|432501226|ref|ZP_19742981.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE216]
gi|432559949|ref|ZP_19796616.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE49]
gi|432695553|ref|ZP_19930749.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE162]
gi|432707017|ref|ZP_19942097.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE6]
gi|432724221|ref|ZP_19959137.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE17]
gi|432728803|ref|ZP_19963679.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE18]
gi|432742493|ref|ZP_19977210.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE23]
gi|432920781|ref|ZP_20124370.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE173]
gi|432928465|ref|ZP_20129585.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE175]
gi|432982113|ref|ZP_20170886.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE211]
gi|432991852|ref|ZP_20180515.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE217]
gi|433097555|ref|ZP_20283736.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE139]
gi|433106999|ref|ZP_20292969.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE148]
gi|433111988|ref|ZP_20297847.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE150]
gi|281179787|dbj|BAI56117.1| two-component sensor kinase [Escherichia coli SE15]
gi|330908812|gb|EGH37326.1| BarA sensory histidine kinase ( VarS GacS) [Escherichia coli AA86]
gi|331042258|gb|EGI14400.1| signal transduction histidine-protein kinase BarA [Escherichia coli
M605]
gi|333970851|gb|AEG37656.1| BarA sensory histidine kinase [Escherichia coli NA114]
gi|430914279|gb|ELC35382.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE25]
gi|430928760|gb|ELC49306.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE28]
gi|430943360|gb|ELC63478.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE178]
gi|431027611|gb|ELD40673.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE216]
gi|431090150|gb|ELD95923.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE49]
gi|431232982|gb|ELF28584.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE162]
gi|431256962|gb|ELF49896.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE6]
gi|431264475|gb|ELF56189.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE17]
gi|431272368|gb|ELF63475.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE18]
gi|431282726|gb|ELF73605.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE23]
gi|431440069|gb|ELH21399.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE173]
gi|431442452|gb|ELH23541.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE175]
gi|431490237|gb|ELH69854.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE211]
gi|431493994|gb|ELH73585.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE217]
gi|431614532|gb|ELI83685.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE139]
gi|431625912|gb|ELI94469.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE148]
gi|431627024|gb|ELI95436.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE150]
Length = 918
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 251/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S+PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFY-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|417086226|ref|ZP_11953462.1| hybrid sensory histidine kinase BarA [Escherichia coli cloneA_i1]
gi|355350751|gb|EHF99947.1| hybrid sensory histidine kinase BarA [Escherichia coli cloneA_i1]
Length = 918
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 251/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S+PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|91212153|ref|YP_542139.1| hybrid sensory histidine kinase BarA [Escherichia coli UTI89]
gi|117625014|ref|YP_854002.1| hybrid sensory histidine kinase BarA [Escherichia coli APEC O1]
gi|218559774|ref|YP_002392687.1| hybrid sensory histidine kinase BarA [Escherichia coli S88]
gi|218690909|ref|YP_002399121.1| hybrid sensory histidine kinase BarA [Escherichia coli ED1a]
gi|222157472|ref|YP_002557611.1| Signal transduction histidine-protein kinase barA [Escherichia coli
LF82]
gi|237706586|ref|ZP_04537067.1| sensor-regulator [Escherichia sp. 3_2_53FAA]
gi|331658897|ref|ZP_08359839.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA206]
gi|386600777|ref|YP_006102283.1| sensor histidine kinase/response regulator BarA [Escherichia coli
IHE3034]
gi|386603161|ref|YP_006109461.1| hybrid sensory histidine kinase BarA [Escherichia coli UM146]
gi|387618052|ref|YP_006121074.1| hybrid sensory histidine kinase BarA [Escherichia coli O83:H1 str.
NRG 857C]
gi|416336791|ref|ZP_11673261.1| hybrid sensory histidine kinase BarA [Escherichia coli WV_060327]
gi|417285892|ref|ZP_12073183.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW07793]
gi|419915998|ref|ZP_14434329.1| hybrid sensory histidine kinase BarA [Escherichia coli KD1]
gi|419944637|ref|ZP_14461112.1| hybrid sensory histidine kinase BarA [Escherichia coli HM605]
gi|422356880|ref|ZP_16437553.1| response regulator receiver domain protein [Escherichia coli MS
110-3]
gi|422369450|ref|ZP_16449850.1| response regulator receiver domain protein [Escherichia coli MS
16-3]
gi|422750197|ref|ZP_16804108.1| hsp90-like protein [Escherichia coli H252]
gi|422754447|ref|ZP_16808273.1| hsp90-like protein [Escherichia coli H263]
gi|422840772|ref|ZP_16888742.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H397]
gi|432359100|ref|ZP_19602318.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE4]
gi|432363949|ref|ZP_19607107.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE5]
gi|432442206|ref|ZP_19684544.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE189]
gi|432447321|ref|ZP_19689619.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE191]
gi|432554824|ref|ZP_19791543.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE47]
gi|432574958|ref|ZP_19811433.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE55]
gi|432589087|ref|ZP_19825441.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE58]
gi|432598932|ref|ZP_19835203.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE62]
gi|432617948|ref|ZP_19854058.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE75]
gi|432755637|ref|ZP_19990183.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE22]
gi|432779717|ref|ZP_20013939.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE59]
gi|432788709|ref|ZP_20022837.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE65]
gi|432822145|ref|ZP_20055835.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE118]
gi|432823655|ref|ZP_20057325.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE123]
gi|432899892|ref|ZP_20110402.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE192]
gi|433006236|ref|ZP_20194662.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE227]
gi|433008904|ref|ZP_20197318.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE229]
gi|433015021|ref|ZP_20203360.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE104]
gi|433024604|ref|ZP_20212583.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE106]
gi|433029675|ref|ZP_20217529.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE109]
gi|433154854|ref|ZP_20339790.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE176]
gi|433164739|ref|ZP_20349472.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE179]
gi|433169726|ref|ZP_20354349.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE180]
gi|433325456|ref|ZP_20402550.1| hybrid sensory histidine kinase BarA [Escherichia coli J96]
gi|91073727|gb|ABE08608.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
coli UTI89]
gi|115514138|gb|ABJ02213.1| BarA, sensory histidine kinase; two-component regulator with UvrY
[Escherichia coli APEC O1]
gi|218366543|emb|CAR04296.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli S88]
gi|218428473|emb|CAR09399.2| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli ED1a]
gi|222034477|emb|CAP77219.1| Signal transduction histidine-protein kinase barA [Escherichia coli
LF82]
gi|226899626|gb|EEH85885.1| sensor-regulator [Escherichia sp. 3_2_53FAA]
gi|294490869|gb|ADE89625.1| sensor histidine kinase/response regulator BarA [Escherichia coli
IHE3034]
gi|307625645|gb|ADN69949.1| hybrid sensory histidine kinase BarA [Escherichia coli UM146]
gi|312947313|gb|ADR28140.1| hybrid sensory histidine kinase BarA [Escherichia coli O83:H1 str.
NRG 857C]
gi|315289301|gb|EFU48696.1| response regulator receiver domain protein [Escherichia coli MS
110-3]
gi|315298721|gb|EFU57975.1| response regulator receiver domain protein [Escherichia coli MS
16-3]
gi|320194925|gb|EFW69554.1| hybrid sensory histidine kinase BarA [Escherichia coli WV_060327]
gi|323950997|gb|EGB46873.1| hsp90-like protein [Escherichia coli H252]
gi|323957202|gb|EGB52926.1| hsp90-like protein [Escherichia coli H263]
gi|331053479|gb|EGI25508.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA206]
gi|371605783|gb|EHN94391.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H397]
gi|386251133|gb|EII97300.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW07793]
gi|388382398|gb|EIL44253.1| hybrid sensory histidine kinase BarA [Escherichia coli KD1]
gi|388418028|gb|EIL77850.1| hybrid sensory histidine kinase BarA [Escherichia coli HM605]
gi|430875621|gb|ELB99156.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE4]
gi|430884405|gb|ELC07345.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE5]
gi|430965454|gb|ELC82875.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE189]
gi|430972167|gb|ELC89165.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE191]
gi|431082175|gb|ELD88489.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE47]
gi|431106488|gb|ELE10696.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE55]
gi|431119110|gb|ELE22125.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE58]
gi|431128802|gb|ELE30978.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE62]
gi|431152840|gb|ELE53766.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE75]
gi|431300941|gb|ELF90488.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE22]
gi|431325632|gb|ELG13015.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE59]
gi|431335709|gb|ELG22838.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE65]
gi|431367214|gb|ELG53700.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE118]
gi|431378180|gb|ELG63171.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE123]
gi|431425032|gb|ELH07107.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE192]
gi|431512604|gb|ELH90695.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE227]
gi|431522643|gb|ELH99875.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE229]
gi|431529338|gb|ELI06040.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE104]
gi|431533828|gb|ELI10321.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE106]
gi|431542224|gb|ELI17463.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE109]
gi|431672880|gb|ELJ39114.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE176]
gi|431685570|gb|ELJ51140.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE179]
gi|431686002|gb|ELJ51568.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE180]
gi|432346273|gb|ELL40759.1| hybrid sensory histidine kinase BarA [Escherichia coli J96]
Length = 918
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 251/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S+PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|381158345|ref|ZP_09867578.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380879703|gb|EIC21794.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 1274
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 179/330 (54%), Gaps = 41/330 (12%)
Query: 426 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 485
L ++A++A+ AKS+FLA +SHEIRTPMNGV+GM +L++T +D Q+ Y ++SG++L
Sbjct: 544 LAEQADSANRAKSEFLANMSHEIRTPMNGVIGMTSLLLETPMDDQQRQYAEIIRSSGESL 603
Query: 486 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 545
+ +IN++LD +K+E+G+LELEA+ F+LR +LDD+ + + ++ +K +E VP
Sbjct: 604 LGVINDILDFSKIEAGRLELEAIDFDLRNVLDDLAASLALRAHEKSLEFICAADAGVPAQ 663
Query: 546 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 605
L GD R RQI+TNL GN+IKFTE G + V V+L E+
Sbjct: 664 LRGDASRLRQILTNLAGNAIKFTEVGEVSVRVHLAEQ----------------------- 700
Query: 606 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665
Q S + S+ + L V DTG GIP + + R+F F QV
Sbjct: 701 --------------QPASVDSLEDSAPTRVRLHFRVADTGIGIPPDKRDRLFQKFSQVDA 746
Query: 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 725
S +R GGTG+GL+IS+ L M GEIG S P GSTF F ++ N
Sbjct: 747 SSTRRFGGTGLGLAISRQLTELMGGEIGVDSQPGQGSTFWFELELERLPEDADASN---- 802
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSR 755
+ P + + G + L+VD +V R
Sbjct: 803 RDAPAQPAPDLSGKRVLIVDDNATNRQVLR 832
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
+IL+ +DN +N +VA LKR G V G++A L H + MD+QMP MDG
Sbjct: 1004 RILLAEDNQINQQVALGLLKRLGIEADVVTNGEEALAALR-QHPYALVLMDVQMPVMDGL 1062
Query: 948 EMLPCFES 955
E C +
Sbjct: 1063 EATRCIRT 1070
>gi|253701316|ref|YP_003022505.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
gi|251776166|gb|ACT18747.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
Length = 818
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 159/539 (29%), Positives = 259/539 (48%), Gaps = 76/539 (14%)
Query: 408 ATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL 467
++VNR ++EE + + A++A+ AKS FLA +SHEIRTPM GVLGM ++L++T+L
Sbjct: 159 SSVNR--QLEESLEEVRRAMESAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELLLNTDL 216
Query: 468 DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKS 527
Q +V + + SG+AL+ +IN +LD +K+E+G++ELE + F+L + D +++F+ +
Sbjct: 217 SKEQARFVESVRRSGEALLGIINNILDFSKIEAGRMELETIPFDLHQLAADAVAMFAEDA 276
Query: 528 QDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 587
KG+ L+ I +P GDPGR RQ++ NL+GN++KFT +G + ++V L E
Sbjct: 277 AKKGIALSCRIEPGLPGMFQGDPGRLRQVMVNLLGNAVKFTPEGAVTLSVSLARE----- 331
Query: 588 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 647
P R V+VEDTG G
Sbjct: 332 ----------------PALVR------------------------------VTVEDTGIG 345
Query: 648 IPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT 707
I E+Q RIF F Q S++R +GGTG+GL+I+K L M G + S P G++F+FT
Sbjct: 346 ISRESQERIFDHFAQGDESMTRRYGGTGLGLAIAKQLTELMGGVMELSSEPGEGASFSFT 405
Query: 708 AVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV 767
+P S + +AL+ P + LG+ ++
Sbjct: 406 VAL----------KPHHKAPRPERSYSALRSKRALLASDDPELQETLLELTGGLGMDLDC 455
Query: 768 VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
V D L ++ + +++L++ V D +R + G +L LLA
Sbjct: 456 VGDAPGALCRLLAAP--FDLVLMDHCVAGTD---GLALAATIRSIAVGHCVRLVLLAEEP 510
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
++ A + + + + L L A+L A+ + + +LR L R
Sbjct: 511 EAAPAERVRE-IEVTLLRRTNLTREGLYAALASAL---GMEEEQGEGEDAPTLRRL---R 563
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++L+V+DN VN +V L+ G V E G A + + ++D FMD QMP +DG
Sbjct: 564 QVLLVEDNVVNQEVGRGMLESLGCRVKVAENGLAALKEVQ-RRKYDLIFMDCQMPVLDG 621
>gi|432890023|ref|ZP_20103069.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE165]
gi|431432897|gb|ELH14573.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE165]
Length = 918
Score = 212 bits (540), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 251/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S+PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFY-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|163802963|ref|ZP_02196850.1| sensor histidine kinase/response regulator [Vibrio sp. AND4]
gi|159173253|gb|EDP58081.1| sensor histidine kinase/response regulator [Vibrio sp. AND4]
Length = 931
Score = 212 bits (540), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 161/527 (30%), Positives = 259/527 (49%), Gaps = 88/527 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T++ +Q DY++T + S L+
Sbjct: 281 KKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQMSNSQMDYLQTIEKSANNLL 340
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+GKL LE + F R L++V++L + + +K +E+ + I ++P+ L
Sbjct: 341 NIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKSLEITLKIDPKIPQGL 400
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R +QI+TNL+GNSIKFTE+G+I ++V + + DS+E++
Sbjct: 401 VGDPLRIQQILTNLVGNSIKFTERGNIDISVEMRSQSGDSVELQ---------------- 444
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
V DTG GI Q+++F F Q S
Sbjct: 445 --------------------------------FMVRDTGIGISERQQAQLFQAFSQADAS 472
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR +GGTG+GL I++ LV +M GEI S + GSTF FT H+++
Sbjct: 473 ISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRL---------HSTE--- 520
Query: 727 NQPNSVSSEFQ---GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 783
P S E + G + L+V+P A V++ + + GI V S L +
Sbjct: 521 -IPMSDLIEVELLTGKQLLLVEPNMQAASVTQQLLSQEGILVTYRS----SLPESDENYD 575
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLG----CGFQSKLFLLANSISSSRANTSTDGV 839
+ + L + + D +++ +++ G S LA+ + ++
Sbjct: 576 YVLLNLAANQTY--DEQSVAVWIEQAKRMAPSVIMGTPSTELALADKVMNAHQ------- 626
Query: 840 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 899
+ KPL L SL + I E P+++ R L +L VDDN NL
Sbjct: 627 --IQCLTKPLSRRKLLQSLITDHIETPQAMIAAIE-PAVNER---LSLTVLAVDDNPANL 680
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K+ +A LK V G++A L +++D MDIQMP MDG
Sbjct: 681 KLISALLKERVETVTACSNGQQAVN-LATENKYDLILMDIQMPLMDG 726
>gi|432802971|ref|ZP_20036927.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE84]
gi|431347500|gb|ELG34388.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE84]
Length = 918
Score = 212 bits (540), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 251/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S+PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSLPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|254507539|ref|ZP_05119673.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Vibrio parahaemolyticus 16]
gi|219549609|gb|EED26600.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Vibrio parahaemolyticus 16]
Length = 929
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 181/594 (30%), Positives = 280/594 (47%), Gaps = 89/594 (14%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L ++ I + ++ H I QAT + +E
Sbjct: 208 NMVDRIRRGHLDVRIEGKMHGELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 267
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 268 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTKLTNSQTDY 327
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
+ T + S L+++IN++LD +K+E+GKL LE++ F+ + L++V+SL + + +KG+EL
Sbjct: 328 LNTIEKSATNLLNIINDILDFSKLEAGKLALESIPFDFQESLEEVVSLQATSAHEKGLEL 387
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P L+GD R +Q++TNL+GNSIKFTE G+I ++V E+
Sbjct: 388 TLKIDPKIPAGLVGDSLRIQQVLTNLVGNSIKFTEHGNIDISV--------------EMR 433
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
S K D++ L V DTG GI Q+
Sbjct: 434 SQKE----------------------------------DVVELQFMVRDTGIGISERQQA 459
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV +M GEI S + GSTF FT
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRL---- 515
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 774
+S M + + L+V+P A V++ + + G+ V S
Sbjct: 516 ------HSTDMPVTEMVDTDSLKQRSLLLVEPNMQAASVTQQQLVQAGLVVTYRS----A 565
Query: 775 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 834
L + A + + L E +TS V + L C + + S+
Sbjct: 566 LPEDAEQFDYVLLNLAPNR--EHETSAVEQQVEH--ALRCAPH-----VVVGVPSTALAL 616
Query: 835 STDGV-SIP-SVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIV 892
S D + S P I KPL L +L N+ N+ E P + ++ L ++ V
Sbjct: 617 SDDLIQSYPIHCITKPLSRKRLLQTLS-----ANQDNLPVIE-PEVVVQDETLPLTVMAV 670
Query: 893 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
DDN NLK+ +A L+ V+ G A + H FD MDIQMP MDG
Sbjct: 671 DDNPANLKLISALLQERVERVITCTNGLDAVQQAQERH-FDIILMDIQMPHMDG 723
>gi|117926233|ref|YP_866850.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117609989|gb|ABK45444.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 1202
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 168/540 (31%), Positives = 270/540 (50%), Gaps = 89/540 (16%)
Query: 425 ELKK---KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
ELKK AE+A+ +KS+FLA +SHEIRTPMNGV+GM+++L +TEL QQ ++RTA+ S
Sbjct: 527 ELKKAMLDAESANRSKSEFLANMSHEIRTPMNGVVGMMELLSNTELTPEQQSHMRTARNS 586
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
++L+++IN++LD +K+E+GKLELE ++F+L +++DV +L + + + +EL
Sbjct: 587 AESLLTIINDILDFSKIEAGKLELEEIAFDLAELVEDVTALLAQRVDSEKLELLHNAPAD 646
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
+P + GDP R RQ++ NL+GN++KFT +G + V + + + D++ V TE+ ++T
Sbjct: 647 LPMQVAGDPTRLRQVLVNLVGNAVKFTPEGEVEVRMTVERQDADTVTVLTEV---RDTGI 703
Query: 602 GYPVADRCHSWKGFKTFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660
G A R + F+ F Q DGST
Sbjct: 704 GIDEAVRP---RLFRMFTQADGST------------------------------------ 724
Query: 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 720
+R GGTG+GL+ISK LV M GE+GF S+ GSTF F F +
Sbjct: 725 -------TRRFGGTGLGLAISKQLVELMGGEVGFSSVMGQGSTFWFRITFPIVA------ 771
Query: 721 NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIA 779
+Q + +S QG++ALVVD + ++ G+ +E S + Q L +IA
Sbjct: 772 KAQAVAGGVDS----LQGLRALVVDDNATNRNLLGRYLSNWGVTHLECASGK-QALEKIA 826
Query: 780 SGSK--------IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
+K I+++++ + ++ + + + +L S + R
Sbjct: 827 DAAKFGLSFDLAILDLLMPGMDGLALAERITQMVQDK------QIKPLRMVLLTSAHARR 880
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNK---GNIRNWELPSMSLRHLLLGRK 888
GV + + KP+R + L A L + M G + G + +MS
Sbjct: 881 EELEQAGVV--AALSKPIRQAQLRALLGQVM-RGERVVGGLVERISQNNMS---ATFDAA 934
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+L+V+D+ +N +VA L G V G + L H++D MDIQMP MDGYE
Sbjct: 935 VLLVEDHPINQQVARGMLAGLGCRVEIANDGHEGVRLF-ARHRYDLVLMDIQMPGMDGYE 993
>gi|254483091|ref|ZP_05096325.1| Two component regulator three Y motif family [marine gamma
proteobacterium HTCC2148]
gi|214036613|gb|EEB77286.1| Two component regulator three Y motif family [marine gamma
proteobacterium HTCC2148]
Length = 1484
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 163/536 (30%), Positives = 256/536 (47%), Gaps = 88/536 (16%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
KV+E + + +K AE+A+ AKS FLAT+SHEIRTPM+G++GM ++L+ T+L Q+ +
Sbjct: 831 KVQERTRELQDAQKSAESANQAKSDFLATMSHEIRTPMHGMIGMTELLLHTDLSEQQKQF 890
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
R A SG++L+SLINE+LD +K+E+ K+ELE + F+L ++D++ L + KG+ L
Sbjct: 891 ARAAHNSGESLLSLINEILDFSKIEASKVELENIEFDLVELIDEICYLQGEPAARKGLAL 950
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
P+TL+GDP + RQ++ NL+ N+IKFT G+I
Sbjct: 951 NSIFDQTPPKTLLGDPTKVRQVVMNLVSNAIKFTHTGNI--------------------- 989
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
D C ++K + ++ +SV+DTG G+ Q+
Sbjct: 990 ------------DVCVTYKN-------------SEDDRNKNDVTISVKDTGIGMDAATQN 1024
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
R+F F Q S +R +GGTG+GLSISK+ + M G I S PNIG+ + T F
Sbjct: 1025 RVFEVFTQADTSTTREYGGTGLGLSISKHYIELMNGTIAIESQPNIGTDLSVTVPF---- 1080
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 774
+ Q + PN +A+ + K+ H+ LG + E +
Sbjct: 1081 ---SVVQPQTIKIDPN--------RQAITICSNESVTKMINSHLSLLGWRAEAEKN---- 1125
Query: 775 LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT 834
+ +KI +++++ + + + + + N+ G LL SI+ SR ++
Sbjct: 1126 ----LNATKIPELVVIDADALDSNPEILSTIRNSDVTHG--------LLVCSINQSRLDS 1173
Query: 835 STDGVSIPSVIMKPL-RSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
D I KP+ R S+ A + K + E S L IL+ +
Sbjct: 1174 VFDNW---QRISKPVTRDSLETAITKHLAQKPRKPQFSSIEHDEDSGPRL----NILVAE 1226
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ-FDACFMDIQMPEMDGYE 948
D N K+ L G V V GK+A E + HQ +D FMD QMP MDG+E
Sbjct: 1227 DVETNRKIIKEMLAILGHNVEVVINGKQAFEKVG--HQSYDLIFMDCQMPIMDGFE 1280
>gi|418591976|ref|ZP_13155856.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P2]
gi|375049177|gb|EHS41684.1| sensor/response regulator hybrid [Pseudomonas aeruginosa MPAO1/P2]
Length = 919
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 167/551 (30%), Positives = 256/551 (46%), Gaps = 91/551 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + ++A + AKS+FLA +SHEIRTP+NGVLGML +L DT LD
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q YV T +SG AL+S+IN++LD A++ESGKL LE + F+L +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L + + VP L GDP R RQ++ NL+ N++KFT +GH+ V V
Sbjct: 501 KRLHLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ F++ G L+ SV D+G GI
Sbjct: 550 --------------------------RRFDEGGRE-----------RLLYSVSDSGIGIS 572
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+AQ +F F Q S R +GG+G+GL+IS+ LV M G I S P G+ F+
Sbjct: 573 AQAQKTLFESFSQADSSTXRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632
Query: 710 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +Q + ++P ++SE L +D + ++R G++VE
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679
Query: 769 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 822
+CL + + + +LV W S+ TL+ Q + L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728
Query: 823 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L + +G+ + + V +K LR ++L +R G E P
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDERPPD 788
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFM 937
+ IL+ +DN VN V L + G AV G+ A E L P+ M
Sbjct: 789 A-------PCILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 841
Query: 938 DIQMPEMDGYE 948
D +MPEMDG+E
Sbjct: 842 DGEMPEMDGFE 852
>gi|297521246|ref|ZP_06939632.1| hybrid sensory histidine kinase BarA [Escherichia coli OP50]
Length = 583
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 251/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 119 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 178
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 179 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 238
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 239 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 295
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 296 DQSRLFQAFR---------------------------------------------QADAS 310
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 311 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 370
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 371 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 427
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 428 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 459
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP+ L + ++ VD
Sbjct: 460 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPATDESKLAM--TVMAVD 510
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 511 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 562
>gi|218782281|ref|YP_002433599.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
gi|218763665|gb|ACL06131.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
alkenivorans AK-01]
Length = 1152
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 165/538 (30%), Positives = 257/538 (47%), Gaps = 65/538 (12%)
Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
A++E +L +A A+ AKSQFLA +SHEIRTPMNG++GM +L+DT LD Q
Sbjct: 489 AQLEASIKQAEQLANEAFVANNAKSQFLANMSHEIRTPMNGIIGMAALLLDTPLDGQQTV 548
Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
+V+T + S ALV++IN++LD +KVE+GKLELE F+L+A L+ + + + K+ +KG+E
Sbjct: 549 FVQTVRKSAHALVTIINDILDFSKVEAGKLELEEAPFSLQAELEAMGDVLAVKAHEKGLE 608
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
A + VP+ LIGD R RQ++ N++GN++KFT+ G + + + + +D T L
Sbjct: 609 YACIMHPDVPDALIGDSIRLRQVLVNIVGNAVKFTDAGEVSLEISMA--AMDDARC-TLL 665
Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
S K+T +G P D+ +
Sbjct: 666 FSIKDTGAGLP-EDKIET------------------------------------------ 682
Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
+F F Q S++R GGTG+GL+IS+ LV M GEI + G+ F FTA F
Sbjct: 683 --VFEAFAQADSSVTRKFGGTGLGLAISQSLVRLMGGEIIAENREARGAHFRFTASFA-- 738
Query: 714 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
Q ++ +++ K L+VD P +Q+ G S
Sbjct: 739 ------LQEQGAEHESSAIDPCLADKKILIVDDCPATRTSISLILQQWGCLCREASGGRS 792
Query: 774 CLSQIASG---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
L Q+ N +LV+Q + + D S + ++++ ++L L+A + +
Sbjct: 793 ALEQLQRAVDKHAPFNAVLVDQAMPDMDGSA---LIQSIKENPAYEGARLALMA-PLGAP 848
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
+ +V+ KP+R L L G + E + S + +L
Sbjct: 849 GLKAAKSNQDAAAVLTKPVRKKQLYNLLLDLFGNAPETCAAAPEQETKSAQA-ASEFTVL 907
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+V+DN VN VA L++ G + VE G++A E L Q D MDIQMP MDG E
Sbjct: 908 LVEDNQVNQMVAKGILRKLGYKTLVVENGQEALEFL-AEKQVDIILMDIQMPVMDGLE 964
>gi|121591384|ref|ZP_01678667.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
2740-80]
gi|121546763|gb|EAX56935.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
2740-80]
Length = 727
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 174/597 (29%), Positives = 278/597 (46%), Gaps = 100/597 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF FT
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTE 520
Query: 715 STSNE-HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
N+ +N+ +N++ L+++P A + + + + G++V + +
Sbjct: 521 LPLNDGYNADSLNHR-----------HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569
Query: 771 QLQCLSQI---ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ + + SK N LV E+W + T + G S LA+ +
Sbjct: 570 EQHVYDYVLLNLAPSKETNPTLV--ELWVQRALAMT------HNVIVGVPSTELALADQL 621
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 622 MQRYP---------VKCISKPLSRKKLLQTL-----AAQQPQLANTSLPKPQADKLPLC- 666
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
++ VDDN NLK+ A L+ VV G++A E QFD MDIQMP M
Sbjct: 667 -VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ-SRQFDIILMDIQMPHM 721
>gi|390448937|ref|ZP_10234551.1| hybrid sensory histidine kinase [Nitratireductor aquibiodomus RA22]
gi|389665252|gb|EIM76726.1| hybrid sensory histidine kinase [Nitratireductor aquibiodomus RA22]
Length = 945
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 178/594 (29%), Positives = 274/594 (46%), Gaps = 98/594 (16%)
Query: 384 WPLLAISTSIGILVIASLVG--HIFQATVNRIAKVEEDYHG----MMELKKKAEAADVAK 437
W L ++ G +V ASL+ IF+ + RI+K ++ H + K KA++AD K
Sbjct: 217 WGLFGVA---GAMVGASLLLALRIFEPMIRRISKAHQELHSANISLAAEKIKAQSADRTK 273
Query: 438 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497
S+FLA +SHEIRTPMNGV+GM ++L T LD Q +V SG AL+++IN++LD +K
Sbjct: 274 SEFLANMSHEIRTPMNGVMGMAELLARTNLDQRQAMFVDVIVKSGTALLTIINDILDFSK 333
Query: 498 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 557
+++G+L+L+ F +R ++DV +L S + +K +EL V + + + IGD GRFRQI
Sbjct: 334 IDAGQLKLDEAPFRIREAIEDVAALVSSRVAEKNLELIVRVDPELSASFIGDVGRFRQIA 393
Query: 558 TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 617
TNL+GN++KFTE+GH+ + V SG
Sbjct: 394 TNLVGNAVKFTERGHVLIDV-----------------------SG--------------- 415
Query: 618 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 677
G+T+ + V VEDTG GIP + +F F QV S +R H GTG+G
Sbjct: 416 -KTKGNTA----------QVTVRVEDTGIGIPPDKLEAVFDKFAQVDSSSTRRHEGTGLG 464
Query: 678 LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 737
L+I+ L M G I S GSTF FT F ++ + + + P VS
Sbjct: 465 LAIAVKLAELMGGSIEATSEVGKGSTFVFTLPFAIDTANAIQATA------PVDVS---- 514
Query: 738 GMKALVVDPRPIRAKVSRYHIQRLGIQ---VEVVSDQLQCLSQIASGSKIINMILVEQEV 794
G + V+D I ++ + G + E + L L + A ++ ++++ ++
Sbjct: 515 GARVFVIDDNAINREILLEQLNSWGFECAAAESGAVGLAFLQRSAQLDARVDCVILDYQM 574
Query: 795 WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML 854
+ + + V K +L S+ + I + + KP RSSML
Sbjct: 575 PDMNGA----DVAKKIKADPALAGIPLVLLTSVDQTDTARLVSECGIAAHLNKPTRSSML 630
Query: 855 AASLQRAMGVGNK------GNIRNWELP-----SMSLRHLLLGRK-------ILIVDDNN 896
+L M V G+ P S L L G + +L+ +DN
Sbjct: 631 LETLVSVMQVSRALPDQPLGDAHAPAKPIQIHASTPLERGLSGSRGANGPLDVLVAEDNE 690
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDGYE 948
VN V + L G GK A E+L + P MD+ MPEM+G+E
Sbjct: 691 VNQLVFSQILDGMGLKYRIAGNGKTAVEMLRTLKPR---LVLMDVSMPEMNGFE 741
>gi|374292899|ref|YP_005039934.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
gi|357424838|emb|CBS87718.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
Length = 1297
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 182/630 (28%), Positives = 275/630 (43%), Gaps = 106/630 (16%)
Query: 381 KAPWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQF 440
KA P L T+ +L + G + + IA+ + M + AEAA AKS+F
Sbjct: 439 KAGKPFLVEYTASPMLADGRVEGAVV--VFHEIAERKRAEAAMQRARLAAEAASRAKSEF 496
Query: 441 LATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500
LA +SHEIRTPMN +LG++ +L TEL Q DYV + S ++L+ ++N++LD +KVE+
Sbjct: 497 LANMSHEIRTPMNAILGLIHLLQQTELTDRQADYVHKVRVSAQSLLGILNDILDFSKVEA 556
Query: 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNL 560
GKLELE V+F L +L + + +Q+K +++ ++ VP LIGDP R +QI+ NL
Sbjct: 557 GKLELEQVAFRLDDLLQTLAVIVGSAAQEKDIDVLFSVAPDVPLDLIGDPLRLQQILINL 616
Query: 561 MGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQ 620
GN+IKFTE G + V V +
Sbjct: 617 AGNAIKFTETGEVVVAVRV----------------------------------------- 635
Query: 621 DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSI 680
+S S D L +V DTG GI E + R+F F Q S +R GGTG+GL+I
Sbjct: 636 -------RSLSNDRAVLDFAVRDTGIGIAPEQRDRLFQAFSQGDSSTTRRFGGTGLGLAI 688
Query: 681 SKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ--PNSVSSEFQG 738
LV MKG + S P GS F F A FG + + P V +
Sbjct: 689 CARLVRLMKGAMEVESEPGKGSVFRFHAEFGLHAGSGAGGGFAAGPAGRLPRQVPRD--- 745
Query: 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIASGSKIINMILVEQEVW 795
+ LVVD +V G V +D + L + A+ +++L++ W
Sbjct: 746 LTVLVVDDNATAREVLSEIAAAFGWAVTACADGQAAIDELERAAAAGNPYDVVLMD---W 802
Query: 796 EK--------------DTSVSTLFV-----NNLRKLGCGFQ-------------SKLFLL 823
+ D T + +LG F+ + L
Sbjct: 803 KMPGMDGIEAARRIRVDARAGTPMIIVISGYGRDRLGARFEEAGAAGFLVKPVTASTLLD 862
Query: 824 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHL 883
A +I+ +R +GV +P+ I P A + R G +
Sbjct: 863 AVTIAYARTAPDGEGVRLPASIPDP------AYPMLRFEAGGGGRPDGGLSGAAWDASRA 916
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ-FDACFMDIQMP 942
L GR++L+ DDN ++ +VA L+R GA V G++A + + Q FDA +D+QMP
Sbjct: 917 LHGRRLLLADDNAISQQVAREILERAGAVVTVAATGRQAADCVRAADQPFDAVLLDVQMP 976
Query: 943 EMDGY------EMLPCFESFLLIAILVWKL 966
+MDG+ LP + +IA+ L
Sbjct: 977 DMDGFAATAAIRALPGGRNLPIIAMTASAL 1006
>gi|212556606|gb|ACJ29060.1| PAS domain protein [Shewanella piezotolerans WP3]
Length = 1831
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 159/552 (28%), Positives = 260/552 (47%), Gaps = 70/552 (12%)
Query: 401 LVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLD 460
LVG+I T + E+ + K A+ A AKS FLA +SHEIRTPMN ++GM
Sbjct: 979 LVGNIIDITTEK-----ENARQLEIAVKTADEATRAKSDFLANMSHEIRTPMNAIIGMSY 1033
Query: 461 MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 520
++ T+L+ Q DYV Q S ++L+ +IN++LD +K+E+ KLELE FNL D+++
Sbjct: 1034 LIQQTDLNRKQSDYVTKIQNSAESLLGIINDILDFSKIEASKLELEMTPFNLNDSFDNLV 1093
Query: 521 SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580
+ + K+Q KG+EL + I +P LIGDP R QI+ NL N++KFT++G I + V
Sbjct: 1094 QIIAHKTQQKGLELLIDIEPNLPVDLIGDPLRLGQILINLANNAMKFTDEGEIIIKARAV 1153
Query: 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 640
E+ + +E +
Sbjct: 1154 EQHEQQVTIE------------------------------------------------FA 1165
Query: 641 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700
V+DTG G+ E +++F F Q S +R +GGTG+GL+ISK L M G+I S
Sbjct: 1166 VKDTGIGMTPEQLNKLFKSFSQADASTTRKYGGTGLGLTISKTLTELMAGKIWVESSYGE 1225
Query: 701 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 760
GSTF FTA F + S + S G+ L+VD ++ +
Sbjct: 1226 GSTFLFTAKFAIAAVNSAIEKAS---------SKSLLGLPLLIVDDSVAAREILFTLSKS 1276
Query: 761 LGIQVEVVSDQLQCLSQIA---SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817
LG + ++ + + + ++ S ++L + ++ + D + L Q
Sbjct: 1277 LGFRPDLAASGSEAIEKVKLAHSQGNPYKLLLADWKMPQMDGLALCGAIQG--DLSLVNQ 1334
Query: 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG-VGNKGNIRNWELP 876
KL ++ + + S I KP+ +S L ++ MG ++ +
Sbjct: 1335 PKL-VIVTAYDRDEMLKQAGTAELDSAITKPVSASTLLDTVMAVMGKKSSQPKVTESGKL 1393
Query: 877 SMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACF 936
++S ++G +L+V+DN++N ++A L G V G++A ++ + + +DA
Sbjct: 1394 NISAAKDIVGAHVLLVEDNDINQEIATELLNMAGIEVSTACNGQEAVDMAI-ANSYDAIL 1452
Query: 937 MDIQMPEMDGYE 948
MDIQMP MDGYE
Sbjct: 1453 MDIQMPIMDGYE 1464
>gi|119944301|ref|YP_941981.1| hybrid sensory histidine kinase BarA [Psychromonas ingrahamii 37]
gi|119862905|gb|ABM02382.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
Length = 926
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 159/538 (29%), Positives = 250/538 (46%), Gaps = 106/538 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KKKA+ A + KS+FLA +SHE+RTP+NGV+G L+ T+L Q DY++T + S L+
Sbjct: 281 KKKAQQAALVKSEFLANMSHELRTPLNGVIGFARQLLKTQLTTNQIDYLQTIERSAGNLL 340
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN++LD +K+E+GK LE + F+LR +D+ + L + + +K +EL++ + VP +
Sbjct: 341 KIINDILDFSKLEAGKFTLEHIPFDLRDCIDETMHLLAPSAHEKNLELSLIVDPEVPYEV 400
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD R +QI+TNL+GN+IKFTEKG I + + +EE
Sbjct: 401 FGDAMRLQQILTNLIGNAIKFTEKGDIKIQIQRIEEQT---------------------- 438
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
N+D + L + + D+G GI + Q+++F F Q S
Sbjct: 439 ------------NRDNK-----------VTLKIMISDSGIGISKKQQAQLFKAFGQADTS 475
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R +GGTG+GL I++ LV M+G I +SIP GSTF FT V + +
Sbjct: 476 ITRQYGGTGLGLVITQKLVKEMQGRIELISIPEQGSTFGFTIVIEKSARAA--------- 526
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
N S Q K LV + A L C +Q+ K
Sbjct: 527 -LSNIALSRLQKQKVLVFETNEYAA--------------------LAC-TQLLRQWKTEP 564
Query: 787 MILVEQEVWEK--DTSVSTLF-----VNNLRKL------GCGFQSKLFLLANSISSSRAN 833
++ ++ W++ +T ++ V NL+ L F + +L NS +
Sbjct: 565 LLAKTEQQWQQFLNTRYDSIVIGYSHVKNLQPLFKYIKQAKSFSGNVIILVNSSDPGIYD 624
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR----NWELPSMSLRHLLLGRKI 889
T + + KP+ A +L + +K + + LP + + +
Sbjct: 625 TLM-AAGVTHCLSKPINHKSFANAL-----ISDKTDFNTITYHKALPIFMRKDI----NV 674
Query: 890 LIVDDNNVNLKVAAAGL-KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+ VDDN NLK+ + L R C+ G++A E H FD FMDIQMP +DG
Sbjct: 675 MAVDDNPANLKLISVMLADRTNHVTTCI-NGQQAVE-QAKNHHFDLIFMDIQMPVLDG 730
>gi|365971880|ref|YP_004953441.1| Signal transduction histidine-protein kinase BarA [Enterobacter
cloacae EcWSU1]
gi|365750793|gb|AEW75020.1| Signal transduction histidine-protein kinase BarA [Enterobacter
cloacae EcWSU1]
Length = 919
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 163/527 (30%), Positives = 255/527 (48%), Gaps = 90/527 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + +EL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRSISNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + + N +
Sbjct: 475 ISRRHGGTGLGLVITQKLVKEMGGDISFHSQPNRGSTFWF--------HINLDLNPNVLT 526
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS-------QIA 779
+ P V++ +GM+ V+P A+ + + ++V + S L+ +
Sbjct: 527 DGP--VTNCLKGMRLAYVEPNAAAAQCTLDILSTTPLEV-IYSPTFSALTVEHYDILLLG 583
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
+ ++QE K S++ L L C Q L N DG
Sbjct: 584 VPVTFTGELTMQQERLAKAASMTDYL---LLALPCHAQINAEELKN-----------DGA 629
Query: 840 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 899
+ + ++KPL ++ L +L + LP + L ++ VDDN NL
Sbjct: 630 A--ACLLKPLTATRLLPALTEYCRLSQHA------LPLIDDEQ-KLPMSVMAVDDNPANL 680
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K+ L+ V G +A E QFD MDIQMP MDG
Sbjct: 681 KLIGVLLEDQVQHVELCTSGAQAVE-HAKQMQFDLILMDIQMPGMDG 726
>gi|343503697|ref|ZP_08741506.1| hybrid sensory histidine kinase BarA [Vibrio ichthyoenteri ATCC
700023]
gi|342814289|gb|EGU49236.1| hybrid sensory histidine kinase BarA [Vibrio ichthyoenteri ATCC
700023]
Length = 929
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 174/598 (29%), Positives = 280/598 (46%), Gaps = 97/598 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 208 NMVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 267
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 268 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTKLSNSQTDY 327
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + L++V+SL + + +KG+E+
Sbjct: 328 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQETLEEVVSLQATSAHEKGLEI 387
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I +VP L+GDP R +Q++TNL+GNSIKFTE+G+I ++V L + D +E++
Sbjct: 388 TLKIDPKVPIGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVELRSQKEDVVELQ---- 443
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
V DTG GI Q+
Sbjct: 444 --------------------------------------------FMVRDTGIGISERQQA 459
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV +M GEI S + GSTF FT
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRL---- 515
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKA---LVVDPRPIRAKVSRYHIQRLGIQVEVVS-- 769
+ P S E Q + L+V+P A ++R + + G+ V S
Sbjct: 516 ---------HATDMPMSELIEVQALNQRSLLLVEPNMQAASITRQTLAQQGLVVTYRSSM 566
Query: 770 -DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS 828
D+++ + ++N+ + VS + + L C + + S +
Sbjct: 567 PDEIETFDYV-----LLNL------APNRSNEVSKVEKQVEKALLCA--PHVVVGTPSTA 613
Query: 829 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK 888
+ ++ I + KPL L +L N+ ++ E+ + + L
Sbjct: 614 LALSDHLIQKYQI-HCVTKPLSRKKLLQTL-----AANQESLPEIEV-ELPISTETLPLT 666
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ V+ GK A + H FD MDIQMP MDG
Sbjct: 667 VMAVDDNPANLKLIGALLEERVERVITCTNGKDAVKQAEQRH-FDIILMDIQMPHMDG 723
>gi|423121876|ref|ZP_17109560.1| signal transduction histidine-protein kinase BarA [Klebsiella
oxytoca 10-5246]
gi|376393489|gb|EHT06146.1| signal transduction histidine-protein kinase BarA [Klebsiella
oxytoca 10-5246]
Length = 917
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 165/526 (31%), Positives = 254/526 (48%), Gaps = 89/526 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNTTQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRNALDEVVTLLAHSAHDKGLELTLNIKNDVPDNI 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I V V S+++E ++ +T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTEHGNIDVLVEQRALSNTSVQIEIQI---HDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521
Query: 727 NQPNSVSSE-----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN+V G ++ A+ + + L ++V V S L +
Sbjct: 522 --PNAVQESPLTHCLAGKTLAYIEANAAAAQCTMELLTTLPLEV-VYSPTFSALPEAH-- 576
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT-STDGVS 840
+++L V +D S +NL K C L L + A T DGV+
Sbjct: 577 ---YDILLAGLPVSMRDLSQQK---DNLAK-ACAMADHLLLALPCHAQINAETLKQDGVA 629
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
+ ++KPL ++ L +L + + + + + + ++ VDDN NLK
Sbjct: 630 --ACLLKPLTATRLIPALTASCRTRTPIVLPHSDSSKLPM-------TVMAVDDNPANLK 680
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+ L V + G++A E Q D MDIQMP+MDG
Sbjct: 681 LIGVLLDDLVQHVTLCDSGQRAVE-QAKEMQLDLILMDIQMPDMDG 725
>gi|251786060|ref|YP_003000364.1| BarA sensory histidine kinase [Escherichia coli BL21(DE3)]
gi|253772363|ref|YP_003035194.1| hybrid sensory histidine kinase BarA [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162712|ref|YP_003045820.1| hybrid sensory histidine kinase BarA [Escherichia coli B str.
REL606]
gi|254289471|ref|YP_003055219.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli BL21(DE3)]
gi|242378333|emb|CAQ33110.1| BarA sensory histidine kinase [Escherichia coli BL21(DE3)]
gi|253323407|gb|ACT28009.1| Hpt sensor hybrid histidine kinase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974613|gb|ACT40284.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli B str. REL606]
gi|253978778|gb|ACT44448.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli BL21(DE3)]
Length = 918
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 251/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP+ L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPATDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|86609102|ref|YP_477864.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557644|gb|ABD02601.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 1442
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 183/562 (32%), Positives = 276/562 (49%), Gaps = 96/562 (17%)
Query: 399 ASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGM 458
ASL G +F A I + M K+ AEAA AKS+FLAT+SHEIRTP+N +LGM
Sbjct: 778 ASLAGSLFYAAGRDITVAKLAEEQMKAAKEAAEAASRAKSEFLATISHEIRTPINAILGM 837
Query: 459 LDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDD 518
+L+DT LD QQD+V+T + G+ L++LIN++LD +K+ES KLELE + F+L ++++
Sbjct: 838 TSLLLDTSLDPQQQDWVQTIRYGGEVLLNLINDILDFSKIESQKLELEEIPFSLPQLVEE 897
Query: 519 VLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVY 578
+L L + ++Q K +EL ++ +P TLIGDP R RQI+ NL+ N+IKFT +G + VTV
Sbjct: 898 LLDLMAAQAQSKDLELVAWVDPSLPPTLIGDPNRLRQILANLLSNAIKFTPQGEVVVTV- 956
Query: 579 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLI 638
+ G P K +N
Sbjct: 957 -----------------------------------------EAGERDPEKQ----WVN-- 969
Query: 639 VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 698
V V DTG GIP E R+F PF QV SISR GGTG+GL+IS+ L M G IG S P
Sbjct: 970 VQVRDTGIGIPPEKLDRLFKPFSQVDSSISRQFGGTGLGLAISQRLCQLMGGAIGVESQP 1029
Query: 699 NIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ--PNSVSSE-FQGMKALVVDPRPIRAKVSR 755
G GS+ ++ + + P + G + L+V+ + ++
Sbjct: 1030 ------------GQGSTFRFRIPLKRPDQELLPTAAPDPCLAGKRVLLVEDNASQRQLLS 1077
Query: 756 YHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815
+ G++V + + + + S ++ L++ + +D NLRK
Sbjct: 1078 RLLSAWGMEVTCCALAAEAQAAARTHS--FDLALLDATLPGQD---GLTLAANLRKA--- 1129
Query: 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG-VGNKGNIRN-- 872
Q +L L + + R ST +P+ + KP+++S L L +G VG K
Sbjct: 1130 -QPRLLPL---VLTGRNFIST-ADPLPT-LAKPVKASQLRKLL---LGLVGEKAPSSLSS 1180
Query: 873 --------WELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATE 924
W+ +++ R+ L +IL+ +DN VN KV L+R G V G +A +
Sbjct: 1181 SPAAPPSIWDA-TLASRYPL---QILVAEDNPVNQKVIRLMLERLGYRPDIVGNGLEAVQ 1236
Query: 925 LLMPPHQFDACFMDIQMPEMDG 946
L +D MD+QMPE+DG
Sbjct: 1237 ALR-LRPYDLVLMDMQMPELDG 1257
>gi|452966289|gb|EME71301.1| Signal transduction histidine kinase [Magnetospirillum sp. SO-1]
Length = 1187
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 160/542 (29%), Positives = 252/542 (46%), Gaps = 98/542 (18%)
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489
AE A AKS FLAT+SHEIRTPMNGVL M +L D L Q++ R + S +L+++I
Sbjct: 523 AEEASQAKSLFLATMSHEIRTPMNGVLTMAHLLEDMPLPAEQREMARVIRDSATSLLTII 582
Query: 490 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 549
N++LD +K+E+GKL+LE V ++ +++ V L + ++Q+KG+ L ++ + + ++GD
Sbjct: 583 NDILDFSKIEAGKLQLELVELSVSELVEGVADLLTIRAQEKGISLITFVEPALADRVVGD 642
Query: 550 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 609
P R RQIITNL GN+IKFT+KG++ ++ +
Sbjct: 643 PIRLRQIITNLAGNAIKFTDKGYVRISARAM----------------------------- 673
Query: 610 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669
D P + L ++ DTG G+ E Q+R+F PFMQ +ISR
Sbjct: 674 -----------DPRERPLR--------LEFAITDTGIGLDAEQQARLFEPFMQADVTISR 714
Query: 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 729
+GGTG+GLSI + LV M+G+IG S GSTF F Q+ +P
Sbjct: 715 RYGGTGLGLSICRRLVAMMEGDIGVRSNIGQGSTFWF-----------------QVPLEP 757
Query: 730 NSVSSE----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII 785
+E G+ LV+ P+ A+ R ++ LG QV VV + + +
Sbjct: 758 VEAEAEAGPDLSGIAVLVLAEGPVAAECLRQYLGHLGAQVAVV---------VGAEGAVA 808
Query: 786 NMILVEQEVWEKDTSVSTLFVNNLRKLGCG----------FQSKLFLLANSISSSRANTS 835
+ W D ++ + ++G + K+ +L + + + +
Sbjct: 809 AVRAAALAGWTYDVALLDGGQDFRMRMGVAGALVTAAGPDLELKVAMLVSQDAFAAVSAE 868
Query: 836 TDGVSIPSVIMKPLRSSML----AASLQRAMGVGN----KGNIRNWELPSMSLRHLLLGR 887
+ + + KP+R L AA++ RA + +G W+ P G
Sbjct: 869 VKAAGLYAALPKPVRRRQLWRSVAAAVGRASAEADTAEGEGIEEGWK-PPAMEEAAAAGA 927
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
IL+ +DN N V ++R G A+ V G +A E M + D MPEMDGY
Sbjct: 928 LILVAEDNPTNKVVIRHLMERLGYAIEVVGNGAEAWE-RMQIRDYGLLLTDCHMPEMDGY 986
Query: 948 EM 949
E+
Sbjct: 987 EL 988
>gi|220908073|ref|YP_002483384.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
gi|219864684|gb|ACL45023.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
Length = 1305
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 171/538 (31%), Positives = 244/538 (45%), Gaps = 79/538 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K AE A+ AKS FLA VSHEIRTPMN V+GM +L+DT L Q DYV T + S L+
Sbjct: 609 KHAAEVANAAKSNFLAIVSHEIRTPMNAVIGMSGLLLDTCLTPEQFDYVETIRNSSDTLL 668
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+ESGKLELE F+LR +++ L L + ++ KG++L +I +P +
Sbjct: 669 TIINDILDFSKIESGKLELEEQPFDLRICIEEALDLLAPQAASKGLDLVYFIDPHLPTQI 728
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGD R RQI+ NL+ N++KFT G + ++V L YP
Sbjct: 729 IGDITRLRQILWNLLSNAVKFTAMGEVVISV------------------QGRELEFYP-- 768
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
PF S+ + +V+DTG GI E R+F PF Q S
Sbjct: 769 -------------------PFIST----YEIQFAVQDTGVGIAREQMERLFKPFSQGDAS 805
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
++R +GGTG+GL+ISK L M+G + S GSTF FT + S S
Sbjct: 806 MTRRYGGTGLGLAISKRLSELMRGRMWVASQEGKGSTFYFTVIVQVDQSAS--------- 856
Query: 727 NQPNSVS-SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII 785
Q ++ E Q L+ + +Q LG+QV+ L ++ +
Sbjct: 857 -QAAAIPLPELQDKSVLLFSGNASLRRSLTLQMQGLGLQVQTADGVGTVLHELHRQNHFD 915
Query: 786 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL---LANSISSSRANTSTDGVSIP 842
IL D + L G L + ++ S
Sbjct: 916 LAIL--------DIDLPGFQPAQLASQIHGIPDHCCLPLVMLSAKGKSALEIKQVSTEFS 967
Query: 843 SVIMKPLRSSMLAASL----QRAMGVGNKGNIRNW-ELP-------SMSLRHLLLGRKIL 890
+ + KP+R L +L Q + K I ++ LP +SL L R IL
Sbjct: 968 AFLNKPVRHYQLTNTLIQIVQGGYTIDPKATIPSFSRLPITIPPESEVSLAQTLPLR-IL 1026
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+V+D VN K+A L+R G G +A E L +D FMD+QMPEMDG E
Sbjct: 1027 LVEDIAVNQKIALQLLQRLGYRADVANNGLEALEALQ-RQVYDVIFMDVQMPEMDGLE 1083
>gi|333899683|ref|YP_004473556.1| multi-sensor hybrid histidine kinase [Pseudomonas fulva 12-X]
gi|333114948|gb|AEF21462.1| multi-sensor hybrid histidine kinase [Pseudomonas fulva 12-X]
Length = 917
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 171/554 (30%), Positives = 258/554 (46%), Gaps = 96/554 (17%)
Query: 413 IAKVEEDYHGMME-----------LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDM 461
I +V ED ME +K+A A KS+FLA +SHEIRTP+NG+LG ++
Sbjct: 252 IDQVTEDLRQNMENMEVQNIELDFARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNL 311
Query: 462 LMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLS 521
L +EL QQDY+ T + S +L+S+INEVLD +K+E+GKL LE + FNLR +L D L+
Sbjct: 312 LQKSELSPRQQDYLSTIEQSAGSLLSIINEVLDFSKIEAGKLVLENIPFNLRDLLQDTLT 371
Query: 522 LFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 581
+ + + +K +EL + P L GDP R +Q++TNL+ N+IKFT +G I + L +
Sbjct: 372 ILAPTAHEKKLELLSLVYRDTPVWLSGDPLRLKQVLTNLVSNAIKFTREGSIVIRAMLED 431
Query: 582 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSV 641
E ADR L +SV
Sbjct: 432 E----------------------TADRAQ--------------------------LRISV 443
Query: 642 EDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 701
DTG G+ E +F F Q S++R GGTG+GL ISK L+ +M GEIG S P G
Sbjct: 444 RDTGIGLADEDLRALFQAFSQADNSMTRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEG 503
Query: 702 STFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRL 761
S F S ++E QP +++ G + +++ R + + ++ ++
Sbjct: 504 SEFWININLPKARSEADE--------QPRALA----GRRVAMLEGRDLARQALQHQLEDC 551
Query: 762 GIQVEVVSD---QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL--FVNNLRKLGCGF 816
G+QV +D ++Q A ++ + ++ + D + + L + +L +LGC
Sbjct: 552 GLQVSEFTDIDSLCAAVTQAAGSAQAFSCAVL--GITSDDLAPAALGKRIWDLEELGC-- 607
Query: 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELP 876
K +L + + S+P + LQRA+ ++ P
Sbjct: 608 --KSVVLCPTTEQTLYQD-----SVPDWHSQLQAKPACTRRLQRAL-----IDLVAPRQP 655
Query: 877 SMSLRHLLLGRK--ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 934
+ RH LGR IL VDDN NL + L GA V G A ++ FD
Sbjct: 656 RQATRH-NLGRSPAILCVDDNAANLLLVQTLLDDMGAKVTVASSGFDAL-VITQEQDFDL 713
Query: 935 CFMDIQMPEMDGYE 948
FMD+QMP MDG +
Sbjct: 714 VFMDVQMPGMDGRQ 727
>gi|421152710|ref|ZP_15612287.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
14886]
gi|404524906|gb|EKA35200.1| sensor/response regulator hybrid [Pseudomonas aeruginosa ATCC
14886]
Length = 918
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 167/551 (30%), Positives = 257/551 (46%), Gaps = 92/551 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + ++A + AKS+FLA +SHEIRTP+NGVLGML +L DT LD
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q YV T +SG AL+S+IN++LD A++ESGKL LE + F+L +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L + + VP L GDP R RQ++ NL+ N++KFT +GH+ V V
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ F++ G L+ SV D+G GI
Sbjct: 550 --------------------------RRFDEGGRE-----------RLLYSVSDSGIGIS 572
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+AQ +F F Q S +R +GG+G+GL+IS+ LV M G I S P G+ F+
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632
Query: 710 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +Q + ++P ++SE L +D + ++R G++VE
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679
Query: 769 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 822
+CL + + + +LV W S+ TL+ Q + L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728
Query: 823 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L + + +G+ + + V +K LR ++L +R G E
Sbjct: 729 LLCPLQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDE---- 784
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFM 937
L IL+ +DN VN V L + G AV G+ A E L P+ M
Sbjct: 785 ----RLDAPCILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840
Query: 938 DIQMPEMDGYE 948
D +MPEMDG+E
Sbjct: 841 DGEMPEMDGFE 851
>gi|390952192|ref|YP_006415951.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390428761|gb|AFL75826.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 1158
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 157/522 (30%), Positives = 255/522 (48%), Gaps = 59/522 (11%)
Query: 430 AEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489
A AA+ AKS FLA +SHEIRTP+N V+G+ D+L+ T LD Q+DY+ + S +AL+++I
Sbjct: 409 ARAANEAKSGFLANMSHEIRTPLNAVMGLTDLLLRTRLDARQRDYLAKVKISARALLAVI 468
Query: 490 NEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD 549
N++LD +K+E+G+LELE +F+L +L ++ +F+ ++ ++ +EL V +D VP L+GD
Sbjct: 469 NDILDFSKIEAGRLELEHAAFSLDEVLANLTEMFAYRAHERDIELIVSAADSVPRALVGD 528
Query: 550 PGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRC 609
P R QI+ NL GN+IKFTE+G + VTV +E P AD
Sbjct: 529 PTRLGQILINLTGNAIKFTERGEVAVTVTRIEP---------------------PSAD-- 565
Query: 610 HSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669
P D + L +V DTG GIP IF F Q SI+R
Sbjct: 566 ----------------PID----DQVTLCFTVRDTGPGIPENRLEAIFQSFSQADGSITR 605
Query: 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQP 729
HGGTG+GL+I++ L M G I S GS F T V T +H ++
Sbjct: 606 LHGGTGLGLAIARQLAELMGGGIRVESQVGKGSCFRATVVLSRQLETDEQHPVTPID--- 662
Query: 730 NSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMIL 789
+G++ LVV+ + IQ + V+ + L ++++ +I +++L
Sbjct: 663 ------LRGLRVLVVEDNATSRDILISQIQSFQMAATAVASGEEALERLSAPDQIFDLVL 716
Query: 790 VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL 849
++ ++ + +T + KL ++ + + + + + + + + KP+
Sbjct: 717 MDWKMPGLNGLETTRRIRADLKLD---KTPVICMISGYAREDLMRPAERAVLDAFLHKPV 773
Query: 850 RSSMLAASLQRAMG---VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 906
S L ++ G G++ ++ G+++L+V+D +N VA L
Sbjct: 774 NQSFLFDTIMGLFGHQEAAIAGDLMRPTADTLDTPPDFTGQRVLLVEDIEINRLVAMEWL 833
Query: 907 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
G V E G +A E L P + A MD+QMP MDG E
Sbjct: 834 ASVGLEVDIAENGAEAIERL-DPARHAAVLMDLQMPVMDGLE 874
>gi|146306761|ref|YP_001187226.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
gi|145574962|gb|ABP84494.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
Length = 916
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 164/533 (30%), Positives = 249/533 (46%), Gaps = 91/533 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+K+A A KS+FLA +SHEIRTP+NG+LG ++L +EL QQDY+ T + S +L+
Sbjct: 274 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLATIEKSADSLL 333
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+INEVLD +K+E+GKL LE++ FNLR +L D L++ + + +K +EL I P L
Sbjct: 334 GIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELISLIYRDTPLAL 393
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R +Q++TNL+ N+IKFT +G I + + +E VDS +
Sbjct: 394 RGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESVDSAQ------------------ 435
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
L +SV DTG G+ E +F F Q S
Sbjct: 436 ------------------------------LRISVMDTGIGLSDEDLRALFQAFSQADNS 465
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+SR GGTG+GL ISK L+ +M GEIG S P GS F + +++ +
Sbjct: 466 LSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLSLPKARDDADD-----LP 520
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV---VSDQLQCLSQIASGSK 783
P QG + V++ + + + ++ G++VE + L+ +SQ +
Sbjct: 521 RAP------LQGRRVAVLESHELARQALTHQLEDCGLEVESFAGLQPLLEAVSQQHQHER 574
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS-----SSRANTSTDG 838
+++ ++ + + +L +LGC K +L + S + T
Sbjct: 575 PLSLAVLGITAEQLPPEALAQHIWDLDRLGC----KTLVLCPTTELGLFHESLPDAYTQL 630
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRK--ILIVDDNN 896
+ P K ++ + QRA G PS + GR+ IL VDDN
Sbjct: 631 QAKPPCTRKLHKALVEMVCPQRAPGE-----------PSAPVN----GRRPQILCVDDNP 675
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QFDACFMDIQMPEMDGYE 948
NL + L GA V V+ G A E + H FD FMD+QMP MDG +
Sbjct: 676 ANLLLVQTLLDDLGAQVTAVDSGFAAIEAVQ--HGSFDLVFMDVQMPGMDGRQ 726
>gi|259415156|ref|ZP_05739078.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp.
TrichCH4B]
gi|259349066|gb|EEW60820.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp.
TrichCH4B]
Length = 770
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 156/542 (28%), Positives = 262/542 (48%), Gaps = 77/542 (14%)
Query: 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQD 473
A+ +E + +++AE A AKS+FLA +SHEIRTPMNGV+GM ++L +T+L Q+
Sbjct: 225 AERDEREQALERAREQAEIASRAKSEFLANMSHEIRTPMNGVIGMAEVLRETKLTPDQEM 284
Query: 474 YVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVE 533
Y T SG AL+++IN++L+ +K+E+GKLEL +FNLR +++DV+ L + K+ +K V+
Sbjct: 285 YTDTIVKSGNALLTIINDILNFSKIEAGKLELTQATFNLRTVVEDVVMLLAPKAAEKWVQ 344
Query: 534 LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETEL 593
L + + E GD GR RQIITN++GN++KFT +G + + V
Sbjct: 345 LTLRYDPDLVEFYDGDAGRIRQIITNVVGNAVKFTSQGSVHIDVT--------------- 389
Query: 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ 653
+S ++L +SV DTG GIP E
Sbjct: 390 ----------------------------------GTSRGKEMDLRISVVDTGIGIPAEKL 415
Query: 654 SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713
RIF F QV + +R+ GTG+GL+IS L+ MKG I S GS FT
Sbjct: 416 DRIFHAFEQVDGAATRSFEGTGLGLAISTRLLQLMKGRIHVTSSEGKGSVFTIDITL--- 472
Query: 714 SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
TS+ + QP G+ AL+VD + ++ ++ G++V + ++
Sbjct: 473 -PTSDRAPVAFLPEQP------VAGLHALIVDDLELNRRILGERLRSWGLRVTEAASAME 525
Query: 774 C---LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL-FLLANSISS 829
L ++ + +++ ++ + + D + LR G +++ ++ +S+
Sbjct: 526 AMLHLDEMRDATDTCDLLFLDFNMPDCDG-----YELALRIRGLPNAARVPIIVISSVDP 580
Query: 830 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWE---LPSMSLRHLLLG 886
+ + + + ++KP+R+ L + +A+G GN R+ P + R
Sbjct: 581 ALSQSMLADIGSCHQVLKPVRADQLRVVISQALGGEASGNSRDRSDAGSPKLGKRI---- 636
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K+L+ +DN N V LK + G++A E+ + + D MD+ MP MDG
Sbjct: 637 -KLLMAEDNRTNQVVVTRMLKSENVDITIAANGQEAVEMYL-RDEPDLILMDMMMPVMDG 694
Query: 947 YE 948
E
Sbjct: 695 LE 696
>gi|423125482|ref|ZP_17113161.1| signal transduction histidine-protein kinase BarA [Klebsiella
oxytoca 10-5250]
gi|376399088|gb|EHT11709.1| signal transduction histidine-protein kinase BarA [Klebsiella
oxytoca 10-5250]
Length = 917
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 172/530 (32%), Positives = 260/530 (49%), Gaps = 97/530 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNTTQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS---IEVETELSSSKNTLSGY 603
IGDP R +QIITNLMGN+IKFTE G+I V LVE+ S +++E ++ +T G
Sbjct: 403 IGDPLRLQQIITNLMGNAIKFTEHGNIDV---LVEQRAISNSRVQIEVQI---HDTGIGI 456
Query: 604 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663
P D+ ++ F+ Q
Sbjct: 457 PERDQSRLFQAFR---------------------------------------------QA 471
Query: 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ 723
SISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S
Sbjct: 472 DASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISL 518
Query: 724 QMNNQ--PNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 780
+N P+SV ++ G K ++ A+ + + ++V V S + L
Sbjct: 519 DLNPNAVPDSVPTQCLAGKKLAYIEANAAAAQSTMELLATTPLEV-VYSPTMTALPDAH- 576
Query: 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANT-STDGV 839
+++L V +D S + L + C L L + A T DG+
Sbjct: 577 ----YDILLAGIPVSIRDLSQHR---DKLAR-ACKLADHLVLALPCHAQVSAETLRQDGI 628
Query: 840 SIPSVIMKPLRSSMLAASLQ---RAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 896
+ + ++KPL S+ L +L +A + +LP ++ VDDN
Sbjct: 629 A--ACLLKPLTSTRLLPALTASCQAQPTTLPPRADSKKLPM----------TVMAVDDNP 676
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L+ V+ + G+ A E Q D MDIQMPEMDG
Sbjct: 677 ANLKLIGALLEDLVQHVILCDSGQHAVEQARETQQ-DLILMDIQMPEMDG 725
>gi|417228679|ref|ZP_12030437.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5.0959]
gi|386208014|gb|EII12519.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5.0959]
Length = 918
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESQLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|295134137|ref|YP_003584813.1| two-component system sensor histidine kinase/response regulator
hybrid [Zunongwangia profunda SM-A87]
gi|294982152|gb|ADF52617.1| two-component system sensor histidine kinase/response regulator
hybrid [Zunongwangia profunda SM-A87]
Length = 1567
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 168/551 (30%), Positives = 264/551 (47%), Gaps = 76/551 (13%)
Query: 405 IFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 464
I AT+ I + +E + ++E K KAEAA +KS+FLA +SHEIRTP+NGV+G D+LM
Sbjct: 908 IILATIQDITRRKEMENSLVEAKLKAEAASKSKSEFLANMSHEIRTPLNGVIGFTDLLMK 967
Query: 465 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 524
TEL+ +Q+ Y+ T S L+ LIN++LD +K+E+GKLEL N+ + + +
Sbjct: 968 TELNTSQKQYMETVYNSANTLLDLINDILDFSKIEAGKLELSVEKINIIELCGQTIDVVK 1027
Query: 525 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 584
K+ +KG+E+ + IS +V + GD R RQI+TNL+GN++KFT KG
Sbjct: 1028 HKAHEKGLEVLLNISQKVDRYIYGDSVRIRQILTNLLGNAVKFTNKGE------------ 1075
Query: 585 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644
IE+ E + +KNT R +++ V DT
Sbjct: 1076 --IELRIE-AGNKNT-----EHQREYTF---------------------------IVRDT 1100
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GI + RIF F Q S +R +GGTG+GL+IS L+ M ++ S P IGS+F
Sbjct: 1101 GIGIAPQNLERIFKAFDQEDSSTTRKYGGTGLGLTISNKLLYLMNSKLDVQSEPGIGSSF 1160
Query: 705 TFTAVFGN--GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLG 762
+F F + G+S +E++S+ N L++D + + +
Sbjct: 1161 SFKVYFESEEGASFLDENSSKITN--------------VLIIDDNYNNQVILKEMLAIED 1206
Query: 763 IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLR---KLGCGFQSK 819
IQ S+ ++ L+ + + +V+ + F+ +LR KL Q
Sbjct: 1207 IQCHAASNAIEALN-LLEKENTYQLAIVD---YNMPYMTGIDFIAHLRNDLKLDAE-QLP 1261
Query: 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS 879
L LL +S + + + + + I KP++ L L + + KG + +
Sbjct: 1262 LILLHSSAQEEKLAKACEDLDVQFNINKPIKIDQLYRMLNQ-IQAPFKG-VEEKPVDEFK 1319
Query: 880 LRHLLLGRKILIVDDNNVNLKVAAAGLKRY--GAAVVCVERGKKATELLMPPHQFDACFM 937
+ ++LI +DN VN +A L + A +V VE G+ A H D FM
Sbjct: 1320 EKTFDDNFRVLIAEDNPVNKFLAKTILTKAVPNAEIVEVENGQDAVS-FYKEHPLDIIFM 1378
Query: 938 DIQMPEMDGYE 948
DIQMP M G+E
Sbjct: 1379 DIQMPIMSGFE 1389
>gi|119493069|ref|ZP_01623994.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
gi|119452814|gb|EAW33989.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
Length = 1727
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 176/606 (29%), Positives = 288/606 (47%), Gaps = 103/606 (16%)
Query: 398 IASLVG-HIFQAT-----VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTP 451
+AS VG +FQA V ++ + + E + AE A AKS+FLAT+SHEIRTP
Sbjct: 942 VASQVGLTLFQAKLLEFEVKSRQQLADKNKALEEARLAAEIASRAKSEFLATMSHEIRTP 1001
Query: 452 MNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFN 511
MN V+GM +L+D L+ Q+D+V T + SG AL+++IN++LD +K+ESGKLELE F
Sbjct: 1002 MNAVIGMTGLLLDMNLNPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEHQPFK 1061
Query: 512 LRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG 571
LR +++ L L S ++ +KG+ELA + PE ++GD R RQ++ NL+ N++KFT +G
Sbjct: 1062 LRTCIEESLDLLSARASEKGLELAYIVDPNTPEVMVGDVTRLRQVLVNLLSNAVKFTNQG 1121
Query: 572 HIFVTVY--LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKS 629
+ V+V L+++ S+ E + S+ ++S P+ +
Sbjct: 1122 EVIVSVTSSLIQDSAQSLISSEEKNESQPSISP-PIYE---------------------- 1158
Query: 630 SSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMK 689
+ +V+DTG GIP + R+F F QV S +R +GGTG+GL+IS+ L M
Sbjct: 1159 -------VQFAVKDTGIGIPPDRMHRLFKAFSQVDASTTRQYGGTGLGLAISQRLSEMMG 1211
Query: 690 GEIGFVS---------------------------IPNI---GSTFTFTAVFGNGSSTSNE 719
G++ VS IP + GS F FT ++ ++
Sbjct: 1212 GKMWVVSWVKPLEESSNSQSLISSITGNPPPSFDIPRLDITGSIFYFTINSSAIETSLSD 1271
Query: 720 HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQLQCLS 776
+ Q+ F G + L+V+ I V ++ G++ V D L+C+
Sbjct: 1272 EFADQL----------FTGKQILIVENHGINQTVITRQVKAWGMKPLVAKTGIDALKCIQ 1321
Query: 777 QIASGSKIINMILVEQEVWEKD----TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR- 831
+ + I+++++ + + D L +L + Q +L N S++
Sbjct: 1322 ENPN----IDLVIIGINLPDIDEIELARKIRLLEKDLSRNHPDRQPVHLVLFNYASNTNI 1377
Query: 832 -ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNK--GNIRNWELPSMS------LRH 882
++ + KPL+ S +L + GN+ + + +L S H
Sbjct: 1378 VKRIERTNINCAGFVNKPLKQSQFYNTLVQIFA-GNEIIEHSSSLKLTDESGPLNPPQNH 1436
Query: 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
L +IL+ +DN N KVA L+R G G + + L +D MD+QMP
Sbjct: 1437 AAL--RILLAEDNVTNQKVATKLLQRLGYRADIAGNGVEVLDALK-RQPYDVVLMDVQMP 1493
Query: 943 EMDGYE 948
+MDG E
Sbjct: 1494 QMDGLE 1499
>gi|86608001|ref|YP_476763.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556543|gb|ABD01500.1| sensory box histidine kinase/response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 1526
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 157/527 (29%), Positives = 247/527 (46%), Gaps = 82/527 (15%)
Query: 438 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497
S FLAT+SHEIRTPMN VLGM +L++T L+ Q+D+V T + SG AL++LIN++LD +K
Sbjct: 850 SSFLATMSHEIRTPMNAVLGMTGLLLETPLNAEQRDFVETIRISGDALLTLINDILDFSK 909
Query: 498 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQII 557
+E+G++ELE + F+LR+ L++V LF+ + KG+ELAV + VP L GD R RQI+
Sbjct: 910 LEAGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLMPPEVPRYLRGDASRLRQIL 969
Query: 558 TNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKT 617
NL+ N+IKFT +G + + +++E ++ S ++T G P A + K F+
Sbjct: 970 NNLVSNAIKFTHQGEVVIQAEVLQETATHAHLKL---SVRDTGIGIPAAAQS---KLFQP 1023
Query: 618 FNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIG 677
F+ QV S +R +GGTG+G
Sbjct: 1024 FS------------------------------------------QVDASTTRKYGGTGLG 1041
Query: 678 LSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 737
L+I K L M G I S GSTF+ + QQ++ + + Q
Sbjct: 1042 LAICKQLTELMGGTISLQSQEGQGSTFSVELTL------ERQPYVQQLSQPSARIPVDLQ 1095
Query: 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC---LSQIASGSKIINMILVEQEV 794
G + L VD K+ R G+ VE + Q L Q + + +++ ++
Sbjct: 1096 GKRLLAVDDNATNRKILRCQATTWGMVVEEAENAYQAMDKLRQAVREGRPFPLAVLDMQM 1155
Query: 795 WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSML 854
E D ++ +L +++L ++ S+ + + + ++KP++ S L
Sbjct: 1156 PEVDGETLGRWIKADPQLA---ETQLVMM-TSLGLGEHSRRAAEIGFAAYLVKPVKQSRL 1211
Query: 855 AASLQRAMGVGN-------------KGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+L A+G + + P SLR IL+ +DN VN KV
Sbjct: 1212 QEALVMALGKSSGLSTSLLGMSPVLPQTTPREDRPRQSLR-------ILLAEDNPVNQKV 1264
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
A L+ G V G++ +LL +D MD QMP MDGYE
Sbjct: 1265 ALRQLESLGYKADVVANGQEVLDLLQKVS-YDLILMDCQMPVMDGYE 1310
>gi|119356453|ref|YP_911097.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
266]
gi|119353802|gb|ABL64673.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
266]
Length = 1398
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 169/545 (31%), Positives = 260/545 (47%), Gaps = 89/545 (16%)
Query: 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQAS 481
+++ + AE+A+ AKS+FLA +SHEIRTPMNGV+GM ++L+DT+L Q+D+ AS
Sbjct: 853 ALVDARYAAESANRAKSEFLANMSHEIRTPMNGVIGMANLLLDTDLSDEQRDFADMLLAS 912
Query: 482 GKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDR 541
G++L+++IN++LD +K+E+GKLELE + F+LR +L+ ++ K+ +K +E +S
Sbjct: 913 GESLLTVINDILDFSKIEAGKLELEHIVFDLRKLLESFGAVMGLKAVEKNLEFNCVVSPE 972
Query: 542 VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
VP GDPGR RQI+ NL GN+IKFT+ G++ V V + E + S K+T
Sbjct: 973 VPVFFKGDPGRIRQILNNLAGNAIKFTQNGNVTVAVSMQSENNGDAVLRF---SVKDTGI 1029
Query: 602 GYPVA--DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659
G P A DR FK+F
Sbjct: 1030 GIPEAKLDRL-----FKSFT---------------------------------------- 1044
Query: 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNE 719
QV S +R +GGTG+GL+IS+ LV M G+IG +S GS F FT S
Sbjct: 1045 --QVDASTTRKYGGTGLGLAISRQLVELMGGKIGVISHEGNGSEFWFTIFLKKQPFYST- 1101
Query: 720 HNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA 779
+ QP +S F G++ALVVD K+ + + L I+V S L ++
Sbjct: 1102 -----IETQP---TSAFAGIRALVVDDNAANRKMLKALLSSLDIRVTEASGGDAALGELR 1153
Query: 780 SGSK--------IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
S K II+M + + + + ++ + LR S + L R
Sbjct: 1154 SAFKSGDPFALAIIDMQMPDMDGFMLGQTIKEDLL--LRNTELFLMSPVGTLNQREEYHR 1211
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAM-GVGNKGNIRNWEL---------PSMSLR 881
A S + + KP+ L A++ + + N+ RN + P M
Sbjct: 1212 AGFSAN-------LSKPVGQLELVAAINKVVFNHDNQSGSRNPSISYPVTEEGEPPMVPV 1264
Query: 882 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 941
L +IL+ +D+ VN V L ++G V V G++ ++L +D MD+QM
Sbjct: 1265 GKLEHYRILLAEDSRVNQMVVIGVLTKFGYGVDVVSNGQECVDVLQ-KRTYDLVLMDVQM 1323
Query: 942 PEMDG 946
P MDG
Sbjct: 1324 PVMDG 1328
>gi|300931244|ref|ZP_07146584.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 187-1]
gi|300460898|gb|EFK24391.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 187-1]
Length = 918
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 251/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP+ L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPATDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPPNLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|420337927|ref|ZP_14839489.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri K-315]
gi|391259801|gb|EIQ18875.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri K-315]
Length = 918
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 165/533 (30%), Positives = 252/533 (47%), Gaps = 102/533 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSE----FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 775
+ +PNS +++ L V P + + H R+ + + V +
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDRMLLGIAVTFRE---- 590
Query: 776 SQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTS 835
+ ++ E K S++ + L C Q +
Sbjct: 591 -----------PLTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEKLK 625
Query: 836 TDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
DG+ + ++KPL + L +L + +N LP L + ++ VDDN
Sbjct: 626 QDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVDDN 676
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
NLK+ +A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 677 PANLKLISALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|192359994|ref|YP_001980883.1| MmoS protein [Cellvibrio japonicus Ueda107]
gi|190686159|gb|ACE83837.1| MmoS [Cellvibrio japonicus Ueda107]
Length = 803
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 158/525 (30%), Positives = 242/525 (46%), Gaps = 63/525 (12%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K AE A AKSQFLAT+SHEIRTPMNGV+GMLDML DT LD Q+ Y+ SG+ L+
Sbjct: 268 KNAAEDASRAKSQFLATMSHEIRTPMNGVIGMLDMLRDTPLDENQKHYIDVIHRSGETLL 327
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+GK++LE + F L ++++ + LF + + +EL ++ VP L
Sbjct: 328 SIINDILDYSKIEAGKMQLEEMVFELDDLVENCIQLFGATANKRNIELFGGLNPDVPRRL 387
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R RQII NL+GN+ KFTE+G + + V L D+ ++ E
Sbjct: 388 RGDPTRLRQIIINLLGNAFKFTEEGFVSLEVGL-----DNTALQAE-------------- 428
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+ L V+D+G GI + S +F F Q S
Sbjct: 429 --------------------------GRLMLRFVVQDSGIGIDPNSASNLFDSFNQADAS 462
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GGTG+GL+I K L M G IG S G+ F FTA F + Q++
Sbjct: 463 TTRKYGGTGLGLAICKSLAELMGGRIGVKSAKGEGAQFWFTAQF----------DVQELA 512
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+ + +G + L+V+ ++ + G+ +E Q ++ + G
Sbjct: 513 SPSLTPDPTLKGKRLLMVETSAPLVTFTQRYCDHWGLLLETAFSAKQAVALLKHGLHAGE 572
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
+ + LR + +F+ + ++I +V+
Sbjct: 573 PFDFVAFDYSLPDATGFELAQWLRDAPDFTELPVFMFSGG-DVYHDQAVMQRLAIHTVLR 631
Query: 847 KPLRSSMLAASLQRAMGVGNKGNIRNWE--LPSMSLRHLLLGRKILIVDDNNVNLKVAAA 904
KP+ L L +G + E L HL ++L+ +DN VN V
Sbjct: 632 KPISVKALYRELIALLGHEAAPTVLPAEKVLARDKFAHL----QVLVAEDNPVNRMVIKG 687
Query: 905 GLKRYGAAVVCVERGKKATELLMPPHQ-FDACFMDIQMPEMDGYE 948
L + G V E G++A +L+ Q FD MD +MPEMDG+E
Sbjct: 688 LLGKLGIQPVFAENGREAVDLVHHGAQRFDLILMDCEMPEMDGFE 732
>gi|171317408|ref|ZP_02906601.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
gi|171097425|gb|EDT42266.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
Length = 1242
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 154/531 (29%), Positives = 244/531 (45%), Gaps = 96/531 (18%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
AKS FLA +SHEIRTPMNGVLGM ++L T L Q+ +V T SG+ L+ +I+++LD
Sbjct: 562 AKSDFLARMSHEIRTPMNGVLGMTELLQRTRLTSKQRKFVDTVYRSGQTLLVIIDDILDF 621
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+E+GKL LE + FNL +LDDV++L ++ K +EL +D VP+ + GDP R RQ
Sbjct: 622 SKIEAGKLTLERIDFNLHQLLDDVVALLEPNARRKALELVYRRADSVPQRMRGDPVRLRQ 681
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
I+TNL+GN+IKFTE GH+ ++
Sbjct: 682 ILTNLLGNAIKFTEHGHVGLSA-------------------------------------- 703
Query: 616 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
+++ DG ++ ++ D+G GIP + +++F PF Q S +R +GGTG
Sbjct: 704 -SYSDDG-------------RIVFTIADSGIGIPPDISAQLFRPFQQADSSTARKYGGTG 749
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735
+GL IS+ L M G + S P GS FT T F S P
Sbjct: 750 LGLVISRQLAEMMGGTLTLDSAPGKGSVFTVTTPFEPASGEV---------GVPAHARPS 800
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV---SDQLQCLSQIASGSKIINMILVEQ 792
G++ L+VD V H + V D L L A+ ++ +++
Sbjct: 801 LAGLRVLIVDDSETDRSVLLEHAIEWHLCVATAIGGDDALSQLRAAATDGAPFDLAIIDV 860
Query: 793 EV-----------WEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
+ +D S+ L + L F + +SI + + I
Sbjct: 861 RMPGMDGISLVQHIRRDPSLRALRIITL---------TAFEMMDSIQVAHE------LDI 905
Query: 842 PSVIMKPLRSSMLAASLQRAMGV-----GNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 896
+ + KPL + L ++ A+ V + + + P + + ++L+V+DN
Sbjct: 906 AARLTKPLHGNDLYTAIAAAVHVMPPRLASAAPVSDEAGPGPGMPLDEIAARVLLVEDNA 965
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
VN ++A A L+ V + G++A ++L FD MD QMP +DG+
Sbjct: 966 VNQQIALAMLEDTDYRVAVADDGEQALKML-EQDAFDVVLMDCQMPLLDGF 1015
>gi|288942103|ref|YP_003444343.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
gi|288897475|gb|ADC63311.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
180]
Length = 873
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 197/750 (26%), Positives = 339/750 (45%), Gaps = 136/750 (18%)
Query: 234 QDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPS 293
+D HV +L + G +D E R R + ++L + G + +A+Y R++
Sbjct: 72 EDVQRHVQAL-LTQGYDDFETRHRCRDGSFRHVNVLVQVLPVD--GRRMFYAIY-RDITE 127
Query: 294 NATPNERIEATDGYLGGIFDIE----SLVEKLLHQLASKQTIF---------VNVYDITN 340
+ ER+ ++ F+I +L+ H L Q + + V D +
Sbjct: 128 SRLAEERLRRSEAKFRAAFEIAPHGMALIAPDGHWLQVNQALCRILGYDESELLVRDFQS 187
Query: 341 LSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLL----AISTSIGIL 396
+SHP +++ D ++L ++ + E R +Q P P++ A+ G L
Sbjct: 188 ISHP-----EDLAADLVYLEQLVSGATDRIQFEKRYLHRQGQPIPVMLSVSAVRDEWGRL 242
Query: 397 VIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVL 456
+ +V H+ T + ++ M + + AE A+ AKS+FLA +SHEIRTP+N ++
Sbjct: 243 --SRMVAHVLDLTERKASE-----EAMRQAMETAEVANRAKSEFLANMSHEIRTPLNAII 295
Query: 457 GMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAIL 516
G+ +L+D+ LD Q+DY+ + AL+ ++N+VLD +K+E+G+++L+ V F + A+L
Sbjct: 296 GLGQLLLDSGLDSRQRDYMNKIRQGSDALLRILNDVLDYSKIEAGQIQLDTVDFRIEAVL 355
Query: 517 DDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVT 576
D + +LFS ++ KG+ L ++ R P+ L GDP R Q++ NL+GN++KFTE+G + +
Sbjct: 356 DQLTALFSLAAESKGLALYYHLDPRTPQVLRGDPMRLGQVLNNLVGNAVKFTERGFVELR 415
Query: 577 VYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLIN 636
+ + +D I
Sbjct: 416 I--------------------------------------RALREDQGQ----------IQ 427
Query: 637 LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS 696
L SV DTG G+ + +F F Q SI+R +GGTG+GLSIS+ L M G+I S
Sbjct: 428 LAFSVRDTGIGMDQASIEHLFQSFTQADCSITRRYGGTGLGLSISRQLAQLMGGDIRVRS 487
Query: 697 IPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGM---KALVVDPRPIRAKV 753
IGS F F A F Q +QP + S + + + L+ + +
Sbjct: 488 RLGIGSVFRFKADF------------QIAESQPRRIGSPPRVLGRRRVLIAADDCLARRA 535
Query: 754 SRYHIQRLGIQVEVVSDQLQC---LSQIASGSK-IINMILVEQEVWEKDTSVSTLFVNNL 809
R ++ G+++ Q LS A G + + +++++ S F +
Sbjct: 536 PRAILEAWGMEIAEARSLAQARAILSATAGGQRESFDWVVLDRPPERAVEPPSPTFGDP- 594
Query: 810 RKLGCG------FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863
C + LLA S +++ G+S+ + KP+ S L ++ MG
Sbjct: 595 ---PCPAIWMVTVTERERLLAESGANA-------GISL---LAKPVTPSALFDAIVDLMG 641
Query: 864 VGNKGNIRNWELPSM-SLRHL------LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCV 916
++ LP+ R L L G ++L+V+DN+ N +VA L+R G V
Sbjct: 642 --------DYTLPTAPPARDLVAEAAPLRGARLLLVEDNSTNQQVARDLLERIGCLVTIA 693
Query: 917 ERGKKATELLMPPHQFDACFMDIQMPEMDG 946
G++A E + FD MD+QMP MDG
Sbjct: 694 GDGRQAIERVG-RLDFDGVLMDVQMPVMDG 722
>gi|402573935|ref|YP_006623278.1| signal transduction histidine kinase [Desulfosporosinus meridiei
DSM 13257]
gi|402255132|gb|AFQ45407.1| signal transduction histidine kinase [Desulfosporosinus meridiei
DSM 13257]
Length = 1259
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 150/517 (29%), Positives = 262/517 (50%), Gaps = 72/517 (13%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
AKSQFLA +SHEIRTPMN ++G+ +L ++L TQ+ YV + + KAL+ +IN++LD
Sbjct: 540 AKSQFLANMSHEIRTPMNAIMGLTHLLRQSDLKDTQKSYVLKTEEASKALLRIINDILDF 599
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+E+GKLE+E + FNL +L+++ +L++ + +KG+++ + VP+ LIGDP R Q
Sbjct: 600 SKIEAGKLEIEMIQFNLDKVLENISNLYTISATNKGIDINFDRGEAVPDELIGDPLRLEQ 659
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
I++NL+ N+IKFT++G + V+V + EE D +++ ++ +G + + H K F
Sbjct: 660 ILSNLITNAIKFTDQGEVNVSVRVFEETEDKVKLHFRVTD-----TGIGIKEE-HIGKLF 713
Query: 616 KTFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674
F Q DGST +R +GGT
Sbjct: 714 TAFTQADGST-------------------------------------------TRKYGGT 730
Query: 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVS- 733
G+GL+ISK LV MKG+I S+ G++F F S+ +PN
Sbjct: 731 GLGLTISKQLVELMKGDIWVESVYGEGTSFEVLLQFEKDSALI----------KPNFADY 780
Query: 734 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQE 793
+ +G K LVVD + + ++V +++ + + + K ++++++
Sbjct: 781 PDLRGKKVLVVDHNKTSLVILERMLCSFSLEVTALNNPFEAIELMH--QKDFDLLVLDYN 838
Query: 794 VWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM 853
+ D S ++ + +F+ A S A + G I ++KP+ S+
Sbjct: 839 L--PDLSGIEMYKRLVANTEITLPKTIFVSAAGRESYYAQANQLG--IKYFLVKPINQSL 894
Query: 854 LAASLQRAM---GVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYG 910
+ ++ A+ IRN E+ + R L G+++L+V+DN +N VA L++ G
Sbjct: 895 MFDAVMNALKGRAWSQANRIRNEEV-QLKHRQKLAGKRLLLVEDNEINQLVAKDILEQAG 953
Query: 911 AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
V + G++A + + +++DA MD+QMP MDGY
Sbjct: 954 IHVSIADNGQEAIKYVH-GNRYDALLMDVQMPIMDGY 989
>gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
Length = 916
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 156/527 (29%), Positives = 248/527 (47%), Gaps = 70/527 (13%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AEAA AKS+FLAT+SHEIRTPMNG+LGM ++L+ T+L+ QQ + T Q+SG+ L+
Sbjct: 259 KESAEAASKAKSEFLATMSHEIRTPMNGILGMTELLLQTQLNRDQQRFAETVQSSGRHLL 318
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV-YISDRVPET 545
+IN++LD +K+ES +ELE++ F+L +++D L++F+ + KG+ELA +I
Sbjct: 319 GIINDILDFSKIESDHMELESIDFDLVQLIEDTLAMFAQPADKKGLELAAQFIPPNRAFM 378
Query: 546 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 605
+ GD R RQI NL+ N+IKFT +G + + L E + + + +G +
Sbjct: 379 VRGDSFRLRQIFANLISNAIKFTSQGEVVIRTQLCEAAGSRVNLRICVED-----TGIGI 433
Query: 606 ADRCHSWKGFKTFNQ-DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
H K F+ F+Q DGST
Sbjct: 434 PPEYHK-KIFQQFSQADGST---------------------------------------- 452
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
+R +GGTG+GL+I K L+ M G I S P G+ F E ++ +
Sbjct: 453 ---TRQYGGTGLGLTICKKLLELMGGSIHIDSTPGQGTKFQINLEL--------EKSALE 501
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 784
+QPN ++ G++ LVVD ++ R +Q IQ L + I
Sbjct: 502 HAHQPN--ITDLAGIRILVVDDNQTNREILRLQLQNWKIQAVCTHSADHALFAMTKACNI 559
Query: 785 ---INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
++++++ + + D + ++++ +L S + D I
Sbjct: 560 NEPYHLVILDMHMPKMD---GLQLAKKIHADPTLNKTRIMMLT-STHHDVTQLAKDNAGI 615
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ KP+R L + MG + + P L + L G +L+ +DN VN +V
Sbjct: 616 LRYVNKPVRQKELIDIIMDVMGRNLDNPVAPIQNPPFILDYNLHG-SVLLAEDNPVNQEV 674
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
A A L R G V GK+A +L+ H +D MD QMP MDG+E
Sbjct: 675 AKAMLSRLGLNTVIAHDGKQAVDLIR-NHHYDIILMDCQMPVMDGFE 720
Score = 42.0 bits (97), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 18/101 (17%)
Query: 863 GVGNKGNIRNWELPSMSLRHL-------LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVC 915
G G K I N EL +L H L G +IL+VDDN N ++ L+ + VC
Sbjct: 484 GQGTKFQI-NLELEKSALEHAHQPNITDLAGIRILVVDDNQTNREILRLQLQNWKIQAVC 542
Query: 916 VERGK-------KATELLMPPHQFDACFMDIQMPEMDGYEM 949
KA + P H +D+ MP+MDG ++
Sbjct: 543 THSADHALFAMTKACNINEPYH---LVILDMHMPKMDGLQL 580
>gi|392308226|ref|ZP_10270760.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas citrea NCIMB
1889]
Length = 1319
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 150/522 (28%), Positives = 251/522 (48%), Gaps = 65/522 (12%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K A+ + K +FLA +SHEIRTPMN ++GM + + T+L+ Q +YV + K L+
Sbjct: 581 KDLADRSARVKGEFLANMSHEIRTPMNAIIGMAHLALSTDLNPKQHNYVSKIDVAAKQLL 640
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
LIN++LD +K+++GK+ELE F L +LD+V+++ S K+Q+K +EL + + +P L
Sbjct: 641 HLINDILDFSKIDAGKIELEHTKFELDQLLDNVMTVISVKAQEKQLELIFDVPNTIPNNL 700
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R QI+ NL GN++KFTEKGH+ + + +E+ ++ ++
Sbjct: 701 IGDPLRLGQILINLAGNAVKFTEKGHVSIQIRELEQAEETTKI----------------- 743
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
TF SV DTG G+ + Q ++F F Q S
Sbjct: 744 ----------TF---------------------SVIDTGIGMNPQQQQKLFKSFSQADTS 772
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R +GGTG+GL+IS+ LV M GEI S GSTF FT S+ +
Sbjct: 773 ITRKYGGTGLGLTISQQLVKLMGGEIYIESTLGGGSTFYFTLEL-----------SRDQH 821
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
Q ++ + L+VD +V + + V ++ + I + K +
Sbjct: 822 TQKVALPTLSTTKNILIVDDNAQAIEVLHDMLVNMNATVSCADSAIKAIDIITTAPKPFD 881
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
++++ ++ E D ++ + + N R L LL + S+ V++
Sbjct: 882 ALIIDWQMPEMD-GLTAIEILNTRSL---LTHTKVLLTTAYGRELELKPHQKSSVAGVVL 937
Query: 847 KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 906
KP+ +S L +L +G + + E + + L G IL+ +D VN ++A L
Sbjct: 938 KPINASHLFDTLISCLGPYTQPH-TTVEPVNEQVSTSLGGISILLAEDQPVNQEIAVEIL 996
Query: 907 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
YGA + G +A + + +++D MD+QMP M G +
Sbjct: 997 SNYGAKIDVANDGVEALKKI-AENKYDVVLMDMQMPNMGGIQ 1037
>gi|402839446|ref|ZP_10887933.1| signal transduction histidine kinase domain protein [Klebsiella sp.
OBRC7]
gi|402287720|gb|EJU36150.1| signal transduction histidine kinase domain protein [Klebsiella sp.
OBRC7]
Length = 917
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 171/526 (32%), Positives = 257/526 (48%), Gaps = 89/526 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNTTQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS---IEVETELSSSKNTLSGY 603
IGDP R +QIITNLMGN+IKFTE G+I V LVE+ S +++E ++ +T G
Sbjct: 403 IGDPLRLQQIITNLMGNAIKFTEHGNIDV---LVEQRAISNSRVQIEVQI---HDTGIGI 456
Query: 604 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663
P D+ ++ F+ Q
Sbjct: 457 PERDQSRLFQAFR---------------------------------------------QA 471
Query: 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ 723
SISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S
Sbjct: 472 DASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISL 518
Query: 724 QMNNQ--PNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 780
+N P+SV ++ G K ++ A+ + + ++V V S + L
Sbjct: 519 DLNPNAVPDSVPTQCLAGKKLAYIEANAAAAQCTMELLATTPLEV-VYSPTMTALPDAH- 576
Query: 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
+++L V +D S + KL + L S DG++
Sbjct: 577 ----YDILLAGIPVSIRDLSQHRDKLERASKLADHL---VLALPCHAQVSAETLRQDGIA 629
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
+ ++KPL S+ L +L + + LP S L ++ VDDN NLK
Sbjct: 630 --ACLLKPLTSTRLLPALTASC------QTQPTVLPPRS-DSKKLPMTVMAVDDNPANLK 680
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+ A L+ V+ + G+ A E Q D MDIQMPEMDG
Sbjct: 681 LIGALLEDLVQHVILCDSGQHAVERARETQQ-DLILMDIQMPEMDG 725
>gi|188534845|ref|YP_001908642.1| hybrid sensory histidine kinase BarA [Erwinia tasmaniensis Et1/99]
gi|188029887|emb|CAO97771.1| Signal transduction histidine-protein kinase BarA [Erwinia
tasmaniensis Et1/99]
Length = 909
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 165/537 (30%), Positives = 255/537 (47%), Gaps = 112/537 (20%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++A+ A KS+FLA +SHE+RTP+NGV+G + T L+ TQ+DY+ T + S L+
Sbjct: 283 KRRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTALNSTQRDYLHTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN+VLD +K+E+GKL LE + F LRA LD+V+ L + + +KG+EL + I VP+ +
Sbjct: 343 GIINDVLDFSKLEAGKLVLETIPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNI 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QII NL+GN+IKFTE G+I + V + +E+E ++ +G ++
Sbjct: 403 IGDPMRMQQIIVNLLGNAIKFTESGNIDIRVEKRASSNNRMELEVQIHD-----TGIGIS 457
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ S ++F F Q S
Sbjct: 458 DKQQS-------------------------------------------QLFQAFRQADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG-NGSSTSNEHNSQQM 725
ISR HGGTG+GL I++ LV M GEI F S + GSTF F N ++ S+ H +
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHVNLALNPNAASDPHIMDCL 534
Query: 726 NNQPNS-VSSEFQGMKALV--VDPRPIRAKVS---------RYHIQRLGIQV-EVVS--- 769
NQ + V S KA++ ++ P++ S Y + +G+ V E+ S
Sbjct: 535 ENQHLAYVESNPAAAKAVLEMLNATPMKVSYSTSLDELTEEHYDVLLMGLPVMEMQSLEI 594
Query: 770 DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 829
D+ Q + G +I + + +V+ +D L+ G
Sbjct: 595 DEEQLAPMLQRGGSVIMALPFQMQVYAED----------LKARG---------------- 628
Query: 830 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKI 889
+ + ++KPL S+ R + V + R LP + LL ++
Sbjct: 629 -----------VTACLIKPL-------SMTRLLPVLIDHHHRRDLLPQVE--RTLLPLRV 668
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+ VDDN NLK+ A L+ +V + G+ A H D MDIQMPE+DG
Sbjct: 669 MAVDDNPANLKLIGALLEELVVDIVLCDSGEAAIVQARQQH-LDIILMDIQMPEIDG 724
>gi|444926362|ref|ZP_21245647.1| signal transduction histidine-protein kinase BarA [Escherichia coli
09BKT078844]
gi|444538794|gb|ELV18640.1| signal transduction histidine-protein kinase BarA [Escherichia coli
09BKT078844]
Length = 918
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|82545085|ref|YP_409032.1| hybrid sensory histidine kinase BarA [Shigella boydii Sb227]
gi|81246496|gb|ABB67204.1| sensor-regulator [Shigella boydii Sb227]
Length = 918
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|193065094|ref|ZP_03046168.1| sensor histidine kinase/response regulator BarA [Escherichia coli
E22]
gi|192927225|gb|EDV81845.1| sensor histidine kinase/response regulator BarA [Escherichia coli
E22]
Length = 918
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|375257047|ref|YP_005016217.1| hybrid sensory histidine kinase BarA [Klebsiella oxytoca KCTC 1686]
gi|397659669|ref|YP_006500371.1| BarA sensory histidine kinase [Klebsiella oxytoca E718]
gi|365906525|gb|AEX01978.1| hybrid sensory histidine kinase BarA [Klebsiella oxytoca KCTC 1686]
gi|394347803|gb|AFN33924.1| BarA sensory histidine kinase [Klebsiella oxytoca E718]
Length = 917
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 171/526 (32%), Positives = 257/526 (48%), Gaps = 89/526 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNTTQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS---IEVETELSSSKNTLSGY 603
IGDP R +QIITNLMGN+IKFTE G+I V LVE+ S +++E ++ +T G
Sbjct: 403 IGDPLRLQQIITNLMGNAIKFTEHGNIDV---LVEQRAISNSRVQIEVQI---HDTGIGI 456
Query: 604 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663
P D+ ++ F+ Q
Sbjct: 457 PERDQSRLFQAFR---------------------------------------------QA 471
Query: 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ 723
SISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S
Sbjct: 472 DASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISL 518
Query: 724 QMNNQ--PNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 780
+N P+SV ++ G K ++ A+ + + ++V V S + L
Sbjct: 519 DLNPNAVPDSVPTQCLAGKKLAYIEANAAAAQCTMELLATTPLEV-VYSPTMTALPDAH- 576
Query: 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
+++L V +D S + KL + L S DG++
Sbjct: 577 ----YDILLAGIPVSIRDLSQHRDKLERASKLADHL---VLALPCHAQVSAETLRQDGIA 629
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
+ ++KPL S+ L +L + + LP S L ++ VDDN NLK
Sbjct: 630 --ACLLKPLTSTRLLPALTASC------QTQPTVLPPRS-DSKKLPMTVMAVDDNPANLK 680
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+ A L+ V+ + G+ A E Q D MDIQMPEMDG
Sbjct: 681 LIGALLEDLVQHVILCDSGQHAVERARETQQ-DLILMDIQMPEMDG 725
>gi|110642927|ref|YP_670657.1| hybrid sensory histidine kinase BarA [Escherichia coli 536]
gi|191171166|ref|ZP_03032716.1| sensor histidine kinase/response regulator BarA [Escherichia coli
F11]
gi|300976311|ref|ZP_07173375.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 200-1]
gi|422373090|ref|ZP_16453419.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 60-1]
gi|427805947|ref|ZP_18973014.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
coli chi7122]
gi|427810540|ref|ZP_18977605.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
coli]
gi|432466935|ref|ZP_19709021.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE205]
gi|432472087|ref|ZP_19714127.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE206]
gi|432582132|ref|ZP_19818546.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE57]
gi|432714496|ref|ZP_19949529.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE8]
gi|433073980|ref|ZP_20260627.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE129]
gi|433078934|ref|ZP_20265458.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE131]
gi|433121317|ref|ZP_20306983.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE157]
gi|433184453|ref|ZP_20368695.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE85]
gi|443618818|ref|YP_007382674.1| hybrid sensory histidine kinase BarA [Escherichia coli APEC O78]
gi|110344519|gb|ABG70756.1| sensor protein BarA [Escherichia coli 536]
gi|190908466|gb|EDV68055.1| sensor histidine kinase/response regulator BarA [Escherichia coli
F11]
gi|300308553|gb|EFJ63073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 200-1]
gi|324015532|gb|EGB84751.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 60-1]
gi|412964129|emb|CCK48055.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
coli chi7122]
gi|412970719|emb|CCJ45369.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
coli]
gi|430992732|gb|ELD09101.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE205]
gi|430996718|gb|ELD12993.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE206]
gi|431122414|gb|ELE25283.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE57]
gi|431255075|gb|ELF48334.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE8]
gi|431585466|gb|ELI57414.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE129]
gi|431595332|gb|ELI65399.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE131]
gi|431641150|gb|ELJ08894.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE157]
gi|431704554|gb|ELJ69180.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE85]
gi|443423326|gb|AGC88230.1| hybrid sensory histidine kinase BarA [Escherichia coli APEC O78]
Length = 918
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|419233820|ref|ZP_13776592.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9B]
gi|378075627|gb|EHW37641.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9B]
Length = 918
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|350553739|ref|ZP_08922902.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
gi|349790034|gb|EGZ43960.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
700588]
Length = 918
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 161/535 (30%), Positives = 253/535 (47%), Gaps = 76/535 (14%)
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
+L +AE A+ AKS+FLA +SHEIRTPMNGV+GM +L+DT LD TQ+ Y T + S ++
Sbjct: 373 DLTLQAERANAAKSEFLANMSHEIRTPMNGVIGMTTLLLDTALDATQRHYADTVKKSAES 432
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L+ L+N++LD +KVE+GKL+LE + ++ ++D+V+S + ++ +K +EL + D V
Sbjct: 433 LLGLLNDILDFSKVEAGKLDLEHLELDIATLVDEVISAQAVRAYEKNLELLCVLDDDVLS 492
Query: 545 -TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGY 603
L GDPGR RQI+ NL+GN+IKF+E+G + V V L+E+
Sbjct: 493 LALSGDPGRLRQILNNLVGNAIKFSERGEVVVRVQLLEK--------------------- 531
Query: 604 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663
++++A L V DTG GI + +F F QV
Sbjct: 532 ------------------------RAATA---RLRFEVCDTGIGIAADKVPLLFEKFSQV 564
Query: 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ 723
S +R +GGTG+GL+I K LV M G IG S GS F F+ H +
Sbjct: 565 DASTTRRYGGTGLGLAICKQLVELMGGTIGVQSQEGQGSVFWFSVPLTLNIDVPRPHAAH 624
Query: 724 QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 783
N Q + LVVD + + + + G++ +D ++ L + K
Sbjct: 625 ATEN--------LQQRRILVVDDNATQRTLLTQRLGQWGMRAAGAADGVEALRLLYQAHK 676
Query: 784 IIN------MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD 837
+ +I ++ V + +T TL + Q L ++ S+ +
Sbjct: 677 EEHEPYQAVLINLQMPVMDGETLGRTLSADP------QMQGLLRVILPSVVRAEDPQRYQ 730
Query: 838 GVSIPSVIMKPLRSSMLAASLQR--AMGVGNKGNIRNWELPSMSLRHLL----LGRKILI 891
+ + KP+R + L LQ+ A I + + H + +IL+
Sbjct: 731 QAGFHACLPKPIRQTALLHVLQQLFAPSFDQHRMITPHTVQPVQSSHAVNFAHAQVRILL 790
Query: 892 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
V+DN VN +VA L++ G V G+ A + L +D MD+QMP MDG
Sbjct: 791 VEDNVVNQQVALGMLRKLGLQATAVNHGQAALDHLSQA-DYDLILMDVQMPVMDG 844
>gi|417691038|ref|ZP_12340257.1| signal transduction histidine-protein kinase barA [Shigella boydii
5216-82]
gi|332087561|gb|EGI92689.1| signal transduction histidine-protein kinase barA [Shigella boydii
5216-82]
Length = 918
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 165/529 (31%), Positives = 250/529 (47%), Gaps = 94/529 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + E S Q
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQC- 533
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
F G + V+P A+ + + ++V V S L ++
Sbjct: 534 ---------FAGKRLAYVEPNSAAAQCTLDILSETPLEV-VYSPTFSALPPAHYDMMLLG 583
Query: 787 M-------ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
+ + ++ E K S++ + L C Q + DG+
Sbjct: 584 IAVTFREPLTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEKLKQDGI 629
Query: 840 SIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNL 899
+ ++KPL + L +L + +N LP L + ++ VDDN NL
Sbjct: 630 G--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVDDNPANL 680
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
K+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 681 KLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|238786285|ref|ZP_04630227.1| Signal transduction histidine-protein kinase barA [Yersinia
bercovieri ATCC 43970]
gi|238712808|gb|EEQ04878.1| Signal transduction histidine-protein kinase barA [Yersinia
bercovieri ATCC 43970]
Length = 911
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 161/531 (30%), Positives = 250/531 (47%), Gaps = 99/531 (18%)
Query: 428 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 487
K+A+ A KS+FLA +SHE+RTP+NGV+G + T L TQ DY++T Q S L+
Sbjct: 274 KRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLTPTQTDYLQTIQRSANNLLC 333
Query: 488 LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 547
+IN+VLD +K+E+ KL LE + F+LR+ LD+V+ L + + +KG+EL ++I++ VPE ++
Sbjct: 334 IINDVLDFSKLEAEKLILEHIPFSLRSTLDEVIILLAHTAHEKGLELTLHINNDVPEQVV 393
Query: 548 GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 607
GD R +QI+TNL+GN+IKFTE+G+I + V + +V T
Sbjct: 394 GDAMRLQQIVTNLLGNAIKFTEQGNIDILV--------TAQVLT---------------- 429
Query: 608 RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667
A + L+V ++DTG GI Q+++F F Q SI
Sbjct: 430 ------------------------AQRVTLVVEIQDTGIGISESQQAQLFQAFRQADASI 465
Query: 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ---- 723
SR HGGTG+GL I++ LV M G+I F+S + GSTF F + S
Sbjct: 466 SRRHGGTGLGLVITERLVKEMGGDISFLSQVDRGSTFKFHLTLDLNETLSYRQPDMSYLE 525
Query: 724 -------QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLS 776
+ N + + + L + P A++ H L + V + +
Sbjct: 526 GKTLAYIERNASAARAALDILSITPLQITHSPTLAQLPVQHYDFLLVGVPIPFRNNMAVH 585
Query: 777 QIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTST 836
Q K++ + + + V S S + L++LG L +SS+R
Sbjct: 586 Q----DKLVAAMKISERVILALPSQSQVEAEQLKQLGAK-----ACLIKPLSSNRL---- 632
Query: 837 DGVSIPSVIM-KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895
IP + +PL S++ ++ + +LP K++ VDDN
Sbjct: 633 ----IPLFLSEEPLEVSLVEEQAEKPL-----------KLPF----------KVMAVDDN 667
Query: 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ L+ A V + G KA + D MDIQMPE+DG
Sbjct: 668 PANLKLIGTLLEEQVAETVLCDSGAKAIAYAR-ENTLDIILMDIQMPEIDG 717
>gi|392980458|ref|YP_006479046.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392326391|gb|AFM61344.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 919
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 168/540 (31%), Positives = 253/540 (46%), Gaps = 116/540 (21%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + +EL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLHTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRSISNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGG G+GL I++ LV M G+I F S PN GSTF F V +G T
Sbjct: 475 ISRRHGGRGLGLVITQKLVKEMGGDISFHSQPNRGSTFWFHINLDLNPNVLTDGPVTDCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PN+ +++ +V P V Y I +GI V +
Sbjct: 535 KGKRLAYVEPNAAAAQCTLDILSSTPLEVVYSPTFSALTVEHYDILLMGIPVTFTGE--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++QE K S++ L L C Q L N
Sbjct: 592 --------------LTMQQERLAKAASMTDYL---LLALPCHAQINAEELKN-------- 626
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASL-------QRAMGVGNKGNIRNWELPSMSLRHLLLG 886
DG + + ++KPL ++ L +L Q A+ + N LP MS
Sbjct: 627 ---DGAA--ACLLKPLTATRLLPALTAYCRLNQHAVALEND----EQRLP-MS------- 669
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ L+ V G +A E QFD MDIQMP MDG
Sbjct: 670 --VMAVDDNPANLKLIGVLLEDQVQHVELCTNGAEAVE-QAKQMQFDLILMDIQMPGMDG 726
>gi|408417737|ref|YP_006759151.1| sensory box histidine kinase/response regulator protein
[Desulfobacula toluolica Tol2]
gi|405104950|emb|CCK78447.1| sensory box histidine kinase/response regulator protein
[Desulfobacula toluolica Tol2]
Length = 971
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 168/547 (30%), Positives = 255/547 (46%), Gaps = 75/547 (13%)
Query: 413 IAKVEEDYHGMME----LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD 468
+++ ++D M++ K++AE KSQFLA +SHEIRTPMNGVLGM ++L+ T L
Sbjct: 276 LSQAKKDLEAMVKNLEKAKEQAEEVSRIKSQFLANMSHEIRTPMNGVLGMTELLLTTRLS 335
Query: 469 VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQ 528
Q Y T Q SG++L+ +IN++LD +K+E+GKLELE + FNL +++DV L + ++
Sbjct: 336 ENQHRYAETIQNSGESLLEIINDILDFSKIEAGKLELEMIDFNLEQLIEDVSQLLASQAH 395
Query: 529 DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 588
K +EL V I L GDP R RQ++TNL+GN+IKFTEKG I + + D+
Sbjct: 396 SKRLELVVAIKRGTRIYLKGDPTRLRQVLTNLIGNAIKFTEKGEIVIKASTTRK--DNNR 453
Query: 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGI 648
V L S K+T G DR +K F DGST
Sbjct: 454 VNLHL-SIKDTGVGINPQDRIRLFKAFSQL--DGST------------------------ 486
Query: 649 PLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708
+R +GGTG+GL+IS+ LV M G + S P GS F FT
Sbjct: 487 -------------------TRKYGGTGLGLTISRELVSLMGGVLKCDSSPGRGSDFFFTL 527
Query: 709 VFGNGSSTSNEHNSQQ---MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV 765
N N Q+ +NN +G+K L++D P ++ I ++
Sbjct: 528 PM-----RKNRENPQKTGLINNDT------LKGLKVLIIDDNPTNLEILEGQIACFCMKF 576
Query: 766 EVVSDQLQCLS--QIASGSKI-INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 822
+ + L QIA + +++L++ + + D V K + +
Sbjct: 577 DSSLRGAEGLKKLQIAQQENVPFDLVLLDMNMPDMD----GFEVIRRIKAAPDLKKPSII 632
Query: 823 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH 882
+ S+ S + I + + KP+R S L SL + + KG S +
Sbjct: 633 MLTSVWISGEDQKAMHSGINAYLTKPVRQSDLQNSLLKVLSQTLKGERFQSVTRQTSEKE 692
Query: 883 LL-LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM 941
+ IL+ +DN N +V L+++G V G +A E+ + D MD QM
Sbjct: 693 IKPFDLHILVAEDNLTNQEVTMGMLRKFGCRVSLAVNGSQAVEIFLKELP-DLVLMDCQM 751
Query: 942 PEMDGYE 948
PEMDGY+
Sbjct: 752 PEMDGYQ 758
Score = 43.9 bits (102), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ----FDACFMDI 939
L G K+LI+DDN NL++ + + RG + + L Q FD +D+
Sbjct: 547 LKGLKVLIIDDNPTNLEILEGQIACFCMKFDSSLRGAEGLKKLQIAQQENVPFDLVLLDM 606
Query: 940 QMPEMDGYEML 950
MP+MDG+E++
Sbjct: 607 NMPDMDGFEVI 617
>gi|416279324|ref|ZP_11644844.1| hybrid sensory histidine kinase BarA [Shigella boydii ATCC 9905]
gi|320182398|gb|EFW57295.1| hybrid sensory histidine kinase BarA [Shigella boydii ATCC 9905]
Length = 918
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|301645250|ref|ZP_07245202.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 146-1]
gi|331643471|ref|ZP_08344602.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H736]
gi|432637993|ref|ZP_19873860.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE81]
gi|432705538|ref|ZP_19940634.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE171]
gi|301076453|gb|EFK91259.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 146-1]
gi|331036942|gb|EGI09166.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H736]
gi|431169408|gb|ELE69627.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE81]
gi|431241322|gb|ELF35758.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE171]
Length = 918
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|157961008|ref|YP_001501042.1| hybrid sensory histidine kinase BarA [Shewanella pealeana ATCC
700345]
gi|157846008|gb|ABV86507.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC
700345]
Length = 929
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 160/520 (30%), Positives = 245/520 (47%), Gaps = 67/520 (12%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G L+ T L +QQDY+RT + S L+
Sbjct: 291 KKRAQEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHSSQQDYIRTIERSATNLL 350
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+GK+ LE + F+LR +++ +++ S +++K + L + + R+PE +
Sbjct: 351 SIINDILDFSKLEAGKMVLENIPFSLRETIEETVTMLSSSAREKELALVIDVDARIPEDV 410
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD RF QIITNL+GN+IKFT+KG + + + L EEV D V
Sbjct: 411 SGDAMRFSQIITNLVGNAIKFTDKGSVQLKLQL-EEVKDG-----------------KVH 452
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
RC + DTG G+ + QS +F F Q S
Sbjct: 453 IRCE------------------------------IIDTGIGVDEQQQSSLFQAFGQADSS 482
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR GGTG+GL I+K LV RM G+IG S PN GSTF F+ N Q +
Sbjct: 483 ISRRFGGTGLGLVITKRLVNRMGGQIGCYSEPNQGSTFWFSLPL----------NISQYS 532
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
S +G ++ +P + + R G++V + + Q + + + +
Sbjct: 533 INDTLPLSTLEGKSIMLFEPNGLTQHAIERMLLRWGLKVTIAKNIKQLEFVLTQSNHVFD 592
Query: 787 MILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846
L+ + + N KL L L+++ I + I +
Sbjct: 593 FGLMSCRAVTTTSQPA-----NALKLAKSKIDYLLLISDCIEQEDVFSQIRPY-IDKQLS 646
Query: 847 KPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGL 906
P+ +L++SL N+ S ++ L +L VDDN NLK+ L
Sbjct: 647 MPVGEKLLSSSLLDPHSSVLNDNLIALTPLSAPIKQENLS--VLAVDDNPANLKLIDTLL 704
Query: 907 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K V + G+ A + L +D FMDIQMP DG
Sbjct: 705 KELVTQVQVADTGELAVK-LAKERSYDLIFMDIQMPGTDG 743
>gi|418268018|ref|ZP_12886896.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella sonnei str. Moseley]
gi|397897575|gb|EJL13981.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella sonnei str. Moseley]
Length = 920
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|15832900|ref|NP_311673.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
Sakai]
gi|16130693|ref|NP_417266.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli str. K-12 substr. MG1655]
gi|26249187|ref|NP_755227.1| hybrid sensory histidine kinase BarA [Escherichia coli CFT073]
gi|74313358|ref|YP_311777.1| hybrid sensory histidine kinase BarA [Shigella sonnei Ss046]
gi|82778168|ref|YP_404517.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae Sd197]
gi|157159173|ref|YP_001464108.1| hybrid sensory histidine kinase BarA [Escherichia coli E24377A]
gi|157162240|ref|YP_001459558.1| hybrid sensory histidine kinase BarA [Escherichia coli HS]
gi|168750997|ref|ZP_02776019.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4113]
gi|168758477|ref|ZP_02783484.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4401]
gi|168764499|ref|ZP_02789506.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4501]
gi|168766754|ref|ZP_02791761.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4486]
gi|168777593|ref|ZP_02802600.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4196]
gi|168778774|ref|ZP_02803781.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4076]
gi|168788044|ref|ZP_02813051.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC869]
gi|168802533|ref|ZP_02827540.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC508]
gi|170018968|ref|YP_001723922.1| hybrid sensory histidine kinase BarA [Escherichia coli ATCC 8739]
gi|170082357|ref|YP_001731677.1| hybrid sensory histidine kinase BarA [Escherichia coli str. K-12
substr. DH10B]
gi|170680902|ref|YP_001744948.1| hybrid sensory histidine kinase BarA [Escherichia coli SMS-3-5]
gi|187732711|ref|YP_001881473.1| hybrid sensory histidine kinase BarA [Shigella boydii CDC 3083-94]
gi|188492553|ref|ZP_02999823.1| sensor histidine kinase/response regulator BarA [Escherichia coli
53638]
gi|191168547|ref|ZP_03030332.1| sensor histidine kinase/response regulator BarA [Escherichia coli
B7A]
gi|193071118|ref|ZP_03052043.1| sensor histidine kinase/response regulator BarA [Escherichia coli
E110019]
gi|194426308|ref|ZP_03058863.1| sensor histidine kinase/response regulator BarA [Escherichia coli
B171]
gi|194439650|ref|ZP_03071721.1| sensor histidine kinase/response regulator BarA [Escherichia coli
101-1]
gi|195936388|ref|ZP_03081770.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
EC4024]
gi|208805653|ref|ZP_03247990.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4206]
gi|208814172|ref|ZP_03255501.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4045]
gi|208820939|ref|ZP_03261259.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4042]
gi|209398921|ref|YP_002272251.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
EC4115]
gi|209920235|ref|YP_002294319.1| hybrid sensory histidine kinase BarA [Escherichia coli SE11]
gi|217327442|ref|ZP_03443525.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. TW14588]
gi|218555337|ref|YP_002388250.1| hybrid sensory histidine kinase BarA [Escherichia coli IAI1]
gi|218706282|ref|YP_002413801.1| hybrid sensory histidine kinase BarA [Escherichia coli UMN026]
gi|227888324|ref|ZP_04006129.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972]
gi|238901924|ref|YP_002927720.1| hybrid sensory histidine kinase BarA [Escherichia coli BW2952]
gi|254794728|ref|YP_003079565.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
TW14359]
gi|260845432|ref|YP_003223210.1| hybrid sensory histidine kinase BarY, in two-component regulatory
system with UvrY [Escherichia coli O103:H2 str. 12009]
gi|260856896|ref|YP_003230787.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
11368]
gi|261226085|ref|ZP_05940366.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli O157:H7 str. FRIK2000]
gi|261256660|ref|ZP_05949193.1| hybrid sensory histidine kinase BarY, in two-component regulatory
system with UvrY [Escherichia coli O157:H7 str. FRIK966]
gi|291284115|ref|YP_003500933.1| signal transduction histidine-protein kinase barA [Escherichia coli
O55:H7 str. CB9615]
gi|293406278|ref|ZP_06650204.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412]
gi|293412134|ref|ZP_06654857.1| signal transduction histidine-protein kinase barA [Escherichia coli
B354]
gi|293416033|ref|ZP_06658673.1| two-component system [Escherichia coli B185]
gi|293449112|ref|ZP_06663533.1| two-component system [Escherichia coli B088]
gi|298382015|ref|ZP_06991612.1| two-component system [Escherichia coli FVEC1302]
gi|300815797|ref|ZP_07096021.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 107-1]
gi|300820572|ref|ZP_07100723.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 119-7]
gi|300898160|ref|ZP_07116522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 198-1]
gi|300906689|ref|ZP_07124377.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 84-1]
gi|300923241|ref|ZP_07139295.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 182-1]
gi|300950514|ref|ZP_07164424.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 116-1]
gi|300958100|ref|ZP_07170260.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 175-1]
gi|300976048|ref|ZP_07173263.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 45-1]
gi|301026289|ref|ZP_07189744.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 196-1]
gi|301027557|ref|ZP_07190890.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 69-1]
gi|301049457|ref|ZP_07196415.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 185-1]
gi|301304554|ref|ZP_07210664.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 124-1]
gi|301325726|ref|ZP_07219183.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 78-1]
gi|306812334|ref|ZP_07446532.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101]
gi|307312785|ref|ZP_07592415.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
gi|309786099|ref|ZP_07680728.1| signal transduction histidine-protein kinase barA [Shigella
dysenteriae 1617]
gi|309795252|ref|ZP_07689671.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 145-7]
gi|312972998|ref|ZP_07787171.1| signal transduction histidine-protein kinase barA [Escherichia coli
1827-70]
gi|331664346|ref|ZP_08365252.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA143]
gi|331669520|ref|ZP_08370366.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA271]
gi|331674279|ref|ZP_08375039.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA280]
gi|331678763|ref|ZP_08379437.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H591]
gi|331684406|ref|ZP_08384998.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H299]
gi|332280547|ref|ZP_08392960.1| hybrid sensory histidine kinase in two-component system response
regulatory system with UvrY [Shigella sp. D9]
gi|383179949|ref|YP_005457954.1| hybrid sensory histidine kinase BarA [Shigella sonnei 53G]
gi|386281827|ref|ZP_10059486.1| signal transduction histidine-protein kinase BarA [Escherichia sp.
4_1_40B]
gi|386594474|ref|YP_006090874.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1]
gi|386615508|ref|YP_006135174.1| signal transduction histidine-protein kinase BarA [Escherichia coli
UMNK88]
gi|386625503|ref|YP_006145231.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli O7:K1 str. CE10]
gi|386630521|ref|YP_006150241.1| hybrid sensory histidine kinase BarA [Escherichia coli str. 'clone
D i2']
gi|386635441|ref|YP_006155160.1| hybrid sensory histidine kinase BarA [Escherichia coli str. 'clone
D i14']
gi|386640266|ref|YP_006107064.1| sensor-regulator [Escherichia coli ABU 83972]
gi|386706046|ref|YP_006169893.1| Signal transduction histidine-protein kinase barA [Escherichia coli
P12b]
gi|387508142|ref|YP_006160398.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
RM12579]
gi|387613408|ref|YP_006116524.1| two-component sensor kinase/response regulator [Escherichia coli
ETEC H10407]
gi|387622469|ref|YP_006130097.1| signal transduction histidine-protein kinase [Escherichia coli DH1]
gi|387883966|ref|YP_006314268.1| hybrid sensory histidine kinase BarA [Escherichia coli Xuzhou21]
gi|388478802|ref|YP_490994.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli str. K-12 substr. W3110]
gi|404376095|ref|ZP_10981271.1| signal transduction histidine-protein kinase BarA [Escherichia sp.
1_1_43]
gi|407470660|ref|YP_006782897.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407480679|ref|YP_006777828.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
2011C-3493]
gi|410481245|ref|YP_006768791.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415779156|ref|ZP_11489928.1| signal transduction histidine-protein kinase barA [Escherichia coli
3431]
gi|415786603|ref|ZP_11493659.1| signal transduction histidine-protein kinase barA [Escherichia coli
EPECa14]
gi|415802723|ref|ZP_11500083.1| signal transduction histidine-protein kinase barA [Escherichia coli
E128010]
gi|415830226|ref|ZP_11516128.1| signal transduction histidine-protein kinase barA [Escherichia coli
OK1357]
gi|415839704|ref|ZP_11521446.1| signal transduction histidine-protein kinase barA [Escherichia coli
RN587/1]
gi|415845677|ref|ZP_11525175.1| signal transduction histidine-protein kinase barA [Shigella sonnei
53G]
gi|415862006|ref|ZP_11535538.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 85-1]
gi|415875153|ref|ZP_11541952.1| sensor protein GacS [Escherichia coli MS 79-10]
gi|416314607|ref|ZP_11658842.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
1044]
gi|416321939|ref|ZP_11663787.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
EC1212]
gi|416327678|ref|ZP_11667598.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
1125]
gi|416340193|ref|ZP_11675208.1| hybrid sensory histidine kinase BarA [Escherichia coli EC4100B]
gi|416776895|ref|ZP_11874929.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
G5101]
gi|416788355|ref|ZP_11879854.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
493-89]
gi|416800342|ref|ZP_11884766.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
H 2687]
gi|416821567|ref|ZP_11894181.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
USDA 5905]
gi|416831986|ref|ZP_11899276.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
LSU-61]
gi|417123432|ref|ZP_11972342.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0246]
gi|417131759|ref|ZP_11976544.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5.0588]
gi|417140245|ref|ZP_11983495.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0259]
gi|417151085|ref|ZP_11990824.1| signal transduction histidine-protein kinase BarA [Escherichia coli
1.2264]
gi|417158307|ref|ZP_11995931.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0497]
gi|417166538|ref|ZP_11999894.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0741]
gi|417176363|ref|ZP_12006159.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.2608]
gi|417186397|ref|ZP_12011540.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93.0624]
gi|417251766|ref|ZP_12043531.1| signal transduction histidine-protein kinase BarA [Escherichia coli
4.0967]
gi|417262307|ref|ZP_12049781.1| signal transduction histidine-protein kinase BarA [Escherichia coli
2.3916]
gi|417269489|ref|ZP_12056849.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.3884]
gi|417272771|ref|ZP_12060120.1| signal transduction histidine-protein kinase BarA [Escherichia coli
2.4168]
gi|417277282|ref|ZP_12064607.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.2303]
gi|417280932|ref|ZP_12068232.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3003]
gi|417290845|ref|ZP_12078126.1| signal transduction histidine-protein kinase BarA [Escherichia coli
B41]
gi|417295753|ref|ZP_12083000.1| signal transduction histidine-protein kinase BarA [Escherichia coli
900105 (10e)]
gi|417309227|ref|ZP_12096066.1| Signal transduction histidine-protein kinase BarA [Escherichia coli
PCN033]
gi|417582274|ref|ZP_12233075.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_B2F1]
gi|417587802|ref|ZP_12238568.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_C165-02]
gi|417598084|ref|ZP_12248718.1| signal transduction histidine-protein kinase barA [Escherichia coli
3030-1]
gi|417603442|ref|ZP_12254009.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_94C]
gi|417609411|ref|ZP_12259911.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_DG131-3]
gi|417614242|ref|ZP_12264699.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_EH250]
gi|417619370|ref|ZP_12269783.1| signal transduction histidine-protein kinase barA [Escherichia coli
G58-1]
gi|417624772|ref|ZP_12275068.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_H.1.8]
gi|417630091|ref|ZP_12280327.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_MHI813]
gi|417635804|ref|ZP_12286015.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_S1191]
gi|417640573|ref|ZP_12290711.1| signal transduction histidine-protein kinase barA [Escherichia coli
TX1999]
gi|417668179|ref|ZP_12317721.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_O31]
gi|417683640|ref|ZP_12332987.1| signal transduction histidine-protein kinase barA [Shigella boydii
3594-74]
gi|417866856|ref|ZP_12511896.1| hypothetical protein C22711_3784 [Escherichia coli O104:H4 str.
C227-11]
gi|417945406|ref|ZP_12588639.1| hybrid sensory histidine kinase BarA [Escherichia coli XH140A]
gi|417975626|ref|ZP_12616424.1| hybrid sensory histidine kinase BarA [Escherichia coli XH001]
gi|418041346|ref|ZP_12679571.1| hybrid sensory histidine kinase BarA [Escherichia coli W26]
gi|418304341|ref|ZP_12916135.1| signal transduction histidine-protein kinase barA [Escherichia coli
UMNF18]
gi|418942462|ref|ZP_13495736.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H43
str. T22]
gi|418956840|ref|ZP_13508765.1| hybrid sensory histidine kinase BarA [Escherichia coli J53]
gi|419046674|ref|ZP_13593609.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3A]
gi|419052515|ref|ZP_13599382.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3B]
gi|419058508|ref|ZP_13605311.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3C]
gi|419063999|ref|ZP_13610724.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3D]
gi|419070949|ref|ZP_13616564.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3E]
gi|419076907|ref|ZP_13622413.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3F]
gi|419081973|ref|ZP_13627420.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4A]
gi|419087811|ref|ZP_13633164.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4B]
gi|419093927|ref|ZP_13639209.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4C]
gi|419099496|ref|ZP_13644690.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4D]
gi|419105322|ref|ZP_13650449.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4E]
gi|419110787|ref|ZP_13655841.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4F]
gi|419116159|ref|ZP_13661174.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5A]
gi|419127231|ref|ZP_13672109.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5C]
gi|419132808|ref|ZP_13677642.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5D]
gi|419143712|ref|ZP_13688446.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC6A]
gi|419149710|ref|ZP_13694362.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC6B]
gi|419155204|ref|ZP_13699763.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC6C]
gi|419160516|ref|ZP_13705017.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC6D]
gi|419165567|ref|ZP_13710021.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC6E]
gi|419171483|ref|ZP_13715368.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC7A]
gi|419192863|ref|ZP_13736314.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC7E]
gi|419211115|ref|ZP_13754188.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8C]
gi|419217048|ref|ZP_13760044.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8D]
gi|419222794|ref|ZP_13765711.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8E]
gi|419228204|ref|ZP_13771052.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9A]
gi|419239198|ref|ZP_13781909.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9C]
gi|419244715|ref|ZP_13787350.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9D]
gi|419250522|ref|ZP_13793095.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9E]
gi|419256322|ref|ZP_13798829.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10A]
gi|419262620|ref|ZP_13805031.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10B]
gi|419268739|ref|ZP_13811084.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10C]
gi|419274043|ref|ZP_13816334.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10D]
gi|419279290|ref|ZP_13821534.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10E]
gi|419285471|ref|ZP_13827640.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10F]
gi|419290804|ref|ZP_13832893.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC11A]
gi|419296088|ref|ZP_13838131.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC11B]
gi|419301544|ref|ZP_13843541.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC11C]
gi|419307669|ref|ZP_13849567.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC11D]
gi|419312684|ref|ZP_13854544.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC11E]
gi|419318071|ref|ZP_13859872.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC12A]
gi|419341213|ref|ZP_13882674.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC12E]
gi|419346457|ref|ZP_13887828.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13A]
gi|419350919|ref|ZP_13892252.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13B]
gi|419356322|ref|ZP_13897575.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13C]
gi|419366514|ref|ZP_13907670.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13E]
gi|419371254|ref|ZP_13912367.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC14A]
gi|419376752|ref|ZP_13917775.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC14B]
gi|419382065|ref|ZP_13923011.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC14C]
gi|419387406|ref|ZP_13928279.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC14D]
gi|419392884|ref|ZP_13933687.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15A]
gi|419397864|ref|ZP_13938632.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15B]
gi|419403271|ref|ZP_13943991.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15C]
gi|419408435|ref|ZP_13949121.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15D]
gi|419701586|ref|ZP_14229185.1| hybrid sensory histidine kinase BarA [Escherichia coli SCI-07]
gi|419805177|ref|ZP_14330320.1| hybrid sensory histidine kinase BarA [Escherichia coli AI27]
gi|419811308|ref|ZP_14336184.1| hybrid sensory histidine kinase BarA [Escherichia coli O32:H37 str.
P4]
gi|419862064|ref|ZP_14384681.1| hybrid sensory histidine kinase BarA [Escherichia coli O103:H25
str. CVM9340]
gi|419867629|ref|ZP_14389944.1| hybrid sensory histidine kinase BarA [Escherichia coli O103:H2 str.
CVM9450]
gi|419875036|ref|ZP_14396917.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
str. CVM9534]
gi|419885838|ref|ZP_14406502.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
str. CVM9545]
gi|419901690|ref|ZP_14421005.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM9942]
gi|419910574|ref|ZP_14429090.1| signal transduction histidine-protein kinase barA [Escherichia coli
O26:H11 str. CVM10026]
gi|419920079|ref|ZP_14438211.1| hybrid sensory histidine kinase BarA [Escherichia coli KD2]
gi|419924275|ref|ZP_14442168.1| hybrid sensory histidine kinase BarA [Escherichia coli 541-15]
gi|419927198|ref|ZP_14444936.1| hybrid sensory histidine kinase BarA [Escherichia coli 541-1]
gi|419934569|ref|ZP_14451676.1| hybrid sensory histidine kinase BarA [Escherichia coli 576-1]
gi|419948385|ref|ZP_14464682.1| hybrid sensory histidine kinase BarA [Escherichia coli CUMT8]
gi|420099313|ref|ZP_14610548.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
str. CVM9455]
gi|420115209|ref|ZP_14624786.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM10021]
gi|420123299|ref|ZP_14632191.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM10030]
gi|420128790|ref|ZP_14637338.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM10224]
gi|420134441|ref|ZP_14642548.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM9952]
gi|420271077|ref|ZP_14773431.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA22]
gi|420276797|ref|ZP_14779079.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA40]
gi|420282434|ref|ZP_14784667.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW06591]
gi|420288050|ref|ZP_14790234.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW10246]
gi|420293793|ref|ZP_14795908.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW11039]
gi|420299711|ref|ZP_14801757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW09109]
gi|420305692|ref|ZP_14807682.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW10119]
gi|420311184|ref|ZP_14813114.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1738]
gi|420316890|ref|ZP_14818763.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1734]
gi|420327153|ref|ZP_14828899.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri CCH060]
gi|420354166|ref|ZP_14855256.1| signal transduction histidine-protein kinase BarA [Shigella boydii
4444-74]
gi|420360096|ref|ZP_14861057.1| signal transduction histidine-protein kinase BarA [Shigella sonnei
3226-85]
gi|420364699|ref|ZP_14865573.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella sonnei 4822-66]
gi|420381930|ref|ZP_14881370.1| signal transduction histidine-protein kinase BarA [Shigella
dysenteriae 225-75]
gi|420386876|ref|ZP_14886222.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EPECa12]
gi|420392768|ref|ZP_14892016.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli EPEC C342-62]
gi|421683801|ref|ZP_16123592.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella flexneri 1485-80]
gi|421813777|ref|ZP_16249489.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0416]
gi|421825606|ref|ZP_16260961.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK920]
gi|421832303|ref|ZP_16267587.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA7]
gi|422331782|ref|ZP_16412797.1| signal transduction histidine-protein kinase BarA [Escherichia coli
4_1_47FAA]
gi|422355752|ref|ZP_16436459.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 117-3]
gi|422363517|ref|ZP_16444054.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 153-1]
gi|422383134|ref|ZP_16463286.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 57-2]
gi|422760244|ref|ZP_16814004.1| hsp90-like protein [Escherichia coli E1167]
gi|422767711|ref|ZP_16821437.1| hsp90-like protein [Escherichia coli E1520]
gi|422775992|ref|ZP_16829647.1| hsp90-like protein [Escherichia coli H120]
gi|422787693|ref|ZP_16840431.1| hsp90-like protein [Escherichia coli H489]
gi|422791913|ref|ZP_16844615.1| hsp90-like protein [Escherichia coli TA007]
gi|422817900|ref|ZP_16866113.1| signal transduction histidine-protein kinase BarA [Escherichia coli
M919]
gi|422828163|ref|ZP_16876335.1| signal transduction histidine-protein kinase BarA [Escherichia coli
B093]
gi|422834276|ref|ZP_16882339.1| signal transduction histidine-protein kinase BarA [Escherichia coli
E101]
gi|422988887|ref|ZP_16979660.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. C227-11]
gi|422995779|ref|ZP_16986543.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. C236-11]
gi|423000925|ref|ZP_16991679.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 09-7901]
gi|423004594|ref|ZP_16995340.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 04-8351]
gi|423011096|ref|ZP_17001830.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-3677]
gi|423020324|ref|ZP_17011033.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4404]
gi|423025490|ref|ZP_17016187.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4522]
gi|423031311|ref|ZP_17021998.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4623]
gi|423039136|ref|ZP_17029810.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|423044256|ref|ZP_17034923.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|423045985|ref|ZP_17036645.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|423054523|ref|ZP_17043330.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|423061498|ref|ZP_17050294.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|423703876|ref|ZP_17678301.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H730]
gi|423706938|ref|ZP_17681321.1| signal transduction histidine-protein kinase BarA [Escherichia coli
B799]
gi|423726588|ref|ZP_17700593.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA31]
gi|424078891|ref|ZP_17815871.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA505]
gi|424085351|ref|ZP_17821847.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA517]
gi|424091765|ref|ZP_17827699.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1996]
gi|424098398|ref|ZP_17833700.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1985]
gi|424104630|ref|ZP_17839392.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1990]
gi|424111291|ref|ZP_17845527.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93-001]
gi|424117228|ref|ZP_17851067.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA3]
gi|424123410|ref|ZP_17856731.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA5]
gi|424129568|ref|ZP_17862475.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA9]
gi|424135880|ref|ZP_17868342.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA10]
gi|424142429|ref|ZP_17874310.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA14]
gi|424148843|ref|ZP_17880219.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA15]
gi|424154668|ref|ZP_17885617.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA24]
gi|424252512|ref|ZP_17891178.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA25]
gi|424330865|ref|ZP_17897084.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA28]
gi|424451105|ref|ZP_17902801.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA32]
gi|424457301|ref|ZP_17908432.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA33]
gi|424463750|ref|ZP_17914170.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA39]
gi|424470071|ref|ZP_17919893.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA41]
gi|424476590|ref|ZP_17925908.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA42]
gi|424482350|ref|ZP_17931330.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW07945]
gi|424488517|ref|ZP_17937078.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW09098]
gi|424495112|ref|ZP_17942802.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW09195]
gi|424501877|ref|ZP_17948773.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4203]
gi|424508127|ref|ZP_17954523.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4196]
gi|424515458|ref|ZP_17960128.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW14313]
gi|424521673|ref|ZP_17965799.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW14301]
gi|424527558|ref|ZP_17971275.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4421]
gi|424533713|ref|ZP_17977062.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4422]
gi|424545864|ref|ZP_17988262.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4402]
gi|424552105|ref|ZP_17993960.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4439]
gi|424558282|ref|ZP_17999699.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4436]
gi|424564626|ref|ZP_18005630.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4437]
gi|424570764|ref|ZP_18011318.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4448]
gi|424576920|ref|ZP_18016986.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1845]
gi|424582748|ref|ZP_18022395.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1863]
gi|424754069|ref|ZP_18181989.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424765849|ref|ZP_18193218.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
str. CFSAN001630]
gi|425099421|ref|ZP_18502153.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.4870]
gi|425105516|ref|ZP_18507835.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5.2239]
gi|425111531|ref|ZP_18513452.1| signal transduction histidine-protein kinase BarA [Escherichia coli
6.0172]
gi|425116313|ref|ZP_18518104.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0566]
gi|425127452|ref|ZP_18528621.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0586]
gi|425133187|ref|ZP_18534037.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.2524]
gi|425139773|ref|ZP_18540155.1| signal transduction histidine-protein kinase BarA [Escherichia coli
10.0833]
gi|425145481|ref|ZP_18545479.1| signal transduction histidine-protein kinase BarA [Escherichia coli
10.0869]
gi|425151595|ref|ZP_18551210.1| signal transduction histidine-protein kinase BarA [Escherichia coli
88.0221]
gi|425157468|ref|ZP_18556732.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA34]
gi|425169564|ref|ZP_18568038.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA507]
gi|425181657|ref|ZP_18579353.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1999]
gi|425187925|ref|ZP_18585200.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1997]
gi|425194696|ref|ZP_18591465.1| signal transduction histidine-protein kinase BarA [Escherichia coli
NE1487]
gi|425201169|ref|ZP_18597378.1| signal transduction histidine-protein kinase BarA [Escherichia coli
NE037]
gi|425207558|ref|ZP_18603355.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK2001]
gi|425213310|ref|ZP_18608712.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA4]
gi|425219433|ref|ZP_18614399.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA23]
gi|425225983|ref|ZP_18620451.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA49]
gi|425232244|ref|ZP_18626285.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA45]
gi|425238164|ref|ZP_18631884.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TT12B]
gi|425244383|ref|ZP_18637689.1| signal transduction histidine-protein kinase BarA [Escherichia coli
MA6]
gi|425250543|ref|ZP_18643485.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5905]
gi|425256373|ref|ZP_18648891.1| signal transduction histidine-protein kinase BarA [Escherichia coli
CB7326]
gi|425262635|ref|ZP_18654641.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC96038]
gi|425268633|ref|ZP_18660264.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5412]
gi|425279157|ref|ZP_18670390.1| signal transduction histidine-protein kinase BarA [Escherichia coli
ARS4.2123]
gi|425284476|ref|ZP_18675508.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW00353]
gi|425289917|ref|ZP_18680751.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3006]
gi|425296067|ref|ZP_18686262.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA38]
gi|425301624|ref|ZP_18691509.1| signal transduction histidine-protein kinase BarA [Escherichia coli
07798]
gi|425306521|ref|ZP_18696216.1| signal transduction histidine-protein kinase BarA [Escherichia coli
N1]
gi|425312771|ref|ZP_18701954.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1735]
gi|425318760|ref|ZP_18707550.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1736]
gi|425324835|ref|ZP_18713202.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1737]
gi|425331198|ref|ZP_18719050.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1846]
gi|425337378|ref|ZP_18724747.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1847]
gi|425343711|ref|ZP_18730602.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1848]
gi|425349517|ref|ZP_18735987.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1849]
gi|425355817|ref|ZP_18741885.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1850]
gi|425361778|ref|ZP_18747426.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1856]
gi|425367972|ref|ZP_18753121.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1862]
gi|425374305|ref|ZP_18758949.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1864]
gi|425380973|ref|ZP_18764982.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1865]
gi|425387199|ref|ZP_18770758.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1866]
gi|425393851|ref|ZP_18776960.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1868]
gi|425399986|ref|ZP_18782693.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1869]
gi|425406074|ref|ZP_18788297.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1870]
gi|425412462|ref|ZP_18794226.1| signal transduction histidine-protein kinase BarA [Escherichia coli
NE098]
gi|425418788|ref|ZP_18800059.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK523]
gi|425423606|ref|ZP_18804769.1| signal transduction histidine-protein kinase BarA [Escherichia coli
0.1288]
gi|425430045|ref|ZP_18810657.1| signal transduction histidine-protein kinase BarA [Escherichia coli
0.1304]
gi|428948477|ref|ZP_19020757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
88.1467]
gi|428954560|ref|ZP_19026358.1| signal transduction histidine-protein kinase BarA [Escherichia coli
88.1042]
gi|428960537|ref|ZP_19031842.1| signal transduction histidine-protein kinase BarA [Escherichia coli
89.0511]
gi|428967155|ref|ZP_19037874.1| signal transduction histidine-protein kinase BarA [Escherichia coli
90.0091]
gi|428972950|ref|ZP_19043288.1| signal transduction histidine-protein kinase BarA [Escherichia coli
90.0039]
gi|428979471|ref|ZP_19049294.1| signal transduction histidine-protein kinase BarA [Escherichia coli
90.2281]
gi|428985116|ref|ZP_19054512.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93.0055]
gi|428991275|ref|ZP_19060266.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93.0056]
gi|429003405|ref|ZP_19071525.1| signal transduction histidine-protein kinase BarA [Escherichia coli
95.0183]
gi|429016041|ref|ZP_19082934.1| signal transduction histidine-protein kinase BarA [Escherichia coli
95.0943]
gi|429027937|ref|ZP_19093940.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0427]
gi|429034126|ref|ZP_19099651.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0939]
gi|429040204|ref|ZP_19105309.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0932]
gi|429045977|ref|ZP_19110691.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0107]
gi|429051485|ref|ZP_19116053.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0003]
gi|429056899|ref|ZP_19121212.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.1742]
gi|429062387|ref|ZP_19126396.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0007]
gi|429068664|ref|ZP_19132128.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0672]
gi|429074585|ref|ZP_19137838.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0678]
gi|429079821|ref|ZP_19142956.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0713]
gi|429720353|ref|ZP_19255280.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429772253|ref|ZP_19304273.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02030]
gi|429777200|ref|ZP_19309174.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429785925|ref|ZP_19317820.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02092]
gi|429791815|ref|ZP_19323669.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02093]
gi|429792664|ref|ZP_19324512.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02281]
gi|429799239|ref|ZP_19331037.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02318]
gi|429802856|ref|ZP_19334616.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02913]
gi|429812652|ref|ZP_19344335.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-03439]
gi|429813200|ref|ZP_19344879.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-04080]
gi|429818408|ref|ZP_19350042.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-03943]
gi|429827831|ref|ZP_19358870.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0109]
gi|429834192|ref|ZP_19364531.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0010]
gi|429904759|ref|ZP_19370738.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429908895|ref|ZP_19374859.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429914769|ref|ZP_19380716.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429919799|ref|ZP_19385730.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429925619|ref|ZP_19391532.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429929555|ref|ZP_19395457.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429936094|ref|ZP_19401980.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429941774|ref|ZP_19407648.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429944455|ref|ZP_19410317.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429952013|ref|ZP_19417859.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429955362|ref|ZP_19421194.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec12-0466]
gi|432354693|ref|ZP_19597962.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE2]
gi|432366268|ref|ZP_19609387.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE10]
gi|432377958|ref|ZP_19620945.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE12]
gi|432382485|ref|ZP_19625425.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE15]
gi|432388417|ref|ZP_19631299.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE16]
gi|432393240|ref|ZP_19636069.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE21]
gi|432403044|ref|ZP_19645793.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE26]
gi|432412907|ref|ZP_19655567.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE39]
gi|432418237|ref|ZP_19660833.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE44]
gi|432427314|ref|ZP_19669805.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE181]
gi|432432982|ref|ZP_19675407.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE187]
gi|432437464|ref|ZP_19679851.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE188]
gi|432457805|ref|ZP_19699985.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE201]
gi|432461775|ref|ZP_19703917.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE204]
gi|432477004|ref|ZP_19718996.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE208]
gi|432482095|ref|ZP_19724047.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE210]
gi|432496800|ref|ZP_19738595.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE214]
gi|432505544|ref|ZP_19747265.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE220]
gi|432515048|ref|ZP_19752269.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE224]
gi|432518872|ref|ZP_19756054.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE228]
gi|432524938|ref|ZP_19762063.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE230]
gi|432527577|ref|ZP_19764663.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE233]
gi|432539042|ref|ZP_19775940.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE235]
gi|432565046|ref|ZP_19801620.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE51]
gi|432569826|ref|ZP_19806335.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE53]
gi|432577008|ref|ZP_19813462.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE56]
gi|432593959|ref|ZP_19830272.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE60]
gi|432603430|ref|ZP_19839672.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE66]
gi|432608626|ref|ZP_19844809.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE67]
gi|432612766|ref|ZP_19848924.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE72]
gi|432622992|ref|ZP_19859015.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE76]
gi|432632543|ref|ZP_19868465.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE80]
gi|432642252|ref|ZP_19878080.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE83]
gi|432647318|ref|ZP_19883104.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE86]
gi|432652267|ref|ZP_19888018.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE87]
gi|432656909|ref|ZP_19892610.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE93]
gi|432661989|ref|ZP_19897627.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE111]
gi|432667245|ref|ZP_19902822.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE116]
gi|432671860|ref|ZP_19907386.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE119]
gi|432675886|ref|ZP_19911341.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE142]
gi|432681388|ref|ZP_19916755.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE143]
gi|432686596|ref|ZP_19921889.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE156]
gi|432687987|ref|ZP_19923264.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE161]
gi|432700177|ref|ZP_19935328.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE169]
gi|432719893|ref|ZP_19954859.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE9]
gi|432733526|ref|ZP_19968352.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE45]
gi|432738238|ref|ZP_19972993.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE42]
gi|432746742|ref|ZP_19981405.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE43]
gi|432751206|ref|ZP_19985803.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE29]
gi|432760612|ref|ZP_19995103.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE46]
gi|432766132|ref|ZP_20000554.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE48]
gi|432771703|ref|ZP_20006024.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE50]
gi|432775831|ref|ZP_20010097.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE54]
gi|432784657|ref|ZP_20018835.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE63]
gi|432793938|ref|ZP_20028020.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE78]
gi|432795439|ref|ZP_20029499.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE79]
gi|432806944|ref|ZP_20040859.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE91]
gi|432810467|ref|ZP_20044345.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE101]
gi|432816501|ref|ZP_20050263.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE115]
gi|432828404|ref|ZP_20062022.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE135]
gi|432835714|ref|ZP_20069248.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE136]
gi|432845759|ref|ZP_20078493.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE141]
gi|432853904|ref|ZP_20082449.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE144]
gi|432863894|ref|ZP_20087706.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE146]
gi|432870214|ref|ZP_20090671.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE147]
gi|432876674|ref|ZP_20094562.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE154]
gi|432887876|ref|ZP_20101804.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE158]
gi|432906143|ref|ZP_20114871.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE194]
gi|432914086|ref|ZP_20119626.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE190]
gi|432935737|ref|ZP_20135005.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE184]
gi|432939222|ref|ZP_20137372.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE183]
gi|432948834|ref|ZP_20143757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE196]
gi|432956436|ref|ZP_20148135.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE197]
gi|432963124|ref|ZP_20152543.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE202]
gi|432968838|ref|ZP_20157750.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE203]
gi|432972902|ref|ZP_20161766.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE207]
gi|432974894|ref|ZP_20163729.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE209]
gi|432986505|ref|ZP_20175223.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE215]
gi|432996449|ref|ZP_20185033.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE218]
gi|433001020|ref|ZP_20189542.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE223]
gi|433019858|ref|ZP_20208038.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE105]
gi|433039749|ref|ZP_20227345.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE113]
gi|433044310|ref|ZP_20231799.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE117]
gi|433049168|ref|ZP_20236511.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE120]
gi|433054422|ref|ZP_20241591.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE122]
gi|433059228|ref|ZP_20246268.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE124]
gi|433064191|ref|ZP_20251105.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE125]
gi|433069068|ref|ZP_20255848.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE128]
gi|433083657|ref|ZP_20270111.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE133]
gi|433088427|ref|ZP_20274794.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE137]
gi|433093139|ref|ZP_20279398.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE138]
gi|433102330|ref|ZP_20288407.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE145]
gi|433116632|ref|ZP_20302419.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE153]
gi|433126302|ref|ZP_20311855.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE160]
gi|433131304|ref|ZP_20316735.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE163]
gi|433135965|ref|ZP_20321303.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE166]
gi|433140370|ref|ZP_20325621.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE167]
gi|433145346|ref|ZP_20330485.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE168]
gi|433150289|ref|ZP_20335304.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE174]
gi|433159805|ref|ZP_20344636.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE177]
gi|433179609|ref|ZP_20364000.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE82]
gi|433189530|ref|ZP_20373623.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE88]
gi|433194811|ref|ZP_20378793.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE90]
gi|433208866|ref|ZP_20392538.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE97]
gi|433213650|ref|ZP_20397238.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE99]
gi|442594308|ref|ZP_21012222.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|442603658|ref|ZP_21018529.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
Nissle 1917]
gi|444932062|ref|ZP_21251099.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0814]
gi|444937492|ref|ZP_21256267.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0815]
gi|444943136|ref|ZP_21261651.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0816]
gi|444948652|ref|ZP_21266962.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0839]
gi|444954167|ref|ZP_21272258.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0848]
gi|444959681|ref|ZP_21277532.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1753]
gi|444964836|ref|ZP_21282434.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1775]
gi|444970820|ref|ZP_21288181.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1793]
gi|444976102|ref|ZP_21293220.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1805]
gi|444981496|ref|ZP_21298406.1| signal transduction histidine-protein kinase BarA [Escherichia coli
ATCC 700728]
gi|444986897|ref|ZP_21303677.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA11]
gi|444992198|ref|ZP_21308840.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA19]
gi|444997503|ref|ZP_21314000.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA13]
gi|445003076|ref|ZP_21319465.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA2]
gi|445008508|ref|ZP_21324747.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA47]
gi|445013614|ref|ZP_21329721.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA48]
gi|445019515|ref|ZP_21335478.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA8]
gi|445024898|ref|ZP_21340720.1| signal transduction histidine-protein kinase BarA [Escherichia coli
7.1982]
gi|445030320|ref|ZP_21345992.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1781]
gi|445035741|ref|ZP_21351271.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1762]
gi|445041367|ref|ZP_21356739.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA35]
gi|445046594|ref|ZP_21361844.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.4880]
gi|445052136|ref|ZP_21367176.1| signal transduction histidine-protein kinase BarA [Escherichia coli
95.0083]
gi|445057868|ref|ZP_21372726.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0670]
gi|450191892|ref|ZP_21891440.1| hybrid sensory histidine kinase BarA [Escherichia coli SEPT362]
gi|450220996|ref|ZP_21896490.1| hybrid sensory histidine kinase BarA [Escherichia coli O08]
gi|452969389|ref|ZP_21967616.1| sensory histidine kinase [Escherichia coli O157:H7 str. EC4009]
gi|83288337|sp|P0AEC7.1|BARA_ECO57 RecName: Full=Signal transduction histidine-protein kinase BarA
gi|83288338|sp|P0AEC6.1|BARA_ECOL6 RecName: Full=Signal transduction histidine-protein kinase BarA
gi|83288339|sp|P0AEC5.1|BARA_ECOLI RecName: Full=Signal transduction histidine-protein kinase BarA
gi|26109594|gb|AAN81797.1|AE016765_199 Sensor protein barA [Escherichia coli CFT073]
gi|216535|dbj|BAA01710.1| sensor-regulator protein [Escherichia coli]
gi|1789149|gb|AAC75828.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli str. K-12 substr. MG1655]
gi|13363117|dbj|BAB37069.1| sensor-regulator protein barA [Escherichia coli O157:H7 str. Sakai]
gi|73856835|gb|AAZ89542.1| sensor-regulator, activates OmpR by phophorylation [Shigella sonnei
Ss046]
gi|81242316|gb|ABB63026.1| sensor-regulator [Shigella dysenteriae Sd197]
gi|85675605|dbj|BAA16571.2| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli str. K12 substr. W3110]
gi|157067920|gb|ABV07175.1| sensor histidine kinase/response regulator BarA [Escherichia coli
HS]
gi|157081203|gb|ABV20911.1| sensor histidine kinase/response regulator BarA [Escherichia coli
E24377A]
gi|169753896|gb|ACA76595.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739]
gi|169890192|gb|ACB03899.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli str. K-12 substr. DH10B]
gi|170518620|gb|ACB16798.1| sensor histidine kinase/response regulator BarA [Escherichia coli
SMS-3-5]
gi|187429703|gb|ACD08977.1| sensor histidine kinase/response regulator BarA [Shigella boydii
CDC 3083-94]
gi|187767204|gb|EDU31048.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4196]
gi|188014881|gb|EDU53003.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4113]
gi|188487752|gb|EDU62855.1| sensor histidine kinase/response regulator BarA [Escherichia coli
53638]
gi|189003359|gb|EDU72345.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4076]
gi|189354721|gb|EDU73140.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4401]
gi|189363700|gb|EDU82119.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4486]
gi|189365501|gb|EDU83917.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4501]
gi|189372239|gb|EDU90655.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC869]
gi|189375500|gb|EDU93916.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC508]
gi|190901394|gb|EDV61158.1| sensor histidine kinase/response regulator BarA [Escherichia coli
B7A]
gi|192955579|gb|EDV86057.1| sensor histidine kinase/response regulator BarA [Escherichia coli
E110019]
gi|194415616|gb|EDX31883.1| sensor histidine kinase/response regulator BarA [Escherichia coli
B171]
gi|194421397|gb|EDX37413.1| sensor histidine kinase/response regulator BarA [Escherichia coli
101-1]
gi|208725454|gb|EDZ75055.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4206]
gi|208735449|gb|EDZ84136.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4045]
gi|208741062|gb|EDZ88744.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4042]
gi|209160321|gb|ACI37754.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. EC4115]
gi|209761428|gb|ACI79026.1| sensor-regulator protein barA [Escherichia coli]
gi|209761430|gb|ACI79027.1| sensor-regulator protein barA [Escherichia coli]
gi|209761432|gb|ACI79028.1| sensor-regulator protein barA [Escherichia coli]
gi|209761434|gb|ACI79029.1| sensor-regulator protein barA [Escherichia coli]
gi|209761436|gb|ACI79030.1| sensor-regulator protein barA [Escherichia coli]
gi|209913494|dbj|BAG78568.1| two-component sensor kinase [Escherichia coli SE11]
gi|217319809|gb|EEC28234.1| sensor histidine kinase/response regulator BarA [Escherichia coli
O157:H7 str. TW14588]
gi|218362105|emb|CAQ99714.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli IAI1]
gi|218433379|emb|CAR14281.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli UMN026]
gi|226839460|gb|EEH71481.1| signal transduction histidine-protein kinase BarA [Escherichia sp.
1_1_43]
gi|227834593|gb|EEJ45059.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972]
gi|238861442|gb|ACR63440.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli BW2952]
gi|254594128|gb|ACT73489.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli O157:H7 str. TW14359]
gi|257755545|dbj|BAI27047.1| hybrid sensory histidine kinase BarY, in two-component regulatory
system with UvrY [Escherichia coli O26:H11 str. 11368]
gi|257760579|dbj|BAI32076.1| hybrid sensory histidine kinase BarY, in two-component regulatory
system with UvrY [Escherichia coli O103:H2 str. 12009]
gi|260448163|gb|ACX38585.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1]
gi|290763988|gb|ADD57949.1| Signal transduction histidine-protein kinase barA [Escherichia coli
O55:H7 str. CB9615]
gi|291322202|gb|EFE61631.1| two-component system [Escherichia coli B088]
gi|291426284|gb|EFE99316.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412]
gi|291432222|gb|EFF05204.1| two-component system [Escherichia coli B185]
gi|291468905|gb|EFF11396.1| signal transduction histidine-protein kinase barA [Escherichia coli
B354]
gi|298277155|gb|EFI18671.1| two-component system [Escherichia coli FVEC1302]
gi|299879748|gb|EFI87959.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 196-1]
gi|300298688|gb|EFJ55073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 185-1]
gi|300315220|gb|EFJ65004.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 175-1]
gi|300358135|gb|EFJ74005.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 198-1]
gi|300394900|gb|EFJ78438.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 69-1]
gi|300401524|gb|EFJ85062.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 84-1]
gi|300410145|gb|EFJ93683.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 45-1]
gi|300420480|gb|EFK03791.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 182-1]
gi|300450174|gb|EFK13794.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 116-1]
gi|300526836|gb|EFK47905.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 119-7]
gi|300531726|gb|EFK52788.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 107-1]
gi|300840158|gb|EFK67918.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 124-1]
gi|300847476|gb|EFK75236.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 78-1]
gi|305854372|gb|EFM54810.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101]
gi|306907220|gb|EFN37726.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
gi|307554758|gb|ADN47533.1| sensor-regulator [Escherichia coli ABU 83972]
gi|308121223|gb|EFO58485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 145-7]
gi|308926210|gb|EFP71688.1| signal transduction histidine-protein kinase barA [Shigella
dysenteriae 1617]
gi|309703144|emb|CBJ02478.1| two-component sensor kinase/response regulator [Escherichia coli
ETEC H10407]
gi|310332940|gb|EFQ00154.1| signal transduction histidine-protein kinase barA [Escherichia coli
1827-70]
gi|315137393|dbj|BAJ44552.1| signal transduction histidine-protein kinase [Escherichia coli DH1]
gi|315256645|gb|EFU36613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 85-1]
gi|315293741|gb|EFU53093.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 153-1]
gi|315615172|gb|EFU95809.1| signal transduction histidine-protein kinase barA [Escherichia coli
3431]
gi|320189119|gb|EFW63778.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
EC1212]
gi|320202430|gb|EFW77000.1| hybrid sensory histidine kinase BarA [Escherichia coli EC4100B]
gi|320640434|gb|EFX09973.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
G5101]
gi|320645681|gb|EFX14666.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
493-89]
gi|320650981|gb|EFX19421.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
H 2687]
gi|320662373|gb|EFX29770.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
USDA 5905]
gi|320667071|gb|EFX34034.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
LSU-61]
gi|323154830|gb|EFZ41023.1| signal transduction histidine-protein kinase barA [Escherichia coli
EPECa14]
gi|323159899|gb|EFZ45869.1| signal transduction histidine-protein kinase barA [Escherichia coli
E128010]
gi|323167874|gb|EFZ53565.1| signal transduction histidine-protein kinase barA [Shigella sonnei
53G]
gi|323183325|gb|EFZ68722.1| signal transduction histidine-protein kinase barA [Escherichia coli
OK1357]
gi|323188798|gb|EFZ74083.1| signal transduction histidine-protein kinase barA [Escherichia coli
RN587/1]
gi|323935852|gb|EGB32155.1| hsp90-like protein [Escherichia coli E1520]
gi|323946491|gb|EGB42517.1| hsp90-like protein [Escherichia coli H120]
gi|323960696|gb|EGB56320.1| hsp90-like protein [Escherichia coli H489]
gi|323971612|gb|EGB66843.1| hsp90-like protein [Escherichia coli TA007]
gi|324005670|gb|EGB74889.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 57-2]
gi|324016361|gb|EGB85580.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 117-3]
gi|324119828|gb|EGC13707.1| hsp90-like protein [Escherichia coli E1167]
gi|326339142|gb|EGD62957.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
1044]
gi|326342975|gb|EGD66743.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
1125]
gi|331058277|gb|EGI30258.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA143]
gi|331063188|gb|EGI35101.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA271]
gi|331068373|gb|EGI39768.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA280]
gi|331073593|gb|EGI44914.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H591]
gi|331078021|gb|EGI49227.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H299]
gi|332092168|gb|EGI97246.1| signal transduction histidine-protein kinase barA [Shigella boydii
3594-74]
gi|332102899|gb|EGJ06245.1| hybrid sensory histidine kinase in two-component system response
regulatory system with UvrY [Shigella sp. D9]
gi|332344677|gb|AEE58011.1| signal transduction histidine-protein kinase BarA [Escherichia coli
UMNK88]
gi|338769207|gb|EGP23988.1| Signal transduction histidine-protein kinase BarA [Escherichia coli
PCN033]
gi|339416439|gb|AEJ58111.1| signal transduction histidine-protein kinase barA [Escherichia coli
UMNF18]
gi|341920145|gb|EGT69754.1| hypothetical protein C22711_3784 [Escherichia coli O104:H4 str.
C227-11]
gi|342362805|gb|EGU26919.1| hybrid sensory histidine kinase BarA [Escherichia coli XH140A]
gi|342929555|gb|EGU98277.1| sensor protein GacS [Escherichia coli MS 79-10]
gi|344194787|gb|EGV48859.1| hybrid sensory histidine kinase BarA [Escherichia coli XH001]
gi|345334137|gb|EGW66582.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_C165-02]
gi|345335731|gb|EGW68168.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_B2F1]
gi|345348964|gb|EGW81255.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_94C]
gi|345351904|gb|EGW84156.1| signal transduction histidine-protein kinase barA [Escherichia coli
3030-1]
gi|345356622|gb|EGW88823.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_DG131-3]
gi|345361276|gb|EGW93437.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_EH250]
gi|345371662|gb|EGX03631.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_MHI813]
gi|345374683|gb|EGX06634.1| signal transduction histidine-protein kinase barA [Escherichia coli
G58-1]
gi|345376217|gb|EGX08160.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_H.1.8]
gi|345386674|gb|EGX16507.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_S1191]
gi|345392356|gb|EGX22137.1| signal transduction histidine-protein kinase barA [Escherichia coli
TX1999]
gi|349739240|gb|AEQ13946.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli O7:K1 str. CE10]
gi|354862614|gb|EHF23052.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. C236-11]
gi|354867898|gb|EHF28320.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. C227-11]
gi|354868294|gb|EHF28712.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 04-8351]
gi|354873896|gb|EHF34273.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 09-7901]
gi|354880579|gb|EHF40915.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-3677]
gi|354888086|gb|EHF48348.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4404]
gi|354892321|gb|EHF52530.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4522]
gi|354893527|gb|EHF53730.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|354896330|gb|EHF56501.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4623]
gi|354897707|gb|EHF57864.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|354911559|gb|EHF71563.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|354913508|gb|EHF73498.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|354916465|gb|EHF76437.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|355421420|gb|AER85617.1| hybrid sensory histidine kinase BarA [Escherichia coli str. 'clone
D i2']
gi|355426340|gb|AER90536.1| hybrid sensory histidine kinase BarA [Escherichia coli str. 'clone
D i14']
gi|359333042|dbj|BAL39489.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli str. K-12 substr. MDS42]
gi|371602811|gb|EHN91499.1| signal transduction histidine-protein kinase BarA [Escherichia coli
E101]
gi|371615603|gb|EHO04002.1| signal transduction histidine-protein kinase BarA [Escherichia coli
B093]
gi|373247375|gb|EHP66821.1| signal transduction histidine-protein kinase BarA [Escherichia coli
4_1_47FAA]
gi|374360136|gb|AEZ41843.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
RM12579]
gi|375322210|gb|EHS67981.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H43
str. T22]
gi|377891362|gb|EHU55814.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3B]
gi|377892277|gb|EHU56723.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3A]
gi|377904102|gb|EHU68389.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3C]
gi|377908983|gb|EHU73192.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3D]
gi|377910406|gb|EHU74594.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3E]
gi|377920127|gb|EHU84160.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC3F]
gi|377924944|gb|EHU88885.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4A]
gi|377929085|gb|EHU92985.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4B]
gi|377940217|gb|EHV03967.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4D]
gi|377941040|gb|EHV04786.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4C]
gi|377946502|gb|EHV10182.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4E]
gi|377956356|gb|EHV19906.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC4F]
gi|377959511|gb|EHV23007.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5A]
gi|377972950|gb|EHV36294.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5C]
gi|377974233|gb|EHV37561.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC5D]
gi|377991362|gb|EHV54513.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC6B]
gi|377992727|gb|EHV55872.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC6A]
gi|377995053|gb|EHV58173.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC6C]
gi|378006136|gb|EHV69123.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC6D]
gi|378008496|gb|EHV71455.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC6E]
gi|378014457|gb|EHV77362.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC7A]
gi|378037565|gb|EHW00092.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC7E]
gi|378051660|gb|EHW13976.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8C]
gi|378059637|gb|EHW21836.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8D]
gi|378064239|gb|EHW26400.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8E]
gi|378072181|gb|EHW34244.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9A]
gi|378082392|gb|EHW44337.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9C]
gi|378088677|gb|EHW50527.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9D]
gi|378092939|gb|EHW54758.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC9E]
gi|378099009|gb|EHW60734.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10A]
gi|378104582|gb|EHW66240.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10B]
gi|378109245|gb|EHW70856.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10C]
gi|378114749|gb|EHW76300.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10D]
gi|378126569|gb|EHW87963.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10E]
gi|378128578|gb|EHW89960.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC11A]
gi|378129501|gb|EHW90872.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC10F]
gi|378140813|gb|EHX02036.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC11B]
gi|378147631|gb|EHX08778.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC11D]
gi|378149143|gb|EHX10270.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC11C]
gi|378156761|gb|EHX17807.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC11E]
gi|378167868|gb|EHX28779.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC12A]
gi|378184404|gb|EHX45040.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13A]
gi|378185762|gb|EHX46386.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC12E]
gi|378198506|gb|EHX58976.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13B]
gi|378199195|gb|EHX59663.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13C]
gi|378211505|gb|EHX71843.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13E]
gi|378215391|gb|EHX75688.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC14A]
gi|378218299|gb|EHX78571.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC14B]
gi|378226561|gb|EHX86747.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC14C]
gi|378230137|gb|EHX90264.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC14D]
gi|378235852|gb|EHX95907.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15A]
gi|378243985|gb|EHY03931.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15B]
gi|378245526|gb|EHY05463.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15C]
gi|378252996|gb|EHY12874.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15D]
gi|380347048|gb|EIA35337.1| hybrid sensory histidine kinase BarA [Escherichia coli SCI-07]
gi|383104214|gb|AFG41723.1| Signal transduction histidine-protein kinase barA [Escherichia coli
P12b]
gi|383475682|gb|EID67636.1| hybrid sensory histidine kinase BarA [Escherichia coli W26]
gi|384380634|gb|EIE38500.1| hybrid sensory histidine kinase BarA [Escherichia coli J53]
gi|384471837|gb|EIE55905.1| hybrid sensory histidine kinase BarA [Escherichia coli AI27]
gi|385155926|gb|EIF17926.1| hybrid sensory histidine kinase BarA [Escherichia coli O32:H37 str.
P4]
gi|385538413|gb|EIF85275.1| signal transduction histidine-protein kinase BarA [Escherichia coli
M919]
gi|385706992|gb|EIG44024.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H730]
gi|385710943|gb|EIG47915.1| signal transduction histidine-protein kinase BarA [Escherichia coli
B799]
gi|386121018|gb|EIG69636.1| signal transduction histidine-protein kinase BarA [Escherichia sp.
4_1_40B]
gi|386146823|gb|EIG93268.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0246]
gi|386149613|gb|EIH00902.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5.0588]
gi|386156368|gb|EIH12713.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0259]
gi|386160579|gb|EIH22390.1| signal transduction histidine-protein kinase BarA [Escherichia coli
1.2264]
gi|386167057|gb|EIH33577.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0497]
gi|386171695|gb|EIH43734.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0741]
gi|386179055|gb|EIH56534.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.2608]
gi|386182389|gb|EIH65147.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93.0624]
gi|386218615|gb|EII35098.1| signal transduction histidine-protein kinase BarA [Escherichia coli
4.0967]
gi|386223753|gb|EII46102.1| signal transduction histidine-protein kinase BarA [Escherichia coli
2.3916]
gi|386228294|gb|EII55650.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.3884]
gi|386236471|gb|EII68447.1| signal transduction histidine-protein kinase BarA [Escherichia coli
2.4168]
gi|386240156|gb|EII77081.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.2303]
gi|386245261|gb|EII86991.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3003]
gi|386253167|gb|EIJ02857.1| signal transduction histidine-protein kinase BarA [Escherichia coli
B41]
gi|386259197|gb|EIJ14671.1| signal transduction histidine-protein kinase BarA [Escherichia coli
900105 (10e)]
gi|386797424|gb|AFJ30458.1| hybrid sensory histidine kinase BarA [Escherichia coli Xuzhou21]
gi|388346005|gb|EIL11748.1| hybrid sensory histidine kinase BarA [Escherichia coli O103:H25
str. CVM9340]
gi|388346702|gb|EIL12412.1| hybrid sensory histidine kinase BarA [Escherichia coli O103:H2 str.
CVM9450]
gi|388347850|gb|EIL13499.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
str. CVM9545]
gi|388349614|gb|EIL15082.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
str. CVM9534]
gi|388371350|gb|EIL34831.1| signal transduction histidine-protein kinase barA [Escherichia coli
O26:H11 str. CVM10026]
gi|388375404|gb|EIL38422.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM9942]
gi|388385821|gb|EIL47487.1| hybrid sensory histidine kinase BarA [Escherichia coli KD2]
gi|388390514|gb|EIL52000.1| hybrid sensory histidine kinase BarA [Escherichia coli 541-15]
gi|388407778|gb|EIL68141.1| hybrid sensory histidine kinase BarA [Escherichia coli 576-1]
gi|388408036|gb|EIL68396.1| hybrid sensory histidine kinase BarA [Escherichia coli 541-1]
gi|388421400|gb|EIL81016.1| hybrid sensory histidine kinase BarA [Escherichia coli CUMT8]
gi|390640233|gb|EIN19697.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1996]
gi|390642084|gb|EIN21506.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA517]
gi|390642327|gb|EIN21728.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA505]
gi|390659209|gb|EIN36976.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93-001]
gi|390660301|gb|EIN38015.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1985]
gi|390662480|gb|EIN40076.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1990]
gi|390676099|gb|EIN52214.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA3]
gi|390679437|gb|EIN55337.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA5]
gi|390682668|gb|EIN58411.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA9]
gi|390694854|gb|EIN69410.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA10]
gi|390699653|gb|EIN73996.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA15]
gi|390699816|gb|EIN74156.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA14]
gi|390713413|gb|EIN86351.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA22]
gi|390720933|gb|EIN93634.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA25]
gi|390722641|gb|EIN95283.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA24]
gi|390726093|gb|EIN98570.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA28]
gi|390740520|gb|EIO11641.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA31]
gi|390741264|gb|EIO12342.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA32]
gi|390744198|gb|EIO15106.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA33]
gi|390757145|gb|EIO26634.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA40]
gi|390765799|gb|EIO34949.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA41]
gi|390766666|gb|EIO35781.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA39]
gi|390767309|gb|EIO36392.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA42]
gi|390780595|gb|EIO48295.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW06591]
gi|390788531|gb|EIO55997.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW07945]
gi|390788612|gb|EIO56077.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW10246]
gi|390795407|gb|EIO62691.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW11039]
gi|390803778|gb|EIO70768.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW09098]
gi|390806119|gb|EIO73041.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW09109]
gi|390814957|gb|EIO81506.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW10119]
gi|390824618|gb|EIO90580.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4203]
gi|390828071|gb|EIO93760.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW09195]
gi|390829780|gb|EIO95374.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4196]
gi|390844859|gb|EIP08556.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW14313]
gi|390845150|gb|EIP08831.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW14301]
gi|390849682|gb|EIP13104.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4421]
gi|390860333|gb|EIP22655.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4422]
gi|390869522|gb|EIP31154.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4402]
gi|390877342|gb|EIP38276.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4439]
gi|390882781|gb|EIP43263.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4436]
gi|390892198|gb|EIP51786.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4437]
gi|390894653|gb|EIP54151.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4448]
gi|390899379|gb|EIP58627.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1738]
gi|390907147|gb|EIP66016.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1734]
gi|390917874|gb|EIP76290.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1863]
gi|390919193|gb|EIP77550.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1845]
gi|391248457|gb|EIQ07698.1| signal transduction histidine-protein kinase BarA [Shigella
flexneri CCH060]
gi|391276228|gb|EIQ35001.1| signal transduction histidine-protein kinase BarA [Shigella boydii
4444-74]
gi|391279853|gb|EIQ38534.1| signal transduction histidine-protein kinase BarA [Shigella sonnei
3226-85]
gi|391293057|gb|EIQ51356.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella sonnei 4822-66]
gi|391299437|gb|EIQ57401.1| signal transduction histidine-protein kinase BarA [Shigella
dysenteriae 225-75]
gi|391304187|gb|EIQ62005.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EPECa12]
gi|391311367|gb|EIQ69003.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli EPEC C342-62]
gi|394384519|gb|EJE62078.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM10224]
gi|394407341|gb|EJE82203.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM10021]
gi|394417135|gb|EJE90885.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM10030]
gi|394421485|gb|EJE94952.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CVM9952]
gi|394423235|gb|EJE96499.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
str. CVM9455]
gi|397784145|gb|EJK95001.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_O31]
gi|404337681|gb|EJZ64132.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Shigella flexneri 1485-80]
gi|406776407|gb|AFS55831.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407052976|gb|AFS73027.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
2011C-3493]
gi|407066695|gb|AFS87742.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408063788|gb|EKG98277.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA7]
gi|408065699|gb|EKH00169.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK920]
gi|408068896|gb|EKH03310.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA34]
gi|408081542|gb|EKH15549.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA507]
gi|408096652|gb|EKH29587.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1999]
gi|408103042|gb|EKH35427.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK1997]
gi|408107798|gb|EKH39868.1| signal transduction histidine-protein kinase BarA [Escherichia coli
NE1487]
gi|408114265|gb|EKH45827.1| signal transduction histidine-protein kinase BarA [Escherichia coli
NE037]
gi|408120244|gb|EKH51268.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK2001]
gi|408126518|gb|EKH57078.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA4]
gi|408136590|gb|EKH66329.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA23]
gi|408139017|gb|EKH68651.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA49]
gi|408145320|gb|EKH74498.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA45]
gi|408153913|gb|EKH82283.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TT12B]
gi|408158859|gb|EKH86962.1| signal transduction histidine-protein kinase BarA [Escherichia coli
MA6]
gi|408162772|gb|EKH90659.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5905]
gi|408172251|gb|EKH99328.1| signal transduction histidine-protein kinase BarA [Escherichia coli
CB7326]
gi|408178874|gb|EKI05566.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC96038]
gi|408182067|gb|EKI08601.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5412]
gi|408200143|gb|EKI25331.1| signal transduction histidine-protein kinase BarA [Escherichia coli
ARS4.2123]
gi|408200665|gb|EKI25841.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW00353]
gi|408212150|gb|EKI36683.1| signal transduction histidine-protein kinase BarA [Escherichia coli
07798]
gi|408212422|gb|EKI36948.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3006]
gi|408216170|gb|EKI40503.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA38]
gi|408225968|gb|EKI49628.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1735]
gi|408227314|gb|EKI50911.1| signal transduction histidine-protein kinase BarA [Escherichia coli
N1]
gi|408237171|gb|EKI60036.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1736]
gi|408241161|gb|EKI63810.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1737]
gi|408245765|gb|EKI68117.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1846]
gi|408254274|gb|EKI75804.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1847]
gi|408258055|gb|EKI79343.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1848]
gi|408264624|gb|EKI85421.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1849]
gi|408273088|gb|EKI93154.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1850]
gi|408276129|gb|EKI96062.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1856]
gi|408284895|gb|EKJ03949.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1862]
gi|408290079|gb|EKJ08816.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1864]
gi|408295177|gb|EKJ13514.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1865]
gi|408306582|gb|EKJ23948.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1868]
gi|408306929|gb|EKJ24291.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1866]
gi|408317714|gb|EKJ33944.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1869]
gi|408323772|gb|EKJ39733.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC1870]
gi|408325471|gb|EKJ41346.1| signal transduction histidine-protein kinase BarA [Escherichia coli
NE098]
gi|408335590|gb|EKJ50428.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FRIK523]
gi|408342469|gb|EKJ56896.1| signal transduction histidine-protein kinase BarA [Escherichia coli
0.1288]
gi|408345283|gb|EKJ59625.1| signal transduction histidine-protein kinase BarA [Escherichia coli
0.1304]
gi|408548046|gb|EKK25431.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.4870]
gi|408548524|gb|EKK25908.1| signal transduction histidine-protein kinase BarA [Escherichia coli
5.2239]
gi|408549520|gb|EKK26880.1| signal transduction histidine-protein kinase BarA [Escherichia coli
6.0172]
gi|408565841|gb|EKK41922.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0566]
gi|408567143|gb|EKK43203.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0586]
gi|408577841|gb|EKK53391.1| signal transduction histidine-protein kinase BarA [Escherichia coli
10.0833]
gi|408580590|gb|EKK55994.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.2524]
gi|408590684|gb|EKK65158.1| signal transduction histidine-protein kinase BarA [Escherichia coli
10.0869]
gi|408595385|gb|EKK69620.1| signal transduction histidine-protein kinase BarA [Escherichia coli
88.0221]
gi|408600144|gb|EKK74003.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0416]
gi|421933984|gb|EKT91762.1| hybrid sensory histidine kinase BarA [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421934999|gb|EKT92722.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H11
str. CFSAN001630]
gi|427203307|gb|EKV73612.1| signal transduction histidine-protein kinase BarA [Escherichia coli
88.1042]
gi|427205489|gb|EKV75738.1| signal transduction histidine-protein kinase BarA [Escherichia coli
89.0511]
gi|427207034|gb|EKV77212.1| signal transduction histidine-protein kinase BarA [Escherichia coli
88.1467]
gi|427220126|gb|EKV89070.1| signal transduction histidine-protein kinase BarA [Escherichia coli
90.0091]
gi|427223281|gb|EKV92040.1| signal transduction histidine-protein kinase BarA [Escherichia coli
90.2281]
gi|427227217|gb|EKV95797.1| signal transduction histidine-protein kinase BarA [Escherichia coli
90.0039]
gi|427240440|gb|EKW07893.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93.0056]
gi|427240954|gb|EKW08400.1| signal transduction histidine-protein kinase BarA [Escherichia coli
93.0055]
gi|427259440|gb|EKW25478.1| signal transduction histidine-protein kinase BarA [Escherichia coli
95.0183]
gi|427260266|gb|EKW26257.1| signal transduction histidine-protein kinase BarA [Escherichia coli
95.0943]
gi|427278034|gb|EKW42530.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0427]
gi|427282211|gb|EKW46484.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0939]
gi|427290717|gb|EKW54175.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0932]
gi|427297718|gb|EKW60742.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0107]
gi|427299756|gb|EKW62725.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0003]
gi|427311257|gb|EKW73470.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.1742]
gi|427313962|gb|EKW76033.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0007]
gi|427318442|gb|EKW80309.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0672]
gi|427327059|gb|EKW88460.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0678]
gi|427328119|gb|EKW89487.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0713]
gi|429252638|gb|EKY37156.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0109]
gi|429254422|gb|EKY38839.1| signal transduction histidine-protein kinase BarA [Escherichia coli
97.0010]
gi|429347455|gb|EKY84228.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02092]
gi|429358491|gb|EKY95160.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02030]
gi|429360236|gb|EKY96895.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429360547|gb|EKY97205.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02093]
gi|429363915|gb|EKZ00540.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02318]
gi|429375470|gb|EKZ12004.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02281]
gi|429377878|gb|EKZ14393.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-03439]
gi|429389523|gb|EKZ25943.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-02913]
gi|429393357|gb|EKZ29752.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-03943]
gi|429403361|gb|EKZ39645.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. 11-04080]
gi|429405848|gb|EKZ42112.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429408729|gb|EKZ44964.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429413165|gb|EKZ49354.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429415894|gb|EKZ52052.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429419575|gb|EKZ55710.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429431054|gb|EKZ67104.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429435090|gb|EKZ71110.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429437316|gb|EKZ73323.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429442433|gb|EKZ78390.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429446583|gb|EKZ82511.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429450195|gb|EKZ86091.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429455952|gb|EKZ91799.1| signal transduction histidine-protein kinase BarA [Escherichia coli
O104:H4 str. Ec12-0466]
gi|430873601|gb|ELB97167.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE2]
gi|430892539|gb|ELC15030.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE10]
gi|430897420|gb|ELC19625.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE12]
gi|430904999|gb|ELC26680.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE16]
gi|430906226|gb|ELC27827.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE15]
gi|430917503|gb|ELC38550.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE21]
gi|430924508|gb|ELC45224.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE26]
gi|430934367|gb|ELC54734.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE39]
gi|430937515|gb|ELC57769.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE44]
gi|430951164|gb|ELC70384.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE187]
gi|430953840|gb|ELC72727.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE181]
gi|430961637|gb|ELC79644.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE188]
gi|430981090|gb|ELC97830.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE201]
gi|430987748|gb|ELD04271.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE204]
gi|431003133|gb|ELD18619.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE208]
gi|431005479|gb|ELD20501.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE210]
gi|431022493|gb|ELD35754.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE214]
gi|431037060|gb|ELD48048.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE220]
gi|431040423|gb|ELD50958.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE224]
gi|431049269|gb|ELD59231.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE228]
gi|431050612|gb|ELD60357.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE230]
gi|431062041|gb|ELD71323.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE233]
gi|431068035|gb|ELD76541.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE235]
gi|431091673|gb|ELD97383.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE51]
gi|431098918|gb|ELE04224.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE53]
gi|431113794|gb|ELE17443.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE56]
gi|431126361|gb|ELE28708.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE60]
gi|431136705|gb|ELE38561.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE67]
gi|431139789|gb|ELE41567.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE66]
gi|431146949|gb|ELE48372.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE72]
gi|431157851|gb|ELE58482.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE76]
gi|431168626|gb|ELE68864.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE80]
gi|431178665|gb|ELE78572.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE86]
gi|431179784|gb|ELE79675.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE83]
gi|431189367|gb|ELE88790.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE87]
gi|431189712|gb|ELE89131.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE93]
gi|431198063|gb|ELE96888.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE111]
gi|431199385|gb|ELE98137.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE116]
gi|431209192|gb|ELF07303.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE119]
gi|431213061|gb|ELF10980.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE142]
gi|431218935|gb|ELF16359.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE143]
gi|431220570|gb|ELF17903.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE156]
gi|431237647|gb|ELF32638.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE161]
gi|431242422|gb|ELF36842.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE169]
gi|431261396|gb|ELF53435.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE9]
gi|431273292|gb|ELF64378.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE45]
gi|431281082|gb|ELF71990.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE42]
gi|431290682|gb|ELF81217.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE43]
gi|431294964|gb|ELF85136.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE29]
gi|431306852|gb|ELF95157.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE46]
gi|431309142|gb|ELF97419.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE48]
gi|431313584|gb|ELG01556.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE50]
gi|431316940|gb|ELG04736.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE54]
gi|431327814|gb|ELG15134.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE63]
gi|431338008|gb|ELG25095.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE78]
gi|431350505|gb|ELG37316.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE79]
gi|431353386|gb|ELG40139.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE91]
gi|431360818|gb|ELG47417.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE101]
gi|431363120|gb|ELG49693.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE115]
gi|431383258|gb|ELG67382.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE135]
gi|431383769|gb|ELG67892.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE136]
gi|431393935|gb|ELG77481.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE141]
gi|431398319|gb|ELG81739.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE144]
gi|431403604|gb|ELG86881.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE146]
gi|431409184|gb|ELG92359.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE147]
gi|431415354|gb|ELG97899.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE158]
gi|431419055|gb|ELH01414.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE154]
gi|431430534|gb|ELH12365.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE194]
gi|431437617|gb|ELH19125.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE190]
gi|431451629|gb|ELH32100.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE184]
gi|431455466|gb|ELH35821.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE196]
gi|431462217|gb|ELH42434.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE183]
gi|431466340|gb|ELH46415.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE197]
gi|431468548|gb|ELH48481.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE203]
gi|431471699|gb|ELH51591.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE202]
gi|431480379|gb|ELH60099.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE207]
gi|431486960|gb|ELH66605.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE209]
gi|431498281|gb|ELH77494.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE215]
gi|431503993|gb|ELH82725.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE218]
gi|431507530|gb|ELH85815.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE223]
gi|431529470|gb|ELI06171.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE105]
gi|431550147|gb|ELI24144.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE113]
gi|431554840|gb|ELI28716.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE117]
gi|431563480|gb|ELI36692.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE120]
gi|431567870|gb|ELI40862.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE124]
gi|431568627|gb|ELI41599.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE122]
gi|431580078|gb|ELI52648.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE125]
gi|431581506|gb|ELI53954.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE128]
gi|431600413|gb|ELI70084.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE133]
gi|431603443|gb|ELI72868.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE137]
gi|431608841|gb|ELI78179.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE138]
gi|431617909|gb|ELI86898.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE145]
gi|431632648|gb|ELJ00935.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE153]
gi|431643053|gb|ELJ10757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE160]
gi|431644667|gb|ELJ12321.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE163]
gi|431655207|gb|ELJ22247.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE166]
gi|431658717|gb|ELJ25628.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE167]
gi|431660504|gb|ELJ27376.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE168]
gi|431669521|gb|ELJ35944.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE174]
gi|431676190|gb|ELJ42313.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE177]
gi|431699723|gb|ELJ64721.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE82]
gi|431704357|gb|ELJ68985.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE88]
gi|431714601|gb|ELJ78786.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE90]
gi|431729314|gb|ELJ92949.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE97]
gi|431733563|gb|ELJ96998.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE99]
gi|441605694|emb|CCP97502.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|441715703|emb|CCQ04506.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
Nissle 1917]
gi|444537109|gb|ELV17060.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0814]
gi|444546813|gb|ELV25479.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0815]
gi|444556641|gb|ELV34038.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0839]
gi|444557126|gb|ELV34489.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0816]
gi|444562213|gb|ELV39289.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0848]
gi|444571909|gb|ELV48365.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1753]
gi|444575459|gb|ELV51696.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1775]
gi|444578422|gb|ELV54484.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1793]
gi|444592035|gb|ELV67296.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA11]
gi|444592335|gb|ELV67594.1| signal transduction histidine-protein kinase BarA [Escherichia coli
ATCC 700728]
gi|444593831|gb|ELV69036.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1805]
gi|444605240|gb|ELV79882.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA13]
gi|444606024|gb|ELV80650.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA19]
gi|444614594|gb|ELV88820.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA2]
gi|444622251|gb|ELV96215.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA47]
gi|444623223|gb|ELV97158.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA48]
gi|444628714|gb|ELW02451.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA8]
gi|444637277|gb|ELW10651.1| signal transduction histidine-protein kinase BarA [Escherichia coli
7.1982]
gi|444640079|gb|ELW13368.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1781]
gi|444643837|gb|ELW16963.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.1762]
gi|444653528|gb|ELW26249.1| signal transduction histidine-protein kinase BarA [Escherichia coli
PA35]
gi|444658900|gb|ELW31337.1| signal transduction histidine-protein kinase BarA [Escherichia coli
3.4880]
gi|444662435|gb|ELW34689.1| signal transduction histidine-protein kinase BarA [Escherichia coli
95.0083]
gi|444669023|gb|ELW41021.1| signal transduction histidine-protein kinase BarA [Escherichia coli
99.0670]
gi|449316108|gb|EMD06230.1| hybrid sensory histidine kinase BarA [Escherichia coli O08]
gi|449319139|gb|EMD09195.1| hybrid sensory histidine kinase BarA [Escherichia coli SEPT362]
Length = 918
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|260869464|ref|YP_003235866.1| hybrid sensory histidine kinase BarY, in two-component regulatory
system with UvrY [Escherichia coli O111:H- str. 11128]
gi|417200225|ref|ZP_12017462.1| signal transduction histidine-protein kinase BarA [Escherichia coli
4.0522]
gi|417211723|ref|ZP_12022022.1| signal transduction histidine-protein kinase BarA [Escherichia coli
JB1-95]
gi|417593117|ref|ZP_12243810.1| signal transduction histidine-protein kinase barA [Escherichia coli
2534-86]
gi|419198371|ref|ZP_13741698.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC8A]
gi|419204688|ref|ZP_13747864.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8B]
gi|419886291|ref|ZP_14406932.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9570]
gi|419892903|ref|ZP_14412910.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9574]
gi|420092261|ref|ZP_14603975.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9602]
gi|420097786|ref|ZP_14609078.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9634]
gi|424773085|ref|ZP_18200166.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CFSAN001632]
gi|257765820|dbj|BAI37315.1| hybrid sensory histidine kinase BarY, in two-component regulatory
system with UvrY [Escherichia coli O111:H- str. 11128]
gi|345335209|gb|EGW67648.1| signal transduction histidine-protein kinase barA [Escherichia coli
2534-86]
gi|378045569|gb|EHW07963.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC8A]
gi|378046836|gb|EHW09209.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC8B]
gi|386188028|gb|EIH76841.1| signal transduction histidine-protein kinase BarA [Escherichia coli
4.0522]
gi|386195297|gb|EIH89533.1| signal transduction histidine-protein kinase BarA [Escherichia coli
JB1-95]
gi|388365496|gb|EIL29279.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9570]
gi|388369064|gb|EIL32684.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9574]
gi|394380563|gb|EJE58305.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9602]
gi|394383481|gb|EJE61081.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CVM9634]
gi|421937334|gb|EKT94951.1| hybrid sensory histidine kinase BarA [Escherichia coli O111:H8 str.
CFSAN001632]
Length = 918
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|421775443|ref|ZP_16212052.1| hybrid sensory histidine kinase BarA [Escherichia coli AD30]
gi|408459329|gb|EKJ83111.1| hybrid sensory histidine kinase BarA [Escherichia coli AD30]
Length = 918
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 TGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|417221179|ref|ZP_12024619.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.154]
gi|386200981|gb|EIH99971.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.154]
Length = 918
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|373954442|ref|ZP_09614402.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
paludis DSM 18603]
gi|373891042|gb|EHQ26939.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
paludis DSM 18603]
Length = 936
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 162/531 (30%), Positives = 263/531 (49%), Gaps = 82/531 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
++ AE A+ AKS FLAT+SHEIRTPMNGVLGM +L +T L+ Q++YV T + SG+ L+
Sbjct: 409 REDAEKANQAKSVFLATMSHEIRTPMNGVLGMASLLEETTLNNEQREYVSTIKNSGETLL 468
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+I++VLD +K+ESGKL+L+ FNLR +++V+ +FSGK G++L I VP +
Sbjct: 469 SVISDVLDFSKIESGKLDLDPHQFNLRQCIEEVMDIFSGKVARIGLDLVYQIGYEVPAHI 528
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD-SIEVETELSSSKNTLSGYPV 605
I D R +Q++ NL+GN+IKFT KG +F+ V L+ D S+E+ E+ K+T G P
Sbjct: 529 IADSLRLKQVLINLVGNAIKFTSKGEVFLGVSLLSRTDDHSLELAFEV---KDTGIGIP- 584
Query: 606 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665
R + FK F+ Q+
Sbjct: 585 --RDKLPRLFKAFS------------------------------------------QIDS 600
Query: 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQM 725
S +R +GG+G+GL+I + LV M+G+I S ++G+TF F S E + Q +
Sbjct: 601 STTRRYGGSGLGLAICERLVHLMEGQITVESQLDLGTTFRF--------SIKAEESQQDI 652
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII 785
V + +G LVVD K+ + +++ + + + + L+ +A I
Sbjct: 653 RLHVPYVLAGHEGKVILVVDDNQTNRKILQVQLEQWKLVPLMAASASEALTLLAKHR--I 710
Query: 786 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI 845
+++L + ++ + D + N +K+ ++ S A T G+ +V+
Sbjct: 711 DLVLTDMQMPDMDGIDFAAIIKNKN-------AKMPVVLLSSRGDEAKTKYPGL-FTAVL 762
Query: 846 MKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM-----SLRHLLLGRKILIVDDNNVNLK 900
KP++ L +Q ++ + + P + + +H L IL+ +DN +N K
Sbjct: 763 NKPVKQQQLGRVIQTSLQQNPEPEVHQQSTPVLLTPEFAEKHPL---NILVAEDNLINQK 819
Query: 901 VAAAGLKRYGAAVVCVERGKKA---TELLMPPHQFDACFMDIQMPEMDGYE 948
+ L + G + G + TEL H+FD MDIQMP MDG E
Sbjct: 820 LILRILSKLGYEATVAQNGLEVIALTEL----HKFDVILMDIQMPMMDGLE 866
>gi|415811652|ref|ZP_11503965.1| signal transduction histidine-protein kinase barA [Escherichia coli
LT-68]
gi|323172911|gb|EFZ58542.1| signal transduction histidine-protein kinase barA [Escherichia coli
LT-68]
Length = 918
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|433199479|ref|ZP_20383371.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE94]
gi|431719601|gb|ELJ83655.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE94]
Length = 918
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|194434684|ref|ZP_03066938.1| sensor histidine kinase/response regulator BarA [Shigella
dysenteriae 1012]
gi|417673505|ref|ZP_12322956.1| signal transduction histidine-protein kinase barA [Shigella
dysenteriae 155-74]
gi|194417081|gb|EDX33196.1| sensor histidine kinase/response regulator BarA [Shigella
dysenteriae 1012]
gi|332089100|gb|EGI94210.1| signal transduction histidine-protein kinase barA [Shigella
dysenteriae 155-74]
Length = 918
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|432486542|ref|ZP_19728453.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE212]
gi|433174664|ref|ZP_20359180.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE232]
gi|431014893|gb|ELD28464.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE212]
gi|431690483|gb|ELJ55963.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE232]
Length = 918
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|423104565|ref|ZP_17092267.1| signal transduction histidine-protein kinase BarA [Klebsiella
oxytoca 10-5242]
gi|376382528|gb|EHS95261.1| signal transduction histidine-protein kinase BarA [Klebsiella
oxytoca 10-5242]
Length = 917
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 171/526 (32%), Positives = 257/526 (48%), Gaps = 89/526 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNTTQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDS---IEVETELSSSKNTLSGY 603
IGDP R +QIITNLMGN+IKFTE G+I V LVE+ S +++E ++ +T G
Sbjct: 403 IGDPLRLQQIITNLMGNAIKFTEHGNIDV---LVEQRAISNSRVQIEVQI---HDTGIGI 456
Query: 604 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663
P D+ ++ F+ Q
Sbjct: 457 PERDQSRLFQAFR---------------------------------------------QA 471
Query: 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQ 723
SISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S
Sbjct: 472 DASISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISL 518
Query: 724 QMNNQ--PNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 780
+N P+SV ++ G K ++ A+ + + ++V V S + L
Sbjct: 519 DLNPNAVPDSVPTQCLAGKKLAYIEANAAAAQCTMELLATTPLEV-VYSPTMTALPDAH- 576
Query: 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVS 840
+++L V +D S + KL + L S DG++
Sbjct: 577 ----YDILLAGIPVSIRDLSQHRDKLERASKLADHL---VLALPCHAQVSAETLRHDGIA 629
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
+ ++KPL S+ L +L + + LP S L ++ VDDN NLK
Sbjct: 630 --ACLLKPLTSTRLLPALTASC------QTQPTVLPPRS-DSKKLPMTVMAVDDNPANLK 680
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+ A L+ V+ + G+ A E Q D MDIQMPEMDG
Sbjct: 681 LIGALLEDLVQHVILCDSGQHAVERARETQQ-DLILMDIQMPEMDG 725
>gi|312964948|ref|ZP_07779188.1| signal transduction histidine-protein kinase barA [Escherichia coli
2362-75]
gi|419030280|ref|ZP_13577436.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2C]
gi|419040966|ref|ZP_13587988.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2E]
gi|312290504|gb|EFR18384.1| signal transduction histidine-protein kinase barA [Escherichia coli
2362-75]
gi|377875657|gb|EHU40266.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2C]
gi|377888068|gb|EHU52540.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2E]
Length = 918
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|420348672|ref|ZP_14850054.1| signal transduction histidine-protein kinase BarA [Shigella boydii
965-58]
gi|391267713|gb|EIQ26644.1| signal transduction histidine-protein kinase BarA [Shigella boydii
965-58]
Length = 918
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|432628412|ref|ZP_19864384.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE77]
gi|431161705|gb|ELE62174.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE77]
Length = 918
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|416275346|ref|ZP_11643934.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae CDC
74-1112]
gi|320173230|gb|EFW48440.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae CDC
74-1112]
Length = 918
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|428997148|ref|ZP_19065746.1| signal transduction histidine-protein kinase BarA [Escherichia coli
94.0618]
gi|427244665|gb|EKW11978.1| signal transduction histidine-protein kinase BarA [Escherichia coli
94.0618]
Length = 918
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|15803307|ref|NP_289340.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
EDL933]
gi|25308230|pir||G85929 hypothetical protein barA [imported] - Escherichia coli (strain
O157:H7, substrain EDL933)
gi|12517258|gb|AAG57899.1|AE005506_7 sensor-regulator, activates OmpR by phophorylation [Escherichia
coli O157:H7 str. EDL933]
Length = 918
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTXTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|300920361|ref|ZP_07136798.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 115-1]
gi|432535150|ref|ZP_19772117.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE234]
gi|300412624|gb|EFJ95934.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 115-1]
gi|431059004|gb|ELD68380.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE234]
Length = 918
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|415818471|ref|ZP_11508193.1| signal transduction histidine-protein kinase barA [Escherichia coli
OK1180]
gi|323180217|gb|EFZ65769.1| signal transduction histidine-protein kinase barA [Escherichia coli
OK1180]
Length = 918
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|215488103|ref|YP_002330534.1| hybrid sensory histidine kinase BarA [Escherichia coli O127:H6 str.
E2348/69]
gi|417757042|ref|ZP_12405113.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2B]
gi|418998132|ref|ZP_13545722.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1A]
gi|419003361|ref|ZP_13550880.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1B]
gi|419008920|ref|ZP_13556344.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1C]
gi|419014706|ref|ZP_13562049.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC1D]
gi|419019732|ref|ZP_13567036.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1E]
gi|419025124|ref|ZP_13572347.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC2A]
gi|419035929|ref|ZP_13583012.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2D]
gi|215266175|emb|CAS10601.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli O127:H6 str. E2348/69]
gi|377842082|gb|EHU07137.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1A]
gi|377842275|gb|EHU07329.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1C]
gi|377845853|gb|EHU10872.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1B]
gi|377855388|gb|EHU20259.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC1D]
gi|377858892|gb|EHU23730.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC1E]
gi|377862482|gb|EHU27294.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC2A]
gi|377872420|gb|EHU37066.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2B]
gi|377878447|gb|EHU43034.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC2D]
Length = 918
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|419176305|ref|ZP_13720119.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC7B]
gi|378031511|gb|EHV94098.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC7B]
Length = 918
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|424539769|ref|ZP_17982713.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4013]
gi|425121070|ref|ZP_18522757.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0569]
gi|425273949|ref|ZP_18665354.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW15901]
gi|390864407|gb|EIP26515.1| signal transduction histidine-protein kinase BarA [Escherichia coli
EC4013]
gi|408192009|gb|EKI17597.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TW15901]
gi|408566832|gb|EKK42893.1| signal transduction histidine-protein kinase BarA [Escherichia coli
8.0569]
Length = 909
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 274 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 333
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 334 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 393
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 394 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 450
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 451 DQSRLFQAFR---------------------------------------------QADAS 465
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 466 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 525
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 526 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 582
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 583 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 614
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 615 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 665
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 666 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 717
>gi|432450921|ref|ZP_19693180.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE193]
gi|433034604|ref|ZP_20222308.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE112]
gi|430978655|gb|ELC95459.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE193]
gi|431548883|gb|ELI22975.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE112]
Length = 918
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|442596326|ref|ZP_21014139.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|441655338|emb|CCQ00052.1| BarA sensory histidine kinase (= VarS = GacS) [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
Length = 918
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|387608423|ref|YP_006097279.1| two-component sensor kinase/response regulator [Escherichia coli
042]
gi|284922723|emb|CBG35811.1| two-component sensor kinase/response regulator [Escherichia coli
042]
Length = 918
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|414577554|ref|ZP_11434729.1| signal transduction histidine-protein kinase BarA [Shigella sonnei
3233-85]
gi|391283087|gb|EIQ41710.1| signal transduction histidine-protein kinase BarA [Shigella sonnei
3233-85]
Length = 908
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 273 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 332
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 333 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 392
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 393 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 449
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 450 DQSRLFQAFR---------------------------------------------QADAS 464
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 465 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 524
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 525 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 581
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 582 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 613
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 614 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 664
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 665 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 716
>gi|375129950|ref|YP_004992049.1| sensor histidine kinase/response regulator [Vibrio furnissii NCTC
11218]
gi|315179123|gb|ADT86037.1| sensor histidine kinase/response regulator [Vibrio furnissii NCTC
11218]
Length = 915
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 173/601 (28%), Positives = 287/601 (47%), Gaps = 102/601 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L ++ I + ++ H I QAT + +E
Sbjct: 190 NMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 249
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 250 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 309
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + L++V++L + + +KG+E+
Sbjct: 310 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEI 369
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ + ++P L+GDP R +Q++TNL+GNSIKFTE+G+I ++V + + D +E++
Sbjct: 370 TLKVDPKIPAGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQRDDVVELQ---- 425
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
V DTG GI Q+
Sbjct: 426 --------------------------------------------FMVRDTGIGISERQQA 441
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV +M GEI S + GSTF FT
Sbjct: 442 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRL---- 497
Query: 715 STSNEHNSQQ-MNN--QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV---- 767
H ++ M++ P ++S + + L+V+P A + + + + G+ V
Sbjct: 498 -----HITEMPMSDWLDPKALSQK----QLLLVEPNMQAASIVQQLLVQAGLTVTYRSAM 548
Query: 768 --VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 825
SD + + SK ++ LVEQ W + + G S + +
Sbjct: 549 PEESDHFDYVLLNLAPSKETDVELVEQ--WVQRS--------------IGISSHVIIGTP 592
Query: 826 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL 885
S + A+ + I KPL L +L + ++ + + ++ ++ +
Sbjct: 593 STELALADLLMKQYPV-QCITKPLSRKKLLQTL-----IAHQPVVIDAPAQAVPVKQDKM 646
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
++ VDDN NLK+ A L+ AVV G+ A E H FD MDIQMP MD
Sbjct: 647 PLTVMAVDDNPANLKLITALLQERVEAVVSCTNGQDAIEQARQRH-FDIILMDIQMPHMD 705
Query: 946 G 946
G
Sbjct: 706 G 706
>gi|422970083|ref|ZP_16973876.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA124]
gi|371600461|gb|EHN89233.1| signal transduction histidine-protein kinase BarA [Escherichia coli
TA124]
Length = 918
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|422959542|ref|ZP_16971177.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H494]
gi|371595093|gb|EHN83946.1| signal transduction histidine-protein kinase BarA [Escherichia coli
H494]
Length = 918
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELAPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|260771270|ref|ZP_05880197.1| BarA sensory histidine kinase [Vibrio furnissii CIP 102972]
gi|260613867|gb|EEX39059.1| BarA sensory histidine kinase [Vibrio furnissii CIP 102972]
Length = 933
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 173/601 (28%), Positives = 287/601 (47%), Gaps = 102/601 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L ++ I + ++ H I QAT + +E
Sbjct: 208 NMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 267
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 268 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 327
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + L++V++L + + +KG+E+
Sbjct: 328 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEI 387
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ + ++P L+GDP R +Q++TNL+GNSIKFTE+G+I ++V + + D +E++
Sbjct: 388 TLKVDPKIPAGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVEMRSQRDDVVELQ---- 443
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
V DTG GI Q+
Sbjct: 444 --------------------------------------------FMVRDTGIGISERQQA 459
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV +M GEI S + GSTF FT
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRL---- 515
Query: 715 STSNEHNSQQ-MNN--QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV---- 767
H ++ M++ P ++S + + L+V+P A + + + + G+ V
Sbjct: 516 -----HITEMPMSDWLDPKALSQK----QLLLVEPNMQAASIVQQLLVQAGLTVTYRSAM 566
Query: 768 --VSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLAN 825
SD + + SK ++ LVEQ W + + G S + +
Sbjct: 567 PEESDHFDYVLLNLAPSKETDVELVEQ--WVQRS--------------IGISSHVIIGTP 610
Query: 826 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLL 885
S + A+ + I KPL L +L + ++ + + ++ ++ +
Sbjct: 611 STELALADLLMKQYPV-QCITKPLSRKKLLQTL-----IAHQPVVIDAPAQAVPVKQDKM 664
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
++ VDDN NLK+ A L+ AVV G+ A E H FD MDIQMP MD
Sbjct: 665 PLTVMAVDDNPANLKLITALLQERVEAVVSCTNGQDAIEQARQRH-FDIILMDIQMPHMD 723
Query: 946 G 946
G
Sbjct: 724 G 724
>gi|358638317|dbj|BAL25614.1| putative hybrid sensor and regulator protein [Azoarcus sp. KH32C]
Length = 1068
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 159/545 (29%), Positives = 260/545 (47%), Gaps = 79/545 (14%)
Query: 415 KVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+VE++ + + K AEAA+ AKS FLA +SHEIRTPMNG++GM ++++DT LD Q+++
Sbjct: 402 RVEQE---LQDAKLAAEAANQAKSDFLANMSHEIRTPMNGIIGMTELVLDTALDTGQREH 458
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
+ ++S ++L+ ++N++LD +K+E+GKL +E +SFNL + + L + ++ KG++L
Sbjct: 459 LEIVRSSAESLLVILNDILDFSKIEAGKLVVEHISFNLPLAISETLKCLAVRAGKKGLQL 518
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+S+ +P + GDPGR RQ++TNL N+IKFT+ G I ++ TE
Sbjct: 519 HCELSEDLPAYVSGDPGRLRQVLTNLCDNAIKFTDTGSI------------TVRATTEAG 566
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ + + VSV DTG GI + Q
Sbjct: 567 DDRHCV------------------------------------IHVSVADTGIGIGHDQQK 590
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA----VF 710
++F F Q S +R GG+G+GL+I LVG M G I S GSTF FT V
Sbjct: 591 KVFAAFDQADTSTTRKFGGSGLGLTICSRLVGLMGGRIWLESEIGRGSTFHFTVDMQRVA 650
Query: 711 GNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD 770
G G+ + S + + ALV D P + + ++ V+ +D
Sbjct: 651 GEGAV-----------GEALPPLSTWPDVPALVADGDPAQRRSLAQWLRAWSFTVDEAAD 699
Query: 771 QLQCLSQIAS---GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
Q L + + G +IL++ + D F +R G ++ +L+
Sbjct: 700 GHQALGKCRAAPPGECPYRVILIDSALPALD---GFGFAEAMRNEGRSADVQMVMLSARG 756
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
A + + + + + KP L +L R + + E P + RH L
Sbjct: 757 EKGDARRCRE-LGLAAYLSKPTTPLELRDTLTRVLAAREPDAVAGTE-PDLVTRHTLKEH 814
Query: 888 K----ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943
+ IL+V+D+ +N K+AA + +G V G +A +L P +D FMD+QMP
Sbjct: 815 QRHLSILLVEDHPINQKLAAELFEMWGHRVTLAANGHEAVDLF-PTMHWDIVFMDMQMPV 873
Query: 944 MDGYE 948
M G E
Sbjct: 874 MGGVE 878
>gi|419187571|ref|ZP_13731081.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC7D]
gi|419324368|ref|ZP_13866058.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC12B]
gi|419335858|ref|ZP_13877380.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC12D]
gi|378027489|gb|EHV90118.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC7D]
gi|378163583|gb|EHX24535.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC12B]
gi|378180734|gb|EHX41415.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC12D]
Length = 895
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 260 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 319
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 320 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 379
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 380 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 436
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 437 DQSRLFQAFR---------------------------------------------QADAS 451
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 452 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 511
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 512 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 568
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 569 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 600
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 601 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 651
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 652 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 703
>gi|239908302|ref|YP_002955043.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239798168|dbj|BAH77157.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 1011
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 175/582 (30%), Positives = 277/582 (47%), Gaps = 85/582 (14%)
Query: 382 APWPLLAISTSIGILVIASLVGHIFQATVNRI---AKVEEDYHGMMELKKKAEAADV--- 435
+PW + ++ + ++A L + +A +R+ +++E L+K EAA+
Sbjct: 315 SPWMMTFVAGGFSLALLAGL-WQLVRANSDRMKLAGRLDEQSRMNDVLQKAKEAAESGSR 373
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
AKS FLA SHEIRTPMNG++GM ++L+ T L Q ++VRT S L+++IN++LD
Sbjct: 374 AKSAFLANTSHEIRTPMNGIIGMCNLLLGTRLSDKQLEFVRTVHYSANTLMAVINDILDF 433
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+++GK LE + F+LR +L+ L + Q KGVEL + +S +P L GDP R +Q
Sbjct: 434 SKIDAGKFSLEIIEFDLRRVLNMTLRPLTIACQQKGVELILVVSPHMPVFLRGDPARLQQ 493
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
+I NL+GN+IKFTE+G + V V
Sbjct: 494 VINNLVGNAIKFTERGEVAVCV-------------------------------------- 515
Query: 616 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
F S S + + SV+DTG G+ + Q IF PF QV S++R GGTG
Sbjct: 516 ----------DFLSESDGVAYIRFSVKDTGIGMSPQQQEIIFKPFEQVDSSLTRRFGGTG 565
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735
+GL+IS +L+ M G++ S GS F F + P+ SS
Sbjct: 566 LGLAISSHLIELMGGQLSVESNLGKGSEFFFEIGLAVAEQAPRAYWV------PD--SSV 617
Query: 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI----ASGSKIINMILVE 791
G+ LVVD + R + VE D + L+ + A G+ I ++L +
Sbjct: 618 LDGLNVLVVDDHATNRAILRELLAGWKALVEEAKDGFEALTILKEHEAQGNP-IRLLLSD 676
Query: 792 QEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVI----MK 847
++ D + KL CG F+L ISSS+ +G PS++ +K
Sbjct: 677 LQMPGID---GLALAQRVEKL-CGSHPPAFIL---ISSSQ--IELEGGIAPSIVKDFLLK 727
Query: 848 PLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLLGRKILIVDDNNVNLKVAAAGL 906
P S + + + +G+ + +++ S + L G I++ +D+ VN +V + L
Sbjct: 728 PFDPSHVLDCV--LISLGHAVKMTQFQVESNIETVPLGEGLDIMVAEDSPVNQRVISHVL 785
Query: 907 KRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+ G + VE G++A L F+A MD+QMP MDG E
Sbjct: 786 HKMGHSFTIVENGQEAVT-LWEKRNFNAILMDVQMPIMDGIE 826
>gi|331654269|ref|ZP_08355269.1| signal transduction histidine-protein kinase BarA [Escherichia coli
M718]
gi|331047651|gb|EGI19728.1| signal transduction histidine-protein kinase BarA [Escherichia coli
M718]
Length = 918
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLPM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|127512132|ref|YP_001093329.1| hybrid sensory histidine kinase BarA [Shewanella loihica PV-4]
gi|126637427|gb|ABO23070.1| Hpt sensor hybrid histidine kinase [Shewanella loihica PV-4]
Length = 933
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 163/531 (30%), Positives = 250/531 (47%), Gaps = 88/531 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A A KS+FLA +SHE+RTP+NGV+G L+ T L +QQDY++T + S L+
Sbjct: 293 KKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHASQQDYIKTIEKSATNLL 352
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN++LD +K+E+GK+ELE + F LR ++DD +SL + +++K +EL V I + + +
Sbjct: 353 GIINDILDFSKLEAGKMELENMPFALREVIDDTISLLANSAKEKDLELVVDIEPSINDNV 412
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GD R Q+ITNL+GN+IKFT+ G + + + L E + + V E++ +G +
Sbjct: 413 SGDALRVSQVITNLVGNAIKFTDSGSVHLKMRLTSEEAEKVNVRCEITD-----TGIGI- 466
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ H + F+ F Q S S
Sbjct: 467 DKPHQAQLFQAFGQADS------------------------------------------S 484
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR GGTG+GL I+K L+ RM G+IG +S P GSTF FT +++
Sbjct: 485 ISRRFGGTGLGLIITKRLINRMGGQIGCISAPGKGSTFWFTLPL-------------KLS 531
Query: 727 NQPNSVSSEFQGM---KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIA--SG 781
P S E + L+ +PR + KV + G+Q + + L+++A G
Sbjct: 532 PYPISQPLETDNLIDKTVLLFEPRELSRKVHESLLSHWGMQ-NISITTAEDLARVAGEEG 590
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
I + D + S +N L K+ L+L +STD +
Sbjct: 591 RHFDYAI-----ISCNDLASSPNLLNVLNKIAKISDYTLYLC----------SSTDSAAK 635
Query: 842 PSVIMKPLRSSMLAASLQRAMGVG--NKGNIRNWELPSMSLRHLLLGRK---ILIVDDNN 896
S+I + M A +RA+ V N + +P R+ +L VDDN
Sbjct: 636 MSLIQPNVDKVMQAPVGERALAVTLINPHRAQYEAMPFQEAVKETQEREPMSVLAVDDNP 695
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
NLK+ LK V + G++A E + FD FMDIQMP DG+
Sbjct: 696 ANLKLIKTLLKELVTQVTVTDNGQEAVE-IAKAKSFDLIFMDIQMPGTDGF 745
>gi|296388021|ref|ZP_06877496.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PAb1]
gi|416881857|ref|ZP_11921716.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
152504]
gi|334835543|gb|EGM14411.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
152504]
Length = 918
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 167/551 (30%), Positives = 256/551 (46%), Gaps = 92/551 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + ++A + AKS+FLA +SHEIRTP+NGVLGML +L DT LD
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q YV T +SG AL+S+IN++LD A++ESGKL LE + F+L +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L + + VP L GDP R RQ++ NL+ N++KFT +GH+ V V
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ F++ G L+ SV D+G GI
Sbjct: 550 --------------------------RRFDESGRE-----------RLLYSVSDSGIGIS 572
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+AQ +F F Q S +R +GG+G+GL+IS+ LV M G I S P G+ F+
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632
Query: 710 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +Q + ++P ++SE L +D + ++R G++VE
Sbjct: 633 LSPALEAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679
Query: 769 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 822
+CL + + + +LV W S+ TL+ Q + L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728
Query: 823 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L + +G+ + + V +K LR ++L +R G E
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDE---- 784
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFM 937
L IL+ +DN VN V L + G AV G+ A E L P+ M
Sbjct: 785 ----RLDAPCILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840
Query: 938 DIQMPEMDGYE 948
D +MPEMDG+E
Sbjct: 841 DGEMPEMDGFE 851
>gi|238754497|ref|ZP_04615852.1| Signal transduction histidine-protein kinase barA [Yersinia ruckeri
ATCC 29473]
gi|238707326|gb|EEP99688.1| Signal transduction histidine-protein kinase barA [Yersinia ruckeri
ATCC 29473]
Length = 902
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 164/533 (30%), Positives = 249/533 (46%), Gaps = 101/533 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T L TQ DY++T Q S L+
Sbjct: 253 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLTPTQTDYLQTIQRSANNLL 312
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+ KL LE + F LR LD+V+ L + + +KG+EL + +++ VPE +
Sbjct: 313 SIINDVLDFSKLEAEKLVLEHIPFPLRETLDEVVILLAHTAHEKGLELTMQVNNDVPEQV 372
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R +Q++TNL+GN+IKFTE G++ + V L
Sbjct: 373 VGDSMRLQQVMTNLLGNAIKFTENGNVDIHVSL--------------------------- 405
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
R H+ + K L V ++DTG GI + QS++F F Q S
Sbjct: 406 -RSHTRRQIK--------------------LAVEIQDTGIGISEQQQSQLFQAFRQADAS 444
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST--FTFTAVFGNG--------SST 716
ISR HGGTG+GL I++ LV M G+I F S N GST F T G S
Sbjct: 445 ISRRHGGTGLGLVITERLVKEMDGDISFHSELNRGSTFRFHITLDLHEGMVYRQPTMESL 504
Query: 717 SNEHNSQ-QMNNQPNSVSSEFQGMKALVVDPRPIRAKVS--RYHIQRLGIQVEVVSDQLQ 773
+ +H + + N + + + L V P A+++ Y I LG+ + ++
Sbjct: 505 AGKHLAYVERNPAAAQATLDMLSITPLRVTHSPTLAQLADKHYDILLLGVPIPFRTNM-- 562
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
K+I + + +V S S + L++LG L +S++R
Sbjct: 563 ----AGHQDKLIAALKMADQVILALPSQSQIDAEQLKQLGAKA-----CLVKPVSANR-- 611
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
+ PL +L + KG+ LP +++ VD
Sbjct: 612 ------------LMPLLLKETPLALPAPVEPVTKGS----RLP----------LRVMAVD 645
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
DN NLK+ L+ + E G+ A + H D MDIQMPE+DG
Sbjct: 646 DNPANLKLIGTLLEEQVEETILCESGEAAIAIARD-HTLDVILMDIQMPEVDG 697
>gi|416899064|ref|ZP_11928546.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_7v]
gi|417119217|ref|ZP_11969582.1| signal transduction histidine-protein kinase BarA [Escherichia coli
1.2741]
gi|422780294|ref|ZP_16833079.1| hsp90-like protein [Escherichia coli TW10509]
gi|422800705|ref|ZP_16849202.1| hsp90-like protein [Escherichia coli M863]
gi|323966764|gb|EGB62195.1| hsp90-like protein [Escherichia coli M863]
gi|323978603|gb|EGB73685.1| hsp90-like protein [Escherichia coli TW10509]
gi|327251524|gb|EGE63210.1| signal transduction histidine-protein kinase barA [Escherichia coli
STEC_7v]
gi|386137570|gb|EIG78732.1| signal transduction histidine-protein kinase BarA [Escherichia coli
1.2741]
Length = 918
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLFPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|431928032|ref|YP_007241066.1| signal transduction histidine kinase [Pseudomonas stutzeri RCH2]
gi|431826319|gb|AGA87436.1| signal transduction histidine kinase [Pseudomonas stutzeri RCH2]
Length = 914
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 163/545 (29%), Positives = 267/545 (48%), Gaps = 83/545 (15%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + E ++A + + AKS+FLA +SHEIRTP+NGVLGML +L +T LD
Sbjct: 382 ADRINLLKEEGYRSREAAERAASENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPLDR 441
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
+QQ Y+ T +SG +L+++IN++LD A++ SGKL LE + F+L ++ + + LF+ +S +
Sbjct: 442 SQQFYLDTISSSGNSLMAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQSLE 501
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L V + VP + GDP R +QI+ NL+ N++KFTE GH+ + V
Sbjct: 502 KQLSLHVGLEPGVPRRIRGDPTRLKQILMNLLSNALKFTEHGHVLLEV------------ 549
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
S + T G P L+ V D+G G+
Sbjct: 550 -----SCRQTPDGGP-------------------------------RLVFCVSDSGIGMR 573
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
E +++F F Q S +R +GG+G+GL+ISK LV M G I S P GS F F
Sbjct: 574 QEVLAQLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSAPGRGSRFCFEIP 633
Query: 710 FGNGSSTSNEHNSQQMNNQPNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +Q + +P ++S+ QG++AL + ++R G++ E
Sbjct: 634 LRTATDVEDPL-TQLLAGRPALLASQDAQGLEAL------------SHLLRRWGMRTE-- 678
Query: 769 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLA 824
+CL+ + + +LV W S ++ LR Q ++ +L
Sbjct: 679 ----RCLTPDRLPDYLADFTAPPLLVLLAPWPGSPSQ---WLERLRPYLEANQ-RMLMLY 730
Query: 825 NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL 884
+ I T + + S+ + PL+S+ L +LQ + + ++ E S+ L
Sbjct: 731 SPIHEP--PPLTPDLRLISLAL-PLQSAPLREALQ---ALYEREPAQSAETDKASIAPLQ 784
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPHQFDACFMDIQMPE 943
IL+ +DN VN V LK+ G AV + G++A +L P MD +MPE
Sbjct: 785 SEPCILVAEDNPVNQMVVRGLLKKRGYAVQLADNGRQAVDLYRRDPDAVQLILMDCEMPE 844
Query: 944 MDGYE 948
+DG+E
Sbjct: 845 LDGFE 849
>gi|262170598|ref|ZP_06038276.1| BarA sensory histidine kinase [Vibrio mimicus MB-451]
gi|261891674|gb|EEY37660.1| BarA sensory histidine kinase [Vibrio mimicus MB-451]
Length = 916
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 177/599 (29%), Positives = 281/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L ++ I + ++ H I QAT + +E
Sbjct: 198 NMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 257
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 258 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQTDY 317
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 318 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 377
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 378 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 422
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 423 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 449
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF F
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWF-------- 501
Query: 715 STSNEHNSQ-QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
T H ++ MN+ ++ L+++P A + + + + G++V + +
Sbjct: 502 -TLRLHTTELPMNDGYDANLLNH--RHLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 558
Query: 771 QLQCLSQIA---SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ Q + + SK N LVE +W + T + G S LA+ +
Sbjct: 559 EEQVYDYVLLNLAPSKETNPTLVE--LWVQRALAMT------HNVIVGVPSTELALADQL 610
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 611 MQRYP---------VKCIGKPLSRKKLLQTL-----AAQQPQLSNPSLPKPQADKLPLC- 655
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E H FD MDIQMP MDG
Sbjct: 656 -VMAVDDNPANLKLITALLQERVECVVACISGQEAIEQAQIRH-FDIILMDIQMPHMDG 712
>gi|434394295|ref|YP_007129242.1| multi-sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
gi|428266136|gb|AFZ32082.1| multi-sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
Length = 1873
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 130/340 (38%), Positives = 185/340 (54%), Gaps = 60/340 (17%)
Query: 428 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVS 487
++AE A AKS FLA +SHEIRTPMN VLGM +L+DT L Q+D+++T + SG AL+S
Sbjct: 1147 RQAELASQAKSSFLANMSHEIRTPMNAVLGMTGLLLDTPLTPEQRDFLQTIRTSGDALLS 1206
Query: 488 LINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLI 547
LINE+LD +K+E+G++ELE ++F+L +D+VL L + ++ K VE+A I VP L
Sbjct: 1207 LINEILDLSKLEAGEMELETLNFDLSTCIDEVLELLAPQAHTKNVEIAGLIYRNVPTCLQ 1266
Query: 548 GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVAD 607
GD GR RQ++TNL+ N+IKFT G EVV S E+++E S++
Sbjct: 1267 GDAGRLRQVLTNLINNAIKFTSNG----------EVVVSAELQSETSTTA---------- 1306
Query: 608 RCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667
+ +V DTG GI LE Q +F+PF QV S
Sbjct: 1307 ----------------------------RIRFTVADTGIGISLEDQHNLFSPFTQVDAST 1338
Query: 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN- 726
+R +GGTG+GL+I + LV M GEIG S +GS F F F ++Q++
Sbjct: 1339 TRKYGGTGLGLAICRQLVTLMGGEIGVESQVGLGSKFWFEIPF-----------TKQIDL 1387
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 766
QP + ++ LVVD KV + R G+ V+
Sbjct: 1388 IQPIQGLQDLPNLRLLVVDDNATNRKVIYHQATRWGMHVD 1427
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
+P ++ + + + A + + N I PS R+ KIL+ +DN +N K
Sbjct: 1576 VPYKLLNTIMTRLEAQTELNRLSSANNHAIAPQLPPSTESRNRKSKLKILLAEDNLINQK 1635
Query: 901 VAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
VA L+ G G++ EL+ +P +D MD QMP +DG
Sbjct: 1636 VALKQLQALGYTADVAANGQEVLELIEKIP---YDLILMDCQMPILDG 1680
>gi|419137930|ref|ZP_13682721.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC5E]
gi|377982350|gb|EHV45602.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC5E]
Length = 762
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 127 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 186
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 187 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 246
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 247 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 303
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 304 DQSRLFQAFR---------------------------------------------QADAS 318
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 319 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 378
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 379 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 435
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 436 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 467
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 468 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 518
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 519 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 570
>gi|417806315|ref|ZP_12453259.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
LB226692]
gi|417834069|ref|ZP_12480515.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
01-09591]
gi|340733065|gb|EGR62197.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
01-09591]
gi|340739048|gb|EGR73285.1| hybrid sensory histidine kinase BarA [Escherichia coli O104:H4 str.
LB226692]
Length = 811
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 176 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 235
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 236 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 295
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 296 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 352
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 353 DQSRLFQAFR---------------------------------------------QADAS 367
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 368 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 427
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 428 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 484
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 485 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 516
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 517 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 567
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 568 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 619
>gi|238758178|ref|ZP_04619357.1| Signal transduction histidine-protein kinase barA [Yersinia aldovae
ATCC 35236]
gi|238703508|gb|EEP96046.1| Signal transduction histidine-protein kinase barA [Yersinia aldovae
ATCC 35236]
Length = 937
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 160/527 (30%), Positives = 246/527 (46%), Gaps = 89/527 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T L TQ DY++T Q S L+
Sbjct: 299 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLTPTQTDYLQTIQRSANNLL 358
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN+VLD +K+E+ KL LE + F+LR LD+V+ L + + +KG+EL +++++ VPE +
Sbjct: 359 CIINDVLDFSKLEAEKLILEHIPFSLRGALDEVVILLAHTAHEKGLELTLHVNNDVPEQV 418
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GD R +QI+TNL+GN+IKFTE+G+I + V +
Sbjct: 419 VGDAMRLQQIVTNLLGNAIKFTEQGNIDILVAV--------------------------- 451
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
++ ++ + L+V + DTG GI Q+++F F Q S
Sbjct: 452 ---------------------RAIASQQVTLVVEIHDTGIGISESQQAQLFQAFRQADAS 490
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S + GSTF F + + H
Sbjct: 491 ISRRHGGTGLGLVITERLVKEMGGDISFHSQVDRGSTFRFYITLDLNDTIAYRH------ 544
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
P+ E + + + + RA + + L I L+Q+ + +
Sbjct: 545 --PDMSRLEGKTLAYIERNAAAARATLDLLSVTPLQIT------HSPTLAQLPAQHYDFS 596
Query: 787 MILVEQEVWEKDTSVSTLFVNNLR----KLGCGFQ-SKLFLLANSISSSRANTSTDGVSI 841
++ V F NN+ KL + + +LA S +
Sbjct: 597 LV-----------GVPIPFRNNMAVHQDKLMAALKIADRVILALPSQSQVEAEQLKQIGA 645
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL--LGRKILIVDDNNVNL 899
+ ++KPL S+ L L ELP + H L L K++ VDDN NL
Sbjct: 646 KACLVKPLSSNRLIPLL--------LSEDTPCELPLLEQPHKLPKLPFKVMAVDDNPANL 697
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K+ L+ V + G KA + D MDIQMPE+DG
Sbjct: 698 KLIGTLLEELVEETVLCDSGAKAIAYAR-ENTLDIILMDIQMPEIDG 743
>gi|417237135|ref|ZP_12035102.1| signal transduction histidine-protein kinase BarA [Escherichia coli
9.0111]
gi|386214220|gb|EII24643.1| signal transduction histidine-protein kinase BarA [Escherichia coli
9.0111]
Length = 918
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSVLPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|424807657|ref|ZP_18233065.1| sensor histidine kinase/response regulator [Vibrio mimicus SX-4]
gi|342325599|gb|EGU21379.1| sensor histidine kinase/response regulator [Vibrio mimicus SX-4]
Length = 916
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 177/599 (29%), Positives = 281/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L ++ I + ++ H I QAT + +E
Sbjct: 198 NMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 257
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 258 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQTDY 317
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 318 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 377
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 378 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 422
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 423 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 449
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF F
Sbjct: 450 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWF-------- 501
Query: 715 STSNEHNSQ-QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
T H ++ MN+ ++ L+++P A + + + + G++V + +
Sbjct: 502 -TLRLHTTELPMNDGYDANLLNH--RHLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 558
Query: 771 QLQCLSQIA---SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ Q + + SK N LVE +W + T + G S LA+ +
Sbjct: 559 EEQVYDYVLLNLAPSKETNPTLVE--LWVQRALAMT------HNVIVGVPSTELALADQL 610
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 611 MQRYP---------VKCIGKPLSRKKLLQTL-----AAQQPPLSNPSLPKPQADKLPLC- 655
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E H FD MDIQMP MDG
Sbjct: 656 -VMAVDDNPANLKLITALLQERVECVVACTSGQEAIEQAQIRH-FDIILMDIQMPHMDG 712
>gi|116051482|ref|YP_789685.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
UCBPP-PA14]
gi|421173312|ref|ZP_15631061.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CI27]
gi|115586703|gb|ABJ12718.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
UCBPP-PA14]
gi|404535931|gb|EKA45588.1| sensor/response regulator hybrid [Pseudomonas aeruginosa CI27]
Length = 918
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 167/551 (30%), Positives = 256/551 (46%), Gaps = 92/551 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + ++A + AKS+FLA +SHEIRTP+NGVLGML +L DT LD
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q YV T +SG AL+S+IN++LD A++ESGKL LE + F+L +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L + + VP L GDP R RQ++ NL+ N++KFT +GH+ V V
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ F++ G L+ SV D+G GI
Sbjct: 550 --------------------------RRFDEGGRE-----------RLLYSVSDSGIGIS 572
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+AQ +F F Q S +R +GG+G+GL+IS+ LV M G I S P G+ F+
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632
Query: 710 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +Q + ++P ++SE L +D + ++R G++VE
Sbjct: 633 LSPALEAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679
Query: 769 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 822
+CL + + + +LV W S+ TL+ Q + L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728
Query: 823 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L + +G+ + + V +K LR ++L +R G E
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDE---- 784
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFM 937
L IL+ +DN VN V L + G AV G+ A E L P+ M
Sbjct: 785 ----RLDAPCILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840
Query: 938 DIQMPEMDGYE 948
D +MPEMDG+E
Sbjct: 841 DGEMPEMDGFE 851
>gi|386285896|ref|ZP_10063102.1| PAS/PAC domain-containing protein, partial [gamma proteobacterium
BDW918]
gi|385281049|gb|EIF44955.1| PAS/PAC domain-containing protein, partial [gamma proteobacterium
BDW918]
Length = 831
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 158/537 (29%), Positives = 261/537 (48%), Gaps = 76/537 (14%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+M+ K AE A K +FLA +SHEIRTPMN VLGML++L T++ Q DYV A +
Sbjct: 85 LMKAKAMAEEASKTKGEFLANMSHEIRTPMNAVLGMLNLLKYTDMTNRQLDYVSKASGAA 144
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
+AL+ +IN++LD +K+E+GKL LE F++ IL D+ + S DK VE+ I V
Sbjct: 145 EALLGIINDILDFSKIEAGKLLLEKRPFSIDEILKDIAVILSMNISDKNVEILFNIDPAV 204
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P+T++GD R +QI+ NL GN++KFTE+G + ++V++ E +S+ +
Sbjct: 205 PKTVLGDSLRIKQILINLAGNAVKFTEQGEVMLSVFVQHERSNSMVL------------- 251
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
GFK V DTG G+ + Q R+F F Q
Sbjct: 252 -----------GFK------------------------VSDTGIGMSADQQKRVFESFTQ 276
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
+ +R GGTG+GL I + L+ M GE+ S GSTF+F+ + + +
Sbjct: 277 AEAATTRRFGGTGLGLVICQRLIRLMGGELEVESEEGKGSTFSFSLIIEPVEDGALREPA 336
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIA 779
++ ++ E++ ++ LV+D ++ Q LG +VE L+ + +
Sbjct: 337 RR------ALPVEYENLRLLVLDDNAHAREIIAGICQNLGWEVEEAESGNIGLELIKRSL 390
Query: 780 SGSKIINMILVE-----QEVWEKDTSVSTLFVNNLRK---LGCGFQSKLFLLANSISSSR 831
+K +++ ++ + W+ +++ L + L + G ++F
Sbjct: 391 LEAKPYDIVFIDWMMPGLDGWQTASAIQALCADTLTPRLVMVTGHAKEVF----EQQEDA 446
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILI 891
+T+ DG +MKP+ +S + ++ A+ + S + L+G +IL+
Sbjct: 447 ISTALDG-----FLMKPVTASDIYNTIIEALA-DKSAEYKTGIQQSKATNDGLVGMRILL 500
Query: 892 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QFDACFMDIQMPEMDGY 947
V+DN N +VA L GA +V + G+ A + + FDA MDIQMP MDGY
Sbjct: 501 VEDNITNQQVARELLAIEGAEIVVADNGQIALDSIRHAKLPFDAVLMDIQMPVMDGY 557
>gi|302121697|gb|ADK92863.1| histidine kinase 2 [Hypericum perforatum]
Length = 185
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 98/153 (64%), Positives = 120/153 (78%)
Query: 347 MYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGHIF 406
MYG +V D L +S L+FGDP R+HEMRCRFKQKA P AI+ S + +I LVGHIF
Sbjct: 1 MYGCDVIDTDLIHLSNLDFGDPSRRHEMRCRFKQKASLPWTAINASTTVFIITVLVGHIF 60
Query: 407 QATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE 466
A + RI KVE D H M+EL +A+AA+VAKS+FLATVSHEIRT MNGVLGML MLMDTE
Sbjct: 61 HAAIKRIVKVEADCHKMLELTVRAKAANVAKSKFLATVSHEIRTSMNGVLGMLQMLMDTE 120
Query: 467 LDVTQQDYVRTAQASGKALVSLINEVLDQAKVE 499
LD +Q+DY +TA ASG+ L+SL+N+VLDQAK++
Sbjct: 121 LDTSQEDYAKTAHASGRELISLMNDVLDQAKIK 153
>gi|283778609|ref|YP_003369364.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
gi|283437062|gb|ADB15504.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
Length = 1314
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 160/547 (29%), Positives = 253/547 (46%), Gaps = 98/547 (17%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQ 495
AKS FLA +SHEIRTP+NGV+GML++L T LD Q YV A++S L+ LIN+VLD
Sbjct: 599 AKSAFLANMSHEIRTPLNGVIGMLELLGTTTLDERQNRYVHIARSSAGTLLGLINDVLDF 658
Query: 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQ 555
+K+E+GKLELE V F+L ++L+DV +FS ++ +KG+EL+ I VP + GDP R RQ
Sbjct: 659 SKIEAGKLELERVQFDLHSLLEDVAEMFSHRANEKGLELSCRILPGVPTNVYGDPERIRQ 718
Query: 556 IITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGF 615
++ NL+ N+IKFT++G + + E+ V S V S +T G P ADR
Sbjct: 719 VLINLVNNAIKFTKQGEV---ILRAEQQVHSSGVSRMRISVIDTGIGIP-ADR------- 767
Query: 616 KTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
S++F PF QV S +R +GGTG
Sbjct: 768 -------------------------------------SSQLFAPFTQVDASTTRKYGGTG 790
Query: 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNS-VSS 734
+GL+I + L+ M G +G S+ GSTF Q+N P S V+
Sbjct: 791 LGLAICRQLIELMGGRVGVDSVEGNGSTFWCEVPL----------EVAQVNTAPRSPVAE 840
Query: 735 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG---SKIINMILVE 791
+G+ L VD ++ + G++V D LQ L+Q+ + K +++++
Sbjct: 841 TLRGLAVLTVDDTDTNLEILHDQLTSWGMRVTAARDGLQALAQLRTAVRSGKKYPLVILD 900
Query: 792 QEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRS 851
++ E D L + K + L+ S+ + + + V+ KP+R
Sbjct: 901 HQMPEMD----GLQLAAAIKGDALLRDTNLLMLTSVDQLVDRSKWSSLGLAGVMTKPIRQ 956
Query: 852 SMLAASLQRAM-------GVGNKGNIRNWELPSMSLRHLLL------------------- 885
S L ++ + + + + P+ + ++L
Sbjct: 957 SRLFDAIAGVLKHQESLPALPDSDSSATLPAPAAPTKPVMLREVASAPAYSRTEGATPQE 1016
Query: 886 -----GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQ 940
G K+L+ +DN +N V + L+ G A V G +A + L+ + MD Q
Sbjct: 1017 ILAQCGLKLLVAEDNEINQMVTSEILRGSGYACDVVSNGNQAIDALV-RGGYALVLMDCQ 1075
Query: 941 MPEMDGY 947
MPE+DG+
Sbjct: 1076 MPELDGF 1082
>gi|386057570|ref|YP_005974092.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
M18]
gi|347303876|gb|AEO73990.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
M18]
Length = 918
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 167/551 (30%), Positives = 256/551 (46%), Gaps = 92/551 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + ++A + AKS+FLA +SHEIRTP+NGVLGML +L DT LD
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q YV T +SG AL+S+IN++LD A++ESGKL LE + F+L +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L + + VP L GDP R RQ++ NL+ N++KFT +GH+ V V
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ F++ G L+ SV D+G GI
Sbjct: 550 --------------------------RRFDEGGRE-----------RLLYSVSDSGIGIS 572
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+AQ +F F Q S +R +GG+G+GL+IS+ LV M G I S P G+ F+
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632
Query: 710 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +Q + ++P ++SE L +D + ++R G++VE
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679
Query: 769 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 822
+CL + + + +LV W S+ TL+ Q + L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728
Query: 823 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L + +G+ + + V +K LR ++L +R G E
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDE---- 784
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFM 937
L IL+ +DN VN V L + G AV G+ A E L P+ M
Sbjct: 785 ----RLDAPCILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840
Query: 938 DIQMPEMDGYE 948
D +MPEMDG+E
Sbjct: 841 DGEMPEMDGFE 851
>gi|424942841|ref|ZP_18358604.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
NCMG1179]
gi|346059287|dbj|GAA19170.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
NCMG1179]
Length = 918
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 167/551 (30%), Positives = 256/551 (46%), Gaps = 92/551 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + ++A + AKS+FLA +SHEIRTP+NGVLGML +L DT LD
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q YV T +SG AL+S+IN++LD A++ESGKL LE + F+L +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L + + VP L GDP R RQ++ NL+ N++KFT +GH+ V V
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ F++ G L+ SV D+G GI
Sbjct: 550 --------------------------RRFDEGGRE-----------RLLYSVSDSGIGIS 572
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+AQ +F F Q S +R +GG+G+GL+IS+ LV M G I S P G+ F+
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632
Query: 710 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +Q + ++P ++SE L +D + ++R G++VE
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679
Query: 769 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 822
+CL + + + +LV W S+ TL+ Q + L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728
Query: 823 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L + +G+ + + V +K LR ++L +R G E
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDE---- 784
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFM 937
L IL+ +DN VN V L + G AV G+ A E L P+ M
Sbjct: 785 ----RLDAPCILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840
Query: 938 DIQMPEMDGYE 948
D +MPEMDG+E
Sbjct: 841 DGEMPEMDGFE 851
>gi|343508974|ref|ZP_08746271.1| hybrid sensory histidine kinase BarA [Vibrio scophthalmi LMG 19158]
gi|342806040|gb|EGU41281.1| hybrid sensory histidine kinase BarA [Vibrio scophthalmi LMG 19158]
Length = 929
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 175/596 (29%), Positives = 279/596 (46%), Gaps = 93/596 (15%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 208 NMVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 267
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 268 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTKLSNSQTDY 327
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + L++V+SL + + +KG+E+
Sbjct: 328 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQETLEEVVSLQATSAHEKGLEI 387
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I +VP L+GDP R +Q++TNL+GNSIKFTE+G+I ++V L + D +E++
Sbjct: 388 TLKIDPKVPIGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVELRSQKEDVVELQ---- 443
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
V DTG GI Q+
Sbjct: 444 --------------------------------------------FMVRDTGIGISERQQA 459
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV +M GEI S + GSTF FT
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLHATD 519
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQ 771
+E Q+ NQ L+V+P A ++R + + G+ V S D+
Sbjct: 520 MPMSELIESQVLNQ----------RSLLLVEPNMQAASITRQTLAQQGLVVTYRSSMPDE 569
Query: 772 LQCLSQIASGSKIINMIL-VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
++ + ++N+ EV + + V + + + L L + I
Sbjct: 570 VETFDYV-----LLNLAPNRSNEVGKVEKQVEQALLCAPHVVVGTPSTALALSDHLIQKY 624
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
+ + T KPL L +L N+ ++ E+ + + L ++
Sbjct: 625 QIHCVT----------KPLSRKKLLQTL-----AANQESLPEIEI-EIPINTETLPLTVM 668
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VDDN NLK+ +A L V+ GK A + H FD MDIQMP MDG
Sbjct: 669 AVDDNPANLKLISALLDERVEHVITCTNGKDAVKQAEQRH-FDIILMDIQMPHMDG 723
>gi|313108820|ref|ZP_07794805.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
39016]
gi|386067505|ref|YP_005982809.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
NCGM2.S1]
gi|310881307|gb|EFQ39901.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
39016]
gi|348036064|dbj|BAK91424.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
NCGM2.S1]
Length = 918
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 167/551 (30%), Positives = 256/551 (46%), Gaps = 92/551 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + ++A + AKS+FLA +SHEIRTP+NGVLGML +L DT LD
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q YV T +SG AL+S+IN++LD A++ESGKL LE + F+L +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L + + VP L GDP R RQ++ NL+ N++KFT +GH+ V V
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ F++ G L+ SV D+G GI
Sbjct: 550 --------------------------RRFDEGGRE-----------RLLYSVSDSGIGIS 572
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+AQ +F F Q S +R +GG+G+GL+IS+ LV M G I S P G+ F+
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632
Query: 710 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +Q + ++P ++SE L +D + ++R G++VE
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679
Query: 769 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 822
+CL + + + +LV W S+ TL+ Q + L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728
Query: 823 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L + +G+ + + V +K LR ++L +R G E
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDE---- 784
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFM 937
L IL+ +DN VN V L + G AV G+ A E L P+ M
Sbjct: 785 ----RLDAPCILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840
Query: 938 DIQMPEMDGYE 948
D +MPEMDG+E
Sbjct: 841 DGEMPEMDGFE 851
>gi|423141457|ref|ZP_17129095.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|379050629|gb|EHY68521.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
Length = 918
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 162/536 (30%), Positives = 254/536 (47%), Gaps = 108/536 (20%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F V +G ST+
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
+ +PN+ +++ +V P ++ Y I L + V E ++
Sbjct: 535 AGKRLAYVEPNATAAQCTLDLLNDTPVEVVYSPTFSALPLAHYDIMMLSVPVTFREPLTM 594
Query: 771 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
Q + L++ AS + + L L C Q A +
Sbjct: 595 QHERLAKAASMTDFL-----------------------LLALPCHAQIN----AEKLKQG 627
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
A + ++KPL S+ L +L + + + +++ ++
Sbjct: 628 GA---------AACLLKPLTSTRLLPALTEYCQLNHHAEPLLMDASKIAM-------TVM 671
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VDDN NLK+ A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 672 AVDDNPANLKLIGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDG 726
>gi|294637606|ref|ZP_06715886.1| sensor protein GacS [Edwardsiella tarda ATCC 23685]
gi|451965956|ref|ZP_21919211.1| two-component histidine kinase BarA [Edwardsiella tarda NBRC
105688]
gi|291089236|gb|EFE21797.1| sensor protein GacS [Edwardsiella tarda ATCC 23685]
gi|451315205|dbj|GAC64573.1| two-component histidine kinase BarA [Edwardsiella tarda NBRC
105688]
Length = 934
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 161/523 (30%), Positives = 251/523 (47%), Gaps = 81/523 (15%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T L TQ DY+ T + S L+
Sbjct: 277 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQVLKTPLSATQIDYLHTIERSANNLL 336
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN+VLD +K+E+GKL LE + F LR +D+V +L + + DKG+EL + + + VPE +
Sbjct: 337 SIINDVLDFSKLEAGKLVLEHIPFMLRETIDEVATLLAPSAHDKGLELTLNVRNDVPEHV 396
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R +Q++TNL+GN+IKFTEKG+I + + ++E+E ++ +
Sbjct: 397 LGDPMRLQQVLTNLLGNAIKFTEKGNIDIRIEQRSLNTQAVELEVQVHDT---------- 446
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
G GI QS++F F Q S
Sbjct: 447 --------------------------------------GIGISERQQSQLFQAFRQADAS 468
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
I+R HGGTG+GL I++ L+ M G+I F S P+ GSTF F H ++N
Sbjct: 469 ITRRHGGTGLGLVITQKLINEMGGDIAFHSQPHKGSTFWF-------------HIRLELN 515
Query: 727 NQ--PNSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 783
+ P S+ E G L ++ P+ A+ + ++ ++V +Q+ S
Sbjct: 516 HNAPPASLPLERLDGQTLLYIESNPVAAQCTLDMLKVTPLEVTYCPQ----FAQVIPDSH 571
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
+++L V TS+++ + ++ L S + ++T I
Sbjct: 572 -YDILLFGLPVQ---TSLTSEHMQEKLSRALRLADRVILALPSHTLHDSDT-LKARGIRR 626
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
+ KPL SS L +L + N R ++ S S L L ++ VDDN NLK+
Sbjct: 627 CLFKPLASSRLLPAL-----LDNALPPRAPQVISPSGDRLPL--TVMAVDDNPANLKLIG 679
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L + G++A D MDIQMPEMDG
Sbjct: 680 ALLGEQVQHTLLCHSGEEALAAAR-DRPLDIILMDIQMPEMDG 721
>gi|330504046|ref|YP_004380915.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
gi|328918332|gb|AEB59163.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
Length = 916
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 160/530 (30%), Positives = 241/530 (45%), Gaps = 85/530 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+K+A A KS+FLA +SHEIRTP+NG+LG ++L +EL QQDY+ T + S +L+
Sbjct: 274 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLSTIEKSADSLL 333
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+INEVLD +K+E+GKL LE++ FNLR +L D L++ + + +K +EL I P L
Sbjct: 334 GIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELVSLIYRDTPLAL 393
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R +Q++TNL+ N+IKFT +G I + + +E DS +
Sbjct: 394 RGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESTDSAQ------------------ 435
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
L +SV DTG G+ E +F F Q S
Sbjct: 436 ------------------------------LRISVMDTGIGLSDEDLRALFQAFSQADNS 465
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+SR GGTG+GL ISK L+ +M GEIG S P GS F T +
Sbjct: 466 LSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWITLTLPKARDDA--------E 517
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS---GSK 783
+ P + QG + V++ + + + ++ G++VE +D Q + G +
Sbjct: 518 DLPRTA---LQGRRVAVLESHELARQALTHQLEDCGLEVESFADPGQLFEAVNDQQHGEQ 574
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS-----SSRANTSTDG 838
+++ ++ + ++ L LGC K +L + + + T
Sbjct: 575 PLSLAVLGITASQMPPEALGQRIHELDSLGC----KALVLCPTTELGLFHETLPDAYTQL 630
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 898
+ P K ++ + S QR I + P +IL VDDN N
Sbjct: 631 QAKPPCTRKLHKALVEMVSPQRP--ASEPITIGDTRRP-----------QILCVDDNPAN 677
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
L + L GA V V+ G A E + FD FMD+QMP MDG E
Sbjct: 678 LLLVQTLLDDLGAQVTAVDSGYAAIEAIQ-QGCFDLVFMDVQMPGMDGRE 726
>gi|432544398|ref|ZP_19781238.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE236]
gi|432549888|ref|ZP_19786653.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE237]
gi|431073333|gb|ELD80984.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE236]
gi|431079056|gb|ELD86035.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE237]
Length = 763
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 128 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 187
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 188 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 247
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 248 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 304
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 305 DQSRLFQAFR---------------------------------------------QADAS 319
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 320 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 379
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 380 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 436
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 437 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 468
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 469 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 519
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 520 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 571
>gi|107102995|ref|ZP_01366913.1| hypothetical protein PaerPA_01004064 [Pseudomonas aeruginosa PACS2]
Length = 918
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 167/551 (30%), Positives = 256/551 (46%), Gaps = 92/551 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + ++A + AKS+FLA +SHEIRTP+NGVLGML +L DT LD
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q YV T +SG AL+S+IN++LD A++ESGKL LE + F+L +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L + + VP L GDP R RQ++ NL+ N++KFT +GH+ V V
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ F++ G L+ SV D+G GI
Sbjct: 550 --------------------------RRFDEGGRE-----------RLLYSVSDSGIGIS 572
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+AQ +F F Q S +R +GG+G+GL+IS+ LV M G I S P G+ F+
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTQFSVDLP 632
Query: 710 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +Q + ++P ++SE L +D + ++R G++VE
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679
Query: 769 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 822
+CL + + + +LV W S+ TL+ Q + L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728
Query: 823 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L + +G+ + + V +K LR ++L +R G E
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDE---- 784
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFM 937
L IL+ +DN VN V L + G AV G+ A E L P+ M
Sbjct: 785 ----RLDAPCILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840
Query: 938 DIQMPEMDGYE 948
D +MPEMDG+E
Sbjct: 841 DGEMPEMDGFE 851
>gi|258622337|ref|ZP_05717362.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
VM573]
gi|258585353|gb|EEW10077.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
VM573]
Length = 927
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 177/599 (29%), Positives = 281/599 (46%), Gaps = 100/599 (16%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L ++ I + ++ H I QAT + +E
Sbjct: 209 NMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 268
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQTDY 328
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + +L++V++L + + +KG+E+
Sbjct: 329 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I ++P ++GDP R +Q++TNL+GNSIKFTE+G+I V+V +
Sbjct: 389 TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEM--------------- 433
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
++ D+I+L V DTG GI Q+
Sbjct: 434 ---------------------------------RALRDDVIDLQFMVRDTGIGISERQQA 460
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV M GEI S + GSTF F
Sbjct: 461 QLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWF-------- 512
Query: 715 STSNEHNSQ-QMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
T H ++ MN+ ++ L+++P A + + + + G++V + +
Sbjct: 513 -TLRLHTTELPMNDGYDANLLNH--RHLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE 569
Query: 771 QLQCLSQIA---SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSI 827
+ Q + + SK N LVE +W + T + G S LA+ +
Sbjct: 570 EEQVYDYVLLNLAPSKETNPTLVE--LWVQRALAMT------HNVIVGVPSTELALADQL 621
Query: 828 SSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887
I KPL L +L + + N LP L L
Sbjct: 622 MQRYP---------VKCIGKPLSRKKLLQTL-----AAQQPPLSNPSLPKPQADKLPLC- 666
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++ VDDN NLK+ A L+ VV G++A E H FD MDIQMP MDG
Sbjct: 667 -VMAVDDNPANLKLITALLQERVECVVACTSGQEAIEQAQIRH-FDIILMDIQMPHMDG 723
>gi|392544981|ref|ZP_10292118.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas rubra ATCC
29570]
Length = 1333
Score = 209 bits (533), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 173/557 (31%), Positives = 273/557 (49%), Gaps = 83/557 (14%)
Query: 398 IASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLG 457
+A +VG + T + + E + + K KA+ AK +FLA +SHEIRTPMN ++G
Sbjct: 574 LAGVVGLLLDVTERKQMEQE-----LRQAKDKADEMSTAKGEFLANMSHEIRTPMNAIIG 628
Query: 458 MLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517
M + + T+L Q Y+ + K+L+ +IN++LD +K+ESGKLE+E + F+L+ +LD
Sbjct: 629 MSHLALRTDLTPQQMGYINKIDQAAKSLLGIINDILDFSKIESGKLEIEHIDFSLQEVLD 688
Query: 518 DVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577
+V+++ + Q+KG+E+ + I+ VP +L+GDP R QI+ NL GN+IKFTE+G I ++V
Sbjct: 689 NVVNINVIRVQEKGLEMLLDIAPDVPISLVGDPLRLGQILINLCGNAIKFTEQGEITISV 748
Query: 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQ-DGSTSPFKSSSADLIN 636
E++ D + ++ S K+T G R K F+ F+Q DG
Sbjct: 749 TAAEQIEDQVTLKF---SVKDTGIGMS---REQQNKLFQAFSQADG-------------- 788
Query: 637 LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS 696
SI+R +GGTG+GLSI K LV M G IG S
Sbjct: 789 -----------------------------SITRKYGGTGLGLSICKKLVELMGGSIGVHS 819
Query: 697 IPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQ--PNSVSSEFQGMKALVVDPRPIRAKVS 754
GS F FT G S+ ++ N P+ S+ G +ALVVD +
Sbjct: 820 EQGKGSEFFFTIKSGLQSA--------KLTNVICPD---SQLAGKQALVVDDNESARAIL 868
Query: 755 RYHIQRLGIQVEVVSDQLQC--LSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 812
++ + QV + L+Q A G II M W+ + ++R L
Sbjct: 869 TNLLKAMKFQVTCSASGSGAVELAQ-AGGYDIIFM------DWKMPHMSGIDAIKHIRAL 921
Query: 813 GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNK--GNI 870
+ K ++L + + S I SVI+KP+ +S+L S+ + + + GN
Sbjct: 922 ELETEPK-YVLVTAYGTDIGMNSEVHELIDSVILKPVNASVLLNSIMESFQLSEQQGGNE 980
Query: 871 RNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH 930
++ + +L L + +L+V+DN+ N ++A L V E G+ A E++
Sbjct: 981 SYKKVDNTAL--LFEQQHVLLVEDNSTNQEIAKEMLSSLNLQVSIAENGQVAVEMI-KAQ 1037
Query: 931 QFDACFMDIQMPEMDGY 947
FD MDIQMP MDGY
Sbjct: 1038 AFDIVLMDIQMPVMDGY 1054
>gi|419182121|ref|ZP_13725732.1| HAMP domain protein [Escherichia coli DEC7C]
gi|378022241|gb|EHV84928.1| HAMP domain protein [Escherichia coli DEC7C]
Length = 734
Score = 209 bits (533), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 99 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 158
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 159 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 218
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 219 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 275
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 276 DQSRLFQAFR---------------------------------------------QADAS 290
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 291 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 350
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 351 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 407
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 408 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 439
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 440 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 490
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 491 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 542
>gi|334136312|ref|ZP_08509781.1| PAS domain S-box protein [Paenibacillus sp. HGF7]
gi|333606163|gb|EGL17508.1| PAS domain S-box protein [Paenibacillus sp. HGF7]
Length = 912
Score = 209 bits (533), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 137/404 (33%), Positives = 208/404 (51%), Gaps = 65/404 (16%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
++ K+ AE AD AKS+FLA +SHEIRTPMNG++GM D+L +TEL QQ Y S
Sbjct: 501 IIRAKESAEKADQAKSEFLAIMSHEIRTPMNGIIGMADLLAETELSEEQQSYADIILQSS 560
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
AL+ ++NE+LD +K+E+GK+ + F++R++LD V+ LF K+ ++G+ L + +
Sbjct: 561 YALLRILNEILDFSKIEAGKMVVNHEPFDVRSVLDHVVELFHPKAAERGIRLTYELDGGI 620
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLS 601
P TLIGD G RQII NL+GN+IKFTEK GH+ ++ L
Sbjct: 621 PSTLIGDEGILRQIIVNLVGNAIKFTEKDGHVSLSAKL---------------------- 658
Query: 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661
P +S + L SV DTG GIP + QS++F F
Sbjct: 659 ---------------------DKMPGRSDAV----LQFSVRDTGIGIPADKQSQLFQSFS 693
Query: 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF----GNGSSTS 717
Q+ P+I+R +GGTG+GL+I K LV + G IG S N+GSTF F F + + S
Sbjct: 694 QLHPTINRKYGGTGLGLAICKKLVELLGGAIGVDSQVNVGSTFHFVLPFELPGESPAPYS 753
Query: 718 NEHNSQQMNNQPNSV-----------SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 766
+Q+ P S EF MK LV D P+ + +++LG + +
Sbjct: 754 VPEKTQRSKPAPASTLVSDRESGALPPPEFGPMKLLVADDNPVNRLLLITLLKKLGYEAD 813
Query: 767 VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLR 810
+ + L + S + +M+ ++ ++ E D +T + L+
Sbjct: 814 YAENGAEALKAVLSDT--YDMVFMDLQMPEMDGFETTAAIRRLK 855
Score = 46.2 bits (108), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
K+L+ DDN VN + LK+ G E G +A + ++ +D FMD+QMPEMDG+
Sbjct: 787 KLLVADDNPVNRLLLITLLKKLGYEADYAENGAEALKAVLS-DTYDMVFMDLQMPEMDGF 845
Query: 948 E 948
E
Sbjct: 846 E 846
>gi|451988206|ref|ZP_21936344.1| COG0642: Signal transduction histidine kinase [Pseudomonas
aeruginosa 18A]
gi|451754113|emb|CCQ88867.1| COG0642: Signal transduction histidine kinase [Pseudomonas
aeruginosa 18A]
Length = 918
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 167/551 (30%), Positives = 256/551 (46%), Gaps = 92/551 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + ++A + AKS+FLA +SHEIRTP+NGVLGML +L DT LD
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q YV T +SG AL+S+IN++LD A++ESGKL LE + F+L +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L + + VP L GDP R RQ++ NL+ N++KFT +GH+ V V
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ F++ G L+ SV D+G GI
Sbjct: 550 --------------------------RRFDEGGHE-----------RLLYSVSDSGIGIS 572
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+AQ +F F Q S +R +GG+G+GL+IS+ LV M G I S P G+ F+
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632
Query: 710 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +Q + ++P ++SE L +D + ++R G++VE
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679
Query: 769 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 822
+CL + + + +LV W S+ TL+ Q + L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728
Query: 823 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L + +G+ + + V +K LR ++L +R G E
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDE---- 784
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFM 937
L IL+ +DN VN V L + G AV G+ A E L P+ M
Sbjct: 785 ----RLDAPCILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840
Query: 938 DIQMPEMDGYE 948
D +MPEMDG+E
Sbjct: 841 DGEMPEMDGFE 851
>gi|398943889|ref|ZP_10670890.1| PAS domain S-box [Pseudomonas sp. GM41(2012)]
gi|398158592|gb|EJM46932.1| PAS domain S-box [Pseudomonas sp. GM41(2012)]
Length = 1516
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 167/572 (29%), Positives = 266/572 (46%), Gaps = 87/572 (15%)
Query: 412 RIAKVEEDYHGMMEL-------KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMD 464
R+ + D EL K++A+ A AKS FLA +SHEIRTPMN VLGML ++ +
Sbjct: 755 RVTGINRDITSQRELESHLLYAKEQADTASAAKSSFLANMSHEIRTPMNAVLGMLQLVQN 814
Query: 465 TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFS 524
T+L+ Q DYV AQ + K+L+ L+N++LD +K+E+GKL+L+ F L ++ D+ + +
Sbjct: 815 TDLNDRQLDYVTKAQTAAKSLLGLLNDILDYSKIEAGKLQLDVHPFELEPLMRDLAVVLA 874
Query: 525 GKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVV 584
G K VE+ + +P LIGD R +Q++ NL GN++KFT +G I V+V
Sbjct: 875 GNQGQKEVEVMFDLDANLPNDLIGDSLRLQQVLINLAGNALKFTMEGQIVVSV------- 927
Query: 585 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644
+L ++N++S L ++V DT
Sbjct: 928 ------EQLMRTENSVS-----------------------------------LRIAVSDT 946
Query: 645 GQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
G GI E IF F Q S +R GGTG+GL I K LV M GE+ S +GS F
Sbjct: 947 GIGISPEQLQCIFEGFTQAEASTTRRFGGTGLGLVICKRLVSLMGGELQVESQQGVGSRF 1006
Query: 705 TFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQ 764
F N++ + P S ++ LV D + ++ + LG +
Sbjct: 1007 WFDITLDVAP------NARLRPDSPGVDVS----IRILVADDNAMAGELLLRTVHALGWK 1056
Query: 765 VEVVSDQLQCLSQIASG---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLF 821
+ VS Q + + + + +++L++ + + D + + R+ G G +
Sbjct: 1057 ADHVSGGTQAVEWVKNAQARGEAYDVVLMDWRMSDMDGLSAAQLI---RQQGNGVPPPMV 1113
Query: 822 LLANSISSSRANTSTDGVSIPSV--IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMS 879
++ + + + P V + KP+ LA ++QRA+ G LP S
Sbjct: 1114 IMITAYGREVLADANEMGDAPFVGFLTKPVTPKQLADAVQRAL----NGKDLAQSLPPRS 1169
Query: 880 L---RHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QFDAC 935
L G ++L+V+DN +N +VA L GA V E G + +M + FDA
Sbjct: 1170 TVDRPQRLAGLRLLVVEDNMLNRQVADELLTGEGAQVTLAEGGLEGVSRVMTENVSFDAV 1229
Query: 936 FMDIQMPEMDGYEML------PCFESFLLIAI 961
MDIQMP++DG E P F + ++A+
Sbjct: 1230 LMDIQMPDIDGLEATRRIRSNPRFATLPIVAM 1261
>gi|416865626|ref|ZP_11915770.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
138244]
gi|334834369|gb|EGM13338.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
138244]
gi|453047509|gb|EME95223.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
PA21_ST175]
Length = 918
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 167/551 (30%), Positives = 256/551 (46%), Gaps = 92/551 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + ++A + AKS+FLA +SHEIRTP+NGVLGML +L DT LD
Sbjct: 381 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 440
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q YV T +SG AL+S+IN++LD A++ESGKL LE + F+L +L D L+LFS ++ +
Sbjct: 441 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 500
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L + + VP L GDP R RQ++ NL+ N++KFT +GH+ V V
Sbjct: 501 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 549
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ F++ G L+ SV D+G GI
Sbjct: 550 --------------------------RRFDEGGHE-----------RLLYSVSDSGIGIS 572
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+AQ +F F Q S +R +GG+G+GL+IS+ LV M G I S P G+ F+
Sbjct: 573 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632
Query: 710 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +Q + ++P ++SE L +D + ++R G++VE
Sbjct: 633 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 679
Query: 769 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 822
+CL + + + +LV W S+ TL+ Q + L
Sbjct: 680 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 728
Query: 823 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L + +G+ + + V +K LR ++L +R G E
Sbjct: 729 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDE---- 784
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFM 937
L IL+ +DN VN V L + G AV G+ A E L P+ M
Sbjct: 785 ----RLDAPCILVAEDNPVNQLVVRGFLAKRGYAVRLAGNGRLALDEYLRDPNGIQLILM 840
Query: 938 DIQMPEMDGYE 948
D +MPEMDG+E
Sbjct: 841 DGEMPEMDGFE 851
>gi|425175628|ref|ZP_18573748.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA504]
gi|429021990|ref|ZP_19088515.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0428]
gi|408090223|gb|EKH23500.1| signal transduction histidine-protein kinase BarA [Escherichia coli
FDA504]
gi|427275486|gb|EKW40101.1| signal transduction histidine-protein kinase BarA [Escherichia coli
96.0428]
Length = 748
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 166/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 113 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 172
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 173 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 232
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 233 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 289
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 290 DQSRLFQAFR---------------------------------------------QADAS 304
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 305 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 364
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 365 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 421
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 422 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 453
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 454 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 504
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 505 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 556
>gi|395234530|ref|ZP_10412754.1| hybrid sensory histidine kinase BarA [Enterobacter sp. Ag1]
gi|394730976|gb|EJF30803.1| hybrid sensory histidine kinase BarA [Enterobacter sp. Ag1]
Length = 918
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 167/529 (31%), Positives = 254/529 (48%), Gaps = 94/529 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLALKTDLTPTQRDHLYTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 TIINDVLDFSKLEAGKLLLESIPFPLRNTLDEVVTLLAHSAHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q++TNL+GN+IKFTE G+I + V E + +++E ++ +T G P
Sbjct: 403 IGDPLRLQQVVTNLVGNAIKFTETGNIDLLVEKRAEGNNKVQIEMQI---HDTGIGIPEQ 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
++ ++ F+ Q S
Sbjct: 460 EQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSKPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSVS-----SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN+V+ + G + V+P A+ + +Q + V V S L L
Sbjct: 522 --PNAVNDRQVLDKLAGKRLGYVEPNATAAQSTLNLLQNTPLDV-VHSPSLTGLP----- 573
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
+ +++L V T TL + N + + +LA + +
Sbjct: 574 DEHYDILLCGIPV----TFTETLTLANPKLAKAVTMADCLILALPCHTQVGAEELKRQGV 629
Query: 842 PSVIMKPLRSS----MLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
++KP+ S+ ML S +A N LP + L ++ VDDN
Sbjct: 630 AGCLLKPITSTRLFPMLLESCPKA----------NLALPFVEHSD-KLPMAVMAVDDNPA 678
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L+ VV E G +A E D MDIQMPEMDG
Sbjct: 679 NLKLIGALLEDRVQQVVLCESGTQALERAR-QMNIDIILMDIQMPEMDG 726
>gi|419330323|ref|ZP_13871923.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC12C]
gi|378168798|gb|EHX29701.1| signal transduction histidine-protein kinase BarA [Escherichia coli
DEC12C]
Length = 720
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 167/535 (31%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 85 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 144
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 145 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 204
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 205 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 261
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 262 DQSRLFQAFR---------------------------------------------QADAS 276
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 277 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 336
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 337 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 393
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q L
Sbjct: 394 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQVNAEKL---------- 426
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 427 -KQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 476
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 477 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 528
>gi|437153270|ref|ZP_20690376.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435141021|gb|ELN27963.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
Length = 918
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 162/536 (30%), Positives = 255/536 (47%), Gaps = 108/536 (20%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F V +G ST+
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHIHLDLNPNVIIDGPSTACL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
+ +PN+ +++ +V P ++ Y I L + V E ++
Sbjct: 535 AGKRLAYIEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTM 594
Query: 771 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
Q + L++ AS + + + L E N KL G +
Sbjct: 595 QHERLAKAASMTDFLLLALPCHEQI------------NAEKLKQGGAA------------ 630
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
+ ++KPL S+ L +L + + + +++ ++
Sbjct: 631 ------------ACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVM 671
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VDDN NLK+ A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 672 AVDDNPANLKLIGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDG 726
>gi|383188616|ref|YP_005198744.1| signal transduction histidine kinase [Rahnella aquatilis CIP 78.65
= ATCC 33071]
gi|371586874|gb|AEX50604.1| signal transduction histidine kinase [Rahnella aquatilis CIP 78.65
= ATCC 33071]
Length = 916
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 189/668 (28%), Positives = 303/668 (45%), Gaps = 105/668 (15%)
Query: 294 NATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVS 353
+A+P+ R+ GY+ D+ S+ +LA Q FV+ + +++ +
Sbjct: 149 SASPDNRL----GYIAIELDLRSV------KLAQYQEAFVSTMLLLLCLGIATLFAYRLM 198
Query: 354 DDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IF 406
D + + N D R+ ++ R + P L + I + ++ H I
Sbjct: 199 RDVTGPIRNMVNTVDRIRRGQLDSRVEGNMPGELSMLKNGINSMAMSLTAYHEEVQQNID 258
Query: 407 QATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM 463
QAT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G +
Sbjct: 259 QATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTL 318
Query: 464 DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 523
T L TQ DY++T + S L+++IN+VLD +K+E+GKL LE + F+LR +LD+V+ L
Sbjct: 319 KTPLSPTQADYLQTIERSANHLLTIINDVLDFSKLEAGKLVLEHIPFSLREMLDEVVILL 378
Query: 524 SGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 583
+ + DKG+EL + + + VPE ++GDP R +Q++TNL+GN+IKFTE G+I + V L +
Sbjct: 379 AHTAHDKGLELTLNVHNNVPENVLGDPMRMQQVVTNLLGNAIKFTETGNIDINVELRSQN 438
Query: 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 643
+E+E ++ +G +++R S
Sbjct: 439 NLQVELEVQIHD-----TGIGISERQQS-------------------------------- 461
Query: 644 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 703
++F F Q SISR HGGTG+GL I++ LV M G+I F S N GST
Sbjct: 462 -----------QLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFYSQLNRGST 510
Query: 704 FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 763
F F N H + P S+ S +G + V+ P AK + +Q +
Sbjct: 511 FWFHVTL---ELNENRHIT------PVSM-SHLEGKRLAYVEANPAAAKATMEILQATPL 560
Query: 764 QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 823
V + A +++L V K V + L+K+ Q L L
Sbjct: 561 DVT------HRTTLAALPDPWYDIMLCSIPV--KPDQVLADYDGKLQKVLGMTQHLLLAL 612
Query: 824 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG-----VGNKGNIRNWELPSM 878
+ GV + ++KP+ S L L +GN + + LP
Sbjct: 613 PSQFQVDAEELKRRGVQ--ACLIKPMSSIRLLPLLLHEQPASVRVIGNDED-KTSRLPLT 669
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD 938
+ + VDDN NLK+ A L+ V G++A ++ D MD
Sbjct: 670 A----------MAVDDNPANLKLIGALLEELVETTVLCHSGEEAIDVARHT-DLDIILMD 718
Query: 939 IQMPEMDG 946
IQMP++DG
Sbjct: 719 IQMPDIDG 726
>gi|288933810|ref|YP_003437869.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
gi|288888539|gb|ADC56857.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
Length = 916
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 165/526 (31%), Positives = 253/526 (48%), Gaps = 89/526 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QI+TNL+GN+IKFTE G+I V V + + + V+ E+ +T G P
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ + G + V+ A+ + + ++V + S L++
Sbjct: 522 --PNAIPDMLNTDGLTGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 840
+++LV V +D S L K C + L L S DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLVK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629
Query: 841 IPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
+ ++KPL ++ L +L N P L ++ VDDN NLK
Sbjct: 630 --ACLLKPLTTTRLLPALMAT-------NHAPASAPLTQTDSHKLPMTVMAVDDNPANLK 680
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+ A L V+ + G++A + Q D MDIQMP+MDG
Sbjct: 681 LIGALLDDLVQQVILCDSGQQAVD-QAKRLQMDLILMDIQMPDMDG 725
>gi|197116465|ref|YP_002136892.1| response receiver histidine kinase response regulator [Geobacter
bemidjiensis Bem]
gi|197085825|gb|ACH37096.1| response receiver histidine kinase response regulator [Geobacter
bemidjiensis Bem]
Length = 578
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 134/409 (32%), Positives = 217/409 (53%), Gaps = 57/409 (13%)
Query: 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496
KSQFLA +SHEIRTPMNGVLGM ++L+ +ELD Q+ YV+ SG++L+ +IN++L+ +
Sbjct: 197 KSQFLANMSHEIRTPMNGVLGMAELLLHSELDEKQKSYVKILHQSGESLLGIINDILNIS 256
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K+E+G+LE+E + F+L + L+ + KGV + + I + VP ++GDP R RQ+
Sbjct: 257 KIEAGRLEIERIPFDLHETARGAVELYREVGRRKGVAVELQIEEDVPRCVVGDPSRLRQV 316
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+ N++ N +KFT+KG + V V LVE+
Sbjct: 317 LINVVNNGLKFTDKGSVQVRVTLVEQY--------------------------------- 343
Query: 617 TFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGI 676
Q+G F+ V+DTG GIP + IF F QV S +R +GGTG+
Sbjct: 344 ---QNGQYVAFE------------VKDTGIGIPADCIGDIFGLFAQVDGSTTRKYGGTGL 388
Query: 677 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS--STSNEHNSQQMNNQPNSVSS 734
GL+I+K LV M G IG S P GSTFTF + +T +E +++N P + +
Sbjct: 389 GLAIAKQLVELMGGAIGVESEPGQGSTFTFIVFLHRHADQTTCDEDTPAELDN-PMAAAR 447
Query: 735 EFQGMKA--LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQ 792
E + A L+ + P+ +V+ I LG QV+V D + + A + ++I ++
Sbjct: 448 EVRKFNARVLLAEDNPVNCEVAFAMIAALGCQVDVAQDGREAVE--AFTRQPYDLIFMDC 505
Query: 793 EVWEKDTSVSTLFVNNLRKLGCGFQSKLF-LLANSISSSRANTSTDGVS 840
++ E D +T + R+LG G + + L A++++ +R + + G+
Sbjct: 506 QMPEMDGYQATRAIRQ-RELGSGRHTTVIALTAHAMAGAREHCLSAGMD 553
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
++L+ +DN VN +VA A + G V + G++A E +D FMD QMPEMDGY
Sbjct: 455 RVLLAEDNPVNCEVAFAMIAALGCQVDVAQDGREAVEAFTR-QPYDLIFMDCQMPEMDGY 513
Query: 948 E 948
+
Sbjct: 514 Q 514
>gi|355640249|ref|ZP_09051668.1| hypothetical protein HMPREF1030_00754 [Pseudomonas sp. 2_1_26]
gi|354831461|gb|EHF15476.1| hypothetical protein HMPREF1030_00754 [Pseudomonas sp. 2_1_26]
Length = 786
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 166/551 (30%), Positives = 256/551 (46%), Gaps = 92/551 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + ++A + AKS+FLA +SHEIRTP+NGVLGML +L DT LD
Sbjct: 249 ADRINALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDR 308
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
Q YV T +SG AL+S+IN++LD A++ESGKL LE + F+L +L D L+LFS ++ +
Sbjct: 309 GQAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVE 368
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L + + VP L GDP R RQ++ NL+ N++KFT +GH+ V V
Sbjct: 369 KRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQ----------- 417
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ F++ G L+ S+ D+G GI
Sbjct: 418 --------------------------RRFDEGGRE-----------RLLYSISDSGIGIS 440
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
+AQ +F F Q S +R +GG+G+GL+IS+ LV M G I S P G+ F+
Sbjct: 441 AQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 500
Query: 710 FGNG-SSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVV 768
+ + +Q + ++P ++SE L +D + ++R G++VE
Sbjct: 501 LSPALDAGEADELAQLLQHRPALLASE----DNLTLD-------CLQALLERWGLRVE-- 547
Query: 769 SDQLQCLSQIASGSKIINM----ILVEQEVWEKDTSV--STLFVNNLRKLGCGFQSKLFL 822
+CL + + + +LV W S+ TL+ Q + L
Sbjct: 548 ----RCLQPRRLNAYLEDFSAPPLLVLAAPWPGPPSIWLDTLYAQL-------EQGQRIL 596
Query: 823 LANSISSSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSM 878
L + +G+ + + V +K LR ++L +R G E
Sbjct: 597 LLCPPQHCQDLPPHEGLRLLALAQPVAVKALREALLELYRERRRQPGRSSEAAPDE---- 652
Query: 879 SLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPHQFDACFM 937
L IL+ +DN VN V L + G AV G+ A E L P+ M
Sbjct: 653 ----RLDAPCILVAEDNPVNQLVVRGFLAKRGYAVRLTGNGRLALDEYLRDPNGIQLILM 708
Query: 938 DIQMPEMDGYE 948
D +MPEMDG+E
Sbjct: 709 DGEMPEMDGFE 719
>gi|344341261|ref|ZP_08772182.1| response regulator receiver modulated diguanylate cyclase
[Thiocapsa marina 5811]
gi|343798841|gb|EGV16794.1| response regulator receiver modulated diguanylate cyclase
[Thiocapsa marina 5811]
Length = 1247
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 130/364 (35%), Positives = 201/364 (55%), Gaps = 48/364 (13%)
Query: 426 LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKAL 485
L +AE A+ AKS FL+ +SHEIRTPMNGV+GML++++DT L Q+DY +A+ S ++L
Sbjct: 373 LAARAEDANRAKSAFLSNMSHEIRTPMNGVIGMLELMLDTALSEEQRDYAESARISARSL 432
Query: 486 VSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPET 545
+ LIN++LD +K+E+GKL+L+ V F+LR L ++ ++ + +++ K + L +S+ VP
Sbjct: 433 LGLINDILDFSKIEAGKLDLDLVEFDLRNQLQELEAIVARRARAKELRLVCEVSEEVPAR 492
Query: 546 LIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 605
L GD GR RQI+ NL+ N+IKFT G + V V +
Sbjct: 493 LRGDAGRLRQILVNLVDNAIKFTPSGEVEVRVEV-------------------------- 526
Query: 606 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665
C G + G+ P + D + L SV DTG GIP + +F F QV
Sbjct: 527 ---CPQAAGAGS----GNAVP----APDAVLLGFSVRDTGIGIPADKLGLLFASFSQVES 575
Query: 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFT----AVFGN-GSSTSNEH 720
I+R +GGTG+GL+ISK LV M GEIG S+ GSTF F+ A+ G+ GS+
Sbjct: 576 GITRRYGGTGLGLAISKQLVELMGGEIGVESVRGQGSTFRFSLRLQAIPGDTGSAHPLAV 635
Query: 721 NSQQMNNQPNSVSS------EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 774
+ QM + +V S F G LV + + +V+R ++R G +V + ++ +
Sbjct: 636 GTPQMRPRGTTVGSVRTSPPRFDGASILVAEDHALNQEVARRLLERTGARVTLANNGAEA 695
Query: 775 LSQI 778
++ +
Sbjct: 696 VAMV 699
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
G IL+ +D+ +N +VA L+R GA V G +A ++ H FD MD+QMP MD
Sbjct: 659 GASILVAEDHALNQEVARRLLERTGARVTLANNGAEAVAMV-DAHAFDLVLMDLQMPVMD 717
Query: 946 GYE 948
G+E
Sbjct: 718 GFE 720
>gi|118594848|ref|ZP_01552195.1| hypothetical protein MB2181_04230 [Methylophilales bacterium
HTCC2181]
gi|118440626|gb|EAV47253.1| hypothetical protein MB2181_04230 [Methylophilales bacterium
HTCC2181]
Length = 875
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 155/537 (28%), Positives = 261/537 (48%), Gaps = 71/537 (13%)
Query: 419 DYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTA 478
D + K+ AE A KS+FLA +SHEIRTPMNG++GM + + T+LD Q+DYV+
Sbjct: 127 DITAAHQAKQLAEDAAKMKSEFLANMSHEIRTPMNGIIGMSHLALKTDLDPRQRDYVKKI 186
Query: 479 QASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYI 538
Q +GK L+ +IN++LD +K+E+GKL +E ++F++ ++ ++ ++ K +K +EL +
Sbjct: 187 QQAGKHLLGIINDILDFSKIEAGKLSIEEITFDIDEMMSNIANMIGQKCSEKNLELIFHF 246
Query: 539 SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKN 598
+P LIGDP R QI+ N N+IKFTEKG + ++ ++E + I
Sbjct: 247 PQDLPHKLIGDPLRLSQILINYGNNAIKFTEKGEVIISAEILERDDEGI----------- 295
Query: 599 TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 658
F FN V DTG G+ E +S++F
Sbjct: 296 ----------------FIKFN---------------------VSDTGIGLTKEQKSKLFQ 318
Query: 659 PFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSN 718
F Q S SR GGTG+GL+I+K L G M GE+G S GSTF FTA F + S
Sbjct: 319 SFQQADTSTSRKFGGTGLGLAIAKQLAGLMGGEVGVESEYGKGSTFWFTAKFQLDKTISK 378
Query: 719 EHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
++ + G + LV+D + + + + ++V + + L Q
Sbjct: 379 RVLFKE----------DLTGKRVLVIDDNEAARFIMKDMLTAMSLEVTLAKSGKEALRQA 428
Query: 779 ASGSKI---INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA--N 833
+ + +I V+ + + F L++L G + +L + +S +
Sbjct: 429 VEANNMGQPFELIFVDYLMPPGMNGID--FTKALKEL-IGSSAPPCILVTAYASDELIHD 485
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGV-GNKGNIRNWELPSMSLR-HLLLGRKILI 891
+S +G I VI KP+ +S+L ++ + + +I ++E + + L G +IL+
Sbjct: 486 SSIEG--IEHVIPKPVNASLLFETILSIFNLFTTESSINSYEAGNKNKDIAALKGVRILL 543
Query: 892 VDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+DN +N ++A L G + G++A +++ + + MD+QMP MDG E
Sbjct: 544 AEDNLLNQQIATEILGDEGLVIDVANNGQEAVDMV-NKNAYAMVLMDMQMPIMDGLE 599
>gi|397166912|ref|ZP_10490355.1| signal transduction histidine-protein kinase BarA [Enterobacter
radicincitans DSM 16656]
gi|396091058|gb|EJI88625.1| signal transduction histidine-protein kinase BarA [Enterobacter
radicincitans DSM 16656]
Length = 921
Score = 209 bits (532), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 166/530 (31%), Positives = 256/530 (48%), Gaps = 96/530 (18%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + +EL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKSELNPTQRDHLLTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V+ L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVILLAHSAHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I V V + +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLIGNAIKFTEHGNIDVVVEKRAISNNKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVNEMGGDISFHSQPNRGSTFWF-------------HIDLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ + G + V+P A+ + + +++ + S L Q G
Sbjct: 522 --PNAITEAPTTERLAGKRLAYVEPNAAAAQSTLEVLNNTPLEI-IYSPSFSALPQ---G 575
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS--SRANTSTDGV 839
I ++ V V E L + + R + LLA + + DG
Sbjct: 576 HYDILLLAVPVTVREP------LSMQHDRLARAAAMTDYLLLALPCHAQVNAEELKQDGA 629
Query: 840 SIPSVIMKPLRSSMLAASLQ---RAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNN 896
+ + ++KPL ++ L +L R + + +LP MS ++ VDDN
Sbjct: 630 A--ACLLKPLTTTRLLPALTEYCRTTQLVLASHADESKLP-MS---------VMAVDDNP 677
Query: 897 VNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ L+ V E G +A E QFD MDIQMP+MDG
Sbjct: 678 ANLKLIGVLLEDQVQHVELCENGLQAIE-RAKQMQFDLILMDIQMPDMDG 726
>gi|182412655|ref|YP_001817721.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
gi|177839869|gb|ACB74121.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
Length = 682
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 167/551 (30%), Positives = 257/551 (46%), Gaps = 86/551 (15%)
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
+L +A A+ AKS FLA +SHEIRTP+NGV+GM +L TELD Q++ +RT + SG+A
Sbjct: 154 QLAMEAAVANQAKSAFLAMMSHEIRTPLNGVIGMTGVLEATELDDEQRECLRTIKMSGEA 213
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L++++N+ LD +K+E+G+LELE V F+LR ++ L +GK+ K +EL +++ P
Sbjct: 214 LLAVVNDTLDYSKIEAGRLELEQVDFDLRGCAEEAAELLAGKAFAKKLELVCDVAEDAPR 273
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 604
+IGDP R RQI NL+GN++KFT G I + + ++E D +L ++T G
Sbjct: 274 RIIGDPVRLRQIFVNLLGNAVKFTPAGEIVLQIRVLE--FDGEAYALQL-GVRDTGIGI- 329
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
AD+ H F++F+ QV
Sbjct: 330 AADKQHRL--FQSFS------------------------------------------QVD 345
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
S +R +GGTG+GL+ISK L M G + S GS F FT +
Sbjct: 346 SSTTRQYGGTGLGLAISKRLAELMGGTMWVESEVGRGSAFLFTIRARRADPITR------ 399
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 784
+G + LVVD V H++ G + V+ +++A+G +
Sbjct: 400 -----PPPPQPLKGRRVLVVDDNATSRDVLARHLRYFGAEPICVASTTDGDARLANGERF 454
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
+ LV+Q++ E V R C LL +++ + DG +
Sbjct: 455 A-LALVDQQMPEGAGDAWARAVAT-RGKPCP-----ILLLHAVGERTNEPAIDG-----I 502
Query: 845 IMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-------MSLRHLLLGRKILIVDDNNV 897
+ KP+R L + +G I+ +P+ M++R L +IL+ +DN V
Sbjct: 503 VHKPIRRESLGERASQVLG----ARIKPLAVPAPVDDTRGMAVRMPL---RILMAEDNVV 555
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL 957
N VA L R G AV V G +A LL FD MD+QMPE+DG+E +
Sbjct: 556 NQTVARHQLARLGYAVEMVPNGLEAV-LLATERDFDVILMDVQMPELDGFEATRRIRAVR 614
Query: 958 LIAILVWKLNL 968
+ L W + L
Sbjct: 615 PLDSLPWIIAL 625
>gi|83310209|ref|YP_420473.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
gi|82945050|dbj|BAE49914.1| Signal transduction histidine kinase [Magnetospirillum magneticum
AMB-1]
Length = 976
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 139/452 (30%), Positives = 229/452 (50%), Gaps = 62/452 (13%)
Query: 439 QFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKV 498
+FLA +SHEIRTPMN +LGM+ +L+D+ LD TQ+DY T +SG+ L+S++N++LD +++
Sbjct: 465 EFLAVMSHEIRTPMNAILGMIRLLLDSPLDETQRDYAETVLSSGEVLLSILNDILDLSRI 524
Query: 499 ESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIIT 558
E+GKLELE ++F+L ++D ++ L + ++++K + L + + VP L GDP R RQ++
Sbjct: 525 EAGKLELERIAFDLPKVVDSIIHLMTPRAREKSLALRSWTAGGVPARLTGDPTRLRQVLL 584
Query: 559 NLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTF 618
NL+ N+IKFTE G V+++L E+
Sbjct: 585 NLLSNAIKFTEAGE--VSLHLSAEI----------------------------------- 607
Query: 619 NQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGL 678
DG + + + V+DTG GI EA+SR+F F Q SI+R GGTG+GL
Sbjct: 608 QPDG-----------IAAIRMEVKDTGIGISPEARSRLFANFAQADASITRRFGGTGLGL 656
Query: 679 SISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQG 738
+I + LV M GEIG S+P GSTF F + ++ P S + +
Sbjct: 657 AICQNLVRLMNGEIGVDSVPGQGSTFWFVVRLPVAVAL------EEGAAAPPSPAKTLRP 710
Query: 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKD 798
+K L+ + P+ KV+ ++R G +V V++ Q L + G +++L++ ++ E D
Sbjct: 711 LKVLLAEDNPVNQKVAILILERSGHKVTGVNNGAQALRAVQEGD--YDIVLMDMQMPEMD 768
Query: 799 TSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 858
ST +R L L + + + + + KP + +LA+ +
Sbjct: 769 GLEST---RRIRALEAPVAQIPILALTANALAAEFERCMEAGMDGFVTKPFQIELLASEI 825
Query: 859 QRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
R + G+ R P M R L+ R +L
Sbjct: 826 ARVLAEKTPGSARR---PPMVPRTPLIDRAVL 854
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
P+ +LR L K+L+ +DN VN KVA L+R G V V G +A + +D
Sbjct: 704 PAKTLRPL----KVLLAEDNPVNQKVAILILERSGHKVTGVNNGAQALRAVQ-EGDYDIV 758
Query: 936 FMDIQMPEMDGYE 948
MD+QMPEMDG E
Sbjct: 759 LMDMQMPEMDGLE 771
>gi|238750558|ref|ZP_04612058.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei
ATCC 43380]
gi|238711206|gb|EEQ03424.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei
ATCC 43380]
Length = 891
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 166/527 (31%), Positives = 246/527 (46%), Gaps = 89/527 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T L Q DY++T Q S L+
Sbjct: 253 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTSLTPPQTDYLQTIQRSANNLL 312
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+IN+VLD +K+E+ KL LE + F LR LD+V+ L + + +KG+EL ++++ VPE +
Sbjct: 313 CIINDVLDFSKLEAEKLILEHIPFPLRGALDEVVILLAHTAHEKGLELTLHVNQDVPEQV 372
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGD R +QIITNL+GN+IKFTE+G+I + V +
Sbjct: 373 IGDAMRLQQIITNLLGNAIKFTEQGNIDILVAV--------------------------- 405
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
++ +A+ + L+V + DTG GI Q+++F F Q S
Sbjct: 406 ---------------------QAKTAEQVTLVVEIHDTGIGISESQQTQLFQAFRQADAS 444
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S N GSTF F E N ++
Sbjct: 445 ISRRHGGTGLGLVITERLVKEMGGDISFYSQVNRGSTFKFHLTL--------ELNEAILS 496
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIIN 786
+P+ S +G K+L +I+R D L C + S +
Sbjct: 497 RRPD--MSHLEG-KSLA-------------YIERNATAARATLDILSCTPLQVTHSLTLA 540
Query: 787 MILVEQEVWEKDTSVSTLFVNNLR----KLGCGFQ-SKLFLLANSISSSRANTSTDGVSI 841
L +Q V + NN+ KL + S+ +LA S +
Sbjct: 541 Q-LPKQHYDFLLVGVPIPYRNNMAVHQDKLLTAMKISERVILALPSQSQIEAEQLKQIGA 599
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLL--LGRKILIVDDNNVNL 899
+ ++KP+ S+ L L N LP+ L L K++ VDDN NL
Sbjct: 600 KACMIKPISSNRLIPLLSYEEA--------NCVLPAAEPPRKLPKLPFKVMAVDDNPANL 651
Query: 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K+ L+ V + G KA + + MDIQMPE+DG
Sbjct: 652 KLIGTLLEELVEETVLCDSGAKAIAYAR-ENTLEIILMDIQMPEIDG 697
>gi|121603351|ref|YP_980680.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
CJ2]
gi|120592320|gb|ABM35759.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
CJ2]
Length = 1130
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 155/513 (30%), Positives = 242/513 (47%), Gaps = 78/513 (15%)
Query: 444 VSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKL 503
+SHEIRTP+NGV+GM +L DT LD+ Q+DYV T + S L+ +IN++LD +K+ESGKL
Sbjct: 480 MSHEIRTPLNGVVGMTTLLADTPLDLEQRDYVHTMRISSDQLLGVINDILDFSKIESGKL 539
Query: 504 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGN 563
ELE NL A +++ + + ++++KG+EL V + D +P + GD R RQI+ NL+ N
Sbjct: 540 ELENEPLNLLATIEEACDIGAPRAREKGLELLVDLGDELPGWVRGDVTRLRQILLNLVNN 599
Query: 564 SIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 623
++KFTEKG + V+ +++E+
Sbjct: 600 AVKFTEKGQVVVSAHVLED----------------------------------------- 618
Query: 624 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKY 683
F L+ ++D+G GI + Q+ +F F+QV S +R +GGTG+GL+I +
Sbjct: 619 ---FSPGRGGLVEF--RIKDSGIGIEPDRQAALFQSFVQVDASTTRKYGGTGLGLAICQR 673
Query: 684 LVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALV 743
LV M G+IG S P GSTF FTA G+ + M + + VS G + V
Sbjct: 674 LVRLMGGQIGLESAPGDGSTFWFTARLGHADAPEVA-----MLSALHLVS--LAGKRVAV 726
Query: 744 VDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVST 803
+D + ++ ++R G+Q + + L+ +A +++++ + + E D
Sbjct: 727 LDDTQLNLRILDKQLRRWGMQPVLFERAAEALAWLAGNP--VDVVISDMHMPEMD---GL 781
Query: 804 LFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863
F LR+ L S +A + ++KP R S L SL R
Sbjct: 782 SFARLLRERTPATPIVLLTSGTMPSGEQARV------FDARLLKPYRQSQLFESLARVTS 835
Query: 864 VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA- 922
+ P+ + IL+ DDN +NLKVA A L + G G +A
Sbjct: 836 APVEVQKVARSEPAAARNQF-----ILVADDNAINLKVALAMLAKLGYEAATAVNGSEAV 890
Query: 923 --------TELLMPPHQFDACFMDIQMPEMDGY 947
T L P Q+ A MD MP MDG+
Sbjct: 891 DRVAASLRTGLGETPRQYAAILMDANMPVMDGF 923
>gi|373952037|ref|ZP_09611997.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
DSM 18603]
gi|373888637|gb|EHQ24534.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
DSM 18603]
Length = 822
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 163/530 (30%), Positives = 258/530 (48%), Gaps = 74/530 (13%)
Query: 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKA 484
E +K A+ + AKS FLA +SHEIRTPMNGV+GM +L+ T L QQDYV T + SG+
Sbjct: 295 EKRKIADEQNQAKSAFLANMSHEIRTPMNGVIGMTSLLISTSLTDEQQDYVETIRISGET 354
Query: 485 LVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPE 544
L+SLIN++LD +K+ESGK+ELE F+L +++++ L + K+ +KG++L I VP
Sbjct: 355 LLSLINDILDFSKIESGKMELETQPFSLTSVIEETYDLLTVKADEKGLDLLYLIDADVPS 414
Query: 545 TLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYP 604
+IGD R RQI+ NL+ N IKFTEKG I +++ L+E+ + + T S K++ G P
Sbjct: 415 EIIGDVTRLRQILVNLVSNGIKFTEKGEILISIELLEK---AGSIYTLQFSVKDSGIGIP 471
Query: 605 VADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664
D+ H + F++F+ QV
Sbjct: 472 -QDKFH--RLFQSFS------------------------------------------QVD 486
Query: 665 PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ 724
S +R HGGTG+GL+IS+ LV M+G I S GS F FT + +Q
Sbjct: 487 SSTTRKHGGTGLGLAISQRLVEAMQGSIRAESKYGEGSCFIFTIKVEASAQL------KQ 540
Query: 725 MNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKI 784
+ + +G KAL++D K+ + + + + + Q A ++
Sbjct: 541 FQKRAPGEDAVLKGKKALILDDNLTNLKILKKQFEYWEMDASIFNHHEQAFQ--AMRNEH 598
Query: 785 INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844
++ +++ + EKD + V L K Q+ +L +S + + D ++
Sbjct: 599 FDLAIIDMFMPEKD----GIDVARLIKSTFPGQNIPLILFSSAGYITMHNTLDHQLFAAI 654
Query: 845 IMKPLRSSMLAASLQRAMGVGNK----GNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900
+ KP++ + ++ + NK N N + + S ILI +DN++N K
Sbjct: 655 LNKPVKYEHIKKTILSVLDKNNKLSPLVNKLNTGVYTKS-----SAINILIAEDNDINQK 709
Query: 901 VAAAGLKRYGAAVVCVERGKKATELLMPPHQ--FDACFMDIQMPEMDGYE 948
+ L++ G V G E+L Q +D MD+QMPEMDGYE
Sbjct: 710 LVRRALEKLGLLSDLVFNG---LEVLHAVEQKNYDLILMDVQMPEMDGYE 756
Score = 42.7 bits (99), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 16/182 (8%)
Query: 788 ILVEQEVWEKDTSVSTLFVNNLRKLGCGF-QSKLFLLANSISSSRANTSTD------GVS 840
IL+ E+ EK S+ TL + ++ G G Q K L S S ++T+ G++
Sbjct: 443 ILISIELLEKAGSIYTLQFS-VKDSGIGIPQDKFHRLFQSFSQVDSSTTRKHGGTGLGLA 501
Query: 841 IPSVIMKPLRSSMLAAS-------LQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
I +++ ++ S+ A S + V ++ ++ + +L G+K LI+D
Sbjct: 502 ISQRLVEAMQGSIRAESKYGEGSCFIFTIKVEASAQLKQFQKRAPGEDAVLKGKKALILD 561
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCF 953
DN NLK+ + + ++A + + H FD +D+ MPE DG ++
Sbjct: 562 DNLTNLKILKKQFEYWEMDASIFNHHEQAFQAMRNEH-FDLAIIDMFMPEKDGIDVARLI 620
Query: 954 ES 955
+S
Sbjct: 621 KS 622
>gi|290511110|ref|ZP_06550479.1| two-component system, NarL family, sensor histidine kinase BarA
[Klebsiella sp. 1_1_55]
gi|289776103|gb|EFD84102.1| two-component system, NarL family, sensor histidine kinase BarA
[Klebsiella sp. 1_1_55]
Length = 916
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 165/529 (31%), Positives = 255/529 (48%), Gaps = 95/529 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QI+TNL+GN+IKFTE G+I V V + + + V+ E+ +T G P
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ + G + V+ A+ + + ++V + S L++
Sbjct: 522 --PNAIPDMLNTDGLTGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 840
+++LV V +D S L K C + L L S DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLVK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629
Query: 841 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
+ ++KPL ++ L +L A + +LP ++ VDDN
Sbjct: 630 --ACLLKPLTTTRLLPALVATNHAPASAPLTQTDSHKLP----------MTVMAVDDNPA 677
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L V+ + G++A + Q D MDIQMP+MDG
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-QAKRLQMDLILMDIQMPDMDG 725
>gi|437371372|ref|ZP_20749333.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|435206426|gb|ELN89951.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
Length = 916
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 162/536 (30%), Positives = 255/536 (47%), Gaps = 108/536 (20%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F V +G ST+
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHIHLDLNPNVIIDGPSTACL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
+ +PN+ +++ +V P ++ Y I L + V E ++
Sbjct: 535 AGKRLAYIEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTM 594
Query: 771 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
Q + L++ AS + + L L C Q + A +
Sbjct: 595 QHERLAKAASMTDFL-----------------------LLALPCHAQ----INAEKLKQG 627
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
A + ++KPL S+ L +L + + + +++ ++
Sbjct: 628 GA---------AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVM 671
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VDDN NLK+ A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 672 AVDDNPANLKLIGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDG 726
>gi|410664898|ref|YP_006917269.1| sensor histidine kinase for anaerobic respiratory control, ArcS
[Simiduia agarivorans SA1 = DSM 21679]
gi|409027255|gb|AFU99539.1| sensor histidine kinase for anaerobic respiratory control, ArcS
[Simiduia agarivorans SA1 = DSM 21679]
Length = 1158
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 150/549 (27%), Positives = 251/549 (45%), Gaps = 76/549 (13%)
Query: 408 ATVNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL 467
A V+ +V + + + +AE+A+VAK++FLA +SHEIRTPMN ++GM + DT+L
Sbjct: 610 AVVSDFTQVVSQEKALKQARAQAESANVAKTEFLARMSHEIRTPMNAIIGMCHLAQDTQL 669
Query: 468 DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKS 527
D Q+ Y+ + +L+ +INE+LD +K+E+GKL+LE + F ++ D + L S K+
Sbjct: 670 DDQQKAYLEHIDTAANSLLHIINEILDFSKIEAGKLDLEQLPFQFESLFDQLDKLLSLKA 729
Query: 528 QDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 587
+K +EL +P L+GD R Q++TNL+ N+IKFT +G + V L+ + +
Sbjct: 730 AEKNLELLFQPDPDIPPMLVGDSLRLGQVLTNLVSNAIKFTAEGQVLVRARLIGSEDEQV 789
Query: 588 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQ-DGSTSPFKSSSADLINLIVSVEDTGQ 646
+VE + K+T G A R + F F Q DGST
Sbjct: 790 DVEFAV---KDTGIGLTEAQRA---QLFNPFTQADGST---------------------- 821
Query: 647 GIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 706
+R GGTG+GLSI K LV M G+I S P GS F F
Sbjct: 822 ---------------------TRQFGGTGLGLSICKRLVNLMHGDIRVESRPGKGSDFIF 860
Query: 707 TAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVE 766
+ T H+ Q ++ L+VD P +V + L ++
Sbjct: 861 NVKLTRAAKTDLLHSRQ---------IPALSSLRTLIVDDNPTAREVISATARSLQLEAS 911
Query: 767 VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS 826
Q L+ + ++IL++ + + D ++ + + + ++ ++
Sbjct: 912 TADSARQALTATGASGANYDLILMDYAMPDMDGITASKAI----RASQADSPPMIIMVSA 967
Query: 827 ISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV-----GNKGNIRNWELPSMSLR 881
T + + + KP+ S L ++ R +G K + R P++
Sbjct: 968 CDRDTIMTEENRAIVDGFVAKPVTQSRLYDAITRVLGTQPEPSAAKSDDRPDHWPALD-- 1025
Query: 882 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP--PHQFDACFMDI 939
G ++L+V+DN VN KVA LK+ G++A + L+ P + A MD+
Sbjct: 1026 ----GARVLLVEDNPVNQKVAQGLLKKQLVVCELANNGQEAIDALLAKGPDFYQAVLMDV 1081
Query: 940 QMPEMDGYE 948
+MP +DGY+
Sbjct: 1082 EMPLVDGYQ 1090
>gi|325293689|ref|YP_004279553.1| two component sensor kinase/response regulator hybrid [Agrobacterium
sp. H13-3]
gi|325061542|gb|ADY65233.1| two component sensor kinase/response regulator hybrid [Agrobacterium
sp. H13-3]
Length = 1223
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 163/557 (29%), Positives = 267/557 (47%), Gaps = 94/557 (16%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ L +AEAAD AKS+FLA +SHEIRTPMNGVLGM ++L + LD Q+ + SG
Sbjct: 657 LQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDTRQKTFTDIIVKSG 716
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
AL+++IN++LD +K+E+G+++L +V F+ ++DV+SL S + +K +EL V I V
Sbjct: 717 NALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKNIELVVRIDPSV 776
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
++GD GRFRQ++TNL+GN++KFTE GH+ + ELS+
Sbjct: 777 FGKVMGDAGRFRQVVTNLVGNAVKFTEMGHVLI----------------ELSA------- 813
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
+S+ A L + VED+G GIP + IF F Q
Sbjct: 814 -------------------------QSAEASETILSLRVEDSGIGIPADKLETIFDKFSQ 848
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
V S +R H GTG+GL+I+ LVG G I VS GSTF F H +
Sbjct: 849 VDGSATRRHEGTGLGLAITVGLVGLFDGTINVVSEVGKGSTFEVNIPF---------HVT 899
Query: 723 QQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSD---QLQCLSQIA 779
++ + P ++ + ++ LV+D + ++ ++ GI V D + L + A
Sbjct: 900 EKRRDAP-LLAMAIEDIRVLVIDDNDVNRRILAEQLKTWGIDGHAVQDGPSGIAVLQEAA 958
Query: 780 SGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGV 839
S I+ I+++ + ++ L V + F + S+ + +
Sbjct: 959 SLGFAIDAIILDYHM----PVMNGLDVVERIRADSRFDDIAIVFLTSMDVVGDESLFTDL 1014
Query: 840 SIPSVIMKPLRSSMLAASL-------------QRAMGVGNKGN---IRNWELPSMSLRHL 883
S+ + +MKP R+ +L ++L Q G+ + G+ ++ P+ R +
Sbjct: 1015 SVQAHLMKPARARLLRSTLFDVVRDVRQKRARQDPQGLASGGSDAPVQPDNGPTDKKRRV 1074
Query: 884 ------LLGRK------ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ 931
+ R+ +L+ +DN+VN V L++ G + V GKKA + H
Sbjct: 1075 VSPPTTVPDRRRPCLVDVLVAEDNDVNQIVFTQILQQAGLRFLIVGNGKKAVQ-AWEEHN 1133
Query: 932 FDACFMDIQMPEMDGYE 948
MD+ MP M+G++
Sbjct: 1134 PAVILMDVSMPVMNGHQ 1150
>gi|322831385|ref|YP_004211412.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602]
gi|384256500|ref|YP_005400434.1| hybrid sensory histidine kinase BarA [Rahnella aquatilis HX2]
gi|321166586|gb|ADW72285.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602]
gi|380752476|gb|AFE56867.1| hybrid sensory histidine kinase BarA [Rahnella aquatilis HX2]
Length = 916
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 187/667 (28%), Positives = 303/667 (45%), Gaps = 103/667 (15%)
Query: 294 NATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVS 353
+A+P+ R+ GY+ D+ S+ +LA Q FV+ + +++ +
Sbjct: 149 SASPDNRL----GYIAIELDLRSV------KLAQYQEAFVSTMLLLLCLGIATLFAYRLM 198
Query: 354 DDGLWLVSTL-NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IF 406
D + + N D R+ ++ R + P L + I + ++ H I
Sbjct: 199 RDVTGPIRNMVNTVDRIRRGQLDSRVEGNMPGELSMLKNGINSMAMSLTAYHEEVQQNID 258
Query: 407 QATVNRIAKVEEDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM 463
QAT + +E+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G +
Sbjct: 259 QATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTL 318
Query: 464 DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 523
T L TQ DY++T + S L+++IN+VLD +K+E+GKL LE + F+LR +LD+V+ L
Sbjct: 319 KTPLSPTQADYLQTIERSANHLLTIINDVLDFSKLEAGKLVLEHIPFSLREMLDEVVILL 378
Query: 524 SGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 583
+ + DKG+EL + + + VPE ++GDP R +Q++TNL+GN+IKFTE G+I + V L +
Sbjct: 379 AHTAHDKGLELTLNVHNNVPENVLGDPMRMQQVVTNLLGNAIKFTETGNIDINVELRSQN 438
Query: 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVED 643
+E+E ++ +G +++R S
Sbjct: 439 NLQVELEVQIHD-----TGIGISERQQS-------------------------------- 461
Query: 644 TGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 703
++F F Q SISR HGGTG+GL I++ LV M G+I F S N GST
Sbjct: 462 -----------QLFQAFRQADASISRRHGGTGLGLVITQRLVKEMGGDISFYSQLNRGST 510
Query: 704 FTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI 763
F F N H + P S+ + +G + V+ P AK + +Q +
Sbjct: 511 FWFHVTL---ELNENRHIT------PVSM-NHLEGKRLAYVEANPAAAKATMEILQATPL 560
Query: 764 QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 823
D + A +++L V K V + L+K+ Q L L
Sbjct: 561 ------DITHRTTLAALPEPWYDIMLCSIPV--KPDQVLADYEGKLQKVLGMTQHLLLAL 612
Query: 824 ANSISSSRANTSTDGVSIPSVIMKPLRS----SMLAASLQRAMGVGNKGNIRNWELPSMS 879
+ GV + ++KP+ S +L Q ++ V + LP +
Sbjct: 613 PSQFQVDAEELKRRGVQ--ACLIKPMSSIRLLPLLLHEQQASVRVIGNDEDKTSRLPLTA 670
Query: 880 LRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939
+ VDDN NLK+ A L+ V G++A ++ D MDI
Sbjct: 671 ----------MAVDDNPANLKLIGALLEELVETTVLCHSGEEAIDVARHT-DLDIILMDI 719
Query: 940 QMPEMDG 946
QMP++DG
Sbjct: 720 QMPDIDG 726
>gi|374300887|ref|YP_005052526.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
gi|332553823|gb|EGJ50867.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
Length = 1087
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 125/358 (34%), Positives = 194/358 (54%), Gaps = 51/358 (14%)
Query: 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQA 480
G + +++AEAA+ AK++FLA +SHE+RTP+NGVLGM+++ + D D++R A+
Sbjct: 699 EGHKQAREEAEAANRAKTEFLANMSHELRTPLNGVLGMIELAGMSCADPKTHDFLRMAKD 758
Query: 481 SGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISD 540
SG+ L+ +IN++LD AK+E+GK+ELE FNLR LD+ ++ KG+ ++ +
Sbjct: 759 SGRMLLDIINDLLDLAKIEAGKVELEKKVFNLREALDNTFYPVCMVAERKGLRCSLVVDQ 818
Query: 541 RVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTL 600
VPE L+GD GRFRQ++TNL+GN++KFTEKG + ++V +
Sbjct: 819 SVPEHLVGDLGRFRQVVTNLVGNAVKFTEKGEVNLSVMRI-------------------- 858
Query: 601 SGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660
PF + D + + V+DTG GIP + + IF F
Sbjct: 859 -----------------------PHPF---ATDSVQIRFRVKDTGIGIPQDMHNAIFDDF 892
Query: 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEH 720
QVG S S +GGTG+GL+IS+ LV M G+I VS GSTFTFTA FG S +
Sbjct: 893 TQVGRSYSSKYGGTGLGLAISRNLVNLMGGDISVVSEEGKGSTFTFTATFGLTSDSPLVD 952
Query: 721 NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
++ ++E + ++ LV++ PI V++ + G E + L ++
Sbjct: 953 AIEKTCG-----TAESKRLRVLVIEDNPINRIVAKELLTLQGCGAETADTGHEGLEKL 1005
>gi|407802970|ref|ZP_11149809.1| sensor histidine kinase/response regulator [Alcanivorax sp. W11-5]
gi|407023130|gb|EKE34878.1| sensor histidine kinase/response regulator [Alcanivorax sp. W11-5]
Length = 923
Score = 209 bits (532), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 170/558 (30%), Positives = 262/558 (46%), Gaps = 99/558 (17%)
Query: 408 ATVNRIAKVEEDYHGMMELKKKAE-------AADVAKSQFLATVSHEIRTPMNGVLGMLD 460
A NRI +++E++ + K +AE A + AKS+FLAT+SHEIRTPMNGVLGM D
Sbjct: 376 ALANRINRLKEEHSTSIHEKARAEMEAFKAGARNQAKSEFLATMSHEIRTPMNGVLGMTD 435
Query: 461 MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 520
+L T L+ Q YV T S ++L+++IN++LD +++E+GKLELE+V ++ +++DD +
Sbjct: 436 LLRRTALNNQQSQYVDTIYQSTQSLLTVINDILDYSRIEAGKLELESVDVSVESLVDDCV 495
Query: 521 SLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580
SLFS S ++ + + Y+ RVPE + DP R +QIITNL+ N+ K TE+G I + V V
Sbjct: 496 SLFSLLSSERQLPIYTYLDSRVPEVIRTDPVRLKQIITNLLSNAFKCTEQGQIALHVA-V 554
Query: 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVS 640
+ D+ L +T SG + + H +K F Q ST
Sbjct: 555 RQPPDNKGQCVLLFEVSDTGSGLDDSQKQHLFKEFSNIEQRSST---------------- 598
Query: 641 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700
R G G+GL+ISK L M GEIG S P
Sbjct: 599 ----------------------------RRKSGAGLGLAISKRLCELMGGEIGVNSAPGR 630
Query: 701 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQR 760
G+TF FT + +Q+++ P ++ + G + L+VDP P + R
Sbjct: 631 GATFWFTI------------HCRQISS-PGTLRA-LHGKRLLIVDPSPPFSLSVSQMASR 676
Query: 761 LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 820
G+QV+ C S + +++ E + T L VN C F+ +L
Sbjct: 677 WGMQVD------DCRSLHDAATRL--------EQATRRTPFDALLVNQ-----C-FKDEL 716
Query: 821 FLLANSISSSRANTSTDGVSIP--------SVIMKPLRSSMLAASLQRAMGVGNKGNIRN 872
+ + + S + IP I P+R+ L L + + +
Sbjct: 717 YQIPIELRPSALLLTGATGEIPAAGVAAGAVAIETPIRARFLREELYNLL---VPTRVSH 773
Query: 873 WELPSMSLRHLLLGR-KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKA-TELLMPPH 930
S ++ L + ++IV+DN VN V + LK G G++A T + P
Sbjct: 774 TPPASQAVDEDSLDKLHVMIVEDNAVNQLVIDSILKTAGIRATVASNGREALTRVEQSPR 833
Query: 931 QFDACFMDIQMPEMDGYE 948
++ FMD +MPEMDGYE
Sbjct: 834 HWNVIFMDCEMPEMDGYE 851
>gi|206578572|ref|YP_002236863.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae 342]
gi|206567630|gb|ACI09406.1| signal transduction histidine-protein kinase BarA [Klebsiella
pneumoniae 342]
Length = 916
Score = 209 bits (532), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 165/529 (31%), Positives = 255/529 (48%), Gaps = 95/529 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + T+L+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTDLNATQRDHLTTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + + DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QI+TNL+GN+IKFTE G+I V V + + + V+ E+ +T G P
Sbjct: 403 IGDPLRLQQIVTNLVGNAIKFTEHGNIDVLVE--QRAISNSRVQIEI-QIHDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H S +N
Sbjct: 475 ISRRHGGTGLGLVITQRLVKEMGGDISFHSQPNRGSTFWF-------------HISLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN++ + G + V+ A+ + + ++V + S L++
Sbjct: 522 --PNAIPDMLNTDGLTGKRLAYVEANATAAQCTLEMLAATPLEV-IYSPTFSSLAEAQ-- 576
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL-LANSISSSRANTSTDGVS 840
+++LV V +D S L K C + L L S DGV+
Sbjct: 577 ---YDILLVGIPVSMRDLSPHR---EKLVK-ACAMSDNVLLALPCHAQVSAEALKRDGVA 629
Query: 841 IPSVIMKPLRSSMLAASL---QRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897
+ ++KPL ++ L +L A + +LP ++ VDDN
Sbjct: 630 --ACLLKPLTTTRLLPALVATNHAPASAPLTQTDSHKLP----------MTVMAVDDNPA 677
Query: 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
NLK+ A L V+ + G++A + Q D MDIQMP+MDG
Sbjct: 678 NLKLIGALLDDLVQQVILCDSGQQAVD-QAKRLQMDLILMDIQMPDMDG 725
>gi|380513218|ref|ZP_09856625.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas sacchari NCPPB 4393]
Length = 1617
Score = 209 bits (532), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 173/556 (31%), Positives = 259/556 (46%), Gaps = 82/556 (14%)
Query: 407 QATVNRIAKVEEDYHGMMEL-------KKKAEAADVAKSQFLATVSHEIRTPMNGVLGML 459
Q V R+ + D ++ K +A+ A AKS FLA +SHEIRTPMN VLGML
Sbjct: 861 QGRVTRVIGINRDISAQLQAEQELRQAKARADEASQAKSSFLANMSHEIRTPMNAVLGML 920
Query: 460 DMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 519
+L T LD Q DYV AQ +GK+L+SL+N++LD +K+E+GKL+L+ F + +L D+
Sbjct: 921 QLLQRTALDARQDDYVGKAQKAGKSLLSLLNDILDYSKIEAGKLQLDLHPFRIEELLRDL 980
Query: 520 LSLFSGKSQDKGVELAVYISDR-VPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVY 578
+ +G Q VE+ VY DR +P+ +IGD R +Q++ NL GN++KFTE GH+ + V
Sbjct: 981 AVVLAGNHQRPEVEI-VYQLDRGIPDRVIGDALRLQQVLINLAGNALKFTEHGHVRLRVE 1039
Query: 579 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLI 638
L++ A + L
Sbjct: 1040 LLQR------------------------------------------------QAQAVTLR 1051
Query: 639 VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 698
+ VEDTG GI E Q RIF F Q SISR GG+G+GL IS+ L+G M GE+ S+
Sbjct: 1052 MIVEDTGIGISAEQQQRIFHSFTQAEASISRRFGGSGLGLVISRRLIGMMGGELQVHSVL 1111
Query: 699 NIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHI 758
GS F F ++ E + +P V LVVD + +V +
Sbjct: 1112 GEGSRFWFDLPLALDANA--EAGTGCGCARPRHV---------LVVDDSALVREVLIDAL 1160
Query: 759 QRLGIQVEVVSDQLQCLSQIASGSKI---INMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815
G +V+ V+ + ++ + + + +L++ W LR + C
Sbjct: 1161 GACGWRVDGVASGEEAVALALAAERKGARYDAVLMD---WRLPGIDGVTAAAQLRAM-CA 1216
Query: 816 FQSKLFLLANSISSSRANTSTDGVSIPSV--IMKPLRSSMLAASLQRAMGVGNKGNIRNW 873
L L+ + S + VS P ++KP+ + +L+RA G +
Sbjct: 1217 V-PPLVLMLTAYQSELLGQTQGHVSPPFADHLVKPVTPCQVIEALERAWNGGAR-IAAPA 1274
Query: 874 ELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQ-F 932
+P R L G ++L+V+DN +N +VA L GA V E G + + Q F
Sbjct: 1275 TVPQRVAR--LPGLRVLVVEDNALNRQVAEELLCAEGAQVALAEDGLSGVQCVRESGQVF 1332
Query: 933 DACFMDIQMPEMDGYE 948
D MD+QMP +DG E
Sbjct: 1333 DVVVMDMQMPRVDGLE 1348
>gi|213416867|ref|ZP_03350011.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 735
Score = 209 bits (532), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 162/536 (30%), Positives = 255/536 (47%), Gaps = 108/536 (20%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 149 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 208
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VPE +
Sbjct: 209 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENV 268
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 269 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 325
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 326 DQSRLFQAFR---------------------------------------------QADAS 340
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F V +G ST+
Sbjct: 341 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACL 400
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
+ +PN+ +++ ++ P ++ Y I L + V E ++
Sbjct: 401 AGKRLAYIEPNATAAQCTLDLLSDTPVEVIYSPTFSALPLAHYDIMILSVPVTFREPLTM 460
Query: 771 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
Q + L++ AS + + L L C Q + A +
Sbjct: 461 QHERLAKAASMTDFL-----------------------LLALPCHAQ----INAEKLKQG 493
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
A + ++KPL S+ L +L + + + +++ ++
Sbjct: 494 GA---------AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVM 537
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VDDN NLK+ A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 538 AVDDNPANLKLIGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDG 592
>gi|200387412|ref|ZP_03214024.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199604510|gb|EDZ03055.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
Length = 918
Score = 209 bits (532), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 158/525 (30%), Positives = 251/525 (47%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN + ++ G + V+P A+ + + ++V V S L
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
I+++ + +E L + + R + LLA +
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + + + +++ ++ VDDN NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDG 726
>gi|16766264|ref|NP_461879.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|161615886|ref|YP_001589851.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167550176|ref|ZP_02343933.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167993450|ref|ZP_02574544.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168231049|ref|ZP_02656107.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168261898|ref|ZP_02683871.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168463891|ref|ZP_02697808.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|168820322|ref|ZP_02832322.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194444640|ref|YP_002042209.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194471010|ref|ZP_03076994.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|204928346|ref|ZP_03219546.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|224584749|ref|YP_002638547.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238909738|ref|ZP_04653575.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|374978978|ref|ZP_09720317.1| BarA sensory histidine kinase [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|375002705|ref|ZP_09727045.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|378446315|ref|YP_005233947.1| sensor protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378451715|ref|YP_005239075.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378700871|ref|YP_005182828.1| sensor protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|378985551|ref|YP_005248707.1| hybrid two-component sensor kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|378990282|ref|YP_005253446.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|379702216|ref|YP_005243944.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383497629|ref|YP_005398318.1| sensor protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|409246649|ref|YP_006887353.1| sensor-regulator, activates OmpR by phophorylation [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|416565819|ref|ZP_11763640.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|418761778|ref|ZP_13317916.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418766281|ref|ZP_13322360.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418771605|ref|ZP_13327612.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418773624|ref|ZP_13329597.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418778568|ref|ZP_13334478.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418783254|ref|ZP_13339101.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418801188|ref|ZP_13356825.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|418806162|ref|ZP_13361734.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418810322|ref|ZP_13365862.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418817940|ref|ZP_13373419.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418823008|ref|ZP_13378417.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|418824627|ref|ZP_13379977.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|418830902|ref|ZP_13385860.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418837363|ref|ZP_13392238.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418842627|ref|ZP_13397437.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418843513|ref|ZP_13398310.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418848093|ref|ZP_13402833.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418857435|ref|ZP_13412062.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418862511|ref|ZP_13417050.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418869827|ref|ZP_13424260.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|419787105|ref|ZP_14312820.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419793500|ref|ZP_14319123.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|421884102|ref|ZP_16315320.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|422032209|ref|ZP_16378324.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427553841|ref|ZP_18928817.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427571395|ref|ZP_18933532.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427592103|ref|ZP_18938331.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427615479|ref|ZP_18943218.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427639533|ref|ZP_18948098.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427662506|ref|ZP_18957809.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427676028|ref|ZP_18962625.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|452123223|ref|YP_007473471.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|6996656|gb|AAF34823.1|AF171069_1 BarA sensor kinase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|16421509|gb|AAL21838.1| sensory histidine kinase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|161365250|gb|ABX69018.1| hypothetical protein SPAB_03679 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403303|gb|ACF63525.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194457374|gb|EDX46213.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|195633256|gb|EDX51670.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|204322668|gb|EDZ07865.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205324815|gb|EDZ12654.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205328470|gb|EDZ15234.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205334634|gb|EDZ21398.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205342849|gb|EDZ29613.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205349206|gb|EDZ35837.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|224469276|gb|ACN47106.1| sensor protein [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|261248094|emb|CBG25929.1| sensor protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267995094|gb|ACY89979.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159519|emb|CBW19038.1| sensor protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312913980|dbj|BAJ37954.1| hybrid two-component sensor kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320087383|emb|CBY97148.1| sensor-regulator, activates OmpR by phophorylation [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|321225638|gb|EFX50692.1| BarA sensory histidine kinase [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|323131315|gb|ADX18745.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|332989829|gb|AEF08812.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|353077393|gb|EHB43153.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Salmonella enterica subsp. enterica serovar
Infantis str. SARB27]
gi|363579816|gb|EHL63588.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|379986337|emb|CCF87593.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|380464450|gb|AFD59853.1| sensor protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|392617479|gb|EIW99904.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392621048|gb|EIX03414.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392734133|gb|EIZ91324.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392738530|gb|EIZ95671.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392738999|gb|EIZ96139.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392752664|gb|EJA09604.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392755777|gb|EJA12686.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392757102|gb|EJA13992.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392780909|gb|EJA37560.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|392781270|gb|EJA37911.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392782779|gb|EJA39409.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392785902|gb|EJA42459.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392786352|gb|EJA42908.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|392799439|gb|EJA55698.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392800098|gb|EJA56336.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392807198|gb|EJA63282.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392816849|gb|EJA72771.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392820948|gb|EJA76782.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|392824152|gb|EJA79943.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392833908|gb|EJA89518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392834909|gb|EJA90509.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392836290|gb|EJA91878.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|414016421|gb|EKT00194.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414016748|gb|EKT00508.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414029669|gb|EKT12826.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414031216|gb|EKT14291.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414034283|gb|EKT17215.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414044595|gb|EKT27037.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414049999|gb|EKT32188.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414057576|gb|EKT39330.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|451912227|gb|AGF84033.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 918
Score = 209 bits (531), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 158/525 (30%), Positives = 251/525 (47%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN + ++ G + V+P A+ + + ++V V S L
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
I+++ + +E L + + R + LLA +
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + + + +++ ++ VDDN NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDG 726
>gi|427800133|ref|ZP_18967937.1| hybrid sensory histidine kinase BarA, partial [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm5]
gi|414063705|gb|EKT44802.1| hybrid sensory histidine kinase BarA, partial [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm5]
Length = 810
Score = 209 bits (531), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 158/525 (30%), Positives = 251/525 (47%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN + ++ G + V+P A+ + + ++V V S L
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
I+++ + +E L + + R + LLA +
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + + + +++ ++ VDDN NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDG 726
>gi|366159778|ref|ZP_09459640.1| hybrid sensory histidine kinase BarA [Escherichia sp. TW09308]
gi|432373355|ref|ZP_19616392.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE11]
gi|430894862|gb|ELC17146.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE11]
Length = 918
Score = 209 bits (531), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 168/538 (31%), Positives = 251/538 (46%), Gaps = 112/538 (20%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
+ +PNS +++ + +V P + Y + LGI V E ++
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMILLGIAVTFREPLTM 594
Query: 771 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
Q + L+Q S + + + L C Q +
Sbjct: 595 QHERLAQAVSMTDFL-----------------------MLALPCHAQ-----------VN 620
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
DG+ + ++KPL + L L +N LP L + ++
Sbjct: 621 AEKLKQDGIG--ACLLKPLTPTRLLPVLTEFC-----HQKQNTLLPVTDESKLAM--TVM 671
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
VDDN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 672 AVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|443469783|ref|ZP_21059926.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
pseudoalcaligenes KF707]
gi|442899267|gb|ELS25755.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
pseudoalcaligenes KF707]
Length = 927
Score = 209 bits (531), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 162/548 (29%), Positives = 259/548 (47%), Gaps = 88/548 (16%)
Query: 410 VNRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV 469
+RI ++E+ + ++A ++AKS+FLAT+SHEIRTP+NGVLGML +L +T LD
Sbjct: 392 ADRINTLKEEGFRSRQAAEQAHIENLAKSRFLATMSHEIRTPLNGVLGMLQLLRETSLDR 451
Query: 470 TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQD 529
+Q+ YV T +SG AL+S+IN++LD A++ESGKLELE + F+L ++ + L LF+ ++ D
Sbjct: 452 SQRFYVDTISSSGTALMSVINDILDFARIESGKLELERIEFDLEDLVSETLGLFTAQALD 511
Query: 530 KGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589
K + L + + VP + GDP R +Q++ NL+GN++KFT +GH+ + V L
Sbjct: 512 KRLGLHLALDAGVPRRIQGDPTRLKQVLMNLLGNAVKFTAEGHVSLQVSL---------- 561
Query: 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIP 649
+ +++ +L+ V D+G GI
Sbjct: 562 --------------------------------------RRNASGAGHLVFCVSDSGIGIR 583
Query: 650 LEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709
EA +++F F Q S +R +GG+G+GL+ISK LV M G I S N G+ F+F+
Sbjct: 584 PEALAQLFESFAQGDSSTTRRYGGSGLGLAISKELVELMDGRIEVQSTLNQGTRFSFSLP 643
Query: 710 FGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS 769
G+ +S++ G AL+ + + R G++ E
Sbjct: 644 LQPGAFDD------------DSLARLLDGRTALLASRDGLGLDALGRLLGRWGMRCERCQ 691
Query: 770 DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLR-KLGCGFQSKLFLLANSIS 828
D + L + + +LV W + T ++ LR +L G + LL
Sbjct: 692 DPERLLEHLEDFAT--PPLLVIMAPWPGE---PTRWLEGLRPRLEHG---QRVLLVCPPE 743
Query: 829 SSRANTSTDGVSIPS----VIMKPLRSSMLAASLQRAM---GVGNKGNIRNWELPSMSLR 881
+ DG+ + + +I+ LR ++ +R + +G R P
Sbjct: 744 QCKDLPVNDGLRLRALAQPIILGHLRETLQELYRERRLEERPPQREGRRRTAATPC---- 799
Query: 882 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM-PPHQFDACFMDIQ 940
IL+ +DN VN V LK+ G V V G+ A E P MD +
Sbjct: 800 -------ILVAEDNPVNQLVVQGFLKKRGYLVRTVANGRAAVEEYQRDPDGIQLILMDCE 852
Query: 941 MPEMDGYE 948
MPEMDG+E
Sbjct: 853 MPEMDGFE 860
>gi|386288898|ref|ZP_10066037.1| signal transduction histidine kinase [gamma proteobacterium BDW918]
gi|385277902|gb|EIF41875.1| signal transduction histidine kinase [gamma proteobacterium BDW918]
Length = 1255
Score = 209 bits (531), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 162/541 (29%), Positives = 258/541 (47%), Gaps = 93/541 (17%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K++AEAA AKS+FLA +SHEIRTPMNGVLGML++L T L+ Q + A++S ++L+
Sbjct: 573 KEQAEAAVRAKSEFLAVMSHEIRTPMNGVLGMLNLLESTPLNQDQGHKIHIAKSSARSLL 632
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
SLI+++LD +KV++GKL+LE + F+LR LD+ + + DKG+EL V +S ++
Sbjct: 633 SLIDDILDFSKVDAGKLQLETIEFDLRQALDEFAESLAHYAHDKGLELVVDLSAVPLGSV 692
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R RQI+TNL+ N+IKFTE G + + L EE
Sbjct: 693 VGDPSRLRQIVTNLLANAIKFTEHGSVILRASLREE------------------------ 728
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
H + L ++ D+G G+ E ++F+PF Q+ S
Sbjct: 729 --SHG-----------------------LTLSCAIIDSGIGVAEEDLGKLFSPFSQIDSS 763
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+R +GG+G+GLSI L M G I S + GSTF+FT V S+T E
Sbjct: 764 TTRKYGGSGLGLSICSKLCELMGGSILATSSVDEGSTFSFT-VHLKPSTTLPE------- 815
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII- 785
+ E G +++D R ++ G V D + +A+ S ++
Sbjct: 816 -----PAPELNGRYVVIIDGNVSFRHSCRRQLESWGATVIDGDDAQTAMRSLATQSTLLK 870
Query: 786 --NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
+++L+ ++V + + + LR+ + + +L + + D I +
Sbjct: 871 RCDLVLLNEQVADGNANA---MAAQLRQHPAFQHAAIAVLGTNF--EKLAQPLDEQYINA 925
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRH--------------LLLGRKI 889
+KPL S L A A+ + N +R+ P M + L+G KI
Sbjct: 926 RYLKPLASKDLIA----ALILTNHDKLRHQ--PPMLTKQDATSLSSTNSHTAPALIGHKI 979
Query: 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLM---PPHQFDACFMDIQMPEMDG 946
L+ +DN +N +V+ L G +V G A ++L + + MD QMP+MDG
Sbjct: 980 LLAEDNPINQEVSRCMLDELGISVDIANDGIMALQMLCNSDSQNPYSLILMDCQMPKMDG 1039
Query: 947 Y 947
Y
Sbjct: 1040 Y 1040
>gi|197249783|ref|YP_002147868.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197213486|gb|ACH50883.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
Length = 918
Score = 209 bits (531), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 158/525 (30%), Positives = 251/525 (47%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN + ++ G + V+P A+ + + ++V V S L
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
I+++ + +E L + + R + LLA +
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + + + +++ ++ VDDN NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDG 726
>gi|421506215|ref|ZP_15953140.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina DLHK]
gi|400342997|gb|EJO91382.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina DLHK]
Length = 835
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 161/531 (30%), Positives = 245/531 (46%), Gaps = 87/531 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
+K+A A KS+FLA +SHEIRTP+NG+LG ++L +EL QQDY+ T + S +L+
Sbjct: 193 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLATIEKSADSLL 252
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
+INEVLD +K+E+GKL LE++ FNLR +L D L++ + + +K +EL I P L
Sbjct: 253 GIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELVSLIYRDTPLAL 312
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
GDP R +Q++TNL+ N+IKFT +G I + + +E VDS +
Sbjct: 313 RGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESVDSAQ------------------ 354
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
L +SV DTG G+ E +F F Q S
Sbjct: 355 ------------------------------LRISVMDTGIGLSDEDLRALFQAFSQADNS 384
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
+SR GGTG+GL ISK L+ +M GEIG S P GS F + +++ +
Sbjct: 385 LSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLSLPKARDDADD-----LP 439
Query: 727 NQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEV---VSDQLQCLSQIASGSK 783
P QG + V++ + + + ++ G++VE + L+ + Q +
Sbjct: 440 RAP------LQGRRVAVLESHELARQALTHQLEDCGLEVESFAGLQPLLEAVRQQHQHER 493
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS-----SSRANTSTDG 838
+++ ++ + + +L +LGC K +L + S + T
Sbjct: 494 PLSLAVLGITAEQLPPEALAQHIWDLDRLGC----KTLVLCPTTELGLFHESLPDAYTQL 549
Query: 839 VSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVN 898
+ P K ++ + QR G G N P +IL VDDN N
Sbjct: 550 QAKPPCTRKLHKALVEMLCPQR--GPGEPSAPVNGRRP-----------QILCVDDNPAN 596
Query: 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QFDACFMDIQMPEMDGYE 948
L + L GA V V+ G A E + H FD FMD+QMP MDG +
Sbjct: 597 LLLVQTLLDDLGAQVTAVDSGFAAIEAVQ--HGSFDLVFMDVQMPGMDGRQ 645
>gi|168236004|ref|ZP_02661062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194737545|ref|YP_002115910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|416425307|ref|ZP_11692281.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416428914|ref|ZP_11694127.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416438966|ref|ZP_11699843.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416446200|ref|ZP_11704955.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416451592|ref|ZP_11708342.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416459829|ref|ZP_11714274.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416471831|ref|ZP_11719362.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416482580|ref|ZP_11723796.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416493065|ref|ZP_11727852.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|416498528|ref|ZP_11730321.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416504199|ref|ZP_11733146.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416515518|ref|ZP_11738645.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416527309|ref|ZP_11743147.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416533755|ref|ZP_11746573.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416546922|ref|ZP_11754316.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416549488|ref|ZP_11755331.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|416559639|ref|ZP_11760828.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416577851|ref|ZP_11770137.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416586919|ref|ZP_11775751.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416591793|ref|ZP_11778737.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416598159|ref|ZP_11782546.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416606673|ref|ZP_11787914.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416613850|ref|ZP_11792298.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416620160|ref|ZP_11795518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416634649|ref|ZP_11802629.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416636842|ref|ZP_11803266.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416647256|ref|ZP_11808255.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416657149|ref|ZP_11813605.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416670113|ref|ZP_11819827.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416674964|ref|ZP_11821287.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416693417|ref|ZP_11826736.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416706147|ref|ZP_11831406.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416712174|ref|ZP_11835885.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416718370|ref|ZP_11840478.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416723275|ref|ZP_11844040.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416733263|ref|ZP_11850354.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416740317|ref|ZP_11854364.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416746098|ref|ZP_11857676.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|416753590|ref|ZP_11860909.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|416761748|ref|ZP_11865799.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|416766552|ref|ZP_11869196.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|418481964|ref|ZP_13050987.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418490423|ref|ZP_13056968.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418495948|ref|ZP_13062386.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418498765|ref|ZP_13065179.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418505463|ref|ZP_13071809.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418510033|ref|ZP_13076324.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418512301|ref|ZP_13078544.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|418524726|ref|ZP_13090711.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|194713047|gb|ACF92268.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197290872|gb|EDY30226.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|322614233|gb|EFY11165.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322620953|gb|EFY17811.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322624016|gb|EFY20850.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322628245|gb|EFY25034.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322633364|gb|EFY30106.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636059|gb|EFY32767.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322639395|gb|EFY36083.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322643743|gb|EFY40294.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322648855|gb|EFY45302.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655152|gb|EFY51462.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658017|gb|EFY54285.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322664118|gb|EFY60317.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322667087|gb|EFY63259.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322673135|gb|EFY69242.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677874|gb|EFY73937.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322681048|gb|EFY77081.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322685645|gb|EFY81639.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323194784|gb|EFZ79971.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323196535|gb|EFZ81683.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323205052|gb|EFZ90035.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323212701|gb|EFZ97518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323214816|gb|EFZ99564.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323222545|gb|EGA06910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226425|gb|EGA10633.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323230696|gb|EGA14814.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323234953|gb|EGA19039.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323238992|gb|EGA23042.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323244650|gb|EGA28656.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323247266|gb|EGA31232.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251798|gb|EGA35663.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323257485|gb|EGA41175.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323263270|gb|EGA46807.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267522|gb|EGA51006.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323272711|gb|EGA56117.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|363556964|gb|EHL41177.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363558575|gb|EHL42766.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363563549|gb|EHL47616.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363567379|gb|EHL51377.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363569437|gb|EHL53387.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363575792|gb|EHL59641.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|366058464|gb|EHN22753.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366064697|gb|EHN28894.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366066064|gb|EHN30240.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366067770|gb|EHN31918.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366073517|gb|EHN37590.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366077633|gb|EHN41647.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|366083808|gb|EHN47724.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366830699|gb|EHN57569.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372207585|gb|EHP21084.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
Length = 918
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 158/525 (30%), Positives = 251/525 (47%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN + ++ G + V+P A+ + + ++V V S L
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
I+++ + +E L + + R + LLA +
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + + + +++ ++ VDDN NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDG 726
>gi|161501988|ref|YP_001569100.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160863335|gb|ABX19958.1| hypothetical protein SARI_00004 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 918
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 159/525 (30%), Positives = 250/525 (47%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN + ++ G + V+P A+ + + ++V V S L
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
I+++ + +E L + + R + LLA +
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + N + + + ++ VDDN NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQL-------NHHPEPLLMDASKIAMTVMAVDDNPANLKL 682
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDG 726
>gi|427657191|ref|ZP_18952846.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414045123|gb|EKT27550.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
Length = 918
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 158/525 (30%), Positives = 251/525 (47%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN + ++ G + V+P A+ + + ++V V S L
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
I+++ + +E L + + R + LLA +
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + + + +++ ++ VDDN NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDG 726
>gi|197264060|ref|ZP_03164134.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197242315|gb|EDY24935.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
Length = 918
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 158/525 (30%), Positives = 251/525 (47%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN + ++ G + V+P A+ + + ++V V S L
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
I+++ + +E L + + R + LLA +
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + + + +++ ++ VDDN NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDG 726
>gi|432490591|ref|ZP_19732456.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE213]
gi|432840617|ref|ZP_20074078.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE140]
gi|433204514|ref|ZP_20388273.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE95]
gi|431019139|gb|ELD32553.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE213]
gi|431387761|gb|ELG71581.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE140]
gi|431718667|gb|ELJ82738.1| signal transduction histidine-protein kinase BarA [Escherichia coli
KTE95]
Length = 918
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 165/535 (30%), Positives = 249/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGVLLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|62181468|ref|YP_217885.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|375115806|ref|ZP_09760976.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|62129101|gb|AAX66804.1| sensory histidine kinase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|322715952|gb|EFZ07523.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
Length = 918
Score = 209 bits (531), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 158/525 (30%), Positives = 251/525 (47%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 521
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN + ++ G + V+P A+ + + ++V V S L
Sbjct: 522 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 578
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
I+++ + +E L + + R + LLA +
Sbjct: 579 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 629
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + + + +++ ++ VDDN NLK+
Sbjct: 630 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 682
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 683 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDG 726
>gi|251788450|ref|YP_003003171.1| hybrid sensory histidine kinase BarA [Dickeya zeae Ech1591]
gi|247537071|gb|ACT05692.1| Hpt sensor hybrid histidine kinase [Dickeya zeae Ech1591]
Length = 922
Score = 209 bits (531), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 163/525 (31%), Positives = 250/525 (47%), Gaps = 77/525 (14%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + T+L TQ+DY++T + S L+
Sbjct: 281 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTQLTTTQKDYLQTIERSANNLL 340
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE + F+L LD+V+ L + + +KG+EL + I VPE
Sbjct: 341 NIINDVLDFSKLEAGKLVLENIPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQF 400
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
+GDP R +QI+TNL+GN+IKFTE+G+I I +E + L
Sbjct: 401 VGDPLRLQQIVTNLLGNAIKFTEQGNI------------DIRIEKRKQENLQVL------ 442
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
L + ++DTG GI Q+++F F Q S
Sbjct: 443 ------------------------------LEIQIKDTGIGIAEAQQTQLFQAFRQADTS 472
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN G+TF T Q+N
Sbjct: 473 ISRQHGGTGLGLVITQRLVREMGGDISFHSKPNQGTTFWCTVNL-------------QLN 519
Query: 727 N---QPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 783
+P+ QG V+ P A+ + + + V S L+ L + +
Sbjct: 520 PHMLEPDYHFDRLQGKHLAYVETNPAAAQATLDILVHTPLTVS-YSPTLEQLPE-----R 573
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
+++L+ + ++T + F +R C S + L S++ A I +
Sbjct: 574 TFDILLIGVPIHFRNTLLD--FTPQIRDF-CRLASSVILALPSMAELEAEQLM-SFGIHA 629
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903
+ KP+ + L + LQ + P+ S L L ++ VDDN NLK+
Sbjct: 630 SLSKPITAPRLLSLLQDNSLFNQDNEVHTLPPPTASFNRLPLN--VMAVDDNPANLKLIG 687
Query: 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
A L+ ++ E G A + D MDIQMP MDG +
Sbjct: 688 ALLEEQVENIILCENGADAIARAQET-RLDIILMDIQMPGMDGLQ 731
>gi|300936299|ref|ZP_07151231.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 21-1]
gi|300458551|gb|EFK22044.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Escherichia coli MS 21-1]
Length = 918
Score = 208 bits (530), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 165/535 (30%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG++L + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLKLTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|399036702|ref|ZP_10733666.1| signal transduction histidine kinase [Rhizobium sp. CF122]
gi|398065529|gb|EJL57150.1| signal transduction histidine kinase [Rhizobium sp. CF122]
Length = 946
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 154/554 (27%), Positives = 259/554 (46%), Gaps = 81/554 (14%)
Query: 413 IAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQ 472
+ + +E + L +AEAAD KS+FLA +SHEIRTPMNGVLGM ++L T+LD Q+
Sbjct: 385 VTEAKEREAELERLLSRAEAADRVKSEFLANMSHEIRTPMNGVLGMAELLAKTDLDTRQK 444
Query: 473 DYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGV 532
++ SG ALV++IN++LD +K+++G++ L +F+L ++DV +L S + +K +
Sbjct: 445 TFIDIIVKSGNALVTIINDILDFSKIDAGQMTLRRTTFDLVDAIEDVATLLSSSAAEKNI 504
Query: 533 ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592
+L V + +P +IGD GRFRQIITNL+GN++KFTE+GH+ V V
Sbjct: 505 DLLVRTAPDLPSAVIGDAGRFRQIITNLIGNAVKFTERGHVLVDV--------------- 549
Query: 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA 652
GF QD I + VEDTG GIP +
Sbjct: 550 ---------------------GFTPGAQDE------------IMASIRVEDTGIGIPGDK 576
Query: 653 QSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712
IF F Q+ S +R H GTG+GL+I+ LV G + S P GS FT F
Sbjct: 577 LESIFDKFSQIDTSSTRRHEGTGLGLAITTGLVDLFGGYLEVDSQPGEGSVFTVNLPFVV 636
Query: 713 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL 772
++ P + +G + L+VD + ++ + G D L
Sbjct: 637 AAARL----------APKPLPVNVRGARVLIVDDNAVNRQILTEQLAVWGFDGAAAGDGL 686
Query: 773 QCLSQIASGSKI---INMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISS 829
+ ++ + + ++ I+ ++++ ++ ++ + + C F+ + S+
Sbjct: 687 EAVAILEAADELGIGIDAVVLDYQM----PGMNGAEIARKLRADCRFERLPIIFLTSMDI 742
Query: 830 SRANTSTDGVSIPSVIMKPLRSSMLAASL----------QRAMGVGNKGNIRNWE---LP 876
S ++ + +MKP R+++L ++ Q A V N++ LP
Sbjct: 743 SGTEKDFAALNGQAYLMKPARANVLRNTIVDVVRTSRTKQIATAVNILPNVQETAPSLLP 802
Query: 877 SMSLRHLLLGR--KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDA 934
+ + +L+ +DN VN V L+ G + + V G++A E +
Sbjct: 803 KVESSERMPAGFIDVLVAEDNEVNQIVFKQILQETGVSFLVVSNGQEAVE-AWDRYTPRI 861
Query: 935 CFMDIQMPEMDGYE 948
MD+ MP M+G++
Sbjct: 862 IMMDVSMPVMNGHD 875
>gi|428222118|ref|YP_007106288.1| PAS domain-containing protein [Synechococcus sp. PCC 7502]
gi|427995458|gb|AFY74153.1| PAS domain S-box [Synechococcus sp. PCC 7502]
Length = 1752
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 147/441 (33%), Positives = 221/441 (50%), Gaps = 73/441 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
K+ AEA+ AKS+FLA +SHEIRTPMN V+GM D+L T+LD Q D+V T ++ G AL+
Sbjct: 1375 KEAAEASTRAKSEFLAMMSHEIRTPMNAVIGMTDLLTTTQLDEEQLDFVETIRSGGYALL 1434
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
S+IN++LD +K+E+ LEL F LRA LD + SL S K+ + + L++ + R+PETL
Sbjct: 1435 SVINDILDFSKIEANGLELALEPFGLRACLDSITSLLSAKALENNLILSIQVDRRIPETL 1494
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGD R RQI+ NL+GNS+KFTE G + V V L+ + + I+ + +
Sbjct: 1495 IGDVNRLRQILINLVGNSLKFTETGTVQVQVKLLHK--EGIDCKVQF------------- 1539
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
V DTG GI + R+F PF Q S
Sbjct: 1540 ---------------------------------DVIDTGIGIASDRLQRLFQPFQQGDSS 1566
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQ-M 725
I+R +GGTG+GL ISK L M G + S +GSTF+F T + S Q +
Sbjct: 1567 ITRRYGGTGLGLVISKRLCEIMGGNMWVKSTLGLGSTFSFMVNLRLSLETEVKQVSPQLL 1626
Query: 726 NNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKII 785
N P+S ++ L+ + I KV+ ++RLG VE+ ++ L+ L ++
Sbjct: 1627 TNLPSS-------LRILIAEDNQINQKVASTMLKRLGYDVEIANNGLEALEKMRIYP--F 1677
Query: 786 NMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTD------GV 839
++I ++ ++ E D +T +R C L I + AN STD
Sbjct: 1678 DLIFMDMQMPEMDGLTAT---RQIRSEFCLEDQPL------IVAMTANVSTDCMEECFAA 1728
Query: 840 SIPSVIMKPLRSSMLAASLQR 860
+ + KP+R L ++ +
Sbjct: 1729 GMDEFVAKPVRQDDLIKAIAK 1749
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+ILI +DN +N KVA+ LKR G V G +A E M + FD FMD+QMPEMDG
Sbjct: 1634 RILIAEDNQINQKVASTMLKRLGYDVEIANNGLEALE-KMRIYPFDLIFMDMQMPEMDG 1691
>gi|418856256|ref|ZP_13410904.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392820606|gb|EJA76456.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
Length = 909
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 158/525 (30%), Positives = 251/525 (47%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 274 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 333
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 334 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 393
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 394 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 450
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 451 DQSRLFQAFR---------------------------------------------QADAS 465
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F H + +N
Sbjct: 466 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWF-------------HINLDLN 512
Query: 727 NQPNSV-----SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASG 781
PN + ++ G + V+P A+ + + ++V V S L
Sbjct: 513 --PNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEV-VYSPTFSALPLAHYD 569
Query: 782 SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSI 841
I+++ + +E L + + R + LLA +
Sbjct: 570 IMILSVPVTFRE---------PLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGA 620
Query: 842 PSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901
+ ++KPL S+ L +L + + + +++ ++ VDDN NLK+
Sbjct: 621 AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVMAVDDNPANLKL 673
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 674 IGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDG 717
>gi|400760181|ref|YP_006589784.1| putative two-component sensor histidine kinase/response regulator
hybrid protein [Phaeobacter gallaeciensis 2.10]
gi|398655653|gb|AFO89622.1| putative two-component sensor histidine kinase/response regulator
hybrid protein [Phaeobacter gallaeciensis 2.10]
Length = 759
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 153/538 (28%), Positives = 256/538 (47%), Gaps = 74/538 (13%)
Query: 417 EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVR 476
+E + + E +K A+ A+ AKS+FLA +SHEIRTPMNGV+GM +++++T+LD Q Y
Sbjct: 220 DEREYALEEARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILETDLDEDQTMYAE 279
Query: 477 TAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAV 536
T SG AL+++IN++L+ +K+E+GK+ELE FNL+ ++DV++L S K+ +K VE+ +
Sbjct: 280 TISKSGSALLTIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAAEKNVEVTL 339
Query: 537 YISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSS 596
+PE GD GR RQI+TN+ GN++KFT KG+++ IEV E
Sbjct: 340 RYDPSLPECYEGDVGRIRQILTNVAGNAVKFTGKGYVY------------IEVSGETDDD 387
Query: 597 KNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 656
+ L +SV DTG GIP + RI
Sbjct: 388 RTALR-------------------------------------ISVTDTGAGIPDDRLDRI 410
Query: 657 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSST 716
F F Q + +R + GTG+GL+IS L+ M G I S GS FT
Sbjct: 411 FNAFEQADGAATRNYEGTGLGLAISTRLLELMGGRISVQSELGKGSVFTIDLPL------ 464
Query: 717 SNEHNSQQMNNQPNSVSS--EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQC 774
+ NQP +F+G++ALVVD + + + G+Q Q
Sbjct: 465 ------RIRPNQPKRTQDVRDFKGLRALVVDDLELNRIILTERLATWGVQSVAAGSAHQA 518
Query: 775 LSQIASG---SKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSR 831
L + ++IL + ++ D + ++ + ++ ++ +S+ ++
Sbjct: 519 LELLLDSRHDGTHYDVILQDFQMPGMDGKELAERIRDIPE----YRDLPIVILSSVENTI 574
Query: 832 ANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR-KIL 890
+ + + V +KPLR++ L + + R + + + +P + ++ K+L
Sbjct: 575 DREAREHLGHCEVALKPLRAAQLQSVMSRVLETATEEAPQ--AVPPQGVETSVVPEVKLL 632
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+ +DN N V + LK V+ G++A + H D MD+ MP DG +
Sbjct: 633 LAEDNRTNQLVVSRMLKAAPIEVLIAANGEEAVTMFQ-EHHPDIVLMDMMMPVKDGID 689
>gi|418790674|ref|ZP_13346446.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418795146|ref|ZP_13350855.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418797262|ref|ZP_13352948.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392757504|gb|EJA14391.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392759288|gb|EJA16141.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392768701|gb|EJA25447.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
Length = 918
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 162/536 (30%), Positives = 254/536 (47%), Gaps = 108/536 (20%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F V +G ST+
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
+ +PN+ +++ +V P ++ Y I L + V E ++
Sbjct: 535 AGKRLAYIEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTM 594
Query: 771 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
Q + L++ AS + + L L C Q A +
Sbjct: 595 QHERLAKAASMTDFL-----------------------LLALPCHAQIN----AEKLKQG 627
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
A + ++KPL S+ L +L + + + +++ ++
Sbjct: 628 GA---------AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVM 671
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VDDN NLK+ A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 672 AVDDNPANLKLIGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDG 726
>gi|419413942|ref|ZP_13954587.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15E]
gi|378258398|gb|EHY18221.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC15E]
Length = 918
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 165/535 (30%), Positives = 249/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GS F F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSPFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|329907837|ref|ZP_08274716.1| PAS/PAC sensor hybrid histidine kinase [Oxalobacteraceae bacterium
IMCC9480]
gi|327546908|gb|EGF31823.1| PAS/PAC sensor hybrid histidine kinase [Oxalobacteraceae bacterium
IMCC9480]
Length = 375
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 131/416 (31%), Positives = 216/416 (51%), Gaps = 53/416 (12%)
Query: 444 VSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKL 503
+SHEIRTPMNG++GM D+ +DT LD Q++Y+ + S AL+++IN++LD +K+ESGKL
Sbjct: 1 MSHEIRTPMNGIIGMTDLALDTRLDGEQREYLTLVKTSSAALLTIINDILDFSKIESGKL 60
Query: 504 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGN 563
ELE + F+L A+L ++ L + +S +KG+ L+V + VP L+GDPGR RQ++TNL+GN
Sbjct: 61 ELEHIEFDLPALLGSIVKLLALRSTEKGLHLSVDVGHDVPGMLLGDPGRLRQVLTNLIGN 120
Query: 564 SIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 623
+IKFT +G I V V L
Sbjct: 121 AIKFTAQGEITVQVTL-------------------------------------------- 136
Query: 624 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKY 683
++SA + L+ +V D G GI + Q+ IF F Q S +R +GGTG+GL+IS
Sbjct: 137 ----DAASAGTVRLVFAVSDQGIGIAADKQASIFEAFTQADTSTTRQYGGTGLGLAISSQ 192
Query: 684 LVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNN-QPNSVSSEFQGMKAL 742
LV M G +G S+ GS FTF A+F T + + N+ P+ + + L
Sbjct: 193 LVAAMDGTLGVSSVEGRGSVFTFDALFATSRPTMSTVLAGAKNDPSPSVTDAASNPLVVL 252
Query: 743 VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVS 802
V + P+ +++ +++ G + + S+ L+ ++ S ++IL++ ++ + +
Sbjct: 253 VAEDNPVNQRLAEVLLKKWGHRFSMASNGLEAIA--LSAQHDFDVILMDLQMPDMGGLEA 310
Query: 803 TLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 858
T + +L + + AN++S R G+ I KPL ++L A+L
Sbjct: 311 TRRIREREQLQGKHTPIIAMTANALSEDRQICLDAGMD--DYISKPLDVTLLRAAL 364
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+L+ +DN VN ++A LK++G G +A L H FD MD+QMP+M G E
Sbjct: 251 VLVAEDNPVNQRLAEVLLKKWGHRFSMASNGLEAIAL-SAQHDFDVILMDLQMPDMGGLE 309
>gi|207858224|ref|YP_002244875.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|436799619|ref|ZP_20523905.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|437327624|ref|ZP_20740566.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437341693|ref|ZP_20744816.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|445267608|ref|ZP_21410161.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|445336964|ref|ZP_21415849.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|206710027|emb|CAR34382.1| sensor protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|434959649|gb|ELL53095.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|435191805|gb|ELN76361.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435193359|gb|ELN77838.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|444873862|gb|ELX98141.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444888180|gb|ELY11792.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
Length = 918
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 162/536 (30%), Positives = 254/536 (47%), Gaps = 108/536 (20%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F V +G ST+
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHIHLDLNPNVIIDGPSTACL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
+ +PN+ +++ +V P ++ Y I L + V E ++
Sbjct: 535 AGKRLAYIEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTM 594
Query: 771 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
Q + L++ AS + + L L C Q A +
Sbjct: 595 QHERLAKAASMTDFL-----------------------LLALPCHAQIN----AEKLKQG 627
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
A + ++KPL S+ L +L + + + +++ ++
Sbjct: 628 GA---------AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVM 671
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VDDN NLK+ A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 672 AVDDNPANLKLIGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDG 726
>gi|421383353|ref|ZP_15833391.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|395995587|gb|EJI04651.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
Length = 918
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 162/536 (30%), Positives = 254/536 (47%), Gaps = 108/536 (20%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F V +G ST+
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHIHLDLNPNVIIDGPSTACL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
+ +PN+ +++ +V P ++ Y I L + V E ++
Sbjct: 535 AGKRLAYIEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTM 594
Query: 771 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
Q + L++ AS + + L L C Q A +
Sbjct: 595 QHERLAKAASMTDFL-----------------------LLALPCHAQIN----AEKLKQG 627
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
A + ++KPL S+ L +L + + + +++ ++
Sbjct: 628 GA---------AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVM 671
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VDDN NLK+ A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 672 AVDDNPANLKLIGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDG 726
>gi|198245109|ref|YP_002216932.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205353904|ref|YP_002227705.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|375120429|ref|ZP_09765596.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Dublin str. SD3246]
gi|375124766|ref|ZP_09769930.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|421360545|ref|ZP_15810821.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421363319|ref|ZP_15813561.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421369643|ref|ZP_15819818.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421374086|ref|ZP_15824217.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421378977|ref|ZP_15829056.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421384998|ref|ZP_15835021.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421389358|ref|ZP_15839341.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421396644|ref|ZP_15846569.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421399423|ref|ZP_15849318.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421406086|ref|ZP_15855911.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421408385|ref|ZP_15858184.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421414983|ref|ZP_15864719.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421417413|ref|ZP_15867123.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421420752|ref|ZP_15870428.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421428397|ref|ZP_15878008.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421430839|ref|ZP_15880425.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421435732|ref|ZP_15885268.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421440151|ref|ZP_15889631.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421443790|ref|ZP_15893229.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421449260|ref|ZP_15898644.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|436602026|ref|ZP_20513066.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436818420|ref|ZP_20535053.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436832643|ref|ZP_20536933.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436853010|ref|ZP_20543035.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436861201|ref|ZP_20548385.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436867569|ref|ZP_20552723.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436872914|ref|ZP_20555796.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436880416|ref|ZP_20560175.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436891539|ref|ZP_20566239.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436899554|ref|ZP_20570965.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436903064|ref|ZP_20573528.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436914851|ref|ZP_20579698.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436919551|ref|ZP_20582332.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436928842|ref|ZP_20588048.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436938545|ref|ZP_20593332.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436945893|ref|ZP_20597721.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436955357|ref|ZP_20602232.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436966089|ref|ZP_20606758.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436969519|ref|ZP_20608516.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436985293|ref|ZP_20614878.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436993430|ref|ZP_20618223.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437004874|ref|ZP_20622104.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437018709|ref|ZP_20626914.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437027425|ref|ZP_20630314.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437043065|ref|ZP_20636578.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437050739|ref|ZP_20640884.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437061971|ref|ZP_20647337.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437066887|ref|ZP_20649949.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437073886|ref|ZP_20653328.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437082971|ref|ZP_20658714.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437097712|ref|ZP_20665167.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437110497|ref|ZP_20667843.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437118916|ref|ZP_20670651.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437129456|ref|ZP_20675932.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437141834|ref|ZP_20683518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437146084|ref|ZP_20685873.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437159927|ref|ZP_20694325.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437169387|ref|ZP_20699780.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437175914|ref|ZP_20703090.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437184416|ref|ZP_20708281.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437264661|ref|ZP_20719937.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437269480|ref|ZP_20722723.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437277691|ref|ZP_20727050.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437315792|ref|ZP_20737480.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437417449|ref|ZP_20753868.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437463297|ref|ZP_20762979.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437480007|ref|ZP_20768255.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437495814|ref|ZP_20772958.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437509365|ref|ZP_20776504.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437532862|ref|ZP_20780965.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437555663|ref|ZP_20784630.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437580414|ref|ZP_20791817.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437592576|ref|ZP_20795125.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437605158|ref|ZP_20799337.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437650084|ref|ZP_20809715.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437655967|ref|ZP_20810563.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437679584|ref|ZP_20818074.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437692352|ref|ZP_20821172.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437714186|ref|ZP_20827590.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|437729860|ref|ZP_20830992.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|437765487|ref|ZP_20835106.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|438090977|ref|ZP_20860707.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438101634|ref|ZP_20864461.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438116202|ref|ZP_20870721.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|438144756|ref|ZP_20875701.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|445128225|ref|ZP_21380117.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|445145461|ref|ZP_21387423.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445151337|ref|ZP_21390287.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445171253|ref|ZP_21396079.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445204238|ref|ZP_21401228.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445219252|ref|ZP_21402634.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445345456|ref|ZP_21418152.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445362071|ref|ZP_21424064.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|197939625|gb|ACH76958.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|205273685|emb|CAR38675.1| sensor protein [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|326624696|gb|EGE31041.1| signal transduction histidine-protein kinase BarA [Salmonella
enterica subsp. enterica serovar Dublin str. SD3246]
gi|326629016|gb|EGE35359.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|395981112|gb|EJH90334.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|395981766|gb|EJH90987.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395987780|gb|EJH96942.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395994210|gb|EJI03286.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|395995312|gb|EJI04377.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|396009098|gb|EJI18031.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396016917|gb|EJI25783.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396018630|gb|EJI27492.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396022314|gb|EJI31128.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396027517|gb|EJI36280.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396027800|gb|EJI36562.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396035018|gb|EJI43699.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396042248|gb|EJI50870.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396043797|gb|EJI52395.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396048432|gb|EJI56981.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396054665|gb|EJI63157.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396056144|gb|EJI64620.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396068286|gb|EJI76634.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|396069421|gb|EJI77759.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396070557|gb|EJI78885.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|434938986|gb|ELL45876.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|434970964|gb|ELL63525.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434974575|gb|ELL66919.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434981242|gb|ELL73129.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434984355|gb|ELL76095.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434985645|gb|ELL77332.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434992721|gb|ELL84160.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|434999771|gb|ELL90945.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|435005260|gb|ELL96182.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435005668|gb|ELL96588.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435012689|gb|ELM03364.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435019494|gb|ELM09938.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435022933|gb|ELM13229.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435029386|gb|ELM19444.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435033532|gb|ELM23424.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435034069|gb|ELM23959.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435035465|gb|ELM25310.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435045733|gb|ELM35359.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435046499|gb|ELM36114.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435058837|gb|ELM48144.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435062923|gb|ELM52097.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435065107|gb|ELM54213.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435072165|gb|ELM61094.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435081069|gb|ELM69723.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435083715|gb|ELM72316.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435085484|gb|ELM74037.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435088455|gb|ELM76912.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435093443|gb|ELM81783.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435097693|gb|ELM85952.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435106356|gb|ELM94373.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435107687|gb|ELM95670.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435108544|gb|ELM96509.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435118747|gb|ELN06398.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435126676|gb|ELN14070.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435128002|gb|ELN15362.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435131638|gb|ELN18849.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435136329|gb|ELN23419.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435148706|gb|ELN35422.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435149115|gb|ELN35829.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435156585|gb|ELN43075.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435159668|gb|ELN45986.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435161027|gb|ELN47269.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435172427|gb|ELN57970.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435173087|gb|ELN58612.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435180268|gb|ELN65376.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435202084|gb|ELN85938.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435218574|gb|ELO00975.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435219036|gb|ELO01413.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435226604|gb|ELO08169.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435232648|gb|ELO13737.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435240665|gb|ELO21055.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435242113|gb|ELO22424.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435242411|gb|ELO22716.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435252925|gb|ELO32416.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435257101|gb|ELO36395.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435268018|gb|ELO46648.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435272524|gb|ELO50916.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435272646|gb|ELO51035.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435279984|gb|ELO57721.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435286131|gb|ELO63464.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435289972|gb|ELO66922.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435307929|gb|ELO82958.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435316025|gb|ELO89222.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435324317|gb|ELO96250.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435327717|gb|ELO99368.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|444846234|gb|ELX71415.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444855094|gb|ELX80146.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|444856237|gb|ELX81275.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444861541|gb|ELX86417.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444861925|gb|ELX86794.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444871165|gb|ELX95615.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444878999|gb|ELY03108.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444884381|gb|ELY08216.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
Length = 918
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 162/536 (30%), Positives = 254/536 (47%), Gaps = 108/536 (20%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL+ TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR LD+V++L + S DKG+EL + I + VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q+ITNL+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F V +G ST+
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHIHLDLNPNVIIDGPSTACL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQV---EVVSD 770
+ +PN+ +++ +V P ++ Y I L + V E ++
Sbjct: 535 AGKRLAYIEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTM 594
Query: 771 QLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
Q + L++ AS + + L L C Q A +
Sbjct: 595 QHERLAKAASMTDFL-----------------------LLALPCHAQIN----AEKLKQG 627
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
A + ++KPL S+ L +L + + + +++ ++
Sbjct: 628 GA---------AACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITM-------TVM 671
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VDDN NLK+ A L+ V + G +A + QFD MDIQMP+MDG
Sbjct: 672 AVDDNPANLKLIGALLEDKVQHVELCDSGHQAVD-RAKQMQFDLILMDIQMPDMDG 726
>gi|444376474|ref|ZP_21175718.1| BarA sensory histidine kinase [Enterovibrio sp. AK16]
gi|443679452|gb|ELT86108.1| BarA sensory histidine kinase [Enterovibrio sp. AK16]
Length = 914
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 158/525 (30%), Positives = 255/525 (48%), Gaps = 86/525 (16%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK A+ A KS+FLA +SHE+RTP+NGV+G ++ T L +QQDY++T + S L+
Sbjct: 277 KKNAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTHLSSSQQDYLQTIEKSANNLL 336
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN++LD +K+E+GKL LE + F+ L++V+ L + + +KG+EL + I R+P +
Sbjct: 337 TIINDILDFSKLEAGKLLLENIPFDFEDSLEEVMRLLAPMAHEKGLELNLRIDPRIPAGV 396
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +Q++TNL+GN+ KFTE+GHI V+V L ++ + +E++ + +G ++
Sbjct: 397 IGDPLRIQQVLTNLIGNATKFTERGHISVSVELKQQRDERLELQFVIRD-----TGIGIS 451
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
+R S ++F F Q S
Sbjct: 452 ERQQS-------------------------------------------QLFQAFRQADAS 468
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMN 726
ISR +GGTG+GL I++ LV +M G+IGF S + GSTF FT S
Sbjct: 469 ISRRYGGTGLGLVITQKLVQQMGGDIGFSSRLHQGSTFWFTM-------------SLIQT 515
Query: 727 NQP--NSVSSE-FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSK 783
+ P + + S+ QG ++++P + R + I +SD +++ S+
Sbjct: 516 DLPLVHPIDSDALQGQSLMLIEPDHESRLMMRERLAHFDI---ALSD----FAELPETSE 568
Query: 784 IINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843
++ +L+ V D S + ++ + +F L + + GV+ +
Sbjct: 569 RVSSVLI--CVDAVDVPESDALIAQAKRAEAFSERVIFCLPTTELALSEALLASGVA--A 624
Query: 844 VIMKPLRSSMLAASLQRAMGVGNKGNIRNWEL--PSMSLRHLLLGRKILIVDDNNVNLKV 901
+ KPL L LQ G ++ L P++ + ++ VDDN NLK+
Sbjct: 625 CLAKPLSVRKLIEQLQ--------GEQQSLALLPPAVEVHTDKAPLTVMAVDDNPANLKL 676
Query: 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
A LK V GK A + H FD MDIQMPEMDG
Sbjct: 677 ITALLKERVTTVFTASDGKAALDCAQKQH-FDLILMDIQMPEMDG 720
>gi|419361391|ref|ZP_13902604.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13D]
gi|378201594|gb|EHX62037.1| hybrid sensory histidine kinase, in two-component regulatory system
with UvrY [Escherichia coli DEC13D]
Length = 918
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 165/535 (30%), Positives = 250/535 (46%), Gaps = 106/535 (19%)
Query: 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486
KK+A+ A KS+FLA +SHE+RTP+NGV+G + + TEL TQ+D++ T + S L+
Sbjct: 283 KKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLL 342
Query: 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETL 546
++IN+VLD +K+E+GKL LE++ F LR+ LD+V++L + S DKG+EL + I VP+ +
Sbjct: 343 AIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNV 402
Query: 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVA 606
IGDP R +QIIT+L+GN+IKFTE G+I + V +++E ++ ++T G P
Sbjct: 403 IGDPLRLQQIITSLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQI---RDTGIGIPER 459
Query: 607 DRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666
D+ ++ F+ Q S
Sbjct: 460 DQSRLFQAFR---------------------------------------------QADAS 474
Query: 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF-------TAVFGNGSSTSNE 719
ISR HGGTG+GL I++ LV M G+I F S PN GSTF F + G ST
Sbjct: 475 ISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCL 534
Query: 720 HNSQQMNNQPNSVSSEF------QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQ 773
+ +PNS +++ + +V P + Y + LGI V
Sbjct: 535 AGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREP--- 591
Query: 774 CLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRAN 833
+ ++ E K S++ + L C Q +
Sbjct: 592 --------------LTMQHERLAKAVSMTDFL---MLALPCHAQ-----------VNAEK 623
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
DG+ + ++KPL + L +L + +N LP L + ++ VD
Sbjct: 624 LKQDGIG--ACLLKPLTPTRLLPALTEFC-----HHKQNTLLPVTDESKLAM--TVMAVD 674
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQMPEMDG 946
DN NLK+ A L+ V + G +A E MP FD MDIQMP+MDG
Sbjct: 675 DNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP---FDLILMDIQMPDMDG 726
>gi|343514885|ref|ZP_08751950.1| hybrid sensory histidine kinase BarA [Vibrio sp. N418]
gi|342799251|gb|EGU34826.1| hybrid sensory histidine kinase BarA [Vibrio sp. N418]
Length = 929
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 174/596 (29%), Positives = 279/596 (46%), Gaps = 93/596 (15%)
Query: 364 NFGDPFRKHEMRCRFKQKAPWPLLAISTSIGILVIASLVGH------IFQATVNRIAKVE 417
N D R+ + R + K L + I + ++ H I QAT + +E
Sbjct: 208 NMVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLE 267
Query: 418 EDYHGMMEL---KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDY 474
+ +EL KK+A+ A KS+FLA +SHE+RTP+NGV+G ++ T+L +Q DY
Sbjct: 268 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTKLSNSQTDY 327
Query: 475 VRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVEL 534
++T + S L+++IN++LD +K+E+GKL LE + F + L++V++L + + +KG+E+
Sbjct: 328 LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQETLEEVVNLQATSAHEKGLEI 387
Query: 535 AVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594
+ I +VP L+GDP R +Q++TNL+GNSIKFTE+G+I ++V L + D +E++
Sbjct: 388 TLKIDPKVPIGLVGDPLRIQQVLTNLVGNSIKFTERGNIDISVELRSQKEDVVELQ---- 443
Query: 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQS 654
V DTG GI Q+
Sbjct: 444 --------------------------------------------FMVRDTGIGISERQQA 459
Query: 655 RIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714
++F F Q SISR +GGTG+GL I++ LV +M GEI S + GSTF FT
Sbjct: 460 QLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLHATD 519
Query: 715 STSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS---DQ 771
+E Q+ NQ L+V+P A ++R + + G+ V S D+
Sbjct: 520 MPMSELIESQVLNQ----------RSLLLVEPNMQAASITRQTLAQQGLVVTYRSSMPDE 569
Query: 772 LQCLSQIASGSKIINMIL-VEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSS 830
++ + ++N+ EV + + V + + + L L + I
Sbjct: 570 VETFDYV-----LLNLAPNRSNEVGKVEKQVEQALLCAPHVVVGTPSTALALSDHLIQKY 624
Query: 831 RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKIL 890
+ + T KPL L +L N+ ++ E+ + + L ++
Sbjct: 625 QIHCVT----------KPLSRKKLLQTL-----AANQESLPEIEI-EIPINTETLPLTVM 668
Query: 891 IVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
VDDN NLK+ +A L V+ GK A + H FD MDIQMP MDG
Sbjct: 669 AVDDNPANLKLISALLDERVEHVITCTNGKDAVKQAEVRH-FDIILMDIQMPHMDG 723
>gi|336313917|ref|ZP_08568839.1| PAS domain S-box/PAS domain S-box [Rheinheimera sp. A13L]
gi|335881856|gb|EGM79733.1| PAS domain S-box/PAS domain S-box [Rheinheimera sp. A13L]
Length = 1493
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 156/536 (29%), Positives = 268/536 (50%), Gaps = 80/536 (14%)
Query: 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASG 482
+ + +++A++A+ AKS FLAT+SHEIRTPMN +LGML ++ T L Q+DY+R + +
Sbjct: 744 LAQARQQADSANNAKSAFLATMSHEIRTPMNAILGMLQLVQQTSLTRRQEDYIRQTEIAA 803
Query: 483 KALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRV 542
K+L++++N++LD +KVE+GKLE+++ SF L +++D+ ++ S K +E+ ++ +
Sbjct: 804 KSLLAILNDILDFSKVEAGKLEMDSHSFELAILMEDLGTILSANLGSKDLEVLYQFAEDL 863
Query: 543 PETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSG 602
P+ ++GD R +Q++ NL GN+IKFT+ G + V++ + E ++ +++
Sbjct: 864 PQLVVGDSLRLKQVLLNLTGNAIKFTDNGEVVVSLEVTERTAEAAKIK------------ 911
Query: 603 YPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662
FK V+DTG G+ + + IF F Q
Sbjct: 912 ------------FK------------------------VQDTGIGMTEQQLALIFQSFSQ 935
Query: 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNS 722
SISR +GGTG+GL+ISK LV M G++ S GS+F F F N
Sbjct: 936 AESSISRRYGGTGLGLAISKGLVELMGGQLSVQSTLGSGSSFEFELWF----------NC 985
Query: 723 QQMNNQPNSVSSEFQGMKALVVD----PRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQI 778
+N +S Q +K LVVD R I ++V R++ G +V++ Q L ++
Sbjct: 986 LSLNAAQADLSL-LQDLKVLVVDDNQQSRQILSEVMRHY----GCEVDLAHSGEQAL-EL 1039
Query: 779 ASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANS-----ISSSRAN 833
S ++L++ W +R++ G + ++ + ++ + +
Sbjct: 1040 LQHSNSYKLVLLD---WLMPGLDGWQTAEKIRQIVQGPDMPVVIMVTAHGRECLAQKQQD 1096
Query: 834 TSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVD 893
+ + + I+KP+ S L ++ A+ K N + + L G ++L+V+
Sbjct: 1097 EQSQNL-LNGFIVKPVTPSRLLDAVLDAL--AGKQMFSNALQDAAPRQSRLNGLQLLLVE 1153
Query: 894 DNNVNLKVAAAGLKRYGAAVVCVERGKKATELL-MPPHQFDACFMDIQMPEMDGYE 948
DN N VA+ L GA V G A +L P ++D MDIQMP+MDGYE
Sbjct: 1154 DNPTNQIVASELLGHEGALVDIAPGGTFALAMLEQQPDKYDLVLMDIQMPDMDGYE 1209
>gi|424043145|ref|ZP_17780785.1| his Kinase A domain protein [Vibrio cholerae HENC-03]
gi|408889449|gb|EKM27866.1| his Kinase A domain protein [Vibrio cholerae HENC-03]
Length = 1187
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 182/628 (28%), Positives = 297/628 (47%), Gaps = 103/628 (16%)
Query: 332 FVNVYDITNLSHPIS---MYGSNVSDDGLWLVSTLNFGDPFRKHEMRCRFKQKAPWPLLA 388
F++V +++ + I+ + + +DD L + L F + +FKQ + + L
Sbjct: 388 FLDVVEVSQQLNDIAGKMVMAATKADDQLDHLRELRFAEV-------SQFKQVSQY--LI 438
Query: 389 ISTSIGILVIASLVGHIFQATVNRIAKVEEDYHG--MMELKKKAEAADVAKSQFLATVSH 446
S + IL I I A R +++E + E + AE+A+ AKS FLA +SH
Sbjct: 439 YSAFVFILAI------ILLAYTMRRSQIELQAMAATLQEARDDAESANQAKSSFLANMSH 492
Query: 447 EIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELE 506
EIRTPMN ++GM +++++EL+ Q++Y+ S K+L+ L+N++LD +KVE+GKLELE
Sbjct: 493 EIRTPMNAIIGMSHLVLESELNKHQKNYIEKVHRSAKSLLRLLNDILDFSKVEAGKLELE 552
Query: 507 AVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK 566
F+L +LD + + S KSQDK ++L + + +P+TLIGDP R +QII NL N+IK
Sbjct: 553 RTPFSLDELLDQAIDILSVKSQDKSLDLLLSVDQNLPQTLIGDPYRVKQIILNLGFNAIK 612
Query: 567 FTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 626
FT +G + + + L+ + K + T
Sbjct: 613 FTHQGKVTLRLNLLRKT-----------------------------KQYST--------- 634
Query: 627 FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVG 686
L + VED G G+ +++F F Q S +R +GG+G+GL+I+K ++
Sbjct: 635 ----------LELVVEDEGIGMTPGQINKLFNSFSQADTSTTRKYGGSGLGLAITKNIID 684
Query: 687 RMKGEIGFVSIPNIGSTFT--FTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVV 744
MKG I S GSTF F + N + ++ PN +A +V
Sbjct: 685 LMKGTISVTSTLGKGSTFKVQFELEYCN-----EDVPCPNFDHVPN---------RAFLV 730
Query: 745 DPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTL 804
D + + +Q+L IQ E +D + ++ + L Q + + T
Sbjct: 731 DACKESRLLIQGQLQQLNIQCEDFADLKDMIDSELKLPPLLLVTLPAQ------SHLITK 784
Query: 805 FVNNLRKLGCGFQSKLFLLAN-SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863
++ LR L SK+ L+ N S++ + V ++ KP +++L+ L
Sbjct: 785 MLSQLRSLDVP-NSKVLLVTNTSVAHVLHQLDSIDVKYDELLRKPFTTTVLSECLDTLFQ 843
Query: 864 VGNKGNIRNWELPS---MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGK 920
E PS S L ++IL+V+D+ +N ++ L G V GK
Sbjct: 844 -------SESEAPSPATTSSGSSLTKKRILVVEDHRINQELVRDVLVNVGCVVQIANHGK 896
Query: 921 KATELLMPPHQFDACFMDIQMPEMDGYE 948
+A ELL+ H FDA MD QMP MDGY+
Sbjct: 897 EALELLV-KHNFDAVLMDCQMPIMDGYQ 923
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,730,975,925
Number of Sequences: 23463169
Number of extensions: 600461706
Number of successful extensions: 1937396
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 37604
Number of HSP's successfully gapped in prelim test: 37898
Number of HSP's that attempted gapping in prelim test: 1720043
Number of HSP's gapped (non-prelim): 179509
length of query: 993
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 840
effective length of database: 8,769,330,510
effective search space: 7366237628400
effective search space used: 7366237628400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 82 (36.2 bits)