Query 001941
Match_columns 993
No_of_seqs 681 out of 6106
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 12:53:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11107 hybrid sensory histid 100.0 4.7E-54 1E-58 548.4 56.8 468 422-965 278-748 (919)
2 PRK10841 hybrid sensory kinase 100.0 6.5E-52 1.4E-56 523.7 54.3 451 420-967 430-882 (924)
3 PRK15347 two component system 100.0 1.7E-46 3.8E-51 479.0 68.8 384 424-965 385-773 (921)
4 TIGR02956 TMAO_torS TMAO reduc 100.0 2.4E-46 5.2E-51 480.2 45.4 331 423-965 450-784 (968)
5 PRK11091 aerobic respiration c 100.0 2.9E-45 6.3E-50 459.9 44.5 370 428-864 274-645 (779)
6 KOG0519 Sensory transduction h 100.0 7.1E-49 1.5E-53 484.1 9.6 724 225-963 4-745 (786)
7 PRK11466 hybrid sensory histid 100.0 1.1E-44 2.3E-49 462.4 44.6 336 418-967 425-763 (914)
8 PRK10618 phosphotransfer inter 100.0 7.9E-44 1.7E-48 444.6 43.5 303 421-793 434-736 (894)
9 PRK09959 hybrid sensory histid 100.0 5.1E-41 1.1E-45 439.9 44.6 346 417-967 692-1039(1197)
10 PRK13837 two-component VirA-li 100.0 3.4E-36 7.3E-41 379.5 49.8 365 435-864 448-814 (828)
11 COG5002 VicK Signal transducti 100.0 6.3E-39 1.4E-43 341.5 17.1 226 433-712 221-450 (459)
12 PRK09303 adaptive-response sen 100.0 3E-35 6.6E-40 339.2 31.8 244 414-712 128-379 (380)
13 COG2205 KdpD Osmosensitive K+ 100.0 1.8E-35 3.9E-40 345.9 27.9 225 431-713 654-882 (890)
14 PRK11006 phoR phosphate regulo 100.0 4.9E-32 1.1E-36 317.5 28.1 220 436-711 203-424 (430)
15 PRK13557 histidine kinase; Pro 100.0 5.1E-30 1.1E-34 307.2 43.8 366 436-863 162-534 (540)
16 PRK10604 sensor protein RstB; 100.0 6.8E-31 1.5E-35 308.2 35.3 228 423-712 198-425 (433)
17 TIGR02938 nifL_nitrog nitrogen 100.0 1.6E-30 3.4E-35 307.0 29.9 214 436-710 275-494 (494)
18 PRK10815 sensor protein PhoQ; 100.0 9.4E-30 2E-34 302.3 36.5 222 429-711 258-479 (485)
19 PRK10549 signal transduction h 100.0 2.8E-29 6E-34 296.3 35.3 236 421-712 224-460 (466)
20 PRK10490 sensor protein KdpD; 100.0 3.2E-29 6.9E-34 316.3 32.2 222 433-712 660-884 (895)
21 PRK10364 sensor protein ZraS; 100.0 1.8E-28 3.9E-33 289.6 35.6 213 436-712 236-450 (457)
22 PRK10755 sensor protein BasS/P 100.0 2.1E-28 4.5E-33 279.3 34.1 226 423-711 123-351 (356)
23 PRK09835 sensor kinase CusS; P 100.0 4.8E-28 1E-32 286.8 36.5 232 422-710 247-480 (482)
24 TIGR01386 cztS_silS_copS heavy 100.0 3.3E-28 7.2E-33 285.6 33.8 230 422-709 226-457 (457)
25 TIGR03785 marine_sort_HK prote 100.0 4.3E-28 9.2E-33 299.5 35.9 229 425-709 473-703 (703)
26 COG4191 Signal transduction hi 100.0 4.3E-26 9.3E-31 260.9 49.3 212 437-710 384-601 (603)
27 PRK09470 cpxA two-component se 100.0 1.4E-27 3E-32 281.1 36.4 231 423-712 229-459 (461)
28 COG3852 NtrB Signal transducti 100.0 1.1E-28 2.3E-33 260.9 23.9 222 435-712 130-356 (363)
29 COG4251 Bacteriophytochrome (l 100.0 1.6E-28 3.5E-33 279.2 24.9 235 421-714 508-745 (750)
30 PRK09467 envZ osmolarity senso 100.0 2.3E-27 4.9E-32 277.7 34.0 222 421-711 213-434 (435)
31 PRK10337 sensor protein QseC; 100.0 3.8E-27 8.2E-32 277.1 33.7 225 423-708 223-449 (449)
32 TIGR02966 phoR_proteo phosphat 100.0 1.5E-27 3.2E-32 267.0 27.1 218 436-708 113-333 (333)
33 PRK11100 sensory histidine kin 100.0 4.1E-26 8.9E-31 269.0 34.8 218 437-711 256-474 (475)
34 PRK11073 glnL nitrogen regulat 100.0 1.6E-26 3.6E-31 262.4 27.6 217 436-710 129-347 (348)
35 COG0642 BaeS Signal transducti 99.9 5E-25 1.1E-29 243.7 29.8 217 436-712 114-331 (336)
36 PRK11360 sensory histidine kin 99.9 8.4E-25 1.8E-29 264.5 29.6 214 436-712 389-603 (607)
37 PF03924 CHASE: CHASE domain; 99.9 1.4E-25 3.1E-30 234.5 15.6 186 157-350 2-193 (193)
38 TIGR02916 PEP_his_kin putative 99.9 9.1E-24 2E-28 261.4 28.5 203 436-709 474-679 (679)
39 PRK13560 hypothetical protein; 99.9 5.4E-24 1.2E-28 267.6 24.0 209 425-712 593-805 (807)
40 PRK11086 sensory histidine kin 99.9 5.3E-22 1.1E-26 238.6 23.0 194 438-712 340-537 (542)
41 PRK11644 sensory histidine kin 99.9 7.2E-21 1.6E-25 226.7 30.0 195 434-710 299-494 (495)
42 COG5000 NtrY Signal transducti 99.9 1.1E-21 2.3E-26 223.6 21.5 212 435-710 484-708 (712)
43 PRK15053 dpiB sensor histidine 99.9 5.4E-21 1.2E-25 230.8 25.6 197 440-712 341-541 (545)
44 COG3614 Predicted periplasmic 99.9 1.4E-20 3.1E-25 200.7 24.5 229 84-320 10-248 (348)
45 COG4192 Signal transduction hi 99.8 1.4E-19 3E-24 199.3 24.7 212 438-710 452-666 (673)
46 PF02518 HATPase_c: Histidine 99.8 5.5E-19 1.2E-23 167.7 14.0 109 548-710 1-110 (111)
47 PRK13559 hypothetical protein; 99.8 3E-18 6.6E-23 195.9 21.2 186 436-711 169-360 (361)
48 PRK10935 nitrate/nitrite senso 99.7 1.9E-16 4.1E-21 192.0 25.3 191 442-712 365-561 (565)
49 COG3290 CitA Signal transducti 99.7 1.7E-16 3.6E-21 181.8 22.4 192 441-712 337-533 (537)
50 PRK10600 nitrate/nitrite senso 99.7 3.3E-15 7.2E-20 181.7 26.6 183 448-711 373-557 (569)
51 KOG0519 Sensory transduction h 99.6 2.7E-15 5.9E-20 186.5 14.9 400 427-862 376-784 (786)
52 PRK10547 chemotaxis protein Ch 99.6 8E-14 1.7E-18 169.1 24.6 144 512-712 345-525 (670)
53 PRK04184 DNA topoisomerase VI 99.5 2.2E-13 4.8E-18 160.0 17.2 116 547-712 31-154 (535)
54 PRK09581 pleD response regulat 99.4 6.5E-12 1.4E-16 147.6 20.7 223 740-970 4-240 (457)
55 smart00387 HATPase_c Histidine 99.4 4.9E-12 1.1E-16 117.2 14.3 109 548-710 1-110 (111)
56 PRK14868 DNA topoisomerase VI 99.2 9.1E-11 2E-15 140.4 15.4 129 528-711 21-160 (795)
57 TIGR01052 top6b DNA topoisomer 99.2 5.6E-11 1.2E-15 138.5 13.0 110 546-708 22-138 (488)
58 PF00512 HisKA: His Kinase A ( 99.2 4.4E-11 9.6E-16 103.2 8.5 66 436-501 1-68 (68)
59 PRK14867 DNA topoisomerase VI 99.2 1.2E-10 2.7E-15 139.4 13.6 114 547-712 28-151 (659)
60 cd00075 HATPase_c Histidine ki 99.2 2.3E-10 5E-15 104.2 12.3 71 636-708 33-103 (103)
61 COG0745 OmpR Response regulato 99.2 9.4E-11 2E-15 125.9 10.8 76 888-965 2-79 (229)
62 TIGR01925 spIIAB anti-sigma F 99.1 4E-10 8.6E-15 111.2 12.3 97 549-708 36-136 (137)
63 COG3452 Predicted periplasmic 99.1 5.1E-09 1.1E-13 110.1 19.2 168 101-321 33-200 (297)
64 COG3706 PleD Response regulato 99.1 1E-09 2.3E-14 125.9 15.2 189 765-964 15-212 (435)
65 COG0643 CheA Chemotaxis protei 99.1 1.2E-08 2.6E-13 124.9 24.2 77 634-711 474-574 (716)
66 COG0784 CheY FOG: CheY-like re 99.1 8.9E-10 1.9E-14 106.5 10.8 77 886-963 5-84 (130)
67 PRK03660 anti-sigma F factor; 99.0 2.1E-09 4.6E-14 107.2 13.2 101 549-712 36-140 (146)
68 COG3851 UhpB Signal transducti 99.0 1.7E-07 3.8E-12 102.3 26.0 189 436-709 302-493 (497)
69 COG4585 Signal transduction hi 99.0 1.8E-07 4E-12 107.8 28.1 90 549-710 276-365 (365)
70 COG3920 Signal transduction hi 98.9 4.2E-07 9.2E-12 97.2 25.6 194 436-712 18-217 (221)
71 COG4753 Response regulator con 98.9 3E-09 6.5E-14 122.8 8.7 73 888-961 3-78 (475)
72 PF00072 Response_reg: Respons 98.8 1.6E-08 3.4E-13 95.1 10.0 80 889-969 1-82 (112)
73 COG2972 Predicted signal trans 98.8 1.3E-06 2.7E-11 103.9 27.8 66 636-712 386-454 (456)
74 COG2204 AtoC Response regulato 98.8 1.4E-08 3.1E-13 117.6 10.6 83 887-970 5-88 (464)
75 COG3850 NarQ Signal transducti 98.8 1.5E-06 3.2E-11 100.2 25.4 184 443-710 375-568 (574)
76 COG3437 Response regulator con 98.8 1.6E-08 3.5E-13 111.6 9.1 79 886-965 14-96 (360)
77 PRK04069 serine-protein kinase 98.7 1.5E-07 3.2E-12 95.8 13.8 103 549-712 39-145 (161)
78 COG2201 CheB Chemotaxis respon 98.6 7.9E-08 1.7E-12 107.5 9.3 77 887-964 2-80 (350)
79 PLN03029 type-a response regul 98.6 1.3E-07 2.8E-12 101.4 10.4 80 886-965 8-109 (222)
80 COG2197 CitB Response regulato 98.6 2E-07 4.4E-12 99.1 11.1 80 888-968 2-84 (211)
81 PRK11091 aerobic respiration c 98.6 1.2E-07 2.6E-12 120.1 11.0 79 886-965 525-607 (779)
82 COG3275 LytS Putative regulato 98.6 1.1E-05 2.4E-10 91.7 23.3 129 508-712 415-553 (557)
83 PRK11173 two-component respons 98.5 4.9E-07 1.1E-11 97.0 11.1 78 887-965 4-81 (237)
84 PRK10529 DNA-binding transcrip 98.5 5E-07 1.1E-11 95.8 11.0 77 888-965 3-79 (225)
85 PRK13856 two-component respons 98.5 6.1E-07 1.3E-11 96.7 10.8 78 887-965 2-79 (241)
86 PRK12555 chemotaxis-specific m 98.5 5.6E-07 1.2E-11 102.7 10.3 77 888-965 2-80 (337)
87 PRK10701 DNA-binding transcrip 98.5 7.6E-07 1.6E-11 95.7 10.7 77 888-965 3-79 (240)
88 PRK15029 arginine decarboxylas 98.5 4.3E-07 9.4E-12 111.9 9.8 79 888-966 2-93 (755)
89 COG4564 Signal transduction hi 98.5 4.7E-05 1E-09 82.8 23.8 183 448-711 262-448 (459)
90 KOG0787 Dehydrogenase kinase [ 98.5 1.7E-05 3.7E-10 87.9 20.8 148 509-710 215-380 (414)
91 TIGR01924 rsbW_low_gc serine-p 98.4 1.9E-06 4.2E-11 87.5 12.6 101 550-711 40-144 (159)
92 PRK10046 dpiA two-component re 98.4 9.2E-07 2E-11 94.8 10.9 80 887-967 5-87 (225)
93 PRK10766 DNA-binding transcrip 98.4 1.1E-06 2.3E-11 93.0 11.2 78 887-965 3-80 (221)
94 PRK10955 DNA-binding transcrip 98.4 1.2E-06 2.7E-11 93.0 10.8 76 888-965 3-78 (232)
95 COG3947 Response regulator con 98.4 4.6E-07 1E-11 96.9 6.9 76 888-964 2-78 (361)
96 PRK10816 DNA-binding transcrip 98.4 1.4E-06 3E-11 92.3 10.6 77 888-965 2-79 (223)
97 PRK09468 ompR osmolarity respo 98.4 1.8E-06 3.9E-11 92.6 10.9 79 886-965 5-84 (239)
98 smart00388 HisKA His Kinase A 98.4 1.2E-06 2.6E-11 73.4 7.3 64 437-500 2-65 (66)
99 COG4565 CitB Response regulato 98.3 1.1E-06 2.5E-11 90.6 8.2 76 888-964 2-80 (224)
100 PRK11517 transcriptional regul 98.3 2.2E-06 4.7E-11 90.5 10.8 77 888-965 2-78 (223)
101 TIGR02154 PhoB phosphate regul 98.3 2.2E-06 4.8E-11 90.3 10.7 78 887-965 3-83 (226)
102 PRK09836 DNA-binding transcrip 98.3 2.3E-06 4.9E-11 90.9 10.7 78 888-966 2-80 (227)
103 PRK14084 two-component respons 98.3 2.2E-06 4.7E-11 92.8 10.6 76 888-964 2-79 (246)
104 PRK00742 chemotaxis-specific m 98.3 2.1E-06 4.5E-11 98.7 10.5 78 887-965 4-83 (354)
105 PRK10161 transcriptional regul 98.3 2.9E-06 6.3E-11 90.3 10.9 78 887-965 3-83 (229)
106 PRK10643 DNA-binding transcrip 98.3 2.8E-06 6.1E-11 89.3 10.6 77 888-965 2-79 (222)
107 PF14501 HATPase_c_5: GHKL dom 98.3 1.4E-05 3.1E-10 74.6 13.0 94 549-710 2-99 (100)
108 TIGR02875 spore_0_A sporulatio 98.3 3.8E-06 8.1E-11 92.1 10.4 78 887-965 3-85 (262)
109 PRK10336 DNA-binding transcrip 98.3 7.8E-06 1.7E-10 85.9 12.3 80 888-968 2-82 (219)
110 TIGR03787 marine_sort_RR prote 98.2 4.8E-06 1E-10 88.4 10.5 77 887-964 1-80 (227)
111 PRK10430 DNA-binding transcrip 98.2 5.2E-06 1.1E-10 89.8 10.2 79 888-966 3-85 (239)
112 PRK11083 DNA-binding response 98.2 7.7E-06 1.7E-10 86.4 11.0 78 887-965 4-82 (228)
113 PRK11697 putative two-componen 98.2 5.6E-06 1.2E-10 89.0 10.0 77 887-964 2-80 (238)
114 CHL00148 orf27 Ycf27; Reviewed 98.2 7.7E-06 1.7E-10 87.3 10.9 78 887-965 7-84 (240)
115 PRK10710 DNA-binding transcrip 98.2 9.7E-06 2.1E-10 86.6 11.2 78 887-965 11-88 (240)
116 PRK10923 glnG nitrogen regulat 98.2 8.3E-06 1.8E-10 97.3 11.4 81 887-968 4-85 (469)
117 PRK15115 response regulator Gl 98.2 8.1E-06 1.8E-10 96.6 11.1 77 887-964 6-83 (444)
118 COG0745 OmpR Response regulato 98.1 1.3E-05 2.9E-10 86.2 11.4 118 739-864 1-118 (229)
119 TIGR01387 cztR_silR_copR heavy 98.1 1E-05 2.2E-10 84.8 10.2 76 889-965 1-77 (218)
120 PRK11361 acetoacetate metaboli 98.1 1E-05 2.2E-10 96.1 11.3 80 886-966 4-84 (457)
121 PRK10365 transcriptional regul 98.1 1.1E-05 2.4E-10 95.4 10.9 78 887-965 6-84 (441)
122 PRK09958 DNA-binding transcrip 98.1 1.5E-05 3.2E-10 83.0 10.4 77 888-965 2-80 (204)
123 PRK09390 fixJ response regulat 98.1 2.2E-05 4.8E-10 80.6 11.4 79 886-965 3-82 (202)
124 PF00072 Response_reg: Respons 98.1 2.7E-05 5.9E-10 73.0 10.4 110 741-858 1-111 (112)
125 PRK13558 bacterio-opsin activa 98.1 9.9E-06 2.1E-10 100.9 9.4 80 887-967 8-88 (665)
126 TIGR01818 ntrC nitrogen regula 98.1 1.3E-05 2.8E-10 95.4 10.0 76 889-965 1-77 (463)
127 PRK15411 rcsA colanic acid cap 98.0 2E-05 4.3E-10 83.7 10.2 79 888-967 2-86 (207)
128 COG4566 TtrR Response regulato 98.0 2.1E-05 4.6E-10 79.9 9.5 83 887-970 5-88 (202)
129 PRK09483 response regulator; P 98.0 2.5E-05 5.4E-10 82.1 10.4 78 888-966 3-83 (217)
130 PRK10840 transcriptional regul 98.0 4.1E-05 8.8E-10 81.3 11.9 85 887-972 4-94 (216)
131 PRK13435 response regulator; P 98.0 4E-05 8.7E-10 75.7 10.4 79 886-965 5-85 (145)
132 PRK09191 two-component respons 98.0 3.3E-05 7.2E-10 84.2 10.6 79 887-966 138-218 (261)
133 PRK09935 transcriptional regul 98.0 4.2E-05 9.2E-10 79.6 10.8 79 887-966 4-85 (210)
134 PRK10100 DNA-binding transcrip 98.0 2.9E-05 6.2E-10 83.0 9.3 80 886-969 10-92 (216)
135 PRK10360 DNA-binding transcrip 97.9 4E-05 8.7E-10 79.2 10.1 77 888-967 3-81 (196)
136 TIGR00585 mutl DNA mismatch re 97.9 5.9E-05 1.3E-09 85.2 12.1 66 637-707 52-125 (312)
137 PRK15479 transcriptional regul 97.9 5.7E-05 1.2E-09 79.3 10.5 76 888-964 2-78 (221)
138 cd00082 HisKA Histidine Kinase 97.9 3.6E-05 7.8E-10 63.7 7.2 62 436-497 3-65 (65)
139 TIGR02915 PEP_resp_reg putativ 97.9 4E-05 8.6E-10 90.8 10.0 77 889-968 1-83 (445)
140 COG2204 AtoC Response regulato 97.9 6.7E-05 1.4E-09 87.6 11.4 164 739-910 5-188 (464)
141 COG4567 Response regulator con 97.8 7.5E-05 1.6E-09 73.0 9.2 74 887-961 10-83 (182)
142 PRK09581 pleD response regulat 97.8 8E-05 1.7E-09 87.6 10.9 80 888-968 4-86 (457)
143 PRK10610 chemotaxis regulatory 97.7 0.00033 7.1E-09 65.3 10.8 77 887-964 6-86 (129)
144 PRK15347 two component system 97.7 0.0003 6.6E-09 90.8 13.9 120 737-863 689-811 (921)
145 PRK10403 transcriptional regul 97.6 0.00028 6E-09 73.4 10.2 78 887-965 7-87 (215)
146 PRK13557 histidine kinase; Pro 97.6 0.00028 6E-09 85.0 10.8 80 885-964 414-495 (540)
147 PF13581 HATPase_c_2: Histidin 97.6 0.00063 1.4E-08 65.8 11.3 93 549-707 28-124 (125)
148 PRK15369 two component system 97.6 0.00039 8.5E-09 71.7 10.4 78 887-965 4-84 (211)
149 COG0784 CheY FOG: CheY-like re 97.6 0.00086 1.9E-08 64.4 12.0 119 737-862 4-124 (130)
150 PRK10651 transcriptional regul 97.5 0.00038 8.2E-09 72.5 10.1 78 887-965 7-87 (216)
151 COG1389 DNA topoisomerase VI, 97.5 0.00027 5.9E-09 80.3 9.2 117 549-713 33-153 (538)
152 PLN03029 type-a response regul 97.5 0.00068 1.5E-08 72.8 11.1 119 737-860 7-144 (222)
153 PRK10841 hybrid sensory kinase 97.5 0.00044 9.5E-09 89.2 11.4 119 736-862 799-917 (924)
154 cd00156 REC Signal receiver do 97.4 0.00074 1.6E-08 59.9 8.9 75 890-965 1-76 (113)
155 PRK13837 two-component VirA-li 97.4 0.00058 1.3E-08 87.4 11.2 83 885-969 696-780 (828)
156 TIGR02956 TMAO_torS TMAO reduc 97.4 0.00058 1.3E-08 88.8 11.3 120 737-863 701-822 (968)
157 COG3279 LytT Response regulato 97.4 0.00042 9.1E-09 75.5 8.3 76 888-964 3-80 (244)
158 PRK11107 hybrid sensory histid 97.3 0.0011 2.4E-08 85.6 12.1 122 736-864 665-787 (919)
159 COG3437 Response regulator con 97.3 0.00086 1.9E-08 74.8 8.9 116 737-859 13-130 (360)
160 PRK11466 hybrid sensory histid 97.3 0.0012 2.5E-08 85.5 11.4 120 737-863 680-799 (914)
161 PRK11475 DNA-binding transcrip 97.2 0.00088 1.9E-08 71.1 8.3 67 899-966 3-76 (207)
162 COG4566 TtrR Response regulato 97.1 0.0023 4.9E-08 65.5 9.1 119 739-865 5-123 (202)
163 PRK12555 chemotaxis-specific m 97.0 0.033 7.2E-07 63.6 18.5 197 739-964 1-212 (337)
164 COG3706 PleD Response regulato 97.0 0.0046 9.9E-08 72.0 11.3 119 738-863 132-251 (435)
165 TIGR02154 PhoB phosphate regul 96.9 0.0074 1.6E-07 63.4 11.9 119 738-863 2-121 (226)
166 PRK00742 chemotaxis-specific m 96.9 0.083 1.8E-06 60.8 20.8 207 738-964 3-223 (354)
167 COG3707 AmiR Response regulato 96.9 0.0025 5.3E-08 65.6 7.1 78 887-965 6-84 (194)
168 PRK10161 transcriptional regul 96.9 0.0091 2E-07 63.3 11.9 118 739-863 3-121 (229)
169 COG4753 Response regulator con 96.8 0.0036 7.7E-08 73.3 9.2 118 739-864 2-122 (475)
170 PRK10955 DNA-binding transcrip 96.8 0.0087 1.9E-07 63.4 11.6 114 740-863 3-116 (232)
171 COG2172 RsbW Anti-sigma regula 96.8 0.011 2.5E-07 59.1 11.6 90 549-701 37-131 (146)
172 TIGR01818 ntrC nitrogen regula 96.8 0.0041 8.8E-08 74.1 10.0 155 741-910 1-155 (463)
173 COG4565 CitB Response regulato 96.8 0.0077 1.7E-07 62.9 10.0 115 740-862 2-118 (224)
174 PRK09468 ompR osmolarity respo 96.8 0.012 2.6E-07 62.9 12.1 119 738-864 5-123 (239)
175 PRK11173 two-component respons 96.7 0.012 2.6E-07 63.0 11.7 116 739-863 4-119 (237)
176 smart00448 REC cheY-homologous 96.7 0.0077 1.7E-07 45.8 7.4 54 888-942 2-55 (55)
177 PRK00095 mutL DNA mismatch rep 96.7 0.0087 1.9E-07 73.8 11.2 58 637-699 52-115 (617)
178 TIGR02875 spore_0_A sporulatio 96.6 0.012 2.5E-07 64.5 11.0 120 739-864 3-124 (262)
179 PRK10643 DNA-binding transcrip 96.6 0.016 3.5E-07 60.6 11.8 117 739-863 1-117 (222)
180 PRK10430 DNA-binding transcrip 96.6 0.014 3.1E-07 63.0 11.3 117 739-861 2-120 (239)
181 PRK09836 DNA-binding transcrip 96.6 0.012 2.6E-07 62.4 10.4 117 739-863 1-117 (227)
182 PRK10816 DNA-binding transcrip 96.6 0.012 2.6E-07 62.2 10.2 117 739-863 1-117 (223)
183 PRK10766 DNA-binding transcrip 96.6 0.02 4.3E-07 60.3 11.7 116 739-863 3-118 (221)
184 PRK10336 DNA-binding transcrip 96.5 0.015 3.3E-07 60.8 10.7 117 739-863 1-117 (219)
185 PRK10529 DNA-binding transcrip 96.5 0.016 3.5E-07 61.2 10.8 116 739-863 2-117 (225)
186 PRK10046 dpiA two-component re 96.5 0.021 4.6E-07 61.1 11.8 117 738-862 4-122 (225)
187 PRK10701 DNA-binding transcrip 96.5 0.018 4E-07 61.6 10.9 116 740-864 3-118 (240)
188 PRK13856 two-component respons 96.4 0.02 4.4E-07 61.5 11.1 117 740-864 3-119 (241)
189 PRK11517 transcriptional regul 96.4 0.023 5E-07 59.7 11.0 116 739-863 1-116 (223)
190 PRK11083 DNA-binding response 96.4 0.036 7.7E-07 58.3 12.3 118 739-864 4-121 (228)
191 TIGR03787 marine_sort_RR prote 96.4 0.032 7E-07 58.9 12.0 118 740-863 2-119 (227)
192 PRK10840 transcriptional regul 96.3 0.031 6.8E-07 59.2 11.6 121 738-863 3-125 (216)
193 CHL00148 orf27 Ycf27; Reviewed 96.3 0.037 7.9E-07 58.9 12.1 118 738-864 6-123 (240)
194 PRK10693 response regulator of 96.3 0.006 1.3E-07 68.7 6.3 51 915-966 2-53 (303)
195 PRK15115 response regulator Gl 96.2 0.021 4.6E-07 67.7 10.5 118 738-863 5-122 (444)
196 PRK09959 hybrid sensory histid 96.2 0.017 3.7E-07 77.1 10.8 118 738-863 958-1075(1197)
197 PRK10618 phosphotransfer inter 96.2 0.0054 1.2E-07 78.6 5.7 69 884-959 687-767 (894)
198 PRK10365 transcriptional regul 96.2 0.018 3.9E-07 68.1 9.5 118 738-863 5-122 (441)
199 PRK10923 glnG nitrogen regulat 96.2 0.022 4.8E-07 68.0 10.4 117 739-863 4-120 (469)
200 PRK09958 DNA-binding transcrip 96.1 0.03 6.6E-07 58.0 10.0 117 739-863 1-118 (204)
201 COG4567 Response regulator con 96.0 0.04 8.7E-07 54.5 9.2 113 740-861 11-124 (182)
202 PRK14084 two-component respons 96.0 0.036 7.8E-07 59.8 10.2 115 739-863 1-117 (246)
203 COG3947 Response regulator con 96.0 0.033 7.2E-07 60.6 9.5 114 739-862 1-114 (361)
204 PRK13435 response regulator; P 95.8 0.12 2.6E-06 50.8 12.2 114 738-862 5-119 (145)
205 COG2197 CitB Response regulato 95.8 0.059 1.3E-06 57.5 10.6 117 740-864 2-120 (211)
206 PRK10610 chemotaxis regulatory 95.7 0.15 3.2E-06 47.1 11.7 119 738-862 5-124 (129)
207 PRK09483 response regulator; P 95.7 0.064 1.4E-06 56.1 10.2 118 739-864 2-121 (217)
208 PRK11361 acetoacetate metaboli 95.6 0.043 9.4E-07 65.2 9.8 118 738-863 4-121 (457)
209 TIGR01387 cztR_silR_copR heavy 95.6 0.052 1.1E-06 56.6 9.3 115 741-863 1-115 (218)
210 PRK09191 two-component respons 95.5 0.12 2.6E-06 56.2 12.1 115 739-863 138-253 (261)
211 PRK10710 DNA-binding transcrip 95.4 0.13 2.8E-06 54.7 11.5 116 739-863 11-126 (240)
212 PRK15479 transcriptional regul 95.4 0.093 2E-06 54.8 10.3 117 739-863 1-117 (221)
213 PRK11697 putative two-componen 95.4 0.074 1.6E-06 57.0 9.5 114 739-863 2-117 (238)
214 TIGR02915 PEP_resp_reg putativ 95.3 0.079 1.7E-06 62.9 10.5 116 741-863 1-118 (445)
215 PF13589 HATPase_c_3: Histidin 95.3 0.011 2.4E-07 58.5 2.7 68 638-710 35-107 (137)
216 PRK10360 DNA-binding transcrip 95.0 0.12 2.7E-06 53.0 9.4 114 739-863 2-117 (196)
217 PRK09390 fixJ response regulat 94.9 0.12 2.6E-06 52.6 9.2 117 739-863 4-120 (202)
218 PRK09935 transcriptional regul 94.6 0.22 4.8E-06 51.5 10.4 117 739-863 4-122 (210)
219 PRK05559 DNA topoisomerase IV 94.0 0.1 2.3E-06 64.4 7.3 90 549-698 34-138 (631)
220 cd00156 REC Signal receiver do 93.7 0.45 9.7E-06 41.6 9.0 111 742-860 1-111 (113)
221 PRK14083 HSP90 family protein; 93.3 0.06 1.3E-06 65.9 3.4 57 638-698 64-127 (601)
222 PRK10100 DNA-binding transcrip 93.0 0.58 1.3E-05 50.1 10.0 116 738-863 10-126 (216)
223 PRK10651 transcriptional regul 92.9 0.68 1.5E-05 47.9 10.3 118 738-863 6-125 (216)
224 TIGR01055 parE_Gneg DNA topois 92.7 0.15 3.2E-06 63.0 5.7 50 638-687 63-124 (625)
225 PRK15369 two component system 92.6 0.75 1.6E-05 47.0 10.0 118 738-863 3-122 (211)
226 PRK15411 rcsA colanic acid cap 92.5 0.95 2.1E-05 48.1 10.8 117 740-864 2-123 (207)
227 PRK13558 bacterio-opsin activa 92.4 0.33 7.3E-06 60.6 8.4 116 739-862 8-125 (665)
228 COG3707 AmiR Response regulato 92.4 0.39 8.6E-06 49.7 7.3 116 737-862 4-121 (194)
229 PRK10403 transcriptional regul 92.4 0.87 1.9E-05 47.0 10.2 117 739-863 7-125 (215)
230 PRK15029 arginine decarboxylas 92.3 0.71 1.5E-05 58.0 10.9 85 739-825 1-94 (755)
231 PRK05644 gyrB DNA gyrase subun 92.1 0.26 5.7E-06 61.0 6.8 29 549-577 34-65 (638)
232 TIGR01059 gyrB DNA gyrase, B s 92.0 0.22 4.8E-06 62.0 6.0 29 549-577 27-58 (654)
233 PRK05218 heat shock protein 90 90.8 0.77 1.7E-05 56.8 8.9 58 638-699 74-143 (613)
234 PTZ00272 heat shock protein 83 90.4 0.23 4.9E-06 61.8 3.8 20 638-657 73-92 (701)
235 COG2201 CheB Chemotaxis respon 89.6 1.3 2.7E-05 50.6 8.6 60 739-800 2-63 (350)
236 PTZ00130 heat shock protein 90 89.0 0.55 1.2E-05 58.8 5.7 47 638-684 136-193 (814)
237 PF06490 FleQ: Flagellar regul 87.0 3.4 7.4E-05 39.2 8.6 107 740-861 1-107 (109)
238 smart00448 REC cheY-homologous 86.9 3.7 8.1E-05 30.3 7.4 51 740-792 2-52 (55)
239 PF06490 FleQ: Flagellar regul 86.5 2.4 5.3E-05 40.3 7.3 73 888-964 1-75 (109)
240 smart00433 TOP2c Topoisomerase 86.0 0.81 1.8E-05 56.4 4.7 48 638-685 34-93 (594)
241 COG5381 Uncharacterized protei 85.5 2.8 6E-05 41.3 7.0 28 553-580 64-91 (184)
242 PRK11475 DNA-binding transcrip 84.6 4.4 9.4E-05 43.1 8.9 109 752-864 4-115 (207)
243 COG0323 MutL DNA mismatch repa 83.9 1.3 2.8E-05 55.0 5.1 27 638-664 54-80 (638)
244 COG0512 PabA Anthranilate/para 77.1 7.4 0.00016 40.6 7.1 76 887-964 2-80 (191)
245 PRK14939 gyrB DNA gyrase subun 75.6 2.2 4.7E-05 53.7 3.3 35 543-577 25-65 (756)
246 TIGR01058 parE_Gpos DNA topois 73.2 2.9 6.2E-05 51.9 3.5 50 638-687 67-128 (637)
247 PRK15399 lysine decarboxylase 72.4 13 0.00028 46.6 8.9 74 888-964 2-82 (713)
248 COG0326 HtpG Molecular chapero 65.2 7.9 0.00017 47.3 4.8 48 637-684 74-132 (623)
249 PRK15400 lysine decarboxylase 65.2 21 0.00046 44.8 8.7 74 888-964 2-82 (714)
250 PF10087 DUF2325: Uncharacteri 65.2 32 0.0007 31.7 8.0 75 888-964 1-81 (97)
251 TIGR03321 alt_F1F0_F0_B altern 65.2 2.1E+02 0.0046 31.2 16.6 43 388-430 8-55 (246)
252 COG3279 LytT Response regulato 60.3 35 0.00075 37.3 8.4 112 739-860 2-115 (244)
253 cd02067 B12-binding B12 bindin 59.8 45 0.00098 31.7 8.2 71 893-964 10-87 (119)
254 PHA02569 39 DNA topoisomerase 59.5 4.7 0.0001 49.8 1.6 51 638-688 80-144 (602)
255 PLN03237 DNA topoisomerase 2; 59.4 13 0.00029 49.6 5.7 54 638-691 112-177 (1465)
256 PF03709 OKR_DC_1_N: Orn/Lys/A 55.5 28 0.00062 33.3 6.0 64 900-964 7-73 (115)
257 PRK02261 methylaspartate mutas 54.2 83 0.0018 31.2 9.2 70 886-956 3-81 (137)
258 PF02310 B12-binding: B12 bind 53.2 31 0.00068 32.6 5.9 68 896-964 14-87 (121)
259 TIGR00566 trpG_papA glutamine 50.5 42 0.00091 35.0 6.8 74 889-964 2-78 (188)
260 PLN02335 anthranilate synthase 50.1 38 0.00083 36.4 6.6 77 886-964 18-97 (222)
261 cd05212 NAD_bind_m-THF_DH_Cycl 49.9 51 0.0011 32.8 6.9 41 884-924 26-70 (140)
262 PRK05637 anthranilate synthase 48.5 42 0.00091 35.7 6.5 75 887-964 2-79 (208)
263 KOG1977 DNA mismatch repair pr 48.4 33 0.00072 42.1 6.1 44 636-679 49-98 (1142)
264 PRK10693 response regulator of 43.8 49 0.0011 37.2 6.5 88 767-862 2-90 (303)
265 PRK14471 F0F1 ATP synthase sub 43.0 3.7E+02 0.0081 27.2 13.1 46 388-433 11-61 (164)
266 PF07568 HisKA_2: Histidine ki 42.6 1.6E+02 0.0034 26.0 8.2 72 444-524 2-73 (76)
267 PRK13566 anthranilate synthase 41.8 90 0.0019 39.7 8.9 77 884-964 524-604 (720)
268 KOG1979 DNA mismatch repair pr 41.4 32 0.00069 41.5 4.5 26 638-663 58-83 (694)
269 PRK08007 para-aminobenzoate sy 40.9 47 0.001 34.6 5.3 74 889-964 2-78 (187)
270 PLN03128 DNA topoisomerase 2; 40.9 37 0.0008 45.0 5.4 50 638-687 87-148 (1135)
271 COG4122 Predicted O-methyltran 40.0 91 0.002 33.6 7.4 55 888-943 86-144 (219)
272 PRK07649 para-aminobenzoate/an 39.5 40 0.00086 35.5 4.6 72 889-964 2-78 (195)
273 cd02070 corrinoid_protein_B12- 39.4 1.2E+02 0.0027 31.8 8.4 77 887-964 83-171 (201)
274 PRK14188 bifunctional 5,10-met 39.1 6.2E+02 0.013 28.6 15.1 146 738-917 34-189 (296)
275 PF03602 Cons_hypoth95: Conser 38.4 42 0.00091 35.0 4.5 78 887-964 66-151 (183)
276 CHL00101 trpG anthranilate syn 38.2 52 0.0011 34.3 5.2 48 889-937 2-49 (190)
277 cd02065 B12-binding_like B12 b 38.2 1.2E+02 0.0026 28.6 7.4 71 893-964 10-86 (125)
278 PTZ00108 DNA topoisomerase 2-l 38.1 27 0.00058 47.0 3.6 51 638-688 95-157 (1388)
279 PF03808 Glyco_tran_WecB: Glyc 36.7 1.1E+02 0.0025 31.3 7.4 76 886-964 48-132 (172)
280 PRK06895 putative anthranilate 36.1 1.2E+02 0.0025 31.6 7.5 74 887-964 2-78 (190)
281 PRK14474 F0F1 ATP synthase sub 35.4 6.3E+02 0.014 27.7 13.2 25 387-411 7-31 (250)
282 PRK06231 F0F1 ATP synthase sub 35.1 5.8E+02 0.012 27.1 14.4 48 386-433 49-101 (205)
283 PF06295 DUF1043: Protein of u 34.4 1.7E+02 0.0037 28.7 7.7 59 89-149 2-60 (128)
284 PF11044 TMEMspv1-c74-12: Plec 33.9 2.4E+02 0.0051 22.4 6.6 30 385-414 4-33 (49)
285 PRK14178 bifunctional 5,10-met 33.9 7.2E+02 0.016 27.9 14.8 57 884-942 150-206 (279)
286 PF14689 SPOB_a: Sensor_kinase 33.7 1E+02 0.0022 26.2 5.2 42 441-486 16-57 (62)
287 PF01596 Methyltransf_3: O-met 33.2 1.1E+02 0.0024 32.5 6.7 82 886-972 70-158 (205)
288 PRK00811 spermidine synthase; 32.7 1.7E+02 0.0037 32.6 8.5 76 887-964 101-189 (283)
289 TIGR03815 CpaE_hom_Actino heli 32.7 2.1E+02 0.0046 32.3 9.5 46 817-862 41-86 (322)
290 PRK10481 hypothetical protein; 32.0 2.2E+02 0.0047 30.8 8.7 58 902-964 146-212 (224)
291 TIGR01860 VNFD nitrogenase van 31.6 2.1E+02 0.0046 34.3 9.5 79 882-964 323-404 (461)
292 PRK14183 bifunctional 5,10-met 31.3 7.9E+02 0.017 27.6 14.3 176 738-949 33-218 (281)
293 PRK13428 F0F1 ATP synthase sub 31.3 5.4E+02 0.012 30.8 12.8 62 389-450 5-71 (445)
294 COG0187 GyrB Type IIA topoisom 31.3 12 0.00026 45.5 -1.0 49 639-687 70-130 (635)
295 COG0742 N6-adenine-specific me 31.2 1.5E+02 0.0033 31.1 7.1 56 887-942 67-125 (187)
296 PTZ00109 DNA gyrase subunit b; 30.8 9.8 0.00021 48.4 -1.9 17 638-654 162-178 (903)
297 cd02071 MM_CoA_mut_B12_BD meth 30.8 2.2E+02 0.0047 27.4 7.8 71 893-964 10-87 (122)
298 TIGR01861 ANFD nitrogenase iro 30.6 3.4E+02 0.0073 33.2 11.0 79 881-964 323-405 (513)
299 CHL00076 chlB photochlorophyll 29.8 8.9E+02 0.019 29.6 14.5 72 882-964 301-381 (513)
300 PRK06774 para-aminobenzoate sy 29.6 75 0.0016 33.1 4.7 82 889-980 2-86 (191)
301 PRK13170 hisH imidazole glycer 29.2 1.7E+02 0.0036 30.8 7.2 65 888-964 2-76 (196)
302 COG4999 Uncharacterized domain 29.2 2E+02 0.0043 27.9 6.8 114 733-858 6-121 (140)
303 PRK05670 anthranilate synthase 29.1 1E+02 0.0022 32.1 5.5 72 889-964 2-78 (189)
304 PRK14175 bifunctional 5,10-met 28.7 8.8E+02 0.019 27.3 17.0 170 738-943 34-213 (286)
305 PF07279 DUF1442: Protein of u 28.7 4.1E+02 0.0088 28.6 9.8 85 886-976 70-164 (218)
306 cd02068 radical_SAM_B12_BD B12 28.1 1.5E+02 0.0032 28.5 6.2 65 899-963 5-72 (127)
307 PRK13453 F0F1 ATP synthase sub 27.7 6.8E+02 0.015 25.7 14.3 42 391-432 24-70 (173)
308 PLN02589 caffeoyl-CoA O-methyl 26.9 3.9E+02 0.0085 29.3 9.8 82 887-973 105-194 (247)
309 PRK04338 N(2),N(2)-dimethylgua 26.7 2.7E+02 0.0059 32.6 9.1 86 887-978 82-170 (382)
310 PRK14472 F0F1 ATP synthase sub 26.4 7.2E+02 0.016 25.5 14.3 19 412-430 50-68 (175)
311 TIGR00095 RNA methyltransferas 26.3 5.7E+02 0.012 26.6 10.6 78 887-964 73-157 (189)
312 PRK02910 light-independent pro 26.3 4.7E+02 0.01 32.0 11.3 75 882-964 289-369 (519)
313 cd01424 MGS_CPS_II Methylglyox 26.2 3.6E+02 0.0079 25.1 8.4 42 920-963 57-100 (110)
314 PRK14473 F0F1 ATP synthase sub 25.8 7E+02 0.015 25.2 14.3 25 387-411 10-34 (164)
315 COG4999 Uncharacterized domain 25.8 1.3E+02 0.0028 29.1 5.0 59 883-946 8-66 (140)
316 cd00532 MGS-like MGS-like doma 25.8 1.5E+02 0.0033 28.0 5.7 60 903-964 35-105 (112)
317 PRK10742 putative methyltransf 25.6 2.5E+02 0.0053 30.9 7.8 59 885-945 109-178 (250)
318 cd06533 Glyco_transf_WecG_TagA 24.7 2.5E+02 0.0055 28.7 7.5 76 886-964 46-130 (171)
319 PF00430 ATP-synt_B: ATP synth 24.7 6.2E+02 0.013 24.2 11.8 38 412-449 31-68 (132)
320 COG3452 Predicted periplasmic 24.5 3.8E+02 0.0082 29.7 8.8 52 98-149 26-78 (297)
321 KOG1978 DNA mismatch repair pr 24.0 70 0.0015 39.5 3.6 25 638-662 51-75 (672)
322 PLN02823 spermine synthase 23.8 2.9E+02 0.0064 31.7 8.5 76 887-964 128-218 (336)
323 PRK08476 F0F1 ATP synthase sub 23.6 7.3E+02 0.016 24.6 13.0 42 389-430 11-57 (141)
324 TIGR00853 pts-lac PTS system, 23.6 4.9E+02 0.011 24.0 8.4 84 886-981 3-91 (95)
325 COG3105 Uncharacterized protei 23.6 5.4E+02 0.012 25.3 8.6 53 93-145 15-72 (138)
326 PRK09174 F0F1 ATP synthase sub 23.5 9E+02 0.02 25.7 13.6 23 411-433 84-106 (204)
327 PRK14176 bifunctional 5,10-met 23.1 1.1E+03 0.024 26.5 14.9 173 738-946 40-222 (287)
328 cd05212 NAD_bind_m-THF_DH_Cycl 22.9 2E+02 0.0043 28.7 6.0 41 735-775 25-69 (140)
329 PF07851 TMPIT: TMPIT-like pro 22.8 6.7E+02 0.014 28.8 10.7 80 414-495 7-90 (330)
330 PF06305 DUF1049: Protein of u 22.6 4E+02 0.0088 22.4 7.2 13 123-135 53-65 (68)
331 PRK10792 bifunctional 5,10-met 22.4 1.1E+03 0.025 26.4 15.1 171 738-944 35-215 (285)
332 PF01596 Methyltransf_3: O-met 22.3 2.5E+02 0.0055 29.8 7.1 56 738-793 70-130 (205)
333 PF00497 SBP_bac_3: Bacterial 22.0 3.2E+02 0.0069 27.9 7.9 127 657-791 9-159 (225)
334 TIGR01815 TrpE-clade3 anthrani 21.9 2.8E+02 0.006 35.4 8.4 76 885-964 515-594 (717)
335 cd01748 GATase1_IGP_Synthase T 21.6 3E+02 0.0064 28.7 7.5 75 889-982 1-87 (198)
336 PRK13460 F0F1 ATP synthase sub 21.5 8.8E+02 0.019 24.8 14.5 21 412-432 48-68 (173)
337 TIGR00417 speE spermidine synt 21.2 4.1E+02 0.0089 29.3 8.8 76 887-964 97-184 (270)
338 PRK11677 hypothetical protein; 21.1 5.7E+02 0.012 25.4 8.6 56 93-150 10-65 (134)
339 PRK03958 tRNA 2'-O-methylase; 20.8 7.8E+02 0.017 25.7 9.8 59 736-794 29-89 (176)
340 KOG1467 Translation initiation 20.8 2.4E+02 0.0051 33.8 6.7 83 887-981 386-476 (556)
341 PF01564 Spermine_synth: Sperm 20.7 2.2E+02 0.0048 31.1 6.4 76 887-964 101-189 (246)
342 PLN02781 Probable caffeoyl-CoA 20.4 4.7E+02 0.01 28.2 8.9 76 887-964 94-176 (234)
343 COG3105 Uncharacterized protei 20.2 4.2E+02 0.0091 26.1 7.2 27 386-412 5-31 (138)
344 PLN02366 spermidine synthase 20.2 4.5E+02 0.0097 29.8 8.9 77 887-964 116-204 (308)
345 CHL00118 atpG ATP synthase CF0 20.1 8.9E+02 0.019 24.3 12.8 19 412-430 54-72 (156)
346 TIGR01284 alt_nitrog_alph nitr 20.0 4.9E+02 0.011 31.2 9.7 78 882-964 321-402 (457)
No 1
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=4.7e-54 Score=548.36 Aligned_cols=468 Identities=34% Similarity=0.480 Sum_probs=378.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001941 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESG 501 (993)
Q Consensus 422 ~~~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg 501 (993)
++...+++++++++.|++|++++||||||||++|+|+++++.....++.+++|++.+..++++|..+|++++++++++++
T Consensus 278 ~l~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~ 357 (919)
T PRK11107 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAG 357 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455677788888999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred CcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEee
Q 001941 502 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVE 581 (993)
Q Consensus 502 ~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e 581 (993)
+..++..++++.+++++++..+...+..+++.+.+++++..|..+.+|+.+|+||+.||++||+|||+.|.|.|.+....
T Consensus 358 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~ 437 (919)
T PRK11107 358 KLVLENIPFSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRA 437 (919)
T ss_pred CcEEEEeecCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEEe
Confidence 99999999999999999999999999999999999998888878899999999999999999999999998887765322
Q ss_pred cccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCcc
Q 001941 582 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661 (993)
Q Consensus 582 ~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~ 661 (993)
. ..+...+.|+|.|+|+|||++.++++|+||+
T Consensus 438 ~------------------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~ 469 (919)
T PRK11107 438 L------------------------------------------------SNTKVQLEVQIRDTGIGISERQQSQLFQAFR 469 (919)
T ss_pred c------------------------------------------------CCCeeEEEEEEEEeCCCcCHHHHHHHhhhhc
Confidence 1 1122357899999999999999999999999
Q ss_pred ccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceE
Q 001941 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKA 741 (993)
Q Consensus 662 q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rv 741 (993)
+.+.+.+++.+|+||||+|||++++.|||+|+++|.+|+||+|+|++|+........ .......+.|.++
T Consensus 470 ~~~~~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~----------~~~~~~~~~g~~i 539 (919)
T PRK11107 470 QADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPII----------DGLPTDCLAGKRL 539 (919)
T ss_pred cCCCCCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCcccc----------ccCCccccCCCeE
Confidence 999888888899999999999999999999999999999999999999965332110 1112345779999
Q ss_pred EEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEE
Q 001941 742 LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLF 821 (993)
Q Consensus 742 Lvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (993)
+++||++..+..+..+|+.+|+.+..+.+..+ + ....+|++++|..++...... .....++..... .+.++
T Consensus 540 li~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~-l-----~~~~~d~il~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~i 610 (919)
T PRK11107 540 LYVEPNSAAAQATLDILSETPLEVTYSPTLSQ-L-----PEAHYDILLLGLPVTFREPLT--MLHERLAKAKSM-TDFLI 610 (919)
T ss_pred EEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH-h-----ccCCCCEEEecccCCCCCCHH--HHHHHHHhhhhc-CCcEE
Confidence 99999999999999999999999999998877 2 235689999998776433222 222222222211 22333
Q ss_pred EEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCCeEEEEeCChHHHHH
Q 001941 822 LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKV 901 (993)
Q Consensus 822 lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ILIVdDn~~n~~v 901 (993)
++..+......... ...|...++.||+....+...+............. .......+.+|||||||+.++..
T Consensus 611 ~~~~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~~~~-------~~~~~~~~~~vLivdd~~~~~~~ 682 (919)
T PRK11107 611 LALPCHEQVLAEQL-KQDGADACLSKPLSHTRLLPALLEPCHHKQPPLLP-------PTDESRLPLTVMAVDDNPANLKL 682 (919)
T ss_pred EEeCCcchhhHHHH-hhCCCceEECCCCCHHHHHHHHHHhhccccccccc-------ccccccCCCeEEEEeCCHHHHHH
Confidence 33332222222222 23367789999999999988887654211110000 00111234689999999999999
Q ss_pred HHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEEEEc
Q 001941 902 AAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAILVWK 965 (993)
Q Consensus 902 l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~~~~ 965 (993)
+..+|+..|+.+..+.+|.+|++.+. .+.||+||||+.||+|||+++++.||+. ..+|||+.+
T Consensus 683 l~~~L~~~~~~v~~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pii~lt 748 (919)
T PRK11107 683 IGALLEEQVEHVVLCDSGHQAVEQAK-QRPFDLILMDIQMPGMDGIRACELIRQLPHNQNTPIIAVT 748 (919)
T ss_pred HHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCEEEEe
Confidence 99999999999999999999999995 5789999999999999999999999974 468888774
No 2
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=6.5e-52 Score=523.70 Aligned_cols=451 Identities=29% Similarity=0.425 Sum_probs=353.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001941 420 YHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVE 499 (993)
Q Consensus 420 ~~~~~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skie 499 (993)
..+++++++++++++++|++|++++||||||||++|.|++++|.....+++++++++.+..++++|..+|+++++++|++
T Consensus 430 e~~L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie 509 (924)
T PRK10841 430 EESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIE 509 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556667778888999999999999999999999999999998888888889999999999999999999999999999
Q ss_pred cCCcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEE
Q 001941 500 SGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYL 579 (993)
Q Consensus 500 sg~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~ 579 (993)
++...++..+|++.+++++++..+...+..|++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|.+..
T Consensus 510 ~~~~~l~~~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~ 589 (924)
T PRK10841 510 SEQLKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRV 589 (924)
T ss_pred CCCceeeeEEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 99999999999999999999999999999999999999888888789999999999999999999999999988877643
Q ss_pred eecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCC
Q 001941 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659 (993)
Q Consensus 580 ~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFep 659 (993)
. ...+.|+|.|||+|||++.++++|+|
T Consensus 590 ~-----------------------------------------------------~~~l~i~V~DtG~GI~~e~~~~lFep 616 (924)
T PRK10841 590 D-----------------------------------------------------GDYLSFRVRDTGVGIPAKEVVRLFDP 616 (924)
T ss_pred e-----------------------------------------------------CCEEEEEEEEcCcCCCHHHHHHHhcc
Confidence 1 12478999999999999999999999
Q ss_pred ccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCc
Q 001941 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGM 739 (993)
Q Consensus 660 F~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 739 (993)
|++.+.+.++..+|+||||+||++++++|||+|+++|.+|+||+|+|++|+....... ......+.|.
T Consensus 617 F~~~~~~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~~------------~~~~~~~~g~ 684 (924)
T PRK10841 617 FFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPQ------------KKGVEGLQGK 684 (924)
T ss_pred cccCCCCCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCcccccc------------cccCcccCCC
Confidence 9998877777778999999999999999999999999999999999999986432211 1112346788
Q ss_pred eEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 001941 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (993)
Q Consensus 740 rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (993)
+++++++++.....+..+|+++|+++...... .....++++.|...........
T Consensus 685 ~i~l~~~~~~~~~~l~~~l~~~G~~v~~~~~~---------~~~~~d~~i~d~~~~~~~~~~~----------------- 738 (924)
T PRK10841 685 RCWLAVRNASLEQFLETLLQRSGIQVQRYEGQ---------EPTPEDVLITDDPVQKKWQGRA----------------- 738 (924)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCeEEEcccc---------cCCcCcEEEEcCccccccchhh-----------------
Confidence 99999999999999999999999999876532 1233466666654321100000
Q ss_pred EEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCCCCCCcccCCCCc-chhhhccCCCeEEEEeCChHH
Q 001941 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLLGRKILIVDDNNVN 898 (993)
Q Consensus 820 ~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~l~~~~ILIVdDn~~n 898 (993)
.+.+..... .. . ........+.+|.....+...+.+...............+. ........+.+|||||||+.+
T Consensus 739 ~~~~~~~~~--~~--~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~ 813 (924)
T PRK10841 739 VITFCRRHI--GI--P-LEIAPGEWVHSTATPHELPALLARIYRIELESDDSANALPSTDKAVSDNDDMMILVVDDHPIN 813 (924)
T ss_pred hhhhhhccc--cC--h-hhcccCceeeccCChHHHHHHHHHHhhcccccccccccccccccccccCCCCEEEEECCCHHH
Confidence 000000000 00 0 00011123456666677777666655432211111110000 001111245689999999999
Q ss_pred HHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEccc
Q 001941 899 LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWKLN 967 (993)
Q Consensus 899 ~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~~~ 967 (993)
+..+..+|++.||++..+.||.+|++.+. .+.||+||||++||+|||++++++||+. ..+|||+.+-+
T Consensus 814 ~~~l~~~L~~~G~~v~~a~~g~eal~~l~-~~~~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII~lTa~ 882 (924)
T PRK10841 814 RRLLADQLGSLGYQCKTANDGVDALNVLS-KNHIDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVIGVTAN 882 (924)
T ss_pred HHHHHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEEEEECC
Confidence 99999999999999999999999999995 5789999999999999999999999986 45788887443
No 3
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=1.7e-46 Score=479.04 Aligned_cols=384 Identities=34% Similarity=0.483 Sum_probs=297.8
Q ss_pred HHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 001941 424 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKL 503 (993)
Q Consensus 424 ~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l 503 (993)
.+.++++++++..+++|++++||||||||++|.|++++|.+...+..++++++.+..++++|..+++++++++|++++.+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~~~ 464 (921)
T PRK15347 385 AEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLDFSRIESGQM 464 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34455566777788999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred ceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecc
Q 001941 504 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 583 (993)
Q Consensus 504 ~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~ 583 (993)
.++..++++.++++++...+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+|||++|.|.|++...
T Consensus 465 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i~~~~~--- 541 (921)
T PRK15347 465 TLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRLRVKRH--- 541 (921)
T ss_pred cceecccCHHHHHHHHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEEEEEEc---
Confidence 99999999999999999999999999999999998888888899999999999999999999999999988776421
Q ss_pred cccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCcccc
Q 001941 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663 (993)
Q Consensus 584 ~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~ 663 (993)
...+.|+|+|||+|||++.+++||+||+|.
T Consensus 542 --------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~ 571 (921)
T PRK15347 542 --------------------------------------------------EQQLCFTVEDTGCGIDIQQQQQIFTPFYQA 571 (921)
T ss_pred --------------------------------------------------CCEEEEEEEEcCCCCCHHHHHHHhcCcccC
Confidence 124789999999999999999999999987
Q ss_pred CCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceEEE
Q 001941 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALV 743 (993)
Q Consensus 664 ~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rvLv 743 (993)
+. ..+|+||||+||+++++.|||+|.++|.+|+||+|+|++|+.....+.. +.|.
T Consensus 572 ~~----~~~g~GLGL~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~~~~~~~~~-----------------~~~~---- 626 (921)
T PRK15347 572 DT----HSQGTGLGLTIASSLAKMMGGELTLFSTPGVGSCFSLVLPLNEYAPPEP-----------------LKGE---- 626 (921)
T ss_pred CC----CCCCCchHHHHHHHHHHHcCCEEEEEecCCCceEEEEEEECCCCCCccc-----------------cccc----
Confidence 54 3469999999999999999999999999999999999999864211100 0000
Q ss_pred eCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEEEE
Q 001941 744 VDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLL 823 (993)
Q Consensus 744 vdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 823 (993)
..........+..+|+.+..........
T Consensus 627 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 654 (921)
T PRK15347 627 ----LSAPLALHRQLSAWGITCQPGHQNPALL------------------------------------------------ 654 (921)
T ss_pred ----ccchHHHHHHHHHcCCcccccccchhhc------------------------------------------------
Confidence 0011122334555555443221000000
Q ss_pred eccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCCeEEEEeCChHHHHHHH
Q 001941 824 ANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAA 903 (993)
Q Consensus 824 a~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ILIVdDn~~n~~vl~ 903 (993)
.+.. +.-+..+...+.+............. +. ...+.+|||||||+.++..+.
T Consensus 655 -----------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~iLivdd~~~~~~~l~ 707 (921)
T PRK15347 655 -----------------DPEL---AYLPGRLYDLLQQIIQGAPNEPVINL--PL-----QPWQLQILLVDDVETNRDIIG 707 (921)
T ss_pred -----------------chhh---hhcchHHHHHHHHHhhcCCCcccccC--CC-----CcccCCEEEEeCCHHHHHHHH
Confidence 0000 00001111222221111111000000 00 112458999999999999999
Q ss_pred HHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-----CCceEEEEc
Q 001941 904 AGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-----LLIAILVWK 965 (993)
Q Consensus 904 ~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-----~~~~~~~~~ 965 (993)
.+|+..|+++.++.+|.+|++.+. .+.||+||||++||+|||++++++||+. ..+|||+.+
T Consensus 708 ~~L~~~g~~v~~a~~~~~al~~~~-~~~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~pii~lt 773 (921)
T PRK15347 708 MMLVELGQQVTTAASGTEALELGR-QHRFDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDCMIVALT 773 (921)
T ss_pred HHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCCcEEEEe
Confidence 999999999999999999999985 5789999999999999999999999975 568888774
No 4
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=2.4e-46 Score=480.24 Aligned_cols=331 Identities=40% Similarity=0.647 Sum_probs=289.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001941 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 502 (993)
Q Consensus 423 ~~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~ 502 (993)
..+.++++++++++|++|++++||||||||++|.|++++|.+..+++++++|++.+..++++|..++++++++++++++.
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~ 529 (968)
T TIGR02956 450 HAKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGH 529 (968)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34456778888999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred cceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeec
Q 001941 503 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 582 (993)
Q Consensus 503 l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~ 582 (993)
..++..+|++.+++++++..+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+|||+.|.|.|.+...+.
T Consensus 530 ~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~~ 609 (968)
T TIGR02956 530 LSISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLNDD 609 (968)
T ss_pred CeeeecccCHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcCC
Confidence 99999999999999999999999999999999999987888888999999999999999999999999988877643210
Q ss_pred ccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccc
Q 001941 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662 (993)
Q Consensus 583 ~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q 662 (993)
..+.|+|.|+|+|||++.+++||+||++
T Consensus 610 ----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~f~~ 637 (968)
T TIGR02956 610 ----------------------------------------------------SSLLFEVEDTGCGIAEEEQATLFDAFTQ 637 (968)
T ss_pred ----------------------------------------------------CeEEEEEEeCCCCCCHHHHHHHHhhhhc
Confidence 1178999999999999999999999999
Q ss_pred cCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceEE
Q 001941 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKAL 742 (993)
Q Consensus 663 ~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rvL 742 (993)
.+ ..+..+|+||||+|||++++.|||+|.++|.+|+||+|+|++|+........ ..
T Consensus 638 ~~--~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~--------------~~-------- 693 (968)
T TIGR02956 638 AD--GRRRSGGTGLGLAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAED--------------SA-------- 693 (968)
T ss_pred cC--CCCCCCCccHHHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCcccc--------------cc--------
Confidence 87 3455689999999999999999999999999999999999999853211000 00
Q ss_pred EeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEEE
Q 001941 743 VVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFL 822 (993)
Q Consensus 743 vvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 822 (993)
.
T Consensus 694 ---------------------------------------------------------------------------~---- 694 (968)
T TIGR02956 694 ---------------------------------------------------------------------------T---- 694 (968)
T ss_pred ---------------------------------------------------------------------------c----
Confidence 0
Q ss_pred EeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCCeEEEEeCChHHHHHH
Q 001941 823 LANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVA 902 (993)
Q Consensus 823 la~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ILIVdDn~~n~~vl 902 (993)
.. | ....+.+|||||||+.++..+
T Consensus 695 -------------~~----------~---------------------------------~~~~~~~iLvvdd~~~~~~~l 718 (968)
T TIGR02956 695 -------------LT----------V---------------------------------IDLPPQRVLLVEDNEVNQMVA 718 (968)
T ss_pred -------------cc----------c---------------------------------ccccccceEEEcCcHHHHHHH
Confidence 00 0 001134799999999999999
Q ss_pred HHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCC----ceEEEEc
Q 001941 903 AAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLL----IAILVWK 965 (993)
Q Consensus 903 ~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~----~~~~~~~ 965 (993)
..+|+..||+|.++.||.+|++.+. .+.||+||||++||+|||+++++.||+... +|||+.+
T Consensus 719 ~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~pii~lt 784 (968)
T TIGR02956 719 QGFLTRLGHKVTLAESGQSALECFH-QHAFDLALLDINLPDGDGVTLLQQLRAIYGAKNEVKFIAFS 784 (968)
T ss_pred HHHHHHcCCEEEEECCHHHHHHHHH-CCCCCEEEECCCCCCCCHHHHHHHHHhCccccCCCeEEEEE
Confidence 9999999999999999999999996 478999999999999999999999998654 7888774
No 5
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=2.9e-45 Score=459.87 Aligned_cols=370 Identities=28% Similarity=0.418 Sum_probs=306.1
Q ss_pred HHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceee
Q 001941 428 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEA 507 (993)
Q Consensus 428 ~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~ 507 (993)
+++++++++|++|++++||||||||++|.|+++++.++..+++++++++.+..+++++..+++++++++++++++..++.
T Consensus 274 ~~l~~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~ 353 (779)
T PRK11091 274 DALEKASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDN 353 (779)
T ss_pred HHHHHHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcEEEe
Confidence 34455667889999999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred EeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccc
Q 001941 508 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 587 (993)
Q Consensus 508 ~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i 587 (993)
.++++.++++++...+...+..+++.+.+.+++..|..+.+|+.+|+||+.||++||+||+++|.|.|.+....
T Consensus 354 ~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~------ 427 (779)
T PRK11091 354 QPIDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEE------ 427 (779)
T ss_pred eccCHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEcc------
Confidence 99999999999999999999999999999988888878899999999999999999999999998887764210
Q ss_pred hhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCcccc-CCC
Q 001941 588 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV-GPS 666 (993)
Q Consensus 588 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~-~~s 666 (993)
...+.|+|.|+|+|||++.+++||+|||++ +.+
T Consensus 428 ----------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~ 461 (779)
T PRK11091 428 ----------------------------------------------GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSH 461 (779)
T ss_pred ----------------------------------------------CCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCC
Confidence 113789999999999999999999999999 555
Q ss_pred CcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceEEEeCC
Q 001941 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDP 746 (993)
Q Consensus 667 ~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rvLvvdd 746 (993)
.++..+|+||||+|||++|+.|||+|+++|.+|+||+|+|++|+......... .+........+.++|+|||
T Consensus 462 ~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~--------~~~~~~~~~~~~~ILivdD 533 (779)
T PRK11091 462 GGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVED--------AFDEDDMPLPALNILLVED 533 (779)
T ss_pred CCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEEEecccccccccc--------ccccccccccccceEEEcC
Confidence 56667899999999999999999999999999999999999999654322111 1111223345789999999
Q ss_pred chhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC-ceEEEEec
Q 001941 747 RPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ-SKLFLLAN 825 (993)
Q Consensus 747 ~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lla~ 825 (993)
++..+.++...|+.+|+.|..++++.+|++.+.. ..+|++++|..++..++ ...++.+++...... +.++++..
T Consensus 534 ~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~Dlvl~D~~mp~~~G---~e~~~~ir~~~~~~~~~~ii~~ta 608 (779)
T PRK11091 534 IELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP--DEYDLVLLDIQLPDMTG---LDIARELRERYPREDLPPLVALTA 608 (779)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEcCCCCCCCH---HHHHHHHHhccccCCCCcEEEEEC
Confidence 9999999999999999999999999999998863 56899999998865432 334566666543222 23333332
Q ss_pred cCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 826 SISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
.... ..... ...|+..++.||+....+..++.+.+..
T Consensus 609 ~~~~-~~~~~-~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 609 NVLK-DKKEY-LDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred CchH-hHHHH-HHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 2222 12222 2337889999999999999999988753
No 6
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-49 Score=484.12 Aligned_cols=724 Identities=31% Similarity=0.339 Sum_probs=521.6
Q ss_pred CccceeEeecCCccceeeeccccCcccHHHHHHHHhcCCcccccceeecccCCceeEEEEEeeccCCCCCCChHHHH-Hh
Q 001941 225 EEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERI-EA 303 (993)
Q Consensus 225 ~~Y~pvi~~~~~~~~~~g~D~~s~~~~r~~i~~Ar~tg~~~~t~p~~l~~~~~~G~~l~~pvy~~~~~~~~~~~~r~-~~ 303 (993)
.+|.|+++...+..+...+|...+.+++.+...++-+...+++.++....++..+...++-++...++.......+. +.
T Consensus 4 ~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~p~~~l~~~~~~~~~~~~~ 83 (786)
T KOG0519|consen 4 IESKPLKFNNDTISSIVTLDNDDGGEDLCNCLDSPYSERSVLTALKPQISSDFLIASAYFSIPIELLYFVSKSAVFPLEA 83 (786)
T ss_pred cccccccccccceeEEEEeecCCCchhhhhccccCccccchhhhhhhhhhhhhhhhhHhhccchhhccccccccccccee
Confidence 78999999999999999999999999999999999999999999998887777777777777776666555544553 33
Q ss_pred hcceeeeeeehHHHHHHHHHhhcccceEEEEeecccCCCCceecccCccCCCcceEEEeccCCCccccccceeh--hccc
Q 001941 304 TDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGSNVSDDGLWLVSTLNFGDPFRKHEMRCR--FKQK 381 (993)
Q Consensus 304 ~~G~v~~~~~v~~l~~~ll~~~~~~~~i~v~~yd~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~ 381 (993)
...+-...++........+.....+......++..........+|+........+++....+..+.+.+...++ ....
T Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~a~~~~~~lP~~~~~~~~~~~~~~~~~~~~~ 163 (786)
T KOG0519|consen 84 GVLSEFIAFDNLCGATHLLNGWTSYTSHRKQLILSETSTAILTAVVSCLTALNLVEVLPLLLLVKNRELELKQKVLHAAE 163 (786)
T ss_pred ccccchhhhhhhhhhcccchhhhcCCccchhheeeeeheeheeeecccccccccccccchhhccchhhhhhhcccccchh
Confidence 33555556666666665555555455555555555444444556666666555566666666666666777666 3333
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccccHhhHhHHHHHHHHH
Q 001941 382 APWPLLAISTSIGILVIASLVGHIFQATVNRIAKVEEDYHGMMELKKKAEAADVAKSQ--FLATVSHEIRTPMNGVLGML 459 (993)
Q Consensus 382 ~~~~~~~~~~~i~~lvi~~l~~~i~~~~~~r~~~l~~~~~~~~el~~~ae~a~~aKs~--Fla~vSHELRTPL~~I~g~l 459 (993)
..+.+.++..............+.......|...++....++.+.....+++...+++ |+++++||||+||++ |+.
T Consensus 164 l~~~~~~i~~s~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~e~~~~~~sq~~~~~~~sHeir~p~~~--~~~ 241 (786)
T KOG0519|consen 164 LDYEVGLINTSLETLSIVRMLTHEIRAALDRHTILKTTLVELQKKLASDEAAVWSPSQKGFLATLSHEIRTPLNG--GML 241 (786)
T ss_pred hhhhhhhhhhhhheeeeeeeeeeehhhhhchhhhhhHHHHHHHHHhhcchhcccCccchhhcccccceeeccccc--Ccc
Confidence 3444444444444444444555666677777777777777777777778888888888 999999999999999 888
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEec
Q 001941 460 DMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYIS 539 (993)
Q Consensus 460 elL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~ 539 (993)
..+.++..+.+++.+.+..+.++..+..++++++|.+++++|..++...+|++..+++.+.+.+.+.+..++..+....+
T Consensus 242 ~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~ 321 (786)
T KOG0519|consen 242 GGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFVISLLSELSQAKYAILVLDLS 321 (786)
T ss_pred eEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhhhhhhHHHhhcCCeEEEEecC
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCccccc
Q 001941 540 DRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 619 (993)
Q Consensus 540 ~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 619 (993)
...|..+.+|+.+++||+.|+++||+|||..|++.++++..+.......+..... ......+....+....+.
T Consensus 322 ~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i~~~~~~~~~~~~~~~~l~~~~-~e~~~~~~~~~~~~~~~~------ 394 (786)
T KOG0519|consen 322 SGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHLEESVIAREELSESNDVLLRAK-EEAHMAGKARIDFLQKMS------ 394 (786)
T ss_pred CCCcceeeccceeeeeeehhhccceecccccceEEEEEEeehhcchhhHHHHhhh-hhhhhccchhhhHHHHhc------
Confidence 9889999999999999999999999999999999999988765433221111000 000000000000000000
Q ss_pred CCCCCCCCC---CCCCCceeEEEEEEEcCCCCChhhHhh-ccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEE
Q 001941 620 QDGSTSPFK---SSSADLINLIVSVEDTGQGIPLEAQSR-IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFV 695 (993)
Q Consensus 620 ~~~~~~~~~---~~~~~~~~l~i~V~DtG~GI~~e~~~~-IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~ 695 (993)
.+...+.+ ..........+.+.|+|.||+.+.... +|.+|.|++.+.++.++|+|+|+.|+++++++|+|.+.+.
T Consensus 395 -~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~ 473 (786)
T KOG0519|consen 395 -HAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDI 473 (786)
T ss_pred -cccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhh
Confidence 00000000 011112345688999999999998888 9999999999999999999999999999999999999999
Q ss_pred EeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHH
Q 001941 696 SIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCL 775 (993)
Q Consensus 696 S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al 775 (993)
+....|++|+|.+++.............. .......+.|...++.|-+..+.++.....+.+|..|++..+...++
T Consensus 474 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~ 549 (786)
T KOG0519|consen 474 SCISLGKTFSFTLDLLTNLPKSVVGDEKR----LFQIILDFNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSLSLAF 549 (786)
T ss_pred hhhccCceeeEEEEeccCCCccchhhhhh----hhhhhhhhcchhhhhhccccCcceeEEEEecccCccccccccchhhh
Confidence 99999999999999987655433221111 12234556788888777777777788888888999998887555555
Q ss_pred HHHhcCCCc-ccEEEEeccccccCccchHH---HHHHHHhcCCCC--CceEEEEeccCCcccccccCCCCCCCcccccCC
Q 001941 776 SQIASGSKI-INMILVEQEVWEKDTSVSTL---FVNNLRKLGCGF--QSKLFLLANSISSSRANTSTDGVSIPSVIMKPL 849 (993)
Q Consensus 776 ~~l~~~~~~-~~~ilid~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl 849 (993)
-........ ...+.++...+......... .-...+. .... .+..+.++.........+............+|.
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (786)
T KOG0519|consen 550 WFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRD-LTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKS 628 (786)
T ss_pred hhcccccccchheEEeeeccccccCCCcchhhhhhhcccc-chhhcccccccccccchhhHHhhhcccccccccccCCcc
Confidence 443333333 45666777776444322211 1111111 1111 123333333322222223333222224455677
Q ss_pred cchHHHHHHHHHhcC-CCCCCcccCCCCcchhhhccCCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCC
Q 001941 850 RSSMLAASLQRAMGV-GNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP 928 (993)
Q Consensus 850 ~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~ 928 (993)
....+..++....+. +.+................+.|++|||||||.+|+++++.+|+++|++++++.+|.||++++.+
T Consensus 629 ~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~ 708 (786)
T KOG0519|consen 629 PSLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP 708 (786)
T ss_pred HHHHHHhhccccccccccccCCCcccccCccccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC
Confidence 777788887777754 3332222222222225567789999999999999999999999999999999999999999987
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhccC--CceEEE
Q 001941 929 PHQFDACFMDIQMPEMDGYEMLPCFESFL--LIAILV 963 (993)
Q Consensus 929 ~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~--~~~~~~ 963 (993)
++.||+||||+|||+|||+|++++||+.. ..|||=
T Consensus 709 ~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~pIvA 745 (786)
T KOG0519|consen 709 PHSYDVIFMDLQMPEMDGYEATREIRKKERWHLPIVA 745 (786)
T ss_pred CCcccEEEEEcCCcccchHHHHHHHHHhhcCCCCEEE
Confidence 79999999999999999999999999999 666653
No 7
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=1.1e-44 Score=462.37 Aligned_cols=336 Identities=33% Similarity=0.558 Sum_probs=286.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001941 418 EDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497 (993)
Q Consensus 418 ~~~~~~~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~sk 497 (993)
+...+..+.+.+.+++.++|++|++++||||||||++|.|++++|.+...++.++++++.+..++++|..++++++++++
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~ 504 (914)
T PRK11466 425 ELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSA 504 (914)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566777888899999999999999999999999999998888888899999999999999999999999999
Q ss_pred hhcCC--cceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEE
Q 001941 498 VESGK--LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575 (993)
Q Consensus 498 iesg~--l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v 575 (993)
++.+. ..++..+|++.+++++++..+...+..+++.+.+++++..|..+.+|+.+|+||+.||++||+||++.|.|.|
T Consensus 505 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g~I~i 584 (914)
T PRK11466 505 IEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDEGSIVL 584 (914)
T ss_pred HhCCCCcceecccccCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 99884 5677789999999999999999999999999999998888888999999999999999999999999998887
Q ss_pred EEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhh
Q 001941 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 655 (993)
Q Consensus 576 ~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~ 655 (993)
.+... ...+.|.|.|+|+|||++.+++
T Consensus 585 ~~~~~-----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~ 611 (914)
T PRK11466 585 RSRTD-----------------------------------------------------GEQWLVEVEDSGCGIDPAKLAE 611 (914)
T ss_pred EEEEc-----------------------------------------------------CCEEEEEEEECCCCCCHHHHHH
Confidence 66421 1146799999999999999999
Q ss_pred ccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcc
Q 001941 656 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735 (993)
Q Consensus 656 IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (993)
+|+||++.+ ...+|+||||+||+++++.|||+|.+.|.+|+||+|+|++|+....... +.
T Consensus 612 if~~f~~~~----~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~---------------~~- 671 (914)
T PRK11466 612 IFQPFVQVS----GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPV---------------PK- 671 (914)
T ss_pred HhchhhcCC----CCCCCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEcccccccc---------------cc-
Confidence 999999863 3457999999999999999999999999999999999999984321000 00
Q ss_pred cCCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
T Consensus 672 -------------------------------------------------------------------------------- 671 (914)
T PRK11466 672 -------------------------------------------------------------------------------- 671 (914)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCCeEEEEeCC
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ILIVdDn 895 (993)
.+ . .| ....+++|||||||
T Consensus 672 -~~------------------~---------~~---------------------------------~~~~~~~vLivdD~ 690 (914)
T PRK11466 672 -TV------------------N---------QA---------------------------------VRLDGLRLLLIEDN 690 (914)
T ss_pred -cc------------------c---------cc---------------------------------cccCCcceEEEeCC
Confidence 00 0 00 00124589999999
Q ss_pred hHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEccc
Q 001941 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWKLN 967 (993)
Q Consensus 896 ~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~~~ 967 (993)
+.++..+..+|+..||+|.++.+|.+|++.+...+.||+||||++||+|||++++++||+. ..+|+|+.+-.
T Consensus 691 ~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii~~t~~ 763 (914)
T PRK11466 691 PLTQRITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQYPSLVLIGFSAH 763 (914)
T ss_pred HHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEeCC
Confidence 9999999999999999999999999999988544579999999999999999999999975 56788877443
No 8
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=7.9e-44 Score=444.61 Aligned_cols=303 Identities=18% Similarity=0.291 Sum_probs=261.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001941 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (993)
Q Consensus 421 ~~~~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skies 500 (993)
+++.+++++++++.++|++|++++||||||||++|.|+++++.+...+++++++++.+..++++|..+++++++++|+++
T Consensus 434 ~~L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~ 513 (894)
T PRK10618 434 KKLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLET 513 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556667788888999999999999999999999999999988777788899999999999999999999999999999
Q ss_pred CCcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEe
Q 001941 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580 (993)
Q Consensus 501 g~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~ 580 (993)
|+..++..+|++.+++++++..+...+..|++.+.+.++...+..+.+|+.+|+||+.||++||+|||+.|.|.|.+...
T Consensus 514 ~~~~l~~~~~~L~~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~~~ 593 (894)
T PRK10618 514 QDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVDQD 593 (894)
T ss_pred CCCcccceeECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc
Confidence 99999999999999999999999999999999999888766667789999999999999999999999999888776432
Q ss_pred ecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCc
Q 001941 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (993)
Q Consensus 581 e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (993)
.. ....+.|+|.|||+|||++.+++||+||
T Consensus 594 ~~--------------------------------------------------~~~~l~I~V~DtG~GI~~e~l~~IFePF 623 (894)
T PRK10618 594 ES--------------------------------------------------SPDRLTIRILDTGAGVSIKELDNLHFPF 623 (894)
T ss_pred cC--------------------------------------------------CCcEEEEEEEECCCCCCHHHHHHhcCcc
Confidence 10 1134789999999999999999999999
Q ss_pred cccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCce
Q 001941 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMK 740 (993)
Q Consensus 661 ~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~r 740 (993)
++.+.+ .+..+|+||||+|||+||+.|||+|+++|.+|+||+|+|++|+....... +...+..+.|.+
T Consensus 624 ~t~~~~-~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~~~~~~~-----------~~~~~~~l~g~~ 691 (894)
T PRK10618 624 LNQTQG-DRYGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKMLAADPEV-----------EEEEEKLLDGVT 691 (894)
T ss_pred ccCCCC-CCCCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEccCCcccc-----------cccccccCCCCE
Confidence 986543 34457999999999999999999999999999999999999996432111 011223467899
Q ss_pred EEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEecc
Q 001941 741 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQE 793 (993)
Q Consensus 741 vLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~ 793 (993)
||+|||++..+.++..+|+++|+.|..+.+.. ....+|++++|.+
T Consensus 692 vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~~--------~~~~~Dlvl~D~~ 736 (894)
T PRK10618 692 VLLDITSEEVRKIVTRQLENWGATCITPDERL--------ISQEYDIFLTDNP 736 (894)
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCEEEEcCccc--------cCCCCCEEEECCC
Confidence 99999999999999999999999999987632 2355888888854
No 9
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=5.1e-41 Score=439.86 Aligned_cols=346 Identities=29% Similarity=0.466 Sum_probs=281.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001941 417 EEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT-QQDYVRTAQASGKALVSLINEVLDQ 495 (993)
Q Consensus 417 ~~~~~~~~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~-q~~~l~~i~~s~~~L~~lIndlLd~ 495 (993)
++..+.+++.+++++++..++++|++++||||||||++|.|++++|.+...+.+ ..++++.+..++++|..++++++++
T Consensus 692 ~~~~~~l~~~~~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~ 771 (1197)
T PRK09959 692 RDLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDV 771 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555566666777889999999999999999999999999976655444 4578899999999999999999999
Q ss_pred HhhhcCCcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEE
Q 001941 496 AKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFV 575 (993)
Q Consensus 496 skiesg~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v 575 (993)
++++++...+...++++.+++++++..+...+..+++.+.+..+...+..+.+|+.+|+||+.||++||+||++.|.+.+
T Consensus 772 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i 851 (1197)
T PRK09959 772 DKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKI 851 (1197)
T ss_pred HHhhcCCceeeeeeeCHHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 99999999999999999999999999999999999999887654333446889999999999999999999999988776
Q ss_pred EEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhh
Q 001941 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSR 655 (993)
Q Consensus 576 ~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~ 655 (993)
.+..... ..+...+.|+|.|+|+|||++.+++
T Consensus 852 ~~~~~~~------------------------------------------------~~~~~~~~i~V~D~G~Gi~~~~~~~ 883 (1197)
T PRK09959 852 TTSLGHI------------------------------------------------DDNHAVIKMTIMDSGSGLSQEEQQQ 883 (1197)
T ss_pred EEEEeee------------------------------------------------cCCceEEEEEEEEcCCCCCHHHHHH
Confidence 6532110 0112347799999999999999999
Q ss_pred ccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcc
Q 001941 656 IFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSE 735 (993)
Q Consensus 656 IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (993)
||+||++.+. .+..+|+||||+|||++++.|||+|+++|.+|+||+|++++|+........ . .
T Consensus 884 iF~~f~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~----------~---~-- 946 (1197)
T PRK09959 884 LFKRYSQTSA--GRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVAT----------V---E-- 946 (1197)
T ss_pred hhcccccccc--CCCCCCcCchHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhcc----------c---c--
Confidence 9999998654 234579999999999999999999999999999999999999742110000 0 0
Q ss_pred cCCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
T Consensus 947 -------------------------------------------------------------------------------- 946 (1197)
T PRK09959 947 -------------------------------------------------------------------------------- 946 (1197)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCCeEEEEeCC
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDN 895 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ILIVdDn 895 (993)
+ ... .|. ....+.+||||||+
T Consensus 947 --~----------------~~~---------~~~--------------------------------~~~~~~~iLivdd~ 967 (1197)
T PRK09959 947 --A----------------KAE---------QPI--------------------------------TLPEKLSILIADDH 967 (1197)
T ss_pred --c----------------ccc---------ccc--------------------------------ccccCceEEEcCCC
Confidence 0 000 000 00013489999999
Q ss_pred hHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEccc
Q 001941 896 NVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWKLN 967 (993)
Q Consensus 896 ~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~~~ 967 (993)
+.++..+..+|+..|+++.++.++.+|++.+. .+.||+||+|++||+|||++++++||+. ..+|||+.+-.
T Consensus 968 ~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~i~~~~~~~pii~lt~~ 1039 (1197)
T PRK09959 968 PTNRLLLKRQLNLLGYDVDEATDGVQALHKVS-MQHYDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTAN 1039 (1197)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh-cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECC
Confidence 99999999999999999999999999999995 5789999999999999999999999975 45788877443
No 10
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=3.4e-36 Score=379.50 Aligned_cols=365 Identities=19% Similarity=0.277 Sum_probs=272.6
Q ss_pred HHHHHhhccccHhhHhHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHH
Q 001941 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDT-ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 513 (993)
Q Consensus 435 ~aKs~Fla~vSHELRTPL~~I~g~lelL~~~-~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~ 513 (993)
++.++|++++||||||||++|.|+++++.+. ..+....++++.+..+++++..++++++++++...+ ...++++.
T Consensus 448 ~~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~----~~~~~~l~ 523 (828)
T PRK13837 448 EAVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGER----NTKPFDLS 523 (828)
T ss_pred HHHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCcEEcHH
Confidence 3567899999999999999999999987654 234466789999999999999999999999996544 34679999
Q ss_pred HHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccc-CCeEEEEEEEeecccccchhhhh
Q 001941 514 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETE 592 (993)
Q Consensus 514 ~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~-~G~I~v~v~~~e~~~~~i~i~~~ 592 (993)
+++++++..+... ..+++.+.+..++. +..+.+|+.+|.||+.||++||+||++ .|.|.|++.........
T Consensus 524 ~ll~~~~~~~~~~-~~~~i~l~~~~~~~-~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~------ 595 (828)
T PRK13837 524 ELVTEIAPLLRVS-LPPGVELDFDQDQE-PAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPK------ 595 (828)
T ss_pred HHHHHHHHHHHHH-ccCCcEEEEEeCCC-CceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeeccccc------
Confidence 9999999988753 45678888777654 446889999999999999999999985 46777766532110000
Q ss_pred cccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCC
Q 001941 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (993)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~ 672 (993)
.. ......+...+.|+|+|+|+|||++.+++||+||++.+. +
T Consensus 596 ------~~--------------------------~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~------~ 637 (828)
T PRK13837 596 ------VL--------------------------SHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA------G 637 (828)
T ss_pred ------cc--------------------------ccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC------C
Confidence 00 000112234688999999999999999999999996422 7
Q ss_pred CccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceEEEeCCchhhHH
Q 001941 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAK 752 (993)
Q Consensus 673 GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rvLvvdd~~~~~~ 752 (993)
|+||||+|||++++.|||+|++.|.+|+||+|+|++|........... ...+ ...+...|.+||+|||++..+.
T Consensus 638 G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~~-----~~~~-~~~~~~~~~~ILvVddd~~~~~ 711 (828)
T PRK13837 638 GTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQA-----FFGP-GPLPRGRGETVLLVEPDDATLE 711 (828)
T ss_pred CCcchHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCccc-----cCCC-cccCCCCCCEEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999986533221110 0011 1112346789999999999999
Q ss_pred HHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEEEEeccCCcccc
Q 001941 753 VSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRA 832 (993)
Q Consensus 753 v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lla~~~~~~~~ 832 (993)
.+...|+.+|+.+..+.++.++++.+......+|++++ .+...+ ....+..++...+ ..|.+++... ......
T Consensus 712 ~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~---g~~l~~~l~~~~~-~ipIIvls~~-~~~~~~ 784 (828)
T PRK13837 712 RYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLD---EEQAAAALHAAAP-TLPIILGGNS-KTMALS 784 (828)
T ss_pred HHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCC---HHHHHHHHHhhCC-CCCEEEEeCC-Cchhhh
Confidence 99999999999999999999999998776667899999 332222 2234555554321 1244443332 222222
Q ss_pred cccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 833 NTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 833 ~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
.... ..| ..++.||++...+...+...+..
T Consensus 785 ~~~~-~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 785 PDLL-ASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred hhHh-hcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 2222 225 88999999999999999888753
No 11
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-39 Score=341.51 Aligned_cols=226 Identities=27% Similarity=0.477 Sum_probs=197.2
Q ss_pred HHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEee
Q 001941 433 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVT--QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 510 (993)
Q Consensus 433 a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~--q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~ 510 (993)
.++.+..|.+++|||+||||+++.++++.|.+....+. ...++..-+...++|.+++||+|.++|++.+...++.+.+
T Consensus 221 ~e~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~i 300 (459)
T COG5002 221 VERERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWI 300 (459)
T ss_pred HHHHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHHH
Confidence 34456789999999999999999999999998876544 5789999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhhhhccCcE-EEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCC-eEEEEEEEeecccccch
Q 001941 511 NLRAILDDVLSLFSGKSQDKGVE-LAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIE 588 (993)
Q Consensus 511 dL~~ll~~vl~~~~~~a~~k~I~-l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~v~~~e~~~~~i~ 588 (993)
|+...+..++..|.....+..+. +.-++ +..+.++..||.++-||+.|+++||+||+|+| .|++.+...
T Consensus 301 nft~fl~~ii~R~e~~~~~e~~~~~vR~~-p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~-------- 371 (459)
T COG5002 301 NFTAFLNEIINRFEMILKKETIARFVRDI-PKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQR-------- 371 (459)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHhcC-CCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeee--------
Confidence 99999999999998764444433 22233 33467888999999999999999999999764 666665321
Q ss_pred hhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCc
Q 001941 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668 (993)
Q Consensus 589 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s 668 (993)
..++.++|.|.|.|||.+++++||++||++|..++
T Consensus 372 ---------------------------------------------~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARs 406 (459)
T COG5002 372 ---------------------------------------------ETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARS 406 (459)
T ss_pred ---------------------------------------------CcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhhh
Confidence 12578999999999999999999999999999999
Q ss_pred CcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 669 ~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
|+.|||||||+|+|.+|+.|||.||.+|..|+||+|+|+||...
T Consensus 407 R~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~ 450 (459)
T COG5002 407 RKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSG 450 (459)
T ss_pred hcCCCCchhHHHHHHHHHHhCCeEEEecccCCceEEEEEecccC
Confidence 99999999999999999999999999999999999999999864
No 12
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=3e-35 Score=339.21 Aligned_cols=244 Identities=25% Similarity=0.382 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHHHHHH
Q 001941 414 AKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-------VTQQDYVRTAQASGKALV 486 (993)
Q Consensus 414 ~~l~~~~~~~~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~-------~~q~~~l~~i~~s~~~L~ 486 (993)
.++.+....+.+.++++++..+++.+|++++||||||||++|.+.++++.+...+ +..+++++.+..+.++|.
T Consensus 128 ~~l~~~~~~l~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (380)
T PRK09303 128 LQLSDELFVLRQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIE 207 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666677899999999999999999999999999754332 225678899999999999
Q ss_pred HHHHHHHHHHhhhcCCcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHh
Q 001941 487 SLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK 566 (993)
Q Consensus 487 ~lIndlLd~skiesg~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiK 566 (993)
.++++++++++.+.+...++..++|+.+++++++..+...+..+++.+.++++...| .+.+|+.+++||+.||++||+|
T Consensus 208 ~li~~ll~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NAik 286 (380)
T PRK09303 208 RLITDLLEVGRTRWEALRFNPQKLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNAIK 286 (380)
T ss_pred HHHHHHHHHHHhhcCCceeccccCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998877665 5789999999999999999999
Q ss_pred cccC-CeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcC
Q 001941 567 FTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTG 645 (993)
Q Consensus 567 fT~~-G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG 645 (993)
|++. |.|.+.+... +...+.|+|.|+|
T Consensus 287 ~~~~~~~I~i~~~~~----------------------------------------------------~~~~v~i~V~D~G 314 (380)
T PRK09303 287 YTPEGGTITLSMLHR----------------------------------------------------TTQKVQVSICDTG 314 (380)
T ss_pred cCCCCceEEEEEEec----------------------------------------------------CCCEEEEEEEEcC
Confidence 9976 4555543210 1124789999999
Q ss_pred CCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 646 QGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 646 ~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
+|||++.+++||+|||+.+. ++..+|+||||+|||++++.|||+|++.|.+++||+|+|++|..+
T Consensus 315 ~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~ 379 (380)
T PRK09303 315 PGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQGSCFHFTLPVYR 379 (380)
T ss_pred CCCCHHHHHHHccCceeCCC--CCCCCcccccHHHHHHHHHHcCCEEEEEecCCCccEEEEEEecCC
Confidence 99999999999999998865 445679999999999999999999999999999999999999853
No 13
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-35 Score=345.92 Aligned_cols=225 Identities=24% Similarity=0.425 Sum_probs=195.3
Q ss_pred HHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcC--CCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceee
Q 001941 431 EAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDVT-QQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEA 507 (993)
Q Consensus 431 e~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~--~l~~~-q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~ 507 (993)
.+.++.++.|++++||||||||++|.|.++.|.+. .++++ +.+.+..+.+.+++|..+|+++||++|+++|.+.++.
T Consensus 654 ~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~ 733 (890)
T COG2205 654 AERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKL 733 (890)
T ss_pred HHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccc
Confidence 34466789999999999999999999999998764 34444 6789999999999999999999999999999999999
Q ss_pred EeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCe-EEEEEEEeeccccc
Q 001941 508 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH-IFVTVYLVEEVVDS 586 (993)
Q Consensus 508 ~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~-I~v~v~~~e~~~~~ 586 (993)
.+..+.+++.+++........... +.++++++.| .+..|+..++|||.||++||+||++.|. |.+.+...
T Consensus 734 ~~~~veEvVg~Al~r~~k~~~~~~--i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~------ 804 (890)
T COG2205 734 DWVLVEEVVGEALQRLRKRFTGHK--IVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVE------ 804 (890)
T ss_pred chhhHHHHHHHHHHHhhhhcCCce--EEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEe------
Confidence 999999999999987766554444 5666777765 6889999999999999999999998875 66665422
Q ss_pred chhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCC
Q 001941 587 IEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS 666 (993)
Q Consensus 587 i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s 666 (993)
..+++|+|.|+|+|||++++++||++||+.+..
T Consensus 805 -----------------------------------------------~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~ 837 (890)
T COG2205 805 -----------------------------------------------RENVVFSVIDEGPGIPEGELERIFDKFYRGNKE 837 (890)
T ss_pred -----------------------------------------------cceEEEEEEeCCCCCChhHHHHhhhhhhcCCCC
Confidence 235789999999999999999999999998763
Q ss_pred CcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCC
Q 001941 667 ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713 (993)
Q Consensus 667 ~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~ 713 (993)
.. ..|+|||||||+.||+.|||+|++.+.+++|++|+|++|....
T Consensus 838 ~~--~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 838 SA--TRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEED 882 (890)
T ss_pred CC--CCCccccHHHHHHHHHHcCCeEEEEEcCCCceEEEEEeecCCC
Confidence 33 6799999999999999999999999999999999999998643
No 14
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=4.9e-32 Score=317.50 Aligned_cols=220 Identities=26% Similarity=0.389 Sum_probs=187.7
Q ss_pred HHHHhhccccHhhHhHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHH
Q 001941 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (993)
Q Consensus 436 aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l-~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ 514 (993)
++.+|++++||||||||++|.|+++++.+... ++...++++.+.+++++|..++++++++++++.+........+++..
T Consensus 203 ~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~ 282 (430)
T PRK11006 203 ARRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPM 282 (430)
T ss_pred HHHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHH
Confidence 45689999999999999999999999876543 34557789999999999999999999999999887766677889999
Q ss_pred HHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCC-eEEEEEEEeecccccchhhhhc
Q 001941 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEVETEL 593 (993)
Q Consensus 515 ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~v~~~e~~~~~i~i~~~~ 593 (993)
+++.+...+.... .+++.+.+.+++.. .+.+|+.+|+|++.||++||+||+++| .|.+++...
T Consensus 283 ~~~~l~~~~~~~~-~~~~~i~~~~~~~~--~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~------------- 346 (430)
T PRK11006 283 MLRVLEREAQTLS-QGKHTITFEVDNSL--KVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRV------------- 346 (430)
T ss_pred HHHHHHHHHHHHh-cCCcEEEEecCCCc--eEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc-------------
Confidence 9988777665544 67778887776543 478999999999999999999999764 455544211
Q ss_pred ccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCC
Q 001941 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (993)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~G 673 (993)
...+.|+|+|+|+|||++.++++|+|||+.+.+.++..+|
T Consensus 347 ----------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G 386 (430)
T PRK11006 347 ----------------------------------------PQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGG 386 (430)
T ss_pred ----------------------------------------CCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCC
Confidence 1136799999999999999999999999988877777789
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 001941 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (993)
Q Consensus 674 tGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~ 711 (993)
+||||+|||++++.|||+|.++|.+|+||+|+|++|..
T Consensus 387 ~GLGL~ivk~iv~~~gG~i~i~s~~~~Gt~f~i~lP~~ 424 (430)
T PRK11006 387 SGLGLAIVKHALSHHDSRLEIESEVGKGTRFSFVLPER 424 (430)
T ss_pred CchHHHHHHHHHHHCCCEEEEEecCCCceEEEEEechH
Confidence 99999999999999999999999999999999999864
No 15
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=5.1e-30 Score=307.17 Aligned_cols=366 Identities=19% Similarity=0.253 Sum_probs=262.4
Q ss_pred HHHHhhccccHhhHhHHHHHHHHHHHHhcCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEee
Q 001941 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-----LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 510 (993)
Q Consensus 436 aKs~Fla~vSHELRTPL~~I~g~lelL~~~~-----l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~ 510 (993)
...++++.++||+||||+.|.++++++.... ......++++.+...++++..++++++++++.. .+....+
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~ 237 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVL 237 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCccc
Confidence 3467899999999999999999999875321 223445778889999999999999999998743 3345668
Q ss_pred cHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCC-eEEEEEEEeecccccchh
Q 001941 511 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEV 589 (993)
Q Consensus 511 dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~v~~~e~~~~~i~i 589 (993)
++..+++.+...+. ....+++.+.+..++..+ .+.+|+.+++|++.||+.||+||++.| .|.+.+..........
T Consensus 238 ~l~~~i~~~~~~~~-~~~~~~~~i~~~~~~~~~-~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~-- 313 (540)
T PRK13557 238 NLNGLVSGMGELAE-RTLGDAVTIETDLAPDLW-NCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDL-- 313 (540)
T ss_pred CHHHHHHHHHHHHH-HhcCCCeEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCcccc--
Confidence 99999998877654 334577777777666554 367899999999999999999998654 4444432111000000
Q ss_pred hhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcC
Q 001941 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669 (993)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~ 669 (993)
..| ....+...+.|+|.|+|+|||++.++++|+||++.+ .
T Consensus 314 --------------------~~~----------------~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~----~ 353 (540)
T PRK13557 314 --------------------AMY----------------HGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTK----E 353 (540)
T ss_pred --------------------ccc----------------cCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccC----C
Confidence 000 001123357899999999999999999999999653 2
Q ss_pred cCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceEEEeCCchh
Q 001941 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPI 749 (993)
Q Consensus 670 ~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rvLvvdd~~~ 749 (993)
..+|+||||+|||++++.|||+|.++|.+|+||+|+|++|.......... ..+........+.+++++||++.
T Consensus 354 ~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~~-------~~~~~~~~~~~~~~iliv~~~~~ 426 (540)
T PRK13557 354 EGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPEQ-------EPKARAIDRGGTETILIVDDRPD 426 (540)
T ss_pred CCCCCCccHHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCCC-------CCCCcccccCCCceEEEEcCcHH
Confidence 34699999999999999999999999999999999999998643322111 01111223456789999999999
Q ss_pred hHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccc-cCccchHHHHHHHHhcCCCCCceEEEEeccCC
Q 001941 750 RAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE-KDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS 828 (993)
Q Consensus 750 ~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lla~~~~ 828 (993)
.+..+...|+..|+.+..+.+..++++.+.. ...+|++++|..++. .+ ....++.+++..+ ...+++++....
T Consensus 427 ~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~~d~vi~d~~~~~~~~---~~~~~~~l~~~~~--~~~ii~~~~~~~ 500 (540)
T PRK13557 427 VAELARMILEDFGYRTLVASNGREALEILDS-HPEVDLLFTDLIMPGGMN---GVMLAREARRRQP--KIKVLLTTGYAE 500 (540)
T ss_pred HHHHHHHHHHhcCCeEEEeCCHHHHHHHHhc-CCCceEEEEeccCCCCCC---HHHHHHHHHHhCC--CCcEEEEcCCCc
Confidence 9999999999999999999999999988743 236899999987653 22 2334566665322 223333333222
Q ss_pred cccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 829 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 829 ~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
...... ....|...++.||+....+...+..++.
T Consensus 501 ~~~~~~-~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 501 ASIERT-DAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred hhhhhh-hccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 211111 1222566899999999999999887664
No 16
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=6.8e-31 Score=308.23 Aligned_cols=228 Identities=25% Similarity=0.374 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001941 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 502 (993)
Q Consensus 423 ~~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~ 502 (993)
++++.++.++..+.+.+|++++||||||||+.|.+.++++.+.. ..+. +.+.+..+++..++++++.+++++.+.
T Consensus 198 fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~~~--~~~~---~~i~~~~~~l~~li~~ll~~~rl~~~~ 272 (433)
T PRK10604 198 FNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNLS--AAES---QALNRDIGQLEALIEELLTYARLDRPQ 272 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcCCC--cHHH---HHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 34445556666667889999999999999999999999886332 2222 237778899999999999999999998
Q ss_pred cceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeec
Q 001941 503 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 582 (993)
Q Consensus 503 l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~ 582 (993)
..+...++++.+++++++..+......+++++.+..+ +..+.+|+..+++++.||++||+||++ |.|.|++...+
T Consensus 273 ~~~~~~~~~l~~~l~~~i~~~~~~~~~~~i~~~~~~~---~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~~~~~~- 347 (433)
T PRK10604 273 NELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDTPHQ---GDYGALDMRLMERVLDNLLNNALRYAH-SRVRVSLLLDG- 347 (433)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHhhcCcEEEEecCC---CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEC-
Confidence 8888889999999999999998877777777665322 335668999999999999999999985 67777664221
Q ss_pred ccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccc
Q 001941 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662 (993)
Q Consensus 583 ~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q 662 (993)
..+.|+|+|+|+|||++.++++|+|||+
T Consensus 348 ----------------------------------------------------~~~~I~V~D~G~Gi~~e~~~~if~~f~r 375 (433)
T PRK10604 348 ----------------------------------------------------NQACLIVEDDGPGIPPEERERVFEPFVR 375 (433)
T ss_pred ----------------------------------------------------CEEEEEEEEcCCCCCHHHHhhcCCCCcc
Confidence 1367999999999999999999999999
Q ss_pred cCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 663 ~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
.+.+++++.+|+||||+|||++++.|||+|.++|.+++|++|++++|...
T Consensus 376 ~~~~~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~ 425 (433)
T PRK10604 376 LDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVWH 425 (433)
T ss_pred CCCCCCCCCCCccchHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEeCCC
Confidence 98887777789999999999999999999999999999999999999864
No 17
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.97 E-value=1.6e-30 Score=306.95 Aligned_cols=214 Identities=21% Similarity=0.325 Sum_probs=165.6
Q ss_pred HHHHhhccccHhhHhHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecH
Q 001941 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV---TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 512 (993)
Q Consensus 436 aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~---~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL 512 (993)
...++++.++|||||||++|.++++++.+...+. ...+.+..+......+...+.++++ ........++|+
T Consensus 275 ~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~dl 348 (494)
T TIGR02938 275 AIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIP------QSPQEIVVPVNL 348 (494)
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHhhc------cCcccccccccH
Confidence 3456788889999999999999999987653332 2333444444444333333443332 223344568999
Q ss_pred HHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCe---EEEEEEEeecccccchh
Q 001941 513 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH---IFVTVYLVEEVVDSIEV 589 (993)
Q Consensus 513 ~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~---I~v~v~~~e~~~~~i~i 589 (993)
.+++++++..+...+..+++.+.+..++..| .+.+|+.+|+||+.||++||+||++.+. ..+.+...
T Consensus 349 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~--------- 418 (494)
T TIGR02938 349 NQILRDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTA--------- 418 (494)
T ss_pred HHHHHHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEE---------
Confidence 9999999999998889999999988876666 5779999999999999999999986652 12222110
Q ss_pred hhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcC
Q 001941 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669 (993)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~ 669 (993)
.+...+.|+|+|||+|||++.+++||+||++++.+
T Consensus 419 ------------------------------------------~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~--- 453 (494)
T TIGR02938 419 ------------------------------------------LNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG--- 453 (494)
T ss_pred ------------------------------------------ecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC---
Confidence 01124689999999999999999999999987643
Q ss_pred cCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 001941 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (993)
Q Consensus 670 ~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~ 710 (993)
..+|+||||+|||.||+.|||+|+++|.+|+||+|+|+||+
T Consensus 454 ~~~G~GlGL~i~~~iv~~~gG~i~~~s~~~~G~~f~i~lp~ 494 (494)
T TIGR02938 454 SRKHIGMGLSVAQEIVADHGGIIDLDDDYSEGCRIIVEFRV 494 (494)
T ss_pred CCCCCcccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEecC
Confidence 26799999999999999999999999999999999999985
No 18
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.97 E-value=9.4e-30 Score=302.33 Aligned_cols=222 Identities=20% Similarity=0.280 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeE
Q 001941 429 KAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 508 (993)
Q Consensus 429 ~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~ 508 (993)
+.++..+...+|++++||||||||+.|.+.++.|.+.... ...+....+.+...++..+++++++.++.+++...+...
T Consensus 258 ~~~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~-~~~~~~~~~~~~i~ri~~~i~~ll~~~~~~~~~~~~~~~ 336 (485)
T PRK10815 258 NERERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQM-SVEQAEPIMLEQISRISQQIGYYLHRASMRSEHNLLSRE 336 (485)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc
Confidence 3344445567899999999999999999999998765422 223334566778889999999999999999988888888
Q ss_pred eecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccch
Q 001941 509 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIE 588 (993)
Q Consensus 509 ~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~ 588 (993)
.+++..++++++..+...+..+++.+.+++++.. .+.+|+..+.+|+.||++||+||+++ .+.|++...
T Consensus 337 ~~~l~~ll~~~~~~l~~~~~~~~i~i~~~~~~~~--~v~~d~~~l~~vl~NLi~NAik~~~~-~i~I~~~~~-------- 405 (485)
T PRK10815 337 LHSVAPLLDNLTSALNKVYQRKGVNITLDISPEI--TFVGEKNDFMEVMGNVLDNACKYCLE-FVEISARQT-------- 405 (485)
T ss_pred eecHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhcCC-cEEEEEEEe--------
Confidence 9999999999999999999999999998876543 56799999999999999999999965 344444321
Q ss_pred hhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCc
Q 001941 589 VETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS 668 (993)
Q Consensus 589 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s 668 (993)
...+.|+|+|+|+|||++.++++|+||++.+.+
T Consensus 406 ---------------------------------------------~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~-- 438 (485)
T PRK10815 406 ---------------------------------------------DEHLHIVVEDDGPGIPESKRELIFDRGQRADTL-- 438 (485)
T ss_pred ---------------------------------------------CCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC--
Confidence 124679999999999999999999999986432
Q ss_pred CcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 001941 669 RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (993)
Q Consensus 669 ~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~ 711 (993)
.+|+||||+||+++++.|||+|.++|.+++||+|++++|..
T Consensus 439 --~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 439 --RPGQGLGLSVAREITEQYEGKISAGDSPLGGARMEVIFGRQ 479 (485)
T ss_pred --CCCcchhHHHHHHHHHHcCCEEEEEECCCCEEEEEEEEcCC
Confidence 35999999999999999999999999999999999999875
No 19
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.97 E-value=2.8e-29 Score=296.31 Aligned_cols=236 Identities=25% Similarity=0.421 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001941 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (993)
Q Consensus 421 ~~~~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skies 500 (993)
+.++++..+.+...+.+.+|++.+|||+||||+.+.+.++.+.+.... ...+.+..+....+++..++++++++++.+.
T Consensus 224 ~~~n~m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~~-~~~~~l~~~~~~~~~l~~li~~l~~l~~~~~ 302 (466)
T PRK10549 224 QDFNQLASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVRK-FTPESVASLQAEVGTLTKLVDDLHQLSLSDE 302 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344455556666677788999999999999999999999998765332 2345678888889999999999999999999
Q ss_pred CCcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccC-CeEEEEEEE
Q 001941 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYL 579 (993)
Q Consensus 501 g~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~v~~ 579 (993)
+...+...++++.+++++++..+......+++++.+++++.. .+.+|+..+.|++.||++||+||++. |.|.|.+..
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~--~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~~ 380 (466)
T PRK10549 303 GALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSA--TVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQ 380 (466)
T ss_pred CCcccccCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCCCc--EEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 999999999999999999999999998899999988876543 46789999999999999999999865 566665532
Q ss_pred eecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCC
Q 001941 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659 (993)
Q Consensus 580 ~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFep 659 (993)
. ...+.|+|+|+|+|||++.++++|+|
T Consensus 381 ~-----------------------------------------------------~~~~~i~V~D~G~Gi~~e~~~~lf~~ 407 (466)
T PRK10549 381 R-----------------------------------------------------DKTLRLTFADSAPGVSDEQLQKLFER 407 (466)
T ss_pred c-----------------------------------------------------CCEEEEEEEecCCCcCHHHHHHhccC
Confidence 1 12468999999999999999999999
Q ss_pred ccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 660 F~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
||+.+.+..+..+|+||||+||+++++.|||++.++|.+++||+|++.+|+..
T Consensus 408 ~~~~~~~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~ 460 (466)
T PRK10549 408 FYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLER 460 (466)
T ss_pred cccCCCCcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEccCCC
Confidence 99988776667789999999999999999999999999999999999999854
No 20
>PRK10490 sensor protein KdpD; Provisional
Probab=99.97 E-value=3.2e-29 Score=316.33 Aligned_cols=222 Identities=22% Similarity=0.357 Sum_probs=187.2
Q ss_pred HHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEee
Q 001941 433 ADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL--DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 510 (993)
Q Consensus 433 a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l--~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~ 510 (993)
.++.+++|++.+||||||||++|.|+++++..... .....+.++.+.....++..++++++++++++++...++..++
T Consensus 660 ~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~~ 739 (895)
T PRK10490 660 REQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEWL 739 (895)
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccc
Confidence 34567899999999999999999999998864322 2233467888899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCC-eEEEEEEEeecccccchh
Q 001941 511 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEV 589 (993)
Q Consensus 511 dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~v~~~e~~~~~i~i 589 (993)
++.+++++++..+......+++.+. +++..+ .+.+|+.+|+||+.||++||+||++.| .|.|++...
T Consensus 740 ~L~eli~~~l~~l~~~~~~~~i~l~--~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~--------- 807 (895)
T PRK10490 740 TLEEVVGSALQMLEPGLSGHPINLS--LPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVE--------- 807 (895)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEE--cCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe---------
Confidence 9999999999999887777766654 455544 578999999999999999999999765 455554311
Q ss_pred hhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcC
Q 001941 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669 (993)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~ 669 (993)
...+.|+|.|+|+|||++.+++||+||++.+.. +
T Consensus 808 --------------------------------------------~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~--~ 841 (895)
T PRK10490 808 --------------------------------------------GERLQLDVWDNGPGIPPGQEQLIFDKFARGNKE--S 841 (895)
T ss_pred --------------------------------------------CCEEEEEEEECCCCCCHHHHHHhcCCCccCCCC--C
Confidence 124789999999999999999999999986543 3
Q ss_pred cCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 670 ~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
..+|+||||+|||++++.|||+|+++|.+++||+|+|++|+..
T Consensus 842 ~~~G~GLGL~Ivk~ive~hGG~I~v~s~~~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 842 AIPGVGLGLAICRAIVEVHGGTIWAENRPEGGACFRVTLPLET 884 (895)
T ss_pred CCCCccHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeECCC
Confidence 4469999999999999999999999999999999999999864
No 21
>PRK10364 sensor protein ZraS; Provisional
Probab=99.97 E-value=1.8e-28 Score=289.60 Aligned_cols=213 Identities=26% Similarity=0.431 Sum_probs=181.8
Q ss_pred HHHHhhccccHhhHhHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHH
Q 001941 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (993)
Q Consensus 436 aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l-~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ 514 (993)
+..+|.+.+|||+||||++|.|+++++.+... +.+.+++++.+....+++..++++++++++.. ..+..++++.+
T Consensus 236 ~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~----~~~~~~~~l~~ 311 (457)
T PRK10364 236 ALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPT----HLALQAVDLND 311 (457)
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCcceEecHHH
Confidence 45679999999999999999999999876433 34566788899999999999999999999843 34456789999
Q ss_pred HHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccc-CCeEEEEEEEeecccccchhhhhc
Q 001941 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETEL 593 (993)
Q Consensus 515 ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~-~G~I~v~v~~~e~~~~~i~i~~~~ 593 (993)
++++++..+...+.++++++.++.++..+ .+.+|+.++.|++.||++||+||+. .|.|.|++...
T Consensus 312 ~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~------------- 377 (457)
T PRK10364 312 LINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASES------------- 377 (457)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEe-------------
Confidence 99999999999999999999998876554 4678999999999999999999975 45666655321
Q ss_pred ccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCC
Q 001941 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (993)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~G 673 (993)
...+.|+|+|+|+|||++.++++|+||++. +.+|
T Consensus 378 ----------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~------k~~g 411 (457)
T PRK10364 378 ----------------------------------------GAGVKISVTDSGKGIAADQLEAIFTPYFTT------KAEG 411 (457)
T ss_pred ----------------------------------------CCeEEEEEEECCCCCCHHHHHHHhCccccC------CCCC
Confidence 113789999999999999999999999853 2468
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 674 tGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
+||||+|||++++.|||+|+++|.+++||+|++++|...
T Consensus 412 ~GlGL~iv~~~v~~~gG~i~i~s~~~~Gt~f~i~lP~~~ 450 (457)
T PRK10364 412 TGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPVNI 450 (457)
T ss_pred CcccHHHHHHHHHHCCCEEEEEeCCCCcEEEEEEecCCC
Confidence 999999999999999999999999999999999999853
No 22
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.97 E-value=2.1e-28 Score=279.31 Aligned_cols=226 Identities=19% Similarity=0.236 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001941 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 502 (993)
Q Consensus 423 ~~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~ 502 (993)
++++.++.++..+.+.+|++++||||||||++|.+.++++.+.... ..+.+....+++..++++++++++.+...
T Consensus 123 ~n~~~~~l~~~~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~~-----~~~~~~~~~~~l~~~i~~ll~~~r~~~~~ 197 (356)
T PRK10755 123 LNQLVSRLTSTLDQERLFTADVAHELRTPLAGIRLHLELLEKQHHI-----DVAPLIARLDQMMHTVEQLLQLARAGQSF 197 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHHHhccch-----hHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 3444445555555667899999999999999999999987654221 23344556778999999999999987766
Q ss_pred cceeeEeecH-HHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccC-CeEEEEEEEe
Q 001941 503 LELEAVSFNL-RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLV 580 (993)
Q Consensus 503 l~l~~~~~dL-~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~v~~~ 580 (993)
......++++ .+++..+...+......+++.+.+...+ .+..+.+|+..+++|+.||++||+||+++ |.|.|++...
T Consensus 198 ~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~ 276 (356)
T PRK10755 198 SSGHYQTVKLLEDVILPSQDELSEMLEQRQQTLLLPESA-ADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQE 276 (356)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHhCCeEEeccCC-CceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEc
Confidence 5555667788 8899998888888888888888764222 34568899999999999999999999965 4566554211
Q ss_pred ecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCc
Q 001941 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (993)
Q Consensus 581 e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (993)
...+.++|+|+|+||+++..+++|+||
T Consensus 277 -----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f 303 (356)
T PRK10755 277 -----------------------------------------------------DGGAVLAVEDEGPGIDESKCGELSKAF 303 (356)
T ss_pred -----------------------------------------------------CCEEEEEEEECCCCCCHHHHHHhCCCe
Confidence 123689999999999999999999999
Q ss_pred cccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC-CeEEEEEEEEeC
Q 001941 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAVFG 711 (993)
Q Consensus 661 ~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g-~GStF~~~lp~~ 711 (993)
++.+. ..+|+||||+||+++++.|||+|+++|.++ +||+|++.+|..
T Consensus 304 ~~~~~----~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~ 351 (356)
T PRK10755 304 VRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLPKA 351 (356)
T ss_pred EeCCC----CCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEecCC
Confidence 97642 356999999999999999999999999998 999999999864
No 23
>PRK09835 sensor kinase CusS; Provisional
Probab=99.97 E-value=4.8e-28 Score=286.83 Aligned_cols=232 Identities=26% Similarity=0.425 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001941 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (993)
Q Consensus 422 ~~~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l-~~~q~~~l~~i~~s~~~L~~lIndlLd~skies 500 (993)
.++++.++.++....+.+|++.+|||||||++.+.+.++.+..... ..+..+.+..+.....++..++++++++++.+.
T Consensus 247 ~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~~ 326 (482)
T PRK09835 247 SFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADN 326 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555666666677899999999999999999999988765433 234456677777888999999999999999999
Q ss_pred CCcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCC-eEEEEEEE
Q 001941 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYL 579 (993)
Q Consensus 501 g~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~v~~ 579 (993)
+.......++++.++++++...+...+.++++.+.+..+ +..+.+|+..+++|+.||++||+||++.| .|.|++..
T Consensus 327 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~~ 403 (482)
T PRK09835 327 NQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELRFVGD---PCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQE 403 (482)
T ss_pred CCCCCCceeecHHHHHHHHHHHHHHHHhhCCEEEEEeCC---CcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEE
Confidence 988888889999999999999999888889888876532 34678999999999999999999999765 46665532
Q ss_pred eecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCC
Q 001941 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659 (993)
Q Consensus 580 ~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFep 659 (993)
.+ ..+.++|+|+|+|||++.++++|+|
T Consensus 404 ~~-----------------------------------------------------~~~~i~v~d~G~gi~~~~~~~if~~ 430 (482)
T PRK09835 404 VD-----------------------------------------------------HQVQLVVENPGTPIAPEHLPRLFDR 430 (482)
T ss_pred eC-----------------------------------------------------CEEEEEEEECCCCcCHHHHHHHhCC
Confidence 11 1367999999999999999999999
Q ss_pred ccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 001941 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (993)
Q Consensus 660 F~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~ 710 (993)
||+.+.+.++..+|+||||+||+++++.|||+|+++|.+ +|++|++++|.
T Consensus 431 f~~~~~~~~~~~~g~GlGL~i~~~i~~~~~g~i~~~s~~-~g~~~~i~lP~ 480 (482)
T PRK09835 431 FYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDA-RGTRFVISLPR 480 (482)
T ss_pred cccCCCCCCCCCCCcchHHHHHHHHHHHCCCEEEEEECC-CcEEEEEEeeC
Confidence 999987766667899999999999999999999999974 69999999985
No 24
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.97 E-value=3.3e-28 Score=285.59 Aligned_cols=230 Identities=29% Similarity=0.447 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001941 422 GMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (993)
Q Consensus 422 ~~~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~-~~q~~~l~~i~~s~~~L~~lIndlLd~skies 500 (993)
.+.++.+++++......++.+.+||||||||+.+.+.++.+.....+ .+..++++.+.....++..++++++++++++.
T Consensus 226 ~~n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 305 (457)
T TIGR01386 226 SFNAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARADN 305 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444455555556667899999999999999999999987654433 33456788888888999999999999999999
Q ss_pred CCcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccC-CeEEEEEEE
Q 001941 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYL 579 (993)
Q Consensus 501 g~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~v~~ 579 (993)
........++++.++++++++.+...+..+++++.+.. . ..+.+|+..+.+++.||+.||+||++. |.|.|.+..
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~~ 381 (457)
T TIGR01386 306 GQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVEG--E--GLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIER 381 (457)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHHHhCCeEEEecC--C--ceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEEe
Confidence 98888888999999999999999888888998776543 2 457899999999999999999999965 566665532
Q ss_pred eecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCC
Q 001941 580 VEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTP 659 (993)
Q Consensus 580 ~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFep 659 (993)
. ...+.|+|+|+|+|||++.++++|+|
T Consensus 382 ~-----------------------------------------------------~~~~~i~v~D~G~g~~~~~~~~~~~~ 408 (457)
T TIGR01386 382 R-----------------------------------------------------SDEVRVSVSNPGPGIPPEHLSRLFDR 408 (457)
T ss_pred c-----------------------------------------------------CCEEEEEEEeCCCCCCHHHHHHhccc
Confidence 1 12468999999999999999999999
Q ss_pred ccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEE
Q 001941 660 FMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709 (993)
Q Consensus 660 F~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp 709 (993)
||+.+.+.++..+|+||||+||+++++.|||+|.+.+ +++|++|++++|
T Consensus 409 ~~~~~~~~~~~~~g~GlGL~i~~~~~~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 409 FYRVDPARSNSGEGTGLGLAIVRSIMEAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred cccCCcccCCCCCCccccHHHHHHHHHHCCCEEEEEe-CCCceEEEEecC
Confidence 9999887766778999999999999999999999999 999999999987
No 25
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.97 E-value=4.3e-28 Score=299.46 Aligned_cols=229 Identities=20% Similarity=0.314 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 001941 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504 (993)
Q Consensus 425 el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~ 504 (993)
++..+.++......+|.+.+|||+||||+.|.+.++.+.....+.+..++++.+..+.+++..++++++++++++.+...
T Consensus 473 ~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~~~~~ 552 (703)
T TIGR03785 473 QMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMSEATRLEQAIQS 552 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 33445555566677899999999999999999999998877777777889999999999999999999999999988777
Q ss_pred eeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccC-CeEEEEEEEeecc
Q 001941 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEV 583 (993)
Q Consensus 505 l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~v~~~e~~ 583 (993)
.+..++|+.+++++++..+......+++.+.+.. . +..+.+|+..|.|++.||++||+||++. |.|.|++...
T Consensus 553 ~~~~~~dl~~ll~~~i~~~~~~~~~~~i~l~i~~--~-~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~~~--- 626 (703)
T TIGR03785 553 AEVEDFDLSEVLSGCMQGYQMTYPPQRFELNIPE--T-PLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQN--- 626 (703)
T ss_pred ccceeecHHHHHHHHHHHHHHHhhcCCEEEEecC--C-CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEEEc---
Confidence 8888999999999999999988888777766543 2 2368899999999999999999999965 4455544211
Q ss_pred cccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCcccc
Q 001941 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663 (993)
Q Consensus 584 ~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~ 663 (993)
...+.|+|+|+|+|||++.+++||+||++.
T Consensus 627 --------------------------------------------------~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~ 656 (703)
T TIGR03785 627 --------------------------------------------------KSHALLTVSNEGPPLPEDMGEQLFDSMVSV 656 (703)
T ss_pred --------------------------------------------------CCEEEEEEEEcCCCCCHHHHHHHhCCCeec
Confidence 124679999999999999999999999987
Q ss_pred CCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC-CeEEEEEEEE
Q 001941 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAV 709 (993)
Q Consensus 664 ~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g-~GStF~~~lp 709 (993)
+...+...+|+||||+|||++++.|||+|.++|.++ +|++|++++|
T Consensus 657 ~~~~~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 657 RDQGAQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 655555556899999999999999999999999976 8999999987
No 26
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.97 E-value=4.3e-26 Score=260.89 Aligned_cols=212 Identities=23% Similarity=0.414 Sum_probs=181.3
Q ss_pred HHHhhccccHhhHhHHHHHHHHHH---HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHH
Q 001941 437 KSQFLATVSHEIRTPMNGVLGMLD---MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 513 (993)
Q Consensus 437 Ks~Fla~vSHELRTPL~~I~g~le---lL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~ 513 (993)
..|+.+.+||||++||++|.++++ .|.+....++..+.++.|..-.++|-.+..++-.|++--... ..++.+.
T Consensus 384 LGQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l~ 459 (603)
T COG4191 384 LGQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSLR 459 (603)
T ss_pred HHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccHH
Confidence 468999999999999999999876 466666777788899999999999999999999998854443 4578999
Q ss_pred HHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccc---CCeEEEEEEEeecccccchhh
Q 001941 514 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE---KGHIFVTVYLVEEVVDSIEVE 590 (993)
Q Consensus 514 ~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~---~G~I~v~v~~~e~~~~~i~i~ 590 (993)
+.|++++.++....+..+..+....++. |..|.+|+.||+|||.|||.||++++. ++.|.|.+..
T Consensus 460 ~ai~~Al~ll~~R~~~~~~~l~~~~~~~-~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~----------- 527 (603)
T COG4191 460 EAIEGALELLRGRLRAAGVELELDLPDA-PLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQR----------- 527 (603)
T ss_pred HHHHHHHHHHHHhhhccCceeeccCCCC-CceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEe-----------
Confidence 9999999999999999999988877654 557999999999999999999999974 4555444321
Q ss_pred hhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCc
Q 001941 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 670 (993)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~ 670 (993)
+...+.++|.|||+||++|...++|+||+++++ .
T Consensus 528 ------------------------------------------~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~----~ 561 (603)
T COG4191 528 ------------------------------------------EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKP----V 561 (603)
T ss_pred ------------------------------------------cCCeEEEEEccCCCCCCHHHHHhhcCCccccCc----c
Confidence 123478999999999999999999999996542 3
Q ss_pred CCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 001941 671 HGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (993)
Q Consensus 671 ~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~ 710 (993)
..|.||||+||+.|++.|||+|.+.+.++.|+.|+++|+.
T Consensus 562 ~~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~~ 601 (603)
T COG4191 562 GKGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELRR 601 (603)
T ss_pred cCCcchhHHHHHHHHHHhCCeEEeecCCCCceEEEEEeec
Confidence 5699999999999999999999999999999999999974
No 27
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.96 E-value=1.4e-27 Score=281.11 Aligned_cols=231 Identities=23% Similarity=0.386 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001941 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 502 (993)
Q Consensus 423 ~~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~ 502 (993)
++.+.++.++....+.+|++.+|||+||||+.+.+..+++.....+. ..+..+....+++..++++++++++.+...
T Consensus 229 ~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~ 305 (461)
T PRK09470 229 FNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDLLVLSRNQQKN 305 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34445556666667778999999999999999999998876543322 246677888999999999999999987653
Q ss_pred cceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeec
Q 001941 503 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEE 582 (993)
Q Consensus 503 l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~ 582 (993)
.+....+++.+++++++..+...+..+++.+.+...+. +..+.+|+..+.+++.||++||+||++ +.|.|++...+
T Consensus 306 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i~i~~~~~~- 381 (461)
T PRK09470 306 -HLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPG-PWPINGNPNALASALENIVRNALRYSH-TKIEVAFSVDK- 381 (461)
T ss_pred -ccccceecHHHHHHHHHHHHHHHHHHCCCeEEEecCCc-ceEEEECHHHHHHHHHHHHHHHHHhCC-CcEEEEEEEEC-
Confidence 56677899999999999988877888888888774333 446889999999999999999999986 55666553211
Q ss_pred ccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccc
Q 001941 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662 (993)
Q Consensus 583 ~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q 662 (993)
..+.++|+|+|+||+++.++++|+|||+
T Consensus 382 ----------------------------------------------------~~~~i~V~D~G~Gi~~~~~~~if~~~~~ 409 (461)
T PRK09470 382 ----------------------------------------------------DGLTITVDDDGPGVPEEEREQIFRPFYR 409 (461)
T ss_pred ----------------------------------------------------CEEEEEEEECCCCCCHHHHHHhcCCCcc
Confidence 1367999999999999999999999999
Q ss_pred cCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 663 ~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
.+...++..+|+||||+||+++++.|||++.+.|.+++||+|++++|+..
T Consensus 410 ~~~~~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~~~Gt~~~i~lp~~~ 459 (461)
T PRK09470 410 VDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPLYK 459 (461)
T ss_pred CCcccCCCCCCcchhHHHHHHHHHHCCCEEEEEECCCCeEEEEEEeeCCC
Confidence 88777777789999999999999999999999999999999999999853
No 28
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-28 Score=260.92 Aligned_cols=222 Identities=23% Similarity=0.393 Sum_probs=180.9
Q ss_pred HHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHH
Q 001941 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (993)
Q Consensus 435 ~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ 514 (993)
++-..+..+++|||||||.||.|.+++|.....++..++|.+.|.+.+++|.+|++.+.-++- ....+..++|+++
T Consensus 130 ~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~----~rp~~r~~~NIH~ 205 (363)
T COG3852 130 RAVKGLVRGLAHEIKNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGP----QRPGDRVPVNIHE 205 (363)
T ss_pred HHHHHHHHHHHHHhcCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCcccccchHHH
Confidence 345678899999999999999999999988777777899999999999999999998855543 3344556899999
Q ss_pred HHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccc---C--CeEEEEEEEeecccccchh
Q 001941 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE---K--GHIFVTVYLVEEVVDSIEV 589 (993)
Q Consensus 515 ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~---~--G~I~v~v~~~e~~~~~i~i 589 (993)
+++.|..+....+ ..++.+.-+.++.+|. +.+|+++|.|++.||+.||.++.. . |.|+++.+..-. +
T Consensus 206 VLerV~~lv~~e~-~~~i~l~rdYDPSLP~-v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q------~ 277 (363)
T COG3852 206 VLERVRALVEAEF-ADNVRLIRDYDPSLPE-VLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQ------L 277 (363)
T ss_pred HHHHHHHHHhccc-CCceEEeecCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceE------E
Confidence 9999998876543 4578888899999986 679999999999999999999964 3 777665432110 0
Q ss_pred hhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcC
Q 001941 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669 (993)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~ 669 (993)
.+ . ...+...+.++|.|||+|||++.++++|.||.. .
T Consensus 278 ~i--------------~-----------------------g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs------~ 314 (363)
T COG3852 278 TI--------------A-----------------------GTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVS------G 314 (363)
T ss_pred Ec--------------c-----------------------CceeEeeeeeEEecCCCCCChHHhhhccccccc------c
Confidence 00 0 011233467899999999999999999999984 3
Q ss_pred cCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 670 ~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
+.+||||||+|+++++..|||.|.|+|.|| .|+|++.+|..+
T Consensus 315 r~~GsGLGLala~~li~qH~G~Ie~~S~Pg-~T~FrvllP~~~ 356 (363)
T COG3852 315 REGGTGLGLALAQNLIDQHGGKIEFDSWPG-RTVFRVLLPIRK 356 (363)
T ss_pred CCCCccccHHHHHHHHHhcCCEEEEeccCC-ceEEEEEeeccc
Confidence 557999999999999999999999999997 699999999865
No 29
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.96 E-value=1.6e-28 Score=279.19 Aligned_cols=235 Identities=25% Similarity=0.406 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001941 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDT---ELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497 (993)
Q Consensus 421 ~~~~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~---~l~~~q~~~l~~i~~s~~~L~~lIndlLd~sk 497 (993)
.++.++...+|+.+....+|...+||++|+||+.|.+++++|+.. .++.+.++++..+.+....+.++|++++.+++
T Consensus 508 eela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~ 587 (750)
T COG4251 508 EELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSK 587 (750)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345556667788888889999999999999999999999999764 56788899999999999999999999999999
Q ss_pred hhcCCcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEE
Q 001941 498 VESGKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTV 577 (993)
Q Consensus 498 iesg~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v 577 (993)
+......+. +.|+.+++++++........+.++++.+. + .| .+.+|+.++.|++.||+.||+||..++.-.+.|
T Consensus 588 l~~~~~~l~--~td~~~vv~~vl~~l~~ri~dtgaei~i~--~-lp-~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I 661 (750)
T COG4251 588 LGLTEAPLQ--PTDVQKVVDKVLLELSQRIADTGAEIRIA--P-LP-VVAADATQLGQVFQNLIANAIKFGGPENPDIEI 661 (750)
T ss_pred hccccCCCC--CcchHHHHHHHHHhcccccccccceEEec--c-cc-eeecCHHHHHHHHHHHHhhheecCCCCCCceEE
Confidence 977666554 67999999999999999999999988763 3 55 578999999999999999999998655323333
Q ss_pred EEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhcc
Q 001941 578 YLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIF 657 (993)
Q Consensus 578 ~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IF 657 (993)
.... ....+.++|.|+|+||.+...++||
T Consensus 662 ~~~r---------------------------------------------------~ed~~t~sV~dng~Gi~~a~~~riF 690 (750)
T COG4251 662 SAER---------------------------------------------------QEDEWTFSVRDNGIGIDPAYFERIF 690 (750)
T ss_pred eeec---------------------------------------------------cCCceEEEecCCCCCcCHHHHHHHH
Confidence 2110 0123679999999999999999999
Q ss_pred CCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCC
Q 001941 658 TPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714 (993)
Q Consensus 658 epF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~~ 714 (993)
..|-+..+ ..++.|||+||+|||+|++.|+|+|+++|.+|+|+||.|++|....+
T Consensus 691 ~iFqRl~s--~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~~~e 745 (750)
T COG4251 691 VIFQRLHS--RDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVGGEE 745 (750)
T ss_pred HHHHhcCc--hhhhcCCCccHHHHHHHHHHhCceEEEeecCCCceeEEEEeecCCcC
Confidence 99987643 45678999999999999999999999999999999999999987543
No 30
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.96 E-value=2.3e-27 Score=277.74 Aligned_cols=222 Identities=21% Similarity=0.314 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001941 421 HGMMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (993)
Q Consensus 421 ~~~~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skies 500 (993)
+.++++.++.++..+.+..|++++||||||||+.|.+.++++.+. .....+.+....+++..++++++++.+.+.
T Consensus 213 ~~~n~m~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l~~~r~~~ 287 (435)
T PRK09467 213 RAFNQMAAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFIDYLRTGQ 287 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 445555666777778889999999999999999999988876432 233456678888999999999999998765
Q ss_pred CCcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEe
Q 001941 501 GKLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLV 580 (993)
Q Consensus 501 g~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~ 580 (993)
. ....++++.+++++++..+. ..+..+.+.+++. +..+.+|+..+++++.||++||+||+ .|.|.|++...
T Consensus 288 ~---~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~-~~~i~i~~~~~ 358 (435)
T PRK09467 288 E---MPMEMADLNALLGEVIAAES----GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG-NGWIKVSSGTE 358 (435)
T ss_pred C---CCccccCHHHHHHHHHHHhh----hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC-CCeEEEEEEec
Confidence 3 24567899999999987654 3344555555443 34688999999999999999999998 56676655321
Q ss_pred ecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCc
Q 001941 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (993)
Q Consensus 581 e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (993)
...+.|+|+|+|+||+++..+++|+||
T Consensus 359 -----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~~~~~f 385 (435)
T PRK09467 359 -----------------------------------------------------GKRAWFQVEDDGPGIPPEQLKHLFQPF 385 (435)
T ss_pred -----------------------------------------------------CCEEEEEEEecCCCcCHHHHHHhcCCc
Confidence 113679999999999999999999999
Q ss_pred cccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 001941 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (993)
Q Consensus 661 ~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~ 711 (993)
++.+.+ +..+|+||||+||+++++.|||++.+.|.+++|++|++++|+.
T Consensus 386 ~~~~~~--~~~~g~GlGL~iv~~i~~~~~g~l~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 386 TRGDSA--RGSSGTGLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred ccCCCC--CCCCCeehhHHHHHHHHHHCCCEEEEEECCCCcEEEEEEEeCC
Confidence 997654 3347999999999999999999999999999999999999974
No 31
>PRK10337 sensor protein QseC; Provisional
Probab=99.96 E-value=3.8e-27 Score=277.12 Aligned_cols=225 Identities=20% Similarity=0.315 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001941 423 MMELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV-TQQDYVRTAQASGKALVSLINEVLDQAKVESG 501 (993)
Q Consensus 423 ~~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~-~q~~~l~~i~~s~~~L~~lIndlLd~skiesg 501 (993)
++.+..+.++......+|++.+|||+|||++.+.+.++.+.....++ ...++++.+...++++..++++++++++++.+
T Consensus 223 ~n~~~~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~~ 302 (449)
T PRK10337 223 LNQLFARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDSL 302 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33444455555555678999999999999999999988776543333 34578889999999999999999999999887
Q ss_pred CcceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCC-eEEEEEEEe
Q 001941 502 KLELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLV 580 (993)
Q Consensus 502 ~l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~v~~~ 580 (993)
.......++++.+++++++..+...+..+++++.+..++. +..+.+|+..+.+++.||++||+||+++| .|.+++..
T Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~~- 380 (449)
T PRK10337 303 DNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLTLNAH-PVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLNA- 380 (449)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHHHHHHcCCEEEEecCCC-CceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEe-
Confidence 7666777899999999999999888899999999887654 34568999999999999999999999764 44443310
Q ss_pred ecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCc
Q 001941 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (993)
Q Consensus 581 e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (993)
..++|+|+|+|||++.++++|+||
T Consensus 381 --------------------------------------------------------~~i~i~D~G~Gi~~~~~~~if~~f 404 (449)
T PRK10337 381 --------------------------------------------------------RNFTVRDNGPGVTPEALARIGERF 404 (449)
T ss_pred --------------------------------------------------------eEEEEEECCCCCCHHHHHHhcccc
Confidence 148999999999999999999999
Q ss_pred cccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEE
Q 001941 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708 (993)
Q Consensus 661 ~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~l 708 (993)
|+.+. +..+|+||||+||++++++|||+|.++|.+++|++|++++
T Consensus 405 ~~~~~---~~~~g~GlGL~iv~~i~~~~gg~l~~~s~~~~G~~~~i~~ 449 (449)
T PRK10337 405 YRPPG---QEATGSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVSW 449 (449)
T ss_pred cCCCC---CCCCccchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEeC
Confidence 98543 2446999999999999999999999999999999998863
No 32
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.96 E-value=1.5e-27 Score=266.95 Aligned_cols=218 Identities=32% Similarity=0.427 Sum_probs=188.5
Q ss_pred HHHHhhccccHhhHhHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHH
Q 001941 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 513 (993)
Q Consensus 436 aKs~Fla~vSHELRTPL~~I~g~lelL~~~--~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~ 513 (993)
.+.+|++.++|||||||++|.++++++... ..++...++++.+...++++..++++++++++++.+.......++++.
T Consensus 113 ~~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~ 192 (333)
T TIGR02966 113 MRRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMP 192 (333)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHH
Confidence 345699999999999999999999988654 344556788999999999999999999999999998888888899999
Q ss_pred HHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccC-CeEEEEEEEeecccccchhhhh
Q 001941 514 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETE 592 (993)
Q Consensus 514 ~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~v~~~e~~~~~i~i~~~ 592 (993)
++++.+...+......+++.+.+.++. +..+.+|+..|.+|+.||++||+||++. +.|.|++...
T Consensus 193 ~~i~~~~~~~~~~~~~~~i~i~~~~~~--~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~------------ 258 (333)
T TIGR02966 193 ALLDHLRDEAEALSQGKNHQITFEIDG--GVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRD------------ 258 (333)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEcCCC--CceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEc------------
Confidence 999999999999999999999887732 3467899999999999999999999864 4555544211
Q ss_pred cccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCC
Q 001941 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (993)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~ 672 (993)
...+.+.|.|+|+|||++.++++|+||++.+...+...+
T Consensus 259 -----------------------------------------~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~ 297 (333)
T TIGR02966 259 -----------------------------------------GGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTG 297 (333)
T ss_pred -----------------------------------------CCEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCC
Confidence 113679999999999999999999999987766566678
Q ss_pred CccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEE
Q 001941 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708 (993)
Q Consensus 673 GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~l 708 (993)
|+||||++|+.+++.|||+|.+.|.+++||+|++++
T Consensus 298 g~glGL~~~~~~~~~~gG~i~~~s~~~~Gt~~~i~l 333 (333)
T TIGR02966 298 GTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 333 (333)
T ss_pred CCcccHHHHHHHHHHCCCEEEEEecCCCCeEEEEEC
Confidence 999999999999999999999999999999999974
No 33
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.95 E-value=4.1e-26 Score=269.04 Aligned_cols=218 Identities=25% Similarity=0.395 Sum_probs=189.7
Q ss_pred HHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHHH
Q 001941 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAIL 516 (993)
Q Consensus 437 Ks~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ll 516 (993)
..+|++.++||+|||++.+.+.++++.+....+...++++.+....+++..++++++++++++.........++++.+++
T Consensus 256 ~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (475)
T PRK11100 256 VEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLLELARLEQRQELEVLEPVALAALL 335 (475)
T ss_pred HHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccceeccHHHHH
Confidence 45789999999999999999999998875555667789999999999999999999999999988777778899999999
Q ss_pred HHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccC-CeEEEEEEEeecccccchhhhhccc
Q 001941 517 DDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSS 595 (993)
Q Consensus 517 ~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~v~~~e~~~~~i~i~~~~~~ 595 (993)
+++...+...+..+++.+.+..+ +..+.+|...+.+++.||+.||+||+.+ |.|.|++...
T Consensus 336 ~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~~--------------- 397 (475)
T PRK11100 336 EELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVD--------------- 397 (475)
T ss_pred HHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc---------------
Confidence 99999999999999999888765 3467889999999999999999999854 6676665321
Q ss_pred ccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCcc
Q 001941 596 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675 (993)
Q Consensus 596 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtG 675 (993)
...+.++|+|+|+|||++.++++|+||++.+.. ....+|+|
T Consensus 398 --------------------------------------~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~-~~~~~~~G 438 (475)
T PRK11100 398 --------------------------------------GEQVALSVEDQGPGIPDYALPRIFERFYSLPRP-ANGRKSTG 438 (475)
T ss_pred --------------------------------------CCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC-CCCCCCcc
Confidence 124789999999999999999999999976432 23457999
Q ss_pred chHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 001941 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (993)
Q Consensus 676 LGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~ 711 (993)
|||+||+++++.|||+|.++|.+++||+|.+.+|..
T Consensus 439 lGL~i~~~~~~~~~G~i~i~s~~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 439 LGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPRH 474 (475)
T ss_pred hhHHHHHHHHHHCCCEEEEEEcCCCeEEEEEEeeCC
Confidence 999999999999999999999999999999999863
No 34
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.95 E-value=1.6e-26 Score=262.44 Aligned_cols=217 Identities=24% Similarity=0.440 Sum_probs=171.8
Q ss_pred HHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHH
Q 001941 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (993)
Q Consensus 436 aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~l 515 (993)
+..+|++.+|||+||||++|.|+++++.+...++..+++++.+..+++++..++++++++.+... ..+.++..+
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~------~~~~~l~~~ 202 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HVTESIHKV 202 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CccccHHHH
Confidence 45789999999999999999999999887666667788999999999999999999998765432 245789999
Q ss_pred HHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcc--cCCeEEEEEEEeecccccchhhhhc
Q 001941 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT--EKGHIFVTVYLVEEVVDSIEVETEL 593 (993)
Q Consensus 516 l~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT--~~G~I~v~v~~~e~~~~~i~i~~~~ 593 (993)
++.+...+.... .+++.+.+..++..+ .+.+|+.++.||+.||++||+||+ +.|.|.+++....... +
T Consensus 203 ~~~~~~~~~~~~-~~~i~i~~~~~~~~~-~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~----~---- 272 (348)
T PRK11073 203 AERVVQLVSLEL-PDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT----L---- 272 (348)
T ss_pred HHHHHHHHhhhc-cCCcEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc----c----
Confidence 998888776544 457778777766555 477899999999999999999997 3455554432110000 0
Q ss_pred ccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCC
Q 001941 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (993)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~G 673 (993)
........+.+.|.|+|+|||++.++++|+||++. +.+|
T Consensus 273 -----------------------------------~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~------~~~g 311 (348)
T PRK11073 273 -----------------------------------HGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSG------REGG 311 (348)
T ss_pred -----------------------------------CCccCCceEEEEEEeCCCCCCHHHHhhccCCcccC------CCCC
Confidence 00001123579999999999999999999999853 2469
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 001941 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (993)
Q Consensus 674 tGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~ 710 (993)
+||||+|||++++.|||+|+++|.+|+ |+|++++|+
T Consensus 312 ~GlGL~i~~~iv~~~gG~i~~~s~~~~-~~f~i~lP~ 347 (348)
T PRK11073 312 TGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 347 (348)
T ss_pred ccCCHHHHHHHHHHcCCeEEEEecCCc-eEEEEEEec
Confidence 999999999999999999999999885 999999996
No 35
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.94 E-value=5e-25 Score=243.72 Aligned_cols=217 Identities=39% Similarity=0.666 Sum_probs=182.0
Q ss_pred HHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-cceeeEeecHHH
Q 001941 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK-LELEAVSFNLRA 514 (993)
Q Consensus 436 aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~-l~l~~~~~dL~~ 514 (993)
.+..|++.++||+|||++.+.+.++++.....+ .+.+++..+...++++..++++++++++.+.+. ........++..
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 192 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEGLLD-PQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAE 192 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHH
Confidence 478899999999999999999988865544222 267788888889999999999999999998863 333456678999
Q ss_pred HHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchhhhhcc
Q 001941 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594 (993)
Q Consensus 515 ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i~~~~~ 594 (993)
+++++...+......+.+.+....+ .+..+.+|+.+++|++.||++||+||++.|.|.|.+....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~------------- 257 (336)
T COG0642 193 LLEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQDD------------- 257 (336)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEecC-------------
Confidence 9999999998888888888876554 2446788999999999999999999998677776653211
Q ss_pred cccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCc
Q 001941 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674 (993)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~Gt 674 (993)
..+.++|.|+|+||+++.++++|+||++.+...+ |+
T Consensus 258 ----------------------------------------~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~----g~ 293 (336)
T COG0642 258 ----------------------------------------EQVTISVEDTGPGIPEEELERIFEPFFRTDKSRS----GT 293 (336)
T ss_pred ----------------------------------------CeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCC----CC
Confidence 0478999999999999999999999998755322 99
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 675 GLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
||||+|||++++.|||+|.++|.++.||+|++++|...
T Consensus 294 GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~ 331 (336)
T COG0642 294 GLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAP 331 (336)
T ss_pred CccHHHHHHHHHHcCCEEEEEecCCCceEEEEEEeccc
Confidence 99999999999999999999999999999999999864
No 36
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.94 E-value=8.4e-25 Score=264.50 Aligned_cols=214 Identities=26% Similarity=0.487 Sum_probs=183.3
Q ss_pred HHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHH
Q 001941 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (993)
Q Consensus 436 aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~l 515 (993)
+..+|++.++||+||||+.|.++++++.+...+....++++.+....+++..++++++++++.+... ..++++..+
T Consensus 389 ~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~ 464 (607)
T PRK11360 389 ALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRESQ----WQPVSLNAL 464 (607)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCc----cceecHHHH
Confidence 4568999999999999999999999987765566778899999999999999999999999876443 357899999
Q ss_pred HHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccc-CCeEEEEEEEeecccccchhhhhcc
Q 001941 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETELS 594 (993)
Q Consensus 516 l~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~-~G~I~v~v~~~e~~~~~i~i~~~~~ 594 (993)
++++...+......+++.+.+.+++..+ .+.+|+..|.|++.||+.||+||+. .|.|.|++...+
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~------------- 530 (607)
T PRK11360 465 VEEVLQLFQTAGVQARVDFETELDNELP-PIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYS------------- 530 (607)
T ss_pred HHHHHHHHHHhhhccCcEEEEEcCCCCC-eEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcC-------------
Confidence 9999999988878889998888776655 4678999999999999999999975 456666543210
Q ss_pred cccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCc
Q 001941 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674 (993)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~Gt 674 (993)
...+.|+|+|+|+|||++.++++|+||++.+ .+|+
T Consensus 531 ---------------------------------------~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~------~~g~ 565 (607)
T PRK11360 531 ---------------------------------------DGQVAVSIEDNGCGIDPELLKKIFDPFFTTK------AKGT 565 (607)
T ss_pred ---------------------------------------CCEEEEEEEeCCCCCCHHHHhhhcCCceeCC------CCCC
Confidence 0127899999999999999999999999643 3589
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 675 GLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
||||++|++++++|||+|+++|.+|+||+|++++|...
T Consensus 566 glGL~~~~~~~~~~~G~i~~~s~~~~Gt~~~i~lp~~~ 603 (607)
T PRK11360 566 GLGLALSQRIINAHGGDIEVESEPGVGTTFTLYLPINP 603 (607)
T ss_pred chhHHHHHHHHHHcCCEEEEEEcCCCceEEEEEecCCC
Confidence 99999999999999999999999999999999999854
No 37
>PF03924 CHASE: CHASE domain; InterPro: IPR006189 The CHASE domain is an extracellular domain of 200-230 amino acids, which is found in transmembrane receptors from bacteria, lower eukaryotes and plants. It has been named CHASE (Cyclases/Histidine kinases Associated Sensory Extracellular) because of its presence in diverse receptor-like proteins with histidine kinase and nucleotide cyclase domains. The CHASE domain always occurs N-terminally in extracellular or periplasmic locations, followed by an intracellular tail housing diverse enzymatic signalling domains such as histidine kinase (IPR005467 from INTERPRO), adenyl cyclase, GGDEF-type nucleotide cyclase and EAL-type phosphodiesterase domains, as well as non-enzymatic domains such PAS (IPR000014 from INTERPRO), GAF (IPR003018 from INTERPRO), phosphohistidine and response regulatory domains. The CHASE domain is predicted to bind diverse low molecular weight ligands, such as the cytokinin-like adenine derivatives or peptides, and mediate signal transduction through the respective receptors [, ]. The CHASE domain has a predicted alpha+beta fold, with two extended alpha helices on both boundaries and two central alpha helices separated by beta sheets. The termini are less conserved compared with the central part of the domain, which shows strongly conserved motifs.; PDB: 3T4L_B 3T4K_B 3T4S_B 3T4Q_A 3T4J_B 3T4T_B 3T4O_A.
Probab=99.93 E-value=1.4e-25 Score=234.51 Aligned_cols=186 Identities=30% Similarity=0.458 Sum_probs=138.9
Q ss_pred CCCCCHHHHHHHHhh--hhhcCCCcceeeeecccCchhHHHHHHHhcceeeecccCCCCCCCCCCCCCCCCccceeEe--
Q 001941 157 PSAIDQMTFTRYTER--TAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIF-- 232 (993)
Q Consensus 157 ~~~id~~~f~~~t~~--~~~~~p~i~~~~~~~~v~~~er~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~-- 232 (993)
++.|++++|..|++. ++.++|++.+++|+|+|.+++|++||+++....... ....|.+.+++|+||.|
T Consensus 2 s~~v~~~eF~~f~~~~~~~~~~~~i~~l~w~~~V~~~~r~~fe~~~~~~~~~~--------f~i~~~~~~~~~~pv~yi~ 73 (193)
T PF03924_consen 2 SEEVTREEFERFSRSLQLLQRHPGIQALAWAPRVPPEEREAFEAQLRAEGFPD--------FRIRPDGPRDEYFPVTYIE 73 (193)
T ss_dssp S----HHHHHHHHHH--TGGGSTTEEEEEEEE-EEGGGHHHHHHHHT--------------S--BTTS--SEE-BEEEE-
T ss_pred CCccCHHHHHHHHHHHhHhhhCchheEEEEeccCCHHHHHHHHHHHhhhcccc--------eEeeeCCCCCCceEEEEee
Confidence 578999999999999 999999999999999999999999999875332221 11123458999999955
Q ss_pred ecCCccceeeeccccCcccHHHHHHHHhcCCcccccceeecccC--CceeEEEEEeeccCCCCCCChHHHHHhhcceeee
Q 001941 233 AQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTN--RLGVILTFAVYKRELPSNATPNERIEATDGYLGG 310 (993)
Q Consensus 233 ~~~~~~~~~g~D~~s~~~~r~~i~~Ar~tg~~~~t~p~~l~~~~--~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~ 310 (993)
|...+..++|+|++|+|.+|++|.+|++||++++|+|++|++.+ +.|++++.|||..+.++..++++|...++||+.+
T Consensus 74 P~~~n~~~lG~Dl~s~p~~~~al~~A~~tg~~~~s~p~~L~~~~~~~~g~l~~~PVy~~~~~~~~~~~~r~~~~~G~v~~ 153 (193)
T PF03924_consen 74 PLEGNEAALGLDLASDPERREALERARDTGEPVASGPIRLVQGGDQQPGFLLFAPVYDRDGPPPSTPADRRRAFWGFVSA 153 (193)
T ss_dssp GGG--GGGBTBBGGGSHHHHHHHHHHHHHSS-EE--SEE-TTT----EEEEEEEEEE-TT--SS--HHHHHHTEEEEEEE
T ss_pred cchhHHhccCcCcCCCHHHHHHHHHHHHhCCeEEeccEEccCCCCcCcEEEEEeeeecCCCCCCCChhHhhhceeEEEEE
Confidence 66778999999999999999999999999999999999999865 6999999999977666777899999999999999
Q ss_pred eeehHHHHHHHHHhhcccceEEEEeecccCCCCceecccC
Q 001941 311 IFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPISMYGS 350 (993)
Q Consensus 311 ~~~v~~l~~~ll~~~~~~~~i~v~~yd~~~~~~~~~~y~~ 350 (993)
+|++++|++.++........+.+.+||.+....+..+|++
T Consensus 154 v~~~~~l~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ly~s 193 (193)
T PF03924_consen 154 VFRVDDLFESALSELSSEDGLDLRLYDGDSGSDPELLYQS 193 (193)
T ss_dssp EEEHHHHHHHHHHTSTTGGGEEEEEEE-SSTTS-EEEES-
T ss_pred EEEHHHHHHHHhhhccccCcEEEEEEECCCCCCCCcccCc
Confidence 9999999999987765446888999998777777777763
No 38
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.92 E-value=9.1e-24 Score=261.41 Aligned_cols=203 Identities=21% Similarity=0.319 Sum_probs=161.0
Q ss_pred HHHHhhccccHhhHhHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHH
Q 001941 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDV-TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (993)
Q Consensus 436 aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~-~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ 514 (993)
+.+++.+.++||||||++.+..+++...+...++ .++++++.+.++.+++.++++++.+.. ...+..++++.+
T Consensus 474 ~~~~~~a~i~HdLrn~l~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~~------~~~~~~~~~l~~ 547 (679)
T TIGR02916 474 AFNRMSAFVVHDLKNLVAQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSKG------LEEEKLCVDLVD 547 (679)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cccCCccccHHH
Confidence 3467888999999999999988888766544333 356778888888888888887764332 245566789999
Q ss_pred HHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccc-CCeEEEEEEEeecccccchhhhhc
Q 001941 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETEL 593 (993)
Q Consensus 515 ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~-~G~I~v~v~~~e~~~~~i~i~~~~ 593 (993)
+++++.+.+... ...+++ .++++ ..+.+|+..++||+.||++||+||++ +|.|.|++...
T Consensus 548 ll~~~~~~~~~~--~~~~~l--~~~~~--~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~------------- 608 (679)
T TIGR02916 548 LLRRAIASKRAQ--GPRPEV--SIDTD--LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVERE------------- 608 (679)
T ss_pred HHHHHHHHhhhh--cCCceE--EeCCC--ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEc-------------
Confidence 999998876543 233333 33333 46789999999999999999999985 46777665321
Q ss_pred ccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhh-HhhccCCccccCCCCcCcCC
Q 001941 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEA-QSRIFTPFMQVGPSISRTHG 672 (993)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~-~~~IFepF~q~~~s~s~~~~ 672 (993)
...+.|+|+|+|+|||++. ++++|+||++.+ .+
T Consensus 609 ----------------------------------------~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~------~~ 642 (679)
T TIGR02916 609 ----------------------------------------CGAARIEIEDSGCGMSPAFIRERLFKPFDTTK------GA 642 (679)
T ss_pred ----------------------------------------CCEEEEEEEEcCCCcChHHHHHhcCCCCCCCC------CC
Confidence 1246899999999999999 999999998642 26
Q ss_pred CccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEE
Q 001941 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709 (993)
Q Consensus 673 GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp 709 (993)
|+||||++||++++.|||+|.++|.+|+||+|++++|
T Consensus 643 G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 643 GMGIGVYECRQYVEEIGGRIEVESTPGQGTIFTLVLP 679 (679)
T ss_pred CcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEeC
Confidence 9999999999999999999999999999999999987
No 39
>PRK13560 hypothetical protein; Provisional
Probab=99.92 E-value=5.4e-24 Score=267.59 Aligned_cols=209 Identities=17% Similarity=0.180 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 001941 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504 (993)
Q Consensus 425 el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~ 504 (993)
+++++++++.++|++|+++|||||||||++|.|+++++.+...++....++.........+...++.++..
T Consensus 593 ~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------- 663 (807)
T PRK13560 593 HAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEAKCAFAESQDRICAMALAHEKLYQS--------- 663 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 34455666677899999999999999999999999998877666667777766666655555555444321
Q ss_pred eeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccC----CeEEEEEEEe
Q 001941 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLV 580 (993)
Q Consensus 505 l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~----G~I~v~v~~~ 580 (993)
....++++.++++++...+......+...+.+.++...+.....+...+.||+.||++||+||+.. |.|.|++...
T Consensus 664 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~ 743 (807)
T PRK13560 664 EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIREQ 743 (807)
T ss_pred ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEEEc
Confidence 133468999999999988877766666555555554443344456778899999999999999743 4555544210
Q ss_pred ecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCc
Q 001941 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (993)
Q Consensus 581 e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (993)
+...+.|+|+|||+|||++..
T Consensus 744 ----------------------------------------------------~~~~v~i~V~D~G~GI~~~~~------- 764 (807)
T PRK13560 744 ----------------------------------------------------GDGMVNLCVADDGIGLPAGFD------- 764 (807)
T ss_pred ----------------------------------------------------CCCEEEEEEEeCCCcCCcccc-------
Confidence 112478999999999998731
Q ss_pred cccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 661 ~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
...|+||||+|||+||++|||+|+++|. +||+|+|+||+.+
T Consensus 765 ---------~~~~~gLGLai~~~iv~~~gG~I~v~S~--~Gt~F~i~lP~~~ 805 (807)
T PRK13560 765 ---------FRAAETLGLQLVCALVKQLDGEIALDSR--GGARFNIRFPMSP 805 (807)
T ss_pred ---------ccccCCccHHHHHHHHHHcCCEEEEEcC--CceEEEEEecCCC
Confidence 1247789999999999999999999994 7999999999853
No 40
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.89 E-value=5.3e-22 Score=238.62 Aligned_cols=194 Identities=22% Similarity=0.323 Sum_probs=134.6
Q ss_pred HHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHHHH
Q 001941 438 SQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILD 517 (993)
Q Consensus 438 s~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ll~ 517 (993)
.++++.++||+||||++|.|++++... .+..+++..+. ......++++++..+ . .++.
T Consensus 340 ~~~l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~--~-------------~~~~ 397 (542)
T PRK11086 340 ADALRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILKTA---NNYQEEIGSLLGKIK--S-------------PVIA 397 (542)
T ss_pred HHHHHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHHHH---HHHHHHHHHHHHhcc--C-------------HHHH
Confidence 356677899999999999999886432 12233433221 222222333332211 0 1112
Q ss_pred HHHHHHhhhhhccCcEEEEEecCCCCceE-EeCHHHHHHHHHHHHHHHHhccc---CCeEEEEEEEeecccccchhhhhc
Q 001941 518 DVLSLFSGKSQDKGVELAVYISDRVPETL-IGDPGRFRQIITNLMGNSIKFTE---KGHIFVTVYLVEEVVDSIEVETEL 593 (993)
Q Consensus 518 ~vl~~~~~~a~~k~I~l~~~i~~~~p~~v-~gD~~rL~QIL~NLL~NAiKfT~---~G~I~v~v~~~e~~~~~i~i~~~~ 593 (993)
..+......+.++++.+.+..++..|... ..+...|.||+.||++||+||+. .|.|.+++...
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~------------- 464 (542)
T PRK11086 398 GFLLGKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYR------------- 464 (542)
T ss_pred HHHHHHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc-------------
Confidence 22222234567788888887765554321 12345799999999999999963 45555554311
Q ss_pred ccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCC
Q 001941 594 SSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG 673 (993)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~G 673 (993)
...+.|+|+|+|+|||++.++++|+||++. +.+|
T Consensus 465 ----------------------------------------~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~------~~~g 498 (542)
T PRK11086 465 ----------------------------------------NGWLHCEVSDDGPGIAPDEIDAIFDKGYST------KGSN 498 (542)
T ss_pred ----------------------------------------CCEEEEEEEECCCCCCHHHHHHHHhCCCcc------CCCC
Confidence 124679999999999999999999999853 3469
Q ss_pred ccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 674 TGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 674 tGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
+||||+|||++++.|||+|+++|.+|+||+|+|++|+..
T Consensus 499 ~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~lP~~~ 537 (542)
T PRK11086 499 RGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWDG 537 (542)
T ss_pred CcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeCCC
Confidence 999999999999999999999999999999999999864
No 41
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.88 E-value=7.2e-21 Score=226.67 Aligned_cols=195 Identities=11% Similarity=0.187 Sum_probs=151.0
Q ss_pred HHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecH
Q 001941 434 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 512 (993)
Q Consensus 434 ~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~-~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL 512 (993)
++.+.++.+.+.||++|||++|.+..+++.+...+ ++.++..+.+.+.+.++.+.++++++..+.. ...++++
T Consensus 299 e~~r~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~~------~l~~~~L 372 (495)
T PRK11644 299 ESVRRDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRPR------QLDDLTL 372 (495)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCc------ccccCCH
Confidence 34566788899999999999999999988664433 3345778888888999999999998765522 2345789
Q ss_pred HHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchhhhh
Q 001941 513 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592 (993)
Q Consensus 513 ~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i~~~ 592 (993)
.+.+++++..+.......++++....++ +....+|+..+.|++.|+++||+||++.|.|.+++...
T Consensus 373 ~~~l~~l~~~l~~~~~~~~v~l~~~~~~--~~l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~------------ 438 (495)
T PRK11644 373 EQAIRSLMREMELEDRGIVSHLDWRIDE--SALSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQ------------ 438 (495)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEecCCc--ccCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEc------------
Confidence 9999999988765544444444443332 22344678889999999999999999888777665321
Q ss_pred cccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCC
Q 001941 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (993)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~ 672 (993)
...+.++|+|+|+|||++. .
T Consensus 439 -----------------------------------------~~~i~l~V~DnG~Gi~~~~-------------------~ 458 (495)
T PRK11644 439 -----------------------------------------DERLMLVIEDDGSGLPPGS-------------------G 458 (495)
T ss_pred -----------------------------------------CCEEEEEEEECCCCCCcCC-------------------C
Confidence 1147899999999998651 3
Q ss_pred CccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 001941 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (993)
Q Consensus 673 GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~ 710 (993)
|+|+||+++|++++.|||+|+++| ++||+|++++|.
T Consensus 459 ~~GLGL~ivr~iv~~~GG~i~v~S--~~Gt~f~I~LP~ 494 (495)
T PRK11644 459 QQGFGLRGMRERVTALGGTLTISC--THGTRLSVSLPQ 494 (495)
T ss_pred CCCCcHHHHHHHHHHcCCEEEEEc--CCCEEEEEEEeC
Confidence 679999999999999999999999 889999999984
No 42
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.88 E-value=1.1e-21 Score=223.64 Aligned_cols=212 Identities=22% Similarity=0.339 Sum_probs=166.7
Q ss_pred HHHHHhhccccHhhHhHHHHHHHHHHHHhcC---CCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeE
Q 001941 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDT---ELDV---TQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV 508 (993)
Q Consensus 435 ~aKs~Fla~vSHELRTPL~~I~g~lelL~~~---~l~~---~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~ 508 (993)
.|-++-..-++|||||||+-|.-.++-|... ..++ .-+++.++|.+....+.+++++.-.|+|+-.- ..+
T Consensus 484 ~AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~p----~~e 559 (712)
T COG5000 484 AAWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPAP----KLE 559 (712)
T ss_pred HHHHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CCC
Confidence 3445555569999999999999999987532 2332 12568899999999999999999999997544 345
Q ss_pred eecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCC-----e-EEEEEEEeec
Q 001941 509 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-----H-IFVTVYLVEE 582 (993)
Q Consensus 509 ~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G-----~-I~v~v~~~e~ 582 (993)
+.||++++++++.++.. ....+.+..+.... |.....|+..+.|++.||+.||.++.+.- . -.++++.
T Consensus 560 ~~dL~~ll~e~~~L~e~--~~~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~--- 633 (712)
T COG5000 560 KSDLRALLKEVSFLYEI--GNDHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSL--- 633 (712)
T ss_pred cchHHHHHHHHHHHHhc--cCCCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEE---
Confidence 68999999999988753 34567788877766 77788899999999999999999986421 0 0011110
Q ss_pred ccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccc
Q 001941 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662 (993)
Q Consensus 583 ~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q 662 (993)
......+++.|.|||.|.|.+.+.++||||++
T Consensus 634 ------------------------------------------------~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvT 665 (712)
T COG5000 634 ------------------------------------------------DDADGRIVVDVIDNGKGFPRENRHRALEPYVT 665 (712)
T ss_pred ------------------------------------------------ecCCCeEEEEEecCCCCCChHHhhhhccCcee
Confidence 01123488999999999999999999999996
Q ss_pred cCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeC-CCeEEEEEEEEe
Q 001941 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP-NIGSTFTFTAVF 710 (993)
Q Consensus 663 ~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~-g~GStF~~~lp~ 710 (993)
. +.+||||||+|||+|+|.|||.|.+...| -.|....+.+|.
T Consensus 666 t------r~KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 666 T------REKGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred c------ccccccccHHHHHHHHHhcCCeEEecCCCCCCCcEEEEEccc
Confidence 4 34799999999999999999999999884 349999998886
No 43
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.87 E-value=5.4e-21 Score=230.78 Aligned_cols=197 Identities=21% Similarity=0.311 Sum_probs=140.8
Q ss_pred hhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHHHHHH
Q 001941 440 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 519 (993)
Q Consensus 440 Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ll~~v 519 (993)
.+..++||++|||++|.|++++- ...+..+.+...+..+..+++++....+ ...+...+
T Consensus 341 ~l~~~~he~~n~L~~i~g~l~~~-------~~~~~~~~i~~~s~~~~~l~~~l~~~~~--------------~~~~~~~l 399 (545)
T PRK15053 341 SLRTLRHEHLNWMSTLNGLLQMK-------EYDRVLEMVQGESQAQQQLIDSLREAFA--------------DRQVAGLL 399 (545)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHHHHHHHhcc--------------cHHHHHHH
Confidence 34568999999999999987752 1234556666677777777777665422 11122222
Q ss_pred HHHHhhhhhccCcEEEEEecCCCC-ceEEeCHHHHHHHHHHHHHHHHhcc---cCCeEEEEEEEeecccccchhhhhccc
Q 001941 520 LSLFSGKSQDKGVELAVYISDRVP-ETLIGDPGRFRQIITNLMGNSIKFT---EKGHIFVTVYLVEEVVDSIEVETELSS 595 (993)
Q Consensus 520 l~~~~~~a~~k~I~l~~~i~~~~p-~~v~gD~~rL~QIL~NLL~NAiKfT---~~G~I~v~v~~~e~~~~~i~i~~~~~~ 595 (993)
.. ....+.++++.+.+....... .....|+..|.||+.||++||+||. ++|...|.+....
T Consensus 400 ~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~-------------- 464 (545)
T PRK15053 400 FG-KVQRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSD-------------- 464 (545)
T ss_pred HH-HHHHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE--------------
Confidence 21 234466778887765433211 1235699999999999999999995 3332233332211
Q ss_pred ccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCcc
Q 001941 596 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675 (993)
Q Consensus 596 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtG 675 (993)
+...+.++|+|+|+|||++.++++|+|||+.+ ++..+|+|
T Consensus 465 -------------------------------------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk---~~~~~g~G 504 (545)
T PRK15053 465 -------------------------------------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTR---ADEPGEHG 504 (545)
T ss_pred -------------------------------------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCC---CCCCCCce
Confidence 11246899999999999999999999999743 33456899
Q ss_pred chHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 676 LGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
|||+|||++++.|||+|+++|.+|.||+|++++|...
T Consensus 505 lGL~ivk~iv~~~~G~i~v~s~~~~Gt~f~i~lP~~~ 541 (545)
T PRK15053 505 IGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIPKVK 541 (545)
T ss_pred eCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEECCCC
Confidence 9999999999999999999999999999999999753
No 44
>COG3614 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.87 E-value=1.4e-20 Score=200.74 Aligned_cols=229 Identities=16% Similarity=0.149 Sum_probs=179.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHhHHHHHHHHHhcccCCCCCCCCCHH
Q 001941 84 WWRKVLITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQM 163 (993)
Q Consensus 84 w~~~~~~~~~l~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~id~~ 163 (993)
|+++.-++.+++++++++.++-.+....+++-|-.|...+|.++.+|+++++...+.+.+-.+||.++ ...|++.
T Consensus 10 ~~~~~pl~~~i~~LLltl~~~g~a~~~t~~~sr~~fe~~A~~~~nal~~rv~~~~~~l~st~a~f~s~-----~~~it~~ 84 (348)
T COG3614 10 VRVWVPLLVLIVSLLLTLTAAGLAYSLTLEQSRTLFERLADRQTNALQQRVDLDQHLLRSTRAFFRSS-----TSDITRR 84 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCCCcHH
Confidence 33344444466667777777666777777777788999999999999999999999999999999885 6689999
Q ss_pred HHHHHHhhhhhcCCCcceeeeecccCchhHHHHHHHhcceee-ecccCCCCCCCCCCC-CCCCCccceeEe--ecCC-cc
Q 001941 164 TFTRYTERTAFERPLTSGVAYAVRVLRSEREEFEKQQGWTIK-RMDTFEHNPVHKDEP-SPIEEEYAPVIF--AQDT-VS 238 (993)
Q Consensus 164 ~f~~~t~~~~~~~p~i~~~~~~~~v~~~er~~fE~~~~~~i~-~~~~~~~~~~~~~~~-~~~~~~Y~pvi~--~~~~-~~ 238 (993)
+|+.|+. ++.....+.|+.|...|...+++.||..+...+. .......+-.++..| .+.+++|+||-| |.+. |.
T Consensus 85 ~Fr~fs~-~ld~~~~~~~~q~igfv~~~~~e~~ear~~~~~l~~~~~~~p~~~~~i~pl~t~~~~rypI~~iePl~~~N~ 163 (348)
T COG3614 85 EFRRFSL-TLDGDQSFIALQWIGFVRPVQAETFEARLQQDFLENFQPTVPKTGEIIYPLGTDDPARYPIQYIEPLNYDNR 163 (348)
T ss_pred HHHHhhh-hhcccccchhhhcccccchhhhccchhhhhhhhhhcCCCcccCCCcccccCCCCCcceeeeEeecCCCccch
Confidence 9999998 7788889999999999999999999976532221 111111112334456 778889999944 6555 88
Q ss_pred ceeeeccccCcccHHHHHHHHhcCCcccccceeecccC-----CceeEEEEEeeccCCCCCCChHHHHHhhcceeeeeee
Q 001941 239 HVISLDMLSGKEDRENVLRARASGKGVLTAPFRLLKTN-----RLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFD 313 (993)
Q Consensus 239 ~~~g~D~~s~~~~r~~i~~Ar~tg~~~~t~p~~l~~~~-----~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~~~~ 313 (993)
.++||||.|+|.||+|++.|++++++.+|+|++|+|.. .+|+++|.|||..+.++...+. ...+.||++..+.
T Consensus 164 ~aLGfDm~SE~~rR~A~d~al~n~q~~aT~pv~LvQ~~g~~q~~~gfLv~~Pv~~s~~~~~~~~g--q~~l~Gfl~~~~~ 241 (348)
T COG3614 164 KALGFDMESEPFRRAAADEALENRQPHATGPVTLVQGGGDKQIVKGFLVYMPVFRSGDDESPLPG--QAVLVGFLYLATR 241 (348)
T ss_pred hhhcchhccCHHHHHHHHHHHhcCCCcccCceeeeecccccccccceEEEEeeeccCCCCCCCcc--hhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999842 3689999999998765544332 3456689888888
Q ss_pred hHHHHHH
Q 001941 314 IESLVEK 320 (993)
Q Consensus 314 v~~l~~~ 320 (993)
..+++..
T Consensus 242 ~~~~~qs 248 (348)
T COG3614 242 FEKLVQS 248 (348)
T ss_pred Hhhhhhh
Confidence 7776653
No 45
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.85 E-value=1.4e-19 Score=199.25 Aligned_cols=212 Identities=20% Similarity=0.343 Sum_probs=171.8
Q ss_pred HHhhccccHhhHhHHHHHHHHHH---HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHH
Q 001941 438 SQFLATVSHEIRTPMNGVLGMLD---MLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (993)
Q Consensus 438 s~Fla~vSHELRTPL~~I~g~le---lL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ 514 (993)
.+-+.++||||..|||++..++= ...+...+.....++..+..-.+++..+|+.+..|+|-.+++..+ .|++|.+
T Consensus 452 GqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~l--qpV~L~~ 529 (673)
T COG4192 452 GQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESL--QPVRLNS 529 (673)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccHHH
Confidence 46778899999999999988763 333444555668899999999999999999999999987776554 5689999
Q ss_pred HHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchhhhhcc
Q 001941 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELS 594 (993)
Q Consensus 515 ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i~~~~~ 594 (993)
++..+..++..+.+.+.+.+..-. + ...|.||..+++||+.||+-||++++..-...|.+....
T Consensus 530 ~v~~AweLl~~khk~rQ~~Li~pt--D-~~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~------------- 593 (673)
T COG4192 530 VVEQAWELLQTKHKRRQIKLINPT--D-DLMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALG------------- 593 (673)
T ss_pred HHHHHHHHHHhhhhhccccccCCc--c-cceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEeec-------------
Confidence 999999999998888888776433 2 236899999999999999999999875432233332111
Q ss_pred cccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCc
Q 001941 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674 (993)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~Gt 674 (993)
.+...+++.|.|+|.|-|-+..+++|.||.. .+.-|.
T Consensus 594 -------------------------------------~~~e~l~i~i~DnGqGwp~~l~dkLl~PFtt------sK~vgL 630 (673)
T COG4192 594 -------------------------------------TEQEMLRIAIIDNGQGWPHELVDKLLTPFTT------SKEVGL 630 (673)
T ss_pred -------------------------------------CcccceEEEEecCCCCCchhHHHHhcCCccc------cccccc
Confidence 1122478999999999999999999999964 244699
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 001941 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (993)
Q Consensus 675 GLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~ 710 (993)
|||||||..|++.|.|++.+.|...+|.++.+.+..
T Consensus 631 GlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL~f~v 666 (673)
T COG4192 631 GLGLSISQSLMEQMQGRLALASTLTKNAMVILEFQV 666 (673)
T ss_pred ccchhHHHHHHHHhcCcchHhhhcccCcEEEEEEee
Confidence 999999999999999999999999999998877644
No 46
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.80 E-value=5.5e-19 Score=167.67 Aligned_cols=109 Identities=36% Similarity=0.595 Sum_probs=97.0
Q ss_pred eCHHHHHHHHHHHHHHHHhcccC-CeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCC
Q 001941 548 GDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 626 (993)
Q Consensus 548 gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (993)
||+.++++++.||+.||++|+++ |.|.|.+...+
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~--------------------------------------------- 35 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEEDD--------------------------------------------- 35 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEET---------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEec---------------------------------------------
Confidence 79999999999999999999976 88877765321
Q ss_pred CCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEE
Q 001941 627 FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 706 (993)
Q Consensus 627 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~ 706 (993)
..+.|+|.|+|.|||++.++++|+||++.+. .....+|+||||++|+.++++|+|++.+.|.+++||+|+|
T Consensus 36 --------~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~gt~v~~ 106 (111)
T PF02518_consen 36 --------DHLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIVKQIAERHGGELTIESSEGGGTTVTF 106 (111)
T ss_dssp --------TEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETTTEEEEEE
T ss_pred --------CeEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHHHHHHHHHCCCEEEEEEcCCCcEEEEE
Confidence 2478999999999999999999999998876 2344578999999999999999999999999999999999
Q ss_pred EEEe
Q 001941 707 TAVF 710 (993)
Q Consensus 707 ~lp~ 710 (993)
++|+
T Consensus 107 ~~p~ 110 (111)
T PF02518_consen 107 TLPL 110 (111)
T ss_dssp EEEG
T ss_pred EEEC
Confidence 9997
No 47
>PRK13559 hypothetical protein; Provisional
Probab=99.79 E-value=3e-18 Score=195.94 Aligned_cols=186 Identities=13% Similarity=0.160 Sum_probs=139.5
Q ss_pred HHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHH
Q 001941 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (993)
Q Consensus 436 aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~l 515 (993)
.+.+|++.++||+||||+.|.|+++++... ....++++.+...+.+|..+++++++.++ ..++++.++
T Consensus 169 ~~~~l~~~l~H~~~n~L~~i~~~~~l~~~~---~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~ 236 (361)
T PRK13559 169 HERRLAREVDHRSKNVFAVVDSIVRLTGRA---DDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEEL 236 (361)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHH
Confidence 345688899999999999999999987622 23456788888899999999998887643 356899999
Q ss_pred HHHHHHHHhhhhhccCcEEEEEecCCCCceEEeC-HHHHHHHHHHHHHHHHhc---c-cCCeEEEEEEEeecccccchhh
Q 001941 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGD-PGRFRQIITNLMGNSIKF---T-EKGHIFVTVYLVEEVVDSIEVE 590 (993)
Q Consensus 516 l~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD-~~rL~QIL~NLL~NAiKf---T-~~G~I~v~v~~~e~~~~~i~i~ 590 (993)
+++++..+... +..+.+..+ .+ .+..+ ...|.||+.||+.||+|| + +.|.|.|.+...
T Consensus 237 ~~~~~~~~~~~----~~~i~~~~~-~~--~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~---------- 299 (361)
T PRK13559 237 IRAQVAPYAPR----ATRVAFEGP-GI--RLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPS---------- 299 (361)
T ss_pred HHHHHHhhcCC----CceEEEECC-Ce--eeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEec----------
Confidence 99998877533 344444322 11 12222 346999999999999999 4 357776654210
Q ss_pred hhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCc
Q 001941 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 670 (993)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~ 670 (993)
.+...+.+.|.|+|.|++++
T Consensus 300 -----------------------------------------~~~~~~~i~v~d~G~~~~~~------------------- 319 (361)
T PRK13559 300 -----------------------------------------PEGAGFRIDWQEQGGPTPPK------------------- 319 (361)
T ss_pred -----------------------------------------CCCCeEEEEEECCCCCCCCC-------------------
Confidence 01124789999999997653
Q ss_pred CCCccchHHHHHHHHHH-cCCEEEEEEeCCCeEEEEEEEEeC
Q 001941 671 HGGTGIGLSISKYLVGR-MKGEIGFVSIPNIGSTFTFTAVFG 711 (993)
Q Consensus 671 ~~GtGLGLsI~k~LVe~-mgG~I~v~S~~g~GStF~~~lp~~ 711 (993)
..|+|+||+||+++++. |||+|++++. +.||+|++++|..
T Consensus 320 ~~~~g~Gl~i~~~~v~~~~gG~i~~~~~-~~G~~~~l~~P~~ 360 (361)
T PRK13559 320 LAKRGFGTVIIGAMVESQLNGQLEKTWS-DDGLLARIEIPSR 360 (361)
T ss_pred CCCCCcHHHHHHHHHHHHcCCeEEEEEc-CCeEEEEEEEeCC
Confidence 23789999999999987 9999999998 5799999999963
No 48
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.74 E-value=1.9e-16 Score=191.99 Aligned_cols=191 Identities=20% Similarity=0.208 Sum_probs=136.6
Q ss_pred ccccHhhHhHHHHHHHHHHH----HhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHH
Q 001941 442 ATVSHEIRTPMNGVLGMLDM----LMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (993)
Q Consensus 442 a~vSHELRTPL~~I~g~lel----L~~~--~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~l 515 (993)
..++||+++|++.++.++.. +.+. ...+...+.+..+.....++...+.+++...+. ...++++.+.
T Consensus 365 ~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~-------~~~~~~l~~~ 437 (565)
T PRK10935 365 ATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFRL-------TIQEANLGSA 437 (565)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCCCCCHHHH
Confidence 44899999998888766543 3322 112334556666777777777777777764442 3346789999
Q ss_pred HHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchhhhhccc
Q 001941 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSS 595 (993)
Q Consensus 516 l~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i~~~~~~ 595 (993)
+++++..+... .++.+.+...........+++.++.|++.||+.||+||++.|.|.+.+...
T Consensus 438 l~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~--------------- 499 (565)
T PRK10935 438 LEEMLDQLRNQ---TDAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTN--------------- 499 (565)
T ss_pred HHHHHHHHHHh---hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEc---------------
Confidence 99999888754 233343333211111222345679999999999999999888877765321
Q ss_pred ccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCcc
Q 001941 596 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675 (993)
Q Consensus 596 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtG 675 (993)
+...+.++|.|+|+|||++. ..|+|
T Consensus 500 -------------------------------------~~~~~~i~V~D~G~Gi~~~~------------------~~~~g 524 (565)
T PRK10935 500 -------------------------------------PDGEHTVSIRDDGIGIGELK------------------EPEGH 524 (565)
T ss_pred -------------------------------------CCCEEEEEEEECCcCcCCCC------------------CCCCC
Confidence 01247899999999999631 24789
Q ss_pred chHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 676 LGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
+||+||+++++.|||+|++.|.+|+||+|++++|...
T Consensus 525 lGL~i~~~iv~~~~G~i~v~s~~~~Gt~~~i~lP~~~ 561 (565)
T PRK10935 525 YGLNIMQERAERLGGTLTISQPPGGGTTVSLTFPSQQ 561 (565)
T ss_pred cCHHHHHHHHHHcCCEEEEEECCCCcEEEEEEECCCC
Confidence 9999999999999999999999999999999999753
No 49
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.73 E-value=1.7e-16 Score=181.82 Aligned_cols=192 Identities=26% Similarity=0.392 Sum_probs=137.7
Q ss_pred hccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHHHHHHH
Q 001941 441 LATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVL 520 (993)
Q Consensus 441 la~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ll~~vl 520 (993)
+...+||..|-|+.|.|++++=.- ++..+|+....+.-+. .++.+.. ++. ...+...+
T Consensus 337 LRaq~HEfmNkLhtI~GLlql~~y----d~a~~~I~~~~~~qq~---~~~~l~~--~i~-------------~~~lAg~L 394 (537)
T COG3290 337 LRAQSHEFMNKLHTILGLLQLGEY----DDALDYIQQESEEQQE---LIDSLSE--KIK-------------DPVLAGFL 394 (537)
T ss_pred HHHhhHHHHHHHHHHHHHHhhccH----HHHHHHHHHHHhhhhh---hHHHHHH--hcc-------------cHHHHHHH
Confidence 344699999999999999987321 2334555544433222 2222211 111 12334444
Q ss_pred HHHhhhhhccCcEEEEEecCCCCce-EEeCHHHHHHHHHHHHHHHHhccc----CCeEEEEEEEeecccccchhhhhccc
Q 001941 521 SLFSGKSQDKGVELAVYISDRVPET-LIGDPGRFRQIITNLMGNSIKFTE----KGHIFVTVYLVEEVVDSIEVETELSS 595 (993)
Q Consensus 521 ~~~~~~a~~k~I~l~~~i~~~~p~~-v~gD~~rL~QIL~NLL~NAiKfT~----~G~I~v~v~~~e~~~~~i~i~~~~~~ 595 (993)
---..+|+++|+.+.++....+|.. -.-++..+--|+.||++||+.++. +..|.+.+.
T Consensus 395 lgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~----------------- 457 (537)
T COG3290 395 LGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLS----------------- 457 (537)
T ss_pred HhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEE-----------------
Confidence 4445678999999998876555431 224888999999999999999974 234444332
Q ss_pred ccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCcc
Q 001941 596 SKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTG 675 (993)
Q Consensus 596 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtG 675 (993)
.+...+.++|+|||||||++.++++|+.-|..+ ..++.|
T Consensus 458 ------------------------------------~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk-----~~~~rG 496 (537)
T COG3290 458 ------------------------------------DRGDELVIEVADTGPGIPPEVRDKIFEKGVSTK-----NTGGRG 496 (537)
T ss_pred ------------------------------------ecCCEEEEEEeCCCCCCChHHHHHHHhcCcccc-----CCCCCc
Confidence 123358899999999999999999999876432 247899
Q ss_pred chHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 676 IGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 676 LGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
.||++||++|+.+||.|+++|+++.||+|++.+|...
T Consensus 497 iGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~ 533 (537)
T COG3290 497 IGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVK 533 (537)
T ss_pred hhHHHHHHHHHHcCceEEEeeCCCCceEEEEECCCCc
Confidence 9999999999999999999999999999999999864
No 50
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.69 E-value=3.3e-15 Score=181.71 Aligned_cols=183 Identities=17% Similarity=0.190 Sum_probs=132.6
Q ss_pred hHhHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHHHHHHHHHHhh
Q 001941 448 IRTPMNGVLGMLDMLM--DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLFSG 525 (993)
Q Consensus 448 LRTPL~~I~g~lelL~--~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ll~~vl~~~~~ 525 (993)
+..+|+.+...+..+. ....++...+.+..+....+.+...+.+++...+.. ..+.++.+.+++++..+..
T Consensus 373 i~~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~~-------~~~~~l~~~l~~~~~~~~~ 445 (569)
T PRK10600 373 IAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRLQ-------LTEPGLRPALEASCEEFSA 445 (569)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC-------cccCCHHHHHHHHHHHHHH
Confidence 3334455544444332 223445667889999999999999999999876642 2346888999998888765
Q ss_pred hhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchhhhhcccccCcCCCCCc
Q 001941 526 KSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPV 605 (993)
Q Consensus 526 ~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~ 605 (993)
.. ++.+.+............++..+.||+.|+++||+||++.+.|.|++...
T Consensus 446 ~~---~~~i~~~~~~~~~~~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~------------------------- 497 (569)
T PRK10600 446 RF---GFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQN------------------------- 497 (569)
T ss_pred Hh---CCeEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc-------------------------
Confidence 43 33444443221111111234569999999999999999888777665321
Q ss_pred cccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHH
Q 001941 606 ADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLV 685 (993)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LV 685 (993)
...+.++|.|+|+|||++. ..|+|+||+||++++
T Consensus 498 ----------------------------~~~~~l~V~D~G~Gi~~~~------------------~~~~glGL~i~~~~~ 531 (569)
T PRK10600 498 ----------------------------QNQVKLSVQDNGCGVPENA------------------ERSNHYGLIIMRDRA 531 (569)
T ss_pred ----------------------------CCEEEEEEEECCCCCCccc------------------cCCCCccHHHHHHHH
Confidence 1246899999999999752 136799999999999
Q ss_pred HHcCCEEEEEEeCCCeEEEEEEEEeC
Q 001941 686 GRMKGEIGFVSIPNIGSTFTFTAVFG 711 (993)
Q Consensus 686 e~mgG~I~v~S~~g~GStF~~~lp~~ 711 (993)
+.|||+|.+.|.+|+||+|++++|..
T Consensus 532 ~~lgG~l~i~s~~~~Gt~v~i~lp~~ 557 (569)
T PRK10600 532 QSLRGDCRVRRRESGGTEVVVTFIPE 557 (569)
T ss_pred HHcCCEEEEEECCCCCEEEEEEEecC
Confidence 99999999999999999999999885
No 51
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.62 E-value=2.7e-15 Score=186.50 Aligned_cols=400 Identities=22% Similarity=0.256 Sum_probs=275.8
Q ss_pred HHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcce
Q 001941 427 KKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLM-DTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLEL 505 (993)
Q Consensus 427 ~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~-~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l 505 (993)
++++..+..+...++..++|..|+|++++.+....+. +..+...+.-.+++..+....+..+++.-.+.++...|....
T Consensus 376 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~ 455 (786)
T KOG0519|consen 376 KEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLG 455 (786)
T ss_pred hhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCccc
Confidence 3444445556667777777999999999999988443 334444455556677777778899999999999877777777
Q ss_pred eeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHh--cccCCeE-EEEEEEeec
Q 001941 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIK--FTEKGHI-FVTVYLVEE 582 (993)
Q Consensus 506 ~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiK--fT~~G~I-~v~v~~~e~ 582 (993)
+...+.+..++.............+...+.+.+....+..+.+|..++.|++.+..+++.+ ++..|+- .+.+....
T Consensus 456 ~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~- 534 (786)
T KOG0519|consen 456 ESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAEL- 534 (786)
T ss_pred chhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEecc-
Confidence 8888999999999999988888888888888888888888889999999999999999999 8877632 22222110
Q ss_pred ccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccc
Q 001941 583 VVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQ 662 (993)
Q Consensus 583 ~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q 662 (993)
....+++... ..+. +. +...+.....+.+.++|++.|+....++..+.-|.+
T Consensus 535 ~~~~vd~~~~-----------------~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 586 (786)
T KOG0519|consen 535 LGISVDVSLS-----------------LSLA-FW----------FLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKS 586 (786)
T ss_pred cCcccccccc-----------------chhh-hh----------hcccccccchheEEeeeccccccCCCcchhhhhhhc
Confidence 0000000000 0000 00 000111113578899999999999888888887777
Q ss_pred cCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEe-CCC----eEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccC
Q 001941 663 VGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI-PNI----GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQ 737 (993)
Q Consensus 663 ~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~-~g~----GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (993)
....+++...+.+++++.|++..+.++|.+++.-. .+. -+.+....-............. ............++
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~l~ 665 (786)
T KOG0519|consen 587 LRDLTSKLSSGSGLSLALCPENSQLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKLSGN-PEKLAEPRDSKLLT 665 (786)
T ss_pred cccchhhcccccccccccchhhHHhhhcccccccccccCCccHHHHHHhhccccccccccccCCC-cccccCcccccccc
Confidence 65555554567899999999999999999987621 110 0111111100000000000000 00011111445678
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
|.++|+|||+++++.|...+|.++|+.+..+.++.+|++.+. .+..||++++|.+|+..|+-.. .+++|+.-....
T Consensus 666 g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~-~~~~y~~ifmD~qMP~mDG~e~---~~~irk~~~~~~ 741 (786)
T KOG0519|consen 666 GPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK-PPHSYDVIFMDLQMPEMDGYEA---TREIRKKERWHL 741 (786)
T ss_pred CCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC-CCCcccEEEEEcCCcccchHHH---HHHHHHhhcCCC
Confidence 999999999999999999999999999999999999999987 4578999999999988877443 455555433333
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
|.+++.|+..++.... +...|++.++.||+....+..++++.+
T Consensus 742 pIvAlTa~~~~~~~~~--c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 742 PIVALTADADPSTEEE--CLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred CEEEEecCCcHHHHHH--HHHhCCceEEcccccHHHHHHHHHHHh
Confidence 7777777755443332 233489999999999999999998765
No 52
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.60 E-value=8e-14 Score=169.06 Aligned_cols=144 Identities=19% Similarity=0.278 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHH---HHHHHHHHHhccc-------------CCeEEE
Q 001941 512 LRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQI---ITNLMGNSIKFTE-------------KGHIFV 575 (993)
Q Consensus 512 L~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QI---L~NLL~NAiKfT~-------------~G~I~v 575 (993)
+..+.+..-......+...+.++.+.+... .+..|+..+.++ |.||+.||++|+- .|.|.+
T Consensus 345 ~~~~~~~~~rlvrdla~~~gk~v~l~~~g~---~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l 421 (670)
T PRK10547 345 MEYVFSRFPRLVRDLAGKLGKQVELTLVGS---STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLIL 421 (670)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEeCC---ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCceEE
Confidence 455555555555555554455555555433 245799999999 6799999999962 355555
Q ss_pred EEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhH--
Q 001941 576 TVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ-- 653 (993)
Q Consensus 576 ~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~-- 653 (993)
++.. +...+.|+|+|+|.||+++..
T Consensus 422 ~a~~-----------------------------------------------------~~~~v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 422 SAEH-----------------------------------------------------QGGNICIEVTDDGAGLNRERILA 448 (670)
T ss_pred EEEE-----------------------------------------------------cCCEEEEEEEeCCCCCCHHHHHH
Confidence 4421 112478999999999998654
Q ss_pred -------------------hhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 654 -------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 654 -------------------~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
+.||+|||..... .+..+|+|+||+|||++++.|||+|.+.|.+|+||+|++++|+..
T Consensus 449 ~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~i~LPltl 525 (670)
T PRK10547 449 KAASQGLAVSENMSDEEVGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIRILLPLTL 525 (670)
T ss_pred HHHHcCCCccccCCHHHHHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEechh
Confidence 3699997765432 234579999999999999999999999999999999999999864
No 53
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.51 E-value=2.2e-13 Score=159.95 Aligned_cols=116 Identities=21% Similarity=0.316 Sum_probs=91.2
Q ss_pred EeCHHHHHHHHHHHHHHHHhcccCCe----EEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCC
Q 001941 547 IGDPGRFRQIITNLMGNSIKFTEKGH----IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDG 622 (993)
Q Consensus 547 ~gD~~rL~QIL~NLL~NAiKfT~~G~----I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 622 (993)
.+++..|.|++.||++||++|++.++ |.|.+...+
T Consensus 31 ~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~----------------------------------------- 69 (535)
T PRK04184 31 DNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVD----------------------------------------- 69 (535)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEcc-----------------------------------------
Confidence 34668899999999999999997643 444432110
Q ss_pred CCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCC--cCcCCCccchHHHHHHHHHHcCCE-EEEEEeCC
Q 001941 623 STSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRMKGE-IGFVSIPN 699 (993)
Q Consensus 623 ~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~--s~~~~GtGLGLsI~k~LVe~mgG~-I~v~S~~g 699 (993)
.+...+.|+|+|+|+|||+++++++|++|++.+... ....||+||||++|+.+++.|+|. |.+.|.++
T Consensus 70 ---------~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~ 140 (535)
T PRK04184 70 ---------EGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTG 140 (535)
T ss_pred ---------CCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecC
Confidence 011246799999999999999999999997654322 234578999999999999999986 99999999
Q ss_pred CeE-EEEEEEEeCC
Q 001941 700 IGS-TFTFTAVFGN 712 (993)
Q Consensus 700 ~GS-tF~~~lp~~~ 712 (993)
.|+ .|+|++++..
T Consensus 141 ~g~~~~~~~l~id~ 154 (535)
T PRK04184 141 GSKKAYYFELKIDT 154 (535)
T ss_pred CCceEEEEEEEecc
Confidence 998 8999998764
No 54
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.42 E-value=6.5e-12 Score=147.57 Aligned_cols=223 Identities=16% Similarity=0.103 Sum_probs=156.6
Q ss_pred eEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 001941 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (993)
Q Consensus 740 rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (993)
+++++||++..+..+...|...|+.+..+.++.++++.+.. ..+|++++|..++..+ ....++.++.........
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~---g~~l~~~i~~~~~~~~~~ 78 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER--EQPDIILLDVMMPGMD---GFEVCRRLKSDPATTHIP 78 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCCC---HHHHHHHHHcCcccCCCC
Confidence 79999999999999999999999999999999999988854 4589999998765432 334566666543222222
Q ss_pred EEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCCCCC------CcccC-----CCCcchhhhccCCCe
Q 001941 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKG------NIRNW-----ELPSMSLRHLLLGRK 888 (993)
Q Consensus 820 ~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~~~~------~~~~~-----~~~~~~~~~~l~~~~ 888 (993)
+++++............ ..|...++.||+....+...+..+....... ..... ..+...........+
T Consensus 79 ii~~s~~~~~~~~~~~~-~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (457)
T PRK09581 79 VVMVTALDDPEDRVRGL-EAGADDFLTKPINDVALFARVKSLTRLKMVIDELRLRASTNAEIGVTALMIMAYANKDEDGR 157 (457)
T ss_pred EEEEECCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHhhcccccccccCce
Confidence 33333322222222222 2367789999999999888776654321100 00000 000000111223568
Q ss_pred EEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEEEEc
Q 001941 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAILVWK 965 (993)
Q Consensus 889 ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~~~~ 965 (993)
||+|||++..+..+...|.. ++.+..+.++.+|+..+. .+.||+|++|+.||+|||++++++||+. ..+|||+..
T Consensus 158 vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~-~~~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ii~ls 235 (457)
T PRK09581 158 ILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAA-ETNYDLVIVSANFENYDPLRLCSQLRSKERTRYVPILLLV 235 (457)
T ss_pred EEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcc-cCCCCEEEecCCCCCchHhHHHHHHHhccccCCCcEEEEe
Confidence 99999999999999999975 477889999999999985 5789999999999999999999999964 578998885
Q ss_pred ccccc
Q 001941 966 LNLKI 970 (993)
Q Consensus 966 ~~~~~ 970 (993)
-....
T Consensus 236 ~~~~~ 240 (457)
T PRK09581 236 DEDDD 240 (457)
T ss_pred CCCCh
Confidence 54443
No 55
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.40 E-value=4.9e-12 Score=117.18 Aligned_cols=109 Identities=48% Similarity=0.705 Sum_probs=91.3
Q ss_pred eCHHHHHHHHHHHHHHHHhcccC-CeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCC
Q 001941 548 GDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 626 (993)
Q Consensus 548 gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (993)
+|+..|.+++.|++.||+++... +.|.|.+...
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~---------------------------------------------- 34 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERD---------------------------------------------- 34 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc----------------------------------------------
Confidence 47889999999999999999876 6666655321
Q ss_pred CCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEE
Q 001941 627 FKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTF 706 (993)
Q Consensus 627 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~ 706 (993)
...+.+.|.|+|.|++++..+++|++++..+. .....++.|+||++|+.+++.|+|++.+.+.++.|++|+|
T Consensus 35 -------~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~ 106 (111)
T smart00387 35 -------GDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTI 106 (111)
T ss_pred -------CCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHHHHHHHcCCEEEEEecCCCcEEEEE
Confidence 12367999999999999999999999986543 2233567999999999999999999999999899999999
Q ss_pred EEEe
Q 001941 707 TAVF 710 (993)
Q Consensus 707 ~lp~ 710 (993)
.+|+
T Consensus 107 ~~~~ 110 (111)
T smart00387 107 TLPL 110 (111)
T ss_pred EeeC
Confidence 9986
No 56
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.23 E-value=9.1e-11 Score=140.41 Aligned_cols=129 Identities=18% Similarity=0.212 Sum_probs=86.9
Q ss_pred hccCcEEEEEecCCCCceEE--eCHHHHHHHHHHHHHHHHhcccCCe----EEEEEEEeecccccchhhhhcccccCcCC
Q 001941 528 QDKGVELAVYISDRVPETLI--GDPGRFRQIITNLMGNSIKFTEKGH----IFVTVYLVEEVVDSIEVETELSSSKNTLS 601 (993)
Q Consensus 528 ~~k~I~l~~~i~~~~p~~v~--gD~~rL~QIL~NLL~NAiKfT~~G~----I~v~v~~~e~~~~~i~i~~~~~~~~~~l~ 601 (993)
..+.+.+...+..+.+ .+. .|...|.+++.|||+||++|++.++ |.|.+. .
T Consensus 21 ~~~~iS~aEfF~kN~~-~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie--~-------------------- 77 (795)
T PRK14868 21 SQREISIAEFFEKNKH-MLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIE--E-------------------- 77 (795)
T ss_pred hccccceeeecccCcc-eeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEE--E--------------------
Confidence 4466777766655443 233 3577899999999999999997654 444332 1
Q ss_pred CCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCC----CcCcCCCccch
Q 001941 602 GYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS----ISRTHGGTGIG 677 (993)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s----~s~~~~GtGLG 677 (993)
+...+.|.|+|+|+|||+++++++|+||++++.- .++...|.|||
T Consensus 78 -------------------------------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLg 126 (795)
T PRK14868 78 -------------------------------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGIS 126 (795)
T ss_pred -------------------------------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehH
Confidence 1123679999999999999999999999865421 22334456666
Q ss_pred HHHHHHHHHHcCCEEEEEEeCCC-eEEEEEEEEeC
Q 001941 678 LSISKYLVGRMKGEIGFVSIPNI-GSTFTFTAVFG 711 (993)
Q Consensus 678 LsI~k~LVe~mgG~I~v~S~~g~-GStF~~~lp~~ 711 (993)
|+++...+ .+||.|.+.|..+. +..+.+.+...
T Consensus 127 lai~~sql-t~GgpI~I~S~~~~~~~g~~~~L~Id 160 (795)
T PRK14868 127 AAVLYSQL-TSGKPAKITSRTQGSEEAQYFELIID 160 (795)
T ss_pred HHHHHHHH-cCCCcEEEEeCCCCCCceeEEEEEEe
Confidence 66665555 37889999999754 33344444443
No 57
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.22 E-value=5.6e-11 Score=138.50 Aligned_cols=110 Identities=24% Similarity=0.371 Sum_probs=84.9
Q ss_pred EEeCHHHHHHHHHHHHHHHHhcccCC----eEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCC
Q 001941 546 LIGDPGRFRQIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 621 (993)
Q Consensus 546 v~gD~~rL~QIL~NLL~NAiKfT~~G----~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 621 (993)
+.+|...|.+++.||++||++|+..+ .|.|.+...
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~----------------------------------------- 60 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI----------------------------------------- 60 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----------------------------------------
Confidence 34688999999999999999998653 344433210
Q ss_pred CCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCC--cCcCCCccchHHHHHHHHHHcCCE-EEEEEeC
Q 001941 622 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 698 (993)
Q Consensus 622 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~--s~~~~GtGLGLsI~k~LVe~mgG~-I~v~S~~ 698 (993)
+...+.++|+|+|+|||++.++++|++|++.+... ....|+.|+||++|+.+++.|+|. +.+.|..
T Consensus 61 -----------g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~ 129 (488)
T TIGR01052 61 -----------GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISST 129 (488)
T ss_pred -----------CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEec
Confidence 01135799999999999999999999998765432 224578999999999999999998 9999988
Q ss_pred CCeEEEEEEE
Q 001941 699 NIGSTFTFTA 708 (993)
Q Consensus 699 g~GStF~~~l 708 (993)
+ |+.|..++
T Consensus 130 ~-g~~~~~~~ 138 (488)
T TIGR01052 130 G-GEIYVYKM 138 (488)
T ss_pred C-CceEEEEE
Confidence 6 66663333
No 58
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.21 E-value=4.4e-11 Score=103.23 Aligned_cols=66 Identities=38% Similarity=0.748 Sum_probs=61.6
Q ss_pred HHHHhhccccHhhHhHHHHHHHHHHHHhc-CCCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001941 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMD-TELDVTQ-QDYVRTAQASGKALVSLINEVLDQAKVESG 501 (993)
Q Consensus 436 aKs~Fla~vSHELRTPL~~I~g~lelL~~-~~l~~~q-~~~l~~i~~s~~~L~~lIndlLd~skiesg 501 (993)
+|++|++++||||||||++|.++++++.+ ...++++ +++++.+..+++++..+++++++++|+++|
T Consensus 1 s~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 1 SKGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 47899999999999999999999999999 7788887 999999999999999999999999999987
No 59
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.18 E-value=1.2e-10 Score=139.36 Aligned_cols=114 Identities=23% Similarity=0.318 Sum_probs=88.1
Q ss_pred EeCHHHHH---HHHHHHHHHHHhcccCC----eEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCccccc
Q 001941 547 IGDPGRFR---QIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFN 619 (993)
Q Consensus 547 ~gD~~rL~---QIL~NLL~NAiKfT~~G----~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 619 (993)
.|++..++ +++.||++||++|+..+ .|.|.+...
T Consensus 28 lGf~~~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~--------------------------------------- 68 (659)
T PRK14867 28 LGYSGKLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKL--------------------------------------- 68 (659)
T ss_pred eechhHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC---------------------------------------
Confidence 45555555 99999999999998653 455444210
Q ss_pred CCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCC--cCcCCCccchHHHHHHHHHHc-CCEEEEEE
Q 001941 620 QDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI--SRTHGGTGIGLSISKYLVGRM-KGEIGFVS 696 (993)
Q Consensus 620 ~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~--s~~~~GtGLGLsI~k~LVe~m-gG~I~v~S 696 (993)
+...+.++|+|+|+|||++.++++|++|+.++.-. ....|+.|+||+++..+.+.+ ||.+.+.|
T Consensus 69 -------------g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S 135 (659)
T PRK14867 69 -------------GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITT 135 (659)
T ss_pred -------------CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEE
Confidence 11246799999999999999999999998643311 134578999999999999885 66799999
Q ss_pred eCCCeEEEEEEEEeCC
Q 001941 697 IPNIGSTFTFTAVFGN 712 (993)
Q Consensus 697 ~~g~GStF~~~lp~~~ 712 (993)
.++.|++|++.+|+..
T Consensus 136 ~~g~G~~f~i~L~i~i 151 (659)
T PRK14867 136 STGDGKIHEMEIKMSV 151 (659)
T ss_pred EcCCCEEEEEEEEEEe
Confidence 9999999999999854
No 60
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.18 E-value=2.3e-10 Score=104.21 Aligned_cols=71 Identities=51% Similarity=0.673 Sum_probs=59.6
Q ss_pred eEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEE
Q 001941 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708 (993)
Q Consensus 636 ~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~l 708 (993)
.+.|.|.|+|.|++++.+++.|.+|. +.......++.|+||++|+++++.|||++.+.+..+.|++|++++
T Consensus 33 ~~~v~i~d~g~g~~~~~~~~~~~~~~--~~~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 103 (103)
T cd00075 33 HLEIRVEDNGPGIPEEDLERIFERFS--DGSRSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred EEEEEEEeCCCCCCHHHHHHHhhhhh--cCCCCCCCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEC
Confidence 46799999999999999999999872 112223445899999999999999999999999988999998763
No 61
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.17 E-value=9.4e-11 Score=125.85 Aligned_cols=76 Identities=24% Similarity=0.326 Sum_probs=71.0
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhc--cCCceEEEEc
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFES--FLLIAILVWK 965 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~--~~~~~~~~~~ 965 (993)
+|||||||+..+..+...|+..||+|.++.+|.+|++.+. .. ||+|++|++||+|||+++|++||+ ....|||+-+
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~Lt 79 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAR-EQ-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIVLT 79 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cC-CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEEEE
Confidence 7999999999999999999999999999999999999996 45 999999999999999999999994 4888898764
No 62
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.13 E-value=4e-10 Score=111.21 Aligned_cols=97 Identities=14% Similarity=0.303 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHHHHhccc----CCeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCC
Q 001941 549 DPGRFRQIITNLMGNSIKFTE----KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (993)
Q Consensus 549 D~~rL~QIL~NLL~NAiKfT~----~G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (993)
|...+.+++.|+++||++|+- .|.|.|++...
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~-------------------------------------------- 71 (137)
T TIGR01925 36 ELTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIE-------------------------------------------- 71 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEe--------------------------------------------
Confidence 567899999999999999852 35565554321
Q ss_pred CCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEE
Q 001941 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (993)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF 704 (993)
...+.++|.|+|+|||+ .+++|+||+..++ ..+|+|+||++++++ .+++.+++.+++||+|
T Consensus 72 ---------~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~----~~~~~GlGL~lv~~~----~~~l~~~~~~~~Gt~v 132 (137)
T TIGR01925 72 ---------DHEVYITVRDEGIGIEN--LEEAREPLYTSKP----ELERSGMGFTVMENF----MDDVSVDSEKEKGTKI 132 (137)
T ss_pred ---------CCEEEEEEEEcCCCcCc--hhHhhCCCcccCC----CCCCCcccHHHHHHh----CCcEEEEECCCCCeEE
Confidence 11478999999999983 6789999986432 235899999998874 5799999999999999
Q ss_pred EEEE
Q 001941 705 TFTA 708 (993)
Q Consensus 705 ~~~l 708 (993)
+++.
T Consensus 133 ~i~~ 136 (137)
T TIGR01925 133 IMKK 136 (137)
T ss_pred EEEe
Confidence 9863
No 63
>COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.10 E-value=5.1e-09 Score=110.07 Aligned_cols=168 Identities=17% Similarity=0.242 Sum_probs=117.0
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHhHHHHHHHHHhcccCCCCCCCCCHHHHHHHHhhhhhcCCCcc
Q 001941 101 LWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTS 180 (993)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~id~~~f~~~t~~~~~~~p~i~ 180 (993)
+.++...+...+++.|+...+..--.-.-|..|+|.++..|+.|+....+ .|++.|+.|+.-+......+.+.+
T Consensus 33 v~~~~~~~~~~qe~lrq~v~~~l~~ir~qLE~qlNg~I~~vkgl~~~~e~------~P~~~Q~qw~~lA~a~~e~~~~lr 106 (297)
T COG3452 33 VHAWLQLRRVSQERLRQLVKQQLNIIRTQLETQLNGNIQLVKGLGKHWET------EPDMPQQQWELLARAVFEDYDGLR 106 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhheec------CCCchHHHhHHHHHHHhhccccce
Confidence 33333334444444444433333333344444445555555555555544 566999999988776666666666
Q ss_pred eeeeecccCchhHHHHHHHhcceeeecccCCCCCCCCCCCCCCCCccceeEeecCCccceeeeccccCcccHHHHHHHHh
Q 001941 181 GVAYAVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARA 260 (993)
Q Consensus 181 ~~~~~~~v~~~er~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~~~~~~~~~~g~D~~s~~~~r~~i~~Ar~ 260 (993)
.++=+|.. .+. -.||.+.|..++|+|+..+|.-+.++.+||+
T Consensus 107 ~I~vaP~~--------------VV~------------------------~~yPl~~neaa~gLDYrk~pqQ~~s~~~A~~ 148 (297)
T COG3452 107 NIAVAPSL--------------VVA------------------------RVYPLPGNEAAIGLDYRKNPQQRQSTSRARR 148 (297)
T ss_pred eeccCccc--------------EEE------------------------EEeecCCChhhcCcchhcCHHHHHHHHHHHh
Confidence 65522211 111 1588899999999999999999999999999
Q ss_pred cCCcccccceeecccCCceeEEEEEeeccCCCCCCChHHHHHhhcceeeeeeehHHHHHHH
Q 001941 261 SGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKL 321 (993)
Q Consensus 261 tg~~~~t~p~~l~~~~~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~~~~v~~l~~~l 321 (993)
.++.++|+|+.|+| ++-|++..+|++-.. +. -..++|+|.++||++.|.+..
T Consensus 149 ~k~tvvsGpVDL~Q-GgRgfi~rvPlf~gp--~~------~dRFwGvVs~V~dvDqL~~s~ 200 (297)
T COG3452 149 QKETVVSGPVDLVQ-GGRGFIGRVPLFMGP--PG------GDRFWGVVSGVFDVDQLYESV 200 (297)
T ss_pred hcceEEecceeecc-CCceEEEEEeeeeCC--CC------CCccceEEEEEEEHHHHHHHh
Confidence 99999999999997 567999999999742 11 235789999999999998875
No 64
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.09 E-value=1e-09 Score=125.94 Aligned_cols=189 Identities=21% Similarity=0.180 Sum_probs=124.1
Q ss_pred EEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEEEEeccCCcccccccCCCCCCCcc
Q 001941 765 VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSV 844 (993)
Q Consensus 765 v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~ 844 (993)
|..+.++.++++.+.. ..++.+++|..|+..++.... +.++.... +..++.+...+.+.....++ +....
T Consensus 15 v~~a~~g~~~l~~~~~--~~~~~~lld~~m~~~~~~~~~---~~lk~~~~---~~v~~t~~~~~~~~~~~~~~--~~~~~ 84 (435)
T COG3706 15 VATAKKGLIALAILLD--HKPDYKLLDVMMPGMDGFELC---RRLKAEPA---TVVMVTALDDSAPRVRGLKA--GADDF 84 (435)
T ss_pred hhhccchHHHHHHHhc--CCCCeEEeecccCCcCchhHH---HHHhcCCc---ceEEEEecCCCCcchhHHhh--hhhhh
Confidence 3447778888877644 578999999988776654433 33433321 22222333333333333333 56678
Q ss_pred cccCCcchHHHHHHHHHhcCCC------CCCcccCCCCcchhhhccCCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcC
Q 001941 845 IMKPLRSSMLAASLQRAMGVGN------KGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVER 918 (993)
Q Consensus 845 l~KPl~~~~l~~~l~~~l~~~~------~~~~~~~~~~~~~~~~~l~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~ 918 (993)
+.||+....+..-......... ............+.......++||||||+..++..+..+|...||++..+.+
T Consensus 85 l~~~~~~~~~~~r~~~l~~~k~~~de~~~~~~~~~~~~~~~~~~~~~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~ 164 (435)
T COG3706 85 LTKPVNDSQLFLRAKSLVRLKCSIDELRLREETGGELGVSPLLPEDAPKKILVVDDDATQRERLRRILQVEGFRVVEATD 164 (435)
T ss_pred ccCCCChHHHHHhhhhhccchhhHHHHhhccccccccccccccccccCceEEEEcCcHHHHHHHHHHHHhccceeeeecC
Confidence 8999877766543322211000 0000000000111100014579999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC---CceEEEE
Q 001941 919 GKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL---LIAILVW 964 (993)
Q Consensus 919 g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~---~~~~~~~ 964 (993)
+++|+..+.+ ..||+||.|+.||+|||+|+|+++|+.. .+|||+.
T Consensus 165 ~~~Al~~~~e-~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipii~~ 212 (435)
T COG3706 165 GEEALLQLAE-LPPDLVLLDANMPDMDGLELCTRLRQLERTRDIPIILL 212 (435)
T ss_pred HHHHHHHHhc-CCCcEEEEecCCCccCHHHHHHHHhcccccccccEEEE
Confidence 9999999964 5899999999999999999999999764 6788776
No 65
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.07 E-value=1.2e-08 Score=124.90 Aligned_cols=77 Identities=29% Similarity=0.493 Sum_probs=64.5
Q ss_pred ceeEEEEEEEcCCCCChhhH------------------------hhccCCccccCCCCcCcCCCccchHHHHHHHHHHcC
Q 001941 634 LINLIVSVEDTGQGIPLEAQ------------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMK 689 (993)
Q Consensus 634 ~~~l~i~V~DtG~GI~~e~~------------------------~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mg 689 (993)
+.++.|+|+|+|.||..+.. .-||.|-|.+....+ .-.|-|.||=+||+-++.+|
T Consensus 474 gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~Vt-dvSGRGVGMDVVk~~I~~Lg 552 (716)
T COG0643 474 GNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAEQVT-DVSGRGVGMDVVKTNIEQLG 552 (716)
T ss_pred CCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcchhhh-cccCCccCHHHHHHHHHHcC
Confidence 34689999999999998633 338999665544333 45799999999999999999
Q ss_pred CEEEEEEeCCCeEEEEEEEEeC
Q 001941 690 GEIGFVSIPNIGSTFTFTAVFG 711 (993)
Q Consensus 690 G~I~v~S~~g~GStF~~~lp~~ 711 (993)
|.|.+.|++|+||+|++.||+.
T Consensus 553 G~I~V~S~~G~GT~Fti~LPLT 574 (716)
T COG0643 553 GSISVSSEPGKGTTFTIRLPLT 574 (716)
T ss_pred CEEEEEecCCCCeEEEEecCcH
Confidence 9999999999999999999984
No 66
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.05 E-value=8.9e-10 Score=106.48 Aligned_cols=77 Identities=36% Similarity=0.517 Sum_probs=70.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHH-HHHHHhCCCC-CCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGK-KATELLMPPH-QFDACFMDIQMPEMDGYEMLPCFESF-LLIAIL 962 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~-eAl~~~~~~~-~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~ 962 (993)
+.+||+|||++.++..+...|...|+.+..+.+|. +|++.+. .+ .||+|++|++||+|||++++++||+. ..+|++
T Consensus 5 ~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~-~~~~~dlii~D~~mp~~~G~~~~~~l~~~~~~~pvv 83 (130)
T COG0784 5 GLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLR-ELPQPDLILLDINMPGMDGIELLRRLRARGPNIPVI 83 (130)
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHH-hCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEE
Confidence 56899999999999999999999999999999996 9999996 45 59999999999999999999999998 677753
Q ss_pred E
Q 001941 963 V 963 (993)
Q Consensus 963 ~ 963 (993)
+
T Consensus 84 ~ 84 (130)
T COG0784 84 L 84 (130)
T ss_pred E
Confidence 3
No 67
>PRK03660 anti-sigma F factor; Provisional
Probab=99.04 E-value=2.1e-09 Score=107.17 Aligned_cols=101 Identities=19% Similarity=0.359 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHHHHhcccC----CeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCC
Q 001941 549 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (993)
Q Consensus 549 D~~rL~QIL~NLL~NAiKfT~~----G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (993)
|...+.+++.|++.||++|+.. +.|.+++...
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~-------------------------------------------- 71 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIE-------------------------------------------- 71 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEC--------------------------------------------
Confidence 6678999999999999998632 4455543211
Q ss_pred CCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEE
Q 001941 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (993)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF 704 (993)
...+.++|.|+|.||++ ..+.|+||++.++ ...++|+||+|+++ +.+++.+++.++.||+|
T Consensus 72 ---------~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~----~~~~~GlGL~i~~~----~~~~i~~~~~~~~Gt~~ 132 (146)
T PRK03660 72 ---------EEELEITVRDEGKGIED--IEEAMQPLYTTKP----ELERSGMGFTVMES----FMDEVEVESEPGKGTTV 132 (146)
T ss_pred ---------CCEEEEEEEEccCCCCh--HHHhhCCCcccCC----CCCCccccHHHHHH----hCCeEEEEecCCCcEEE
Confidence 11478999999999986 5689999986432 12478999999875 45689999999999999
Q ss_pred EEEEEeCC
Q 001941 705 TFTAVFGN 712 (993)
Q Consensus 705 ~~~lp~~~ 712 (993)
+++.++..
T Consensus 133 ~i~~~~~~ 140 (146)
T PRK03660 133 RMKKYLKK 140 (146)
T ss_pred EEEEEecc
Confidence 99998864
No 68
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=98.99 E-value=1.7e-07 Score=102.28 Aligned_cols=189 Identities=13% Similarity=0.245 Sum_probs=135.9
Q ss_pred HHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHH
Q 001941 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (993)
Q Consensus 436 aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~l 515 (993)
.+.+...-+=.||-.-+++|.-.+.++..-..++..+...+.++.-+.++..-+..+|..-|-- ...+..+.+.
T Consensus 302 iRk~vARELHDeIGQnITAIr~Qa~ivkR~~~~~q~kqaas~Ie~LslrI~~svrqLL~rLRP~------~LDdL~l~qa 375 (497)
T COG3851 302 IRKDVARELHDEIGQNITAIRTQAGIVKRAADNAQVKQAASLIEQLSLRIYDSVRQLLGRLRPR------QLDDLTLEQA 375 (497)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhccCCHhHHhHHHHHHHHHHHHHHHHHHHHHhcCCc------ccccccHHHH
Confidence 3444444555678888999998888887765555556666667666666666677776554421 1223557788
Q ss_pred HHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCH---HHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchhhhh
Q 001941 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP---GRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592 (993)
Q Consensus 516 l~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~---~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i~~~ 592 (993)
+..+++.+. ..++||...++...+.. .-|+ --+.++...+++|-+||.+...|++..+..++
T Consensus 376 i~~l~~Em~--~~ergihcq~~~~~n~~---~ldet~rvTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e---------- 440 (497)
T COG3851 376 IRSLLREME--LEERGIHCQLDWRINET---ALDETQRVTLYRLCQELLNNICKHADASAVTIQLWQQDE---------- 440 (497)
T ss_pred HHHHHHHhh--hhhcCeEEEeccccCcc---cCCcceeEeHHHHHHHHHHHHHhccccceEEEEEeeCCc----------
Confidence 888887764 46778877766542211 1122 24778899999999999998888777654321
Q ss_pred cccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCC
Q 001941 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (993)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~ 672 (993)
.+.++|+|+|.|+|+.. +
T Consensus 441 -------------------------------------------~l~Lei~DdG~Gl~~~~-------------------~ 458 (497)
T COG3851 441 -------------------------------------------RLMLEIEDDGSGLPPGS-------------------G 458 (497)
T ss_pred -------------------------------------------EEEEEEecCCcCCCCCC-------------------C
Confidence 36799999999999642 3
Q ss_pred CccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEE
Q 001941 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709 (993)
Q Consensus 673 GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp 709 (993)
-+|.||.=.++=|.++||++.++| ..||...+++|
T Consensus 459 v~G~Gl~GmrERVsaLGG~ltlss--q~GTrviVnLP 493 (497)
T COG3851 459 VQGFGLTGMRERVSALGGTLTLSS--QHGTRVIVNLP 493 (497)
T ss_pred ccCcCcchHHHHHHHhCCceEEEe--ccCcEEEEecc
Confidence 478899999999999999999999 57899999998
No 69
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.98 E-value=1.8e-07 Score=107.79 Aligned_cols=90 Identities=24% Similarity=0.344 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCC
Q 001941 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFK 628 (993)
Q Consensus 549 D~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (993)
-..-+-+|+.--++||+||++.-++.|++...+
T Consensus 276 ~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~~----------------------------------------------- 308 (365)
T COG4585 276 AEDALFRIVQEALTNAIRHAQATEVRVTLERTD----------------------------------------------- 308 (365)
T ss_pred HHHHHHHHHHHHHHHHHhccCCceEEEEEEEcC-----------------------------------------------
Confidence 466788999999999999998888777764321
Q ss_pred CCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEE
Q 001941 629 SSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTA 708 (993)
Q Consensus 629 ~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~l 708 (993)
..+.++|.|+|.|.+++.. +.|+||.=.|+=++.+||++.+.|.||+||++++++
T Consensus 309 ------~~l~l~V~DnG~Gf~~~~~-------------------~~~~GL~~mreRv~~lgG~l~i~S~~g~Gt~i~i~l 363 (365)
T COG4585 309 ------DELRLEVIDNGVGFDPDKE-------------------GGGFGLLGMRERVEALGGTLTIDSAPGQGTTVTITL 363 (365)
T ss_pred ------CEEEEEEEECCcCCCcccc-------------------CCCcchhhHHHHHHHcCCEEEEEecCCCceEEEEec
Confidence 2478999999999987531 167999999999999999999999999999999999
Q ss_pred Ee
Q 001941 709 VF 710 (993)
Q Consensus 709 p~ 710 (993)
|+
T Consensus 364 Pl 365 (365)
T COG4585 364 PL 365 (365)
T ss_pred CC
Confidence 84
No 70
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.92 E-value=4.2e-07 Score=97.15 Aligned_cols=194 Identities=22% Similarity=0.303 Sum_probs=130.4
Q ss_pred HHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHH
Q 001941 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (993)
Q Consensus 436 aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~l 515 (993)
.+..++.-+.|-++|-|+.|.+++.+-.....++ ..++++..+.....| .++.+.|-.+ .....+...+
T Consensus 18 ~~~~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~sl-a~~He~L~~s---------~~~~~~~~~~ 86 (221)
T COG3920 18 EKELLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQSL-ALIHELLYKS---------GDDTWDFASY 86 (221)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHH-HHHHHHHhcC---------CcceEcHHHH
Confidence 3556777799999999999999988765544443 334444444433332 3345554332 1234567777
Q ss_pred HHHHHHHHhhhhhccCcEEEEEecCCCCceEEe-CHHHHHHHHHHHHHHHHhcc----cCCeEEEEEEEeecccccchhh
Q 001941 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIG-DPGRFRQIITNLMGNSIKFT----EKGHIFVTVYLVEEVVDSIEVE 590 (993)
Q Consensus 516 l~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~g-D~~rL~QIL~NLL~NAiKfT----~~G~I~v~v~~~e~~~~~i~i~ 590 (993)
++.+...+.+....+.+.+.....+.+ .+-. -..-|--|+.-|+.||+||. +.|.|.|++...+.
T Consensus 87 ~~~L~~~l~~~~~~~~~~~~~~~~~~~--~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~-------- 156 (221)
T COG3920 87 LELLASNLFPSYGGKDIRLILDSGPNV--FLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGD-------- 156 (221)
T ss_pred HHHHHHHHHHhcCCCCceEEEecCCce--EECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCC--------
Confidence 777776666544556677766555432 1211 23457889999999999996 36777776643211
Q ss_pred hhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCc
Q 001941 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 670 (993)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~ 670 (993)
.....+.|.|+|.|+|.+. |+
T Consensus 157 -------------------------------------------~~~~~l~v~deg~G~~~~~------~~---------- 177 (221)
T COG3920 157 -------------------------------------------GGRFLLTVWDEGGGPPVEA------PL---------- 177 (221)
T ss_pred -------------------------------------------CCeEEEEEEECCCCCCCCC------CC----------
Confidence 0035789999999999752 11
Q ss_pred CCCccchHHHHHHHH-HHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 671 HGGTGIGLSISKYLV-GRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 671 ~~GtGLGLsI~k~LV-e~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
...|+|+.+++.++ ++.||.+...+.. ||+|++++|...
T Consensus 178 -~~~g~G~~Lv~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~~~ 217 (221)
T COG3920 178 -SRGGFGLQLVERLVPEQLGGELEDERPD--GTEFRLRFPLSE 217 (221)
T ss_pred -CCCCcHHHHHHHHHHHHcCCeEEEEcCC--CEEEEEEEeccc
Confidence 24699999999999 8999999888754 999999999854
No 71
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=98.89 E-value=3e-09 Score=122.84 Aligned_cols=73 Identities=32% Similarity=0.411 Sum_probs=65.9
Q ss_pred eEEEEeCChHHHHHHHHHHH--hCCCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceE
Q 001941 888 KILIVDDNNVNLKVAAAGLK--RYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAI 961 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~--~~g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~ 961 (993)
+||||||++..|+-++.++. +.|++++ +|.||++|++.+. ...||+||+||.||+|||+++++.||+..+..-
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~-e~~pDiviTDI~MP~mdGLdLI~~ike~~p~~~ 78 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQ-ETQPDIVITDINMPGMDGLDLIKAIKEQSPDTE 78 (475)
T ss_pred eEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHH-hcCCCEEEEecCCCCCcHHHHHHHHHHhCCCce
Confidence 79999999999999999986 6788776 9999999999996 578999999999999999999999999665543
No 72
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=98.83 E-value=1.6e-08 Score=95.14 Aligned_cols=80 Identities=33% Similarity=0.415 Sum_probs=73.4
Q ss_pred EEEEeCChHHHHHHHHHHHhCCC-EEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEEEcc
Q 001941 889 ILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILVWKL 966 (993)
Q Consensus 889 ILIVdDn~~n~~vl~~~L~~~g~-~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~~~~ 966 (993)
||||||++..+..+...|+..|+ .+..+.++.+|++.+. ++.||+|++|+.||+++|.+++++||+.. ..|+|+.+-
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~-~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~ 79 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLK-KHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTD 79 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHH-HSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEES
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhc-ccCceEEEEEeeeccccccccccccccccccccEEEecC
Confidence 79999999999999999999999 9999999999999995 57899999999999999999999999887 888888854
Q ss_pred ccc
Q 001941 967 NLK 969 (993)
Q Consensus 967 ~~~ 969 (993)
+..
T Consensus 80 ~~~ 82 (112)
T PF00072_consen 80 EDD 82 (112)
T ss_dssp STS
T ss_pred CCC
Confidence 433
No 73
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.82 E-value=1.3e-06 Score=103.87 Aligned_cols=66 Identities=27% Similarity=0.302 Sum_probs=55.0
Q ss_pred eEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCC-ccchHHHHHHHHHHcCCE--EEEEEeCCCeEEEEEEEEeCC
Q 001941 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGG-TGIGLSISKYLVGRMKGE--IGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 636 ~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~G-tGLGLsI~k~LVe~mgG~--I~v~S~~g~GStF~~~lp~~~ 712 (993)
.+.++|.|+|+||+++....+.+. .++ .|+||+=+++.++.+-|. +.++|.+++||+..+.+|...
T Consensus 386 ~i~i~i~Dng~g~~~~~~~~~~~~-----------~~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~~ 454 (456)
T COG2972 386 VIQISISDNGPGIDEEKLEGLSTK-----------GENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKRE 454 (456)
T ss_pred EEEEEEeeCCCCCChhHHHHHHhh-----------ccCcccccHHHHHHHHHHeeCCcceeEeecCCCcEEEEEEeehhh
Confidence 578999999999999887665432 122 599999999999999887 689999999999999998743
No 74
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.81 E-value=1.4e-08 Score=117.60 Aligned_cols=83 Identities=33% Similarity=0.424 Sum_probs=74.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~~~ 965 (993)
.+||||||++..+..+..+|+..||+|..+.|+.+|++.+.. ..||+|++|+.||+|||++++++|++.. ..|||+.+
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~-~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~T 83 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSE-SPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMT 83 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc-CCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEEe
Confidence 479999999999999999999999999999999999999965 4799999999999999999999998765 78898885
Q ss_pred ccccc
Q 001941 966 LNLKI 970 (993)
Q Consensus 966 ~~~~~ 970 (993)
-..+|
T Consensus 84 g~g~i 88 (464)
T COG2204 84 GHGDI 88 (464)
T ss_pred CCCCH
Confidence 44443
No 75
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=98.78 E-value=1.5e-06 Score=100.22 Aligned_cols=184 Identities=22% Similarity=0.310 Sum_probs=127.8
Q ss_pred cccHhhHhHHHHHHHHHH----HHhc---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHH
Q 001941 443 TVSHEIRTPMNGVLGMLD----MLMD---TELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (993)
Q Consensus 443 ~vSHELRTPL~~I~g~le----lL~~---~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~l 515 (993)
+|+.||---|+-.+.++. +|.. .+..++.++.+..+....+.-..-+.++|.--|..- ..-++..-
T Consensus 375 tIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRltL-------~e~~L~~A 447 (574)
T COG3850 375 TIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRLTL-------QEAELPPA 447 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccCchHHH
Confidence 355566666555555543 3432 233345566777777777777777777777665432 22367777
Q ss_pred HHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCH---HHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchhhhh
Q 001941 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDP---GRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592 (993)
Q Consensus 516 l~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~---~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i~~~ 592 (993)
++++++.|+. +.++.+.++.. .|... -++ -.+-||+.-=++||+||+....|.|+++...
T Consensus 448 L~~~~~~f~~---qtg~~~~l~~q--lp~~~-lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~~----------- 510 (574)
T COG3850 448 LEQMLAEFSN---QTGITVTLDYQ--LPPRA-LPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQND----------- 510 (574)
T ss_pred HHHHHHHHHh---ccCCeEEEecc--CCCCC-CCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEecC-----------
Confidence 8888887764 45666666543 23221 233 3567899999999999998888888775211
Q ss_pred cccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCC
Q 001941 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (993)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~ 672 (993)
..+.+.|+|+|+|||+.. + .+
T Consensus 511 ------------------------------------------g~~~~~VeDnG~Gi~~~~-----e------------~~ 531 (574)
T COG3850 511 ------------------------------------------GQVTLTVEDNGVGIDEAA-----E------------PS 531 (574)
T ss_pred ------------------------------------------CeEEEEEeeCCcCCCCcc-----C------------CC
Confidence 246899999999999762 1 12
Q ss_pred CccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 001941 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (993)
Q Consensus 673 GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~ 710 (993)
| --||.|.+.=++.+||++.+++.+|+||++.+++|-
T Consensus 532 g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~~ 568 (574)
T COG3850 532 G-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFPP 568 (574)
T ss_pred C-CcchHHHHHHHHHhcCeEEEeecCCCCeEEEEEecc
Confidence 3 468999999999999999999999999999999863
No 76
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=98.78 E-value=1.6e-08 Score=111.55 Aligned_cols=79 Identities=32% Similarity=0.482 Sum_probs=70.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc----CCceE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF----LLIAI 961 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~----~~~~~ 961 (993)
..+||+|||.+.++..+...|+..||++..+.||++|++... .+.+|+||+|++||+|||+|+|++|++. -.+|+
T Consensus 14 ~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~-~~~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ip~ 92 (360)
T COG3437 14 KLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQ-EEPPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRIPV 92 (360)
T ss_pred cceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhc-ccCCceEEeeccCCCccHHHHHHHHHhcCCcccccce
Confidence 358999999999999999999999999999999999999996 4679999999999999999999999983 34566
Q ss_pred EEEc
Q 001941 962 LVWK 965 (993)
Q Consensus 962 ~~~~ 965 (993)
++-+
T Consensus 93 i~lT 96 (360)
T COG3437 93 ILLT 96 (360)
T ss_pred EEEe
Confidence 5543
No 77
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.73 E-value=1.5e-07 Score=95.84 Aligned_cols=103 Identities=18% Similarity=0.272 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHHHHhcccC----CeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCC
Q 001941 549 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (993)
Q Consensus 549 D~~rL~QIL~NLL~NAiKfT~~----G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (993)
|...++.++..++.||++|... |.|.|++...
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~-------------------------------------------- 74 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIY-------------------------------------------- 74 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEE--------------------------------------------
Confidence 5667889999999999999843 4555554321
Q ss_pred CCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEE
Q 001941 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (993)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF 704 (993)
...+.|.|+|+|+|++++.....|.||+...+.. ...+.|+||+++++|++. +.+.+ +.|++|
T Consensus 75 ---------~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~--~~~~~G~GL~li~~l~d~----v~~~~--~~G~~v 137 (161)
T PRK04069 75 ---------EDRLEIVVADNGVSFDYETLKSKLGPYDISKPIE--DLREGGLGLFLIETLMDD----VTVYK--DSGVTV 137 (161)
T ss_pred ---------CCEEEEEEEECCcCCChHHhccccCCCCCCCccc--ccCCCceeHHHHHHHHHh----EEEEc--CCCcEE
Confidence 1247899999999999999999999987654332 234679999999999986 66665 468999
Q ss_pred EEEEEeCC
Q 001941 705 TFTAVFGN 712 (993)
Q Consensus 705 ~~~lp~~~ 712 (993)
+++-.+..
T Consensus 138 ~~~k~~~~ 145 (161)
T PRK04069 138 SMTKYINR 145 (161)
T ss_pred EEEEEcCc
Confidence 98876654
No 78
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.64 E-value=7.9e-08 Score=107.45 Aligned_cols=77 Identities=25% Similarity=0.346 Sum_probs=71.5
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCC--CEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVW 964 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g--~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~ 964 (993)
.+||||||....|++++.+|...| ..|-++.||.+|++++. +..||+|.||+.||.|||++++++|-+..+.||++-
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~-~~~PDVi~ld~emp~mdgl~~l~~im~~~p~pVimv 80 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVK-KLKPDVITLDVEMPVMDGLEALRKIMRLRPLPVIMV 80 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHH-hcCCCEEEEecccccccHHHHHHHHhcCCCCcEEEE
Confidence 379999999999999999999988 56669999999999996 578999999999999999999999999999999765
No 79
>PLN03029 type-a response regulator protein; Provisional
Probab=98.63 E-value=1.3e-07 Score=101.44 Aligned_cols=80 Identities=26% Similarity=0.345 Sum_probs=70.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCC-------------------CCCcEEEEcCCCCCCCH
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP-------------------HQFDACFMDIQMPEMDG 946 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~-------------------~~~DlIlmDi~MP~mdG 946 (993)
..+||||||+..++..+..+|+..||.+.++.+|.+|++.+... ..||+||+|+.||+|||
T Consensus 8 ~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~G 87 (222)
T PLN03029 8 QFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMTG 87 (222)
T ss_pred CccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCCH
Confidence 45899999999999999999999999999999999999988421 13679999999999999
Q ss_pred HHHHHHHhcc---CCceEEEEc
Q 001941 947 YEMLPCFESF---LLIAILVWK 965 (993)
Q Consensus 947 ~e~~~~Ir~~---~~~~~~~~~ 965 (993)
+++++.||+. ..+|+|+..
T Consensus 88 ~e~l~~ir~~~~~~~ipvIils 109 (222)
T PLN03029 88 YDLLKKIKESSSLRNIPVVIMS 109 (222)
T ss_pred HHHHHHHHhccccCCCcEEEEe
Confidence 9999999986 468887764
No 80
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=98.61 E-value=2e-07 Score=99.13 Aligned_cols=80 Identities=29% Similarity=0.312 Sum_probs=68.2
Q ss_pred eEEEEeCChHHHHHHHHHHHhCC-CEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhc-cCCceEEEE
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYG-AAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFES-FLLIAILVW 964 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g-~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~-~~~~~~~~~ 964 (993)
+||||||.+..+.-+..+|+..+ ++|+ .+.||.++++.+. ...||+|+||+.||+|||+|+++.||+ ....+|++.
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~-~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvl 80 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAR-ELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVL 80 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhh-hcCCCEEEEcCCCCCCChHHHHHHHHHHCCCCcEEEE
Confidence 59999999999999999998766 7765 6667999999974 578999999999999999999999994 445588877
Q ss_pred cccc
Q 001941 965 KLNL 968 (993)
Q Consensus 965 ~~~~ 968 (993)
+...
T Consensus 81 t~~~ 84 (211)
T COG2197 81 TAHD 84 (211)
T ss_pred eccC
Confidence 5443
No 81
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=98.61 E-value=1.2e-07 Score=120.09 Aligned_cols=79 Identities=28% Similarity=0.489 Sum_probs=71.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCC----ceE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLL----IAI 961 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~----~~~ 961 (993)
+.+|||||||+.++..+..+|+..||.+.++.+|.+|++.+. .+.||+||||++||+|||++++++||+... .|+
T Consensus 525 ~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~-~~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~i 603 (779)
T PRK11091 525 ALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFD-PDEYDLVLLDIQLPDMTGLDIARELRERYPREDLPPL 603 (779)
T ss_pred ccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhh-cCCCCEEEEcCCCCCCCHHHHHHHHHhccccCCCCcE
Confidence 468999999999999999999999999999999999999995 578999999999999999999999998762 377
Q ss_pred EEEc
Q 001941 962 LVWK 965 (993)
Q Consensus 962 ~~~~ 965 (993)
|+.+
T Consensus 604 i~~t 607 (779)
T PRK11091 604 VALT 607 (779)
T ss_pred EEEE
Confidence 6664
No 82
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=98.56 E-value=1.1e-05 Score=91.74 Aligned_cols=129 Identities=22% Similarity=0.350 Sum_probs=90.6
Q ss_pred EeecHHHHHHHHHHHHhhh-hh-ccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcc-----cCCeEEEEEEEe
Q 001941 508 VSFNLRAILDDVLSLFSGK-SQ-DKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-----EKGHIFVTVYLV 580 (993)
Q Consensus 508 ~~~dL~~ll~~vl~~~~~~-a~-~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT-----~~G~I~v~v~~~ 580 (993)
..+.|.+-++.+-...+-. |+ ...+.+.+++++..... .=|. -++.-|+.|||||. +.|.|.|+|...
T Consensus 415 ~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~--~iP~---filQPLVENAIKHG~~~~~~~g~V~I~V~~~ 489 (557)
T COG3275 415 EIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQV--QIPS---FILQPLVENAIKHGISQLKDTGRVTISVEKE 489 (557)
T ss_pred eEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhhc--cCch---hhhhHHHHHHHHhcccchhcCCceEEEEEEe
Confidence 3467777777776655432 22 22345555555443211 1233 24667899999995 457777776432
Q ss_pred ecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCc
Q 001941 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (993)
Q Consensus 581 e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (993)
+ ..+++.|+|+|.||+++
T Consensus 490 d-----------------------------------------------------~~l~i~VeDng~li~p~--------- 507 (557)
T COG3275 490 D-----------------------------------------------------ADLRIEVEDNGGLIQPD--------- 507 (557)
T ss_pred C-----------------------------------------------------CeEEEEEecCCCCcCCC---------
Confidence 2 23789999999999987
Q ss_pred cccCCCCcCcCCCccchHHHHHHHHHHcCC---EEEEEEeCCCeEEEEEEEEeCC
Q 001941 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKG---EIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 661 ~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG---~I~v~S~~g~GStF~~~lp~~~ 712 (993)
...|+|+||+.+.+=++.+=| -+.++|.+..||+++|.+|+..
T Consensus 508 ---------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~ 553 (557)
T COG3275 508 ---------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQR 553 (557)
T ss_pred ---------CCCCCChHHHHHHHHHHHhcCccccceEEeccCCCcEEEEEecCcc
Confidence 124899999999999988877 7899999999999999999864
No 83
>PRK11173 two-component response regulator; Provisional
Probab=98.52 E-value=4.9e-07 Score=97.05 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=72.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~ 965 (993)
.+||+|||++..+..+...|+..|+.+..+.++.+|++.+. ...||+|++|+.||++||+++++.||+....|+|+..
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~~~~pii~lt 81 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-ENDINLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-hCCCCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 48999999999999999999999999999999999999885 4679999999999999999999999998888988764
No 84
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=98.52 E-value=5e-07 Score=95.77 Aligned_cols=77 Identities=21% Similarity=0.325 Sum_probs=71.8
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEc
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWK 965 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~ 965 (993)
+||+|||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.||+++|+++++.||+....|+|+..
T Consensus 3 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt 79 (225)
T PRK10529 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-TRKPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLS 79 (225)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 7999999999999999999999999999999999999885 4679999999999999999999999998899998874
No 85
>PRK13856 two-component response regulator VirG; Provisional
Probab=98.48 E-value=6.1e-07 Score=96.72 Aligned_cols=78 Identities=17% Similarity=0.301 Sum_probs=72.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~ 965 (993)
++||+|||++..+..+...|+..||.+..+.++.++++.+. ...||+|++|+.||.++|+++++.||+....|+++..
T Consensus 2 ~~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~l~~~~g~~l~~~i~~~~~~pii~lt 79 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLA-SETVDVVVVDLNLGREDGLEIVRSLATKSDVPIIIIS 79 (241)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEE
Confidence 37999999999999999999999999999999999999885 4679999999999999999999999998889998774
No 86
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=98.46 E-value=5.6e-07 Score=102.66 Aligned_cols=77 Identities=27% Similarity=0.344 Sum_probs=69.9
Q ss_pred eEEEEeCChHHHHHHHHHH-HhCCCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEc
Q 001941 888 KILIVDDNNVNLKVAAAGL-KRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWK 965 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L-~~~g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~ 965 (993)
+||||||++..+..+..+| +..|+++. .+.++.+|++.+. ...||+|++|+.||+|||++++++||+...+|+++..
T Consensus 2 ~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~-~~~pDlVllD~~mp~~~G~e~l~~l~~~~~~pvivvs 80 (337)
T PRK12555 2 RIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCA-AQPPDVILMDLEMPRMDGVEATRRIMAERPCPILIVT 80 (337)
T ss_pred EEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-ccCCCEEEEcCCCCCCCHHHHHHHHHHHCCCcEEEEe
Confidence 7999999999999999999 46688886 7899999999985 5789999999999999999999999999889997764
No 87
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=98.46 E-value=7.6e-07 Score=95.66 Aligned_cols=77 Identities=25% Similarity=0.312 Sum_probs=71.5
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEc
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWK 965 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~ 965 (993)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+. ...||+|++|+.||+++|+++++.||+....|+|+..
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-~~~~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~ 79 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATIL-REQPDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLT 79 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 7999999999999999999999999999999999999985 5679999999999999999999999998788887764
No 88
>PRK15029 arginine decarboxylase; Provisional
Probab=98.46 E-value=4.3e-07 Score=111.88 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=70.7
Q ss_pred eEEEEeCChH--------HHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHH----HHHHHHhc
Q 001941 888 KILIVDDNNV--------NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY----EMLPCFES 955 (993)
Q Consensus 888 ~ILIVdDn~~--------n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~----e~~~~Ir~ 955 (993)
+|||||||.. .++.+...|+..||+|..+.++.+|++.+.....||+||+|++||++||+ ++++.||+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~IR~ 81 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHHHh
Confidence 6999999995 68999999999999999999999999999532479999999999999998 99999997
Q ss_pred c-CCceEEEEcc
Q 001941 956 F-LLIAILVWKL 966 (993)
Q Consensus 956 ~-~~~~~~~~~~ 966 (993)
. ..+|||+-+-
T Consensus 82 ~~~~iPIIlLTa 93 (755)
T PRK15029 82 RQQNVPVFLLGD 93 (755)
T ss_pred hCCCCCEEEEEc
Confidence 4 5899988743
No 89
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.45 E-value=4.7e-05 Score=82.77 Aligned_cols=183 Identities=20% Similarity=0.246 Sum_probs=120.7
Q ss_pred hHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeE---eecHHHHHHHHHHHHh
Q 001941 448 IRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAV---SFNLRAILDDVLSLFS 524 (993)
Q Consensus 448 LRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~---~~dL~~ll~~vl~~~~ 524 (993)
|..-|-+..-.++++...-.++.+. ....+.+++.+|..-|+++..+|.- +.+. ..-|..-++-.++.|+
T Consensus 262 IsQ~LVs~k~~lela~~ql~~p~~~-a~~aieKaa~aL~~Ai~EVRRiSH~------LRP~~LDDLGL~aALe~L~~~f~ 334 (459)
T COG4564 262 ISQNLVSVKCALELAARQLNPPKGG-AHPAIEKAADALNGAIKEVRRISHD------LRPRALDDLGLTAALEALLEDFK 334 (459)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCC-CchhhhhHHHHHHHHHHHHHHhccc------cChhhhhhhhHHHHHHHHHHHhh
Confidence 4455666777778776653333221 1245666778888888888766541 2221 1224445555555554
Q ss_pred hhhhccCcEEEEEecCCCCceEE-eCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchhhhhcccccCcCCCC
Q 001941 525 GKSQDKGVELAVYISDRVPETLI-GDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGY 603 (993)
Q Consensus 525 ~~a~~k~I~l~~~i~~~~p~~v~-gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~ 603 (993)
+..|+++.+..+. .|..+. .-...|.+|...-++|-=+|+..-. |++.+..
T Consensus 335 ---~~tg~~itle~~~-~p~~l~~e~~talyRv~QEaltNIErHa~Atr--v~ill~~---------------------- 386 (459)
T COG4564 335 ---ERTGIEITLEFDT-QPGKLKPEVATALYRVVQEALTNIERHAGATR--VTILLQQ---------------------- 386 (459)
T ss_pred ---hccCeEEEEEecC-CcccCCcHHHHHHHHHHHHHHHHHHhhcCCeE--EEEEecc----------------------
Confidence 6778888776643 233332 1245788888888889888874433 3333211
Q ss_pred CccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHH
Q 001941 604 PVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKY 683 (993)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~ 683 (993)
....+.+.|.|+|+|++.+... ..-.||||--.++
T Consensus 387 -----------------------------~~d~vql~vrDnG~GF~~~~~~----------------~~~~GiGLRNMrE 421 (459)
T COG4564 387 -----------------------------MGDMVQLMVRDNGVGFSVKEAL----------------QKRHGIGLRNMRE 421 (459)
T ss_pred -----------------------------CCcceEEEEecCCCCccchhhc----------------cCccccccccHHH
Confidence 1224789999999999865321 1226999999999
Q ss_pred HHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 001941 684 LVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (993)
Q Consensus 684 LVe~mgG~I~v~S~~g~GStF~~~lp~~ 711 (993)
=+...||++.++|.|. ||..++.+|..
T Consensus 422 Rma~~GG~~~v~s~p~-GTel~v~Lp~~ 448 (459)
T COG4564 422 RMAHFGGELEVESSPQ-GTELTVLLPLD 448 (459)
T ss_pred HHHHhCceEEEEecCC-CcEEEEEecch
Confidence 9999999999999987 99999999985
No 90
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.45 E-value=1.7e-05 Score=87.88 Aligned_cols=148 Identities=22% Similarity=0.317 Sum_probs=107.8
Q ss_pred eecHHHHHHHHHHHHhhhhhccCc---EEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccc-----CCe----EEEE
Q 001941 509 SFNLRAILDDVLSLFSGKSQDKGV---ELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-----KGH----IFVT 576 (993)
Q Consensus 509 ~~dL~~ll~~vl~~~~~~a~~k~I---~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~-----~G~----I~v~ 576 (993)
..++.++|+++.+..+..+..+=+ ++.+.-+......+ .=|.-|.-++.-|+.||.++|- +|. |.|.
T Consensus 215 ~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~~~v-yvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~ 293 (414)
T KOG0787|consen 215 RCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALSFTV-YVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVT 293 (414)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccccCcc-ccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEE
Confidence 468999999998877766655432 23333333332221 3588999999999999999982 232 3333
Q ss_pred EEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhc
Q 001941 577 VYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRI 656 (993)
Q Consensus 577 v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~I 656 (993)
|.. +...+.|.|+|.|-|||.+..+++
T Consensus 294 V~~-----------------------------------------------------gdeDl~ikISDrGGGV~~~~~drl 320 (414)
T KOG0787|consen 294 VAK-----------------------------------------------------GDEDLLIKISDRGGGVPHRDIDRL 320 (414)
T ss_pred Eec-----------------------------------------------------CCcceEEEEecCCCCcChhHHHHH
Confidence 321 111367889999999999999999
Q ss_pred cCCccccCCCCcC------cCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 001941 657 FTPFMQVGPSISR------THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (993)
Q Consensus 657 FepF~q~~~s~s~------~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~ 710 (993)
|.=-|.+.+..+. .-.|.|-||.|||...+..||++.+.|-.|-||-..+.+-.
T Consensus 321 f~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~ 380 (414)
T KOG0787|consen 321 FSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDVYIYLKA 380 (414)
T ss_pred HhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHHhCCCeeEEeeeccccceEEEecc
Confidence 9876655433222 22489999999999999999999999999999999998854
No 91
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.45 E-value=1.9e-06 Score=87.54 Aligned_cols=101 Identities=19% Similarity=0.287 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHhcccC----CeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCC
Q 001941 550 PGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 625 (993)
Q Consensus 550 ~~rL~QIL~NLL~NAiKfT~~----G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (993)
...+.-++..++.||++|+.. |.|.|.+...
T Consensus 40 ~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~--------------------------------------------- 74 (159)
T TIGR01924 40 IEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIY--------------------------------------------- 74 (159)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEe---------------------------------------------
Confidence 446888999999999999743 4566654321
Q ss_pred CCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEE
Q 001941 626 PFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFT 705 (993)
Q Consensus 626 ~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~ 705 (993)
...+.+.|+|+|+|++++..+..|.|+...++.. ...+.|+||+|+++|++ ++.+.+ +.|++++
T Consensus 75 --------~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~--~~~~~G~GL~Li~~L~D----~v~~~~--~~G~~l~ 138 (159)
T TIGR01924 75 --------EDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPID--DLREGGLGLFLIETLMD----EVEVYE--DSGVTVA 138 (159)
T ss_pred --------CCEEEEEEEEcccccCchhhccccCCCCCCCCcc--cCCCCccCHHHHHHhcc----EEEEEe--CCCEEEE
Confidence 1247899999999999998888888876543322 23467999999999998 677776 4578888
Q ss_pred EEEEeC
Q 001941 706 FTAVFG 711 (993)
Q Consensus 706 ~~lp~~ 711 (993)
++..+.
T Consensus 139 l~k~~~ 144 (159)
T TIGR01924 139 MTKYLN 144 (159)
T ss_pred EEEEEc
Confidence 876554
No 92
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=98.44 E-value=9.2e-07 Score=94.80 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=69.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHh-CCCE-EEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKR-YGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~-~g~~-v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~ 963 (993)
.+||||||++..+..+...|+. .|+. +..+.++.+|++.+. ...||+|++|+.||++||+++++.||+. ...|||+
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~-~~~pdlvllD~~mp~~~gle~~~~l~~~~~~~~iiv 83 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIE-RFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVF 83 (225)
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEE
Confidence 5899999999999999999986 4785 678999999999995 5779999999999999999999999984 4577877
Q ss_pred Eccc
Q 001941 964 WKLN 967 (993)
Q Consensus 964 ~~~~ 967 (993)
..-.
T Consensus 84 ls~~ 87 (225)
T PRK10046 84 TTAA 87 (225)
T ss_pred EEcC
Confidence 6433
No 93
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=98.44 E-value=1.1e-06 Score=92.99 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=72.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~ 965 (993)
.+||+|||++..+..+...|...|+.+..+.++.+|++.+. ...||+|++|+.||.++|+++++.||+....|+|+..
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l~ 80 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQ-NQHVDLILLDINLPGEDGLMLTRELRSRSTVGIILVT 80 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEEE
Confidence 47999999999999999999999999999999999999885 4679999999999999999999999998889998864
No 94
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=98.41 E-value=1.2e-06 Score=93.01 Aligned_cols=76 Identities=25% Similarity=0.394 Sum_probs=70.1
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEc
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWK 965 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~ 965 (993)
+||||||++..+..+...|+..|+.+..+.++.++++.+. ..||+|++|+.||+++|+++++.||+....|+|+..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~--~~~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt 78 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD--DSIDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLT 78 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh--cCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE
Confidence 7999999999999999999999999999999999999874 369999999999999999999999998778887764
No 95
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=98.40 E-value=4.6e-07 Score=96.85 Aligned_cols=76 Identities=30% Similarity=0.412 Sum_probs=69.1
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCC-ceEEEE
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLL-IAILVW 964 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~-~~~~~~ 964 (993)
+|+||||+......+..+|++.|..+-.++...+|++.+. .+.||+||+|+.||.|+|+|+.+++|..+. +|||.-
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le-~~kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLE-VFKPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred cEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHH-hcCCCEEEEEeecCCccHHHHHHHHHHhhccCcEEEE
Confidence 7999999999999999999999999999999999999995 688999999999999999999999998764 455543
No 96
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=98.39 E-value=1.4e-06 Score=92.31 Aligned_cols=77 Identities=27% Similarity=0.411 Sum_probs=70.7
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
+||+|||++..+..+...|+..|+.+..+.++.+|++.+. .+.||+|++|+.||+++|++++++||+. ..+|+++..
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~-~~~~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~ls 79 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLN-EHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLT 79 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 6999999999999999999999999999999999999885 4679999999999999999999999985 578887763
No 97
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=98.37 E-value=1.8e-06 Score=92.58 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=71.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVW 964 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~ 964 (993)
..+|||+|||+..+..+...|+..|+++..+.++.++++.+. .+.||+||+|+.||.++|+++++.||+. ...|+++.
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~l 83 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLT-RESFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIML 83 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 358999999999999999999999999999999999999885 4679999999999999999999999976 46888776
Q ss_pred c
Q 001941 965 K 965 (993)
Q Consensus 965 ~ 965 (993)
.
T Consensus 84 s 84 (239)
T PRK09468 84 T 84 (239)
T ss_pred E
Confidence 3
No 98
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.36 E-value=1.2e-06 Score=73.39 Aligned_cols=64 Identities=44% Similarity=0.760 Sum_probs=56.7
Q ss_pred HHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001941 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVES 500 (993)
Q Consensus 437 Ks~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skies 500 (993)
+.+|++.++||+||||++|.+.++.+.+...+++..++++.+..+++++..++++++++++.+.
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4578999999999999999999999887555666688999999999999999999999998765
No 99
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=98.35 E-value=1.1e-06 Score=90.61 Aligned_cols=76 Identities=25% Similarity=0.396 Sum_probs=64.7
Q ss_pred eEEEEeCChHHHHHHHHHHHh-CCCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEEE
Q 001941 888 KILIVDDNNVNLKVAAAGLKR-YGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILVW 964 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~-~g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~~ 964 (993)
+|||||||+....+-..+++. .||.++ +|.++++|..++. ...|||||+|+-||+.+|+++++.||+.. .+-||+-
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~-~~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~i 80 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIE-EFKPDLILLDIYMPDGNGIELLPELRSQHYPVDVIVI 80 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHH-hhCCCEEEEeeccCCCccHHHHHHHHhcCCCCCEEEE
Confidence 699999999999999999986 478766 8999999999995 46789999999999999999999999543 3444443
No 100
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=98.35 E-value=2.2e-06 Score=90.48 Aligned_cols=77 Identities=23% Similarity=0.472 Sum_probs=71.4
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEc
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWK 965 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~ 965 (993)
+||+|||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.||+++|+++++.||+....|+|+..
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls 78 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL-KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLT 78 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 6999999999999999999999999999999999999885 4679999999999999999999999998888988764
No 101
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=98.34 E-value=2.2e-06 Score=90.26 Aligned_cols=78 Identities=26% Similarity=0.356 Sum_probs=70.5
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~~ 963 (993)
.+||||||++..+..+...|+..|+++..+.++.++++.+. .+.||+|++|+.||+++|+++++.||+. ...|+|+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii~ 81 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLIN-ERGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPIIM 81 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHH-hcCCCEEEEECCCCCCcHHHHHHHHHccccCCCCCEEE
Confidence 57999999999999999999999999999999999999885 4679999999999999999999999985 4678877
Q ss_pred Ec
Q 001941 964 WK 965 (993)
Q Consensus 964 ~~ 965 (993)
..
T Consensus 82 ls 83 (226)
T TIGR02154 82 LT 83 (226)
T ss_pred Ee
Confidence 64
No 102
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=98.34 E-value=2.3e-06 Score=90.94 Aligned_cols=78 Identities=26% Similarity=0.449 Sum_probs=70.7
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEcc
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWKL 966 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~~ 966 (993)
+||||||++..+..+...|+..|+.+..+.++.++++.+. ...||+|++|+.||+++|+++++.||+. ...|+++..-
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~ls~ 80 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAM-TGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTA 80 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEEc
Confidence 6999999999999999999999999999999999999885 4679999999999999999999999986 4678887643
No 103
>PRK14084 two-component response regulator; Provisional
Probab=98.34 E-value=2.2e-06 Score=92.84 Aligned_cols=76 Identities=25% Similarity=0.348 Sum_probs=65.6
Q ss_pred eEEEEeCChHHHHHHHHHHHhCC-C-EEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEE
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYG-A-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVW 964 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g-~-~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~ 964 (993)
+|||+||++..+..+..+|+..+ + .+..+.++++|++.+. .+.||++|+|+.||++||+++++.||+....|.++.
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~-~~~~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI~ 79 (246)
T PRK14084 2 KALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALL-INQYDIIFLDINLMDESGIELAAKIQKMKEPPAIIF 79 (246)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEE
Confidence 69999999999999999999765 4 5678999999999885 467999999999999999999999998766554433
No 104
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=98.32 E-value=2.1e-06 Score=98.70 Aligned_cols=78 Identities=23% Similarity=0.317 Sum_probs=70.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHhC-CCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVW 964 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~ 964 (993)
.+||||||+..++..+...|+.. |+.+. .+.++.+|++.+. ...||+|++|+.||+|||++++++||+....|+|+.
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~-~~~~DlVllD~~mp~~dgle~l~~i~~~~~~piIvl 82 (354)
T PRK00742 4 IRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIK-KLNPDVITLDVEMPVMDGLDALEKIMRLRPTPVVMV 82 (354)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHh-hhCCCEEEEeCCCCCCChHHHHHHHHHhCCCCEEEE
Confidence 48999999999999999999876 88887 8899999999885 567999999999999999999999998888898776
Q ss_pred c
Q 001941 965 K 965 (993)
Q Consensus 965 ~ 965 (993)
.
T Consensus 83 s 83 (354)
T PRK00742 83 S 83 (354)
T ss_pred e
Confidence 3
No 105
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=98.32 E-value=2.9e-06 Score=90.27 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=70.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~~ 963 (993)
++||||||++..+..+...|+..|+++..+.++.+|++.+. ...||+|++|+.||+++|+++++.||+. ...|+|+
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi~ 81 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVM 81 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEEE
Confidence 57999999999999999999999999999999999999885 4679999999999999999999999986 4678877
Q ss_pred Ec
Q 001941 964 WK 965 (993)
Q Consensus 964 ~~ 965 (993)
..
T Consensus 82 ls 83 (229)
T PRK10161 82 LT 83 (229)
T ss_pred EE
Confidence 63
No 106
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=98.31 E-value=2.8e-06 Score=89.33 Aligned_cols=77 Identities=26% Similarity=0.480 Sum_probs=69.9
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
+||||||++..+..+...|+..|+.+..+.++.++++.+. ...||+|++|+.||+++|+++++.||+. ...|+|+..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~ls 79 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLE-SGHYSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLILT 79 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEE
Confidence 6999999999999999999999999999999999999885 4679999999999999999999999975 567887763
No 107
>PF14501 HATPase_c_5: GHKL domain
Probab=98.27 E-value=1.4e-05 Score=74.57 Aligned_cols=94 Identities=26% Similarity=0.359 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHHHHhccc----CCeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCC
Q 001941 549 DPGRFRQIITNLMGNSIKFTE----KGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (993)
Q Consensus 549 D~~rL~QIL~NLL~NAiKfT~----~G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (993)
|+..|..+|.||++||+++.. +..|.+.+..
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~--------------------------------------------- 36 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIRE--------------------------------------------- 36 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEe---------------------------------------------
Confidence 556788999999999999973 2344443321
Q ss_pred CCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEE
Q 001941 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (993)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF 704 (993)
....+.|.|+++-.+ +. ++++ +.+...++.|+||..++++++.++|.+.+++..+ .|
T Consensus 37 --------~~~~~~i~i~N~~~~---~~-~~~~--------~~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~~~---~f 93 (100)
T PF14501_consen 37 --------ENGFLVIIIENSCEK---EI-EKLE--------SSSSKKKGHGIGLKNVKKILEKYNGSLSIESEDG---IF 93 (100)
T ss_pred --------cCCEEEEEEEECCCC---cc-cccc--------ccccCCCCCCcCHHHHHHHHHHCCCEEEEEEECC---EE
Confidence 112477889998544 11 2222 1234567899999999999999999999888754 56
Q ss_pred EEEEEe
Q 001941 705 TFTAVF 710 (993)
Q Consensus 705 ~~~lp~ 710 (993)
++++-+
T Consensus 94 ~~~i~i 99 (100)
T PF14501_consen 94 TVKIVI 99 (100)
T ss_pred EEEEEE
Confidence 666543
No 108
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=98.26 E-value=3.8e-06 Score=92.05 Aligned_cols=78 Identities=28% Similarity=0.381 Sum_probs=66.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHhC-CCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCC---ceE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLL---IAI 961 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~---~~~ 961 (993)
.+|||||||+..+..+...|+.. ++.+. ++.+|.+|++.+. ...||+|++|+.||+|||+++++.||+... .|+
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~-~~~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~~i 81 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIK-EQQPDVVVLDIIMPHLDGIGVLEKLNEIELSARPRV 81 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhhccccCCeE
Confidence 47999999999999999999864 55554 7899999999985 567999999999999999999999998654 567
Q ss_pred EEEc
Q 001941 962 LVWK 965 (993)
Q Consensus 962 ~~~~ 965 (993)
|+.+
T Consensus 82 I~lt 85 (262)
T TIGR02875 82 IMLS 85 (262)
T ss_pred EEEe
Confidence 7764
No 109
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=98.25 E-value=7.8e-06 Score=85.88 Aligned_cols=80 Identities=24% Similarity=0.432 Sum_probs=71.3
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEcc
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWKL 966 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~~ 966 (993)
+||||||++..+..+...|+..|+++..+.++.++++.+. .+.||+|++|+.||+++|+++++.||+. ...|+|+..-
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~lt~ 80 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALY-SAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA 80 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEEC
Confidence 6999999999999999999999999999999999999885 4679999999999999999999999986 4678887743
Q ss_pred cc
Q 001941 967 NL 968 (993)
Q Consensus 967 ~~ 968 (993)
..
T Consensus 81 ~~ 82 (219)
T PRK10336 81 RD 82 (219)
T ss_pred CC
Confidence 33
No 110
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=98.24 E-value=4.8e-06 Score=88.38 Aligned_cols=77 Identities=23% Similarity=0.293 Sum_probs=69.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCC--CCHHHHHHHHhccC-CceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE--MDGYEMLPCFESFL-LIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~--mdG~e~~~~Ir~~~-~~~~~~ 963 (993)
++||||||++..+..+...|+..|+++..+.++.+++..+. ...||+|++|+.||+ ++|+++++.||+.. ..|+|+
T Consensus 1 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 1 KRIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFR-QRLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHH-hCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 47999999999999999999999999999999999999885 467999999999998 58999999999864 578877
Q ss_pred E
Q 001941 964 W 964 (993)
Q Consensus 964 ~ 964 (993)
.
T Consensus 80 l 80 (227)
T TIGR03787 80 L 80 (227)
T ss_pred E
Confidence 6
No 111
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=98.21 E-value=5.2e-06 Score=89.82 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=66.6
Q ss_pred eEEEEeCChHHHHHHHHHHHh-CCCEEE-EEcCHHHHHHHhCC-CCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEE
Q 001941 888 KILIVDDNNVNLKVAAAGLKR-YGAAVV-CVERGKKATELLMP-PHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILV 963 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~-~g~~v~-~a~~g~eAl~~~~~-~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~ 963 (993)
+||||||++..+..+..+|+. .|+.+. .+.++.+|++.+.. ...||+||+|+.||+|||+++++.||+.. .+|+|+
T Consensus 3 ~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI~ 82 (239)
T PRK10430 3 NVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVIV 82 (239)
T ss_pred eEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEEE
Confidence 799999999999999999986 477654 78899999988742 35699999999999999999999999764 578877
Q ss_pred Ecc
Q 001941 964 WKL 966 (993)
Q Consensus 964 ~~~ 966 (993)
.+-
T Consensus 83 ls~ 85 (239)
T PRK10430 83 ISS 85 (239)
T ss_pred EEC
Confidence 743
No 112
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=98.20 E-value=7.7e-06 Score=86.38 Aligned_cols=78 Identities=23% Similarity=0.400 Sum_probs=70.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
.+||||||++..+..+...|+..|+++..+.++.++++.+. ...||++++|+.||+++|+++++.||+. ..+|+|+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls 82 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLR-QQPPDLVILDVGLPDISGFELCRQLLAFHPALPVIFLT 82 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 47999999999999999999999999999999999999885 4679999999999999999999999987 567887764
No 113
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=98.20 E-value=5.6e-06 Score=88.99 Aligned_cols=77 Identities=26% Similarity=0.323 Sum_probs=64.0
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCC-E-EEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGA-A-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVW 964 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~-~-v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~ 964 (993)
.+|||+||++..+..+...|+..|. . +..+.++.++++.+. ...||++|+|+.||++||+++++.|+.....++|+.
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii~v 80 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIH-RLKPDVVFLDIQMPRISGLELVGMLDPEHMPYIVFV 80 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHhcccCCCEEEEE
Confidence 3799999999999999999998873 3 346889999999885 467999999999999999999999986443345444
No 114
>CHL00148 orf27 Ycf27; Reviewed
Probab=98.19 E-value=7.7e-06 Score=87.35 Aligned_cols=78 Identities=28% Similarity=0.430 Sum_probs=71.5
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~ 965 (993)
.+||++||++..+..+...|...|+.+..+.++.+++..+. .+.||+|++|+.||+++|+++++.||+....|+|+..
T Consensus 7 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~-~~~~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~ls 84 (240)
T CHL00148 7 EKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFR-KEQPDLVILDVMMPKLDGYGVCQEIRKESDVPIIMLT 84 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEE
Confidence 48999999999999999999999999999999999999885 4679999999999999999999999998888887764
No 115
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=98.18 E-value=9.7e-06 Score=86.58 Aligned_cols=78 Identities=21% Similarity=0.265 Sum_probs=72.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~ 965 (993)
.+||++||++..+..+...|+..|+.+..+.++.+|+..+. ...||+|++|+.||+++|+++++.||.....|+++..
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l~ 88 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVR-QTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVT 88 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 48999999999999999999999999999999999999885 4679999999999999999999999988888988764
No 116
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.16 E-value=8.3e-06 Score=97.27 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=72.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
.+||||||++..+..+...|+..||.+..+.++.+|+..+. ...||+||+|+.||++||+++++.||.. ...|+|+.+
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~-~~~~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvlt 82 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALA-SKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMT 82 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEEE
Confidence 48999999999999999999999999999999999999995 5679999999999999999999999975 457887764
Q ss_pred ccc
Q 001941 966 LNL 968 (993)
Q Consensus 966 ~~~ 968 (993)
-..
T Consensus 83 ~~~ 85 (469)
T PRK10923 83 AHS 85 (469)
T ss_pred CCC
Confidence 333
No 117
>PRK15115 response regulator GlrR; Provisional
Probab=98.16 E-value=8.1e-06 Score=96.64 Aligned_cols=77 Identities=27% Similarity=0.445 Sum_probs=70.0
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILVW 964 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~~ 964 (993)
.+||||||++.++..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||+|||+++++.||+.. ..|||+.
T Consensus 6 ~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~-~~~~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIvl 83 (444)
T PRK15115 6 AHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLN-REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIIL 83 (444)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999999999999999999999999985 56799999999999999999999998754 4677665
No 118
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=98.14 E-value=1.3e-05 Score=86.22 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=89.1
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
+++|+|||++..+..+...|+.-|++|..+.++.+|++.+... +|++++|..++..++ ...++.+|.......|
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlviLD~~lP~~dG---~~~~~~iR~~~~~~~P 74 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ---PDLVLLDLMLPDLDG---LELCRRLRAKKGSGPP 74 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC---CCEEEEECCCCCCCH---HHHHHHHHhhcCCCCc
Confidence 4799999999999999999999999999999999999988765 999999998874443 3356777754222235
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
.+++.+.+........ -..|..+++.||+...+|.+-+...+..
T Consensus 75 Ii~Lta~~~~~d~v~g--l~~GADDYl~KPf~~~EL~ARi~a~lRR 118 (229)
T COG0745 75 IIVLTARDDEEDRVLG--LEAGADDYLTKPFSPRELLARLRALLRR 118 (229)
T ss_pred EEEEECCCcHHHHHHH--HhCcCCeeeeCCCCHHHHHHHHHHHHCc
Confidence 6666554332222222 2237789999999999999998888753
No 119
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=98.14 E-value=1e-05 Score=84.80 Aligned_cols=76 Identities=24% Similarity=0.472 Sum_probs=68.9
Q ss_pred EEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 889 ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
||++||++..+..+...|...|+.+..+.++.++++.+. .+.||+|++|+.||+++|+++++.||+. ...|+++..
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls 77 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLAL-KDDYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLT 77 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEE
Confidence 589999999999999999999999999999999999885 4679999999999999999999999964 567887764
No 120
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.13 E-value=1e-05 Score=96.11 Aligned_cols=80 Identities=29% Similarity=0.447 Sum_probs=71.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVW 964 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~ 964 (993)
..+||||||++..+..+...|+..||++.++.++.+|++.+. ...||+|++|+.||+++|+++++.||+. ..+|+|+.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlillD~~~p~~~g~~ll~~i~~~~~~~pvI~l 82 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFA-DIHPDVVLMDIRMPEMDGIKALKEMRSHETRTPVILM 82 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 458999999999999999999999999999999999999985 5679999999999999999999999975 45788776
Q ss_pred cc
Q 001941 965 KL 966 (993)
Q Consensus 965 ~~ 966 (993)
+-
T Consensus 83 t~ 84 (457)
T PRK11361 83 TA 84 (457)
T ss_pred eC
Confidence 43
No 121
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.11 E-value=1.1e-05 Score=95.36 Aligned_cols=78 Identities=29% Similarity=0.464 Sum_probs=70.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~~~ 965 (993)
.+||||||++..+..+...|+..|+.+.++.++.+|++.+. ...||+||+|+.||+++|++++++||+.. ..|+|+.+
T Consensus 6 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi~lt 84 (441)
T PRK10365 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR-EQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMT 84 (441)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEE
Confidence 58999999999999999999999999999999999999885 46799999999999999999999999764 46777664
No 122
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=98.10 E-value=1.5e-05 Score=83.03 Aligned_cols=77 Identities=16% Similarity=0.289 Sum_probs=69.1
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEEEc
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILVWK 965 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~~~ 965 (993)
+||++||++..+..+...|+..|+++. .+.++.++++.+. ...||+|++|+.||+++|+++++.+|+.. ..|+|+..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls 80 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE-TLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVS 80 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH-ccCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEe
Confidence 699999999999999999999999987 6899999999885 46799999999999999999999999864 56777774
No 123
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=98.09 E-value=2.2e-05 Score=80.58 Aligned_cols=79 Identities=23% Similarity=0.301 Sum_probs=70.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVW 964 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~ 964 (993)
+.+||++||++..+..+...|+..|+.+..+.++.++++.+. ...||+|++|+.||.++|+++++.||+. ..+|+|+.
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~ii~l 81 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALP-GLRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVIVM 81 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhc-cCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 358999999999999999999999999999999999998885 4679999999999999999999999864 45777765
Q ss_pred c
Q 001941 965 K 965 (993)
Q Consensus 965 ~ 965 (993)
.
T Consensus 82 ~ 82 (202)
T PRK09390 82 T 82 (202)
T ss_pred E
Confidence 3
No 124
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=98.06 E-value=2.7e-05 Score=72.98 Aligned_cols=110 Identities=15% Similarity=0.258 Sum_probs=83.2
Q ss_pred EEEeCCchhhHHHHHHHHHHcCC-EEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 001941 741 ALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (993)
Q Consensus 741 vLvvdd~~~~~~v~~~~L~~lG~-~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (993)
||++||++..++.++..|+..|+ .+..+++..++++.+... .+|++++|..+... .....++.+++.. ..+.
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~~d~iiid~~~~~~---~~~~~~~~i~~~~--~~~~ 73 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKH--PPDLIIIDLELPDG---DGLELLEQIRQIN--PSIP 73 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHS--TESEEEEESSSSSS---BHHHHHHHHHHHT--TTSE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhccc--CceEEEEEeeeccc---ccccccccccccc--cccc
Confidence 68999999999999999999999 999999999999998664 49999999877553 2334677777765 2345
Q ss_pred EEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHH
Q 001941 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 858 (993)
Q Consensus 820 ~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l 858 (993)
+++++............ ..|...++.||+..+++.+.+
T Consensus 74 ii~~t~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 74 IIVVTDEDDSDEVQEAL-RAGADDYLSKPFSPEELRAAI 111 (112)
T ss_dssp EEEEESSTSHHHHHHHH-HTTESEEEESSSSHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHhh
Confidence 55554433333333333 337889999999999888765
No 125
>PRK13558 bacterio-opsin activator; Provisional
Probab=98.05 E-value=9.9e-06 Score=100.86 Aligned_cols=80 Identities=16% Similarity=0.124 Sum_probs=71.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
.+||||||++.++..+..+|...||.+..+.++.+|++.+. ...||+||+|+.||+|+|++++++||+. ..+|+|+..
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~-~~~~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI~lt 86 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVE-AGEIDCVVADHEPDGFDGLALLEAVRQTTAVPPVVVVP 86 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhh-ccCCCEEEEeccCCCCcHHHHHHHHHhcCCCCCEEEEE
Confidence 47999999999999999999999999999999999999885 4679999999999999999999999974 458888874
Q ss_pred cc
Q 001941 966 LN 967 (993)
Q Consensus 966 ~~ 967 (993)
-.
T Consensus 87 ~~ 88 (665)
T PRK13558 87 TA 88 (665)
T ss_pred CC
Confidence 33
No 126
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.05 E-value=1.3e-05 Score=95.36 Aligned_cols=76 Identities=25% Similarity=0.340 Sum_probs=68.8
Q ss_pred EEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEEEc
Q 001941 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILVWK 965 (993)
Q Consensus 889 ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~~~ 965 (993)
||||||++..+..+...|+..||.+..+.++.+|+..+. ...||+|++|+.||++||+++++.||+.. .+|+|+..
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt 77 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALA-RGQPDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMT 77 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEe
Confidence 689999999999999999999999999999999999885 46799999999999999999999999754 57777763
No 127
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=98.05 E-value=2e-05 Score=83.67 Aligned_cols=79 Identities=9% Similarity=-0.001 Sum_probs=66.3
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCC---EEEEEcCHHHHHHHhCCCCCCcEEEEcCC--CCCCCHHHHHHHHhccC-CceE
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGA---AVVCVERGKKATELLMPPHQFDACFMDIQ--MPEMDGYEMLPCFESFL-LIAI 961 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~---~v~~a~~g~eAl~~~~~~~~~DlIlmDi~--MP~mdG~e~~~~Ir~~~-~~~~ 961 (993)
.||||||++..+..+..+|+..++ .+..+.++.+++..+. ...||+||||+. ||.+||.+++++||+.. ..+|
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~-~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~i 80 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD-SLRPSVVFINEDCFIHDASNSQRIKQIINQHPNTLF 80 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHh-ccCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCeE
Confidence 489999999999999999987653 3457899999999885 467999999976 88899999999998755 4888
Q ss_pred EEEccc
Q 001941 962 LVWKLN 967 (993)
Q Consensus 962 ~~~~~~ 967 (993)
|+.+-.
T Consensus 81 ivlt~~ 86 (207)
T PRK15411 81 IVFMAI 86 (207)
T ss_pred EEEECC
Confidence 887543
No 128
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=98.03 E-value=2.1e-05 Score=79.91 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=72.0
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~~~ 965 (993)
+-|.|||||...++.+..+|+..||.+.+..++.+-+... ....|.++|+|+.||+|+|.|+-++++..- ..|||+-+
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~-~~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfiT 83 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAA-PLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLT 83 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhc-cCCCCCeEEEecCCCCCchHHHHHHHHhcCCCCCEEEEe
Confidence 5699999999999999999999999999999999999986 356799999999999999999999998654 46777765
Q ss_pred ccccc
Q 001941 966 LNLKI 970 (993)
Q Consensus 966 ~~~~~ 970 (993)
--..|
T Consensus 84 GhgDI 88 (202)
T COG4566 84 GHGDI 88 (202)
T ss_pred CCCCh
Confidence 44443
No 129
>PRK09483 response regulator; Provisional
Probab=98.02 E-value=2.5e-05 Score=82.14 Aligned_cols=78 Identities=23% Similarity=0.333 Sum_probs=68.2
Q ss_pred eEEEEeCChHHHHHHHHHHHhC-CCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEEE
Q 001941 888 KILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILVW 964 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~~ 964 (993)
+|||+||++..+..+...|+.. |+.+. .+.++.++++.+. ...||+|++|+.||+++|+++++.||+.. ..|+++.
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 81 (217)
T PRK09483 3 NVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCR-TNAVDVVLMDMNMPGIGGLEATRKILRYTPDVKIIML 81 (217)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHCCCCeEEEE
Confidence 7999999999999999999874 88876 7899999999885 46799999999999999999999998754 4788777
Q ss_pred cc
Q 001941 965 KL 966 (993)
Q Consensus 965 ~~ 966 (993)
.-
T Consensus 82 s~ 83 (217)
T PRK09483 82 TV 83 (217)
T ss_pred eC
Confidence 43
No 130
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=98.01 E-value=4.1e-05 Score=81.35 Aligned_cols=85 Identities=19% Similarity=0.210 Sum_probs=70.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCC-E-EEEEcCHHHHHHHhCCCCCCcEEEEcCCCCC---CCHHHHHHHHhcc-CCce
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGA-A-VVCVERGKKATELLMPPHQFDACFMDIQMPE---MDGYEMLPCFESF-LLIA 960 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~-~-v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~---mdG~e~~~~Ir~~-~~~~ 960 (993)
.+||||||++..+..+...|+..++ . +..+.++.++++.+. ...||+||+|+.||+ ++|++++++||+. ...|
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~-~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~ 82 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLP-KLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLS 82 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH-hCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCc
Confidence 4799999999999999999987665 3 667899999999885 467999999999999 5999999999875 5578
Q ss_pred EEEEcccccchh
Q 001941 961 ILVWKLNLKISW 972 (993)
Q Consensus 961 ~~~~~~~~~~~~ 972 (993)
||+..-..+...
T Consensus 83 iIvls~~~~~~~ 94 (216)
T PRK10840 83 IIVLTMNNNPAI 94 (216)
T ss_pred EEEEEecCCHHH
Confidence 888855544444
No 131
>PRK13435 response regulator; Provisional
Probab=97.98 E-value=4e-05 Score=75.74 Aligned_cols=79 Identities=19% Similarity=0.186 Sum_probs=70.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCC-CCCHHHHHHHHhccCCceEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGYEMLPCFESFLLIAILV 963 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP-~mdG~e~~~~Ir~~~~~~~~~ 963 (993)
..+|||+||++.....+...|+..|+.+. +++++.++++.+. ...||+|++|+.|+ +++|.++.+.+++....|+|+
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~dliivd~~~~~~~~~~~~~~~l~~~~~~pii~ 83 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGR-RRQPDVALVDVHLADGPTGVEVARRLSADGGVEVVF 83 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhh-hcCCCEEEEeeecCCCCcHHHHHHHHHhCCCCCEEE
Confidence 36899999999999999999998899987 7899999999885 45799999999998 599999999999888899887
Q ss_pred Ec
Q 001941 964 WK 965 (993)
Q Consensus 964 ~~ 965 (993)
..
T Consensus 84 ls 85 (145)
T PRK13435 84 MT 85 (145)
T ss_pred Ee
Confidence 74
No 132
>PRK09191 two-component response regulator; Provisional
Probab=97.98 E-value=3.3e-05 Score=84.21 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=70.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCC-CCHHHHHHHHhccCCceEEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPE-MDGYEMLPCFESFLLIAILVW 964 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~-mdG~e~~~~Ir~~~~~~~~~~ 964 (993)
.+|||+||++..+..+...|+..|+.+. .+.++.++++.+. ...||+||+|+.||+ +||+++++.+|+...+|+|+.
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~-~~~~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii~l 216 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAK-KTRPGLILADIQLADGSSGIDAVNDILKTFDVPVIFI 216 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHh-ccCCCEEEEecCCCCCCCHHHHHHHHHHhCCCCEEEE
Confidence 5799999999999999999999999987 7889999999985 467999999999995 899999999998768899887
Q ss_pred cc
Q 001941 965 KL 966 (993)
Q Consensus 965 ~~ 966 (993)
.-
T Consensus 217 s~ 218 (261)
T PRK09191 217 TA 218 (261)
T ss_pred eC
Confidence 43
No 133
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=97.96 E-value=4.2e-05 Score=79.62 Aligned_cols=79 Identities=18% Similarity=0.306 Sum_probs=68.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHhC-CCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~ 963 (993)
.+|||+||++..+..+...|+.. ++.+. .+.++.++++.+. ...||+|++|+.||+++|+++++.||+. ...|+|+
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLR-TRPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKVLF 82 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEE
Confidence 47999999999999999999876 57775 6889999999885 4679999999999999999999999985 4578877
Q ss_pred Ecc
Q 001941 964 WKL 966 (993)
Q Consensus 964 ~~~ 966 (993)
..-
T Consensus 83 ls~ 85 (210)
T PRK09935 83 LSS 85 (210)
T ss_pred EEC
Confidence 743
No 134
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=97.95 E-value=2.9e-05 Score=83.01 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=65.2
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCE-EEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHH-HHHhcc-CCceEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEML-PCFESF-LLIAIL 962 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~-v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~-~~Ir~~-~~~~~~ 962 (993)
..++++|||++..+..+...|+. ++. +..+.++.+|++.+. .||+||+|+.||++||++++ +.||+. ...+|+
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~~---~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vv 85 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKIL 85 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccCC---CCCEEEEECCCCCccHHHHHHHHHHHhCCCCcEE
Confidence 35799999999999999999984 454 457789999998753 39999999999999999997 567765 467898
Q ss_pred EEccccc
Q 001941 963 VWKLNLK 969 (993)
Q Consensus 963 ~~~~~~~ 969 (993)
+.+-..+
T Consensus 86 vlt~~~~ 92 (216)
T PRK10100 86 LLNTPED 92 (216)
T ss_pred EEECCch
Confidence 8855444
No 135
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=97.94 E-value=4e-05 Score=79.21 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=65.8
Q ss_pred eEEEEeCChHHHHHHHHHHHhC-CCE-EEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEc
Q 001941 888 KILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWK 965 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~-g~~-v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~ 965 (993)
+||||||++..+..+...|+.. |+. +..+.++.++++.+. .+.||+|++|+.||+++|+++++.|+. ..||++..
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~--~~~vi~~s 79 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP-GRGVQVCICDISMPDISGLELLSQLPK--GMATIMLS 79 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHcc--CCCEEEEE
Confidence 7999999999999999999754 565 467899999999985 467999999999999999999999985 56887774
Q ss_pred cc
Q 001941 966 LN 967 (993)
Q Consensus 966 ~~ 967 (993)
-.
T Consensus 80 ~~ 81 (196)
T PRK10360 80 VH 81 (196)
T ss_pred CC
Confidence 33
No 136
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.94 E-value=5.9e-05 Score=85.22 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=47.0
Q ss_pred EEEEEEEcCCCCChhhHhhccCCccccCCCCc------CcCCCccchHHHHHHHHHHcCCEEEEEEeC--CCeEEEEEE
Q 001941 637 LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIP--NIGSTFTFT 707 (993)
Q Consensus 637 l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s------~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~--g~GStF~~~ 707 (993)
..+.|.|+|.||++++++++|++|++.+.... ..+|-.|.||+-...+ +++.+.|.. +.+..+.+.
T Consensus 52 ~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~~~~~~ 125 (312)
T TIGR00585 52 KLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGLAWQAL 125 (312)
T ss_pred EEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcceEEEE
Confidence 35899999999999999999999997654321 2345568888655444 368888875 445554444
No 137
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=97.90 E-value=5.7e-05 Score=79.33 Aligned_cols=76 Identities=30% Similarity=0.455 Sum_probs=68.5
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEEE
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILVW 964 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~~ 964 (993)
+||++||++.....+...|+..|+.+.++.++.++++.+. ...||+|++|+.||+++|+++++.||+.. ..|+++.
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~l 78 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQ-SEMYALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLL 78 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 6999999999999999999999999999999999998885 46799999999999999999999999764 5777665
No 138
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=97.90 E-value=3.6e-05 Score=63.73 Aligned_cols=62 Identities=40% Similarity=0.723 Sum_probs=52.5
Q ss_pred HHHHhhccccHhhHhHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001941 436 AKSQFLATVSHEIRTPMNGVLGMLDMLMDTEL-DVTQQDYVRTAQASGKALVSLINEVLDQAK 497 (993)
Q Consensus 436 aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l-~~~q~~~l~~i~~s~~~L~~lIndlLd~sk 497 (993)
.+.++.+.++||+||||+++.+.++.+.+... .+...++++.+..+++++..++++++++++
T Consensus 3 ~~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 3 AKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35678899999999999999999998876433 455678889999999999999999998864
No 139
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.89 E-value=4e-05 Score=90.83 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=67.6
Q ss_pred EEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCC-----CCHHHHHHHHhccC-CceEE
Q 001941 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-----MDGYEMLPCFESFL-LIAIL 962 (993)
Q Consensus 889 ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~-----mdG~e~~~~Ir~~~-~~~~~ 962 (993)
||||||++..+..+...| .||++.++.++.+|++.+. ...||+||+|+.||+ +||+++++.||+.. ..|||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~-~~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~piI 77 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVR-RHEPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKVI 77 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCEE
Confidence 689999999999999888 7899999999999999995 468999999999996 99999999998765 47888
Q ss_pred EEcccc
Q 001941 963 VWKLNL 968 (993)
Q Consensus 963 ~~~~~~ 968 (993)
+.+-..
T Consensus 78 ~lt~~~ 83 (445)
T TIGR02915 78 VITGND 83 (445)
T ss_pred EEecCC
Confidence 875433
No 140
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.88 E-value=6.7e-05 Score=87.55 Aligned_cols=164 Identities=12% Similarity=0.146 Sum_probs=112.7
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.+||+|||++..+.++...|+..|+.|..+.++.+|++.+... .+|+++.|..|+.. ++ ..+++.+++.. +.-|
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp~~--~G-l~ll~~i~~~~-~~~p 78 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMPGM--DG-LELLKEIKSRD-PDLP 78 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCC--ch-HHHHHHHHhhC-CCCC
Confidence 4799999999999999999999999999999999999999887 69999999888733 33 33567777654 2236
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCCCCCCcc----------cCC-CC-cchhh-----
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIR----------NWE-LP-SMSLR----- 881 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~~~~~~~----------~~~-~~-~~~~~----- 881 (993)
.+++++.+.-..-....+. |..+++.||+....+...+.+++......... ... .+ +....
T Consensus 79 VI~~Tg~g~i~~AV~A~k~--GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~ 156 (464)
T COG2204 79 VIVMTGHGDIDTAVEALRL--GAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRL 156 (464)
T ss_pred EEEEeCCCCHHHHHHHHhc--CcceeeeCCCCHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCCceecCHHHHHHHHH
Confidence 6666554433333333333 67799999999999999999998742211100 000 01 11110
Q ss_pred ---hccCCCeEEEEeCChHHHHHHHHHHHhCC
Q 001941 882 ---HLLLGRKILIVDDNNVNLKVAAAGLKRYG 910 (993)
Q Consensus 882 ---~~l~~~~ILIVdDn~~n~~vl~~~L~~~g 910 (993)
-..+...|||.-..-.=.+++..++.+.+
T Consensus 157 i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S 188 (464)
T COG2204 157 IAKVAPSDASVLITGESGTGKELVARAIHQAS 188 (464)
T ss_pred HHHHhCCCCCEEEECCCCCcHHHHHHHHHhhC
Confidence 01233468888887777777777776543
No 141
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=97.85 E-value=7.5e-05 Score=73.01 Aligned_cols=74 Identities=20% Similarity=0.251 Sum_probs=68.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAI 961 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~ 961 (993)
+..||||||....+.+...+++.||.|.++++..||+..+. ...|...+.|+.|.+-+|+++++.||+.-..--
T Consensus 10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~ar-t~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~r 83 (182)
T COG4567 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAAR-TAPPAYAVVDLKLGDGSGLAVIEALRERRADMR 83 (182)
T ss_pred ceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHh-cCCCceEEEEeeecCCCchHHHHHHHhcCCcce
Confidence 46999999999999999999999999999999999999995 578999999999999999999999998766543
No 142
>PRK09581 pleD response regulator PleD; Reviewed
Probab=97.81 E-value=8e-05 Score=87.57 Aligned_cols=80 Identities=29% Similarity=0.343 Sum_probs=72.0
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC---CceEEEE
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL---LIAILVW 964 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~---~~~~~~~ 964 (993)
+||+|||++..+..+...|+..|+.+..+.++.+++..+. ...||+|++|+.||+++|+++++.||+.. .+|+|+.
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii~~ 82 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICE-REQPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVVMV 82 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHh-hcCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEE
Confidence 7999999999999999999989999999999999999985 46799999999999999999999999854 5788888
Q ss_pred cccc
Q 001941 965 KLNL 968 (993)
Q Consensus 965 ~~~~ 968 (993)
.-..
T Consensus 83 s~~~ 86 (457)
T PRK09581 83 TALD 86 (457)
T ss_pred ECCC
Confidence 5433
No 143
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=97.68 E-value=0.00033 Score=65.32 Aligned_cols=77 Identities=30% Similarity=0.370 Sum_probs=67.0
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCE-EEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAIL 962 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~-v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~ 962 (993)
.+++++|+++.....+...|+..|++ +.++.++.+++..+. ...||++++|..+|.++|+++++.|++. ...|++
T Consensus 6 ~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~~i 84 (129)
T PRK10610 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGFGFVISDWNMPNMDGLELLKTIRADGAMSALPVL 84 (129)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhh-ccCCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCcEE
Confidence 58999999999999999999998984 778899999999885 4679999999999999999999999975 346665
Q ss_pred EE
Q 001941 963 VW 964 (993)
Q Consensus 963 ~~ 964 (993)
+.
T Consensus 85 ~~ 86 (129)
T PRK10610 85 MV 86 (129)
T ss_pred EE
Confidence 54
No 144
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=97.67 E-value=0.0003 Score=90.83 Aligned_cols=120 Identities=17% Similarity=0.151 Sum_probs=87.2
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC-
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG- 815 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~- 815 (993)
.++++|+|||++..+..+...|+++|++|..+.++.+|++.+.. ..+|++++|..++..++. ..++.++.....
T Consensus 689 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlil~D~~mp~~~G~---~~~~~ir~~~~~~ 763 (921)
T PRK15347 689 WQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ--HRFDLVLMDIRMPGLDGL---ETTQLWRDDPNNL 763 (921)
T ss_pred ccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHH---HHHHHHHhchhhc
Confidence 46799999999999999999999999999999999999998755 468999999988765433 345555543211
Q ss_pred -CC-ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 816 -FQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 816 -~~-~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.. |.+++.+.. ........ ...|+..++.||+....|...+.....
T Consensus 764 ~~~~pii~lt~~~-~~~~~~~~-~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 764 DPDCMIVALTANA-APEEIHRC-KKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred CCCCcEEEEeCCC-CHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 22 444443332 22222222 223788999999999999999987654
No 145
>PRK10403 transcriptional regulator NarP; Provisional
Probab=97.62 E-value=0.00028 Score=73.42 Aligned_cols=78 Identities=24% Similarity=0.275 Sum_probs=66.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHh-CCCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKR-YGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~-~g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~ 963 (993)
.+||++||++..+..+...|+. .++.+. .+.++.+++..+. ...||+|++|..||.++|+++++.||+.. ..|+++
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~ii~ 85 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLAN-RLDPDVILLDLNMKGMSGLDTLNALRRDGVTAQIII 85 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-hcCCCEEEEecCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 4799999999999999999975 577775 6889999999885 46799999999999999999999999764 467766
Q ss_pred Ec
Q 001941 964 WK 965 (993)
Q Consensus 964 ~~ 965 (993)
..
T Consensus 86 l~ 87 (215)
T PRK10403 86 LT 87 (215)
T ss_pred Ee
Confidence 53
No 146
>PRK13557 histidine kinase; Provisional
Probab=97.58 E-value=0.00028 Score=84.97 Aligned_cols=80 Identities=28% Similarity=0.334 Sum_probs=70.0
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCC-CCHHHHHHHHhcc-CCceEE
Q 001941 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-MDGYEMLPCFESF-LLIAIL 962 (993)
Q Consensus 885 ~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~-mdG~e~~~~Ir~~-~~~~~~ 962 (993)
.+++|||+||++..+..+..+|+..||.+..+.++.+|++.+.....||+|++|..||+ ++|+++++.||+. ..+|++
T Consensus 414 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii 493 (540)
T PRK13557 414 GTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSHPEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVL 493 (540)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcCCCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 35689999999999999999999999999999999999998843336999999999997 9999999999985 456666
Q ss_pred EE
Q 001941 963 VW 964 (993)
Q Consensus 963 ~~ 964 (993)
+.
T Consensus 494 ~~ 495 (540)
T PRK13557 494 LT 495 (540)
T ss_pred EE
Confidence 65
No 147
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.57 E-value=0.00063 Score=65.78 Aligned_cols=93 Identities=20% Similarity=0.256 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHHHHhcccC----CeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCC
Q 001941 549 DPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (993)
Q Consensus 549 D~~rL~QIL~NLL~NAiKfT~~----G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (993)
+...+.-++.-++.||++|+.. +.|.|.+..
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~--------------------------------------------- 62 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEV--------------------------------------------- 62 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEE---------------------------------------------
Confidence 3457888999999999999865 344444321
Q ss_pred CCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEE
Q 001941 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (993)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF 704 (993)
+...+.++|.|+|.|+++.....--..- .......|+||.|++++++.+ .+ + .++|++.
T Consensus 63 --------~~~~l~i~v~D~G~~~d~~~~~~~~~~~-------~~~~~~~G~Gl~li~~l~D~~----~~-~-~~~gn~v 121 (125)
T PF13581_consen 63 --------DPDRLRISVRDNGPGFDPEQLPQPDPWE-------PDSLREGGRGLFLIRSLMDEV----DY-R-EDGGNTV 121 (125)
T ss_pred --------cCCEEEEEEEECCCCCChhhccCccccc-------CCCCCCCCcCHHHHHHHHcEE----EE-E-CCCeEEE
Confidence 1124789999999999887554332110 023346799999999999875 45 3 7889998
Q ss_pred EEE
Q 001941 705 TFT 707 (993)
Q Consensus 705 ~~~ 707 (993)
+++
T Consensus 122 ~l~ 124 (125)
T PF13581_consen 122 TLR 124 (125)
T ss_pred EEE
Confidence 875
No 148
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=97.57 E-value=0.00039 Score=71.68 Aligned_cols=78 Identities=24% Similarity=0.371 Sum_probs=66.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHhC-CCEE-EEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~-g~~v-~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~ 963 (993)
.+||++||++..+..+...|... ++.+ ..+.++.++++... ...||+|++|+.||.++|+++++.+|+. ...|+++
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ii~ 82 (211)
T PRK15369 4 YKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACR-QLEPDIVILDLGLPGMNGLDVIPQLHQRWPAMNILV 82 (211)
T ss_pred cEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHCCCCcEEE
Confidence 57999999999999999999875 4664 47889999998875 4679999999999999999999999975 4567777
Q ss_pred Ec
Q 001941 964 WK 965 (993)
Q Consensus 964 ~~ 965 (993)
..
T Consensus 83 ls 84 (211)
T PRK15369 83 LT 84 (211)
T ss_pred Ee
Confidence 63
No 149
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=97.56 E-value=0.00086 Score=64.45 Aligned_cols=119 Identities=20% Similarity=0.291 Sum_probs=82.4
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHH-HHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQL-QCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~-~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
.+.+||+|||++..+..+...|+.+|+.+..+.++. +|++.+.... .+|++++|..++..+ ....++.+++. ..
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~---G~~~~~~l~~~-~~ 78 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMD---GIELLRRLRAR-GP 78 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCC---HHHHHHHHHhC-CC
Confidence 467999999999999999999999999999999996 9999886643 588999999998444 34456677765 11
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchH-HHHHHHHHh
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSM-LAASLQRAM 862 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~-l~~~l~~~l 862 (993)
..| ++++............ ...|...++.||+.... +.+.+.+.+
T Consensus 79 ~~p-vv~~t~~~~~~~~~~~-~~~g~~~~l~kP~~~~~~l~~~i~~~~ 124 (130)
T COG0784 79 NIP-VILLTAYADEADRERA-LAAGADDYLTKPIFLEEELLAALRRLL 124 (130)
T ss_pred CCC-EEEEEcCcCHHHHHHH-HHcCCCeEEcCCCCcHHHHHHHHHHHH
Confidence 225 4333322222211111 11356789999977766 566665443
No 150
>PRK10651 transcriptional regulator NarL; Provisional
Probab=97.55 E-value=0.00038 Score=72.54 Aligned_cols=78 Identities=23% Similarity=0.272 Sum_probs=66.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHhC-CCEE-EEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~-g~~v-~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~ 963 (993)
.+||||||++..+..+...|... ++.+ ..+.++.+++..+. ...||+|++|+.||+++|+++++.||+.. ..|+++
T Consensus 7 ~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~vi~ 85 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE-SLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVV 85 (216)
T ss_pred eEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEE
Confidence 48999999999999999999864 5654 46889999999885 46799999999999999999999999864 567776
Q ss_pred Ec
Q 001941 964 WK 965 (993)
Q Consensus 964 ~~ 965 (993)
..
T Consensus 86 l~ 87 (216)
T PRK10651 86 FS 87 (216)
T ss_pred Ee
Confidence 63
No 151
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.00027 Score=80.26 Aligned_cols=117 Identities=21% Similarity=0.297 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCC
Q 001941 549 DPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFK 628 (993)
Q Consensus 549 D~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (993)
-...|-|++.-|+.||+.+++..+|.=.+.+.-+
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~---------------------------------------------- 66 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIE---------------------------------------------- 66 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEE----------------------------------------------
Confidence 3456899999999999999976544322211100
Q ss_pred CCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCC--CcCcCCCccchHHHHHHHHHHcCCE-EEEEEeCCC-eEEE
Q 001941 629 SSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS--ISRTHGGTGIGLSISKYLVGRMKGE-IGFVSIPNI-GSTF 704 (993)
Q Consensus 629 ~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s--~s~~~~GtGLGLsI~k~LVe~mgG~-I~v~S~~g~-GStF 704 (993)
..+..++.+.|+|||+|||+++.+++|-.+.-.+.- .....|-.|||.+-|--..+..-|+ +.+.|..+. ++..
T Consensus 67 --~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~ 144 (538)
T COG1389 67 --RIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAY 144 (538)
T ss_pred --ecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceE
Confidence 011235789999999999999999999776432211 1112355799999998888887774 777776654 7777
Q ss_pred EEEEEeCCC
Q 001941 705 TFTAVFGNG 713 (993)
Q Consensus 705 ~~~lp~~~~ 713 (993)
.+.+-....
T Consensus 145 ~~~l~id~~ 153 (538)
T COG1389 145 EYELKIDVQ 153 (538)
T ss_pred EEEEEecCC
Confidence 777766543
No 152
>PLN03029 type-a response regulator protein; Provisional
Probab=97.48 E-value=0.00068 Score=72.81 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=82.7
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCC------------------CcccEEEEeccccccC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGS------------------KIINMILVEQEVWEKD 798 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~------------------~~~~~ilid~~~~~~~ 798 (993)
...+||+|||++..+..+...|+.+|+.|..+.++.++++.+.... ..+|++++|..++..+
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 3578999999999999999999999999999999999999875321 2578999999886543
Q ss_pred ccchHHHHHHHHhcCCCCC-ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHH
Q 001941 799 TSVSTLFVNNLRKLGCGFQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 860 (993)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~-~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~ 860 (993)
+ ...+..++....... |.+++... .......... ..|...++.||++...+......
T Consensus 87 G---~e~l~~ir~~~~~~~ipvIils~~-~~~~~~~~al-~~Ga~dyl~KP~~~~~L~~l~~~ 144 (222)
T PLN03029 87 G---YDLLKKIKESSSLRNIPVVIMSSE-NVPSRITRCL-EEGAEEFFLKPVQLSDLNRLKPH 144 (222)
T ss_pred H---HHHHHHHHhccccCCCcEEEEeCC-CCHHHHHHHH-HhCchheEECCCCHHHHHHHHHH
Confidence 3 335566665433222 44444322 2222222222 23678999999998888665443
No 153
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=97.48 E-value=0.00044 Score=89.22 Aligned_cols=119 Identities=22% Similarity=0.320 Sum_probs=88.9
Q ss_pred cCCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
..+.++|||||++.++.+++.+|+.+|+.|..+.++.+|++.+.. ..+|++++|..|+..++ ....+.+++...
T Consensus 799 ~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~--~~~DlVl~D~~mP~mdG---~el~~~ir~~~~- 872 (924)
T PRK10841 799 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLTDVNMPNMDG---YRLTQRLRQLGL- 872 (924)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCH---HHHHHHHHhcCC-
Confidence 357899999999999999999999999999999999999999865 46999999999876543 334566665432
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
..|.+++.+...... ... ....|+..++.||+....|...+.+..
T Consensus 873 ~~pII~lTa~~~~~~-~~~-~~~aG~d~~L~KPv~~~~L~~~L~~~~ 917 (924)
T PRK10841 873 TLPVIGVTANALAEE-KQR-CLEAGMDSCLSKPVTLDVLKQTLTVYA 917 (924)
T ss_pred CCCEEEEECCCCHHH-HHH-HHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 125554444333222 222 223378899999999999999887654
No 154
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=97.42 E-value=0.00074 Score=59.93 Aligned_cols=75 Identities=35% Similarity=0.438 Sum_probs=66.3
Q ss_pred EEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 890 LIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 890 LIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
|++|+++..+..+...++..|+.+..+.++.++...+. .+.||++++|..++..+|++..+.+++. ...|+++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 76 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLA-EEKPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLT 76 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHH-hCCCCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEE
Confidence 47899999999999999988999999999999999885 4679999999999999999999999986 557777663
No 155
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=97.41 E-value=0.00058 Score=87.37 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=71.0
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCC-CCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEE
Q 001941 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP-HQFDACFMDIQMPEMDGYEMLPCFESF-LLIAIL 962 (993)
Q Consensus 885 ~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~-~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~ 962 (993)
.+.+|||||||+.++..+...|+..||+++.+.++.+|++.+... ..||+||+ .||+|+|+++++.||+. ..+|||
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~~~ipII 773 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAAPTLPII 773 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhCCCCCEE
Confidence 356899999999999999999999999999999999999988432 34899999 79999999999999964 556888
Q ss_pred EEccccc
Q 001941 963 VWKLNLK 969 (993)
Q Consensus 963 ~~~~~~~ 969 (993)
+..-+.+
T Consensus 774 vls~~~~ 780 (828)
T PRK13837 774 LGGNSKT 780 (828)
T ss_pred EEeCCCc
Confidence 8754443
No 156
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=97.41 E-value=0.00058 Score=88.80 Aligned_cols=120 Identities=14% Similarity=0.213 Sum_probs=88.6
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
.+.++|+|||++..+.+++.+|+.+|+.|..+.++.+|++.+.. ..+|++++|..++..++ ...++.++......
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvl~D~~mp~~~g---~~~~~~ir~~~~~~ 775 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ--HAFDLALLDINLPDGDG---VTLLQQLRAIYGAK 775 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC--CCCCEEEECCCCCCCCH---HHHHHHHHhCcccc
Confidence 34589999999999999999999999999999999999999865 57999999998866442 33556666643322
Q ss_pred --CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 817 --QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 817 --~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.|.+++.+. ......... ...|+..++.||+....+...+...+.
T Consensus 776 ~~~pii~lta~-~~~~~~~~~-~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 776 NEVKFIAFSAH-VFNEDVAQY-LAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred CCCeEEEEECC-CCHHHHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 233333322 222222222 233788999999999999999988774
No 157
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=97.40 E-value=0.00042 Score=75.49 Aligned_cols=76 Identities=29% Similarity=0.397 Sum_probs=65.0
Q ss_pred eEEEEeCChHHHHHHHHHHHhC-CCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEE
Q 001941 888 KILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVW 964 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~ 964 (993)
+|+++||++..+.-+...+... ++++. .+.++.++++.+. ...+|++|+|+.||.|+|+++.++||...+.|.|+.
T Consensus 3 ~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Ivf 80 (244)
T COG3279 3 KVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQ-GLRPDLVFLDIAMPDINGIELAARIRKGDPRPAIVF 80 (244)
T ss_pred cEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHh-ccCCCeEEEeeccCccchHHHHHHhcccCCCCeEEE
Confidence 7999999999999999998832 22222 6889999999996 458999999999999999999999999988887665
No 158
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=97.31 E-value=0.0011 Score=85.57 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=90.3
Q ss_pred cCCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
..+.++|+|||++..+..++..|+.+|+.|..+.++.+|++.+.. ..+|++++|..++..++. ..++.+++....
T Consensus 665 ~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~g~---~~~~~lr~~~~~ 739 (919)
T PRK11107 665 RLPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQ--RPFDLILMDIQMPGMDGI---RACELIRQLPHN 739 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCcHH---HHHHHHHhcccC
Confidence 346799999999999999999999999999999999999998865 469999999988765433 345666654332
Q ss_pred CC-ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 816 FQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 816 ~~-~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
.. |.+++.+..... ..... ...|+..++.||+....+...+.+.+..
T Consensus 740 ~~~pii~lt~~~~~~-~~~~~-~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 740 QNTPIIAVTAHAMAG-ERERL-LSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred CCCCEEEEeCCCCHH-HHHHH-HHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 23 555444332222 11122 2237889999999999999999887753
No 159
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=97.27 E-value=0.00086 Score=74.83 Aligned_cols=116 Identities=18% Similarity=0.269 Sum_probs=86.0
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCC-C
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC-G 815 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~-~ 815 (993)
.-.++|+|||.+.+.+.++..|+..|+.+..+.++.+|+....... +|+++.|..|+.+++.. .+++++...+ .
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg~e---v~~~lk~~~p~t 87 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDGAE---VLNKLKAMSPST 87 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccC--CceEEeeccCCCccHHH---HHHHHHhcCCcc
Confidence 3468999999999999999999999999999999999998876654 99999999987665443 5666766333 2
Q ss_pred CC-ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHH
Q 001941 816 FQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQ 859 (993)
Q Consensus 816 ~~-~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~ 859 (993)
.. |.+++++-+-++.+..... .|+.+++.||++...+.+-..
T Consensus 88 ~~ip~i~lT~~~d~~~~~~~~~--~g~~dyl~KP~~~~~l~~rv~ 130 (360)
T COG3437 88 RRIPVILLTAYADSEDRQRALE--AGADDYLSKPISPKELVARVS 130 (360)
T ss_pred cccceEEEeecCChHHHHHHHH--hhHHHHhcCCCCHHHHHHHHH
Confidence 23 5555554443333332222 478899999999877766554
No 160
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=97.26 E-value=0.0012 Score=85.54 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=87.7
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
.+.+||+|||++..+..+..+|+.+|+.|..+.++.+|++.+.. ..++|++++|..++..++. ..++.+++.. +.
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~~Dlvl~D~~mp~~~G~---~~~~~lr~~~-~~ 754 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQN-SEPFAAALVDFDLPDYDGI---TLARQLAQQY-PS 754 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHc-CCCCCEEEEeCCCCCCCHH---HHHHHHHhhC-CC
Confidence 46799999999999999999999999999999999999998753 3468999999988765433 3455565532 22
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.|.+++.+...... .... ...|...++.||+....+...+.+.+.
T Consensus 755 ~~ii~~t~~~~~~~-~~~~-~~~g~~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 755 LVLIGFSAHVIDET-LRQR-TSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred CCEEEEeCCCchhh-HHHH-HhcCcCCEEeCCCCHHHHHHHHHHHhh
Confidence 25444443322221 1111 223677899999999999999988774
No 161
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=97.23 E-value=0.00088 Score=71.14 Aligned_cols=67 Identities=9% Similarity=-0.001 Sum_probs=54.3
Q ss_pred HHHHHHHHHh---CCCEEEEEcCHHHHHHHhCCCCCCcEEE---EcCCCCCCCHHHHHHHHhcc-CCceEEEEcc
Q 001941 899 LKVAAAGLKR---YGAAVVCVERGKKATELLMPPHQFDACF---MDIQMPEMDGYEMLPCFESF-LLIAILVWKL 966 (993)
Q Consensus 899 ~~vl~~~L~~---~g~~v~~a~~g~eAl~~~~~~~~~DlIl---mDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~~ 966 (993)
+..+..+|++ .|+.+.++.++.++++.+. ...||+++ +|+.||++||++++++||+. ...|||+.+-
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~-~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~ 76 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMS-RISFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIAD 76 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhc-cCCCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeC
Confidence 4556777764 5777789999999999985 46789998 78899999999999999764 5678888754
No 162
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=97.10 E-value=0.0023 Score=65.50 Aligned_cols=119 Identities=14% Similarity=0.149 Sum_probs=89.6
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.-|.||||+...++.+..+|+..|++|...+++++-++.. ....+..++.|..|+...+.. +...+...+.. .|
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~--~~~~pGclllDvrMPg~sGle---lq~~L~~~~~~-~P 78 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAA--PLDRPGCLLLDVRMPGMSGLE---LQDRLAERGIR-LP 78 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhc--cCCCCCeEEEecCCCCCchHH---HHHHHHhcCCC-CC
Confidence 4588999999999999999999999999999999988772 234566788998887654333 45556554432 37
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCC
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~ 865 (993)
.++++..+--+......+. |..+++.||++.+.+.+++++++...
T Consensus 79 VIfiTGhgDIpmaV~AmK~--GAvDFLeKP~~~q~Lldav~~Al~~~ 123 (202)
T COG4566 79 VIFLTGHGDIPMAVQAMKA--GAVDFLEKPFSEQDLLDAVERALARD 123 (202)
T ss_pred EEEEeCCCChHHHHHHHHc--chhhHHhCCCchHHHHHHHHHHHHHH
Confidence 7777665544444444544 67799999999999999999988643
No 163
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=96.98 E-value=0.033 Score=63.60 Aligned_cols=197 Identities=13% Similarity=0.108 Sum_probs=111.0
Q ss_pred ceEEEeCCchhhHHHHHHHH-HHcCCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHI-QRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L-~~lG~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
+++|+|||++..+..++..| +..|+.+. .++++.+|++.+.. ..+|++++|..++..++. ..++.++....
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~--~~pDlVllD~~mp~~~G~---e~l~~l~~~~~-- 73 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA--QPPDVILMDLEMPRMDGV---EATRRIMAERP-- 73 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc--cCCCEEEEcCCCCCCCHH---HHHHHHHHHCC--
Confidence 37999999999999999999 67889886 78999999998864 468999999887654332 34455554221
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCC---------cchHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCC
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPL---------RSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl---------~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 887 (993)
.|.+++.................|..+++.||+ ....+...+.............................
T Consensus 74 ~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (337)
T PRK12555 74 CPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGRLLGRRLAPAAAPAAASAAPFRTTP 153 (337)
T ss_pred CcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhhcccccCCCcccCCCCCCCCCCCCc
Confidence 244444332211111111112236778999999 34445555554443211110000000000000000000
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcC-HHHHHHHhCC--CCCCcE-EEEcCCCCCCCHHHHHHHHhccCCceEEE
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVER-GKKATELLMP--PHQFDA-CFMDIQMPEMDGYEMLPCFESFLLIAILV 963 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~-g~eAl~~~~~--~~~~Dl-IlmDi~MP~mdG~e~~~~Ir~~~~~~~~~ 963 (993)
++ .+..++. |.++++.+.. +..++. ++....||....-.+.+.+.+....+|..
T Consensus 154 ~v----------------------~~ig~s~gg~~al~~ll~~l~~~~~~~ivivqh~~~~~~~~l~~~l~~~~~~~V~~ 211 (337)
T PRK12555 154 RL----------------------VAIGASAGGPAALAVLLGGLPADFPAAIVIVQHVDAAFAAGMAEWLDGQTALPVRE 211 (337)
T ss_pred eE----------------------EEEEeCcCCHHHHHHHHHhCCCCCCCcEEEEEcCCCCchHHHHHHHhccCCCeEEE
Confidence 11 2222222 5556555421 123343 66677999998889999999998888855
Q ss_pred E
Q 001941 964 W 964 (993)
Q Consensus 964 ~ 964 (993)
-
T Consensus 212 a 212 (337)
T PRK12555 212 A 212 (337)
T ss_pred c
Confidence 4
No 164
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=96.97 E-value=0.0046 Score=71.95 Aligned_cols=119 Identities=22% Similarity=0.245 Sum_probs=85.6
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
..+||+|||+...++.++..|+..|+.+..+.++++|+..+.+. ++|++++|..++..++ ..+.+.+|+......
T Consensus 132 ~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~--~~dlil~d~~mp~~dg---~el~~~lr~~~~t~~ 206 (435)
T COG3706 132 PKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL--PPDLVLLDANMPDMDG---LELCTRLRQLERTRD 206 (435)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcC--CCcEEEEecCCCccCH---HHHHHHHhccccccc
Confidence 46899999999999999999999999999999999999998765 8999999998866543 335556666544433
Q ss_pred -ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 818 -SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 -~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
|.+++.. .+........-..|.+++++||+....+.+-+.+.+.
T Consensus 207 ipii~~~~--~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~ 251 (435)
T COG3706 207 IPIILLSS--KDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLR 251 (435)
T ss_pred ccEEEEec--ccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHH
Confidence 4444432 2222211111223788999999997777665555543
No 165
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=96.94 E-value=0.0074 Score=63.37 Aligned_cols=119 Identities=18% Similarity=0.205 Sum_probs=83.4
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
+.+++++||++..+..+...|+..|+.+..+.+..+++..+.. ..+|++++|..++..+ ....++.++.......
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~vi~d~~~~~~~---g~~~~~~l~~~~~~~~ 76 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE--RGPDLILLDWMLPGTS---GIELCRRLRRRPETRA 76 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh--cCCCEEEEECCCCCCc---HHHHHHHHHccccCCC
Confidence 3579999999999999999999999999999999999988754 4589999998775433 2345566665432222
Q ss_pred -ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 818 -SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 -~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
|.+++... ......... -..|...++.||+....+...+..++.
T Consensus 77 ~~ii~ls~~-~~~~~~~~~-~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 121 (226)
T TIGR02154 77 IPIIMLTAR-GEEEDRVRG-LETGADDYITKPFSPRELLARIKAVLR 121 (226)
T ss_pred CCEEEEecC-CCHHHHHHH-HhcCcceEEeCCCCHHHHHHHHHHHhc
Confidence 44443322 221111111 123677899999999999998888764
No 166
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=96.87 E-value=0.083 Score=60.78 Aligned_cols=207 Identities=13% Similarity=0.108 Sum_probs=113.4
Q ss_pred CceEEEeCCchhhHHHHHHHHHHc-CCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~l-G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
..++|+|||++..+..+...|+.. |+.+. .+.++.+++..+.. ..+|++++|..++..+. ...++.+++...
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~--~~~DlVllD~~mp~~dg---le~l~~i~~~~~- 76 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK--LNPDVITLDVEMPVMDG---LDALEKIMRLRP- 76 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh--hCCCEEEEeCCCCCCCh---HHHHHHHHHhCC-
Confidence 358999999999999999999887 88887 88999999987754 45899999988765433 234556655432
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcc---------hHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCC
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRS---------SMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG 886 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~---------~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 886 (993)
.|.+++.+............-..|..+++.||+.. ..+...+........+. ......+..... .
T Consensus 77 -~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~~~~~~~~-~~~~~~~~~~~~----~ 150 (354)
T PRK00742 77 -TPVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAAARARVRA-LPPRAAAAARAA----A 150 (354)
T ss_pred -CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHHhhccccc-cCccccccCCCc----c
Confidence 34444432211111110111123677899999943 23333333332211110 000000000000 0
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCC--CCCCcE-EEEcCCCCCCCHHHHHHHHhccCCceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP--PHQFDA-CFMDIQMPEMDGYEMLPCFESFLLIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~--~~~~Dl-IlmDi~MP~mdG~e~~~~Ir~~~~~~~~~ 963 (993)
..-.-....+.. ...-..+-....|.+++..+.. +..++. ++++.+||....-.+.+.+.+....||..
T Consensus 151 ~~~~~~~~~~~~--------~~~~~~igaS~gg~~al~~~l~~l~~~~~~~~~~~~h~~~~~~~~l~~~l~~~~~~~v~~ 222 (354)
T PRK00742 151 AAPAALAAAPLL--------SSKLVAIGTSTGGPEALQKVLTPLPANFPAPILIVQHMPAGFTKSFAERLNRLCQIEVKE 222 (354)
T ss_pred cCCcccccccCC--------CCcEEEEecCccCHHHHHHHHHhCCCCCCCeEEEEECCCCChhHHHHHHHhccCCCeEEE
Confidence 000000000000 0011122233346667765521 123454 88899999988888889999999988855
Q ss_pred E
Q 001941 964 W 964 (993)
Q Consensus 964 ~ 964 (993)
-
T Consensus 223 ~ 223 (354)
T PRK00742 223 A 223 (354)
T ss_pred c
Confidence 4
No 167
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=96.86 E-value=0.0025 Score=65.59 Aligned_cols=78 Identities=26% Similarity=0.264 Sum_probs=63.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~ 965 (993)
.++|++||++.++..+...|...||.++ ++.++.++.+... .+.||+||||+.||.-|-.+.....-.-..-||++.+
T Consensus 6 lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~-~~~pDvVildie~p~rd~~e~~~~~~~~~~~piv~lt 84 (194)
T COG3707 6 LRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCE-RLQPDVVILDIEMPRRDIIEALLLASENVARPIVALT 84 (194)
T ss_pred cceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHH-hcCCCEEEEecCCCCccHHHHHHHhhcCCCCCEEEEE
Confidence 5899999999999999999999999665 8899999999885 6899999999999999954444444444555666553
No 168
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=96.86 E-value=0.0091 Score=63.32 Aligned_cols=118 Identities=15% Similarity=0.176 Sum_probs=83.0
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC-
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ- 817 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~- 817 (993)
.+++++||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..+...+ ....++.+++......
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~l~~~~~~~~~ 77 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGS---GIQFIKHLKRESMTRDI 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCC---HHHHHHHHHhccccCCC
Confidence 579999999999999999999999999999999999987754 4689999998775432 2335566665432222
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
|.+++. ........... -..|...++.||+....+...+..++.
T Consensus 78 pvi~ls-~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 78 PVVMLT-ARGEEEDRVRG-LETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred CEEEEE-CCCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 444433 22221111111 123677899999999999988887764
No 169
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=96.85 E-value=0.0036 Score=73.31 Aligned_cols=118 Identities=16% Similarity=0.307 Sum_probs=84.1
Q ss_pred ceEEEeCCchhhHHHHHHHHH--HcCCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQ--RLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~--~lG~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
.+||+|||.+..++-++..+. .+|+.+. +|.||.+|++.++. ..+|++++|-.||..++.. +++.++...+
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e--~~pDiviTDI~MP~mdGLd---LI~~ike~~p- 75 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE--TQPDIVITDINMPGMDGLD---LIKAIKEQSP- 75 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh--cCCCEEEEecCCCCCcHHH---HHHHHHHhCC-
Confidence 379999999999998888765 4677664 67899999999876 6789999999998766444 4566665332
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
....+++. +.+.=+-....-..|+.+++.||+...+|.++|.++.+.
T Consensus 76 -~~~~IILS-Gy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~k 122 (475)
T COG4753 76 -DTEFIILS-GYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGK 122 (475)
T ss_pred -CceEEEEe-ccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHH
Confidence 24455443 333211111112336779999999999999999888763
No 170
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=96.85 E-value=0.0087 Score=63.39 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=81.7
Q ss_pred eEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 001941 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (993)
Q Consensus 740 rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (993)
++|++||++..+..++..|+..|+.+..+.++.+++..+.. .+|++++|..++..+ ....++.++.... .|.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~---g~~~~~~l~~~~~--~~i 74 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKN---GIDTLKELRQTHQ--TPV 74 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCc---HHHHHHHHHhcCC--CcE
Confidence 79999999999999999999999999999999999987742 589999998875433 2345566665432 243
Q ss_pred EEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 820 ~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
+++. ........... -..|...++.||+....+...+..++.
T Consensus 75 i~lt-~~~~~~~~~~~-~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 75 IMLT-ARGSELDRVLG-LELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred EEEE-CCCCHHHHHHH-HHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 4333 22221111111 223677899999999999999888774
No 171
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=96.84 E-value=0.011 Score=59.11 Aligned_cols=90 Identities=22% Similarity=0.281 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHHHHhcccC-----CeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCC
Q 001941 549 DPGRFRQIITNLMGNSIKFTEK-----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 623 (993)
Q Consensus 549 D~~rL~QIL~NLL~NAiKfT~~-----G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 623 (993)
|-.+++-++.-++.||++|..+ |.|.+.+...+
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~------------------------------------------ 74 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDD------------------------------------------ 74 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcC------------------------------------------
Confidence 6778999999999999999855 77766654321
Q ss_pred CCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCe
Q 001941 624 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIG 701 (993)
Q Consensus 624 ~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~G 701 (993)
..+.+.|.|.|+|+.+ .++.+.|-+.. ...-..-|+||.+++++++ ++.+.+.++.+
T Consensus 75 -----------~~~~i~i~D~G~~~~~--~~~~~~~~~~~----~~~~~~~G~Gl~l~~~~~D----~~~~~~~~~~~ 131 (146)
T COG2172 75 -----------GKLEIRIWDQGPGIED--LEESLGPGDTT----AEGLQEGGLGLFLAKRLMD----EFSYERSEDGR 131 (146)
T ss_pred -----------CeEEEEEEeCCCCCCC--HHHhcCCCCCC----CcccccccccHHHHhhhhe----eEEEEeccCCc
Confidence 2378999999988764 45556665322 1112234889999998774 57888555553
No 172
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.84 E-value=0.0041 Score=74.14 Aligned_cols=155 Identities=12% Similarity=0.060 Sum_probs=98.6
Q ss_pred EEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceE
Q 001941 741 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 820 (993)
Q Consensus 741 vLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (993)
||+|||++..+..+...|+..|+.|..++++.+|+..+.. ..+|++++|..++..++ ...+..+++... ...+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlVllD~~~p~~~g---~~ll~~l~~~~~--~~~v 73 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR--GQPDLLITDVRMPGEDG---LDLLPQIKKRHP--QLPV 73 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCCH---HHHHHHHHHhCC--CCeE
Confidence 5899999999999999999999999999999999988754 46899999988765432 334555655321 2233
Q ss_pred EEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCCeEEEEeCChHHHH
Q 001941 821 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLK 900 (993)
Q Consensus 821 ~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ILIVdDn~~n~~ 900 (993)
+++............. ..|...++.||+..+.+...+..++......... . ......+....++.+++.+++
T Consensus 74 Ivlt~~~~~~~~~~a~-~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~~~~~--~-----~~~~~~~~~~~lig~s~~~~~ 145 (463)
T TIGR01818 74 IVMTAHSDLDTAVAAY-QRGAFEYLPKPFDLDEAVTLVERALAHAQEQVAL--P-----ADAGEAEDSAELIGEAPAMQE 145 (463)
T ss_pred EEEeCCCCHHHHHHHH-HcCcceeecCCCCHHHHHHHHHHHHHHHHHHHhh--h-----hhhhccccccceeecCHHHHH
Confidence 3333222221111222 2267789999999999999888766432110000 0 000001122457888888888
Q ss_pred HHHHHHHhCC
Q 001941 901 VAAAGLKRYG 910 (993)
Q Consensus 901 vl~~~L~~~g 910 (993)
++..+.+..+
T Consensus 146 v~~~i~~~a~ 155 (463)
T TIGR01818 146 VFRAIGRLSR 155 (463)
T ss_pred HHHHHHHHhC
Confidence 8777655433
No 173
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=96.79 E-value=0.0077 Score=62.87 Aligned_cols=115 Identities=16% Similarity=0.215 Sum_probs=80.2
Q ss_pred eEEEeCCchhhHHHHHHHHHHc-CCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 740 KALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 740 rvLvvdd~~~~~~v~~~~L~~l-G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
+||+|||++..+++.+.+++.+ |+++. ++.++++|...+.... +|++|+|--|++.. + ..++..++...+..
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~--pDLILLDiYmPd~~--G-i~lL~~ir~~~~~~- 75 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK--PDLILLDIYMPDGN--G-IELLPELRSQHYPV- 75 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhC--CCEEEEeeccCCCc--c-HHHHHHHHhcCCCC-
Confidence 6999999999999999999886 66554 6789999999987643 39999998776543 3 23567777654321
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
..+++.|. +..+.-...-..|+.+++.||+....+..+|.+-.
T Consensus 76 DVI~iTAA--~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~ 118 (224)
T COG4565 76 DVIVITAA--SDMETIKEALRYGVVDYLIKPFTFERLQQALTRYR 118 (224)
T ss_pred CEEEEecc--chHHHHHHHHhcCchhheecceeHHHHHHHHHHHH
Confidence 23333332 22222222223378899999999999988886644
No 174
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=96.77 E-value=0.012 Score=62.88 Aligned_cols=119 Identities=14% Similarity=0.135 Sum_probs=84.1
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
..++|++||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..++..+ ....++.++... ...
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~~-~~~ 78 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR--ESFHLMVLDLMLPGED---GLSICRRLRSQN-NPT 78 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC-CCC
Confidence 4689999999999999999999999999999999999887754 5689999998775432 233455666532 122
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
|.+++. ........... -..|..+++.||+....+.+.+..++..
T Consensus 79 pii~ls-~~~~~~~~~~~-l~~Ga~~~l~kP~~~~~L~~~i~~~~~r 123 (239)
T PRK09468 79 PIIMLT-AKGEEVDRIVG-LEIGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred CEEEEE-CCCcHHHHHHH-HhcCCCeEEECCCCHHHHHHHHHHHhcc
Confidence 444443 22222111111 2236778999999999999988887753
No 175
>PRK11173 two-component response regulator; Provisional
Probab=96.73 E-value=0.012 Score=62.98 Aligned_cols=116 Identities=15% Similarity=0.195 Sum_probs=82.5
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.++|++||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..++..+ ....++.+++.. ..|
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~~--~~p 76 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--NDINLVIMDINLPGKN---GLLLARELREQA--NVA 76 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCCCC---HHHHHHHHhcCC--CCC
Confidence 579999999999999999999999999999999999988755 4689999998775432 233455666531 235
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++.+. ......... -..|..+++.||+....+.+.+..++.
T Consensus 77 ii~lt~~-~~~~~~~~~-~~~ga~d~l~kP~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 77 LMFLTGR-DNEVDKILG-LEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred EEEEECC-CCHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 4444322 222111111 223677999999999999887777664
No 176
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=96.70 E-value=0.0077 Score=45.78 Aligned_cols=54 Identities=37% Similarity=0.479 Sum_probs=48.2
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCC
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP 942 (993)
++++++|++..+..+...+...|+++....++.++...+. .+.||++++|+.+|
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLK-EEKPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHH-hcCCCEEEEeccCC
Confidence 6899999999999999999999999999999999998884 45799999998764
No 177
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.66 E-value=0.0087 Score=73.79 Aligned_cols=58 Identities=21% Similarity=0.198 Sum_probs=41.2
Q ss_pred EEEEEEEcCCCCChhhHhhccCCccccCCCCc------CcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001941 637 LIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (993)
Q Consensus 637 l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s------~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (993)
..|+|.|+|.||++++++.+|.++.+.+-... ...|--|.||+-...+ +++.+.|..+
T Consensus 52 ~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~~v-----s~l~i~s~~~ 115 (617)
T PRK00095 52 KLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIASV-----SRLTLTSRTA 115 (617)
T ss_pred EEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhhhc-----eEEEEEEecC
Confidence 46999999999999999999999876543221 2234467777654443 4788888764
No 178
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=96.65 E-value=0.012 Score=64.51 Aligned_cols=120 Identities=11% Similarity=0.169 Sum_probs=82.5
Q ss_pred ceEEEeCCchhhHHHHHHHHHHc-CCEE-EEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~l-G~~v-~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
.++|++||++..+..+...|+.. |+.+ ..+.++.++++.+.. ..+|++++|..++..++. ..++.++......
T Consensus 3 ~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~--~~~DlvllD~~mp~~dG~---~~l~~i~~~~~~~ 77 (262)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE--QQPDVVVLDIIMPHLDGI---GVLEKLNEIELSA 77 (262)
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHH---HHHHHHHhhcccc
Confidence 58999999999999999999864 5554 478999999998865 458999999888654432 3455665543322
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
.+.++++........... ....|...++.||+....+...+.++...
T Consensus 78 ~~~iI~lt~~~~~~~~~~-~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 78 RPRVIMLSAFGQEKITQR-AVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred CCeEEEEeCCCCHHHHHH-HHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 344444432222111111 12236788999999999999999887653
No 179
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=96.64 E-value=0.016 Score=60.63 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=81.9
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
++++++||++..+..+...|+..|+.+..+.+..++++.+.. ..+|++++|..++..+ ....++.++.... ..|
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~illd~~~~~~~---g~~~~~~l~~~~~-~~p 74 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES--GHYSLVVLDLGLPDED---GLHLLRRWRQKKY-TLP 74 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEECCCCCCC---HHHHHHHHHhcCC-CCc
Confidence 378999999999999999999999999999999999987754 4579999998775433 2334556665431 124
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++.. .......... -..|..+++.||+....+.+.+...+.
T Consensus 75 ii~ls~-~~~~~~~~~~-~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 75 VLILTA-RDTLEDRVAG-LDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred EEEEEC-CCCHHHHHHH-HhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 444332 2221111111 123677899999999999988887764
No 180
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=96.61 E-value=0.014 Score=62.98 Aligned_cols=117 Identities=19% Similarity=0.337 Sum_probs=79.7
Q ss_pred ceEEEeCCchhhHHHHHHHHHHc-CCEE-EEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~l-G~~v-~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
.+||+|||++..++.++..|++. |+.+ ..++++.++++.+......+|++++|..++..++ ...++.+++..+
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G---~eli~~l~~~~~-- 76 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENG---LDLLPVLHEAGC-- 76 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCc---HHHHHHHHhhCC--
Confidence 47999999999999999999874 7764 4788999999887654566899999988765432 235566665432
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHH
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 861 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~ 861 (993)
..+++++............. ..|...++.||+....+..++.+.
T Consensus 77 ~~~vI~ls~~~~~~~~~~al-~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 77 KSDVIVISSAADAATIKDSL-HYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred CCCEEEEECCCcHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHH
Confidence 22333333322222221221 236778999999999998888753
No 181
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=96.60 E-value=0.012 Score=62.37 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=82.2
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
++++++||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..++..+ ....++.++...+ ..|
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~~~~~~---g~~~~~~lr~~~~-~~p 74 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT--GDYDLIILDIMLPDVN---GWDIVRMLRSANK-GMP 74 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcCC-CCC
Confidence 379999999999999999999999999999999999887644 4589999998775433 2335556665331 124
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++... ......... -..|...++.||+....+.+.+..++.
T Consensus 75 ii~ls~~-~~~~~~~~~-~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 75 ILLLTAL-GTIEHRVKG-LELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred EEEEEcC-CCHHHHHHH-HhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 4443322 221111111 123677899999999999998887764
No 182
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=96.58 E-value=0.012 Score=62.18 Aligned_cols=117 Identities=18% Similarity=0.204 Sum_probs=82.6
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
+++|++||++..+..+...|+..|+.+..+.++.+|+..+.. ..+|++++|..++..+ ....++.+++... ..|
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~---g~~l~~~lr~~~~-~~p 74 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE--HLPDIAIVDLGLPDED---GLSLIRRWRSNDV-SLP 74 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcCC-CCC
Confidence 479999999999999999999999999999999999987754 4589999998775432 2334556665321 225
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++... ......... -..|..+++.||+....+.+.+..++.
T Consensus 75 ii~ls~~-~~~~~~~~~-l~~Ga~d~l~kp~~~~eL~~~i~~~~~ 117 (223)
T PRK10816 75 ILVLTAR-ESWQDKVEV-LSAGADDYVTKPFHIEEVMARMQALMR 117 (223)
T ss_pred EEEEEcC-CCHHHHHHH-HHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 4444322 221111111 123677899999999999998887764
No 183
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=96.55 E-value=0.02 Score=60.30 Aligned_cols=116 Identities=14% Similarity=0.179 Sum_probs=81.6
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.++|++||++..+..+...|+..|+.|..+.++.+++..+.. ..+|++++|..++..+ ....++.++... ..|
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~~--~~~ 75 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN--QHVDLILLDINLPGED---GLMLTRELRSRS--TVG 75 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhCC--CCC
Confidence 579999999999999999999999999999999999988754 4589999998775433 233455666532 224
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++. ........... -..|..+++.||+....+.+.+...+.
T Consensus 76 ii~l~-~~~~~~~~~~~-l~~Ga~d~l~kP~~~~~L~~~i~~~~~ 118 (221)
T PRK10766 76 IILVT-GRTDSIDRIVG-LEMGADDYVTKPLELRELLVRVKNLLW 118 (221)
T ss_pred EEEEE-CCCcHHHHHHH-HHcCCCcEEeCCCCHHHHHHHHHHHHh
Confidence 44433 22222211111 223677899999999998888876653
No 184
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=96.54 E-value=0.015 Score=60.77 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=81.6
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
++++++||++.....+...|+..|+.+..+.+..+++..+.. ..+|++++|..+...+ ....++.+++..+ ..|
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~i~~~~~-~~~ 74 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPGMD---GRDILREWREKGQ-REP 74 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEECCCCCCC---HHHHHHHHHhcCC-CCc
Confidence 379999999999999999999999999999999999987754 4589999998775432 2335566665321 124
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++ +........... -..|..+++.||+....+...+..++.
T Consensus 75 ii~l-t~~~~~~~~~~~-~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 75 VLIL-TARDALAERVEG-LRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred EEEE-ECCCCHHHHHHH-HhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 4443 322222111111 123677899999999999888887764
No 185
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=96.52 E-value=0.016 Score=61.19 Aligned_cols=116 Identities=19% Similarity=0.231 Sum_probs=81.5
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.++|++||++..++.+...|+..|+.+..+.++.+++..+.. ..+|++++|..++..+ ....++.+++.. ..|
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~---g~~~~~~lr~~~--~~p 74 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGD---GIEFIRDLRQWS--AIP 74 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHcCC--CCC
Confidence 479999999999999999999999999999999999877644 4589999998775433 233455666432 225
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++.+.. ....... .-..|..+++.||+....+.+.+...+.
T Consensus 75 vi~lt~~~-~~~~~~~-~~~~ga~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 75 VIVLSARS-EESDKIA-ALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred EEEEECCC-CHHHHHH-HHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 44443222 1111111 1223677899999999999988887764
No 186
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=96.52 E-value=0.021 Score=61.12 Aligned_cols=117 Identities=14% Similarity=0.177 Sum_probs=81.0
Q ss_pred CceEEEeCCchhhHHHHHHHHHHc-CC-EEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRL-GI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~l-G~-~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
..+++++||++..+..++..|++. |+ .+..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++..+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~--~~pdlvllD~~mp~~~---gle~~~~l~~~~~~ 78 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER--FKPGLILLDNYLPDGR---GINLLHELVQAHYP 78 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCc---HHHHHHHHHhcCCC
Confidence 368999999999999999999874 78 47789999999988854 4579999998886543 23355666653222
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
.++++++........... -..|...++.||+....+..++.++.
T Consensus 79 --~~iivls~~~~~~~~~~a-l~~Ga~~yl~Kp~~~~~L~~~i~~~~ 122 (225)
T PRK10046 79 --GDVVFTTAASDMETVSEA-VRCGVFDYLIKPIAYERLGQTLTRFR 122 (225)
T ss_pred --CCEEEEEcCCCHHHHHHH-HHcCccEEEECCcCHHHHHHHHHHHH
Confidence 233333322221111111 12367789999999999999887754
No 187
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=96.46 E-value=0.018 Score=61.60 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=82.1
Q ss_pred eEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 001941 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (993)
Q Consensus 740 rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (993)
++|++||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..++..++ ...++.+++.. ..|.
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~g---~~~~~~ir~~~--~~pi 75 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR--EQPDLVLLDIMLPGKDG---MTICRDLRPKW--QGPI 75 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CCCE
Confidence 79999999999999999999999999999999999988754 46899999987755432 33455665521 1244
Q ss_pred EEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 820 ~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
+++.. .......... -..|..+++.||+....+.+.+...+..
T Consensus 76 i~l~~-~~~~~~~~~~-~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 76 VLLTS-LDSDMNHILA-LEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred EEEEC-CCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 44332 2222111111 2236778999999999998888776643
No 188
>PRK13856 two-component response regulator VirG; Provisional
Probab=96.44 E-value=0.02 Score=61.52 Aligned_cols=117 Identities=16% Similarity=0.199 Sum_probs=82.3
Q ss_pred eEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 001941 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (993)
Q Consensus 740 rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (993)
++|++||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..++..+ + ...++.++... ..|.
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~--g-~~l~~~i~~~~--~~pi 75 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS--ETVDVVVVDLNLGRED--G-LEIVRSLATKS--DVPI 75 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEeCCCCCCC--H-HHHHHHHHhcC--CCcE
Confidence 79999999999999999999999999999999999987744 4689999998775433 2 23455665432 2254
Q ss_pred EEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 820 ~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
+++.+........... -..|...++.||+....+.+.+..++..
T Consensus 76 i~lt~~~~~~~~~~~~-l~~Ga~~yl~kP~~~~eL~~~i~~~l~~ 119 (241)
T PRK13856 76 IIISGDRLEEADKVVA-LELGATDFIAKPFGTREFLARIRVALRV 119 (241)
T ss_pred EEEECCCCcHHHHHHH-HhcCcCeEEeCCCCHHHHHHHHHHHHhh
Confidence 4443322121111111 2236778999999999998888777643
No 189
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=96.39 E-value=0.023 Score=59.72 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=82.1
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
++++++||++..+..+...|+..|+.+..+.+..+++..+.. ..+|++++|..++..++ ...++.++... ..|
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~g---~~~~~~l~~~~--~~~ 73 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPGMDG---WQILQTLRTAK--QTP 73 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEECCCCCCCH---HHHHHHHHcCC--CCC
Confidence 379999999999999999999999999999999999988754 56899999987765432 33455665432 224
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++. ........... -..|...++.||+....+...+..++.
T Consensus 74 ii~ls-~~~~~~~~~~a-~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 116 (223)
T PRK11517 74 VICLT-ARDSVDDRVRG-LDSGANDYLVKPFSFSELLARVRAQLR 116 (223)
T ss_pred EEEEE-CCCCHHHHHHH-HhcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 44433 22221111111 223677899999999999988887764
No 190
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=96.37 E-value=0.036 Score=58.32 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=82.3
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.+++++||++..++.+...|+..|+.+..+.+..+++..+.. ..+|++++|..++..+ ....++.+++..+ ..|
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~~~-~~~ 77 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ--QPPDLVILDVGLPDIS---GFELCRQLLAFHP-ALP 77 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhhCC-CCC
Confidence 479999999999999999999999999999999999887754 4589999998775432 2345566665421 124
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
.+++ ............ -..|...++.||+....+...+..++..
T Consensus 78 ii~l-s~~~~~~~~~~a-~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 78 VIFL-TARSDEVDRLVG-LEIGADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred EEEE-EcCCcHHHHHHH-hhcCCCeEEECCCCHHHHHHHHHHHHCc
Confidence 4443 322221111111 2236778999999999999888877643
No 191
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=96.36 E-value=0.032 Score=58.93 Aligned_cols=118 Identities=14% Similarity=0.190 Sum_probs=81.6
Q ss_pred eEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 001941 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (993)
Q Consensus 740 rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (993)
++|++||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..+.....+ ....++.++...+ ..|.
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~~~-g~~~~~~i~~~~~-~~pi 77 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ--RLPDLAIIDIGLGEEIDG-GFMLCQDLRSLSA-TLPI 77 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh--CCCCEEEEECCCCCCCCC-HHHHHHHHHhcCC-CCCE
Confidence 68999999999999999999999999999999999988754 457999999877542111 2335566665421 1244
Q ss_pred EEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 820 ~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
+++. ........... -..|...++.||+....+.+.+..++.
T Consensus 78 i~ls-~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 78 IFLT-ARDSDFDTVSG-LRLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred EEEE-CCCCHHHHHHH-HhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 4443 22221111111 223677899999999999988887764
No 192
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=96.33 E-value=0.031 Score=59.22 Aligned_cols=121 Identities=10% Similarity=0.137 Sum_probs=82.2
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCC-E-EEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGI-Q-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~-~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
+.+++++||++..+..++..|+..+. . +..+.++.++++.+.. ..+|++++|..++..........++.+++..+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~- 79 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK--LDAHVLITDLSMPGDKYGDGITLIKYIKRHFP- 79 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh--CCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCC-
Confidence 36899999999999999999988765 3 6678999999988754 45899999987754310112345666665422
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
..++++++........... ...|...++.||.....+..++..+..
T Consensus 80 -~~~iIvls~~~~~~~~~~a-~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 80 -SLSIIVLTMNNNPAILSAV-LDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred -CCcEEEEEecCCHHHHHHH-HHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 2334444333222221122 223778999999999999999988764
No 193
>CHL00148 orf27 Ycf27; Reviewed
Probab=96.31 E-value=0.037 Score=58.91 Aligned_cols=118 Identities=19% Similarity=0.183 Sum_probs=82.6
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
.++++++||++..+..+...|+..|+.+..+.+..+++..+.. ..+|++++|..++..+ ....++.++.. ...
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~--~~~d~illd~~~~~~~---g~~~~~~l~~~--~~~ 78 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK--EQPDLVILDVMMPKLD---GYGVCQEIRKE--SDV 78 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHhc--CCC
Confidence 4689999999999999999999999999999999999987754 4589999998775533 23345556543 122
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
|.+++... ......... -..|...++.||+....+...+..++..
T Consensus 79 ~ii~ls~~-~~~~~~~~~-~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 123 (240)
T CHL00148 79 PIIMLTAL-GDVSDRITG-LELGADDYVVKPFSPKELEARIRSVLRR 123 (240)
T ss_pred cEEEEECC-CCHHhHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 44443322 221111111 1236778999999999999888877643
No 194
>PRK10693 response regulator of RpoS; Provisional
Probab=96.31 E-value=0.006 Score=68.68 Aligned_cols=51 Identities=27% Similarity=0.325 Sum_probs=43.9
Q ss_pred EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEcc
Q 001941 915 CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWKL 966 (993)
Q Consensus 915 ~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~~ 966 (993)
.+.++.+|++.+. ...||+|++|+.||+|||++++++||+. ..+|+|+.+-
T Consensus 2 ~a~~g~~al~~l~-~~~pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~ 53 (303)
T PRK10693 2 LAANGVDALELLG-GFTPDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISA 53 (303)
T ss_pred EeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEC
Confidence 4789999999985 4679999999999999999999999976 5678877743
No 195
>PRK15115 response regulator GlrR; Provisional
Probab=96.21 E-value=0.021 Score=67.69 Aligned_cols=118 Identities=16% Similarity=0.216 Sum_probs=83.8
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
..+||+|||++..+..+...|+..|+.+..+.++.+|++.+.. ..+|++++|..++..+ ....++.++...+ .
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~--~~~dlvilD~~lp~~~---g~~ll~~l~~~~~--~ 77 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR--EKVDLVISDLRMDEMD---GMQLFAEIQKVQP--G 77 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCC---HHHHHHHHHhcCC--C
Confidence 3689999999999999999999999999999999999988764 4579999998875543 2234555554321 2
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
..+++++........... ...|...++.||+....+...+..++.
T Consensus 78 ~pvIvlt~~~~~~~~~~a-~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 78 MPVIILTAHGSIPDAVAA-TQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred CcEEEEECCCCHHHHHHH-HhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 233333322222111112 223677899999999999999988775
No 196
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=96.21 E-value=0.017 Score=77.11 Aligned_cols=118 Identities=17% Similarity=0.264 Sum_probs=85.7
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
+.++|+|||++..+..+..+|+..|+.+..+.++.+|++.+.. ..+|++++|..++..++ ...++.++... ...
T Consensus 958 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~g---~~~~~~i~~~~-~~~ 1031 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM--QHYDLLITDVNMPNMDG---FELTRKLREQN-SSL 1031 (1197)
T ss_pred CceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCCH---HHHHHHHHhcC-CCC
Confidence 4689999999999999999999999999999999999998854 56899999988765432 33455555432 122
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
|.+++.+..... ..... ...|...++.||+....+...+.+...
T Consensus 1032 pii~lt~~~~~~-~~~~~-~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1032 PIWGLTANAQAN-EREKG-LSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CEEEEECCCCHH-HHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 544444332222 11122 223788999999999999999887654
No 197
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=96.19 E-value=0.0054 Score=78.61 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=53.2
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCC----------CCCHHHHH--H
Q 001941 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP----------EMDGYEML--P 951 (993)
Q Consensus 884 l~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP----------~mdG~e~~--~ 951 (993)
+.+.+||||||++.++.++..+|++.|++|..+.++. ....||+||||++++ +.+|++.. .
T Consensus 687 l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~~-------~~~~~Dlvl~D~~~~~~~~~lll~~d~~g~~~~~~~ 759 (894)
T PRK10618 687 LDGVTVLLDITSEEVRKIVTRQLENWGATCITPDERL-------ISQEYDIFLTDNPSNLTASTLLLSDDESGFRQIGPG 759 (894)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCccc-------cCCCCCEEEECCCCcCCCceEEeeCCcchHHHHHHH
Confidence 4578999999999999999999999999999988642 235699999999943 33555554 4
Q ss_pred HHhccCCc
Q 001941 952 CFESFLLI 959 (993)
Q Consensus 952 ~Ir~~~~~ 959 (993)
++|.-+.+
T Consensus 760 ~l~~~~~i 767 (894)
T PRK10618 760 QLRVNFNI 767 (894)
T ss_pred HHhcCCCc
Confidence 55654444
No 198
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=96.16 E-value=0.018 Score=68.12 Aligned_cols=118 Identities=19% Similarity=0.279 Sum_probs=82.4
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
..+|++|||++..+..+...|+.+|+.+..+.++.+++..+.. ..+|++++|..++..++ ...++.+++.. ...
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~DlvilD~~m~~~~G---~~~~~~ir~~~-~~~ 78 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--QVFDLVLCDVRMAEMDG---IATLKEIKALN-PAI 78 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCH---HHHHHHHHhhC-CCC
Confidence 4689999999999999999999999999999999999988764 45899999988865332 23455555532 112
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
|.++ ++........... -..|...++.||+..+.+...+..++.
T Consensus 79 ~vi~-lt~~~~~~~~~~a-~~~ga~~~l~Kp~~~~~L~~~l~~~l~ 122 (441)
T PRK10365 79 PVLI-MTAYSSVETAVEA-LKTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred eEEE-EECCCCHHHHHHH-HHhhhHHHhcCCCCHHHHHHHHHHHHH
Confidence 3333 3322111111111 122567899999999999888877654
No 199
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.15 E-value=0.022 Score=68.01 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=82.7
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.++|+|||++..+..+...|++.|+.+..+.++.+|+..+.. ..+|++++|..++..++ ...++.++.... ..|
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~--~~~DlvllD~~lp~~dg---l~~l~~ir~~~~-~~p 77 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS--KTPDVLLSDIRMPGMDG---LALLKQIKQRHP-MLP 77 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEECCCCCCCCH---HHHHHHHHhhCC-CCe
Confidence 489999999999999999999999999999999999998864 45899999988765432 334556655321 124
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++... ......... -..|...++.||+....+...+..++.
T Consensus 78 vIvlt~~-~~~~~~~~a-~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 120 (469)
T PRK10923 78 VIIMTAH-SDLDAAVSA-YQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred EEEEECC-CCHHHHHHH-HhcCcceEEecCCcHHHHHHHHHHHHH
Confidence 4443322 221111111 223677999999999988888776654
No 200
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=96.12 E-value=0.03 Score=57.98 Aligned_cols=117 Identities=10% Similarity=0.201 Sum_probs=81.8
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
++++++||++..+..+...|+..|+.+. .+.++.++++.+.. ..+|++++|..++..++ ...++.++...+ .
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g---~~~~~~l~~~~~--~ 73 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVNG---IQVLETLRKRQY--S 73 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc--cCCCEEEEeCCCCCCCH---HHHHHHHHhhCC--C
Confidence 4789999999999999999999999987 68999999988764 46899999987654332 335566665322 2
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
..+++++........... ...|...++.||+....+...++.++.
T Consensus 74 ~~ii~ls~~~~~~~~~~~-~~~ga~~~i~kp~~~~~l~~~i~~~~~ 118 (204)
T PRK09958 74 GIIIIVSAKNDHFYGKHC-ADAGANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred CeEEEEeCCCCHHHHHHH-HHCCCCEEEecCCCHHHHHHHHHHHHc
Confidence 223333332222211122 223678899999999999999988774
No 201
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=96.00 E-value=0.04 Score=54.45 Aligned_cols=113 Identities=16% Similarity=0.202 Sum_probs=78.9
Q ss_pred eEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 001941 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (993)
Q Consensus 740 rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (993)
..|+|||+......+..-+++-|+.|.++.+..+++..++... +...++|..+-. +.....++.++.... +..
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~--PayAvvDlkL~~---gsGL~~i~~lr~~~~--d~r 83 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAP--PAYAVVDLKLGD---GSGLAVIEALRERRA--DMR 83 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCC--CceEEEEeeecC---CCchHHHHHHHhcCC--cce
Confidence 5899999999999999999999999999999999999987754 444555554422 333446677776532 345
Q ss_pred EEEEeccCCcccc-cccCCCCCCCcccccCCcchHHHHHHHHH
Q 001941 820 LFLLANSISSSRA-NTSTDGVSIPSVIMKPLRSSMLAASLQRA 861 (993)
Q Consensus 820 ~~lla~~~~~~~~-~~~~~~~~~~~~l~KPl~~~~l~~~l~~~ 861 (993)
+++++.-.+-..+ +..+ .|...++.||-....+.+++.+.
T Consensus 84 ivvLTGy~sIATAV~AvK--lGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 84 IVVLTGYASIATAVEAVK--LGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred EEEEecchHHHHHHHHHH--hhhhhhcCCCCChHHHHHHHhhc
Confidence 5555432222111 1222 25678999999999998888765
No 202
>PRK14084 two-component response regulator; Provisional
Probab=96.00 E-value=0.036 Score=59.83 Aligned_cols=115 Identities=13% Similarity=0.313 Sum_probs=80.1
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcC-C-EEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLG-I-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG-~-~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
++++++||++..+..+...|+..| + .+..+.++.++++.+.. ..+|++++|..++..+ ....++.+++...
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~--~~~dlv~lDi~m~~~~---G~~~~~~i~~~~~-- 73 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI--NQYDIIFLDINLMDES---GIELAAKIQKMKE-- 73 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHhcCC--
Confidence 479999999999999999999877 3 56788999999988765 4589999999886543 2334556655321
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+.+++++.. ..... .. -..+...++.||+....+..++.++..
T Consensus 74 ~~~iI~~t~~-~~~~~-~~-~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (246)
T PRK14084 74 PPAIIFATAH-DQFAV-KA-FELNATDYILKPFEQKRIEQAVNKVRA 117 (246)
T ss_pred CCEEEEEecC-hHHHH-HH-HhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 2344443322 22111 11 123567899999999999999988763
No 203
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=95.99 E-value=0.033 Score=60.58 Aligned_cols=114 Identities=15% Similarity=0.254 Sum_probs=79.8
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.++++|||+......+..+|.+.|..+..++...+|+..+.. ..+|++++|-.|+...+.. +++..+... ...|
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~--~kpDLifldI~mp~~ngie---faeQvr~i~-~~v~ 74 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV--FKPDLIFLDIVMPYMNGIE---FAEQVRDIE-SAVP 74 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh--cCCCEEEEEeecCCccHHH---HHHHHHHhh-ccCc
Confidence 379999999999999999999999999999999999999865 5789999998886554333 334444432 1124
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
.+++.+-.--...+ -+....++++||+....|..++.+..
T Consensus 75 iifIssh~eya~ds----f~~n~~dYl~KPvt~ekLnraIdr~~ 114 (361)
T COG3947 75 IIFISSHAEYADDS----FGMNLDDYLPKPVTPEKLNRAIDRRL 114 (361)
T ss_pred EEEEecchhhhhhh----cccchHhhccCCCCHHHHHHHHHHHh
Confidence 44443321111111 11112389999999999999888776
No 204
>PRK13435 response regulator; Provisional
Probab=95.82 E-value=0.12 Score=50.81 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=78.1
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
..+++++|+++.....+...|...|+.+. .+++..++++.+.. ..+|++++|..+... . .....++.+++.. .
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~dliivd~~~~~~-~-~~~~~~~~l~~~~--~ 78 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR--RQPDVALVDVHLADG-P-TGVEVARRLSADG--G 78 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh--cCCCEEEEeeecCCC-C-cHHHHHHHHHhCC--C
Confidence 46899999999999999999999999987 68899999887643 468999999766321 1 1223344554421 2
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
.|.+ ++..... .... ...|...++.||+....+...+.++.
T Consensus 79 ~pii-~ls~~~~--~~~~--~~~ga~~~l~kp~~~~~l~~~i~~~~ 119 (145)
T PRK13435 79 VEVV-FMTGNPE--RVPH--DFAGALGVIAKPYSPRGVARALSYLS 119 (145)
T ss_pred CCEE-EEeCCHH--HHHH--HhcCcceeEeCCCCHHHHHHHHHHHH
Confidence 2433 3333221 1111 12367789999999999999988776
No 205
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=95.80 E-value=0.059 Score=57.46 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=82.4
Q ss_pred eEEEeCCchhhHHHHHHHHHHcC-CEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 740 KALVVDPRPIRAKVSRYHIQRLG-IQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 740 rvLvvdd~~~~~~v~~~~L~~lG-~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
+++++||.|..+.-++..|+..+ ++|. .+.++.++++.+ ....+|++++|..|+..++. ..++.+++..+ .
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~--~~~~pdvvl~Dl~mP~~~G~---e~~~~l~~~~p--~ 74 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLA--RELKPDVVLLDLSMPGMDGL---EALKQLRARGP--D 74 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHh--hhcCCCEEEEcCCCCCCChH---HHHHHHHHHCC--C
Confidence 69999999999999999998888 7754 556699999874 34678999999888764433 34555654322 2
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
.++++++............. .|...++.|......+..+++.+...
T Consensus 75 ~~vvvlt~~~~~~~v~~al~-~Ga~Gyl~K~~~~~~l~~ai~~v~~G 120 (211)
T COG2197 75 IKVVVLTAHDDPAYVIRALR-AGADGYLLKDASPEELVEAIRAVAAG 120 (211)
T ss_pred CcEEEEeccCCHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 24444444333333322222 37889999999999999999988743
No 206
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=95.67 E-value=0.15 Score=47.09 Aligned_cols=119 Identities=15% Similarity=0.261 Sum_probs=77.9
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCE-EEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
..+++++|+++.....+...|+..|+. +..+.+..+++..+.. ..+|++++|...... ......+.+++.....
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~di~l~d~~~~~~---~~~~~~~~l~~~~~~~ 79 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFVISDWNMPNM---DGLELLKTIRADGAMS 79 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc--cCCCEEEEcCCCCCC---CHHHHHHHHHhCCCcC
Confidence 468999999999999999999999994 7788899999887644 457889888654322 2234556666543222
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
...++++............ ...|...++.||+....+...+++++
T Consensus 80 ~~~~i~~~~~~~~~~~~~~-~~~g~~~~i~~p~~~~~l~~~l~~~~ 124 (129)
T PRK10610 80 ALPVLMVTAEAKKENIIAA-AQAGASGYVVKPFTAATLEEKLNKIF 124 (129)
T ss_pred CCcEEEEECCCCHHHHHHH-HHhCCCeEEECCCCHHHHHHHHHHHH
Confidence 2223333322221111111 12256789999999988888877654
No 207
>PRK09483 response regulator; Provisional
Probab=95.67 E-value=0.064 Score=56.14 Aligned_cols=118 Identities=9% Similarity=0.116 Sum_probs=81.1
Q ss_pred ceEEEeCCchhhHHHHHHHHHHc-CCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~l-G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
.+++++||++..+..+...|+.. |+.+. .+.+..+++..+.. ..+|++++|..+...++ ...++.+++..+
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g---~~~~~~l~~~~~-- 74 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT--NAVDVVLMDMNMPGIGG---LEATRKILRYTP-- 74 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCH---HHHHHHHHHHCC--
Confidence 47999999999999999999885 88875 68899999888764 46899999987754332 234555554322
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
..+++++............. ..|...++.||.....+..++..+...
T Consensus 75 ~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~k~~~~~~l~~~i~~~~~g 121 (217)
T PRK09483 75 DVKIIMLTVHTENPLPAKVM-QAGAAGYLSKGAAPQEVVSAIRSVHSG 121 (217)
T ss_pred CCeEEEEeCCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 23344443322222111211 236778999999999999999887753
No 208
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=95.64 E-value=0.043 Score=65.23 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=82.8
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
+.++|+|||++..+..+...|+..|+.+..+.++.+|+..+.. ..+|++++|..++..+ ....++.+++.. ...
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlillD~~~p~~~---g~~ll~~i~~~~-~~~ 77 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD--IHPDVVLMDIRMPEMD---GIKALKEMRSHE-TRT 77 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC-CCC
Confidence 4589999999999999999999999999999999999998764 4589999998875433 233455665532 122
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
|.+++... ......... -..|..+++.||+....+...+..++.
T Consensus 78 pvI~lt~~-~~~~~~~~a-~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 78 PVILMTAY-AEVETAVEA-LRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred CEEEEeCC-CCHHHHHHH-HHCCccEEEecccCHHHHHHHHhhhcc
Confidence 44444322 111111111 123677899999999998888876654
No 209
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=95.61 E-value=0.052 Score=56.61 Aligned_cols=115 Identities=19% Similarity=0.200 Sum_probs=79.8
Q ss_pred EEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceE
Q 001941 741 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKL 820 (993)
Q Consensus 741 vLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (993)
++++||++..+..+...|+..|+.+..+.+..+++..+.. ..+|++++|..+...+ ....++.++...+ ..|.+
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~~~-~~~ii 74 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK--DDYDLIILDVMLPGMD---GWQILQTLRRSGK-QTPVL 74 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHccCC-CCcEE
Confidence 4789999999999999999999999999999999988754 4589999998765432 2345566665322 12444
Q ss_pred EEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 821 FLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 821 ~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
+ ++........... -..|..+++.||+....+.+.+..++.
T Consensus 75 v-ls~~~~~~~~~~~-~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 115 (218)
T TIGR01387 75 F-LTARDSVADKVKG-LDLGADDYLVKPFSFSELLARVRTLLR 115 (218)
T ss_pred E-EEcCCCHHHHHHH-HHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 3 3322222111111 123677899999999999988887764
No 210
>PRK09191 two-component response regulator; Provisional
Probab=95.54 E-value=0.12 Score=56.16 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=79.3
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
.+++++||++..+..++..|+..|+.+. .+.++.++++.+.. ..+|++++|..++.. ......++.+++.. ..
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~--~~~dlvi~d~~~~~~--~~g~e~l~~l~~~~--~~ 211 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK--TRPGLILADIQLADG--SSGIDAVNDILKTF--DV 211 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc--cCCCEEEEecCCCCC--CCHHHHHHHHHHhC--CC
Confidence 5799999999999999999999999988 68899999988755 468999999876521 11233455665543 23
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
|.+++.... ... . .....+...++.||+....+...+.+++.
T Consensus 212 pii~ls~~~-~~~-~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~ 253 (261)
T PRK09191 212 PVIFITAFP-ERL-L--TGERPEPAFLITKPFQPDTVKAAISQALF 253 (261)
T ss_pred CEEEEeCCC-cHH-H--HHHhcccCceEECCCCHHHHHHHHHHHHh
Confidence 544443321 111 1 11112344689999999999999987664
No 211
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=95.40 E-value=0.13 Score=54.71 Aligned_cols=116 Identities=13% Similarity=0.159 Sum_probs=81.1
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.+++++||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..+.... ....+..++... ..|
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---g~~~~~~l~~~~--~~p 83 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ--TPPDLILLDLMLPGTD---GLTLCREIRRFS--DIP 83 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CCC
Confidence 389999999999999999999999999999999999988754 4589999998775433 223455555421 224
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++. ........... -..|..+++.||+....+...+..++.
T Consensus 84 ii~l~-~~~~~~~~~~~-~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 84 IVMVT-AKIEEIDRLLG-LEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred EEEEE-cCCCHHHHHHH-HhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 44433 22222111111 223677899999999999888877664
No 212
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=95.39 E-value=0.093 Score=54.82 Aligned_cols=117 Identities=19% Similarity=0.196 Sum_probs=79.9
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
++++++||++.....+...|+..|+.+..+.++.++++.+.. ..+|++++|..+...+ ....+..++.... ..|
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~vild~~~~~~~---~~~~~~~i~~~~~-~~~ 74 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS--EMYALAVLDINMPGMD---GLEVLQRLRKRGQ-TLP 74 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCc---HHHHHHHHHhcCC-CCC
Confidence 368999999999999999999999999999999999877644 4689999998765432 2234555554322 124
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++ +........... -..|...++.||+....+.+.+..++.
T Consensus 75 ii~l-t~~~~~~~~~~~-~~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 75 VLLL-TARSAVADRVKG-LNVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred EEEE-ECCCCHHHHHHH-HHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 4433 322222111111 123677899999999999988887664
No 213
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=95.36 E-value=0.074 Score=56.97 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=77.9
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCC-E-EEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGI-Q-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~-~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
++++++||++..+..+...|+.+|. . +..+.++.++++.+.. ..+|++++|..++..++ ...++.++.. .
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlv~lDi~~~~~~G---~~~~~~l~~~---~ 73 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR--LKPDVVFLDIQMPRISG---LELVGMLDPE---H 73 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCH---HHHHHHhccc---C
Confidence 4799999999999999999999983 3 4567899999988764 46899999998865432 2233444321 1
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.|.+++++.. ... .... -..+..+++.||+....+..++.++..
T Consensus 74 ~~~ii~vt~~-~~~-~~~a-~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 74 MPYIVFVTAF-DEY-AIKA-FEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred CCEEEEEecc-HHH-HHHH-HhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 2444444332 211 1111 123567899999999999999988764
No 214
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=95.31 E-value=0.079 Score=62.86 Aligned_cols=116 Identities=12% Similarity=0.151 Sum_probs=78.4
Q ss_pred EEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccC--ccchHHHHHHHHhcCCCCCc
Q 001941 741 ALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKD--TSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 741 vLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 818 (993)
+|+|||++..+..+...+ .|+.+..+.++.+|++.+.. ..+|++++|..++... .......++.+++..+ ..|
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~--~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~-~~p 75 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR--HEPAVVTLDLGLPPDADGASEGLAALQQILAIAP-DTK 75 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCC-CCC
Confidence 589999999888888877 79999999999999999865 4689999998876422 1222345566655322 224
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++.+..... ...... ..|..+++.||+....+...+..++.
T Consensus 76 iI~lt~~~~~~-~~~~a~-~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 76 VIVITGNDDRE-NAVKAI-GLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred EEEEecCCCHH-HHHHHH-HCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 44443322221 111221 22677899999999999888876654
No 215
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=95.30 E-value=0.011 Score=58.46 Aligned_cols=68 Identities=25% Similarity=0.336 Sum_probs=41.9
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCCC--CcCcCCCccch--HHHHHHHHHHcCCEEEEEEeCC-CeEEEEEEEEe
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPS--ISRTHGGTGIG--LSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAVF 710 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~s--~s~~~~GtGLG--LsI~k~LVe~mgG~I~v~S~~g-~GStF~~~lp~ 710 (993)
.|.|.|+|.||+.+.+.++|......... .....|..|+| +|+. .++..+.+.|... ...++++....
T Consensus 35 ~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~~~ 107 (137)
T PF13589_consen 35 YIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDYDW 107 (137)
T ss_dssp EEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEEEE
T ss_pred EEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEEec
Confidence 58999999999999999988765433221 12234567788 4433 3678899998754 33455555543
No 216
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=94.95 E-value=0.12 Score=53.04 Aligned_cols=114 Identities=11% Similarity=0.087 Sum_probs=76.4
Q ss_pred ceEEEeCCchhhHHHHHHHHHHc-CCE-EEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~l-G~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
.++++|||++..+..+...|... |+. +..++++.+++..+.. ..+|++++|..+...+ + ...++.++.
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~--g-~~~~~~l~~----- 71 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG--RGVQVCICDISMPDIS--G-LELLSQLPK----- 71 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC--H-HHHHHHHcc-----
Confidence 37999999999999999888754 665 5678999999988754 4689999998765433 2 223444432
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
..++++++............ ..|...++.||+....+...+..+..
T Consensus 72 ~~~vi~~s~~~~~~~~~~~~-~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 72 GMATIMLSVHDSPALVEQAL-NAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred CCCEEEEECCCCHHHHHHHH-HcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 22333443322222211222 22677899999999999999988774
No 217
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=94.89 E-value=0.12 Score=52.64 Aligned_cols=117 Identities=14% Similarity=0.174 Sum_probs=79.4
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.+++++||++.....+...|...|+.+..+.++.+++..+.. ..+|++++|..+...+ ....++.+++.. ...|
T Consensus 4 ~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~ii~d~~~~~~~---~~~~~~~l~~~~-~~~~ 77 (202)
T PRK09390 4 GVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG--LRFGCVVTDVRMPGID---GIELLRRLKARG-SPLP 77 (202)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc--CCCCEEEEeCCCCCCc---HHHHHHHHHhcC-CCCC
Confidence 579999999999999999999999999999999998877654 4589999998764432 223455565432 1224
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++ +........... ...|...++.||+....+...+..++.
T Consensus 78 ii~l-~~~~~~~~~~~~-~~~g~~~~l~~p~~~~~l~~~l~~~~~ 120 (202)
T PRK09390 78 VIVM-TGHGDVPLAVEA-MKLGAVDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred EEEE-ECCCCHHHHHHH-HHcChHHHhhCCCCHHHHHHHHHHHHH
Confidence 4433 322221111111 122566889999999888888877664
No 218
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=94.62 E-value=0.22 Score=51.47 Aligned_cols=117 Identities=11% Similarity=0.180 Sum_probs=78.6
Q ss_pred ceEEEeCCchhhHHHHHHHHHHc-CCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~l-G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
.+++++||++..+..+...|+.. ++.+. .+.++.+++..+.. ..+|++++|..+...++ ...++.++...+ .
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g---~~~~~~l~~~~~-~ 77 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT--RPVDLIIMDIDLPGTDG---FTFLKRIKQIQS-T 77 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCH---HHHHHHHHHhCC-C
Confidence 57999999999999999999887 57775 67888888887653 46899999987754332 234555554321 1
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.|. +++.+.......... ...|...++.||+....+...++.++.
T Consensus 78 ~~i-i~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~l~ 122 (210)
T PRK09935 78 VKV-LFLSSKSECFYAGRA-IQAGANGFVSKCNDQNDIFHAVQMILS 122 (210)
T ss_pred CcE-EEEECCCcHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHc
Confidence 233 333322221111111 223677899999999999999987764
No 219
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=94.03 E-value=0.1 Score=64.41 Aligned_cols=90 Identities=29% Similarity=0.454 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHHHHhcccCC---eEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCC
Q 001941 549 DPGRFRQIITNLMGNSIKFTEKG---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTS 625 (993)
Q Consensus 549 D~~rL~QIL~NLL~NAiKfT~~G---~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (993)
+...+..++.-||.||+.....| .|.|.+. +
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~--~-------------------------------------------- 67 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLH--A-------------------------------------------- 67 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCCCEEEEEEe--C--------------------------------------------
Confidence 56789999999999999975444 4444432 0
Q ss_pred CCCCCCCCceeEEEEEEEcCCCCChhhHhh--------ccCCccccCC---CCcCcCCC-ccchHHHHHHHHHHcCCEEE
Q 001941 626 PFKSSSADLINLIVSVEDTGQGIPLEAQSR--------IFTPFMQVGP---SISRTHGG-TGIGLSISKYLVGRMKGEIG 693 (993)
Q Consensus 626 ~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~--------IFepF~q~~~---s~s~~~~G-tGLGLsI~k~LVe~mgG~I~ 693 (993)
+ -.|+|.|+|.|||.+..+. +|......+. ......+| .|.|++.+..+.+. +.
T Consensus 68 -------d---g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~~----l~ 133 (631)
T PRK05559 68 -------D---GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSSR----LE 133 (631)
T ss_pred -------C---CcEEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhhheee----EE
Confidence 0 0489999999999998888 8876432211 11112233 79999988877554 45
Q ss_pred EEEeC
Q 001941 694 FVSIP 698 (993)
Q Consensus 694 v~S~~ 698 (993)
+++..
T Consensus 134 V~s~r 138 (631)
T PRK05559 134 VEVKR 138 (631)
T ss_pred EEEEe
Confidence 55543
No 220
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=93.66 E-value=0.45 Score=41.61 Aligned_cols=111 Identities=20% Similarity=0.240 Sum_probs=70.5
Q ss_pred EEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEE
Q 001941 742 LVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLF 821 (993)
Q Consensus 742 Lvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (993)
+++|+++..+..+...+...|+.+..+.+..+++..+.. ..++++++|......+. ...++.++.. ....+.++
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~~~~~~~~~~---~~~~~~l~~~-~~~~~~i~ 74 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE--EKPDLILLDIMMPGMDG---LELLRRIRKR-GPDIPIIF 74 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh--CCCCEEEEecCCCCCch---HHHHHHHHHh-CCCCCEEE
Confidence 367888888888899999999999999999999887754 46889999876544322 2344555544 11123333
Q ss_pred EEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHH
Q 001941 822 LLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 860 (993)
Q Consensus 822 lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~ 860 (993)
+............ ...+...++.||+....+...+..
T Consensus 75 -~~~~~~~~~~~~~-~~~~~~~~i~~p~~~~~l~~~l~~ 111 (113)
T cd00156 75 -LTAHGDDEDAVEA-LKAGADDYLTKPFSPEELLARIRA 111 (113)
T ss_pred -EEecccHHHHHHH-HHcChhhHccCCCCHHHHHHHHHh
Confidence 3222111111111 112566788999998888777654
No 221
>PRK14083 HSP90 family protein; Provisional
Probab=93.28 E-value=0.06 Score=65.87 Aligned_cols=57 Identities=26% Similarity=0.269 Sum_probs=33.4
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccC-------CCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeC
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTPFMQVG-------PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIP 698 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~-------~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~ 698 (993)
.++|+|||+||+.++..+.|-..-... .......|..|+|..-|-.+ +-++.|.|..
T Consensus 64 ~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~v----ad~v~V~Tr~ 127 (601)
T PRK14083 64 TLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFLV----ADEIVVVSRS 127 (601)
T ss_pred EEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEEe----cCEEEEEecc
Confidence 589999999999999888763221100 01112346678886644332 2345555544
No 222
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=92.96 E-value=0.58 Score=50.10 Aligned_cols=116 Identities=15% Similarity=0.181 Sum_probs=76.5
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCE-EEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
..++++|||+|+.+..++..|+ .++. +..+.++.++++.+. .+|++++|..+++.+ +.....+.++...+
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~--G~~~~~~~i~~~~p-- 80 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKK--LIHYWQDTLSRKNN-- 80 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCcc--HHHHHHHHHHHhCC--
Confidence 4569999999999999999997 5554 446678888887642 389999999986543 32222234444322
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
..+++++..... ..........|...++.|+...+.+..++..+..
T Consensus 81 ~~~vvvlt~~~~-~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~ 126 (216)
T PRK10100 81 NIKILLLNTPED-YPYREIENWPHINGVFYAMEDQERVVNGLQGVLR 126 (216)
T ss_pred CCcEEEEECCch-hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHc
Confidence 234555443322 1111111113677899999999999999998875
No 223
>PRK10651 transcriptional regulator NarL; Provisional
Probab=92.89 E-value=0.68 Score=47.88 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=78.1
Q ss_pred CceEEEeCCchhhHHHHHHHHHHc-CCEE-EEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRL-GIQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~l-G~~v-~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
..+++++||++..+..+...|... ++.+ ..+.+..+++..+.. ..+|++++|..+...+ ....++.++....
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~l~~~~---~~~~~~~l~~~~~- 79 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPGMN---GLETLDKLREKSL- 79 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCc---HHHHHHHHHHhCC-
Confidence 368999999999999899888875 5554 468899999987754 4589999998765432 2234555555322
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
...++++............. ..|...++.||+....+...+..++.
T Consensus 80 -~~~vi~l~~~~~~~~~~~~~-~~g~~~~i~k~~~~~~l~~~i~~~~~ 125 (216)
T PRK10651 80 -SGRIVVFSVSNHEEDVVTAL-KRGADGYLLKDMEPEDLLKALQQAAA 125 (216)
T ss_pred -CCcEEEEeCCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 22333333322222211111 22667899999999999999988874
No 224
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=92.74 E-value=0.15 Score=62.99 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=32.7
Q ss_pred EEEEEEcCCCCChhh--------Hhhcc-CCcccc--CCCCcCc-CCCccchHHHHHHHHHH
Q 001941 638 IVSVEDTGQGIPLEA--------QSRIF-TPFMQV--GPSISRT-HGGTGIGLSISKYLVGR 687 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~--------~~~IF-epF~q~--~~s~s~~-~~GtGLGLsI~k~LVe~ 687 (993)
.|+|.|+|.|||.+. .+-+| .+.... +....+. .|-.|.||+.+..+-+.
T Consensus 63 ~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~ 124 (625)
T TIGR01055 63 SIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKR 124 (625)
T ss_pred eEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCe
Confidence 489999999999988 66677 332211 1111112 23379999999888773
No 225
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=92.55 E-value=0.75 Score=47.00 Aligned_cols=118 Identities=11% Similarity=0.121 Sum_probs=77.0
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcC-CEE-EEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLG-IQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG-~~v-~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
..+++++||++..+..+...|...+ +.+ ..+.+..+++..... ..+|++++|..+...+ ....+..+++...
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~---~~~~~~~l~~~~~- 76 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ--LEPDIVILDLGLPGMN---GLDVIPQLHQRWP- 76 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHHHCC-
Confidence 4689999999999999999998864 554 478888888876543 4579999997764332 2234556655321
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
..++++++............. .|...++.||.....+...+.....
T Consensus 77 -~~~ii~ls~~~~~~~~~~~~~-~g~~~~l~kp~~~~~l~~~i~~~~~ 122 (211)
T PRK15369 77 -AMNILVLTARQEEHMASRTLA-AGALGYVLKKSPQQILLAAIQTVAV 122 (211)
T ss_pred -CCcEEEEeCCCCHHHHHHHHH-hCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 223333333222221111112 2667899999999999998887664
No 226
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=92.48 E-value=0.95 Score=48.07 Aligned_cols=117 Identities=5% Similarity=0.017 Sum_probs=74.4
Q ss_pred eEEEeCCchhhHHHHHHHHHHcCC---EEEEecCHHHHHHHHhcCCCcccEEEEecc--ccccCccchHHHHHHHHhcCC
Q 001941 740 KALVVDPRPIRAKVSRYHIQRLGI---QVEVVSDQLQCLSQIASGSKIINMILVEQE--VWEKDTSVSTLFVNNLRKLGC 814 (993)
Q Consensus 740 rvLvvdd~~~~~~v~~~~L~~lG~---~v~~~~~~~~al~~l~~~~~~~~~ilid~~--~~~~~~~~~~~~~~~~~~~~~ 814 (993)
.+++|||++..++.++..|++.+. .+..++++.++++.+.. ..+|++++|.. +..+++ ...++.+++..+
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~--~~pDlvLlDl~~~l~~~~g---~~~i~~i~~~~p 76 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS--LRPSVVFINEDCFIHDASN---SQRIKQIINQHP 76 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc--cCCCEEEEeCcccCCCCCh---HHHHHHHHHHCC
Confidence 589999999999999999987663 44567899999987753 35799999954 433332 246677766433
Q ss_pred CCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 815 ~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
..+++++............... ....++.|+.....+..++..+...
T Consensus 77 --~~~iivlt~~~~~~~~~~~~~~-~~~~~~~K~~~~~~L~~aI~~v~~g 123 (207)
T PRK15411 77 --NTLFIVFMAIANIHFDEYLLVR-KNLLISSKSIKPESLDDLLGDILKK 123 (207)
T ss_pred --CCeEEEEECCCchhHHHHHHHH-hhceeeeccCCHHHHHHHHHHHHcC
Confidence 2344444332211110000000 0012568999999999999888753
No 227
>PRK13558 bacterio-opsin activator; Provisional
Probab=92.37 E-value=0.33 Score=60.62 Aligned_cols=116 Identities=11% Similarity=0.105 Sum_probs=77.1
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.++|+|||++..+..+...|...|+.+..+.++.+++..+.. ..+|++++|..++..+ + ...++.++...+ ..|
T Consensus 8 ~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~--~~~Dlvl~d~~lp~~~--g-~~~l~~l~~~~~-~~p 81 (665)
T PRK13558 8 RGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA--GEIDCVVADHEPDGFD--G-LALLEAVRQTTA-VPP 81 (665)
T ss_pred eeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc--cCCCEEEEeccCCCCc--H-HHHHHHHHhcCC-CCC
Confidence 589999999999999999999999999999999999988754 5589999998876433 2 345666665322 224
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcch--HHHHHHHHHh
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSS--MLAASLQRAM 862 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~--~l~~~l~~~l 862 (993)
.+++... .......... ..|...++.||.... .+...+..++
T Consensus 82 iI~lt~~-~~~~~~~~al-~~Ga~dyl~k~~~~~~~~l~~~i~~~~ 125 (665)
T PRK13558 82 VVVVPTA-GDEAVARRAV-DADAAAYVPAVSDDATAAIAERIESAV 125 (665)
T ss_pred EEEEECC-CCHHHHHHHH-hcCcceEEeccchhHHHHHHHHHHHhh
Confidence 4444332 2221221222 226678899987543 4445554444
No 228
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=92.37 E-value=0.39 Score=49.74 Aligned_cols=116 Identities=19% Similarity=0.165 Sum_probs=74.9
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCEEEEec-CHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS-DQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~-~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
...|+|++||.+.++......|...|+++..+. ++..+.... ....+|++++|..++..+... .+...+..
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~--~~~~pDvVildie~p~rd~~e------~~~~~~~~ 75 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVC--ERLQPDVVILDIEMPRRDIIE------ALLLASEN 75 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHH--HhcCCCEEEEecCCCCccHHH------HHHHhhcC
Confidence 357899999999999999999999999887654 333333222 225689999999887665222 12222222
Q ss_pred CC-ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 816 FQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 816 ~~-~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
.. |.+.+++.+.+ ........ .|...++.||+..+.+...|.-+.
T Consensus 76 ~~~piv~lt~~s~p-~~i~~a~~-~Gv~ayivkpi~~~rl~p~L~vA~ 121 (194)
T COG3707 76 VARPIVALTAYSDP-ALIEAAIE-AGVMAYIVKPLDESRLLPILDVAV 121 (194)
T ss_pred CCCCEEEEEccCCh-HHHHHHHH-cCCeEEEecCcchhhhhHHHHHHH
Confidence 23 45555443332 22222222 378899999999999888876554
No 229
>PRK10403 transcriptional regulator NarP; Provisional
Probab=92.35 E-value=0.87 Score=46.96 Aligned_cols=117 Identities=17% Similarity=0.209 Sum_probs=77.1
Q ss_pred ceEEEeCCchhhHHHHHHHHHH-cCCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQR-LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~-lG~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
.+++++||++.....+...|.. .|+.+. .+.+..+++..+.. ..+|++++|..+...++ ...+..++....
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~~---~~~~~~l~~~~~-- 79 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR--LDPDVILLDLNMKGMSG---LDTLNALRRDGV-- 79 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCcH---HHHHHHHHHhCC--
Confidence 5799999999998888888875 577775 68899999887644 46899999987654332 234555554322
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
...++++............ ...|...++.||+....+...+..+..
T Consensus 80 ~~~ii~l~~~~~~~~~~~~-~~~g~~~~i~kp~~~~~l~~~i~~~~~ 125 (215)
T PRK10403 80 TAQIIILTVSDASSDVFAL-IDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred CCeEEEEeCCCChHHHHHH-HHcCCCeEEecCCCHHHHHHHHHHHhC
Confidence 2223333322221111111 123677899999999999888887653
No 230
>PRK15029 arginine decarboxylase; Provisional
Probab=92.30 E-value=0.71 Score=58.05 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=62.9
Q ss_pred ceEEEeCCchh--------hHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCcc-chHHHHHHH
Q 001941 739 MKALVVDPRPI--------RAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTS-VSTLFVNNL 809 (993)
Q Consensus 739 ~rvLvvdd~~~--------~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~-~~~~~~~~~ 809 (993)
++||+|||+.. ..+.+...|+..|++|..+.++.+|+..+... ..+|++++|..++..++. ....+++.+
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 47999999995 58888999999999999999999999998542 468999999887654432 113567777
Q ss_pred HhcCCCCCceEEEEec
Q 001941 810 RKLGCGFQSKLFLLAN 825 (993)
Q Consensus 810 ~~~~~~~~~~~~lla~ 825 (993)
|+... ..|.+++.+.
T Consensus 80 R~~~~-~iPIIlLTar 94 (755)
T PRK15029 80 HERQQ-NVPVFLLGDR 94 (755)
T ss_pred HhhCC-CCCEEEEEcC
Confidence 76432 2365555443
No 231
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=92.11 E-value=0.26 Score=61.02 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHHHHhcccCC---eEEEEE
Q 001941 549 DPGRFRQIITNLMGNSIKFTEKG---HIFVTV 577 (993)
Q Consensus 549 D~~rL~QIL~NLL~NAiKfT~~G---~I~v~v 577 (993)
|+.-|.+++.-||.||+.-...| .|.|.+
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i 65 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTI 65 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEE
Confidence 56778999999999999843344 455544
No 232
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=92.01 E-value=0.22 Score=61.98 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHHHHhcccCC---eEEEEE
Q 001941 549 DPGRFRQIITNLMGNSIKFTEKG---HIFVTV 577 (993)
Q Consensus 549 D~~rL~QIL~NLL~NAiKfT~~G---~I~v~v 577 (993)
|+.-|.+++.-||.||+.-...| .|.|.+
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i 58 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTI 58 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEE
Confidence 56779999999999999833233 444443
No 233
>PRK05218 heat shock protein 90; Provisional
Probab=90.78 E-value=0.77 Score=56.76 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=37.3
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccC------------CCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTPFMQVG------------PSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~------------~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (993)
.|.|+|||+||+.+++...|...-+.+ .+.....|-.|+|+.=| =..+-++.|.|...
T Consensus 74 ~i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~----f~va~~v~V~Sr~~ 143 (613)
T PRK05218 74 TLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSA----FMVADKVTVITRSA 143 (613)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhh----hhccCEEEEEEcCC
Confidence 489999999999999988764432211 01122345688998532 22345789988753
No 234
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=90.37 E-value=0.23 Score=61.76 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCChhhHhhcc
Q 001941 638 IVSVEDTGQGIPLEAQSRIF 657 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IF 657 (993)
.++|.|||+||+++++.+-+
T Consensus 73 ~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 73 TLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred EEEEEECCCCCCHHHHHHHh
Confidence 58999999999998866554
No 235
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=89.62 E-value=1.3 Score=50.59 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=51.0
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcC--CEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCcc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLG--IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTS 800 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG--~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~ 800 (993)
.|||||||.+..+.+++..|..-| ..|-++.|+.+|++.+.. ..+|++.+|.+|+..++.
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~--~~PDVi~ld~emp~mdgl 63 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK--LKPDVITLDVEMPVMDGL 63 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh--cCCCEEEEecccccccHH
Confidence 589999999999999999999999 555678899999998755 567999999998766533
No 236
>PTZ00130 heat shock protein 90; Provisional
Probab=89.03 E-value=0.55 Score=58.83 Aligned_cols=47 Identities=23% Similarity=0.341 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCChhhHhhccCC--------cccc---CCCCcCcCCCccchHHHHHHH
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTP--------FMQV---GPSISRTHGGTGIGLSISKYL 684 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFep--------F~q~---~~s~s~~~~GtGLGLsI~k~L 684 (993)
.++|+|||+||+.+++..-+-. |.+. ......-.|-.|+|.+-|--+
T Consensus 136 tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmV 193 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLV 193 (814)
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeee
Confidence 5899999999999976543311 2110 011123456789998766443
No 237
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=87.03 E-value=3.4 Score=39.24 Aligned_cols=107 Identities=21% Similarity=0.145 Sum_probs=60.2
Q ss_pred eEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 001941 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (993)
Q Consensus 740 rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (993)
||||+||+..|+.-+...|+-+|.+++.+++.+- ...... ...+.+.+-..... .....++.+.+..+ ...
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~--~~~~~~~v~~g~~~----~~~~~l~~l~~~~~--~~P 71 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWS--SPWEACAVILGSCS----KLAELLKELLKWAP--HIP 71 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhh--cCCcEEEEEecCch----hHHHHHHHHHhhCC--CCC
Confidence 6899999999999999999999999999987543 111212 22333333222111 11223334333211 122
Q ss_pred EEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHH
Q 001941 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 861 (993)
Q Consensus 820 ~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~ 861 (993)
++++...... . ....+...+..|++..+|.+.|.++
T Consensus 72 vlllg~~~~~-~-----~~~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 72 VLLLGEHDSP-E-----ELPNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred EEEECCCCcc-c-----cccCeeEecCCCCCHHHHHHHHHHh
Confidence 2333221111 0 0111345688999999999888764
No 238
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=86.91 E-value=3.7 Score=30.26 Aligned_cols=51 Identities=24% Similarity=0.417 Sum_probs=42.3
Q ss_pred eEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEec
Q 001941 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQ 792 (993)
Q Consensus 740 rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~ 792 (993)
+++++++++.........++..|+.+..+.+..++...+.. ..++++++|.
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~~~ 52 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKE--EKPDLILLDI 52 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHh--cCCCEEEEec
Confidence 68899999999998999999999999999999888877643 3467777764
No 239
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=86.54 E-value=2.4 Score=40.26 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=50.5
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEE-EEcCCCCCCCHHHHHHHH-hccCCceEEEE
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDAC-FMDIQMPEMDGYEMLPCF-ESFLLIAILVW 964 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlI-lmDi~MP~mdG~e~~~~I-r~~~~~~~~~~ 964 (993)
||||||||..-++-+..+|+=.|+++..++..+- ..... ...++.+ +....++ ...+.++.+ ++...+|+++-
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~-~~~~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlll 75 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADW-SSPWEACAVILGSCS--KLAELLKELLKWAPHIPVLLL 75 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhh-hcCCcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEE
Confidence 6999999999999999999999999888876554 22222 2345554 4444444 445555555 55568999765
No 240
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=86.03 E-value=0.81 Score=56.40 Aligned_cols=48 Identities=35% Similarity=0.542 Sum_probs=28.1
Q ss_pred EEEEEEcCCCCChhhHh--------hccCCcccc---CCCCcC-cCCCccchHHHHHHHH
Q 001941 638 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISR-THGGTGIGLSISKYLV 685 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~--------~IFepF~q~---~~s~s~-~~~GtGLGLsI~k~LV 685 (993)
.|+|.|+|.|||.+..+ -+|...... +....+ ..|-.|.||+.+..+-
T Consensus 34 ~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS 93 (594)
T smart00433 34 SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNALS 93 (594)
T ss_pred eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCcccchHHHHHHhc
Confidence 48999999999976543 223322111 111111 2234799999887774
No 241
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.47 E-value=2.8 Score=41.33 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhcccCCeEEEEEEEe
Q 001941 553 FRQIITNLMGNSIKFTEKGHIFVTVYLV 580 (993)
Q Consensus 553 L~QIL~NLL~NAiKfT~~G~I~v~v~~~ 580 (993)
+.-+...|+.||+||...|.|.|..++.
T Consensus 64 vgYl~NELiENAVKfra~geIvieasl~ 91 (184)
T COG5381 64 VGYLANELIENAVKFRATGEIVIEASLY 91 (184)
T ss_pred HHHHHHHHHHhhhcccCCCcEEEEEEec
Confidence 3345677999999999999999887654
No 242
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=84.64 E-value=4.4 Score=43.13 Aligned_cols=109 Identities=9% Similarity=0.034 Sum_probs=65.7
Q ss_pred HHHHHHHHH---cCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEEEEeccCC
Q 001941 752 KVSRYHIQR---LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSIS 828 (993)
Q Consensus 752 ~v~~~~L~~---lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lla~~~~ 828 (993)
..++..|.. .|+.|..+.++.++++.+.. ..+|++++|..+...+.......++.+++..+ ..++++++....
T Consensus 4 ~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~--~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p--~~~iIvlt~~~~ 79 (207)
T PRK11475 4 IGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR--ISFSAVIFSLSAMRSERREGLSCLTELAIKFP--RMRRLVIADDDI 79 (207)
T ss_pred HHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc--CCCCEEEeeccccCCCCCCHHHHHHHHHHHCC--CCCEEEEeCCCC
Confidence 345556654 57778899999999988654 35688986543322222223456777776533 233444432211
Q ss_pred cccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 829 SSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 829 ~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
+..........|...++.||.....+..++..++..
T Consensus 80 ~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 80 EARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG 115 (207)
T ss_pred HHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCC
Confidence 111111111236778999999999999999998854
No 243
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=83.93 E-value=1.3 Score=55.00 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.1
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccC
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTPFMQVG 664 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~ 664 (993)
.|.|.|||+||++++++-.+.++.+.+
T Consensus 54 ~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 54 LIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 489999999999999999999987643
No 244
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=77.14 E-value=7.4 Score=40.60 Aligned_cols=76 Identities=25% Similarity=0.221 Sum_probs=56.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCC--CCCCHHHHHHHHhccCC-ceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQM--PEMDGYEMLPCFESFLL-IAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~M--P~mdG~e~~~~Ir~~~~-~~~~~ 963 (993)
++||+||.....---+..+|+..|+++.+..|....++.+. ...||.|++---= |. |.--....||++.. +||+.
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~-~~~pd~iviSPGPG~P~-d~G~~~~~i~~~~~~~PiLG 79 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIE-ALKPDAIVISPGPGTPK-DAGISLELIRRFAGRIPILG 79 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHh-hcCCCEEEEcCCCCChH-HcchHHHHHHHhcCCCCEEE
Confidence 47999999999999999999999999999988844444443 3568999985432 33 33335777888744 89965
Q ss_pred E
Q 001941 964 W 964 (993)
Q Consensus 964 ~ 964 (993)
-
T Consensus 80 V 80 (191)
T COG0512 80 V 80 (191)
T ss_pred E
Confidence 4
No 245
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=75.57 E-value=2.2 Score=53.71 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=22.9
Q ss_pred CceEEeC--H-HHHHHHHHHHHHHHHhcccCC---eEEEEE
Q 001941 543 PETLIGD--P-GRFRQIITNLMGNSIKFTEKG---HIFVTV 577 (993)
Q Consensus 543 p~~v~gD--~-~rL~QIL~NLL~NAiKfT~~G---~I~v~v 577 (993)
|...+|+ + .-|.+++.-||+||+.-.-.| .|.|++
T Consensus 25 PgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i 65 (756)
T PRK14939 25 PGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTI 65 (756)
T ss_pred CCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEE
Confidence 4455564 3 458999999999999833233 444444
No 246
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=73.19 E-value=2.9 Score=51.94 Aligned_cols=50 Identities=30% Similarity=0.531 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCChhhHh--------hccCCccc---cCCCCcCcCCC-ccchHHHHHHHHHH
Q 001941 638 IVSVEDTGQGIPLEAQS--------RIFTPFMQ---VGPSISRTHGG-TGIGLSISKYLVGR 687 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~--------~IFepF~q---~~~s~s~~~~G-tGLGLsI~k~LVe~ 687 (993)
.|+|.|+|.|||.+..+ -+|.-... .|.+..+..|| .|.|++.|.-+-+.
T Consensus 67 sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~~ 128 (637)
T TIGR01058 67 SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSSW 128 (637)
T ss_pred eEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcccccCCcccccccccceeece
Confidence 48999999999976433 22321111 01111222233 79999988777664
No 247
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=72.42 E-value=13 Score=46.64 Aligned_cols=74 Identities=8% Similarity=0.150 Sum_probs=57.1
Q ss_pred eEEEEeCCh-HH-----HHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCce
Q 001941 888 KILIVDDNN-VN-----LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIA 960 (993)
Q Consensus 888 ~ILIVdDn~-~n-----~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~ 960 (993)
+++||+++- .+ .+.+...|++.||+|..+.+..+++..+......+.|++|++-. ..++++.||+. ..+|
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~P 78 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEY---SLDLCSDINQLNEYLP 78 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcccceeEEEEecccc---hHHHHHHHHHhCCCCC
Confidence 577777763 33 45577888999999999999999999886556688899985432 35588888855 8999
Q ss_pred EEEE
Q 001941 961 ILVW 964 (993)
Q Consensus 961 ~~~~ 964 (993)
|.+.
T Consensus 79 v~~~ 82 (713)
T PRK15399 79 LYAF 82 (713)
T ss_pred EEEE
Confidence 9886
No 248
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=65.25 E-value=7.9 Score=47.26 Aligned_cols=48 Identities=17% Similarity=0.293 Sum_probs=28.1
Q ss_pred EEEEEEEcCCCCChhhHhhcc--------CCcccc---CCCCcCcCCCccchHHHHHHH
Q 001941 637 LIVSVEDTGQGIPLEAQSRIF--------TPFMQV---GPSISRTHGGTGIGLSISKYL 684 (993)
Q Consensus 637 l~i~V~DtG~GI~~e~~~~IF--------epF~q~---~~s~s~~~~GtGLGLsI~k~L 684 (993)
-.++|+|||+||+.++...-. ..|.+. +...+.--|-.|+|++-|--.
T Consensus 74 kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmV 132 (623)
T COG0326 74 KTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMV 132 (623)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeee
Confidence 368999999999998664432 112211 111122346688888765433
No 249
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=65.21 E-value=21 Score=44.81 Aligned_cols=74 Identities=9% Similarity=0.170 Sum_probs=55.6
Q ss_pred eEEEEeCC-hHH-----HHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCce
Q 001941 888 KILIVDDN-NVN-----LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIA 960 (993)
Q Consensus 888 ~ILIVdDn-~~n-----~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~ 960 (993)
+||+|+++ ..+ .+.+...|++.||+|..+.+..+++..+......+.|+.|++- ...++++.||+. ..+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~P 78 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDK---YNLELCEEISKMNENLP 78 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcccceeEEEEecch---hhHHHHHHHHHhCCCCC
Confidence 46666555 222 4567788899999999999999999988655667889988532 224588988855 8999
Q ss_pred EEEE
Q 001941 961 ILVW 964 (993)
Q Consensus 961 ~~~~ 964 (993)
|.+.
T Consensus 79 v~~~ 82 (714)
T PRK15400 79 LYAF 82 (714)
T ss_pred EEEE
Confidence 9886
No 250
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.21 E-value=32 Score=31.70 Aligned_cols=75 Identities=13% Similarity=0.087 Sum_probs=55.0
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEE------cCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceE
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCV------ERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAI 961 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a------~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~ 961 (993)
+||||-..+.+...+...++++|++.... .....-++... ...|+||+=...=.=+-....++.-+..++|+
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i--~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~ 78 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKI--KKADLVIVFTDYVSHNAMWKVKKAAKKYGIPI 78 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhc--CCCCEEEEEeCCcChHHHHHHHHHHHHcCCcE
Confidence 48999997888888999999999998887 22222244332 35799988665555555666777778899999
Q ss_pred EEE
Q 001941 962 LVW 964 (993)
Q Consensus 962 ~~~ 964 (993)
+..
T Consensus 79 ~~~ 81 (97)
T PF10087_consen 79 IYS 81 (97)
T ss_pred EEE
Confidence 888
No 251
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=65.16 E-value=2.1e+02 Score=31.17 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 001941 388 AISTSIGILVIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKA 430 (993)
Q Consensus 388 ~~~~~i~~lvi~~l~~~i~~~~~~-----r~~~l~~~~~~~~el~~~a 430 (993)
.+..++.++++.+++.++++..+. |...+........+.++++
T Consensus 8 ~~~qiInFlil~~lL~kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA 55 (246)
T TIGR03321 8 VIAQLINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREA 55 (246)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555544433 3344444444444433333
No 252
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=60.34 E-value=35 Score=37.28 Aligned_cols=112 Identities=16% Similarity=0.254 Sum_probs=68.1
Q ss_pred ceEEEeCCchhhHHHHHHHHHHc-CCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~l-G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
++++++||++..++-++..+..+ ++.+. .+.+..++++.+... .+|++++|-.++ ++++. .....++.. ..
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~--~~~G~-ela~~i~~~--~~ 74 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMP--DINGI-ELAARIRKG--DP 74 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc--CCCeEEEeeccC--ccchH-HHHHHhccc--CC
Confidence 47899999999888888777731 22222 466777888887766 889999998887 33332 344455543 11
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHH
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 860 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~ 860 (993)
.|.++++.. ...-..... .....+++.||.....+.+.+..
T Consensus 75 ~~~Ivfvt~-~~~~a~~af--ev~a~d~i~kp~~~~~l~~~l~~ 115 (244)
T COG3279 75 RPAIVFVTA-HDEYAVAAF--EVEALDYLLKPISEERLAKTLER 115 (244)
T ss_pred CCeEEEEEe-hHHHHHHHH--hHHHHhhhcCcchHHHHHHHHHH
Confidence 233333322 111000000 11234789999999999888864
No 253
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=59.79 E-value=45 Score=31.71 Aligned_cols=71 Identities=18% Similarity=0.152 Sum_probs=49.0
Q ss_pred eCChHHHHHHHHHHHhCCCEEEEEc---CHHHHHHHhCCCCCCcEEEEcCCCCCC--CHHHHHHHHhccCC--ceEEEE
Q 001941 893 DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM--DGYEMLPCFESFLL--IAILVW 964 (993)
Q Consensus 893 dDn~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~~~~~~~~DlIlmDi~MP~m--dG~e~~~~Ir~~~~--~~~~~~ 964 (993)
|....-..++..+|+..||+|.... ..++.++.+. +.+||+|.+-..+... +..++.+.+|+... ++|++-
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~-~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAK-EEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 3334555678899999999996543 2445556664 4789999998875443 45778889998864 555554
No 254
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=59.49 E-value=4.7 Score=49.76 Aligned_cols=51 Identities=25% Similarity=0.375 Sum_probs=30.1
Q ss_pred EEEEEEcCCCCChhhHhh-----------ccCCcccc---CCCCcCcCCCccchHHHHHHHHHHc
Q 001941 638 IVSVEDTGQGIPLEAQSR-----------IFTPFMQV---GPSISRTHGGTGIGLSISKYLVGRM 688 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~-----------IFepF~q~---~~s~s~~~~GtGLGLsI~k~LVe~m 688 (993)
.|+|.|+|.|||-+..+. ||.-.... +.+..-..|-.|.|.+.|.-+-+.+
T Consensus 80 sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~ 144 (602)
T PHA02569 80 QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLF 144 (602)
T ss_pred EEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhh
Confidence 389999999999875421 23211111 1111112344899999887776554
No 255
>PLN03237 DNA topoisomerase 2; Provisional
Probab=59.35 E-value=13 Score=49.64 Aligned_cols=54 Identities=26% Similarity=0.523 Sum_probs=31.8
Q ss_pred EEEEEEcCCCCChhhHh--------hccCCcccc---CCCCcCcCCC-ccchHHHHHHHHHHcCCE
Q 001941 638 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGRMKGE 691 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~--------~IFepF~q~---~~s~s~~~~G-tGLGLsI~k~LVe~mgG~ 691 (993)
.|+|.|+|.|||-+..+ -||.-.... +....+..|| .|.|.++|.-+-+.+--+
T Consensus 112 sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f~Ve 177 (1465)
T PLN03237 112 LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEFVIE 177 (1465)
T ss_pred EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeeccccccCccccccccCeeEEE
Confidence 48999999999987443 233332221 1111222233 799999888776654333
No 256
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=55.51 E-value=28 Score=33.26 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCC--CHHHHHHHHhc-cCCceEEEE
Q 001941 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM--DGYEMLPCFES-FLLIAILVW 964 (993)
Q Consensus 900 ~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~m--dG~e~~~~Ir~-~~~~~~~~~ 964 (993)
.-+...|++.|++|+.+.+-.+|+..+......+.|++|+. ++. ...++++.||+ -..+||-+.
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~ 73 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLL 73 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEE
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEE
Confidence 45678888899999999999999999965567888999986 221 24678999975 578999555
No 257
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=54.21 E-value=83 Score=31.17 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=53.6
Q ss_pred CCeEEEE----eCChHHHHHHHHHHHhCCCEEEEEcC---HHHHHHHhCCCCCCcEEEEcCCCCCC--CHHHHHHHHhcc
Q 001941 886 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVER---GKKATELLMPPHQFDACFMDIQMPEM--DGYEMLPCFESF 956 (993)
Q Consensus 886 ~~~ILIV----dDn~~n~~vl~~~L~~~g~~v~~a~~---g~eAl~~~~~~~~~DlIlmDi~MP~m--dG~e~~~~Ir~~ 956 (993)
+++||+. |....-..++..+|+..||+|+..-. .++.++.+. ++++|+|.+-..|+.. +-.++.+++|+.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~-~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~ 81 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAI-ETDADAILVSSLYGHGEIDCRGLREKCIEA 81 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcCccccCHHHHHHHHHHHHhc
Confidence 4578887 77778888899999999999986543 456666664 5789999999888654 346678888877
No 258
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=53.24 E-value=31 Score=32.62 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHhCCCEEEEE---cCHHHHHHHhCCCCCCcEEEEcC-CCCCC-CHHHHHHHHhccCCc-eEEEE
Q 001941 896 NVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDI-QMPEM-DGYEMLPCFESFLLI-AILVW 964 (993)
Q Consensus 896 ~~n~~vl~~~L~~~g~~v~~a---~~g~eAl~~~~~~~~~DlIlmDi-~MP~m-dG~e~~~~Ir~~~~~-~~~~~ 964 (993)
+.-...+..+|++.||+|... .+.++..+.+. ..+||+|.+.. ..+.. ...++++.+|+..+. +|++-
T Consensus 14 ~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~-~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~G 87 (121)
T PF02310_consen 14 PLGLLYLAAYLRKAGHEVDILDANVPPEELVEALR-AERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVG 87 (121)
T ss_dssp SHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHH-HTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred hHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHh-cCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 344568899999999999877 23355556564 46799999988 44444 357788888887554 55443
No 259
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=50.48 E-value=42 Score=35.01 Aligned_cols=74 Identities=16% Similarity=0.106 Sum_probs=47.3
Q ss_pred EEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEE-c-CCCCCCCHHHHHHHHhcc-CCceEEEE
Q 001941 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM-D-IQMPEMDGYEMLPCFESF-LLIAILVW 964 (993)
Q Consensus 889 ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlm-D-i~MP~mdG~e~~~~Ir~~-~~~~~~~~ 964 (993)
|||||.......-+...|++.|+++.+..+....++.+. ...||.|++ - ..-|..++.+ .+.||++ ..+||+.-
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iilsgGpg~p~~~~~~-~~~i~~~~~~~PvLGI 78 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIE-ALLPLLIVISPGPCTPNEAGIS-LEAIRHFAGKLPILGV 78 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHH-hcCCCEEEEcCCCCChhhcchh-HHHHHHhccCCCEEEE
Confidence 899999999999999999999999998885532233332 235886655 1 1112223332 4445442 46899655
No 260
>PLN02335 anthranilate synthase
Probab=50.07 E-value=38 Score=36.38 Aligned_cols=77 Identities=12% Similarity=0.114 Sum_probs=47.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEc--CCCCCCCHHHHHHHHhccC-CceEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD--IQMPEMDGYEMLPCFESFL-LIAIL 962 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmD--i~MP~mdG~e~~~~Ir~~~-~~~~~ 962 (993)
.++|||||-......-+...|++.|+++.++.+....++.+. ...||.|++- -+-|...| ...+.+|+.. .+||+
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~-~~~~d~iVisgGPg~p~d~~-~~~~~~~~~~~~~PiL 95 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELK-RKNPRGVLISPGPGTPQDSG-ISLQTVLELGPLVPLF 95 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHH-hcCCCEEEEcCCCCChhhcc-chHHHHHHhCCCCCEE
Confidence 468999986666666788999999999998876432233332 2457776652 11122222 2456666653 58985
Q ss_pred EE
Q 001941 963 VW 964 (993)
Q Consensus 963 ~~ 964 (993)
.-
T Consensus 96 GI 97 (222)
T PLN02335 96 GV 97 (222)
T ss_pred Ee
Confidence 54
No 261
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=49.94 E-value=51 Score=32.84 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=35.8
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEc----CHHHHHH
Q 001941 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVE----RGKKATE 924 (993)
Q Consensus 884 l~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~----~g~eAl~ 924 (993)
+.|++|+|+.......+-+..+|.+.|+.|+.++ |.++++.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~ 70 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH 70 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh
Confidence 5689999999999999999999999999999998 5555544
No 262
>PRK05637 anthranilate synthase component II; Provisional
Probab=48.47 E-value=42 Score=35.74 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=49.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEE--cCCCCCCCHHHHHHHHhccC-CceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM--DIQMPEMDGYEMLPCFESFL-LIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlm--Di~MP~mdG~e~~~~Ir~~~-~~~~~~ 963 (993)
++||++|-...+..-+...|++.|+.+.++.+.... +.+. ...||.||+ -..-|..++ +..+.|++.. .+||+.
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~-~~l~-~~~~~~iIlsgGPg~~~d~~-~~~~li~~~~~~~PiLG 78 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPV-EEIL-AANPDLICLSPGPGHPRDAG-NMMALIDRTLGQIPLLG 78 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCH-HHHH-hcCCCEEEEeCCCCCHHHhh-HHHHHHHHHhCCCCEEE
Confidence 479999999988888999999999999998876433 3332 246888887 333332222 2345555433 588844
Q ss_pred E
Q 001941 964 W 964 (993)
Q Consensus 964 ~ 964 (993)
-
T Consensus 79 I 79 (208)
T PRK05637 79 I 79 (208)
T ss_pred E
Confidence 3
No 263
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=48.35 E-value=33 Score=42.11 Aligned_cols=44 Identities=23% Similarity=0.272 Sum_probs=31.8
Q ss_pred eEEEEEEEcCCCCChhhHhhccCCccccC------CCCcCcCCCccchHH
Q 001941 636 NLIVSVEDTGQGIPLEAQSRIFTPFMQVG------PSISRTHGGTGIGLS 679 (993)
Q Consensus 636 ~l~i~V~DtG~GI~~e~~~~IFepF~q~~------~s~s~~~~GtGLGLs 679 (993)
.+.+.|.|+|.|+..+++..+=++|++.+ ...++.+|=.|=.|+
T Consensus 49 t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGfRGeALa 98 (1142)
T KOG1977|consen 49 TFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGFRGEALA 98 (1142)
T ss_pred eeEEEEEecCCCccHHHHHHHHhhhhhhhceeccccccccccccchhhhh
Confidence 35689999999999999999988887542 233455655554444
No 264
>PRK10693 response regulator of RpoS; Provisional
Probab=43.83 E-value=49 Score=37.19 Aligned_cols=88 Identities=15% Similarity=0.255 Sum_probs=52.7
Q ss_pred EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEEEEeccCCcccccccCCCCCCCcccc
Q 001941 767 VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIM 846 (993)
Q Consensus 767 ~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~ 846 (993)
.+.++.+|++.+.. ..+|++++|..++..++ ...++.+++... ..|.+++.+.. ........ -..|..+++.
T Consensus 2 ~a~~g~~al~~l~~--~~pDlVL~D~~mp~~~G---le~~~~ir~~~~-~ipiI~lt~~~-~~~~~~~a-l~~Ga~dyl~ 73 (303)
T PRK10693 2 LAANGVDALELLGG--FTPDLIICDLAMPRMNG---IEFVEHLRNRGD-QTPVLVISATE-NMADIAKA-LRLGVQDVLL 73 (303)
T ss_pred EeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCH---HHHHHHHHhcCC-CCcEEEEECCC-CHHHHHHH-HHCCCcEEEE
Confidence 35778888888755 56899999988765432 234556665422 22444443322 21111111 2236789999
Q ss_pred cCCc-chHHHHHHHHHh
Q 001941 847 KPLR-SSMLAASLQRAM 862 (993)
Q Consensus 847 KPl~-~~~l~~~l~~~l 862 (993)
||+. ...+.+.+...+
T Consensus 74 KP~~~~~~L~~~i~~~l 90 (303)
T PRK10693 74 KPVKDLNRLREMVFACL 90 (303)
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 9994 777877776655
No 265
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=42.98 E-value=3.7e+02 Score=27.21 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 001941 388 AISTSIGILVIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKAEAA 433 (993)
Q Consensus 388 ~~~~~i~~lvi~~l~~~i~~~~~~-----r~~~l~~~~~~~~el~~~ae~a 433 (993)
.+..++.++++.+++.++++..+. |-..+........+.++++++.
T Consensus 11 ~~~~~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~ 61 (164)
T PRK14471 11 FFWQTILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNL 61 (164)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555554433 3344444444444444444443
No 266
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=42.55 E-value=1.6e+02 Score=25.98 Aligned_cols=72 Identities=17% Similarity=0.282 Sum_probs=47.2
Q ss_pred ccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHHHHHHHHHH
Q 001941 444 VSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDVLSLF 523 (993)
Q Consensus 444 vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ll~~vl~~~ 523 (993)
+.|-+||-|..|.+++.+-.....+++.++.+..+......+.. +.+.|--+. ....+|+.+.+++++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~-vh~~L~~~~--------~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIAL-VHEQLYQSE--------DLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHhcCC--------CCCeecHHHHHHHHHHHH
Confidence 56999999999999999877666666656666655555544433 333222111 224578999998888765
Q ss_pred h
Q 001941 524 S 524 (993)
Q Consensus 524 ~ 524 (993)
.
T Consensus 73 ~ 73 (76)
T PF07568_consen 73 R 73 (76)
T ss_pred H
Confidence 4
No 267
>PRK13566 anthranilate synthase; Provisional
Probab=41.75 E-value=90 Score=39.65 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=51.0
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEc--CCCCCCCHHHHHHHHhcc--CCc
Q 001941 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD--IQMPEMDGYEMLPCFESF--LLI 959 (993)
Q Consensus 884 l~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmD--i~MP~mdG~e~~~~Ir~~--~~~ 959 (993)
-.+++|||||-...+...+..+|++.|++|.+....... +.+. ...||.||+- -..|.. +.+.+.|+.. ..+
T Consensus 524 ~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~-~~~~-~~~~DgVVLsgGpgsp~d--~~~~~lI~~a~~~~i 599 (720)
T PRK13566 524 GEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAE-EMLD-RVNPDLVVLSPGPGRPSD--FDCKATIDAALARNL 599 (720)
T ss_pred CCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCCh-hHhh-hcCCCEEEECCCCCChhh--CCcHHHHHHHHHCCC
Confidence 357899999999888999999999999999998877542 3332 2468987751 111211 1234444442 368
Q ss_pred eEEEE
Q 001941 960 AILVW 964 (993)
Q Consensus 960 ~~~~~ 964 (993)
||+.-
T Consensus 600 PILGI 604 (720)
T PRK13566 600 PIFGV 604 (720)
T ss_pred cEEEE
Confidence 88544
No 268
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=41.37 E-value=32 Score=41.50 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.2
Q ss_pred EEEEEEcCCCCChhhHhhccCCcccc
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTPFMQV 663 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~ 663 (993)
.+.|+|+|.||-.++++-+-++|.+.
T Consensus 58 LlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 58 LLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred EEEEecCCCccchhhhHHHHHHhhhh
Confidence 47899999999999999999999653
No 269
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=40.91 E-value=47 Score=34.64 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=49.3
Q ss_pred EEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcC--CCCCCCHHHHHHHHhcc-CCceEEEE
Q 001941 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI--QMPEMDGYEMLPCFESF-LLIAILVW 964 (993)
Q Consensus 889 ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi--~MP~mdG~e~~~~Ir~~-~~~~~~~~ 964 (993)
||+||.......-+...|++.|+++.+..+.+..++.+. ...||.||+-- .-|..++.+ .+.||.+ ..+||+.-
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iils~GPg~p~~~~~~-~~~~~~~~~~~PiLGI 78 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADID-ALKPQKIVISPGPCTPDEAGIS-LDVIRHYAGRLPILGV 78 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHH-hcCCCEEEEcCCCCChHHCCcc-HHHHHHhcCCCCEEEE
Confidence 899999999999999999999999999888753334342 24688877621 123333332 3444432 46898665
No 270
>PLN03128 DNA topoisomerase 2; Provisional
Probab=40.91 E-value=37 Score=45.03 Aligned_cols=50 Identities=28% Similarity=0.552 Sum_probs=28.1
Q ss_pred EEEEEEcCCCCChhhHh--------hccCCcccc---CCCCcCcCCC-ccchHHHHHHHHHH
Q 001941 638 IVSVEDTGQGIPLEAQS--------RIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGR 687 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~--------~IFepF~q~---~~s~s~~~~G-tGLGLsI~k~LVe~ 687 (993)
.|+|.|+|.|||-+..+ -||.-.... +....+..|| .|.|.++|.-+-+.
T Consensus 87 sIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~ykvSGGlhGvGasvvNaLS~~ 148 (1135)
T PLN03128 87 TISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEKKTTGGRNGYGAKLANIFSTE 148 (1135)
T ss_pred eEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCccceeeccccCCCCeEEEeecCe
Confidence 48999999999987433 223222211 1111222233 68898877665543
No 271
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=40.03 E-value=91 Score=33.55 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=41.7
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCE--EEEEc--CHHHHHHHhCCCCCCcEEEEcCCCCC
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAA--VVCVE--RGKKATELLMPPHQFDACFMDIQMPE 943 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~--v~~a~--~g~eAl~~~~~~~~~DlIlmDi~MP~ 943 (993)
+|.-+|-|+...+.++..+++.|.. +.... +..+.++.. ....||+||+|..=+.
T Consensus 86 ~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-~~~~fDliFIDadK~~ 144 (219)
T COG4122 86 RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-LDGSFDLVFIDADKAD 144 (219)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-cCCCccEEEEeCChhh
Confidence 7999999999999999999999874 33444 445555542 2468999999997544
No 272
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=39.53 E-value=40 Score=35.49 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=49.5
Q ss_pred EEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCC-CHHH---HHHHHhcc-CCceEEE
Q 001941 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM-DGYE---MLPCFESF-LLIAILV 963 (993)
Q Consensus 889 ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~m-dG~e---~~~~Ir~~-~~~~~~~ 963 (993)
|||||.....-.-+...|++.|+++.+..+.+...+.+. ...||.||+ +|+- +=.+ ..+.||.+ ..+||+.
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~-~~~~d~iIl---sgGP~~p~~~~~~~~~i~~~~~~~PvLG 77 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIE-NMKPDFLMI---SPGPCSPNEAGISMEVIRYFAGKIPIFG 77 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHh-hCCCCEEEE---CCCCCChHhCCCchHHHHHhcCCCCEEE
Confidence 899999999999999999999999999888754444443 346888876 3332 1111 34555543 4689854
Q ss_pred E
Q 001941 964 W 964 (993)
Q Consensus 964 ~ 964 (993)
-
T Consensus 78 I 78 (195)
T PRK07649 78 V 78 (195)
T ss_pred E
Confidence 4
No 273
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=39.40 E-value=1.2e+02 Score=31.82 Aligned_cols=77 Identities=18% Similarity=0.193 Sum_probs=54.8
Q ss_pred CeEEEE----eCChHHHHHHHHHHHhCCCEEEEEc---CHHHHHHHhCCCCCCcEEEEcCCCCCC--CHHHHHHHHhccC
Q 001941 887 RKILIV----DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEM--DGYEMLPCFESFL 957 (993)
Q Consensus 887 ~~ILIV----dDn~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~~~~~~~~DlIlmDi~MP~m--dG~e~~~~Ir~~~ 957 (993)
++||+. |-...=..++..+|+..||+|+... ..++-++.+. ..+||+|-+-..|+.. +..++++.+|+..
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~-~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~ 161 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVK-EHKPDILGLSALMTTTMGGMKEVIEALKEAG 161 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHHCC
Confidence 477766 4445556788999999999997532 3456666664 5789999998877654 3466788888876
Q ss_pred C---ceEEEE
Q 001941 958 L---IAILVW 964 (993)
Q Consensus 958 ~---~~~~~~ 964 (993)
. ++|++-
T Consensus 162 ~~~~~~i~vG 171 (201)
T cd02070 162 LRDKVKVMVG 171 (201)
T ss_pred CCcCCeEEEE
Confidence 4 666665
No 274
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.07 E-value=6.2e+02 Score=28.61 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=80.7
Q ss_pred CceEEEeCCchhh---HHHHHHHHHHcCCEEEEe-----cCHHHHHHHHh--cCCCcccEEEEeccccccCccchHHHHH
Q 001941 738 GMKALVVDPRPIR---AKVSRYHIQRLGIQVEVV-----SDQLQCLSQIA--SGSKIINMILVEQEVWEKDTSVSTLFVN 807 (993)
Q Consensus 738 g~rvLvvdd~~~~---~~v~~~~L~~lG~~v~~~-----~~~~~al~~l~--~~~~~~~~ilid~~~~~~~~~~~~~~~~ 807 (993)
++-++.|.|++.. ...-.+.++++|+.++.. .+.++.++.+. +....++-+++...++..- +. ...+.
T Consensus 34 ~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~-~~-~~i~~ 111 (296)
T PRK14188 34 GLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHL-DS-EAVIQ 111 (296)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCC-CH-HHHHh
Confidence 3557777777653 455667899999999876 34555555554 3446678888887765221 11 01111
Q ss_pred HHHhcCCCCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCC
Q 001941 808 NLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887 (993)
Q Consensus 808 ~~~~~~~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 887 (993)
.+.-.... ....+...-.... + .....|..+..+...|... .-.+.|+
T Consensus 112 ~I~p~KDV---------DGl~~~n~g~l~~--~--~~~~~PcTp~ai~~ll~~~-------------------~i~~~Gk 159 (296)
T PRK14188 112 AIDPEKDV---------DGLHVVNAGRLAT--G--ETALVPCTPLGCMMLLRRV-------------------HGDLSGL 159 (296)
T ss_pred ccCccccc---------ccCChhhHHHHhC--C--CCCCcCCCHHHHHHHHHHh-------------------CCCCCCC
Confidence 11000000 0000000000000 0 0012355555555444321 0125689
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEc
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVE 917 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~ 917 (993)
+|.|+-.......-+...|.+.|+.|+..+
T Consensus 160 ~V~viGrs~~mG~PmA~~L~~~g~tVtv~~ 189 (296)
T PRK14188 160 NAVVIGRSNLVGKPMAQLLLAANATVTIAH 189 (296)
T ss_pred EEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence 999999999999999999999999999886
No 275
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=38.36 E-value=42 Score=34.98 Aligned_cols=78 Identities=19% Similarity=0.242 Sum_probs=50.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCE---EEEEcCHHHHHHHh-CCCCCCcEEEEcCCCCCCCH-HHHHHHHhc--cC-C
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAA---VVCVERGKKATELL-MPPHQFDACFMDIQMPEMDG-YEMLPCFES--FL-L 958 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~---v~~a~~g~eAl~~~-~~~~~~DlIlmDi~MP~mdG-~e~~~~Ir~--~~-~ 958 (993)
+++..||-|+.....++.-+++.|.. .+...|...++... .....||+|++|.=-..... .++++.|.+ +. .
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~ 145 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNE 145 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCC
Confidence 58999999999999999999987742 34456767777655 22467999999974444443 567777763 22 2
Q ss_pred ceEEEE
Q 001941 959 IAILVW 964 (993)
Q Consensus 959 ~~~~~~ 964 (993)
..+|++
T Consensus 146 ~~~ii~ 151 (183)
T PF03602_consen 146 DGLIII 151 (183)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 344555
No 276
>CHL00101 trpG anthranilate synthase component 2
Probab=38.24 E-value=52 Score=34.34 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=36.6
Q ss_pred EEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEE
Q 001941 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM 937 (993)
Q Consensus 889 ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlm 937 (993)
|||||-.......+...|++.|+++..+.+....++.+. ...||.|++
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~-~~~~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIK-NLNIRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHh-hCCCCEEEE
Confidence 899999998888899999999999998887642233332 235888775
No 277
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=38.17 E-value=1.2e+02 Score=28.62 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=48.7
Q ss_pred eCChHHHHHHHHHHHhCCCEEEEEc---CHHHHHHHhCCCCCCcEEEEcCCCCCCC-HHHHHHHHhccCC--ceEEEE
Q 001941 893 DDNNVNLKVAAAGLKRYGAAVVCVE---RGKKATELLMPPHQFDACFMDIQMPEMD-GYEMLPCFESFLL--IAILVW 964 (993)
Q Consensus 893 dDn~~n~~vl~~~L~~~g~~v~~a~---~g~eAl~~~~~~~~~DlIlmDi~MP~md-G~e~~~~Ir~~~~--~~~~~~ 964 (993)
|........+..+|++.|+++.... ...+.++.+. ..+||+|.+.+.+.... .++.++.+|+..+ ++|++-
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~-~~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvG 86 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAK-EEDADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVG 86 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHH-HcCCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEe
Confidence 3444556778889999999998664 3344455554 46799999988876543 5666777777665 666554
No 278
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=38.09 E-value=27 Score=47.02 Aligned_cols=51 Identities=25% Similarity=0.570 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCChhhHhh--------ccCCcccc---CCCCcCcCCC-ccchHHHHHHHHHHc
Q 001941 638 IVSVEDTGQGIPLEAQSR--------IFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGRM 688 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~--------IFepF~q~---~~s~s~~~~G-tGLGLsI~k~LVe~m 688 (993)
.|+|.|+|.|||-+..+. ||.-.... +....+..|| .|.|.++|.-+-+.+
T Consensus 95 ~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~f 157 (1388)
T PTZ00108 95 EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTKF 157 (1388)
T ss_pred eEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCccccccccceE
Confidence 489999999999875432 34332221 1111222234 699999887766554
No 279
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=36.72 E-value=1.1e+02 Score=31.29 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=56.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhC--CCEEEEEcCH-------HHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRY--GAAVVCVERG-------KKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF 956 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~--g~~v~~a~~g-------~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~ 956 (993)
+.+|.++-..+...+.+...|++. |..++...+| ++.++.+. ...+|+|++-+-+|... .++.+.|+.
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~-~~~pdiv~vglG~PkQE--~~~~~~~~~ 124 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRIN-ASGPDIVFVGLGAPKQE--RWIARHRQR 124 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHH-HcCCCEEEEECCCCHHH--HHHHHHHHH
Confidence 468888888888888888888765 5677766665 23333443 46799999999888866 458899999
Q ss_pred CCceEEEE
Q 001941 957 LLIAILVW 964 (993)
Q Consensus 957 ~~~~~~~~ 964 (993)
...+++++
T Consensus 125 l~~~v~i~ 132 (172)
T PF03808_consen 125 LPAGVIIG 132 (172)
T ss_pred CCCCEEEE
Confidence 99987554
No 280
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=36.10 E-value=1.2e+02 Score=31.63 Aligned_cols=74 Identities=14% Similarity=0.233 Sum_probs=45.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEE--cCCCCCCCHHHHHHHHhcc-CCceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM--DIQMPEMDGYEMLPCFESF-LLIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlm--Di~MP~mdG~e~~~~Ir~~-~~~~~~~ 963 (993)
++|||||..+..-.-+..+|++.|+++.+......-.+.+ ..+|.|++ -...|...+ ++.+.||+. ..+|++.
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l---~~~d~iIi~gGp~~~~~~~-~~~~~i~~~~~~~PiLG 77 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEV---ENFSHILISPGPDVPRAYP-QLFAMLERYHQHKSILG 77 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHh---ccCCEEEECCCCCChHHhh-HHHHHHHHhcCCCCEEE
Confidence 5899999988777779999999999888877432212333 24787663 122221112 234555542 3688865
Q ss_pred E
Q 001941 964 W 964 (993)
Q Consensus 964 ~ 964 (993)
-
T Consensus 78 I 78 (190)
T PRK06895 78 V 78 (190)
T ss_pred E
Confidence 5
No 281
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=35.38 E-value=6.3e+02 Score=27.70 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001941 387 LAISTSIGILVIASLVGHIFQATVN 411 (993)
Q Consensus 387 ~~~~~~i~~lvi~~l~~~i~~~~~~ 411 (993)
+.+..++-++++.+++.++++..+.
T Consensus 7 t~~~qiInFlILv~lL~~fl~kPi~ 31 (250)
T PRK14474 7 TVVAQIINFLILVYLLRRFLYKPII 31 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666666655443
No 282
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=35.14 E-value=5.8e+02 Score=27.12 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 001941 386 LLAISTSIGILVIASLVGHIFQATV-----NRIAKVEEDYHGMMELKKKAEAA 433 (993)
Q Consensus 386 ~~~~~~~i~~lvi~~l~~~i~~~~~-----~r~~~l~~~~~~~~el~~~ae~a 433 (993)
|..+..++.++++.+++.++++..+ .|...+++......+.++++++.
T Consensus 49 ~~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~ 101 (205)
T PRK06231 49 WVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQL 101 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555443 34444555444444444444443
No 283
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.42 E-value=1.7e+02 Score=28.69 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHhHHHHHHHHHh
Q 001941 89 LITWLLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILIS 149 (993)
Q Consensus 89 ~~~~~l~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~l~~l~~ 149 (993)
.++++++|+++.+++..+......++ ..+...-++.-.-|.++=+...+|+..-|-|+.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~~~q--~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~ 60 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQQKQ--AKLEQELEQAKQELEQYKQEVNDHFAQTAELLD 60 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778777777777776664332 233444445555555555555555555555544
No 284
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=33.90 E-value=2.4e+02 Score=22.42 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001941 385 PLLAISTSIGILVIASLVGHIFQATVNRIA 414 (993)
Q Consensus 385 ~~~~~~~~i~~lvi~~l~~~i~~~~~~r~~ 414 (993)
++..+...+.++.+...+|..++..++.++
T Consensus 4 wlt~iFsvvIil~If~~iGl~IyQkikqIr 33 (49)
T PF11044_consen 4 WLTTIFSVVIILGIFAWIGLSIYQKIKQIR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555555555554443
No 285
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.87 E-value=7.2e+02 Score=27.86 Aligned_cols=57 Identities=16% Similarity=0.079 Sum_probs=43.6
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCC
Q 001941 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP 942 (993)
Q Consensus 884 l~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP 942 (993)
+.|++++|++......+-+..+|...|..|+++++-..-++... ...|+|+.-+--|
T Consensus 150 l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~--~~ADIvI~Avgk~ 206 (279)
T PRK14178 150 IAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAEL--RQADILVSAAGKA 206 (279)
T ss_pred CCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHH--hhCCEEEECCCcc
Confidence 56899999999999999999999999999988776665555432 2467777766433
No 286
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.70 E-value=1e+02 Score=26.18 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=29.3
Q ss_pred hccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 001941 441 LATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALV 486 (993)
Q Consensus 441 la~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~ 486 (993)
+...-||+.+=|..|.|++++ ...++..+|++.+....+...
T Consensus 16 lR~~RHD~~NhLqvI~gllql----g~~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 16 LRAQRHDFLNHLQVIYGLLQL----GKYEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHH
Confidence 344579999999999999886 222345677777766655553
No 287
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=33.16 E-value=1.1e+02 Score=32.54 Aligned_cols=82 Identities=15% Similarity=0.179 Sum_probs=53.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCC--EEE-EEcCHHHHHHHhCCC---CCCcEEEEcCCCCCCCHHHHHHHH-hccCC
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMPP---HQFDACFMDIQMPEMDGYEMLPCF-ESFLL 958 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~--~v~-~a~~g~eAl~~~~~~---~~~DlIlmDi~MP~mdG~e~~~~I-r~~~~ 958 (993)
+-+|.-+|-|+...++++..+++.|+ .+. ...++.+.+..+... ..||+||+|..= -+-.+..+.+ +.+..
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K--~~y~~y~~~~~~ll~~ 147 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK--RNYLEYFEKALPLLRP 147 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG--GGHHHHHHHHHHHEEE
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc--cchhhHHHHHhhhccC
Confidence 34899999999999999999999886 333 446677777765222 369999999953 2333434444 44444
Q ss_pred ceEEEEcccccchh
Q 001941 959 IAILVWKLNLKISW 972 (993)
Q Consensus 959 ~~~~~~~~~~~~~~ 972 (993)
-.+|+. .|+-|
T Consensus 148 ggvii~---DN~l~ 158 (205)
T PF01596_consen 148 GGVIIA---DNVLW 158 (205)
T ss_dssp EEEEEE---ETTTG
T ss_pred CeEEEE---ccccc
Confidence 455554 45555
No 288
>PRK00811 spermidine synthase; Provisional
Probab=32.69 E-value=1.7e+02 Score=32.63 Aligned_cols=76 Identities=20% Similarity=0.176 Sum_probs=49.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCC------CEE-EEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCC-----HHHHHHHH-
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYG------AAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMD-----GYEMLPCF- 953 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g------~~v-~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~md-----G~e~~~~I- 953 (993)
.+|.+||=|+...+.++..+...+ -++ ....|+.+-+... ...||+|++|..-|..- .-++.+.+
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~--~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~ 178 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET--ENSFDVIIVDSTDPVGPAEGLFTKEFYENCK 178 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC--CCcccEEEECCCCCCCchhhhhHHHHHHHHH
Confidence 479999999999999999886421 233 3456666655542 35799999998666422 23455555
Q ss_pred hccCCceEEEE
Q 001941 954 ESFLLIAILVW 964 (993)
Q Consensus 954 r~~~~~~~~~~ 964 (993)
|.+..-.+++.
T Consensus 179 ~~L~~gGvlv~ 189 (283)
T PRK00811 179 RALKEDGIFVA 189 (283)
T ss_pred HhcCCCcEEEE
Confidence 44556666554
No 289
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=32.67 E-value=2.1e+02 Score=32.30 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=28.9
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
.+.++++.........-...-..|..+++.+|.....+...+.++.
T Consensus 41 ~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 41 RRRVVLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADLD 86 (322)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhc
Confidence 4555555544332222222223377789999999999999988763
No 290
>PRK10481 hypothetical protein; Provisional
Probab=31.99 E-value=2.2e+02 Score=30.81 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=39.2
Q ss_pred HHHHHHhCCCEEEEEc-----CHH----HHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEE
Q 001941 902 AAAGLKRYGAAVVCVE-----RGK----KATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVW 964 (993)
Q Consensus 902 l~~~L~~~g~~v~~a~-----~g~----eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~ 964 (993)
.+.+++ .|+++..+. ... +|...+. ....|+|+|||. ++.. +..+.++++.++|||.-
T Consensus 146 ~~kw~~-~G~~v~~~~aspy~~~~~~l~~aa~~L~-~~gaD~Ivl~C~--G~~~-~~~~~le~~lg~PVI~~ 212 (224)
T PRK10481 146 AQKWQV-LQKPPVFALASPYHGSEEELIDAGKELL-DQGADVIVLDCL--GYHQ-RHRDLLQKALDVPVLLS 212 (224)
T ss_pred HHHHHh-cCCceeEeecCCCCCCHHHHHHHHHHhh-cCCCCEEEEeCC--CcCH-HHHHHHHHHHCcCEEcH
Confidence 355555 499877555 122 2233332 356899999996 5555 77889999999999864
No 291
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=31.56 E-value=2.1e+02 Score=34.32 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=48.7
Q ss_pred hccCCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCH---HHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCC
Q 001941 882 HLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERG---KKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLL 958 (993)
Q Consensus 882 ~~l~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g---~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~ 958 (993)
..+.|+++.|.-+.+........+.++.|.+++.+... .+.++.+......+.+++| +.+.+|+.+.+++...
T Consensus 323 ~~L~GkrvaI~~~~~~~~~~~~~l~~ElGmevv~~~~~~~~~~~~~~~~~~~~~~~i~i~----d~~~~e~~~~~~~~~p 398 (461)
T TIGR01860 323 ERLQGKKMCIWTGGPRLWHWTKALEDDLGMQVVAMSSKFGHQEDFEKVIARGKEGTIYID----DGNELEFFEVLDLIKP 398 (461)
T ss_pred HHcCCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeeecCCHHHHHHHHHhcCCCeEEEe----CCCHHHHHHHHHhcCC
Confidence 45779999998776554444444444799998876553 4444444222223444443 3466888888888777
Q ss_pred ceEEEE
Q 001941 959 IAILVW 964 (993)
Q Consensus 959 ~~~~~~ 964 (993)
.-+|.-
T Consensus 399 Dliig~ 404 (461)
T TIGR01860 399 DVIFTG 404 (461)
T ss_pred CEEEeC
Confidence 755554
No 292
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.28 E-value=7.9e+02 Score=27.56 Aligned_cols=176 Identities=18% Similarity=0.129 Sum_probs=95.2
Q ss_pred CceEEEeCCchhh---HHHHHHHHHHcCCEEEEec-----CHHHHHHHHhc--CCCcccEEEEeccccccCccchHHHHH
Q 001941 738 GMKALVVDPRPIR---AKVSRYHIQRLGIQVEVVS-----DQLQCLSQIAS--GSKIINMILVEQEVWEKDTSVSTLFVN 807 (993)
Q Consensus 738 g~rvLvvdd~~~~---~~v~~~~L~~lG~~v~~~~-----~~~~al~~l~~--~~~~~~~ilid~~~~~~~~~~~~~~~~ 807 (993)
++-++.|.|++.. ...-...++++|+.++... +.++.++.+.. .....+-+++-...+..- .....++
T Consensus 33 ~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i--~~~~i~~ 110 (281)
T PRK14183 33 GLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHI--DTTKILE 110 (281)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCC--CHHHHHh
Confidence 4567777777654 3455678899999998764 44455555443 345667777776654211 1111111
Q ss_pred HHHhcCCCCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCC
Q 001941 808 NLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887 (993)
Q Consensus 808 ~~~~~~~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 887 (993)
.+...... ....+...-.... + ..-..|..+......|... .-.+.|+
T Consensus 111 ~I~p~KDV---------DGl~~~n~g~l~~--g--~~~~~PcTp~avi~lL~~~-------------------~i~l~Gk 158 (281)
T PRK14183 111 AIDPKKDV---------DGFHPYNVGRLVT--G--LDGFVPCTPLGVMELLEEY-------------------EIDVKGK 158 (281)
T ss_pred ccCchhcc---------cccChhhhhHHhc--C--CCCCCCCcHHHHHHHHHHc-------------------CCCCCCC
Confidence 11000000 0000000000000 0 0011344444444433321 1135689
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHH
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEM 949 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~ 949 (993)
+++||-.....-+=+..+|.+.|..|+.+++-..-+.... ...|+|+.-+--|+.-.-+.
T Consensus 159 ~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~--~~ADIvV~AvGkp~~i~~~~ 218 (281)
T PRK14183 159 DVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHT--KKADIVIVGVGKPNLITEDM 218 (281)
T ss_pred EEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHH--hhCCEEEEecCcccccCHHH
Confidence 9999999999999999999989999998876555444331 24688887776666544333
No 293
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=31.27 E-value=5.4e+02 Score=30.77 Aligned_cols=62 Identities=23% Similarity=0.231 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHhhHh
Q 001941 389 ISTSIGILVIASLVGHIFQATV-----NRIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIRT 450 (993)
Q Consensus 389 ~~~~i~~lvi~~l~~~i~~~~~-----~r~~~l~~~~~~~~el~~~ae~a~~aKs~Fla~vSHELRT 450 (993)
+..++.++++.+++.++++..+ .|..++.+...+..+.+++++++...-.+-++....|-+.
T Consensus 5 i~qlInFlIl~~lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~ 71 (445)
T PRK13428 5 IGQLIGFAVIVFLVWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAAR 71 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555544333 3334444444444444444444333323334444333333
No 294
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=31.26 E-value=12 Score=45.52 Aligned_cols=49 Identities=33% Similarity=0.563 Sum_probs=29.7
Q ss_pred EEEEEcCCCCChhhHhh--------ccCCcccc---CCCCcC-cCCCccchHHHHHHHHHH
Q 001941 639 VSVEDTGQGIPLEAQSR--------IFTPFMQV---GPSISR-THGGTGIGLSISKYLVGR 687 (993)
Q Consensus 639 i~V~DtG~GI~~e~~~~--------IFepF~q~---~~s~s~-~~~GtGLGLsI~k~LVe~ 687 (993)
|+|.|+|.|||-+..++ ||...... +..... ..|=.|.|.+.|..|-+.
T Consensus 70 isV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS~~ 130 (635)
T COG0187 70 ISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALSTW 130 (635)
T ss_pred EEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCccEeecCCCccceEEEecccce
Confidence 89999999999987544 44332111 111111 123378899888777654
No 295
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=31.19 E-value=1.5e+02 Score=31.11 Aligned_cols=56 Identities=23% Similarity=0.359 Sum_probs=41.5
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCC---CEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCC
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYG---AAVVCVERGKKATELLMPPHQFDACFMDIQMP 942 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g---~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP 942 (993)
.+++.||-|..-..++..-++..| .......|...++..+.....||+|++|.=-.
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCc
Confidence 479999999999999988888766 23334455557777775434599999998665
No 296
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=30.84 E-value=9.8 Score=48.42 Aligned_cols=17 Identities=35% Similarity=0.751 Sum_probs=13.9
Q ss_pred EEEEEEcCCCCChhhHh
Q 001941 638 IVSVEDTGQGIPLEAQS 654 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~ 654 (993)
.|+|+|+|.|||-+..+
T Consensus 162 sItV~DnGRGIPvd~h~ 178 (903)
T PTZ00109 162 SVEISDNGRGIPCDVSE 178 (903)
T ss_pred eEEEEeCCccccccccc
Confidence 38999999999986543
No 297
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=30.83 E-value=2.2e+02 Score=27.37 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=46.8
Q ss_pred eCChHHHHHHHHHHHhCCCEEEEEcC---HHHHHHHhCCCCCCcEEEEcCCCCCCC--HHHHHHHHhccC--CceEEEE
Q 001941 893 DDNNVNLKVAAAGLKRYGAAVVCVER---GKKATELLMPPHQFDACFMDIQMPEMD--GYEMLPCFESFL--LIAILVW 964 (993)
Q Consensus 893 dDn~~n~~vl~~~L~~~g~~v~~a~~---g~eAl~~~~~~~~~DlIlmDi~MP~md--G~e~~~~Ir~~~--~~~~~~~ 964 (993)
|....=...+..+|+..||+|..... .++.++.+. ...+|+|.+-..++..- --++++++|+.. .+++++-
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~-~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAI-QEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 34444456778889999999986543 456667664 46899999987775432 245677777763 3444444
No 298
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=30.63 E-value=3.4e+02 Score=33.16 Aligned_cols=79 Identities=20% Similarity=0.085 Sum_probs=48.5
Q ss_pred hhccCCCeEEEEeCChHHHHHHHHHHH-hCCCEEEEEcCHH---HHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc
Q 001941 881 RHLLLGRKILIVDDNNVNLKVAAAGLK-RYGAAVVCVERGK---KATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF 956 (993)
Q Consensus 881 ~~~l~~~~ILIVdDn~~n~~vl~~~L~-~~g~~v~~a~~g~---eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~ 956 (993)
+..+.||++.|.-|..... -+..+|. +.|.+++.+.... +-.+.....-..+.++.| +++-+|..+.+++.
T Consensus 323 ~~~L~GKrvai~~gg~~~~-~~~~~l~~ElGmevv~~~t~~~~~~d~~~~~~~~~~~~~~i~----D~~~~e~~~~l~~~ 397 (513)
T TIGR01861 323 KERLKGKKVCLWPGGSKLW-HWAHVIEEEMGLKVVSVYSKFGHQGDMEKGVARCGEGALAID----DPNELEGLEAMEML 397 (513)
T ss_pred HHhcCCCEEEEECCchHHH-HHHHHHHHhCCCEEEEEeccCCCHHHHHHHHHhCCCCcEEec----CCCHHHHHHHHHhc
Confidence 3567899999987764444 4555565 6999998775532 212222111123455543 45678888888888
Q ss_pred CCceEEEE
Q 001941 957 LLIAILVW 964 (993)
Q Consensus 957 ~~~~~~~~ 964 (993)
...-+|.-
T Consensus 398 ~~Dllig~ 405 (513)
T TIGR01861 398 KPDIILTG 405 (513)
T ss_pred CCCEEEec
Confidence 77766654
No 299
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=29.82 E-value=8.9e+02 Score=29.56 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=45.1
Q ss_pred hccCCCeEEEEeCChHHHHHHHHHH-HhCCCEEEEEcCHH--------HHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHH
Q 001941 882 HLLLGRKILIVDDNNVNLKVAAAGL-KRYGAAVVCVERGK--------KATELLMPPHQFDACFMDIQMPEMDGYEMLPC 952 (993)
Q Consensus 882 ~~l~~~~ILIVdDn~~n~~vl~~~L-~~~g~~v~~a~~g~--------eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~ 952 (993)
..+.|+++.|+-|.....- +..+| ++.|+.+..+.+-. +.++.+ ...+++. .|.+++-+.
T Consensus 301 ~~l~Gkrv~I~gd~~~a~~-l~~~L~~ELGm~vv~~g~~~~~~~~~~~~~~~~~----~~~~~i~------~D~~ei~~~ 369 (513)
T CHL00076 301 QNLTGKKAVVFGDATHAAS-MTKILAREMGIRVSCAGTYCKHDAEWFKEQVQGF----CDEILIT------DDHTEVGDM 369 (513)
T ss_pred cccCCCEEEEEcCchHHHH-HHHHHHHhCCCEEEEecCcccchhHHHHHHHHHh----ccCcEEe------cCHHHHHHH
Confidence 3567899999987655444 44555 68999998664321 122222 1234443 378999999
Q ss_pred HhccCCceEEEE
Q 001941 953 FESFLLIAILVW 964 (993)
Q Consensus 953 Ir~~~~~~~~~~ 964 (993)
|++....-++.-
T Consensus 370 I~~~~pdliiGs 381 (513)
T CHL00076 370 IARVEPSAIFGT 381 (513)
T ss_pred HHhcCCCEEEEC
Confidence 999776655554
No 300
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=29.59 E-value=75 Score=33.09 Aligned_cols=82 Identities=12% Similarity=0.038 Sum_probs=52.4
Q ss_pred EEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcC--CCCCCCHHHHHHHHhc-cCCceEEEEc
Q 001941 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDI--QMPEMDGYEMLPCFES-FLLIAILVWK 965 (993)
Q Consensus 889 ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi--~MP~mdG~e~~~~Ir~-~~~~~~~~~~ 965 (993)
||+||.......-+..+|++.|+++.++.+..-.++.+. ...||.|++-- +-|..+|. ..+.||. ...+||+.-
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~~iilsgGP~~~~~~~~-~~~~i~~~~~~~PiLGI- 78 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIE-QLAPSHLVISPGPCTPNEAGI-SLAVIRHFADKLPILGV- 78 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHH-hcCCCeEEEcCCCCChHhCCC-chHHHHHhcCCCCEEEE-
Confidence 899999999999899999999999999997643233342 23578766511 11222332 2334433 247999776
Q ss_pred ccccchhhhhccccC
Q 001941 966 LNLKISWKRSYKLLN 980 (993)
Q Consensus 966 ~~~~~~~~~~~~~~~ 980 (993)
|+-+.+|+
T Consensus 79 -------C~G~Qlla 86 (191)
T PRK06774 79 -------CLGHQALG 86 (191)
T ss_pred -------CHHHHHHH
Confidence 66555543
No 301
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=29.24 E-value=1.7e+02 Score=30.79 Aligned_cols=65 Identities=18% Similarity=0.301 Sum_probs=48.5
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCC----CH------HHHHHHHhccC
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM----DG------YEMLPCFESFL 957 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~m----dG------~e~~~~Ir~~~ 957 (993)
+|+|||=..-|..-+..+|++.|+++..+.+.++ + ..+|.||+ |+- +. ..+.+.|++.
T Consensus 2 ~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~----~---~~~d~iIl----PG~G~~~~~~~~l~~~~l~~~i~~~- 69 (196)
T PRK13170 2 NVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV----I---LAADKLFL----PGVGTAQAAMDQLRERELIDLIKAC- 69 (196)
T ss_pred eEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH----h---CCCCEEEE----CCCCchHHHHHHHHHcChHHHHHHc-
Confidence 6999998888888899999999999999988754 2 23788775 773 22 1246677765
Q ss_pred CceEEEE
Q 001941 958 LIAILVW 964 (993)
Q Consensus 958 ~~~~~~~ 964 (993)
..||+.-
T Consensus 70 ~~PilGI 76 (196)
T PRK13170 70 TQPVLGI 76 (196)
T ss_pred CCCEEEE
Confidence 6899666
No 302
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=29.19 E-value=2e+02 Score=27.93 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=69.1
Q ss_pred CcccCCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccch-HHHHHHHHh
Q 001941 733 SSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVS-TLFVNNLRK 811 (993)
Q Consensus 733 ~~~~~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~-~~~~~~~~~ 811 (993)
...+.|++...||+|...+..+...|..-|.+|..-... ..+ ....+|++++-......+.... ..++.+-
T Consensus 6 ~~~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~----~~l--p~~hYD~~Ll~vavtfr~n~tm~~~~l~~A-- 77 (140)
T COG4999 6 TACLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTF----SAL--PPAHYDMMLLGVAVTFRENLTMQHERLAKA-- 77 (140)
T ss_pred hhhhccceeEEecCccHHHHHHHHHHhcCCceEEecccc----ccc--ChhhhceeeecccccccCCchHHHHHHHHH--
Confidence 345789999999999999999999999999998764332 111 1256888887766544332221 1111111
Q ss_pred cCCCCCceEEEEecc-CCcccccccCCCCCCCcccccCCcchHHHHHH
Q 001941 812 LGCGFQSKLFLLANS-ISSSRANTSTDGVSIPSVIMKPLRSSMLAASL 858 (993)
Q Consensus 812 ~~~~~~~~~~lla~~-~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l 858 (993)
... .-.++++-+ .....++..+.. |....+.||+++.+|...+
T Consensus 78 l~m---td~vilalPs~~qv~AeqLkQ~-g~~~CllKPls~~rLlptl 121 (140)
T COG4999 78 LSM---TDFVILALPSHAQVNAEQLKQD-GAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred Hhh---hcceEEecCcHHHHhHHHHhhc-chHhHhhCcchhhhhHHHH
Confidence 110 122334332 233334444443 6678999999998887744
No 303
>PRK05670 anthranilate synthase component II; Provisional
Probab=29.07 E-value=1e+02 Score=32.09 Aligned_cols=72 Identities=22% Similarity=0.175 Sum_probs=45.5
Q ss_pred EEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCC----CHHHHHHHHhcc-CCceEEE
Q 001941 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM----DGYEMLPCFESF-LLIAILV 963 (993)
Q Consensus 889 ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~m----dG~e~~~~Ir~~-~~~~~~~ 963 (993)
|||+|-......-+...|.+.|+++.+........+.+. ...||.||+ +|+. |--...+.||+. ..+||+.
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~-~~~~dglIl---sgGpg~~~d~~~~~~~l~~~~~~~PvLG 77 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIE-ALNPDAIVL---SPGPGTPAEAGISLELIREFAGKVPILG 77 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHH-hCCCCEEEE---cCCCCChHHcchHHHHHHHhcCCCCEEE
Confidence 899999999888999999999999998877542222222 234887766 2221 111233445543 3478865
Q ss_pred E
Q 001941 964 W 964 (993)
Q Consensus 964 ~ 964 (993)
-
T Consensus 78 I 78 (189)
T PRK05670 78 V 78 (189)
T ss_pred E
Confidence 5
No 304
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.75 E-value=8.8e+02 Score=27.27 Aligned_cols=170 Identities=11% Similarity=0.138 Sum_probs=91.5
Q ss_pred CceEEEeCCchhh---HHHHHHHHHHcCCEEEEec-----CHHHHHHHHhc--CCCcccEEEEeccccccCccchHHHHH
Q 001941 738 GMKALVVDPRPIR---AKVSRYHIQRLGIQVEVVS-----DQLQCLSQIAS--GSKIINMILVEQEVWEKDTSVSTLFVN 807 (993)
Q Consensus 738 g~rvLvvdd~~~~---~~v~~~~L~~lG~~v~~~~-----~~~~al~~l~~--~~~~~~~ilid~~~~~~~~~~~~~~~~ 807 (993)
++-++.|.|++.. ...-.+.++++|+.++... +.++.++.+.. .....+-+++...++..- .....+.
T Consensus 34 ~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i--~~~~i~~ 111 (286)
T PRK14175 34 KLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQV--SEQKILE 111 (286)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCC--CHHHHHh
Confidence 3567778877754 3455678899999998762 33455555543 446677888877664321 1111111
Q ss_pred HHHhcCCCCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCC
Q 001941 808 NLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887 (993)
Q Consensus 808 ~~~~~~~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 887 (993)
.+.-.... ...++...-.... + ..-..|..+..+...+... .-.+.|+
T Consensus 112 ~I~p~KDV---------DGl~~~n~g~l~~--~--~~~~~PcTp~ai~~ll~~~-------------------~i~l~Gk 159 (286)
T PRK14175 112 AINPEKDV---------DGFHPINIGKLYI--D--EQTFVPCTPLGIMEILKHA-------------------DIDLEGK 159 (286)
T ss_pred ccCcccCc---------ccCCccchHhHhc--C--CCCCCCCcHHHHHHHHHHc-------------------CCCCCCC
Confidence 11100000 0000000000000 0 0112455555555544421 0135689
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCC
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE 943 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~ 943 (993)
+++||-.-...-+-+..+|...|++|+++++-..-+.... ...|+|+.-+--|.
T Consensus 160 ~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~--~~ADIVIsAvg~p~ 213 (286)
T PRK14175 160 NAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYL--KDADVIVSAVGKPG 213 (286)
T ss_pred EEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHH--hhCCEEEECCCCCc
Confidence 9999999998888999999999999988877443333221 23566666555554
No 305
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=28.72 E-value=4.1e+02 Score=28.61 Aligned_cols=85 Identities=22% Similarity=0.199 Sum_probs=51.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCC----EEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHH-HHHHHHhccCCce
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGA----AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY-EMLPCFESFLLIA 960 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~----~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~-e~~~~Ir~~~~~~ 960 (993)
|+-|-|+.|... +......|...|. ++.+.+..++++.-+ ...|.++.|+.. .|-. ++++.++--..-+
T Consensus 70 GR~vCIvp~~~~-~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~---~~iDF~vVDc~~--~d~~~~vl~~~~~~~~Ga 143 (218)
T PF07279_consen 70 GRHVCIVPDEQS-LSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL---KGIDFVVVDCKR--EDFAARVLRAAKLSPRGA 143 (218)
T ss_pred CeEEEEcCChhh-HHHHHHHHhhccccccceEEecCCHHHHHhhc---cCCCEEEEeCCc--hhHHHHHHHHhccCCCce
Confidence 445666666555 4445566665564 333433455566555 358999999984 4555 7888888655556
Q ss_pred EEEE-cccc----cchhhhhc
Q 001941 961 ILVW-KLNL----KISWKRSY 976 (993)
Q Consensus 961 ~~~~-~~~~----~~~~~~~~ 976 (993)
|+++ -... ..+|.++-
T Consensus 144 VVV~~Na~~r~~~~~~w~~~~ 164 (218)
T PF07279_consen 144 VVVCYNAFSRSTNGFSWRSVL 164 (218)
T ss_pred EEEEeccccCCcCCccHHHhc
Confidence 6554 3333 25787654
No 306
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=28.07 E-value=1.5e+02 Score=28.52 Aligned_cols=65 Identities=18% Similarity=0.133 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCCEEEEEc--CHHHHHHHhCCCCCCcEEEEcCCCCCC-CHHHHHHHHhccCCceEEE
Q 001941 899 LKVAAAGLKRYGAAVVCVE--RGKKATELLMPPHQFDACFMDIQMPEM-DGYEMLPCFESFLLIAILV 963 (993)
Q Consensus 899 ~~vl~~~L~~~g~~v~~a~--~g~eAl~~~~~~~~~DlIlmDi~MP~m-dG~e~~~~Ir~~~~~~~~~ 963 (993)
...+..+|++.|+++.... .-++.++.+....+||+|.+.++-+.. ...++++.||+..+.+.|+
T Consensus 5 l~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv 72 (127)
T cd02068 5 LAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVV 72 (127)
T ss_pred HHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEE
Confidence 4567889998898776544 234445555322679999999866555 3577899999977644433
No 307
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=27.74 E-value=6.8e+02 Score=25.66 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 001941 391 TSIGILVIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKAEA 432 (993)
Q Consensus 391 ~~i~~lvi~~l~~~i~~~~~~-----r~~~l~~~~~~~~el~~~ae~ 432 (993)
.++.++++.+++.++++..+. |...+.+......+.++++++
T Consensus 24 ~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~ 70 (173)
T PRK13453 24 TVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQK 70 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555444433 334444444444444444333
No 308
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=26.87 E-value=3.9e+02 Score=29.30 Aligned_cols=82 Identities=15% Similarity=0.197 Sum_probs=52.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCC--EEE-EEcCHHHHHHHhCC----CCCCcEEEEcCCCCCCCHHHHHHH-HhccCC
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGA--AVV-CVERGKKATELLMP----PHQFDACFMDIQMPEMDGYEMLPC-FESFLL 958 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~--~v~-~a~~g~eAl~~~~~----~~~~DlIlmDi~MP~mdG~e~~~~-Ir~~~~ 958 (993)
-+|.-+|=|+....+++..+++.|+ .+. ...+..+.+..+.. ...||+||+|..= .. =.+..+. ++....
T Consensus 105 g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK-~~-Y~~y~~~~l~ll~~ 182 (247)
T PLN02589 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADK-DN-YINYHKRLIDLVKV 182 (247)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCH-HH-hHHHHHHHHHhcCC
Confidence 3799999999999999999999885 233 34555666655421 2479999999982 22 2222332 455555
Q ss_pred ceEEEEcccccchhh
Q 001941 959 IAILVWKLNLKISWK 973 (993)
Q Consensus 959 ~~~~~~~~~~~~~~~ 973 (993)
-.+|+. .|+=|.
T Consensus 183 GGviv~---DNvl~~ 194 (247)
T PLN02589 183 GGVIGY---DNTLWN 194 (247)
T ss_pred CeEEEE---cCCCCC
Confidence 555554 555553
No 309
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=26.74 E-value=2.7e+02 Score=32.56 Aligned_cols=86 Identities=15% Similarity=0.068 Sum_probs=57.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEE--EEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHH-HhccCCceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAV--VCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPC-FESFLLIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v--~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~-Ir~~~~~~~~~ 963 (993)
.+|..+|=|+...+.++.-++..|..- ....|..+.+.. ...||+|++|. |+. +.+++.. |+....-.++.
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~---~~~fD~V~lDP--~Gs-~~~~l~~al~~~~~~gily 155 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE---ERKFDVVDIDP--FGS-PAPFLDSAIRSVKRGGLLC 155 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh---cCCCCEEEECC--CCC-cHHHHHHHHHHhcCCCEEE
Confidence 379999999999999998887766542 233333333221 24699999997 544 4566665 88888888887
Q ss_pred Ecccccchhhhhccc
Q 001941 964 WKLNLKISWKRSYKL 978 (993)
Q Consensus 964 ~~~~~~~~~~~~~~~ 978 (993)
.+-+.--.||-+|++
T Consensus 156 vSAtD~~~L~g~y~~ 170 (382)
T PRK04338 156 VTATDTAPLCGAYPK 170 (382)
T ss_pred EEecCchhhcCCChH
Confidence 765665566655543
No 310
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=26.38 E-value=7.2e+02 Score=25.47 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001941 412 RIAKVEEDYHGMMELKKKA 430 (993)
Q Consensus 412 r~~~l~~~~~~~~el~~~a 430 (993)
|...+........+.++++
T Consensus 50 R~~~I~~~l~~Ae~~~~eA 68 (175)
T PRK14472 50 REKGIQSSIDRAHSAKDEA 68 (175)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333
No 311
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=26.30 E-value=5.7e+02 Score=26.58 Aligned_cols=78 Identities=13% Similarity=0.131 Sum_probs=50.5
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCE--E-EEEcCHHHHHHHhCC-CCCCcEEEEcCCCCCCCHHHHHHHHhc---cCCc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAA--V-VCVERGKKATELLMP-PHQFDACFMDIQMPEMDGYEMLPCFES---FLLI 959 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~--v-~~a~~g~eAl~~~~~-~~~~DlIlmDi~MP~mdG~e~~~~Ir~---~~~~ 959 (993)
.++..||.++...+.+..-++..|+. + ....|..+++..... ...+|+|++|.=.....--++++.+-+ ....
T Consensus 73 ~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~ 152 (189)
T TIGR00095 73 KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDT 152 (189)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCC
Confidence 37999999999999998888877753 2 244455555554322 224899999987765444556666644 2334
Q ss_pred eEEEE
Q 001941 960 AILVW 964 (993)
Q Consensus 960 ~~~~~ 964 (993)
.+++.
T Consensus 153 ~iiv~ 157 (189)
T TIGR00095 153 VLIVV 157 (189)
T ss_pred eEEEE
Confidence 45554
No 312
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=26.28 E-value=4.7e+02 Score=31.97 Aligned_cols=75 Identities=19% Similarity=0.129 Sum_probs=45.1
Q ss_pred hccCCCeEEEEeCChHHHHHHHHHHH-hCCCEEEEEcC--HHH--HHH-HhCCCCCCcEEEEcCCCCCCCHHHHHHHHhc
Q 001941 882 HLLLGRKILIVDDNNVNLKVAAAGLK-RYGAAVVCVER--GKK--ATE-LLMPPHQFDACFMDIQMPEMDGYEMLPCFES 955 (993)
Q Consensus 882 ~~l~~~~ILIVdDn~~n~~vl~~~L~-~~g~~v~~a~~--g~e--Al~-~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~ 955 (993)
..+.|+++.|+-|..... -+..+|. +.|.++..+.. ... -++ .+. ....++++.| |..|+-+.|++
T Consensus 289 ~~l~Gkrv~I~gd~~~a~-~l~~~L~~ElGm~vv~~gt~~~~~~~~~~~~~~-~~~~~~~i~~------D~~el~~~i~~ 360 (519)
T PRK02910 289 TYLTGKRVFVFGDATHAV-AAARILSDELGFEVVGAGTYLREDARWVRAAAK-EYGDEALITD------DYLEVEDAIAE 360 (519)
T ss_pred HhhcCCEEEEEcCcHHHH-HHHHHHHHhcCCeEEEEecCCcchhHHHHHHHH-hcCCCeEEec------CHHHHHHHHHh
Confidence 356789999998865444 4566666 78999886643 111 111 121 1223455533 56788888888
Q ss_pred cCCceEEEE
Q 001941 956 FLLIAILVW 964 (993)
Q Consensus 956 ~~~~~~~~~ 964 (993)
..+.-++.-
T Consensus 361 ~~PdliiG~ 369 (519)
T PRK02910 361 AAPELVLGT 369 (519)
T ss_pred cCCCEEEEc
Confidence 776666653
No 313
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=26.22 E-value=3.6e+02 Score=25.13 Aligned_cols=42 Identities=7% Similarity=0.070 Sum_probs=24.0
Q ss_pred HHHHHHhCCCCCCcEEEEcC--CCCCCCHHHHHHHHhccCCceEEE
Q 001941 920 KKATELLMPPHQFDACFMDI--QMPEMDGYEMLPCFESFLLIAILV 963 (993)
Q Consensus 920 ~eAl~~~~~~~~~DlIlmDi--~MP~mdG~e~~~~Ir~~~~~~~~~ 963 (993)
.+..+++. .+.+|+|+--. ..+..||+ .+|+.--..++|++-
T Consensus 57 ~~i~~~i~-~~~id~vIn~~~~~~~~~~~~-~iRR~Av~~~ipl~T 100 (110)
T cd01424 57 PNIVDLIK-NGEIQLVINTPSGKRAIRDGF-SIRRAALEYKVPYFT 100 (110)
T ss_pred hhHHHHHH-cCCeEEEEECCCCCccCccHH-HHHHHHHHhCCCEEe
Confidence 34445553 46788887632 22233566 455556667777764
No 314
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=25.84 E-value=7e+02 Score=25.18 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001941 387 LAISTSIGILVIASLVGHIFQATVN 411 (993)
Q Consensus 387 ~~~~~~i~~lvi~~l~~~i~~~~~~ 411 (993)
..+..++.++++.+++.++++..+.
T Consensus 10 ~~~~~~inflil~~lL~~fl~kpi~ 34 (164)
T PRK14473 10 LLIAQLINFLLLIFLLRTFLYRPVL 34 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555666666555443
No 315
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=25.82 E-value=1.3e+02 Score=29.13 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=46.8
Q ss_pred ccCCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCH
Q 001941 883 LLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946 (993)
Q Consensus 883 ~l~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG 946 (993)
.+.||+++.||-|..-.......|...+.+|+.-. ++..+ +.+.||++++.+-.+--.-
T Consensus 8 ~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~----t~~~l-p~~hYD~~Ll~vavtfr~n 66 (140)
T COG4999 8 CLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRP----TFSAL-PPAHYDMMLLGVAVTFREN 66 (140)
T ss_pred hhccceeEEecCccHHHHHHHHHHhcCCceEEecc----ccccc-ChhhhceeeecccccccCC
Confidence 46789999999999999999999999999998754 34444 4578999999887655443
No 316
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=25.81 E-value=1.5e+02 Score=28.00 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=39.4
Q ss_pred HHHHHhCCCEEEEEcCH-----HHHHHHhCCC-CCCcEEEE--cCCC---CCCCHHHHHHHHhccCCceEEEE
Q 001941 903 AAGLKRYGAAVVCVERG-----KKATELLMPP-HQFDACFM--DIQM---PEMDGYEMLPCFESFLLIAILVW 964 (993)
Q Consensus 903 ~~~L~~~g~~v~~a~~g-----~eAl~~~~~~-~~~DlIlm--Di~M---P~mdG~e~~~~Ir~~~~~~~~~~ 964 (993)
..+|++.|..+..+..+ .++.+++. . ..+|+||- |-.. ..-||+. +++..-...||++..
T Consensus 35 a~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~-~~g~idlVIn~~~~~~~~~~~~dg~~-iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 35 SRVLADAGIPVRAVSKRHEDGEPTVDAAIA-EKGKFDVVINLRDPRRDRCTDEDGTA-LLRLARLYKIPVTTP 105 (112)
T ss_pred HHHHHHcCCceEEEEecCCCCCcHHHHHHh-CCCCEEEEEEcCCCCcccccCCChHH-HHHHHHHcCCCEEEC
Confidence 45566678877766543 44777775 5 68999887 4333 4567885 555556668888654
No 317
>PRK10742 putative methyltransferase; Provisional
Probab=25.60 E-value=2.5e+02 Score=30.94 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=43.4
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHhC------CC----EEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCC
Q 001941 885 LGRKILIVDDNNVNLKVAAAGLKRY------GA----AVV-CVERGKKATELLMPPHQFDACFMDIQMPEMD 945 (993)
Q Consensus 885 ~~~~ILIVdDn~~n~~vl~~~L~~~------g~----~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~md 945 (993)
.|.+|..||-++....++..-|+.. +. ++. ...|..+.+... ...||+|++|-+-|.-.
T Consensus 109 ~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~--~~~fDVVYlDPMfp~~~ 178 (250)
T PRK10742 109 VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI--TPRPQVVYLDPMFPHKQ 178 (250)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC--CCCCcEEEECCCCCCCc
Confidence 3667999999999999999999974 21 122 234555555554 23699999999999864
No 318
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=24.73 E-value=2.5e+02 Score=28.75 Aligned_cols=76 Identities=17% Similarity=0.276 Sum_probs=54.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhC--CCEEEEEcCH-------HHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRY--GAAVVCVERG-------KKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF 956 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~--g~~v~~a~~g-------~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~ 956 (993)
+.+|.++-..+...+.+...|++. |..+....+| .+.++.+. ...||+|+.-+-+|...- ++.+.++.
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~-~~~pdiv~vglG~PkQE~--~~~~~~~~ 122 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERIN-ASGADILFVGLGAPKQEL--WIARHKDR 122 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHH-HcCCCEEEEECCCCHHHH--HHHHHHHH
Confidence 568999999988888888788765 4444442232 22355554 467999999999998774 47888888
Q ss_pred CCceEEEE
Q 001941 957 LLIAILVW 964 (993)
Q Consensus 957 ~~~~~~~~ 964 (993)
...+++++
T Consensus 123 l~~~v~~~ 130 (171)
T cd06533 123 LPVPVAIG 130 (171)
T ss_pred CCCCEEEE
Confidence 88887554
No 319
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=24.69 E-value=6.2e+02 Score=24.15 Aligned_cols=38 Identities=29% Similarity=0.301 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHhhH
Q 001941 412 RIAKVEEDYHGMMELKKKAEAADVAKSQFLATVSHEIR 449 (993)
Q Consensus 412 r~~~l~~~~~~~~el~~~ae~a~~aKs~Fla~vSHELR 449 (993)
|..++........+.+.+++.....-..-+...-+|..
T Consensus 31 R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~ 68 (132)
T PF00430_consen 31 RKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQ 68 (132)
T ss_dssp -S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555554444444444433333333333333433
No 320
>COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=24.50 E-value=3.8e+02 Score=29.73 Aligned_cols=52 Identities=13% Similarity=0.154 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHhH-HHHHHHHHh
Q 001941 98 LVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNH-VQAMSILIS 149 (993)
Q Consensus 98 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~-~~~l~~l~~ 149 (993)
.++++...+.+......-+|.+.+...+++..++.|++.++|- ++.+.++.+
T Consensus 26 ~i~vv~sv~~~~~~~~~~qe~lrq~v~~~l~~ir~qLE~qlNg~I~~vkgl~~ 78 (297)
T COG3452 26 VILVVVSVHAWLQLRRVSQERLRQLVKQQLNIIRTQLETQLNGNIQLVKGLGK 78 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 3333334444444445566999999999999999999999886 999999965
No 321
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=24.01 E-value=70 Score=39.48 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCChhhHhhccCCccc
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTPFMQ 662 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q 662 (993)
.|+|+|+|.||++...+-+-.++++
T Consensus 51 ~IEV~DNG~GI~~~n~~~l~lkh~T 75 (672)
T KOG1978|consen 51 SIEVSDNGSGISATDFEGLALKHTT 75 (672)
T ss_pred eEEEecCCCCCCccchhhhhhhhhh
Confidence 3899999999999887776555543
No 322
>PLN02823 spermine synthase
Probab=23.83 E-value=2.9e+02 Score=31.72 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=51.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHhC-----CCEE-EEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCC-------HHHHHH-H
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRY-----GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMD-------GYEMLP-C 952 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~-----g~~v-~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~md-------G~e~~~-~ 952 (993)
.+|-+||=|+...++++..+... +-++ ....||.+-++.. ...||+||+|+.-|... .-|+.+ .
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~ 205 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--DEKFDVIIGDLADPVEGGPCYQLYTKSFYERI 205 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC--CCCccEEEecCCCccccCcchhhccHHHHHHH
Confidence 47999999999999999888532 1223 2456777777553 35799999998655322 235555 3
Q ss_pred -HhccCCceEEEE
Q 001941 953 -FESFLLIAILVW 964 (993)
Q Consensus 953 -Ir~~~~~~~~~~ 964 (993)
.|.+..-.+++.
T Consensus 206 ~~~~L~p~Gvlv~ 218 (336)
T PLN02823 206 VKPKLNPGGIFVT 218 (336)
T ss_pred HHHhcCCCcEEEE
Confidence 356777777664
No 323
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=23.64 E-value=7.3e+02 Score=24.59 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 001941 389 ISTSIGILVIASLVGHIFQATVN-----RIAKVEEDYHGMMELKKKA 430 (993)
Q Consensus 389 ~~~~i~~lvi~~l~~~i~~~~~~-----r~~~l~~~~~~~~el~~~a 430 (993)
+..++.++++.+++.++++..+. |-..+.+......+.++++
T Consensus 11 ~~qli~Flil~~~l~kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea 57 (141)
T PRK08476 11 LATFVVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDV 57 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555554443 3334444444433433333
No 324
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=23.60 E-value=4.9e+02 Score=23.96 Aligned_cols=84 Identities=14% Similarity=0.075 Sum_probs=50.3
Q ss_pred CCeEEEEeCChH----HHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceE
Q 001941 886 GRKILIVDDNNV----NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAI 961 (993)
Q Consensus 886 ~~~ILIVdDn~~----n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~ 961 (993)
.++||++-..-. ...-++..+++.|+++.....+...++... ..+|+|++-.|.- .-++-++.+=.-+++||
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~--~~~Dvill~pqi~--~~~~~i~~~~~~~~ipv 78 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKL--DDADVVLLAPQVA--YMLPDLKKETDKKGIPV 78 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhc--CCCCEEEECchHH--HHHHHHHHHhhhcCCCE
Confidence 357888777653 334566777788988765555554444332 3589999865542 23444555545667888
Q ss_pred E-EEcccccchhhhhccccCC
Q 001941 962 L-VWKLNLKISWKRSYKLLNR 981 (993)
Q Consensus 962 ~-~~~~~~~~~~~~~~~~~~~ 981 (993)
. +- .+.|..++.
T Consensus 79 ~~I~--------~~~Y~~mdg 91 (95)
T TIGR00853 79 EVIN--------GAQYGKLTG 91 (95)
T ss_pred EEeC--------hhhcccCCc
Confidence 3 33 455555554
No 325
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.58 E-value=5.4e+02 Score=25.33 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-----HHHhhhhHHHHHHHHHHHHHhHhHHHHHH
Q 001941 93 LLFWTLVSLWIFWYMSSQATEKRR-----EALGSMCDERARMLQDQFNVSMNHVQAMS 145 (993)
Q Consensus 93 ~l~~~~~s~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~l~~~~~~~~~~~~~l~ 145 (993)
+++|+++.+.|..........+.+ +.....-|+.-+-|-+.|+.+-..+..|+
T Consensus 15 LvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~ 72 (138)
T COG3105 15 LVVGIIIGALIARLTNRKLKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLA 72 (138)
T ss_pred HHHHHHHHHHHHHHcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777776665555444221 33344455555555566665555555554
No 326
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=23.54 E-value=9e+02 Score=25.66 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001941 411 NRIAKVEEDYHGMMELKKKAEAA 433 (993)
Q Consensus 411 ~r~~~l~~~~~~~~el~~~ae~a 433 (993)
.|..++..++.+..+.+.+++..
T Consensus 84 ~R~~~I~~~L~~Ae~~k~eAe~~ 106 (204)
T PRK09174 84 TRRDRIAQDLDQAARLKQEADAA 106 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544544444443
No 327
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.09 E-value=1.1e+03 Score=26.51 Aligned_cols=173 Identities=16% Similarity=0.103 Sum_probs=94.2
Q ss_pred CceEEEeCCchhh---HHHHHHHHHHcCCEEEEec-----CHHHHHHHHhc--CCCcccEEEEeccccccCccchHHHHH
Q 001941 738 GMKALVVDPRPIR---AKVSRYHIQRLGIQVEVVS-----DQLQCLSQIAS--GSKIINMILVEQEVWEKDTSVSTLFVN 807 (993)
Q Consensus 738 g~rvLvvdd~~~~---~~v~~~~L~~lG~~v~~~~-----~~~~al~~l~~--~~~~~~~ilid~~~~~~~~~~~~~~~~ 807 (993)
++-++.|.|+|.. ...-.+.++++|+.++... +.++.++.+.. ....++-+++....+..- .....++
T Consensus 40 ~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i--~~~~i~~ 117 (287)
T PRK14176 40 GLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHL--DPQEAME 117 (287)
T ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCC--CHHHHHh
Confidence 4567777777643 4556678999999998763 23444444433 345677788777664221 1111111
Q ss_pred HHHhcCCCCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCC
Q 001941 808 NLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887 (993)
Q Consensus 808 ~~~~~~~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 887 (993)
.+.-.... . ...+...-.... + ..-..|..+..+...|... .-.+.|+
T Consensus 118 ~I~p~KDV--D-------Gl~~~N~g~l~~--g--~~~~~PcTp~av~~ll~~~-------------------~i~l~Gk 165 (287)
T PRK14176 118 AIDPAKDA--D-------GFHPYNMGKLMI--G--DEGLVPCTPHGVIRALEEY-------------------GVDIEGK 165 (287)
T ss_pred ccCccccc--c-------ccChhhhhhHhc--C--CCCCCCCcHHHHHHHHHHc-------------------CCCCCCC
Confidence 11100000 0 000000000000 0 0012455555544444321 0135689
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCH
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG 946 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG 946 (993)
+++||-.....-+-+..+|...|+.|+.+++-..-+.... .+.|+|+.-+--|.+=.
T Consensus 166 ~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~--~~ADIvv~AvG~p~~i~ 222 (287)
T PRK14176 166 NAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYT--LDADILVVATGVKHLIK 222 (287)
T ss_pred EEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHH--hhCCEEEEccCCccccC
Confidence 9999999999999999999999999998876544344331 24688887777776543
No 328
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=22.90 E-value=2e+02 Score=28.67 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=36.5
Q ss_pred ccCCceEEEeCCchhhHHHHHHHHHHcCCEEEEec----CHHHHH
Q 001941 735 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVS----DQLQCL 775 (993)
Q Consensus 735 ~~~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~----~~~~al 775 (993)
++.|+++.|+.......+-+..+|.+.|+.|..+. +.+++.
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v 69 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKV 69 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHH
Confidence 57899999999999999999999999999999998 555554
No 329
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=22.79 E-value=6.7e+02 Score=28.81 Aligned_cols=80 Identities=11% Similarity=0.214 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 001941 414 AKVEEDYHGMME----LKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLI 489 (993)
Q Consensus 414 ~~l~~~~~~~~e----l~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lI 489 (993)
.+++++++++++ -++++++..+..++-.+.++|+.+. |..+...+.-+... .+.+..+.++.++...++....+
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkkr-Lk~L~~sLk~~~~~-~~~e~~~~i~~L~~~Ik~r~~~l 84 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKR-LKELKKSLKRCKKS-LSAEERELIEKLEEDIKERRCQL 84 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHHhhH
Confidence 344555555444 3456777777788889999999885 45555555554433 34456667777777766666666
Q ss_pred HHHHHH
Q 001941 490 NEVLDQ 495 (993)
Q Consensus 490 ndlLd~ 495 (993)
.|+=.+
T Consensus 85 ~DmEa~ 90 (330)
T PF07851_consen 85 FDMEAF 90 (330)
T ss_pred HHHHhh
Confidence 655433
No 330
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.59 E-value=4e+02 Score=22.45 Aligned_cols=13 Identities=8% Similarity=0.276 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHH
Q 001941 123 CDERARMLQDQFN 135 (993)
Q Consensus 123 ~~~~a~~l~~~~~ 135 (993)
...+.+.++++.+
T Consensus 53 ~~k~l~~le~e~~ 65 (68)
T PF06305_consen 53 LRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444554443
No 331
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.35 E-value=1.1e+03 Score=26.38 Aligned_cols=171 Identities=14% Similarity=0.155 Sum_probs=92.3
Q ss_pred CceEEEeCCchhh---HHHHHHHHHHcCCEEEEec-----CHHHHHHHHhc--CCCcccEEEEeccccccCccchHHHHH
Q 001941 738 GMKALVVDPRPIR---AKVSRYHIQRLGIQVEVVS-----DQLQCLSQIAS--GSKIINMILVEQEVWEKDTSVSTLFVN 807 (993)
Q Consensus 738 g~rvLvvdd~~~~---~~v~~~~L~~lG~~v~~~~-----~~~~al~~l~~--~~~~~~~ilid~~~~~~~~~~~~~~~~ 807 (993)
++-++.|.|++.. ...-.+.+++.|++++... +.++.++.+.. .....+-+++...++..- .....+.
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~--~~~~i~~ 112 (285)
T PRK10792 35 GLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHI--DNVKVLE 112 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCC--CHHHHHh
Confidence 4567778777754 3455678899999987762 34455555543 345677888877664321 1111111
Q ss_pred HHHhcCCCCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCC
Q 001941 808 NLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGR 887 (993)
Q Consensus 808 ~~~~~~~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 887 (993)
.+.-.... ....+...-.... + ....-|..+..+...|... .-.+.|+
T Consensus 113 ~I~p~KDV---------DGl~~~n~g~l~~--~--~~~~~PcTp~av~~ll~~~-------------------~i~l~Gk 160 (285)
T PRK10792 113 RIHPDKDV---------DGFHPYNVGRLAQ--R--IPLLRPCTPRGIMTLLERY-------------------GIDTYGL 160 (285)
T ss_pred ccCccccc---------CccChhhHhHHhC--C--CCCCCCCCHHHHHHHHHHc-------------------CCCCCCC
Confidence 11100000 0000000000000 0 0011355555444444321 0135689
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCC
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM 944 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~m 944 (993)
+++|+-.....-+-+..+|...|..|+.+++-..-++... ...|+|+.-+--|.+
T Consensus 161 ~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~--~~ADIvi~avG~p~~ 215 (285)
T PRK10792 161 NAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHV--RNADLLVVAVGKPGF 215 (285)
T ss_pred EEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHHH--hhCCEEEEcCCCccc
Confidence 9999999999999999999999999998877554444321 235777765555553
No 332
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=22.33 E-value=2.5e+02 Score=29.81 Aligned_cols=56 Identities=21% Similarity=0.494 Sum_probs=43.1
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCC--EEEE-ecCHHHHHHHHhcCC--CcccEEEEecc
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEV-VSDQLQCLSQIASGS--KIINMILVEQE 793 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~--~v~~-~~~~~~al~~l~~~~--~~~~~ilid~~ 793 (993)
+.++.-+|-++.+.++.+..+++.|. ++++ .++..+.+..+.+.. .+||++++|.+
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 34788889999999999999999987 3443 467777777765543 58999999975
No 333
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=22.02 E-value=3.2e+02 Score=27.86 Aligned_cols=127 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred cCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEE------------------------EEEEEEeCC
Q 001941 657 FTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST------------------------FTFTAVFGN 712 (993)
Q Consensus 657 FepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GSt------------------------F~~~lp~~~ 712 (993)
+-||+-.+. ...-.|+.--|++.+.+.+|-++.+...+..+.. |.|+-|+..
T Consensus 9 ~~P~~~~~~----~~~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~s~p~~~ 84 (225)
T PF00497_consen 9 YPPFSYIDE----DGEPSGIDVDLLRAIAKRLGIKIEFVPMPWSRLLEMLENGKADIIIGGLSITPERAKKFDFSDPYYS 84 (225)
T ss_dssp BTTTBEEET----TSEEESHHHHHHHHHHHHHTCEEEEEEEEGGGHHHHHHTTSSSEEESSEB-BHHHHTTEEEESESEE
T ss_pred CCCeEEECC----CCCEEEEhHHHHHHHHhhcccccceeecccccccccccccccccccccccccccccccccccccccc
Q ss_pred CCCCCCccccccccCCCCCCCcccCCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEe
Q 001941 713 GSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVE 791 (993)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid 791 (993)
......................++.|.++.++.+......+....-+ ++++..+.+..++++.+..+ .+|.++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~dl~~~~i~~~~g~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~g--~~d~~i~~ 159 (225)
T PF00497_consen 85 SPYVLVVRKGDAPPIKTIKSLDDLKGKRIGVVRGSSYADYLKQQYPS--NINIVEVDSPEEALEALLSG--RIDAFIVD 159 (225)
T ss_dssp EEEEEEEETTSTCSTSSHSSGGGGTTSEEEEETTSHHHHHHHHHTHH--TSEEEEESSHHHHHHHHHTT--SSSEEEEE
T ss_pred hhheeeeccccccccccccchhhhcCcccccccchhHHHHhhhhccc--hhhhcccccHHHHHHHHhcC--Ceeeeecc
No 334
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=21.87 E-value=2.8e+02 Score=35.35 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=48.5
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEc--CCCCCCCHHHHHHHHhcc--CCce
Q 001941 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMD--IQMPEMDGYEMLPCFESF--LLIA 960 (993)
Q Consensus 885 ~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmD--i~MP~mdG~e~~~~Ir~~--~~~~ 960 (993)
.+++|+|||-...+...+..+|++.|+++.++.+... .+... ...||.||+- .+-|.. .+..+.||.. ..+|
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~-~~~~~-~~~~DgLILsgGPGsp~d--~~~~~~I~~~~~~~iP 590 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHA-EAAFD-ERRPDLVVLSPGPGRPAD--FDVAGTIDAALARGLP 590 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCC-hhhhh-hcCCCEEEEcCCCCCchh--cccHHHHHHHHHCCCC
Confidence 4689999999888888999999999999988876532 22222 2458887761 111211 1223444432 4788
Q ss_pred EEEE
Q 001941 961 ILVW 964 (993)
Q Consensus 961 ~~~~ 964 (993)
++.-
T Consensus 591 vLGI 594 (717)
T TIGR01815 591 VFGV 594 (717)
T ss_pred EEEE
Confidence 8554
No 335
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=21.59 E-value=3e+02 Score=28.71 Aligned_cols=75 Identities=21% Similarity=0.282 Sum_probs=52.9
Q ss_pred EEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHH----------HHHHHHhcc--
Q 001941 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGY----------EMLPCFESF-- 956 (993)
Q Consensus 889 ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~----------e~~~~Ir~~-- 956 (993)
|+|||-..-|...+...|++.|+++....+..+ + ..+|.|++ |+.... .+.+.||+.
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~----l---~~~d~iii----pG~~~~~~~~~~~~~~~~~~~i~~~~~ 69 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEE----I---LSADKLIL----PGVGAFGDAMANLRERGLIEALKEAIA 69 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHH----h---ccCCEEEE----CCCCcHHHHHHHHHHcChHHHHHHHHH
Confidence 588999999999999999999999999987543 2 24899887 443211 135566654
Q ss_pred CCceEEEEcccccchhhhhccccCCc
Q 001941 957 LLIAILVWKLNLKISWKRSYKLLNRK 982 (993)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 982 (993)
...||+.- |.-+-+|...
T Consensus 70 ~~~pilGi--------C~G~q~l~~~ 87 (198)
T cd01748 70 SGKPFLGI--------CLGMQLLFES 87 (198)
T ss_pred CCCcEEEE--------CHHHHHhccc
Confidence 47888666 6666665554
No 336
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=21.52 E-value=8.8e+02 Score=24.78 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001941 412 RIAKVEEDYHGMMELKKKAEA 432 (993)
Q Consensus 412 r~~~l~~~~~~~~el~~~ae~ 432 (993)
|...+........+.++++++
T Consensus 48 R~~~I~~~l~~Ae~~~~eA~~ 68 (173)
T PRK13460 48 RASGVQNDINKASELRLEAEA 68 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455544444444444433
No 337
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=21.17 E-value=4.1e+02 Score=29.27 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=48.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCC-----CEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCC-----HHHHHHHHhc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYG-----AAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMD-----GYEMLPCFES 955 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g-----~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~md-----G~e~~~~Ir~ 955 (993)
.++.+||-|+...+.++..+...+ -++. ...++.+.++.. ...||+|++|..-|... .-++.+.+++
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~--~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~ 174 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT--ENTFDVIIVDSTDPVGPAETLFTKEFYELLKK 174 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC--CCCccEEEEeCCCCCCcccchhHHHHHHHHHH
Confidence 479999999998888888775431 1222 336777766654 35799999998655432 2355566544
Q ss_pred -cCCceEEEE
Q 001941 956 -FLLIAILVW 964 (993)
Q Consensus 956 -~~~~~~~~~ 964 (993)
+..-.+++.
T Consensus 175 ~L~pgG~lv~ 184 (270)
T TIGR00417 175 ALNEDGIFVA 184 (270)
T ss_pred HhCCCcEEEE
Confidence 455555544
No 338
>PRK11677 hypothetical protein; Provisional
Probab=21.14 E-value=5.7e+02 Score=25.41 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHhHHHHHHHHHhc
Q 001941 93 LLFWTLVSLWIFWYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILIST 150 (993)
Q Consensus 93 ~l~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~l~~l~~~ 150 (993)
+++|+++.+++..+..... +.+..+...-++-...|.++=+...+|+.--|.|+..
T Consensus 10 livG~iiG~~~~R~~~~~~--~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~ 65 (134)
T PRK11677 10 LVVGIIIGAVAMRFGNRKL--RQQQALQYELEKNKAELEEYRQELVSHFARSAELLDT 65 (134)
T ss_pred HHHHHHHHHHHHhhccchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554444333 3334445556666666666666677777666767654
No 339
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=20.80 E-value=7.8e+02 Score=25.65 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=47.9
Q ss_pred cCCceEEEeCCchhhHHHHHHHHHHcCCE--EEEecCHHHHHHHHhcCCCcccEEEEeccc
Q 001941 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQ--VEVVSDQLQCLSQIASGSKIINMILVEQEV 794 (993)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~L~~lG~~--v~~~~~~~~al~~l~~~~~~~~~ilid~~~ 794 (993)
+.-.++.++.+++..++..+..+++||-. |+.+.+.+++++.+..+...+.+...+...
T Consensus 29 fGa~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~ 89 (176)
T PRK03958 29 LGADKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENI 89 (176)
T ss_pred cCCceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCc
Confidence 44568899999999999999999999966 899999999999987555666666665544
No 340
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=20.75 E-value=2.4e+02 Score=33.77 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=56.0
Q ss_pred CeEEEEeCChHH-HHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCC-------CHHHHHHHHhccCC
Q 001941 887 RKILIVDDNNVN-LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM-------DGYEMLPCFESFLL 958 (993)
Q Consensus 887 ~~ILIVdDn~~n-~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~m-------dG~e~~~~Ir~~~~ 958 (993)
-+++|||-.+.. .+.+...|...|++|..+.= .|+..+. ...+-||+-..---- -|-.++...-+.+.
T Consensus 386 frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I--~a~syim--~evtkvfLGahailsNG~vysR~GTa~valvAna~n 461 (556)
T KOG1467|consen 386 FRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLI--NAASYIM--LEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFN 461 (556)
T ss_pred eEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEe--hhHHHHH--HhcceeeechhhhhcCcchhhhcchHHHHHHhcccC
Confidence 479999998854 23445556678998876642 2333332 235667776554332 35567788889999
Q ss_pred ceEEEEcccccchhhhhccccCC
Q 001941 959 IAILVWKLNLKISWKRSYKLLNR 981 (993)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~~ 981 (993)
||||+| |-+||.-.|
T Consensus 462 VPVlVC--------CE~yKF~eR 476 (556)
T KOG1467|consen 462 VPVLVC--------CEAYKFHER 476 (556)
T ss_pred CCEEEE--------echhhhhhh
Confidence 999999 999998765
No 341
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=20.67 E-value=2.2e+02 Score=31.09 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=54.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHhC-------CCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCH-----HHHHHHH-
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRY-------GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDG-----YEMLPCF- 953 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~-------g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG-----~e~~~~I- 953 (993)
.+|-+||=|+...++.+.++... ..+ ....||.+-++.... ..||+|++|..-|...+ .|+.+..
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~-i~~~Dg~~~l~~~~~-~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~ 178 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVR-IIIGDGRKFLKETQE-EKYDVIIVDLTDPDGPAPNLFTREFYQLCK 178 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEE-EEESTHHHHHHTSSS-T-EEEEEEESSSTTSCGGGGSSHHHHHHHH
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceE-EEEhhhHHHHHhccC-CcccEEEEeCCCCCCCcccccCHHHHHHHH
Confidence 47999999999999999988642 123 367888888887642 27999999999887655 3566666
Q ss_pred hccCCceEEEE
Q 001941 954 ESFLLIAILVW 964 (993)
Q Consensus 954 r~~~~~~~~~~ 964 (993)
|.+....+++.
T Consensus 179 ~~L~~~Gv~v~ 189 (246)
T PF01564_consen 179 RRLKPDGVLVL 189 (246)
T ss_dssp HHEEEEEEEEE
T ss_pred hhcCCCcEEEE
Confidence 35556777665
No 342
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=20.39 E-value=4.7e+02 Score=28.21 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=50.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCE--EE-EEcCHHHHHHHhCC---CCCCcEEEEcCCCCCCCHHHHHHH-HhccCCc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMP---PHQFDACFMDIQMPEMDGYEMLPC-FESFLLI 959 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~--v~-~a~~g~eAl~~~~~---~~~~DlIlmDi~MP~mdG~e~~~~-Ir~~~~~ 959 (993)
-++.-+|=|+....+++..+++.|+. +. ...+..+.+..+.. ...||+||+|..-|.. .+.... +|.+..-
T Consensus 94 g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~~y--~~~~~~~~~ll~~G 171 (234)
T PLN02781 94 GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADKPNY--VHFHEQLLKLVKVG 171 (234)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHHHH--HHHHHHHHHhcCCC
Confidence 37999999999999999999998863 22 44566666665421 2479999999763322 123333 4555555
Q ss_pred eEEEE
Q 001941 960 AILVW 964 (993)
Q Consensus 960 ~~~~~ 964 (993)
.+|+.
T Consensus 172 G~ii~ 176 (234)
T PLN02781 172 GIIAF 176 (234)
T ss_pred eEEEE
Confidence 66554
No 343
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.17 E-value=4.2e+02 Score=26.07 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001941 386 LLAISTSIGILVIASLVGHIFQATVNR 412 (993)
Q Consensus 386 ~~~~~~~i~~lvi~~l~~~i~~~~~~r 412 (993)
...|.+.+..+++..++|+++.+..++
T Consensus 5 ~~~W~~a~igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 5 FMTWEYALIGLVVGIIIGALIARLTNR 31 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 334444444555555566655444433
No 344
>PLN02366 spermidine synthase
Probab=20.17 E-value=4.5e+02 Score=29.83 Aligned_cols=77 Identities=12% Similarity=0.088 Sum_probs=49.5
Q ss_pred CeEEEEeCChHHHHHHHHHHHhC-----CCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCH-----HHHHHHH-h
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRY-----GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDG-----YEMLPCF-E 954 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~-----g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG-----~e~~~~I-r 954 (993)
.+|-+||=|+...++.+..+... +-++. ...|+.+.++... ...||+||+|..-|..-. -++.+.+ |
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~ 194 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-EGTYDAIIVDSSDPVGPAQELFEKPFFESVAR 194 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHH
Confidence 47999999998888888877542 12232 4456776666542 357999999987664322 2456665 4
Q ss_pred ccCCceEEEE
Q 001941 955 SFLLIAILVW 964 (993)
Q Consensus 955 ~~~~~~~~~~ 964 (993)
.+..-.+++-
T Consensus 195 ~L~pgGvlv~ 204 (308)
T PLN02366 195 ALRPGGVVCT 204 (308)
T ss_pred hcCCCcEEEE
Confidence 5556666653
No 345
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=20.11 E-value=8.9e+02 Score=24.30 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001941 412 RIAKVEEDYHGMMELKKKA 430 (993)
Q Consensus 412 r~~~l~~~~~~~~el~~~a 430 (993)
|..++........+.++++
T Consensus 54 R~~~I~~~l~~Ae~~~~ea 72 (156)
T CHL00118 54 RKEYIRKNLTKASEILAKA 72 (156)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333
No 346
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=20.03 E-value=4.9e+02 Score=31.23 Aligned_cols=78 Identities=18% Similarity=0.171 Sum_probs=48.1
Q ss_pred hccCCCeEEEEeCChHHHHHHHHHHH-hCCCEEEEEcCH---HHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC
Q 001941 882 HLLLGRKILIVDDNNVNLKVAAAGLK-RYGAAVVCVERG---KKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL 957 (993)
Q Consensus 882 ~~l~~~~ILIVdDn~~n~~vl~~~L~-~~g~~v~~a~~g---~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~ 957 (993)
..+.|+++.|.-|.... -.+...|. +.|.++..+... .+.++.+......+.++.| +.|-+|+-+.|++..
T Consensus 321 ~~L~GkrvaI~~~~~~~-~~l~~~l~~ElGmevv~~~~~~~~~~~~~~~~~~~~~~~~~i~----d~~~~e~~~~i~~~~ 395 (457)
T TIGR01284 321 ERLRGKKVWVWSGGPKL-WHWPRPLEDELGMEVVAVSTKFGHEDDYEKIIARVREGTVIID----DPNELELEEIIEKYK 395 (457)
T ss_pred HHcCCCEEEEECCCcHH-HHHHHHHHHhCCCEEEEEEEEeCCHHHHHHHHHhcCCCeEEEe----CCCHHHHHHHHHhcC
Confidence 45789999988666443 34555665 799998765332 3433333222223444443 457789989998887
Q ss_pred CceEEEE
Q 001941 958 LIAILVW 964 (993)
Q Consensus 958 ~~~~~~~ 964 (993)
..-++.-
T Consensus 396 pDllig~ 402 (457)
T TIGR01284 396 PDIILTG 402 (457)
T ss_pred CCEEEec
Confidence 7766653
Done!