BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001941
(993 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T4J|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
pdb|3T4J|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Isopentenyl Adenine
pdb|3T4K|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
pdb|3T4K|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With N- Benzyladenine
pdb|3T4L|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
pdb|3T4L|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin
pdb|3T4O|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
pdb|3T4O|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Dihydrozeatin
pdb|3T4Q|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
pdb|3T4Q|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Trans- Zeatin Riboside (Hydrolysed)
pdb|3T4S|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
pdb|3T4S|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Kinetin
pdb|3T4T|A Chain A, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
pdb|3T4T|B Chain B, Arabidopsis Histidine Kinase 4 Sensor Domain In Complex
With Thiadiazuron
Length = 270
Score = 357 bits (917), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 174/271 (64%), Positives = 208/271 (76%), Gaps = 10/271 (3%)
Query: 114 KRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTA 173
+R E L SMCD+RARMLQDQF+VS+NHV A++IL+STFH+ KNPSAIDQ TF YT RTA
Sbjct: 8 RREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFAEYTARTA 67
Query: 174 FERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFA 233
FERPL SGVAYA +V+ ERE FE+Q W IK MD + EPSP+ +EYAPVIF+
Sbjct: 68 FERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMD--------RGEPSPVRDEYAPVIFS 119
Query: 234 QDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPS 293
QD+VS++ SLDM+SG+EDREN+LRAR +GK VLT+PFRLL+T+ LGV+LTF VYK LP
Sbjct: 120 QDSVSYLESLDMMSGEEDRENILRARETGKAVLTSPFRLLETHHLGVVLTFPVYKSSLPE 179
Query: 294 NATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSN-- 351
N T ERI AT GYLGG FD+ESLVE LL QLA Q I V+VYDITN S P+ MYG+
Sbjct: 180 NPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLVMYGNQDE 239
Query: 352 VSDDGLWLVSTLNFGDPFRKHEMRCRFKQKA 382
+D L S L+FGDPFRKH+M CR+ QKA
Sbjct: 240 EADRSLSHESKLDFGDPFRKHKMICRYHQKA 270
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
pdb|4EW8|B Chain B, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
Length = 268
Score = 73.2 bits (178), Expect = 6e-13, Method: Composition-based stats.
Identities = 68/274 (24%), Positives = 113/274 (41%), Gaps = 60/274 (21%)
Query: 433 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINE 491
A+ K F+ VS+E+RTP+ ++G ++L + + +++V +A+ L I++
Sbjct: 36 AERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDD 95
Query: 492 VLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG 551
VLD A++++G++ LE + +L + +Q GV LAV + V + GD
Sbjct: 96 VLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDV-GLIRGDGK 154
Query: 552 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHS 611
R Q + +L+ +N L P R
Sbjct: 155 RLAQTLDHLV-----------------------------------ENALRQTPPGGRVTL 179
Query: 612 WKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTH 671
S+ L + + V DTG+G+P Q+ IF F + R
Sbjct: 180 -----------------SARRALGEVRLDVSDTGRGVPFHVQAHIFDRF------VGRDR 216
Query: 672 GGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 705
GG G+GL++ K LV G + S P GSTFT
Sbjct: 217 GGPGLGLALVKALVELHGGWVALESEPGNGSTFT 250
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor
Histidine Kinase Protein
Length = 258
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 122/276 (44%), Gaps = 56/276 (20%)
Query: 434 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDV-TQQDYVRTAQASGKALVSLIN 490
D K++F+A +SHE+RTP+ + + + ++ ELD+ T ++++ L +L+N
Sbjct: 17 DRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLN 76
Query: 491 EVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP 550
E+LD +++E L++ +L +++ ++ + V + + P DP
Sbjct: 77 ELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDP 136
Query: 551 GRFRQIITNLMGNSIKFTEKG--HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
R RQ++ NL+ N +K+++K +V V L E
Sbjct: 137 TRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDE--------------------------- 169
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
+DG +++ VED G GIP A+ RIF F +V S++
Sbjct: 170 -----------KDGG-------------VLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLT 205
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
GTG+GL+I+K +V G I S GS F
Sbjct: 206 YEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRF 241
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 258
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 122/276 (44%), Gaps = 56/276 (20%)
Query: 434 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDV-TQQDYVRTAQASGKALVSLIN 490
D K++F+A +SHE+RTP+ + + + ++ ELD+ T ++++ L +L+N
Sbjct: 17 DRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLN 76
Query: 491 EVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP 550
E+LD +++E L++ +L +++ ++ + V + + P DP
Sbjct: 77 ELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDP 136
Query: 551 GRFRQIITNLMGNSIKFTEKG--HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADR 608
R RQ++ NL+ N +K+++K +V V L E
Sbjct: 137 TRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDE--------------------------- 169
Query: 609 CHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668
+DG +++ VED G GIP A+ RIF F +V S++
Sbjct: 170 -----------KDGG-------------VLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLT 205
Query: 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704
GTG+GL+I+K +V G I S GS F
Sbjct: 206 YEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRF 241
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 53/99 (53%), Gaps = 17/99 (17%)
Query: 864 VGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVV--CVERGKK 921
+GN + + PS L G+++L+VDDN ++ KVA LK+ G + V C + GK+
Sbjct: 41 IGNPEDEQETSKPSDD--EFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQC-DSGKE 97
Query: 922 A----TELLMPPHQ--------FDACFMDIQMPEMDGYE 948
A TE L + FD FMD QMPEMDGYE
Sbjct: 98 ALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYE 136
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine
Kinase Walk (yycg) Domain
Length = 177
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 637 LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVS 696
L +SV+D G GIP + ++F F +V + +R GGTG+GL+I+K +V G+I S
Sbjct: 78 LYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADS 137
Query: 697 IPNIGSTFTFT 707
I G+T TFT
Sbjct: 138 IEGKGTTITFT 148
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
Length = 349
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 102/250 (40%), Gaps = 67/250 (26%)
Query: 439 QFLATVSHEIRTPMNGVLGMLDMLMDTELD--VTQQDYVRTAQASGKALVSLINEVLDQA 496
+ A V+HEIR P+ ++G M M LD T + Y+ L +++ E+L+ +
Sbjct: 134 EMTARVAHEIRNPIT-IIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYS 192
Query: 497 KVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI 556
K + LE FNL ++ +V LF K + ++ + +D + D R +Q+
Sbjct: 193 K---ERQVLEFTEFNLNELIREVYVLFEEKIRKMNIDFC-FETDNEDLRVEADRTRIKQV 248
Query: 557 ITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFK 616
+ NL+ N+I+ T
Sbjct: 249 LINLVQNAIEAT------------------------------------------------ 260
Query: 617 TFNQDGSTSPFKSSSADLINLI-VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675
G K +S D+ + VSV ++G IP E + +IF+PF ++T GTG
Sbjct: 261 -----GENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFT-----TKTQ-GTG 309
Query: 676 IGLSISKYLV 685
+GLSI + ++
Sbjct: 310 LGLSICRKII 319
>pdb|1R62|A Chain A, Crystal Structure Of The C-terminal Domain Of The
Two-component System Transmitter Protein Nrii (ntrb)
Length = 160
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 639 VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 698
+ VED G GIP Q +F P +S GGTG+GLSI++ L+ + G+I F S P
Sbjct: 94 IDVEDNGPGIPPHLQDTLFYPM------VSGREGGTGLGLSIARNLIDQHSGKIEFTSWP 147
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 18/92 (19%)
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF--DACFMDIQMP 942
+ +K+L+VDD+ V K+ + LK+ G V+ E G+ A E L +F D +DI MP
Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL---SEFTPDLIVLDIMMP 57
Query: 943 EMDGYEMLPCFESFLLIAILVWKLNLKISWKR 974
MDG+ +L KL K WKR
Sbjct: 58 VMDGFTVLK-------------KLQEKEEWKR 76
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
pdb|3D36|B Chain B, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
Length = 244
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV-TQQDYVRTAQASGKALVSLINEVLD 494
A + A++SHEIR P+ G + ++ + L ++ Y R A ++I + L
Sbjct: 13 AVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLT 72
Query: 495 QAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFR 554
AK E V + ++D + L + D LA P ++IG+ +FR
Sbjct: 73 FAKPAPETPEKLNVKLEIERVIDILRPLANMSCVDIQATLA-------PFSVIGEREKFR 125
Query: 555 QIITNLMGNSIKFTEKG---HIFVTV 577
Q + N+M N+I+ G ++V++
Sbjct: 126 QCLLNVMKNAIEAMPNGGTLQVYVSI 151
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+LI +DN++ VAA L++ + V G +A + QFD MDIQMP MDG E
Sbjct: 13 VLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN-RQFDVIIMDIQMPVMDGLE 71
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQF--DACFMDIQMP 942
+ +K+L+VDD+ V K+ + LK+ G V+ E G+ A E L +F D + I MP
Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL---SEFTPDLIVLXIMMP 57
Query: 943 EMDGYEMLPCFESFLLIAILVWKLNLKISWKR 974
MDG+ +L KL K WKR
Sbjct: 58 VMDGFTVLK-------------KLQEKEEWKR 76
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 876 PSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC 935
P + R + ++L+ DD+ N V L++ G V+CV ++ + M +DA
Sbjct: 4 PFLRHRARVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDA-MAEEDYDAV 62
Query: 936 FMDIQMPEMDGYEML 950
+D+ MP M+G +ML
Sbjct: 63 IVDLHMPGMNGLDML 77
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
KIL+V+DN +N+ VA + +K+ G + G +A + +D MD+ MP +DG
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAI-NSSSYDLVLMDVCMPVLDGL 68
Query: 948 EMLPCFESF 956
+ S+
Sbjct: 69 KATRLIRSY 77
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 888 KILIVDDNNVNLKVAA-----AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
KIL+V+DN+VN +V G++ A E K EL ++ FMD+QMP
Sbjct: 4 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP 63
Query: 943 EMDG 946
++DG
Sbjct: 64 KVDG 67
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 888 KILIVDDNNVNLKVAA-----AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942
KIL+V+DN+VN +V G++ A E K EL ++ FMD+QMP
Sbjct: 3 KILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMP 62
Query: 943 EMDG 946
++DG
Sbjct: 63 KVDG 66
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
+ +KIL+VDD + L++ G V C G +A E++ Q D +DI +P
Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV-EELQPDLILLDIMLPNK 59
Query: 945 DGYEM 949
DG E+
Sbjct: 60 DGVEV 64
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
+ +KIL+VDD + L++ G V C G +A E++ Q D +DI +P
Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV-EELQPDLILLDIMLPNK 59
Query: 945 DGYEM 949
DG E+
Sbjct: 60 DGVEV 64
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 37.7 bits (86), Expect = 0.029, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
IL+VDD+ +N ++ A L G G A +L H D D+ MP MDGY
Sbjct: 11 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH-IDIVLSDVNMPNMDGYR 69
Query: 949 M 949
+
Sbjct: 70 L 70
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
IL+VDD+ +N ++ A L G G A +L H D D+ MP MDGY
Sbjct: 132 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH-IDIVLSDVNMPNMDGYR 190
Query: 949 M 949
+
Sbjct: 191 L 191
>pdb|1JM6|A Chain A, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|1JM6|B Chain B, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|3CRK|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex
Length = 407
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT-----GIGLSISKYLVGRMKG 690
+L + + D G G+PL R+F+ P+ GGT G GL IS+ +G
Sbjct: 283 DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQG 342
Query: 691 EIGFVSIPNIGS 702
++ S+ G+
Sbjct: 343 DLQLFSMEGFGT 354
>pdb|3A0T|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) In
Complex With Adp And Mg Ion (Trigonal)
pdb|3A0W|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0W|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0X|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 1: Ammomium Phosphate, Monoclinic)
pdb|3A0Y|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Y|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Z|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
pdb|3A0Z|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
Length = 152
Score = 37.4 bits (85), Expect = 0.039, Method: Composition-based stats.
Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 61/182 (33%)
Query: 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNS 564
+E FNL ++ +V LF K + ++ + +D + D R +Q++ NL+ N+
Sbjct: 1 MEFTEFNLNELIREVYVLFEEKIRKMNIDFC-FETDNEDLRVEADRTRIKQVLINLVQNA 59
Query: 565 IKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624
I+ T G
Sbjct: 60 IEAT-----------------------------------------------------GEN 66
Query: 625 SPFKSSSADLINLI-VSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKY 683
K +S D+ + VSV ++G IP E + +IF+PF ++T GTG+GLSI +
Sbjct: 67 GKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFT-----TKTQ-GTGLGLSICRK 120
Query: 684 LV 685
++
Sbjct: 121 II 122
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+K+LIV+DN +N+K+ L+ G + G A + ++ D MDIQ+PE+ G
Sbjct: 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAR-ENKPDLILMDIQLPEISG 60
Query: 947 YEM 949
E+
Sbjct: 61 LEV 63
>pdb|2BTZ|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU2|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU5|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU6|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU7|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU8|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
Length = 394
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT-----GIGLSISKYLVGRMKG 690
+L + + D G G+PL R+F+ P+ GGT G GL IS+ +G
Sbjct: 270 DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQG 329
Query: 691 EIGFVSIPNIGS 702
++ S+ G+
Sbjct: 330 DLQLFSMEGFGT 341
>pdb|1Y8N|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|A Chain A, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|A Chain A, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|B Chain B, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|E Chain E, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|F Chain F, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 419
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 636 NLIVSVEDTGQGIPLEAQSRIF------TPFMQVGPSISRTHGGTGIGLSISKYLVGRMK 689
+L + + D G G+PL R+F P + P+ + G G GL IS+ +
Sbjct: 293 DLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQ 352
Query: 690 GEIGFVSIPNIGS 702
G++ S+ +G+
Sbjct: 353 GDLKLYSMEGVGT 365
>pdb|1BXD|A Chain A, Nmr Structure Of The Histidine Kinase Domain Of The E.
Coli Osmosensor Envz
Length = 161
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 641 VEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKG 690
VED G GI E + +F PF++ G S +RT GTG+GL+I + +V G
Sbjct: 82 VEDDGPGIAPEQRKHLFQPFVR-GDS-ARTISGTGLGLAIVQRIVDNHNG 129
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+KILIVDD + + + G VV G++A E Q D +D+ +PE+DG
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQF-EAEQPDIIILDLMLPEIDG 60
Query: 947 YEM 949
E+
Sbjct: 61 LEV 63
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMD 945
G K+L++D+N V+ V L G V V ++ ++ H+ FMD+ MP ++
Sbjct: 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVV--SHEHKVVFMDVCMPGVE 64
Query: 946 GYEM 949
Y++
Sbjct: 65 NYQI 68
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 734 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINM 787
S F G+K LV+D + V++ + LG +V VS +CL ++ K++ M
Sbjct: 3 SNFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHKVVFM 56
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL--MPPHQFDACFMDIQM 941
L+G++ILIV+D V + + GA V G A ELL P D DI M
Sbjct: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP---DLMICDIAM 61
Query: 942 PEMDGYEML 950
P M+G ++L
Sbjct: 62 PRMNGLKLL 70
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 878 MSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937
MSL+ +KILIV+D+ K A L +YG V G+ A E + D M
Sbjct: 1 MSLKD----KKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILM 56
Query: 938 DIQMPE-MDGYE 948
DI++ E MDG +
Sbjct: 57 DIELGEGMDGVQ 68
>pdb|2ZKJ|A Chain A, Crystal Structure Of Human Pdk4-Adp Complex
pdb|2ZKJ|B Chain B, Crystal Structure Of Human Pdk4-Adp Complex
pdb|3D2R|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
pdb|3D2R|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
Length = 394
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI----SRTH--GGTGIGLSISKYLVGRMK 689
+L + + D G G+PL R+F+ P+ SR G G GL IS+ +
Sbjct: 269 DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQ 328
Query: 690 GEIGFVSIPNIGS 702
G++ S+ G+
Sbjct: 329 GDLNLYSLSGYGT 341
>pdb|2E0A|A Chain A, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2E0A|B Chain B, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2ZDX|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDX|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
Length = 394
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI----SRTH--GGTGIGLSISKYLVGRMK 689
+L + + D G G+PL R+F+ P+ SR G G GL IS+ +
Sbjct: 269 DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQ 328
Query: 690 GEIGFVSIPNIGS 702
G++ S+ G+
Sbjct: 329 GDLNLYSLSGYGT 341
>pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bond Conformation Of
Phoq Kinase Domain
Length = 152
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEI 692
+L + VED G GIPL + IF G + G G+GL++++ + + +G+I
Sbjct: 74 HLYIVVEDDGPGIPLSKREVIF----DRGQRVDTLRPGQGVGLAVAREITEQYEGKI 126
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 33.5 bits (75), Expect = 0.58, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944
+ +KIL+VDD + + L+R G V+ G++A + + D +D+ +P++
Sbjct: 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALK-KAETEKPDLIVLDVMLPKL 60
Query: 945 DGYEM 949
DG E+
Sbjct: 61 DGIEV 65
>pdb|2Q8F|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1
pdb|2Q8G|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
Complex With Glucose-Lowering Drug Azd7545
pdb|2Q8H|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
Complex With Dichloroacetate (Dca)
Length = 407
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 636 NLIVSVEDTGQGIPLEAQSRIF------TPFMQVGPSISRTHGGTGIGLSISKYLVGRMK 689
+L V + D G G+PL R+F P +V S + G G GL IS+ +
Sbjct: 282 DLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQ 341
Query: 690 GEIGFVSIPNIGS 702
G++ S+ G+
Sbjct: 342 GDLKLYSLEGYGT 354
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 33.1 bits (74), Expect = 0.85, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
+KILIVDD + + + G VV G++A E Q D + + +PE+DG
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQF-EAEQPDIIILXLMLPEIDG 60
Query: 947 YEM 949
E+
Sbjct: 61 LEV 63
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 885 LGRKILIVDDN---NVNLK--VAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI 939
+G+++LIVDD + LK + AG + G A E +K EL + D MDI
Sbjct: 1 MGKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL-----KPDIVTMDI 55
Query: 940 QMPEMDGYEML 950
MPEM+G + +
Sbjct: 56 TMPEMNGIDAI 66
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYE 948
+L+++D+ V + L G V ERGK+A +LL H F+ + + +P+++G E
Sbjct: 3 VLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH-FNVVLLXLLLPDVNGLE 61
Query: 949 ML 950
+L
Sbjct: 62 IL 63
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K+L+VDD++ ++ L R G V+ E G +A E L D MPEM+G
Sbjct: 7 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 66
Query: 947 YEML 950
+++
Sbjct: 67 LDLV 70
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
K+L+VDD++ ++ L R G V+ E G +A E L D MPEM+G
Sbjct: 7 KLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 66
Query: 947 YEML 950
+++
Sbjct: 67 LDLV 70
>pdb|3CGY|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGY|B Chain B, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGY|C Chain C, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain In Complex With Radicicol
pdb|3CGZ|A Chain A, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
pdb|3CGZ|B Chain B, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
pdb|3CGZ|C Chain C, Crystal Structure Of Salmonella Sensor Kinase Phoq
Catalytic Domain
Length = 157
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695
+L + VED G GIP +S +F G G G+GL++++ + + G+I +
Sbjct: 79 HLHIFVEDDGPGIPHSKRSLVF----DRGQRADTLRPGQGVGLAVAREITEQYAGQI--I 132
Query: 696 SIPNIGSTFTFTAVFGNGSSTSNE 719
+ ++ VFG T E
Sbjct: 133 ASDSLLGGARMEVVFGRQHPTQKE 156
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 170 ERTAFERPLTSGV-AYAVRV--LRSEREEFEKQQGWTIKRMDTFEHNPVHKDE--PSPIE 224
E AF + LT G Y +RV L+ E F++ W ++ + + + +E P P
Sbjct: 17 EFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRISPWPLRPIPWCQEGFYYPEEARPGPHP 76
Query: 225 EEYAPVIFAQDTVSHVIS-----------LDMLSGKEDRENVLRARASGKGVLTA 268
YA + + Q+ + + LD+ + + L AR GKG+L A
Sbjct: 77 FFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARXGGKGLLLA 131
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY 947
+ILIV+D+ + L+ G V G++A L D D+ MPEMDGY
Sbjct: 9 EILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRP-DLIISDVLMPEMDGY 67
Query: 948 EM 949
+
Sbjct: 68 AL 69
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 170 ERTAFERPLTSGV-AYAVRV--LRSEREEFEKQQGWTIKRMDTFEHNPVHKDE--PSPIE 224
E AF + LT G Y +RV L+ E F++ W ++ + + + +E P P
Sbjct: 17 EFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRISPWPLRPIPWCQEGFYYPEEARPGPHP 76
Query: 225 EEYAPVIFAQDTVSHVIS-----------LDMLSGKEDRENVLRARASGKGVLTA 268
YA + + Q+ + + LD+ + + L AR GKG+L A
Sbjct: 77 FFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLA 131
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 170 ERTAFERPLTSGV-AYAVRV--LRSEREEFEKQQGWTIKRMDTFEHNPVHKDE--PSPIE 224
E AF + LT G Y +RV L+ E F++ W ++ + + + +E P P
Sbjct: 17 EFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRISPWPLRPIPWCQEGFYYPEEARPGPHP 76
Query: 225 EEYAPVIFAQDTVSHVIS-----------LDMLSGKEDRENVLRARASGKGVLTA 268
YA + + Q+ + + LD+ + + L AR GKG+L A
Sbjct: 77 FFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLA 131
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex
With Chey6 From R. Sphaeroides
Length = 145
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 889 ILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946
++IVDD + A+ +K V G++A + L D +DI+MP MDG
Sbjct: 16 VMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPVMDG 75
Query: 947 YEML 950
E L
Sbjct: 76 MEFL 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,795,580
Number of Sequences: 62578
Number of extensions: 1118453
Number of successful extensions: 2572
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2518
Number of HSP's gapped (non-prelim): 66
length of query: 993
length of database: 14,973,337
effective HSP length: 108
effective length of query: 885
effective length of database: 8,214,913
effective search space: 7270198005
effective search space used: 7270198005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)