Query 001941
Match_columns 993
No_of_seqs 681 out of 6106
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 05:34:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t4l_A Histidine kinase 4; PAS 100.0 5.8E-48 2E-52 421.1 27.0 268 107-382 1-270 (270)
2 2c2a_A Sensor histidine kinase 100.0 8.7E-38 3E-42 338.1 30.7 232 428-712 11-249 (258)
3 4ew8_A Sensor protein DIVL; si 100.0 4.8E-33 1.6E-37 301.8 30.8 230 424-713 27-258 (268)
4 1gkz_A [3-methyl-2-oxobutanoat 100.0 8.7E-33 3E-37 318.0 24.7 227 432-713 116-375 (388)
5 3jz3_A Sensor protein QSEC; he 100.0 8.1E-34 2.8E-38 298.3 12.9 215 437-712 2-218 (222)
6 2btz_A Pyruvate dehydrogenase 100.0 1.6E-32 5.5E-37 316.4 24.6 219 439-712 97-351 (394)
7 2e0a_A Pyruvate dehydrogenase 100.0 4.2E-32 1.4E-36 313.0 25.7 218 439-712 97-351 (394)
8 2q8g_A [pyruvate dehydrogenase 100.0 1E-31 3.5E-36 311.1 26.4 219 438-712 107-364 (407)
9 3d36_A Sporulation kinase B; G 100.0 7.1E-31 2.4E-35 279.9 26.0 214 435-713 12-227 (244)
10 1y8o_A [pyruvate dehydrogenase 100.0 4.6E-31 1.6E-35 306.7 24.3 220 437-712 118-375 (419)
11 3a0r_A Sensor protein; four he 100.0 1.6E-30 5.6E-35 292.1 23.7 214 435-712 130-346 (349)
12 4fpp_A Phosphotransferase; fou 100.0 1.2E-29 4.1E-34 273.9 22.1 195 440-709 49-246 (247)
13 1b3q_A Protein (chemotaxis pro 99.9 4.8E-27 1.6E-31 269.3 15.4 248 435-758 8-307 (379)
14 1id0_A PHOQ histidine kinase; 99.9 3.6E-23 1.2E-27 204.7 19.0 145 508-712 2-146 (152)
15 3ehh_A Sensor kinase (YOCF pro 99.9 4.3E-23 1.5E-27 216.6 19.5 189 435-711 26-216 (218)
16 1ysr_A Sensor-type histidine k 99.9 5.4E-23 1.8E-27 203.3 18.0 146 506-711 4-149 (150)
17 3sl2_A Sensor histidine kinase 99.9 9.7E-23 3.3E-27 207.6 18.3 153 509-714 2-155 (177)
18 3a0y_A Sensor protein; ATP-LID 99.9 4E-22 1.4E-26 196.7 20.0 146 506-712 2-149 (152)
19 1bxd_A ENVZ(290-450), protein 99.9 1.8E-22 6.2E-27 202.1 17.3 149 504-713 4-152 (161)
20 1r62_A Nitrogen regulation pro 99.9 3.7E-22 1.3E-26 198.4 17.6 156 504-711 2-159 (160)
21 1i58_A Chemotaxis protein CHEA 99.9 9.9E-22 3.4E-26 202.2 13.5 149 508-710 3-188 (189)
22 3ehg_A Sensor kinase (YOCF pro 99.8 1.3E-18 4.5E-23 167.7 12.9 125 510-711 2-126 (128)
23 3zxo_A Redox sensor histidine 99.8 2.9E-18 1E-22 164.8 14.7 125 508-711 3-128 (129)
24 3zxq_A Hypoxia sensor histidin 99.7 5.2E-17 1.8E-21 155.0 15.4 122 511-711 2-123 (124)
25 3luf_A Two-component system re 99.7 1.1E-16 3.6E-21 173.8 14.9 201 739-968 5-209 (259)
26 2ayx_A Sensor kinase protein R 99.7 2.1E-15 7.2E-20 162.9 18.9 203 734-968 7-211 (254)
27 2zbk_B Type 2 DNA topoisomeras 99.6 3.8E-16 1.3E-20 184.4 11.5 117 546-712 24-148 (530)
28 1mu5_A Type II DNA topoisomera 99.6 6.5E-16 2.2E-20 180.4 12.7 117 546-712 26-149 (471)
29 1th8_A Anti-sigma F factor; SP 99.6 1.1E-15 3.6E-20 150.4 11.9 103 548-713 35-141 (145)
30 3to5_A CHEY homolog; alpha(5)b 99.5 1.4E-14 4.9E-19 141.2 9.3 82 886-968 12-97 (134)
31 3mm4_A Histidine kinase homolo 99.5 7.1E-14 2.4E-18 145.9 11.0 165 685-863 16-195 (206)
32 2lpm_A Two-component response 99.5 9.6E-15 3.3E-19 140.2 2.4 79 886-966 8-87 (123)
33 1w25_A Stalked-cell differenti 99.4 2.8E-12 9.6E-17 149.9 20.3 216 739-964 2-230 (459)
34 2q2e_B Type 2 DNA topoisomeras 99.4 9.1E-13 3.1E-17 157.6 10.5 115 546-712 31-155 (621)
35 3n0r_A Response regulator; sig 99.3 3.1E-12 1.1E-16 140.7 8.0 81 886-967 160-242 (286)
36 3gl9_A Response regulator; bet 99.3 2.3E-11 7.8E-16 115.2 11.6 81 887-968 3-86 (122)
37 3f6p_A Transcriptional regulat 99.2 2.4E-11 8E-16 114.6 10.4 79 887-966 3-81 (120)
38 3t6k_A Response regulator rece 99.2 1.2E-10 4.2E-15 112.3 11.7 84 886-970 4-90 (136)
39 2r25_B Osmosensing histidine p 99.1 2.2E-10 7.5E-15 110.1 11.5 84 887-970 3-93 (133)
40 3rqi_A Response regulator prot 99.1 1.2E-10 4.2E-15 118.7 9.4 83 886-969 7-90 (184)
41 3mm4_A Histidine kinase homolo 99.1 1.3E-10 4.5E-15 121.0 9.7 84 884-967 59-160 (206)
42 3gt7_A Sensor protein; structu 99.1 5.7E-10 1.9E-14 110.0 13.1 83 886-969 7-92 (154)
43 3h5i_A Response regulator/sens 99.1 5.6E-10 1.9E-14 107.9 12.6 85 886-970 5-90 (140)
44 3h1g_A Chemotaxis protein CHEY 99.1 2.5E-10 8.4E-15 108.9 9.9 83 886-968 5-91 (129)
45 3m6m_D Sensory/regulatory prot 99.1 3.9E-10 1.3E-14 109.9 11.1 83 886-969 14-101 (143)
46 3i42_A Response regulator rece 99.0 4.1E-10 1.4E-14 106.6 9.3 79 887-966 4-85 (127)
47 3grc_A Sensor protein, kinase; 99.0 7.3E-10 2.5E-14 106.7 10.9 79 886-965 6-87 (140)
48 1mb3_A Cell division response 99.0 5.2E-10 1.8E-14 105.1 9.2 81 887-968 2-85 (124)
49 3hdv_A Response regulator; PSI 99.0 1.1E-09 3.9E-14 104.8 11.6 88 886-973 7-96 (136)
50 2a9o_A Response regulator; ess 99.0 6.1E-10 2.1E-14 103.8 9.1 81 887-968 2-82 (120)
51 1zgz_A Torcad operon transcrip 99.0 1E-09 3.4E-14 103.0 10.5 81 887-968 3-83 (122)
52 1xhf_A DYE resistance, aerobic 99.0 1E-09 3.5E-14 103.1 10.4 80 887-967 4-83 (123)
53 1dbw_A Transcriptional regulat 99.0 1.5E-09 5.2E-14 102.6 11.5 83 886-969 3-86 (126)
54 3eod_A Protein HNR; response r 99.0 1.7E-09 5.8E-14 102.7 11.9 85 885-970 6-91 (130)
55 1srr_A SPO0F, sporulation resp 99.0 1.3E-09 4.6E-14 102.6 11.0 84 887-971 4-88 (124)
56 3lua_A Response regulator rece 99.0 1.3E-09 4.4E-14 105.1 10.6 83 886-969 4-92 (140)
57 3c3m_A Response regulator rece 99.0 1.2E-09 4.2E-14 105.2 10.3 79 887-966 4-85 (138)
58 3heb_A Response regulator rece 99.0 1.6E-09 5.4E-14 106.1 11.3 84 886-969 4-100 (152)
59 3kyj_B CHEY6 protein, putative 99.0 5.5E-10 1.9E-14 108.5 7.5 81 885-966 12-95 (145)
60 3ilh_A Two component response 99.0 2E-09 6.7E-14 104.0 11.3 82 886-968 9-102 (146)
61 2qzj_A Two-component response 99.0 1.4E-09 4.8E-14 104.8 10.2 81 887-968 5-85 (136)
62 3hv2_A Response regulator/HD d 99.0 1.9E-09 6.6E-14 105.8 11.3 83 886-969 14-97 (153)
63 1i3c_A Response regulator RCP1 99.0 3.8E-09 1.3E-13 103.3 13.2 83 887-969 9-102 (149)
64 3crn_A Response regulator rece 99.0 2.6E-09 8.8E-14 102.1 11.5 82 887-969 4-86 (132)
65 1k68_A Phytochrome response re 99.0 3.9E-09 1.3E-13 100.8 12.8 83 886-968 2-95 (140)
66 3to5_A CHEY homolog; alpha(5)b 99.0 1.7E-09 5.7E-14 105.3 10.1 119 737-862 11-131 (134)
67 3a10_A Response regulator; pho 99.0 2.1E-09 7.2E-14 99.8 10.4 80 887-967 2-82 (116)
68 3kht_A Response regulator; PSI 99.0 3E-09 1E-13 103.0 11.8 83 886-969 5-92 (144)
69 3lte_A Response regulator; str 99.0 1.7E-09 5.9E-14 102.8 9.8 78 886-964 6-86 (132)
70 1jbe_A Chemotaxis protein CHEY 99.0 2.8E-09 9.6E-14 100.8 11.2 80 887-967 5-88 (128)
71 1yio_A Response regulatory pro 99.0 2.6E-09 8.9E-14 110.5 11.8 83 886-969 4-87 (208)
72 1p6q_A CHEY2; chemotaxis, sign 98.9 1.6E-09 5.5E-14 102.6 9.2 80 887-967 7-90 (129)
73 2pl1_A Transcriptional regulat 98.9 2.4E-09 8.2E-14 100.1 10.1 78 888-966 2-80 (121)
74 3snk_A Response regulator CHEY 98.9 6.7E-10 2.3E-14 106.6 6.2 84 886-970 14-99 (135)
75 3nhm_A Response regulator; pro 98.9 4.5E-09 1.5E-13 100.1 11.9 80 886-967 4-86 (133)
76 2jba_A Phosphate regulon trans 98.9 2.9E-09 1E-13 100.4 10.5 79 887-966 3-84 (127)
77 1s8n_A Putative antiterminator 98.9 3E-09 1E-13 110.0 11.4 82 887-969 14-96 (205)
78 3r0j_A Possible two component 98.9 1.7E-09 5.9E-14 115.7 9.8 82 886-968 23-105 (250)
79 1tmy_A CHEY protein, TMY; chem 98.9 2.9E-09 9.8E-14 99.5 10.0 81 887-968 3-85 (120)
80 3kto_A Response regulator rece 98.9 2.2E-09 7.5E-14 103.2 9.4 83 886-969 6-91 (136)
81 1mvo_A PHOP response regulator 98.9 2.4E-09 8.1E-14 102.4 9.5 80 887-967 4-84 (136)
82 3c97_A Signal transduction his 98.9 2.2E-09 7.4E-14 103.6 9.3 78 887-965 11-94 (140)
83 2b4a_A BH3024; flavodoxin-like 98.9 3.6E-09 1.2E-13 101.7 10.7 80 885-965 14-95 (138)
84 3cg4_A Response regulator rece 98.9 6.4E-09 2.2E-13 100.2 12.3 80 886-966 7-89 (142)
85 1zh2_A KDP operon transcriptio 98.9 2.5E-09 8.5E-14 99.8 9.0 81 888-969 3-83 (121)
86 3dzd_A Transcriptional regulat 98.9 8.7E-10 3E-14 125.5 6.8 82 887-969 1-83 (368)
87 1k66_A Phytochrome response re 98.9 4.9E-09 1.7E-13 101.4 11.2 84 886-969 6-103 (149)
88 3hzh_A Chemotaxis response reg 98.9 4.1E-09 1.4E-13 104.1 10.8 86 886-972 36-125 (157)
89 3jte_A Response regulator rece 98.9 8.1E-09 2.8E-13 99.7 12.5 83 887-969 4-88 (143)
90 2rjn_A Response regulator rece 98.9 6.2E-09 2.1E-13 102.1 11.8 83 885-968 6-89 (154)
91 3eq2_A Probable two-component 98.9 1.4E-09 4.9E-14 124.5 8.4 78 887-965 6-84 (394)
92 3cnb_A DNA-binding response re 98.9 6.7E-09 2.3E-13 99.9 11.7 86 886-972 8-98 (143)
93 3cfy_A Putative LUXO repressor 98.9 4E-09 1.4E-13 101.7 10.0 81 887-968 5-86 (137)
94 1dcf_A ETR1 protein; beta-alph 98.9 9.3E-09 3.2E-13 98.5 12.4 69 885-955 6-74 (136)
95 3q9s_A DNA-binding response re 98.9 2E-09 6.7E-14 115.5 8.5 83 886-969 37-119 (249)
96 4e7p_A Response regulator; DNA 98.9 1.1E-08 3.6E-13 100.1 12.8 86 886-972 20-108 (150)
97 4dad_A Putative pilus assembly 98.9 2E-09 6.9E-14 104.5 7.4 87 885-971 19-108 (146)
98 3kcn_A Adenylate cyclase homol 98.9 7.1E-09 2.4E-13 101.4 11.4 83 886-969 4-87 (151)
99 1dz3_A Stage 0 sporulation pro 98.9 5.6E-09 1.9E-13 99.2 10.3 83 887-970 3-89 (130)
100 3f6c_A Positive transcription 98.9 4.8E-09 1.7E-13 100.0 9.5 83 887-970 2-86 (134)
101 2qvg_A Two component response 98.9 1.1E-08 3.7E-13 98.7 12.0 84 886-969 7-100 (143)
102 3hdg_A Uncharacterized protein 98.9 5E-09 1.7E-13 100.4 9.3 83 886-969 7-90 (137)
103 2zay_A Response regulator rece 98.9 4.5E-09 1.5E-13 102.0 9.0 83 886-969 8-93 (147)
104 2rdm_A Response regulator rece 98.9 9.8E-09 3.3E-13 97.4 11.0 85 886-971 5-92 (132)
105 3n53_A Response regulator rece 98.9 6.5E-09 2.2E-13 100.1 9.8 80 886-967 3-85 (140)
106 2j48_A Two-component sensor ki 98.9 5.9E-09 2E-13 96.1 9.1 79 887-966 2-83 (119)
107 3b2n_A Uncharacterized protein 98.9 7.4E-09 2.5E-13 99.1 10.0 82 887-969 4-88 (133)
108 1qkk_A DCTD, C4-dicarboxylate 98.8 1.6E-08 5.5E-13 99.2 12.4 83 886-969 3-86 (155)
109 2gkg_A Response regulator homo 98.8 9.5E-09 3.3E-13 96.4 9.9 77 887-964 6-86 (127)
110 2qxy_A Response regulator; reg 98.8 1.4E-08 4.7E-13 98.0 11.1 82 886-969 4-86 (142)
111 3sy8_A ROCR; TIM barrel phosph 98.8 3.5E-09 1.2E-13 121.8 8.1 78 887-964 4-82 (400)
112 1w25_A Stalked-cell differenti 98.8 4.8E-09 1.6E-13 122.5 9.4 80 887-967 2-84 (459)
113 1kgs_A DRRD, DNA binding respo 98.8 1.6E-08 5.5E-13 105.7 12.2 80 887-967 3-83 (225)
114 3cg0_A Response regulator rece 98.8 1.2E-08 4.2E-13 97.8 10.4 83 886-969 9-93 (140)
115 2jk1_A HUPR, hydrogenase trans 98.8 7.4E-09 2.5E-13 99.7 8.8 80 887-968 2-82 (139)
116 2gwr_A DNA-binding response re 98.8 7.1E-09 2.4E-13 109.9 9.4 80 887-967 6-85 (238)
117 3cu5_A Two component transcrip 98.8 2E-08 6.8E-13 97.3 11.7 81 887-968 3-87 (141)
118 2oqr_A Sensory transduction pr 98.8 8.1E-09 2.8E-13 108.5 9.2 79 887-966 5-83 (230)
119 1ys7_A Transcriptional regulat 98.8 1.9E-08 6.6E-13 105.7 12.1 80 887-967 8-88 (233)
120 3eul_A Possible nitrate/nitrit 98.8 1.8E-08 6E-13 98.6 10.4 85 885-970 14-101 (152)
121 1a04_A Nitrate/nitrite respons 98.8 1.6E-08 5.4E-13 105.2 10.5 83 887-970 6-91 (215)
122 3eqz_A Response regulator; str 98.8 1.4E-08 4.7E-13 96.6 8.6 78 886-965 3-81 (135)
123 2qr3_A Two-component system re 98.8 2.6E-08 8.9E-13 95.4 10.5 80 887-967 4-89 (140)
124 3t8y_A CHEB, chemotaxis respon 98.8 1.3E-08 4.4E-13 101.5 8.6 80 887-967 26-107 (164)
125 3cz5_A Two-component response 98.7 3.7E-08 1.3E-12 96.4 11.4 83 886-969 5-90 (153)
126 3luf_A Two-component system re 98.7 5.2E-09 1.8E-13 113.1 5.6 77 887-966 5-82 (259)
127 1ny5_A Transcriptional regulat 98.7 1.6E-08 5.4E-13 115.9 9.2 81 888-969 2-83 (387)
128 3klo_A Transcriptional regulat 98.7 1.5E-08 5E-13 106.5 7.4 85 887-971 8-96 (225)
129 2qv0_A Protein MRKE; structura 98.7 3.6E-08 1.2E-12 95.1 9.5 78 886-964 9-89 (143)
130 3bre_A Probable two-component 98.7 9.6E-09 3.3E-13 115.6 6.1 83 887-970 19-105 (358)
131 3c3w_A Two component transcrip 98.7 2.1E-08 7.3E-13 105.4 7.0 80 888-968 3-85 (225)
132 1a2o_A CHEB methylesterase; ba 98.7 3.4E-08 1.2E-12 111.5 9.0 78 887-965 4-83 (349)
133 2pln_A HP1043, response regula 98.6 1.1E-07 3.8E-12 91.0 11.0 80 884-968 16-96 (137)
134 1p2f_A Response regulator; DRR 98.6 5.4E-08 1.9E-12 101.5 9.2 79 887-969 3-82 (220)
135 2vyc_A Biodegradative arginine 98.6 4.3E-08 1.5E-12 121.5 9.5 79 888-966 2-93 (755)
136 2qsj_A DNA-binding response re 98.6 6.6E-08 2.3E-12 94.6 8.5 80 887-966 4-86 (154)
137 1dc7_A NTRC, nitrogen regulati 98.6 9.1E-09 3.1E-13 96.2 2.0 78 887-965 4-82 (124)
138 1qo0_D AMIR; binding protein, 98.6 3.1E-08 1.1E-12 101.5 6.2 80 884-969 10-90 (196)
139 2lpm_A Two-component response 98.6 4.6E-08 1.6E-12 93.6 6.7 113 737-862 7-120 (123)
140 3hzh_A Chemotaxis response reg 98.5 3.5E-07 1.2E-11 90.1 10.4 120 737-862 35-155 (157)
141 2hqr_A Putative transcriptiona 98.5 2.7E-07 9.4E-12 96.3 9.6 75 888-967 2-77 (223)
142 3gl9_A Response regulator; bet 98.5 8.4E-07 2.9E-11 83.4 11.3 117 739-862 3-120 (122)
143 3r0j_A Possible two component 98.4 7.5E-07 2.6E-11 95.0 11.6 140 701-863 1-140 (250)
144 3n0r_A Response regulator; sig 98.4 1.9E-06 6.4E-11 94.5 14.5 116 738-864 160-277 (286)
145 1dcf_A ETR1 protein; beta-alph 98.4 2.4E-06 8.1E-11 81.5 12.4 121 736-863 5-128 (136)
146 3m6m_D Sensory/regulatory prot 98.4 1.6E-06 5.4E-11 84.0 10.9 122 736-863 12-135 (143)
147 1kij_A DNA gyrase subunit B; t 98.3 2.7E-07 9.1E-12 105.4 4.7 86 547-689 31-128 (390)
148 3h1g_A Chemotaxis protein CHEY 98.3 2E-06 6.9E-11 81.4 10.1 122 737-863 4-126 (129)
149 2r25_B Osmosensing histidine p 98.3 3.3E-06 1.1E-10 80.6 11.3 120 739-863 3-126 (133)
150 3i42_A Response regulator rece 98.3 3.5E-06 1.2E-10 79.2 11.2 119 738-863 3-121 (127)
151 3t6k_A Response regulator rece 98.3 2.5E-06 8.6E-11 81.7 10.4 120 738-864 4-124 (136)
152 3grc_A Sensor protein, kinase; 98.3 3.2E-06 1.1E-10 80.9 10.9 122 738-864 6-127 (140)
153 1b63_A MUTL; DNA mismatch repa 98.3 1.8E-06 6.1E-11 96.7 10.1 89 552-700 24-118 (333)
154 3h5i_A Response regulator/sens 98.2 1.1E-05 3.8E-10 77.3 13.9 120 737-863 4-123 (140)
155 3lua_A Response regulator rece 98.2 2.3E-06 7.8E-11 82.0 8.8 123 738-865 4-128 (140)
156 3gt7_A Sensor protein; structu 98.2 5.3E-06 1.8E-10 81.2 11.5 121 738-864 7-127 (154)
157 1h7s_A PMS1 protein homolog 2; 98.2 2.8E-06 9.5E-11 96.1 10.4 89 552-700 34-128 (365)
158 3cg4_A Response regulator rece 98.2 1.5E-05 5E-10 76.3 14.0 122 737-864 6-127 (142)
159 3f6p_A Transcriptional regulat 98.2 5.2E-06 1.8E-10 77.6 10.5 115 739-862 3-117 (120)
160 3na3_A DNA mismatch repair pro 98.2 3.9E-06 1.3E-10 93.9 11.2 89 552-700 28-122 (348)
161 3lte_A Response regulator; str 98.2 8.3E-06 2.9E-10 77.0 12.1 120 738-864 6-125 (132)
162 1k68_A Phytochrome response re 98.2 6.2E-06 2.1E-10 78.2 11.1 122 738-863 2-130 (140)
163 3heb_A Response regulator rece 98.2 7.5E-06 2.6E-10 79.6 11.8 123 738-864 4-135 (152)
164 3eod_A Protein HNR; response r 98.2 6E-06 2E-10 77.9 10.7 120 736-863 5-125 (130)
165 3ilh_A Two component response 98.2 4.2E-06 1.4E-10 80.3 9.8 124 737-864 8-139 (146)
166 3nhm_A Response regulator; pro 98.2 1.7E-05 5.7E-10 75.0 13.8 119 738-864 4-122 (133)
167 3hdv_A Response regulator; PSI 98.2 9.3E-06 3.2E-10 77.2 10.9 122 738-865 7-128 (136)
168 2gkg_A Response regulator homo 98.1 2.1E-05 7E-10 73.2 12.8 117 739-863 6-124 (127)
169 1jbe_A Chemotaxis protein CHEY 98.1 1.2E-05 4.2E-10 75.4 11.0 119 738-862 4-123 (128)
170 1mb3_A Cell division response 98.1 1.7E-05 5.7E-10 73.9 11.7 119 739-863 2-120 (124)
171 3c3m_A Response regulator rece 98.1 3E-05 1E-09 74.2 13.4 119 739-864 4-123 (138)
172 2ayx_A Sensor kinase protein R 98.1 1.2E-05 4.1E-10 86.2 11.8 121 735-863 126-246 (254)
173 3jte_A Response regulator rece 98.1 1.3E-05 4.4E-10 76.9 10.9 119 739-863 4-122 (143)
174 1k66_A Phytochrome response re 98.1 1.3E-05 4.5E-10 76.9 11.0 123 737-863 5-137 (149)
175 2qvg_A Two component response 98.1 1.8E-05 6.1E-10 75.8 11.8 124 738-865 7-136 (143)
176 3zcc_A HAMP, osmolarity sensor 98.1 9.9E-06 3.4E-10 74.4 9.5 67 425-496 48-114 (114)
177 3cnb_A DNA-binding response re 98.1 2.1E-05 7.2E-10 75.0 11.9 122 737-864 7-130 (143)
178 3c97_A Signal transduction his 98.1 3E-05 1E-09 74.2 12.8 116 738-863 10-129 (140)
179 3rqi_A Response regulator prot 98.1 6.3E-06 2.2E-10 83.5 8.2 119 737-863 6-124 (184)
180 3ke6_A Protein RV1364C/MT1410; 98.1 3.6E-06 1.2E-10 96.7 7.0 90 549-712 294-387 (399)
181 2zay_A Response regulator rece 98.1 1.3E-05 4.4E-10 77.3 9.9 122 737-864 7-128 (147)
182 3kht_A Response regulator; PSI 98.1 1.7E-05 5.9E-10 76.2 10.7 122 737-864 4-128 (144)
183 4dad_A Putative pilus assembly 98.1 9.7E-06 3.3E-10 78.2 8.9 125 734-864 16-141 (146)
184 2jba_A Phosphate regulon trans 98.0 2E-05 7E-10 73.6 10.6 119 739-863 3-121 (127)
185 2rjn_A Response regulator rece 98.0 2.8E-05 9.7E-10 75.7 12.0 121 736-863 5-125 (154)
186 1i3c_A Response regulator RCP1 98.0 2.9E-05 9.8E-10 75.4 12.0 122 738-863 8-136 (149)
187 1p6q_A CHEY2; chemotaxis, sign 98.0 1.2E-05 4.3E-10 75.4 8.9 120 738-863 6-126 (129)
188 3n53_A Response regulator rece 98.0 3.8E-05 1.3E-09 73.4 12.5 118 739-863 4-121 (140)
189 3kto_A Response regulator rece 98.0 5.9E-06 2E-10 78.9 6.7 122 738-865 6-127 (136)
190 2pl1_A Transcriptional regulat 98.0 3.5E-05 1.2E-09 71.3 11.5 116 739-862 1-116 (121)
191 3hv2_A Response regulator/HD d 98.0 2.3E-05 8E-10 76.3 10.8 119 737-863 13-132 (153)
192 3a10_A Response regulator; pho 98.0 4.9E-05 1.7E-09 69.9 12.4 114 739-862 2-115 (116)
193 3snk_A Response regulator CHEY 98.0 6.2E-06 2.1E-10 78.5 6.3 118 738-863 14-132 (135)
194 1dbw_A Transcriptional regulat 98.0 4.5E-05 1.5E-09 71.4 12.0 118 738-863 3-120 (126)
195 3hdg_A Uncharacterized protein 98.0 2E-05 6.9E-10 74.9 9.2 118 738-863 7-124 (137)
196 1tmy_A CHEY protein, TMY; chem 98.0 2.7E-05 9.2E-10 72.1 9.9 117 738-862 2-119 (120)
197 1srr_A SPO0F, sporulation resp 98.0 3E-05 1E-09 72.3 10.2 117 739-863 4-120 (124)
198 3f6c_A Positive transcription 98.0 2.8E-05 9.7E-10 73.5 10.1 118 739-864 2-120 (134)
199 2j48_A Two-component sensor ki 98.0 3.5E-05 1.2E-09 70.4 10.4 115 738-862 1-116 (119)
200 1xhf_A DYE resistance, aerobic 97.9 4.3E-05 1.5E-09 71.0 10.9 115 739-862 4-118 (123)
201 2qzj_A Two-component response 97.9 2.5E-05 8.7E-10 74.6 9.5 117 738-863 4-120 (136)
202 4e7p_A Response regulator; DNA 97.9 4.9E-05 1.7E-09 73.7 11.6 119 737-863 19-139 (150)
203 3cg0_A Response regulator rece 97.9 4.5E-05 1.5E-09 72.5 11.2 119 737-864 8-128 (140)
204 2b4a_A BH3024; flavodoxin-like 97.9 8.6E-05 2.9E-09 70.7 13.0 117 736-863 13-130 (138)
205 3crn_A Response regulator rece 97.9 4.1E-05 1.4E-09 72.6 10.6 117 739-863 4-120 (132)
206 2rdm_A Response regulator rece 97.9 9.2E-05 3.2E-09 69.6 12.9 120 737-865 4-124 (132)
207 2pln_A HP1043, response regula 97.9 5.9E-05 2E-09 71.7 11.7 117 735-863 15-132 (137)
208 1zgz_A Torcad operon transcrip 97.9 5.9E-05 2E-09 70.0 11.4 115 739-862 3-117 (122)
209 2qxy_A Response regulator; reg 97.9 4.8E-05 1.6E-09 72.7 10.9 118 738-864 4-121 (142)
210 1mvo_A PHOP response regulator 97.9 8.1E-05 2.8E-09 70.5 12.3 119 738-864 3-121 (136)
211 3h4l_A DNA mismatch repair pro 97.9 1.8E-05 6.3E-10 89.2 8.6 95 552-706 25-127 (367)
212 2qr3_A Two-component system re 97.9 4.8E-05 1.7E-09 72.3 10.2 121 738-864 3-126 (140)
213 1s8n_A Putative antiterminator 97.9 7.1E-05 2.4E-09 76.8 12.0 117 738-863 13-130 (205)
214 3kyj_B CHEY6 protein, putative 97.9 3.6E-05 1.2E-09 74.1 9.0 111 737-854 12-125 (145)
215 2a9o_A Response regulator; ess 97.9 5.9E-05 2E-09 69.5 10.1 116 739-863 2-117 (120)
216 1ixm_A SPO0B, protein (sporula 97.9 0.00013 4.4E-09 75.0 13.5 26 636-661 145-170 (192)
217 1ys7_A Transcriptional regulat 97.8 0.00019 6.4E-09 74.9 15.0 118 738-863 7-124 (233)
218 3dzd_A Transcriptional regulat 97.8 4E-05 1.4E-09 87.0 10.4 118 739-864 1-118 (368)
219 1dz3_A Stage 0 sporulation pro 97.8 6.5E-05 2.2E-09 70.7 10.1 118 739-863 3-122 (130)
220 3kcn_A Adenylate cyclase homol 97.8 5.4E-05 1.9E-09 73.5 9.4 118 738-863 4-122 (151)
221 3eul_A Possible nitrate/nitrit 97.8 0.00011 3.7E-09 71.3 11.5 121 736-864 13-135 (152)
222 1qkk_A DCTD, C4-dicarboxylate 97.8 6.4E-05 2.2E-09 73.2 9.8 118 738-863 3-120 (155)
223 1kgs_A DRRD, DNA binding respo 97.8 0.00015 5.1E-09 75.2 13.1 118 738-863 2-119 (225)
224 3cfy_A Putative LUXO repressor 97.8 7.1E-05 2.4E-09 71.6 9.4 116 740-863 6-121 (137)
225 3eqz_A Response regulator; str 97.8 4.8E-05 1.6E-09 71.7 8.0 120 738-865 3-126 (135)
226 1a2o_A CHEB methylesterase; ba 97.7 0.00026 8.7E-09 79.7 14.8 196 739-964 4-214 (349)
227 3cz5_A Two-component response 97.7 0.00011 3.9E-09 71.2 9.9 119 737-863 4-124 (153)
228 1yio_A Response regulatory pro 97.7 9.1E-05 3.1E-09 76.0 9.5 118 738-863 4-121 (208)
229 1zh2_A KDP operon transcriptio 97.7 0.00013 4.5E-09 67.3 9.6 115 739-862 2-116 (121)
230 3b2n_A Uncharacterized protein 97.7 0.00015 5.1E-09 68.7 10.1 117 739-863 4-122 (133)
231 3q9s_A DNA-binding response re 97.6 0.00015 5.2E-09 77.2 10.6 118 738-864 37-154 (249)
232 3cu5_A Two component transcrip 97.6 0.00024 8.2E-09 68.1 11.0 117 739-863 3-122 (141)
233 2qsj_A DNA-binding response re 97.6 0.00025 8.6E-09 68.7 11.2 120 738-864 3-124 (154)
234 2qv0_A Protein MRKE; structura 97.6 0.00035 1.2E-08 66.7 11.9 117 738-864 9-127 (143)
235 2gwr_A DNA-binding response re 97.6 0.00023 7.7E-09 75.0 11.1 117 739-864 6-122 (238)
236 3t8y_A CHEB, chemotaxis respon 97.6 0.00023 8E-09 70.3 10.5 119 738-864 25-155 (164)
237 1qo0_D AMIR; binding protein, 97.5 9.3E-05 3.2E-09 75.3 6.8 115 736-863 10-124 (196)
238 2oqr_A Sensory transduction pr 97.5 0.00025 8.7E-09 73.8 10.2 117 739-864 5-121 (230)
239 3eq2_A Probable two-component 97.5 0.00015 5.1E-09 82.7 9.0 117 738-862 5-122 (394)
240 1ny5_A Transcriptional regulat 97.5 0.00027 9.2E-09 80.7 10.9 117 739-863 1-117 (387)
241 2jk1_A HUPR, hydrogenase trans 97.5 0.00025 8.6E-09 67.6 9.1 117 739-863 2-118 (139)
242 1a04_A Nitrate/nitrite respons 97.5 0.00032 1.1E-08 72.4 10.2 119 738-864 5-125 (215)
243 1dc7_A NTRC, nitrogen regulati 97.5 0.00011 3.7E-09 68.1 5.6 117 739-863 4-120 (124)
244 2wer_A ATP-dependent molecular 97.4 0.00013 4.5E-09 76.7 6.4 58 638-699 74-141 (220)
245 3sy8_A ROCR; TIM barrel phosph 97.4 0.00034 1.1E-08 80.1 9.6 119 739-864 4-128 (400)
246 2hqr_A Putative transcriptiona 97.4 0.00044 1.5E-08 71.7 9.7 115 739-865 1-116 (223)
247 1p2f_A Response regulator; DRR 97.4 0.00032 1.1E-08 72.6 8.6 115 739-864 3-117 (220)
248 3zrx_A AF1503 protein, osmolar 97.4 0.00038 1.3E-08 63.5 7.9 59 434-497 57-115 (115)
249 3c3w_A Two component transcrip 97.1 0.00035 1.2E-08 73.0 5.7 117 739-863 2-120 (225)
250 3bre_A Probable two-component 97.1 0.00053 1.8E-08 76.6 7.4 116 739-861 19-136 (358)
251 1yc1_A HSP 86, heat shock prot 97.0 0.00095 3.3E-08 71.9 7.3 58 638-699 116-183 (264)
252 1qy5_A Endoplasmin; GRP94, NEC 97.0 0.00016 5.3E-09 78.2 1.0 58 638-699 76-148 (269)
253 3klo_A Transcriptional regulat 96.9 0.003 1E-07 65.6 10.1 119 738-864 7-129 (225)
254 2ior_A Chaperone protein HTPG; 96.9 0.0004 1.4E-08 73.7 3.1 58 638-699 95-164 (235)
255 3cwo_X Beta/alpha-barrel prote 96.8 0.00024 8.1E-09 74.2 0.3 54 910-964 5-59 (237)
256 1s16_A Topoisomerase IV subuni 96.7 0.0022 7.4E-08 73.0 7.7 49 638-686 64-124 (390)
257 2vyc_A Biodegradative arginine 96.2 0.0084 2.9E-07 74.2 9.2 116 739-858 1-127 (755)
258 3t0h_A Heat shock protein HSP 96.1 0.0028 9.5E-08 66.8 3.6 59 638-700 80-148 (228)
259 2gqp_A Endoplasmin; GRP94, HSP 95.9 0.002 6.9E-08 68.3 1.6 59 638-700 80-153 (236)
260 3lib_A Hypothetical sensory tr 95.5 0.34 1.2E-05 51.8 17.4 171 109-321 7-179 (290)
261 4dah_A Sporulation kinase D; a 95.4 0.57 1.9E-05 47.7 17.8 155 106-325 5-159 (217)
262 1ei1_A DNA gyrase B, GYRB; ATP 95.4 0.019 6.4E-07 65.3 6.9 49 638-686 67-127 (391)
263 3peh_A Endoplasmin homolog; st 95.1 0.013 4.4E-07 63.2 4.3 58 638-699 94-162 (281)
264 3lif_A Putative diguanylate cy 95.1 0.32 1.1E-05 50.9 15.3 157 105-325 3-161 (254)
265 3o0i_A HSP90AA1 protein; HSP90 95.1 0.0062 2.1E-07 65.0 1.8 58 638-699 108-175 (256)
266 1y4s_A Chaperone protein HTPG; 94.9 0.044 1.5E-06 64.8 8.6 47 638-684 75-133 (559)
267 3li9_A Hypothetical sensory tr 94.6 0.45 1.5E-05 50.8 15.1 172 109-320 8-179 (291)
268 2cg9_A ATP-dependent molecular 94.6 0.044 1.5E-06 66.1 7.5 22 638-659 74-95 (677)
269 3lic_A Sensor protein; PDC fol 94.5 1.2 4.1E-05 46.7 17.9 165 110-321 5-176 (274)
270 3fv5_A DNA topoisomerase 4 sub 94.2 0.032 1.1E-06 57.5 4.5 48 638-685 50-109 (201)
271 3nmq_A Heat shock protein HSP 94.0 0.016 5.6E-07 61.1 1.8 57 638-699 87-154 (239)
272 3cwo_X Beta/alpha-barrel prote 93.7 0.013 4.4E-07 60.7 0.3 169 764-964 7-180 (237)
273 2o1u_A Endoplasmin; GRP94, HSP 93.7 0.039 1.3E-06 66.5 4.4 22 638-659 93-114 (666)
274 2ioq_A Chaperone protein HTPG; 93.3 0.05 1.7E-06 65.3 4.4 58 638-699 75-144 (624)
275 3cwv_A DNA gyrase, B subunit, 93.1 0.13 4.5E-06 57.9 7.3 20 549-568 27-46 (369)
276 4emv_A DNA topoisomerase IV, B 90.1 0.27 9.3E-06 51.5 5.2 48 639-686 74-132 (226)
277 4duh_A DNA gyrase subunit B; s 90.1 0.36 1.2E-05 50.4 6.1 48 639-686 69-128 (220)
278 1zxm_A TOPO IIA ATPase, DNA to 89.7 0.34 1.2E-05 55.1 6.0 48 638-685 87-146 (400)
279 3n75_A LDC, lysine decarboxyla 89.3 0.18 6E-06 61.8 3.5 63 900-965 20-83 (715)
280 1pvg_A DNA topoisomerase II; G 87.0 0.76 2.6E-05 52.5 6.7 50 638-687 99-160 (418)
281 3ttz_A DNA gyrase subunit B; p 86.0 0.82 2.8E-05 46.8 5.6 29 549-577 28-59 (198)
282 3lnu_A Topoisomerase IV subuni 79.8 0.66 2.2E-05 52.7 2.1 49 639-687 84-144 (408)
283 3ied_A Heat shock protein; HSP 78.7 0.9 3.1E-05 48.2 2.6 56 638-697 131-197 (272)
284 3c8c_A Methyl-accepting chemot 68.8 81 0.0028 31.2 14.7 151 112-324 3-153 (240)
285 4gfh_A DNA topoisomerase 2; to 63.1 6.8 0.00023 50.4 5.9 49 638-686 94-154 (1177)
286 3rht_A (gatase1)-like protein; 56.1 5.4 0.00019 42.4 2.8 74 887-964 5-85 (259)
287 2oo3_A Protein involved in cat 54.2 22 0.00076 38.2 7.2 81 884-964 111-197 (283)
288 2yxb_A Coenzyme B12-dependent 39.0 59 0.002 31.6 7.0 78 886-964 18-106 (161)
289 3l4e_A Uncharacterized peptida 38.8 69 0.0024 32.5 7.8 72 886-964 27-119 (206)
290 3e4o_A C4-dicarboxylate transp 34.9 52 0.0018 35.5 6.5 60 249-322 142-201 (305)
291 4gud_A Imidazole glycerol phos 33.5 1.5E+02 0.0052 29.4 9.5 75 887-981 3-87 (211)
292 4g81_D Putative hexonate dehyd 32.4 85 0.0029 32.9 7.5 17 671-687 16-32 (255)
293 3cvo_A Methyltransferase-like 29.9 1.4E+02 0.0047 30.3 8.2 87 886-978 51-163 (202)
294 4fn4_A Short chain dehydrogena 29.8 70 0.0024 33.6 6.2 21 672-693 15-35 (254)
295 1wv2_A Thiazole moeity, thiazo 29.5 87 0.003 33.1 6.7 68 893-964 119-193 (265)
296 3r75_A Anthranilate/para-amino 27.6 83 0.0028 37.8 7.1 76 884-964 444-527 (645)
297 3dr5_A Putative O-methyltransf 27.5 1.1E+02 0.0039 30.9 7.3 81 886-972 81-166 (221)
298 3tfw_A Putative O-methyltransf 26.0 1.9E+02 0.0063 29.6 8.8 83 886-973 88-174 (248)
299 3lid_A Putative sensory BOX/gg 25.1 3.6E+02 0.012 28.3 11.1 62 247-321 111-181 (295)
300 1ka9_H Imidazole glycerol phos 24.4 1.8E+02 0.0061 28.7 8.0 77 887-982 3-91 (200)
301 1i1q_B Anthranilate synthase c 23.6 1.2E+02 0.0042 29.8 6.5 75 888-964 2-82 (192)
302 1y80_A Predicted cobalamin bin 22.7 2E+02 0.0068 28.7 8.0 78 886-964 88-177 (210)
303 2i2x_B MTAC, methyltransferase 22.5 2.7E+02 0.0091 29.0 9.2 78 886-964 123-210 (258)
304 2lci_A Protein OR36; structura 22.3 1.7E+02 0.006 25.5 6.1 38 889-926 80-117 (134)
305 3u81_A Catechol O-methyltransf 22.0 2.1E+02 0.0074 28.3 8.1 79 886-964 83-168 (221)
306 2q5c_A NTRC family transcripti 21.0 2.4E+02 0.0082 28.1 8.1 98 887-986 5-123 (196)
307 3h7a_A Short chain dehydrogena 20.8 1.7E+02 0.0057 30.0 7.1 22 672-694 15-36 (252)
308 3lyl_A 3-oxoacyl-(acyl-carrier 20.6 2.1E+02 0.0072 28.8 7.8 20 672-692 13-32 (247)
No 1
>3t4l_A Histidine kinase 4; PAS domain, hormone receptor, endop reticulum; HET: ZEA; 1.53A {Arabidopsis thaliana} PDB: 3t4k_A* 3t4j_A* 3t4o_A* 3t4q_A* 3t4s_A* 3t4t_A*
Probab=100.00 E-value=5.8e-48 Score=421.08 Aligned_cols=268 Identities=65% Similarity=1.011 Sum_probs=248.4
Q ss_pred HhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHhHHHHHHHHHhcccCCCCCCCCCHHHHHHHHhhhhhcCCCcceeeeec
Q 001941 107 MSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAV 186 (993)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~id~~~f~~~t~~~~~~~p~i~~~~~~~ 186 (993)
|+.+..++|++.|.++||+++.+||++|+.++++++++++||+++||+++++.||+++|..|+++++.++|+|+|++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~a~~~a~~L~~~l~~~~~~l~~la~l~~~~~f~~~~~~v~~~~F~~~a~~l~~~~pgi~~l~~ap 80 (270)
T 3t4l_A 1 MDDANKIRREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYHKNPSAIDQETFAEYTARTAFERPLLSGVAYAE 80 (270)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCHHHHHHHHHHTGGGCTTEEEEEEEE
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCHHHHHHHHHHHhhcCCCceEEEEEe
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHhcceeeecccCCCCCCCCCCCCCCCCccceeEeecCCccceeeeccccCcccHHHHHHHHhcCCccc
Q 001941 187 RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266 (993)
Q Consensus 187 ~v~~~er~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~~~~~~~~~~g~D~~s~~~~r~~i~~Ar~tg~~~~ 266 (993)
+|+++||++||++++|.|+++.. ..|++.|++|+||+|+++.|+.++||||+|+|.||++|.+||+||++++
T Consensus 81 ~V~~~~r~~fe~~~~~~I~~~~~--------~~p~~~r~~y~pi~y~ep~N~~alG~D~~S~p~rr~al~~Ar~tg~~~l 152 (270)
T 3t4l_A 81 KVVNFEREMFERQHNWVIKTMDR--------GEPSPVRDEYAPVIFSQDSVSYLESLDMMSGEEDRENILRARETGKAVL 152 (270)
T ss_dssp CEEGGGHHHHHHHHTSCCBCTTT--------CCBCCCCSEECBEEEECGGGGGGBTBBGGGSHHHHHHHHHHHHHSSCEE
T ss_pred ecCHhHHHHHHhccCceeeccCC--------cccCCCCCccceEEEeCCCCccceeeccCCCHHHHHHHHHHHHhCCcEE
Confidence 99999999999999999988752 4699999999999999999999999999999999999999999999999
Q ss_pred ccceeecccCCceeEEEEEeeccCCCCCCChHHHHHhhcceeeeeeehHHHHHHHHHhhcccceEEEEeecccCCCCcee
Q 001941 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQLASKQTIFVNVYDITNLSHPIS 346 (993)
Q Consensus 267 t~p~~l~~~~~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~~~~v~~l~~~ll~~~~~~~~i~v~~yd~~~~~~~~~ 346 (993)
|+|++|+|.++.|+++++|||..+.+++.|+++|+++++||++++|++++|++.++.++...+.+.+.+||.++.+.+..
T Consensus 153 s~pv~Lvq~~~~G~ll~~PVy~~~~~~~~t~~~R~~~~~G~v~~v~~~~~l~~~~l~~~~~~~~l~l~i~D~~~~~~~~~ 232 (270)
T 3t4l_A 153 TSPFRLLETHHLGVVLTFPVYKSSLPENPTVEERIAATAGYLGGAFDVESLVENLLGQLAGNQAIVVHVYDITNASDPLV 232 (270)
T ss_dssp CCCEECTTTCCEEEEEEEEEECTTCCSSCCHHHHHHTEEEEEEEEECHHHHHHHHHHTSTTGGGEEEEEEECSSTTSCEE
T ss_pred ecCeeeccCCCceEEEEEEeecCCCCCCCCHHHHHHHHhhEEEEEEEHHHHHHHHhhccccCCcEEEEEEECCCCCCCcc
Confidence 99999999889999999999999877778999999999999999999999999999877656789999999988777889
Q ss_pred cccCccCC--CcceEEEeccCCCccccccceehhcccC
Q 001941 347 MYGSNVSD--DGLWLVSTLNFGDPFRKHEMRCRFKQKA 382 (993)
Q Consensus 347 ~y~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 382 (993)
+|++.... .++.+.+.++||+|+|+|+|+|+|++++
T Consensus 233 ly~s~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~ 270 (270)
T 3t4l_A 233 MYGNQDEEADRSLSHESKLDFGDPFRKHKMICRYHQKA 270 (270)
T ss_dssp EECC--CCCCTTCCEEEEECCSCTTCCEEEEEEECC--
T ss_pred cccCCCCCCCCcceEEEEeecCCchhhhheeeecccCC
Confidence 99987754 3447899999999999999999999874
No 2
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=8.7e-38 Score=338.09 Aligned_cols=232 Identities=26% Similarity=0.400 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q 001941 428 KKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE---LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLE 504 (993)
Q Consensus 428 ~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~---l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~ 504 (993)
+++++.++.|.+|++++||||||||++|.+++++|.+.. .....+++++.+..++++|..++++++++++++.+...
T Consensus 11 ~~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~ 90 (258)
T 2c2a_A 11 ERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQ 90 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 345556677889999999999999999999999986531 23455789999999999999999999999999999999
Q ss_pred eeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCC----eEEEEEEEe
Q 001941 505 LEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG----HIFVTVYLV 580 (993)
Q Consensus 505 l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G----~I~v~v~~~ 580 (993)
+...++++.+++++++..+...+..+++.+.+..+...+..+.+|+.+|.||+.||++||+||++.| .|.+.+...
T Consensus 91 ~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~ 170 (258)
T 2c2a_A 91 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK 170 (258)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE
T ss_pred CccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecC
Confidence 8899999999999999999999999999998877655556688999999999999999999999654 344443211
Q ss_pred ecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCc
Q 001941 581 EEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPF 660 (993)
Q Consensus 581 e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF 660 (993)
...+.|+|+|+|+|||++.+++||+||
T Consensus 171 -----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~f 197 (258)
T 2c2a_A 171 -----------------------------------------------------DGGVLIIVEDNGIGIPDHAKDRIFEQF 197 (258)
T ss_dssp -----------------------------------------------------TTEEEEEEEECSSCCCGGGTTGGGSTT
T ss_pred -----------------------------------------------------CCeEEEEEEecCCCCCHHHHHhhcccc
Confidence 124679999999999999999999999
Q ss_pred cccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 661 MQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 661 ~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
|+.+.+.+...+|+||||+|||++++.|||+|++.|.+|+||+|+|++|...
T Consensus 198 ~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 198 YRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR 249 (258)
T ss_dssp CCCC---------CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC
T ss_pred ccCCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCCcEEEEEeeCCC
Confidence 9988766666679999999999999999999999999999999999999854
No 3
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=4.8e-33 Score=301.84 Aligned_cols=230 Identities=28% Similarity=0.440 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001941 424 MELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTE-LDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGK 502 (993)
Q Consensus 424 ~el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~-l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~ 502 (993)
.+..++++++++.+.+|++.++|||||||++|.++++++.+.. .++..+++++.+..+++++..++++++++++.+.+.
T Consensus 27 ~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~ 106 (268)
T 4ew8_A 27 ADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGE 106 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3444566666777889999999999999999999999997654 566778999999999999999999999999999999
Q ss_pred cceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccC-CeEEEEEEEee
Q 001941 503 LELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVE 581 (993)
Q Consensus 503 l~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~v~~~e 581 (993)
..+...++++.+++++++..+...+..+++.+.+.+++..+ .+.+|+..|.+|+.||+.||+||++. |.|.|.+...
T Consensus 107 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~-~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~- 184 (268)
T 4ew8_A 107 MALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG-LIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA- 184 (268)
T ss_dssp CCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC-EEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEEC-
T ss_pred cceeeeeccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCc-eEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEec-
Confidence 99999999999999999999999999999999999877654 57899999999999999999999976 6776665321
Q ss_pred cccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCcc
Q 001941 582 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661 (993)
Q Consensus 582 ~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~ 661 (993)
...+.|+|.|+|+||+++.++++|+||+
T Consensus 185 ----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~if~~~~ 212 (268)
T 4ew8_A 185 ----------------------------------------------------LGEVRLDVSDTGRGVPFHVQAHIFDRFV 212 (268)
T ss_dssp ----------------------------------------------------SSEEEEEEEESSCCCCHHHHTTTTSTTC
T ss_pred ----------------------------------------------------CCEEEEEEEcCCCCCCHHHHHHHHHHHh
Confidence 1247899999999999999999999998
Q ss_pred ccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCC
Q 001941 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713 (993)
Q Consensus 662 q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~ 713 (993)
+. +.+|+||||+||+++++.|||+|.+.|.+++||+|+|++|....
T Consensus 213 ~~------~~~g~GlGL~i~~~~~~~~gG~i~i~s~~~~Gt~~~i~lP~~~~ 258 (268)
T 4ew8_A 213 GR------DRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPETQQ 258 (268)
T ss_dssp CC------SSCCCTTHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEECCC-
T ss_pred cC------CCCCCcccHHHHHHHHHHcCCEEEEEecCCCCEEEEEEecCCCC
Confidence 53 34699999999999999999999999999999999999998643
No 4
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=8.7e-33 Score=317.98 Aligned_cols=227 Identities=15% Similarity=0.206 Sum_probs=190.1
Q ss_pred HHHHHHHHhhccccHhhHhHHHHHH-HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEee
Q 001941 432 AADVAKSQFLATVSHEIRTPMNGVL-GMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSF 510 (993)
Q Consensus 432 ~a~~aKs~Fla~vSHELRTPL~~I~-g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~ 510 (993)
+.++++++|+++++||+||||+.|. |+.+++.....++..+++++.+..+..+|..++++++++++++.+...+...++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~ 195 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRL 195 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCC
Confidence 4456788999999999999999999 666665544446677899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhhhhcc---CcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCC---------eEEEEEE
Q 001941 511 NLRAILDDVLSLFSGKSQDK---GVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG---------HIFVTVY 578 (993)
Q Consensus 511 dL~~ll~~vl~~~~~~a~~k---~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G---------~I~v~v~ 578 (993)
++.+++++++..+...+..+ .+.+.+..+. +..+.+|+.+|.|||.|||+||+||+.+| .|.|++.
T Consensus 196 ~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~--~~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~ 273 (388)
T 1gkz_A 196 SPKKIIEKWVDFARRLCEHKYGNAPRVRINGHV--AARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA 273 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEST--TCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccC--CCceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEE
Confidence 99999999999999998888 3333444433 34577899999999999999999999765 5766653
Q ss_pred EeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccC
Q 001941 579 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFT 658 (993)
Q Consensus 579 ~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe 658 (993)
.. ...+.|+|+|+|+|||++.+++||+
T Consensus 274 ~~-----------------------------------------------------~~~v~i~V~D~G~GI~~~~~~~iF~ 300 (388)
T 1gkz_A 274 NN-----------------------------------------------------DVDLIIRISDRGGGIAHKDLDRVMD 300 (388)
T ss_dssp EC-----------------------------------------------------SSEEEEEEECCSCCCCTTTTTTTTS
T ss_pred eC-----------------------------------------------------CCEEEEEEEEeCCCcCHHHHHHhcC
Confidence 21 1247899999999999999999999
Q ss_pred CccccCCCC--------------------cCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCC
Q 001941 659 PFMQVGPSI--------------------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713 (993)
Q Consensus 659 pF~q~~~s~--------------------s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~ 713 (993)
|||+.+++. ++..+|+||||+|||.+++.|||+|.+.|.+|.||+|+|+||....
T Consensus 301 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~~ 375 (388)
T 1gkz_A 301 YHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDG 375 (388)
T ss_dssp TTCCCC-------------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECSSS
T ss_pred cccccCCCcccccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCCCcEEEEEEecCCCC
Confidence 999987643 2334799999999999999999999999999999999999998643
No 5
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=100.00 E-value=8.1e-34 Score=298.27 Aligned_cols=215 Identities=18% Similarity=0.280 Sum_probs=133.8
Q ss_pred HHHhhccccHhhHhHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHH
Q 001941 437 KSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAI 515 (993)
Q Consensus 437 Ks~Fla~vSHELRTPL~~I~g~lelL~~~~l~-~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~l 515 (993)
+.+|++.+||||||||++|.++++++.....+ +...++++.+..+++++..++++++++++.+.+.......++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 35799999999999999999999988655433 33467788888999999999999999999999988888899999999
Q ss_pred HHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCC-eEEEEEEEeecccccchhhhhcc
Q 001941 516 LDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEVETELS 594 (993)
Q Consensus 516 l~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~v~~~e~~~~~i~i~~~~~ 594 (993)
+++++..+...+..+++.+.+.+++.. ..+.+|+..|.||+.||+.||+||++.| .|.|.+. .
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~--~------------- 145 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHS-IKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLN--A------------- 145 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCS-CEEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEEC--S-------------
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcc-eEEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEEc--c-------------
Confidence 999999999999999999999987663 4678999999999999999999999665 4444331 0
Q ss_pred cccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCc
Q 001941 595 SSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGT 674 (993)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~Gt 674 (993)
+ .|+|+|+|+|||++.++++|+||++.+. ...+|+
T Consensus 146 --------------------------------------~----~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~~g~ 180 (222)
T 3jz3_A 146 --------------------------------------D----NFIVRDNGPGVTPEALARIGERFYRPPG---QTATGS 180 (222)
T ss_dssp --------------------------------------S----EEEEECSCC----------------------------
T ss_pred --------------------------------------C----eEEEEECCCCCCHHHHHHHHhhhccCCC---CCCCcc
Confidence 0 1789999999999999999999997532 334699
Q ss_pred cchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 675 GIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 675 GLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
||||+|||++++.|||+|+++|.+++||+|+|++|...
T Consensus 181 GlGL~i~~~i~~~~gG~i~i~s~~~~Gt~v~~~~P~~~ 218 (222)
T 3jz3_A 181 GLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWLEHH 218 (222)
T ss_dssp -CTHHHHHHHHHHTTCEEECCBCTTSSBEEEEECCCC-
T ss_pred cccHHHHHHHHHHcCCEEEEEcCCCCcEEEEEeecCCC
Confidence 99999999999999999999999999999999999764
No 6
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=100.00 E-value=1.6e-32 Score=316.42 Aligned_cols=219 Identities=18% Similarity=0.236 Sum_probs=173.7
Q ss_pred HhhccccHhhHh-----HHHHHHHHHHHHhcCCCChHH----HHHHH--HHHHHHHHHHHHHHHHHHHHhhhc-CCccee
Q 001941 439 QFLATVSHEIRT-----PMNGVLGMLDMLMDTELDVTQ----QDYVR--TAQASGKALVSLINEVLDQAKVES-GKLELE 506 (993)
Q Consensus 439 ~Fla~vSHELRT-----PL~~I~g~lelL~~~~l~~~q----~~~l~--~i~~s~~~L~~lIndlLd~skies-g~l~l~ 506 (993)
+|+++++||||| ||+.|.|+++++.....+... ++|++ .+...+.+| +|+++|++++.++ +...+.
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 478889999999 889999999998765444333 34777 477888888 9999999999988 566666
Q ss_pred e----EeecHHHHHHHHHHHHhhhhhc-----cCcEEEEEe--cCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCe---
Q 001941 507 A----VSFNLRAILDDVLSLFSGKSQD-----KGVELAVYI--SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH--- 572 (993)
Q Consensus 507 ~----~~~dL~~ll~~vl~~~~~~a~~-----k~I~l~~~i--~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~--- 572 (993)
. .++|+.+++++++..+...+.. +++.+.+.. .+..+..+.+|+.+|+|||.||++||+||++.|+
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 254 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESS 254 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 6 8899999999999999998886 999888754 1233457889999999999999999999997664
Q ss_pred -----EEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCC
Q 001941 573 -----IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 647 (993)
Q Consensus 573 -----I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G 647 (993)
|.|++... ...+.|+|+|+|+|
T Consensus 255 ~~~~~I~I~~~~~-----------------------------------------------------~~~v~i~V~D~G~G 281 (394)
T 2btz_A 255 LILPPIKVMVALG-----------------------------------------------------EEDLSIKMSDRGGG 281 (394)
T ss_dssp SCCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEECSCC
T ss_pred CCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEeCCCC
Confidence 77765321 12478999999999
Q ss_pred CChhhHhhccCCccccCCC-----CcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 648 IPLEAQSRIFTPFMQVGPS-----ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 648 I~~e~~~~IFepF~q~~~s-----~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
||++.+++||+|||+.+.+ .++..+|+||||+|||.+++.|||+|.+.|.+|+||+|+|++|...
T Consensus 282 I~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2btz_A 282 VPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALS 351 (394)
T ss_dssp CCHHHHHHHTCTTTTCCC--------------CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESST
T ss_pred CCHHHHHHHhcccccCCCCCCcccCCCCCCCccCCHHHHHHHHHHhCCEEEEEecCCCceEEEEEecCCC
Confidence 9999999999999998775 4555689999999999999999999999999999999999999864
No 7
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=100.00 E-value=4.2e-32 Score=313.01 Aligned_cols=218 Identities=16% Similarity=0.227 Sum_probs=183.2
Q ss_pred HhhccccHhhHh-----HHHHHHHHHHHHhcCCC----ChHHHHHHH--HHHHHHHHHHHHHHHHHH-HHhhhcCCccee
Q 001941 439 QFLATVSHEIRT-----PMNGVLGMLDMLMDTEL----DVTQQDYVR--TAQASGKALVSLINEVLD-QAKVESGKLELE 506 (993)
Q Consensus 439 ~Fla~vSHELRT-----PL~~I~g~lelL~~~~l----~~~q~~~l~--~i~~s~~~L~~lIndlLd-~skiesg~l~l~ 506 (993)
+|+++++||||| ||+.|.|+++++..... .+..+++++ .+.+.+.+| +|+++|+ +++. ++...+.
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~~ 173 (394)
T 2e0a_A 97 SDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPSH 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTTS
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCCc
Confidence 477888899999 88888999997765432 334477888 688889999 9999999 6776 6766666
Q ss_pred e----EeecHHHHHHHHHHHHhhhhhcc-----CcEEEEEe--cCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCe---
Q 001941 507 A----VSFNLRAILDDVLSLFSGKSQDK-----GVELAVYI--SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGH--- 572 (993)
Q Consensus 507 ~----~~~dL~~ll~~vl~~~~~~a~~k-----~I~l~~~i--~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~--- 572 (993)
. .++|+.+++++++..+...+..+ ++++.+++ .+..+..+.+|+.+|+|||.|||+||+||+.+|+
T Consensus 174 ~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 253 (394)
T 2e0a_A 174 IGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQ 253 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6 78999999999999999999988 99888754 2233457889999999999999999999997654
Q ss_pred -----EEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCC
Q 001941 573 -----IFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG 647 (993)
Q Consensus 573 -----I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G 647 (993)
|.|++... ...+.|+|+|+|+|
T Consensus 254 ~~~~~I~I~~~~~-----------------------------------------------------~~~v~i~V~D~G~G 280 (394)
T 2e0a_A 254 PSLTPIEVIVVLG-----------------------------------------------------KEDLTIKISDRGGG 280 (394)
T ss_dssp SSCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEECSCC
T ss_pred CCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEeCCCC
Confidence 77765321 12478999999999
Q ss_pred CChhhHhhccCCccccCCC------CcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 648 IPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 648 I~~e~~~~IFepF~q~~~s------~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
||++.+++||+|||+.+.+ .++..+|+||||+|||.+++.|||+|.+.|.+|.||+|+|++|...
T Consensus 281 I~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 281 VPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALS 351 (394)
T ss_dssp CCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred cCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcccCHHHHHHHHHHhCCEEEEEecCCccEEEEEEeCCCC
Confidence 9999999999999998775 5556689999999999999999999999999999999999999853
No 8
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=100.00 E-value=1e-31 Score=311.09 Aligned_cols=219 Identities=20% Similarity=0.227 Sum_probs=178.9
Q ss_pred HHhhccccHhhHh-----HHHHHHHHHHHHhcCCCCh----HHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhc----C-
Q 001941 438 SQFLATVSHEIRT-----PMNGVLGMLDMLMDTELDV----TQQDYVRT--AQASGKALVSLINEVLDQAKVES----G- 501 (993)
Q Consensus 438 s~Fla~vSHELRT-----PL~~I~g~lelL~~~~l~~----~q~~~l~~--i~~s~~~L~~lIndlLd~skies----g- 501 (993)
.+|.+.+ ||||| ||+.|.|+++++.....+. ..+++++. +...+.+| +|+++|++++.+. +
T Consensus 107 ~~f~~~~-HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~~ 183 (407)
T 2q8g_A 107 YDFTDTV-IRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPSH 183 (407)
T ss_dssp HHHHHHH-HHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC---------
T ss_pred HHHHHHH-HHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCCC
Confidence 4555555 99999 9999999999877544332 23567777 67778888 9999999999976 3
Q ss_pred --CcceeeEeecHHHHHHHHHHHHhhhhhcc-----CcEEEEEe--cCCCCceEEeCHHHHHHHHHHHHHHHHhcccCC-
Q 001941 502 --KLELEAVSFNLRAILDDVLSLFSGKSQDK-----GVELAVYI--SDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG- 571 (993)
Q Consensus 502 --~l~l~~~~~dL~~ll~~vl~~~~~~a~~k-----~I~l~~~i--~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G- 571 (993)
...+...++++.+++++++..+...+..+ ++.+.+.+ .+..+..+.+|+.+|+|||.|||+||+||+.+|
T Consensus 184 ~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~ 263 (407)
T 2q8g_A 184 RKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHH 263 (407)
T ss_dssp -CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56677889999999999999999999888 99988876 123345788999999999999999999999765
Q ss_pred -------eEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEc
Q 001941 572 -------HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644 (993)
Q Consensus 572 -------~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 644 (993)
.|.|++... ...+.|+|+|+
T Consensus 264 ~~~~~~~~I~I~~~~~-----------------------------------------------------~~~v~i~V~D~ 290 (407)
T 2q8g_A 264 ANRGVYPPIQVHVTLG-----------------------------------------------------NEDLTVKMSDR 290 (407)
T ss_dssp TTTCCCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEEC
T ss_pred ccCCCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEec
Confidence 477665321 12478999999
Q ss_pred CCCCChhhHhhccCCccccCCC------CcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 645 GQGIPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 645 G~GI~~e~~~~IFepF~q~~~s------~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
|+|||++.+++||+|||+.+.+ ..+..+|+||||+|||.+++.|||+|.+.|.+|+||+|+|++|...
T Consensus 291 G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 291 GGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALS 364 (407)
T ss_dssp SCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred CCCCCHHHHHHHhCccccCCCCCCccccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcCCCceEEEEEECCCC
Confidence 9999999999999999998775 2445579999999999999999999999999999999999999853
No 9
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.97 E-value=7.1e-31 Score=279.88 Aligned_cols=214 Identities=23% Similarity=0.385 Sum_probs=181.9
Q ss_pred HHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHH
Q 001941 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 513 (993)
Q Consensus 435 ~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~-~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~ 513 (993)
+++.+|++.++|||||||++|.++++++.+...+ +..+++++.+..+++++..++++++++++.+.+ ...++++.
T Consensus 12 ~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l~ 87 (244)
T 3d36_A 12 EAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNVK 87 (244)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEHH
T ss_pred HHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhHH
Confidence 4568999999999999999999999999876554 445789999999999999999999999987765 35678999
Q ss_pred HHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccc-CCeEEEEEEEeecccccchhhhh
Q 001941 514 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE-KGHIFVTVYLVEEVVDSIEVETE 592 (993)
Q Consensus 514 ~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~-~G~I~v~v~~~e~~~~~i~i~~~ 592 (993)
.++++++..+...+..+++.+.+..++ ..+.+|+..|.+|+.||+.||+||++ .|.|.|.+...
T Consensus 88 ~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~------------ 152 (244)
T 3d36_A 88 LEIERVIDILRPLANMSCVDIQATLAP---FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSID------------ 152 (244)
T ss_dssp HHHHHHHHHHHHHHTTTTEEEEEECCC---CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEE------------
T ss_pred HHHHHHHHHHHHHHHhcCeEEeccCCC---ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEe------------
Confidence 999999999999999999998887653 46789999999999999999999994 56666665321
Q ss_pred cccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCC
Q 001941 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (993)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~ 672 (993)
...+.|+|+|+|+||+++..+++|+||++.+ ..+
T Consensus 153 -----------------------------------------~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~-----~~~ 186 (244)
T 3d36_A 153 -----------------------------------------NGRVLIRIADTGVGMTKEQLERLGEPYFTTK-----GVK 186 (244)
T ss_dssp -----------------------------------------TTEEEEEEEECSSCCCHHHHHHTTSTTCCSS-----GGG
T ss_pred -----------------------------------------CCEEEEEEEecCCCCCHHHHHHHhcccccCC-----CCC
Confidence 1247899999999999999999999999643 246
Q ss_pred CccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCC
Q 001941 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713 (993)
Q Consensus 673 GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~ 713 (993)
|+||||++|+++++.|||+|.+.|.+++||+|+|++|+...
T Consensus 187 g~GlGL~i~~~i~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 227 (244)
T 3d36_A 187 GTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPLASS 227 (244)
T ss_dssp CCSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC-
T ss_pred CcchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEecCCCC
Confidence 89999999999999999999999999999999999999754
No 10
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.97 E-value=4.6e-31 Score=306.71 Aligned_cols=220 Identities=18% Similarity=0.243 Sum_probs=168.6
Q ss_pred HHHhhccccHhhHhHHH-----HHHHHHHHHhcCCCC----hHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhh-cCCcc
Q 001941 437 KSQFLATVSHEIRTPMN-----GVLGMLDMLMDTELD----VTQQDYVRTAQAS--GKALVSLINEVLDQAKVE-SGKLE 504 (993)
Q Consensus 437 Ks~Fla~vSHELRTPL~-----~I~g~lelL~~~~l~----~~q~~~l~~i~~s--~~~L~~lIndlLd~skie-sg~l~ 504 (993)
+.+|.+ ++|||||||+ .|.|+++++.....+ ++.+++++.+..+ +.+| +|+++|.+.+.. .+...
T Consensus 118 ~~~f~~-~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~ 194 (419)
T 1y8o_A 118 LDNFLQ-VLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHP 194 (419)
T ss_dssp HHHHHH-HHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSST
T ss_pred HHHHHH-HHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCC
Confidence 345664 6699999999 789999987653322 2345677776555 7777 999997666543 33332
Q ss_pred e----eeEeecHHHHHHHHHHHHhhhhhc-----cCcEEEEEec--CCCCceEEeCHHHHHHHHHHHHHHHHhcccCC--
Q 001941 505 L----EAVSFNLRAILDDVLSLFSGKSQD-----KGVELAVYIS--DRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-- 571 (993)
Q Consensus 505 l----~~~~~dL~~ll~~vl~~~~~~a~~-----k~I~l~~~i~--~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G-- 571 (993)
. ...++|+.+++++++..+...+.. +++.+.+... +..+..+.+|+.+|+|||.||++||+||+.+|
T Consensus 195 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~ 274 (419)
T 1y8o_A 195 KHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYE 274 (419)
T ss_dssp TSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 347899999999999999888876 8888876442 13345788999999999999999999999765
Q ss_pred -------eEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEc
Q 001941 572 -------HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDT 644 (993)
Q Consensus 572 -------~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 644 (993)
.|.|.+... ...+.|+|+|+
T Consensus 275 ~~~~~~~~I~I~~~~~-----------------------------------------------------~~~v~I~V~D~ 301 (419)
T 1y8o_A 275 DRKEGYPAVKTLVTLG-----------------------------------------------------KEDLSIKISDL 301 (419)
T ss_dssp TCSSCCCCEEEEEEEC-----------------------------------------------------SSEEEEEEEEC
T ss_pred ccCCCCCCEEEEEEeC-----------------------------------------------------CCEEEEEEEEC
Confidence 466665321 12478999999
Q ss_pred CCCCChhhHhhccCCccccCCC------CcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 645 GQGIPLEAQSRIFTPFMQVGPS------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 645 G~GI~~e~~~~IFepF~q~~~s------~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
|+|||++.+++||+|||+.+++ .++..+|+||||+|||.+++.|||+|.+.|.+|.||+|+|++|...
T Consensus 302 G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g~Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 302 GGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALS 375 (419)
T ss_dssp SCCCCHHHHGGGGCTTTC-------------CC--CTTHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESCG
T ss_pred CCCCCHHHHHHHhCcccccCCCCCccccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecCCCCEEEEEEecCCC
Confidence 9999999999999999998765 4455689999999999999999999999999999999999999853
No 11
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.97 E-value=1.6e-30 Score=292.06 Aligned_cols=214 Identities=28% Similarity=0.421 Sum_probs=179.8
Q ss_pred HHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHH
Q 001941 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELD-VTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLR 513 (993)
Q Consensus 435 ~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~-~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~ 513 (993)
.++++|++.++|||||||++|.++++++.+...+ +...++++.+..+++++..++++++++++. ...+...++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ccccCCcccCHH
Confidence 3567899999999999999999999999765433 345789999999999999999999999994 335677889999
Q ss_pred HHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcc-cCCeEEEEEEEeecccccchhhhh
Q 001941 514 AILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVVDSIEVETE 592 (993)
Q Consensus 514 ~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT-~~G~I~v~v~~~e~~~~~i~i~~~ 592 (993)
+++++++..+...+..+++.+.+.+++.. ..+.+|+..|.||+.||+.||+||+ +.|.|.|++...
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~------------ 273 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFETDNED-LRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDM------------ 273 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEESCSC-CEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEE------------
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEecCCCC-ceEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEec------------
Confidence 99999999999999999999988887553 4678999999999999999999999 567777765421
Q ss_pred cccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCC
Q 001941 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (993)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~ 672 (993)
...+.|+|+|+|+|||++.+++||+||++.+ .+
T Consensus 274 -----------------------------------------~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~------~~ 306 (349)
T 3a0r_A 274 -----------------------------------------YTKVRVSVWNSGPPIPEELKEKIFSPFFTTK------TQ 306 (349)
T ss_dssp -----------------------------------------TTEEEEEEEEESCCCCGGGGTTTSSSCCCC---------
T ss_pred -----------------------------------------CCEEEEEEEECCCCCChHHHhhcCCCCccCC------CC
Confidence 1247899999999999999999999999642 36
Q ss_pred CccchHHHHHHHHH-HcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 673 GTGIGLSISKYLVG-RMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 673 GtGLGLsI~k~LVe-~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
|+||||+|||++++ .|||.|.++|.++ ||+|+|++|...
T Consensus 307 g~GlGL~i~~~~v~~~~gg~i~~~~~~~-Gt~f~i~lP~~~ 346 (349)
T 3a0r_A 307 GTGLGLSICRKIIEDEHGGKIWTENREN-GVVFIFEIPKTP 346 (349)
T ss_dssp ---CCCTHHHHHHHHTTCSBCCEEECSS-EEEEEEEEESCT
T ss_pred CccchHHHHHHHHHHhCCCEEEEEeCCC-cEEEEEEecCCC
Confidence 99999999999999 8999999999864 999999999854
No 12
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.97 E-value=1.2e-29 Score=273.91 Aligned_cols=195 Identities=16% Similarity=0.158 Sum_probs=149.9
Q ss_pred hhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHHHHHHH
Q 001941 440 FLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRAILDDV 519 (993)
Q Consensus 440 Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ll~~v 519 (993)
+.++|||||||||++|.|++++|.+...++..+++++.+.++++++..+ +++.++..+.. ....++++.++..
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~~~~~~l----l~~~r~~~~~~-~~~~~~~~~~l~~-- 121 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKLADL----LQFTRVAFGAS-ASAENFDSRELEK-- 121 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHH----HHHHHHHTTCC-SSCCCEEHHHHHH--
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHH----HHHHHHhhccc-cccccccHHHHHH--
Confidence 6678999999999999999999988777777788889888888776555 45666544432 2334577766543
Q ss_pred HHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCC-eEEEEEEEeecccccchhhhhcccccC
Q 001941 520 LSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKG-HIFVTVYLVEEVVDSIEVETELSSSKN 598 (993)
Q Consensus 520 l~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G-~I~v~v~~~e~~~~~i~i~~~~~~~~~ 598 (993)
.+...+..+++++...+++. .++..+.|++.||++||+||++.| .|.|++...+
T Consensus 122 --~~~~~~~~~~i~l~~~~~~~------~~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~----------------- 176 (247)
T 4fpp_A 122 --LAQGVFAHVRPTLDWQIEPQ------AMNKPSSRAVLNIAQIAASALPAGGVATVKGVAAD----------------- 176 (247)
T ss_dssp --HHHHHHTTSSSEEEECCCSC------EECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEET-----------------
T ss_pred --HHHHHHHhhhhhccccccch------hhhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEEC-----------------
Confidence 33445567788877655432 136789999999999999999764 6666553211
Q ss_pred cCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCC--CChhhHhhccCCccccCCCCcCcCCCccc
Q 001941 599 TLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQG--IPLEAQSRIFTPFMQVGPSISRTHGGTGI 676 (993)
Q Consensus 599 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~G--I~~e~~~~IFepF~q~~~s~s~~~~GtGL 676 (993)
..+.|+|+|+|+| ||++..+++|+||++. +.+|+||
T Consensus 177 ------------------------------------~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~------~~~G~GL 214 (247)
T 4fpp_A 177 ------------------------------------GRFSIIADAKGPRARLRPEVLAGLKGEPLAE------GLGGPWV 214 (247)
T ss_dssp ------------------------------------TEEEEEEEEESTTCCCCHHHHHHHTTCCCCS------SCHHHHH
T ss_pred ------------------------------------CEEEEEEEEcCCCCCCCHHHHHHhcCCCCCC------CCCCccH
Confidence 1356888888876 7789999999999742 3469999
Q ss_pred hHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEE
Q 001941 677 GLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAV 709 (993)
Q Consensus 677 GLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp 709 (993)
||+|||+||+.|||+|+++|.+| |++|+++||
T Consensus 215 GLai~~~iv~~hGG~i~v~s~~~-G~~f~v~LP 246 (247)
T 4fpp_A 215 QAAYLNALVRAAGGQIAVEIGED-RASIAAWVP 246 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETT-EEEEEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEEcCC-EEEEEEEec
Confidence 99999999999999999999876 999999998
No 13
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.94 E-value=4.8e-27 Score=269.31 Aligned_cols=248 Identities=15% Similarity=0.173 Sum_probs=176.6
Q ss_pred HHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecHHH
Q 001941 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNLRA 514 (993)
Q Consensus 435 ~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL~~ 514 (993)
.+|.+|+++++|||+||++.+.++.+.+.. +.+..++++|..+++++++++.- . ..+++..
T Consensus 8 ~~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~~------~--~~~~~~~ 68 (379)
T 1b3q_A 8 IEKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVMK------I--RMVPISF 68 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHHH------H--HEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHHH------c--ceecHHH
Confidence 467899999999999999999887665432 46778889999999999998731 2 2456778
Q ss_pred HHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHH---HHHHHHHHHHHHHHhcc-------------cCCeEEEEEE
Q 001941 515 ILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPG---RFRQIITNLMGNSIKFT-------------EKGHIFVTVY 578 (993)
Q Consensus 515 ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~---rL~QIL~NLL~NAiKfT-------------~~G~I~v~v~ 578 (993)
+++.+...+...+..++.++.+.++... +..|+. ++.|+|.||+.||+||+ +.|.|.+++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~---~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~ 145 (379)
T 1b3q_A 69 VFNRFPRMVRDLAKKMNKEVNFIMRGED---TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSAR 145 (379)
T ss_dssp HHTTHHHHHHHHHHHTTCCEEEEEECTT---CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEcCCC---eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEE
Confidence 8888888888888887777777665442 245775 45555999999999996 5677777664
Q ss_pred EeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhH-----
Q 001941 579 LVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ----- 653 (993)
Q Consensus 579 ~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~----- 653 (993)
.. ...+.|+|+|+|+||+++.+
T Consensus 146 ~~-----------------------------------------------------~~~v~i~V~D~G~Gi~~~~~~~~a~ 172 (379)
T 1b3q_A 146 HE-----------------------------------------------------GNNVVIEVEDDGRGIDKEKIIRKAI 172 (379)
T ss_dssp EE-----------------------------------------------------TTEEEEEEEECSCCCCHHHHHHHHH
T ss_pred Ee-----------------------------------------------------CCEEEEEEEECCCCCCHHHHHHHHH
Confidence 21 12478999999999999987
Q ss_pred -------------------hhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCC
Q 001941 654 -------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714 (993)
Q Consensus 654 -------------------~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~~ 714 (993)
++||+|||+.... .+..+|+|+||+|||++++.|||+|+++|.+|+||+|++++|+....
T Consensus 173 ~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~-~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~lPl~~~~ 251 (379)
T 1b3q_A 173 EKGLIDESKAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSMGIESEKDKGTKVTIRLPLTLAI 251 (379)
T ss_dssp HSSSCCSTTTTTSCTHHHHSGGGSTTCC------------CCCSHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSCEE
T ss_pred HcCCCChhhhhcCCHHHHHHHhcCCCCccCCc-cCCCCCccccHHHHHHHHHHCCCEEEEEEcCCCCeEEEeccCCcccc
Confidence 8999999887554 23457999999999999999999999999999999999999986531
Q ss_pred CCCC-----------cc-ccccccCCCCCCCcccCCceEEEeCCchhhHHHHHHHH
Q 001941 715 STSN-----------EH-NSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHI 758 (993)
Q Consensus 715 ~~~~-----------~~-~~~~~~~~~~~~~~~~~g~rvLvvdd~~~~~~v~~~~L 758 (993)
.... +. ........+........|.+++.++|+.+....++..|
T Consensus 252 ~~~l~v~vg~~~~aiP~~~V~e~~~~~~~~i~~~~~~~vl~vrg~~vpl~~L~~lL 307 (379)
T 1b3q_A 252 ICALLVKVNNLVYAIPIANIDTILSISKEDIQRVQDRDVIVIRGEVIPVYRLWEVL 307 (379)
T ss_dssp EEEEEEEETTEEEEEEGGGEEEEECCBSTTCEEETTEEEEEETTEEEEEEEHHHHT
T ss_pred ceEEEEEECCEEEccchheeeEEEeeCHHHeEEeCCccEEEECCcEEeEEEHHHHh
Confidence 1000 00 00001111111122346789999999987666555544
No 14
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.90 E-value=3.6e-23 Score=204.67 Aligned_cols=145 Identities=23% Similarity=0.364 Sum_probs=126.5
Q ss_pred EeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccc
Q 001941 508 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 587 (993)
Q Consensus 508 ~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i 587 (993)
+++++.+++++++..+...+..+++.+.+.+++.. .+.+|+..|.||+.||+.||+||++. .|.|++...
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~-~i~i~~~~~------- 71 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQT------- 71 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEEC-------
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc--eEeeCHHHHHHHHHHHHHHHHHhCcC-eEEEEEEec-------
Confidence 46899999999999999999999999999887654 47899999999999999999999976 555554321
Q ss_pred hhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCC
Q 001941 588 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667 (993)
Q Consensus 588 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~ 667 (993)
...+.|+|+|+|+||+++.++++|+||++.+..
T Consensus 72 ----------------------------------------------~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~- 104 (152)
T 1id0_A 72 ----------------------------------------------DEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL- 104 (152)
T ss_dssp ----------------------------------------------SSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC-
T ss_pred ----------------------------------------------CCEEEEEEEeCCCCcCHHHHHHHhccceeccCC-
Confidence 124689999999999999999999999986542
Q ss_pred cCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 668 s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
.+|+||||++|+++++.|||+|.+.|.+++||+|++++|+..
T Consensus 105 ---~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~ 146 (152)
T 1id0_A 105 ---RPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQH 146 (152)
T ss_dssp ---CTTCCSCHHHHHHHHHHTTCEEEEEECTTSSEEEEEEECCCC
T ss_pred ---CCCcccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeccc
Confidence 368999999999999999999999999999999999999864
No 15
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.90 E-value=4.3e-23 Score=216.62 Aligned_cols=189 Identities=9% Similarity=0.087 Sum_probs=140.7
Q ss_pred HHHHHhhccccHhhHhHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeEeecH
Q 001941 435 VAKSQFLATVSHEIRTPMNGVLGMLDMLMDT--ELDVTQQDYVRTAQASGKALVSLINEVLDQAKVESGKLELEAVSFNL 512 (993)
Q Consensus 435 ~aKs~Fla~vSHELRTPL~~I~g~lelL~~~--~l~~~q~~~l~~i~~s~~~L~~lIndlLd~skiesg~l~l~~~~~dL 512 (993)
..+.++...+.|++++||++|.+.++++... ..++...+.+..+...++.+...+.+++... .+.++
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~l 94 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIRL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCCH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcCH
Confidence 4457788899999999999999999987643 2223345677777777777777776665332 24577
Q ss_pred HHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchhhhh
Q 001941 513 RAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETE 592 (993)
Q Consensus 513 ~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i~~~ 592 (993)
.+.++.+...+ ...++.+.+.++...+.....++..+.+|+.||+.||+||++.|.|.|.+...+
T Consensus 95 ~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~----------- 159 (218)
T 3ehh_A 95 KDELINIKQIL----EAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLW----------- 159 (218)
T ss_dssp HHHHHHHHHHH----HHTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEET-----------
T ss_pred HHHHHHHHHHH----HhcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEeC-----------
Confidence 88777776655 456888887766544444456788899999999999999998888777664211
Q ss_pred cccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCC
Q 001941 593 LSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHG 672 (993)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~ 672 (993)
..+.|+|+|+|+|||++.. +
T Consensus 160 ------------------------------------------~~~~i~V~D~G~Gi~~~~~------------------~ 179 (218)
T 3ehh_A 160 ------------------------------------------KEVVITVSDDGTFKGEENS------------------F 179 (218)
T ss_dssp ------------------------------------------TEEEEEEEESSCCCC-----------------------
T ss_pred ------------------------------------------CEEEEEEEECCcCCCCCCC------------------C
Confidence 2478999999999999865 5
Q ss_pred CccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 001941 673 GTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (993)
Q Consensus 673 GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~ 711 (993)
|+||||++|+++++.|||+|++.|.+ ||+|++++|+.
T Consensus 180 g~GlGL~~~~~~v~~~gG~i~~~s~~--Gt~~~i~lP~~ 216 (218)
T 3ehh_A 180 SKGHGLLGMRERLEFANGSLHIDTEN--GTKLTMAIPNN 216 (218)
T ss_dssp ---CHHHHHHHHHHHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred CCCCCHHHHHHHHHHcCCEEEEeCCC--CeEEEEEEecC
Confidence 89999999999999999999999998 99999999974
No 16
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.90 E-value=5.4e-23 Score=203.31 Aligned_cols=146 Identities=16% Similarity=0.303 Sum_probs=115.5
Q ss_pred eeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccc
Q 001941 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVD 585 (993)
Q Consensus 506 ~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~ 585 (993)
+..++|+.+++++++..+...+. ++.+.+..+ .+..+.+|+..|.||+.||++||+||++.|.|.|++...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~--~~~i~~~~~--~~~~~~~d~~~l~~il~nLl~NA~~~~~~~~I~i~~~~~~---- 75 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIYP--DLDVSLVPS--PTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSR---- 75 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHST--TCEEEECSC--CCCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEET----
T ss_pred cccccCHHHHHHHHHHHHHHhcc--CCceEEccC--CCceEecCHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC----
Confidence 45689999999999999877654 455555443 3456889999999999999999999999887766653211
Q ss_pred cchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCC
Q 001941 586 SIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGP 665 (993)
Q Consensus 586 ~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~ 665 (993)
..+.|+|+|+|+||+++.++++|+||++.+.
T Consensus 76 -------------------------------------------------~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~ 106 (150)
T 1ysr_A 76 -------------------------------------------------AGVEIAIDDNGSGVPEGERQVVFERFSRGST 106 (150)
T ss_dssp -------------------------------------------------TEEEEEEEESSSCCCGGGHHHHHTSCC----
T ss_pred -------------------------------------------------CEEEEEEEECCCCCCHHHHHHHhcccccCCC
Confidence 1378999999999999999999999998643
Q ss_pred CCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 001941 666 SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (993)
Q Consensus 666 s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~ 711 (993)
+ ..+|+||||+|||++++.|||+|.+.|.+++||+|++++|+.
T Consensus 107 ~---~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 149 (150)
T 1ysr_A 107 A---SHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPGP 149 (150)
T ss_dssp ----------CCCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEECC
T ss_pred C---CCCCCCcCHHHHHHHHHHcCCEEEEeecCCCCEEEEEEEeCC
Confidence 2 356999999999999999999999999999999999999974
No 17
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.89 E-value=9.7e-23 Score=207.55 Aligned_cols=153 Identities=28% Similarity=0.474 Sum_probs=125.5
Q ss_pred eecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccC-CeEEEEEEEeecccccc
Q 001941 509 SFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEK-GHIFVTVYLVEEVVDSI 587 (993)
Q Consensus 509 ~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~-G~I~v~v~~~e~~~~~i 587 (993)
++||.+++++++..+... ..+++.+.+.+++. +..+.+|+..|.+|+.||+.||+||+.. |.|.|.+....
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~-~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~------ 73 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDR-DLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNE------ 73 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSS-CCEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEET------
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCC-CcEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEcc------
Confidence 689999999999999988 88999999888764 3468899999999999999999999954 66666654221
Q ss_pred hhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCC
Q 001941 588 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667 (993)
Q Consensus 588 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~ 667 (993)
+...+.|+|.|+|+||+++.++++|+||++.+.+.
T Consensus 74 ---------------------------------------------~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~ 108 (177)
T 3sl2_A 74 ---------------------------------------------EEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKAR 108 (177)
T ss_dssp ---------------------------------------------TTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC---
T ss_pred ---------------------------------------------CCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCC
Confidence 11247899999999999999999999999987776
Q ss_pred cCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCCC
Q 001941 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNGS 714 (993)
Q Consensus 668 s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~~ 714 (993)
+...+|+||||+||+++++.|||+|.+.|.+++||+|++++|+....
T Consensus 109 ~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~~~~Gt~~~i~lP~~~~~ 155 (177)
T 3sl2_A 109 TRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLPYKEEQ 155 (177)
T ss_dssp ---CCCCCCHHHHHHHHHHHTTCCEEEEEETTTEEEEEEEEEEEC--
T ss_pred CCCCCCCCcCHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEeCCCCc
Confidence 66778999999999999999999999999999999999999997543
No 18
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.89 E-value=4e-22 Score=196.66 Aligned_cols=146 Identities=30% Similarity=0.466 Sum_probs=124.9
Q ss_pred eeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcc-cCCeEEEEEEEeeccc
Q 001941 506 EAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-EKGHIFVTVYLVEEVV 584 (993)
Q Consensus 506 ~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT-~~G~I~v~v~~~e~~~ 584 (993)
+..++|+.+++++++..+...+..+++++.+.+++. +..+.+|+..|.+|+.||++||+||+ +.|.|.|++...
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~~---- 76 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNE-DLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDM---- 76 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCS-SCEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEC----
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCC-CcEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEec----
Confidence 456899999999999999999999999999988754 44688999999999999999999999 456666655321
Q ss_pred ccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccC
Q 001941 585 DSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVG 664 (993)
Q Consensus 585 ~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~ 664 (993)
...+.++|+|+|+||+++.++++|+||++.+
T Consensus 77 -------------------------------------------------~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~ 107 (152)
T 3a0y_A 77 -------------------------------------------------YTKVRVSVWNSGPPIPEELKEKIFSPFFTTK 107 (152)
T ss_dssp -------------------------------------------------SSEEEEEEEEESCCCCGGGTTGGGSTTCCCC
T ss_pred -------------------------------------------------CCEEEEEEEeCCCCcCHHHHHhHhhhhccCC
Confidence 1247899999999999999999999998642
Q ss_pred CCCcCcCCCccchHHHHHHHHH-HcCCEEEEEEeCCCeEEEEEEEEeCC
Q 001941 665 PSISRTHGGTGIGLSISKYLVG-RMKGEIGFVSIPNIGSTFTFTAVFGN 712 (993)
Q Consensus 665 ~s~s~~~~GtGLGLsI~k~LVe-~mgG~I~v~S~~g~GStF~~~lp~~~ 712 (993)
.+|+||||++||++++ .|||++.+.+.++ |++|++++|...
T Consensus 108 ------~~g~GlGL~i~~~~~~~~~gg~~~~~~~~~-g~~~~i~lP~~~ 149 (152)
T 3a0y_A 108 ------TQGTGLGLSICRKIIEDEHGGKIWTENREN-GVVFIFEIPKTP 149 (152)
T ss_dssp --------CCCCSHHHHHHHHHTTTSCEEEEEEETT-EEEEEEEEESCC
T ss_pred ------CCCCCcCHHHHHHHHHHhCCcEEEEecCCC-CEEEEEEeCCCC
Confidence 3589999999999999 9999999999864 999999999854
No 19
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.89 E-value=1.8e-22 Score=202.14 Aligned_cols=149 Identities=23% Similarity=0.322 Sum_probs=123.1
Q ss_pred ceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecc
Q 001941 504 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEV 583 (993)
Q Consensus 504 ~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~ 583 (993)
+++..++|+.+++++++..+.. ++..+.+.+... +..+.+|+..|.||+.||+.||+||+ .|.|.|.+...+
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~----~~~~i~~~~~~~-~~~v~~d~~~l~~il~nll~NAik~~-~~~I~i~~~~~~-- 75 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAESG----YEREIETALYPG-SIEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTEP-- 75 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCS----SSCCEEEECCSS-CCCEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEET--
T ss_pred cccccccCHHHHHHHHHHHhhh----hcceEEEEecCC-CceEEECHHHHHHHHHHHHHHHHhhc-CCeEEEEEEEcC--
Confidence 4556789999999999998653 334444444333 34578999999999999999999999 888877764221
Q ss_pred cccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCcccc
Q 001941 584 VDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQV 663 (993)
Q Consensus 584 ~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~ 663 (993)
..+.|+|+|+|+||+++.++++|+||++.
T Consensus 76 ---------------------------------------------------~~~~i~i~D~G~gi~~~~~~~~f~~f~~~ 104 (161)
T 1bxd_A 76 ---------------------------------------------------NRAWFQVEDDGPGIAPEQRKHLFQPFVRG 104 (161)
T ss_dssp ---------------------------------------------------TEEEEEEEEESSCSCTTGGGCSSCCCCCC
T ss_pred ---------------------------------------------------CEEEEEEEeCCCCCCHHHHHHhCCCceeC
Confidence 14689999999999999999999999987
Q ss_pred CCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeCCC
Q 001941 664 GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFGNG 713 (993)
Q Consensus 664 ~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~~~ 713 (993)
+.+ +..+|+||||+|||++++.|||+|.+.|.+++|++|++++|+...
T Consensus 105 ~~~--~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 152 (161)
T 1bxd_A 105 DSA--RTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVT 152 (161)
T ss_dssp SCC--CCCCCCSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEECCCSC
T ss_pred CCC--CCCCCcccCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEEeCCcc
Confidence 654 334799999999999999999999999999999999999998653
No 20
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.88 E-value=3.7e-22 Score=198.43 Aligned_cols=156 Identities=26% Similarity=0.425 Sum_probs=110.3
Q ss_pred ceeeEeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhccc--CCeEEEEEEEee
Q 001941 504 ELEAVSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTE--KGHIFVTVYLVE 581 (993)
Q Consensus 504 ~l~~~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~--~G~I~v~v~~~e 581 (993)
.++..++++.+++++++..+... ..+++++.+.+++..+. +.+|+..|.||+.||++||+||+. .|.|.|++...+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~-i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~ 79 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLPE-LAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAF 79 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCCC-EEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCCe-eeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeccc
Confidence 35667899999999999999887 88899999988776554 788999999999999999999997 677777665432
Q ss_pred cccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCcc
Q 001941 582 EVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFM 661 (993)
Q Consensus 582 ~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~ 661 (993)
.... ....+...+.|+|+|+|+||+++.++++|+||+
T Consensus 80 ~~~~-------------------------------------------~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~ 116 (160)
T 1r62_A 80 QLTL-------------------------------------------HGERYRLAARIDVEDNGPGIPPHLQDTLFYPMV 116 (160)
T ss_dssp EEEE-------------------------------------------TTEEEEEEEEEEEEEECTTC-------------
T ss_pred cccc-------------------------------------------cccccccEEEEEEEeCCCCCCHHHHHHhhCccc
Confidence 2000 001122357899999999999999999999999
Q ss_pred ccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 001941 662 QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (993)
Q Consensus 662 q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~ 711 (993)
+.+ .+|+||||++|+++++.|||+|.++|.+++ |+|++++|+.
T Consensus 117 ~~~------~~g~GlGL~i~~~~~~~~gG~l~i~s~~~~-~~~~i~lP~~ 159 (160)
T 1r62_A 117 SGR------EGGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPIR 159 (160)
T ss_dssp -------------CHHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEEEEE
T ss_pred cCC------CCCCccCHHHHHHHHHHCCCeEEEEeCCCC-EEEEEEEecc
Confidence 643 368999999999999999999999999886 9999999974
No 21
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.86 E-value=9.9e-22 Score=202.22 Aligned_cols=149 Identities=17% Similarity=0.257 Sum_probs=120.3
Q ss_pred EeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcc-------------cCCeEE
Q 001941 508 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFT-------------EKGHIF 574 (993)
Q Consensus 508 ~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT-------------~~G~I~ 574 (993)
.++++.++++++...+...+..+++.+.+.++.........+..++.||+.||+.||+||+ +.|.|.
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~ 82 (189)
T 1i58_A 3 HMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLI 82 (189)
T ss_dssp SEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEE
T ss_pred eEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCeEE
Confidence 4689999999999999999999998888887654332222334556666999999999995 456666
Q ss_pred EEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhH-
Q 001941 575 VTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQ- 653 (993)
Q Consensus 575 v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~- 653 (993)
|++... ...+.|+|+|+|+||+++.+
T Consensus 83 I~~~~~-----------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~ 109 (189)
T 1i58_A 83 LSARHE-----------------------------------------------------GNNVVIEVEDDGRGIDKEKII 109 (189)
T ss_dssp EEEEEE-----------------------------------------------------TTEEEEEEEECSSCCCHHHHH
T ss_pred EEEEec-----------------------------------------------------CCEEEEEEEeCCCCcCHHHHh
Confidence 665321 12478999999999999976
Q ss_pred -----------------------hhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEe
Q 001941 654 -----------------------SRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVF 710 (993)
Q Consensus 654 -----------------------~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~ 710 (993)
+++|+||++.+.. .+..+|+||||+||+++++.|||+|.+.|.+++||+|++++|+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~-~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~~~Gt~~~i~lPl 188 (189)
T 1i58_A 110 RKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPL 188 (189)
T ss_dssp HHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHHH-HHGGGTCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred hhhhhccchhhhhhcccchhhhHHHhcCCccccccc-CCCCCCCccCHHHHHHHHHHcCCEEEEEeCCCCceEEEEEEeC
Confidence 9999999976432 2334689999999999999999999999999999999999997
No 22
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.77 E-value=1.3e-18 Score=167.75 Aligned_cols=125 Identities=12% Similarity=0.097 Sum_probs=99.1
Q ss_pred ecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchh
Q 001941 510 FNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEV 589 (993)
Q Consensus 510 ~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i 589 (993)
+++.+.++.+... +..+++++.+..+...+.....++..+.+++.||++||+||++.+.|.|++...+
T Consensus 2 v~l~~~l~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~~-------- 69 (128)
T 3ehg_A 2 IRLKDELINIKQI----LEAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQLW-------- 69 (128)
T ss_dssp CCHHHHHHHHHHH----HHHTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEET--------
T ss_pred ccHHHHHHHHHHH----HHHcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEeC--------
Confidence 4556666555544 4567888887766544434446789999999999999999998888777664211
Q ss_pred hhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcC
Q 001941 590 ETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISR 669 (993)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~ 669 (993)
..+.++|+|+|+|||++..
T Consensus 70 ---------------------------------------------~~~~i~V~D~G~Gi~~~~~---------------- 88 (128)
T 3ehg_A 70 ---------------------------------------------KEVVITVSDDGTFKGEENS---------------- 88 (128)
T ss_dssp ---------------------------------------------TEEEEEEEESSCCCSCSSC----------------
T ss_pred ---------------------------------------------CEEEEEEEECCcCcCcccC----------------
Confidence 2478999999999998754
Q ss_pred cCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 001941 670 THGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (993)
Q Consensus 670 ~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~ 711 (993)
+|+||||+++|++++.|||+|.+.|.+ ||+|++++|+.
T Consensus 89 --~g~GlGL~~~~~~~~~~gG~i~~~s~~--Gt~~~i~lP~~ 126 (128)
T 3ehg_A 89 --FSKGHGLLGMRERLEFANGSLHIDTEN--GTKLTMAIPNN 126 (128)
T ss_dssp --CCTTSHHHHHHHHHHHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred --CCCCccHHHHHHHHHHcCCEEEEEeCC--CEEEEEEEecC
Confidence 489999999999999999999999998 99999999974
No 23
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.77 E-value=2.9e-18 Score=164.75 Aligned_cols=125 Identities=22% Similarity=0.369 Sum_probs=103.6
Q ss_pred EeecHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccc
Q 001941 508 VSFNLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSI 587 (993)
Q Consensus 508 ~~~dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i 587 (993)
.++++.+++++++..+ ..+++.+.+.++...+.....|+..|.||+.||++||+||++.|.|.|++..
T Consensus 3 ~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~~~i~i~~~~-------- 70 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAASTLTVRVKV-------- 70 (129)
T ss_dssp --CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEEE--------
T ss_pred ccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEE--------
Confidence 4678999999999877 5667777777766554434456889999999999999999988888776642
Q ss_pred hhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCC
Q 001941 588 EVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI 667 (993)
Q Consensus 588 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~ 667 (993)
+.. +.++|+|+|+||+++.
T Consensus 71 ---------------------------------------------~~~-~~i~v~D~G~gi~~~~--------------- 89 (129)
T 3zxo_A 71 ---------------------------------------------DDD-LCIEVTDNGRGMPDEF--------------- 89 (129)
T ss_dssp ---------------------------------------------SSE-EEEEEEECCCCCTTTT---------------
T ss_pred ---------------------------------------------cCC-EEEEEecCCCCCCccc---------------
Confidence 112 6799999999999764
Q ss_pred cCcCCCccchHHHHHHHHHHcCCEEEEEEeCC-CeEEEEEEEEeC
Q 001941 668 SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN-IGSTFTFTAVFG 711 (993)
Q Consensus 668 s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g-~GStF~~~lp~~ 711 (993)
+||||++||++++.|||++.+.|.++ +|++|++++|+.
T Consensus 90 ------~GlGL~i~~~~~~~~gG~i~~~~~~~~~G~~~~i~lP~~ 128 (129)
T 3zxo_A 90 ------TGSGLTNLRQRAEQAGGEFTLASMPGASGTVLRWSAPLS 128 (129)
T ss_dssp ------CSHHHHHHHHHHHHTTCEEEEEECTTTCCEEEEEEEESC
T ss_pred ------CCcCHHHHHHHHHHcCCEEEEeeCCCCCcEEEEEEecCC
Confidence 69999999999999999999999999 999999999974
No 24
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.72 E-value=5.2e-17 Score=155.04 Aligned_cols=122 Identities=18% Similarity=0.221 Sum_probs=99.0
Q ss_pred cHHHHHHHHHHHHhhhhhccCcEEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchhh
Q 001941 511 NLRAILDDVLSLFSGKSQDKGVELAVYISDRVPETLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVE 590 (993)
Q Consensus 511 dL~~ll~~vl~~~~~~a~~k~I~l~~~i~~~~p~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i~ 590 (993)
++.+.+++++..+ ..+++.+.+.++...+.....++..+.+++.||+.||+||++.|.|.|++...
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~---------- 67 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANATSLAINVSVE---------- 67 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEE----------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEeC----------
Confidence 5677777777766 45667777766655443333458899999999999999999888877766421
Q ss_pred hhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCc
Q 001941 591 TELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRT 670 (993)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~ 670 (993)
.. +.++|+|+|+||+++.
T Consensus 68 -------------------------------------------~~-~~i~v~D~G~gi~~~~------------------ 85 (124)
T 3zxq_A 68 -------------------------------------------DD-VRVEVVDDGVGISGDI------------------ 85 (124)
T ss_dssp -------------------------------------------EE-EEEEEEECCCSSCGGG------------------
T ss_pred -------------------------------------------CC-EEEEEEECCCCCCccc------------------
Confidence 12 6799999999999875
Q ss_pred CCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEEEEEEEeC
Q 001941 671 HGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTFTFTAVFG 711 (993)
Q Consensus 671 ~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF~~~lp~~ 711 (993)
+||||+++|++++.|||++.+.|.+++|++|++++|+.
T Consensus 86 ---~GlGL~~~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 123 (124)
T 3zxq_A 86 ---TESGLRNLRQRADDAGGEFTVENMPTGGTLLRWSAPLR 123 (124)
T ss_dssp ---SHHHHHHHHHHHHHHTCEEEEEECTTSSEEEEEEEECC
T ss_pred ---cccCHHHHHHHHHHhCCEEEEEEcCCCcEEEEEEEecC
Confidence 39999999999999999999999999999999999974
No 25
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.69 E-value=1.1e-16 Score=173.75 Aligned_cols=201 Identities=17% Similarity=0.189 Sum_probs=140.6
Q ss_pred ceEEEeCCchhhHHHHHHHHHH-cCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQR-LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~-lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
.+||||||++..+..+...|+. .|+.+..++. .+++..+ ....+|++++|..++..++.. .++.+++.. .
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~~~-~~~~~~~--~~~~~dlvllD~~mP~~~G~~---~~~~lr~~~---~ 75 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDAFDT-LEGARHC--QGDEYVVALVDLTLPDAPSGE---AVKVLLERG---L 75 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEEESS-TGGGTTC--CTTTEEEEEEESCBTTBTTSH---HHHHHHHTT---C
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEEeCh-HHHHHHh--hcCCCcEEEEeCCCCCCCHHH---HHHHHHhCC---C
Confidence 5899999999999888888865 6888875554 4444333 235799999999987655433 455566531 2
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCCeEEEEeCChH
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNV 897 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ILIVdDn~~ 897 (993)
|.+++.+.... ....... ..|...++.||...+... .+..... .......+||||||++.
T Consensus 76 pvi~lt~~~~~-~~~~~a~-~~Ga~dyl~Kp~~~~~~~-~~~~~~~-----------------~~~~~~~~ILivDD~~~ 135 (259)
T 3luf_A 76 PVVILTADISE-DKREAWL-EAGVLDYVMKDSRHSLQY-AVGLVHR-----------------LYLNQQIEVLVVDDSRT 135 (259)
T ss_dssp CEEEEECC-CH-HHHHHHH-HTTCCEEEECSSHHHHHH-HHHHHHH-----------------HHHHTTCEEEEECSCHH
T ss_pred CEEEEEccCCH-HHHHHHH-HCCCcEEEeCCchhHHHH-HHHhhhh-----------------HhhcCCCcEEEEeCCHH
Confidence 55544433222 2222222 237889999997654221 1111100 00112468999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC---CceEEEEcccc
Q 001941 898 NLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL---LIAILVWKLNL 968 (993)
Q Consensus 898 n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~---~~~~~~~~~~~ 968 (993)
++..+...|+..|+.+..+.||.+|++.+.....||+||+|++||+|||++++++||+.. .+|||+.+-..
T Consensus 136 ~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~~ 209 (259)
T 3luf_A 136 SRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAIIGISVSD 209 (259)
T ss_dssp HHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEEEEEECSS
T ss_pred HHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeEEEEEccC
Confidence 999999999999999999999999999985322489999999999999999999999864 47888765443
No 26
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.65 E-value=2.1e-15 Score=162.89 Aligned_cols=203 Identities=18% Similarity=0.196 Sum_probs=143.0
Q ss_pred cccCCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcC
Q 001941 734 SEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 813 (993)
Q Consensus 734 ~~~~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~ 813 (993)
..++|.+||||||++..+..+..+|+++|++|..+.+ .....++++++|..+.....
T Consensus 7 ~~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~---------~~~~~~~~ii~d~~~~~~~~-------------- 63 (254)
T 2ayx_A 7 EGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG---------QEPTPEDVLITDEVVSKKWQ-------------- 63 (254)
T ss_dssp CTTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS---------CCCCTTCEEEEESSCSCCCC--------------
T ss_pred cccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC---------CCCCcCcEEEEcCCCccccc--------------
Confidence 4578999999999999999999999999999998875 13367899999987643211
Q ss_pred CCCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCCCCCCcccCCCCc-chhhhccCCCeEEEE
Q 001941 814 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNKGNIRNWELPS-MSLRHLLLGRKILIV 892 (993)
Q Consensus 814 ~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~l~~~~ILIV 892 (993)
...++.+....... . ........+.+|.....+...+.+...............+. ........+.+||||
T Consensus 64 ---~~~~i~~~~~~~~~----~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILiv 135 (254)
T 2ayx_A 64 ---GRAVVTFCRRHIGI----P-LEKAPGEWVHSVAAPHELPALLARIYLIEMESDDPANALPSTDKAVSDNDDMMILVV 135 (254)
T ss_dssp ---SSEEEEECSSCCCS----C-CTTSTTEEEECSSCCSHHHHHHHHHHTCCCSCCCCCCSCCCSCCCCCCCCCCEEEEE
T ss_pred ---cceEEEEecccCCC----c-ccccCCceeccccchHHHHHHHHHHhhhccccccccccCCCccccccCCCCCEEEEE
Confidence 01122222111100 0 01122345778888888888887665322111000000000 001112345689999
Q ss_pred eCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEcccc
Q 001941 893 DDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWKLNL 968 (993)
Q Consensus 893 dDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~~~~ 968 (993)
|||+.++..+..+|++.||+|..+.||.+|++.+. .+.||+||+|++||+|||++++++||+. ..+|||+.+-..
T Consensus 136 dd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~~~ 211 (254)
T 2ayx_A 136 DDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS-KNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANA 211 (254)
T ss_dssp ESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHH-HSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEESST
T ss_pred eCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCC
Confidence 99999999999999999999999999999999995 4679999999999999999999999985 468998875443
No 27
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.64 E-value=3.8e-16 Score=184.38 Aligned_cols=117 Identities=21% Similarity=0.290 Sum_probs=95.7
Q ss_pred EEeC-HHHHHHHHHHHHHHHHhcccCC----eEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccC
Q 001941 546 LIGD-PGRFRQIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQ 620 (993)
Q Consensus 546 v~gD-~~rL~QIL~NLL~NAiKfT~~G----~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 620 (993)
+.+| +.+|.||+.||++||++|+..| .|.|++...+.
T Consensus 24 i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~-------------------------------------- 65 (530)
T 2zbk_B 24 GFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD-------------------------------------- 65 (530)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEET--------------------------------------
T ss_pred EEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCC--------------------------------------
Confidence 3445 4999999999999999999775 46665532110
Q ss_pred CCCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCc-CcCCCccchHHHHHHHHHHcCCE-EEEEEeC
Q 001941 621 DGSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS-RTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 698 (993)
Q Consensus 621 ~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s-~~~~GtGLGLsI~k~LVe~mgG~-I~v~S~~ 698 (993)
+...+.|+|+|||+|||++.++++|+||++.+.... +..+|+||||++|+.++++|||+ |.+.|.+
T Consensus 66 ------------~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~ 133 (530)
T 2zbk_B 66 ------------ARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSP 133 (530)
T ss_dssp ------------TTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEEC
T ss_pred ------------cCceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEec
Confidence 112468999999999999999999999988765433 45689999999999999999999 9999999
Q ss_pred CCeE-EEEEEEEeCC
Q 001941 699 NIGS-TFTFTAVFGN 712 (993)
Q Consensus 699 g~GS-tF~~~lp~~~ 712 (993)
+.|+ +|+|++|+..
T Consensus 134 ~~g~~~~~~~Lpl~~ 148 (530)
T 2zbk_B 134 VNSKRIYTFKLKIDI 148 (530)
T ss_dssp TTCSEEEEEEEEEET
T ss_pred CCCeEEEEEEEEecc
Confidence 9887 9999999864
No 28
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.63 E-value=6.5e-16 Score=180.44 Aligned_cols=117 Identities=21% Similarity=0.296 Sum_probs=96.2
Q ss_pred EEeCHHHHHHHHHHHHHHHHhcccCC----eEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCC
Q 001941 546 LIGDPGRFRQIITNLMGNSIKFTEKG----HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 621 (993)
Q Consensus 546 v~gD~~rL~QIL~NLL~NAiKfT~~G----~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 621 (993)
+.+|+.+|.||+.||++||++|+..| .|.|++...+.
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~--------------------------------------- 66 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD--------------------------------------- 66 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEET---------------------------------------
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCC---------------------------------------
Confidence 34688999999999999999999765 46665532110
Q ss_pred CCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCc-CcCCCccchHHHHHHHHHHcCCE-EEEEEeCC
Q 001941 622 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS-RTHGGTGIGLSISKYLVGRMKGE-IGFVSIPN 699 (993)
Q Consensus 622 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s-~~~~GtGLGLsI~k~LVe~mgG~-I~v~S~~g 699 (993)
+...+.|+|+|||+|||++.++++|+||++.+.... +..+|+||||++|+.+++.|||+ |.+.|.++
T Consensus 67 -----------~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~ 135 (471)
T 1mu5_A 67 -----------ARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPV 135 (471)
T ss_dssp -----------TTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECT
T ss_pred -----------cCcEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecC
Confidence 012468999999999999999999999987765433 45689999999999999999999 99999999
Q ss_pred CeE-EEEEEEEeCC
Q 001941 700 IGS-TFTFTAVFGN 712 (993)
Q Consensus 700 ~GS-tF~~~lp~~~ 712 (993)
.|+ +|+|++|+..
T Consensus 136 ~g~~~~~~~Lpl~~ 149 (471)
T 1mu5_A 136 NSKRIYTFKLKIDI 149 (471)
T ss_dssp TCSEEEEEEEEECT
T ss_pred CCceEEEEEEeccc
Confidence 997 9999999864
No 29
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.63 E-value=1.1e-15 Score=150.39 Aligned_cols=103 Identities=19% Similarity=0.300 Sum_probs=82.2
Q ss_pred eCHHHHHHHHHHHHHHHHhcccC----CeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCC
Q 001941 548 GDPGRFRQIITNLMGNSIKFTEK----GHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGS 623 (993)
Q Consensus 548 gD~~rL~QIL~NLL~NAiKfT~~----G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 623 (993)
.|...+.+++.||+.||+||+.. |.|.|++...+
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~------------------------------------------ 72 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIED------------------------------------------ 72 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEET------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeC------------------------------------------
Confidence 47889999999999999999854 77776654211
Q ss_pred CCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEE
Q 001941 624 TSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGST 703 (993)
Q Consensus 624 ~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GSt 703 (993)
..+.|+|+|+|+||+ .++++|+||++.+. ...|+|+||++|+++++ ++.++|.+++||+
T Consensus 73 -----------~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~----~~~~~GlGL~iv~~~~~----~i~~~~~~~~Gt~ 131 (145)
T 1th8_A 73 -----------GVVHLTVRDEGVGIP--DIEEARQPLFTTKP----ELERSGMGFTIMENFMD----EVIVESEVNKGTT 131 (145)
T ss_dssp -----------TEEEEEEEECSSCCS--CHHHHTCCC-----------CCCSCHHHHHHHHSS----EEEEEEETTTEEE
T ss_pred -----------CEEEEEEEECCCCcC--hHHHhhcccccCCC----CCCCCcchHHHHHHHHh----eEEEEeCCCCCEE
Confidence 147899999999999 78899999997543 34689999999999988 9999999999999
Q ss_pred EEEEEEeCCC
Q 001941 704 FTFTAVFGNG 713 (993)
Q Consensus 704 F~~~lp~~~~ 713 (993)
|++++|+...
T Consensus 132 v~~~lp~~~~ 141 (145)
T 1th8_A 132 VYLKKHGIHH 141 (145)
T ss_dssp EEEEECCC--
T ss_pred EEEEEecccc
Confidence 9999998653
No 30
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.53 E-value=1.4e-14 Score=141.25 Aligned_cols=82 Identities=26% Similarity=0.340 Sum_probs=73.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCE-EEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAI 961 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~-v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~ 961 (993)
+.||||||||+.++.++..+|++.||. +.+|.||.+|++.+. .+.||+||+|++||+|||+|++++||+. ..+||
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~-~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipv 90 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK-KGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPV 90 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHH-hCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeE
Confidence 358999999999999999999999996 678999999999995 5789999999999999999999999964 67999
Q ss_pred EEEcccc
Q 001941 962 LVWKLNL 968 (993)
Q Consensus 962 ~~~~~~~ 968 (993)
|+.+-..
T Consensus 91 I~lTa~~ 97 (134)
T 3to5_A 91 LMITAEA 97 (134)
T ss_dssp EEEESSC
T ss_pred EEEECCC
Confidence 9885443
No 31
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.48 E-value=7.1e-14 Score=145.91 Aligned_cols=165 Identities=19% Similarity=0.200 Sum_probs=88.0
Q ss_pred HHHcCCEEEEEEeCCCeEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceEEEeCCchhhHHHHHHHHHHcCC-
Q 001941 685 VGRMKGEIGFVSIPNIGSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGI- 763 (993)
Q Consensus 685 Ve~mgG~I~v~S~~g~GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rvLvvdd~~~~~~v~~~~L~~lG~- 763 (993)
+.+|||.|.++|++|+||+|++++|+......... ..........+.+||||||++..+..+...|+++|+
T Consensus 16 ~~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~--------~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~ 87 (206)
T 3mm4_A 16 RGSHMASTDSESETRVKSVRTGRKPIGNPEDEQET--------SKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVS 87 (206)
T ss_dssp -----------------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCS
T ss_pred ccccCCceeeeccCCCcceeeeccCCCCCcccccc--------cCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999998654322111 111122345688999999999999999999999999
Q ss_pred EEEEecCHHHHHHHHhcC-----------CCcccEEEEeccccccCccchHHHHHHHHhcC---CCCCceEEEEeccCCc
Q 001941 764 QVEVVSDQLQCLSQIASG-----------SKIINMILVEQEVWEKDTSVSTLFVNNLRKLG---CGFQSKLFLLANSISS 829 (993)
Q Consensus 764 ~v~~~~~~~~al~~l~~~-----------~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~lla~~~~~ 829 (993)
.|..+.++.+|++.+... ...+|++++|..++..++ ..+++.+++.. ....|.+++.+.....
T Consensus 88 ~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G---~el~~~lr~~~~~~~~~~piI~ls~~~~~~ 164 (206)
T 3mm4_A 88 EVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDG---YEATREIRKVEKSYGVRTPIIAVSGHDPGS 164 (206)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCH---HHHHHHHHHHHHTTTCCCCEEEEESSCCCH
T ss_pred eeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCH---HHHHHHHHhhhhhcCCCCcEEEEECCCCcH
Confidence 999999999999998763 357999999998865432 34556666542 1122444443322121
Q ss_pred ccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 830 SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 830 ~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
....... ..|...++.||+. .|...+.+++.
T Consensus 165 ~~~~~~~-~~Ga~~~l~KP~~--~L~~~i~~~l~ 195 (206)
T 3mm4_A 165 EEARETI-QAGMDAFLDKSLN--QLANVIREIES 195 (206)
T ss_dssp HHHHHHH-HHTCSEEEETTCT--THHHHHHHHC-
T ss_pred HHHHHHH-hCCCCEEEcCcHH--HHHHHHHHHHh
Confidence 2221121 2267889999998 88888888774
No 32
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.46 E-value=9.6e-15 Score=140.24 Aligned_cols=79 Identities=16% Similarity=0.258 Sum_probs=72.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVW 964 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~ 964 (993)
+.||||||||+.++..+..+|++.||+|. +|.||++|++.+. .++||+||+|++||+|||++++++||+. ++|||+.
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~-~~~~DlvllDi~mP~~~G~el~~~lr~~-~ipvI~l 85 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIAR-KGQFDIAIIDVNLDGEPSYPVADILAER-NVPFIFA 85 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHH-HCCSSEEEECSSSSSCCSHHHHHHHHHT-CCSSCCB
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-hCCCCEEEEecCCCCCCHHHHHHHHHcC-CCCEEEE
Confidence 35899999999999999999999999986 7999999999995 5789999999999999999999999984 7899877
Q ss_pred cc
Q 001941 965 KL 966 (993)
Q Consensus 965 ~~ 966 (993)
+-
T Consensus 86 Ta 87 (123)
T 2lpm_A 86 TG 87 (123)
T ss_dssp CT
T ss_pred ec
Confidence 43
No 33
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.43 E-value=2.8e-12 Score=149.94 Aligned_cols=216 Identities=18% Similarity=0.164 Sum_probs=150.7
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC-
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ- 817 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~- 817 (993)
.+||||||++..+..+...|+..|+.|..+.++.+|++.+.. ..+|++++|..|+..++ ...++.+++......
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~--~~~dlvllD~~mp~~~G---~~~~~~l~~~~~~~~~ 76 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR--DLPDIILLDVMMPGMDG---FTVCRKLKDDPTTRHI 76 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCH---HHHHHHHHHSTTTTTS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCCH---HHHHHHHhcCcccCCC
Confidence 479999999999999999999999999999999999998865 35899999998865432 345677776533223
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCCCC--------CCcccCC-CCcchhhhccCCCe
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVGNK--------GNIRNWE-LPSMSLRHLLLGRK 888 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~~~--------~~~~~~~-~~~~~~~~~l~~~~ 888 (993)
|.+++.+.. ......... ..|...++.||+....+...+..++..... ....... ...........+.+
T Consensus 77 pii~lt~~~-~~~~~~~a~-~~Ga~~~l~KP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (459)
T 1w25_A 77 PVVLITALD-GRGDRIQGL-ESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQREASGRRMGVIAGAAARLDGLGGR 154 (459)
T ss_dssp CEEEEECSS-CHHHHHHHH-HHTCCEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTTTCCCCCCSSCSCE
T ss_pred CEEEEECCC-CHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHHHHhhhhHhhhhcccccchhhhhhhhhhhcCCCCe
Confidence 444443322 222111121 226789999999999998888766531100 0000000 00000001123458
Q ss_pred EEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEEEE
Q 001941 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAILVW 964 (993)
Q Consensus 889 ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~~~ 964 (993)
|++|||+..+...+...|.. .+.+....++.++.... ...||+++||++||+|||+++++.||.. ...|++.-
T Consensus 155 ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~~--~~~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pii~l 230 (459)
T 1w25_A 155 VLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKISA--GGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAM 230 (459)
T ss_dssp EEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHHHH--HSSCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCEEEE
T ss_pred EEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhhhc--cCCCCEEEEecCCCCCcHHHHHHHHHhCccccCCcEEEE
Confidence 99999999999888888875 46778888888886432 3569999999999999999999999964 46777665
No 34
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.36 E-value=9.1e-13 Score=157.62 Aligned_cols=115 Identities=19% Similarity=0.295 Sum_probs=87.0
Q ss_pred EEeCHHHHHHHHHHHHHHHHhcccC-C---eEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCC
Q 001941 546 LIGDPGRFRQIITNLMGNSIKFTEK-G---HIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQD 621 (993)
Q Consensus 546 v~gD~~rL~QIL~NLL~NAiKfT~~-G---~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 621 (993)
+.+|+.+|.|++.||++||++|+.. | .|.|++...
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~----------------------------------------- 69 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERT----------------------------------------- 69 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEE-----------------------------------------
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEC-----------------------------------------
Confidence 4579999999999999999999974 4 455543211
Q ss_pred CCCCCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCC--CcCcCCCccchHHHHHHHHHHcCCE-EEEEEeC
Q 001941 622 GSTSPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPS--ISRTHGGTGIGLSISKYLVGRMKGE-IGFVSIP 698 (993)
Q Consensus 622 ~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s--~s~~~~GtGLGLsI~k~LVe~mgG~-I~v~S~~ 698 (993)
+...+.|+|+|+|+|||++.++++|++|+..+.- .....+|+|+||++|+.+++.|||+ |.++|.+
T Consensus 70 -----------~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~ 138 (621)
T 2q2e_B 70 -----------GPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKT 138 (621)
T ss_dssp -----------TTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEEC
T ss_pred -----------CCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCceechhhhhHHHHHhCCCceeEEeec
Confidence 0123679999999999999999999887544321 1123479999999999999999999 8999988
Q ss_pred CC---eEEEEEEEEeCC
Q 001941 699 NI---GSTFTFTAVFGN 712 (993)
Q Consensus 699 g~---GStF~~~lp~~~ 712 (993)
+. |++|+|.+|...
T Consensus 139 ~gg~~g~~~~~~lp~~~ 155 (621)
T 2q2e_B 139 SPTAPAHYYELMINTST 155 (621)
T ss_dssp SSSSCEEEEECCCCSSS
T ss_pred cCCccceEEEEecchhc
Confidence 74 666666555543
No 35
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.28 E-value=3.1e-12 Score=140.70 Aligned_cols=81 Identities=16% Similarity=0.188 Sum_probs=75.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCC-CCCHHHHHHHHhccCCceEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGYEMLPCFESFLLIAILV 963 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP-~mdG~e~~~~Ir~~~~~~~~~ 963 (993)
+.+|||||||+.++..+..+|+..||.|. +|.||.+|++.+. ...||+||||++|| +|||++++++||+...+|||+
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~-~~~~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI~ 238 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVT-RRTPGLVLADIQLADGSSGIDAVKDILGRMDVPVIF 238 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HCCCSEEEEESCCTTSCCTTTTTHHHHHHTTCCEEE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHH-hCCCCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 45899999999999999999999999999 9999999999996 46799999999999 899999999999999999999
Q ss_pred Eccc
Q 001941 964 WKLN 967 (993)
Q Consensus 964 ~~~~ 967 (993)
.+-.
T Consensus 239 lT~~ 242 (286)
T 3n0r_A 239 ITAF 242 (286)
T ss_dssp EESC
T ss_pred EeCC
Confidence 8554
No 36
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.26 E-value=2.3e-11 Score=115.17 Aligned_cols=81 Identities=32% Similarity=0.433 Sum_probs=73.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~~ 963 (993)
++||||||++..+..+...|++.||++..+.|+.+|++.+. .+.||+||+|++||+|||++++++||+. ..+|||+
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~-~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~ 81 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS-EFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIV 81 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHT-TBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH-hcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEE
Confidence 58999999999999999999999999999999999999996 5789999999999999999999999975 5789988
Q ss_pred Ecccc
Q 001941 964 WKLNL 968 (993)
Q Consensus 964 ~~~~~ 968 (993)
.+-..
T Consensus 82 ~s~~~ 86 (122)
T 3gl9_A 82 LTAKG 86 (122)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 75433
No 37
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.24 E-value=2.4e-11 Score=114.60 Aligned_cols=79 Identities=28% Similarity=0.430 Sum_probs=73.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEcc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWKL 966 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~~ 966 (993)
++||||||++..+..+...|++.||++.++.++.+|++.+. ...||+||+|+.||++||++++++||+....|+|+.+-
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~ 81 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE-ELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTA 81 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-TTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHh-hCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEEC
Confidence 58999999999999999999999999999999999999995 57899999999999999999999999998999988743
No 38
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.16 E-value=1.2e-10 Score=112.30 Aligned_cols=84 Identities=24% Similarity=0.343 Sum_probs=74.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAIL 962 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~ 962 (993)
..+||||||++..+..+..+|+..||+|..+.++.+|++.+. .+.||+||+|+.||++||++++++||+. ..+|||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii 82 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIY-KNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPIL 82 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEE
Confidence 358999999999999999999999999999999999999985 4679999999999999999999999974 578998
Q ss_pred EEcccccc
Q 001941 963 VWKLNLKI 970 (993)
Q Consensus 963 ~~~~~~~~ 970 (993)
+.+-....
T Consensus 83 ~~t~~~~~ 90 (136)
T 3t6k_A 83 MLTAQGDI 90 (136)
T ss_dssp EEECTTCH
T ss_pred EEecCCCH
Confidence 87544443
No 39
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.13 E-value=2.2e-10 Score=110.05 Aligned_cols=84 Identities=26% Similarity=0.320 Sum_probs=71.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCC-EEEEEcCHHHHHHHhCC----CCCCcEEEEcCCCCCCCHHHHHHHHhc--cCCc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMP----PHQFDACFMDIQMPEMDGYEMLPCFES--FLLI 959 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~-~v~~a~~g~eAl~~~~~----~~~~DlIlmDi~MP~mdG~e~~~~Ir~--~~~~ 959 (993)
.+||||||++.++..+..+|+..|+ .+..+.+|.+|++.+.. ...||+||+|++||+|||++++++||+ ....
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~ 82 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTS 82 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCCS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCCC
Confidence 4799999999999999999999997 48899999999998842 156999999999999999999999996 3467
Q ss_pred eEEEEcccccc
Q 001941 960 AILVWKLNLKI 970 (993)
Q Consensus 960 ~~~~~~~~~~~ 970 (993)
|||+.+-....
T Consensus 83 ~ii~lt~~~~~ 93 (133)
T 2r25_B 83 PIVALTAFADD 93 (133)
T ss_dssp CEEEEESCCSH
T ss_pred CEEEEECCCCH
Confidence 89887544443
No 40
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.11 E-value=1.2e-10 Score=118.69 Aligned_cols=83 Identities=23% Similarity=0.265 Sum_probs=75.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhc-cCCceEEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFES-FLLIAILVW 964 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~-~~~~~~~~~ 964 (993)
+.+|||||||+..+..+..+|+..||.|.++.++.+|++.+. .+.||+||+|+.||+|||++++++||+ ...+|||+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~l 85 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAG-AEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVL 85 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHT-TSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-hCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEE
Confidence 468999999999999999999999999999999999999995 578999999999999999999999997 456899887
Q ss_pred ccccc
Q 001941 965 KLNLK 969 (993)
Q Consensus 965 ~~~~~ 969 (993)
+-...
T Consensus 86 t~~~~ 90 (184)
T 3rqi_A 86 TGYAS 90 (184)
T ss_dssp ESSCC
T ss_pred eCCCC
Confidence 54443
No 41
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.11 E-value=1.3e-10 Score=121.04 Aligned_cols=84 Identities=39% Similarity=0.574 Sum_probs=74.7
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHhCCC-EEEEEcCHHHHHHHhCCC------------CCCcEEEEcCCCCCCCHHHHH
Q 001941 884 LLGRKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPP------------HQFDACFMDIQMPEMDGYEML 950 (993)
Q Consensus 884 l~~~~ILIVdDn~~n~~vl~~~L~~~g~-~v~~a~~g~eAl~~~~~~------------~~~DlIlmDi~MP~mdG~e~~ 950 (993)
..+.+|||||||+.++..+..+|++.|| .|..+.++.+|++.+... ..||+||+|+.||+|||++++
T Consensus 59 ~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~ 138 (206)
T 3mm4_A 59 LRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEAT 138 (206)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHH
Confidence 3467999999999999999999999999 999999999999998521 379999999999999999999
Q ss_pred HHHhcc-----CCceEEEEccc
Q 001941 951 PCFESF-----LLIAILVWKLN 967 (993)
Q Consensus 951 ~~Ir~~-----~~~~~~~~~~~ 967 (993)
++||+. ..+|||+.+-.
T Consensus 139 ~~lr~~~~~~~~~~piI~ls~~ 160 (206)
T 3mm4_A 139 REIRKVEKSYGVRTPIIAVSGH 160 (206)
T ss_dssp HHHHHHHHTTTCCCCEEEEESS
T ss_pred HHHHhhhhhcCCCCcEEEEECC
Confidence 999985 78899887543
No 42
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.09 E-value=5.7e-10 Score=109.97 Aligned_cols=83 Identities=25% Similarity=0.366 Sum_probs=75.2
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAIL 962 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~ 962 (993)
+.+|||||||+..+..+..+|++.||.+.++.++.+|++.+. ...||+||+|+.||++||+++++.||+. ..+|||
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii 85 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLS-LTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVI 85 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHT-TCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEE
Confidence 468999999999999999999999999999999999999996 5789999999999999999999999986 678998
Q ss_pred EEccccc
Q 001941 963 VWKLNLK 969 (993)
Q Consensus 963 ~~~~~~~ 969 (993)
+..-...
T Consensus 86 ~~s~~~~ 92 (154)
T 3gt7_A 86 LLTILSD 92 (154)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 8754333
No 43
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.09 E-value=5.6e-10 Score=107.93 Aligned_cols=85 Identities=27% Similarity=0.356 Sum_probs=75.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCC-CCHHHHHHHHhccCCceEEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-MDGYEMLPCFESFLLIAILVW 964 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~-mdG~e~~~~Ir~~~~~~~~~~ 964 (993)
+++|||||||+..+..+..+|++.||++..+.++.+|++.+.....||+||+|+.||+ ++|+++++.||+...+|||+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~l 84 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFL 84 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 4689999999999999999999999999999999999999853367999999999995 999999999999999999888
Q ss_pred cccccc
Q 001941 965 KLNLKI 970 (993)
Q Consensus 965 ~~~~~~ 970 (993)
.-....
T Consensus 85 s~~~~~ 90 (140)
T 3h5i_A 85 TAHTEP 90 (140)
T ss_dssp ESSSSC
T ss_pred ECCCCH
Confidence 554443
No 44
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.09 E-value=2.5e-10 Score=108.86 Aligned_cols=83 Identities=28% Similarity=0.342 Sum_probs=72.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCE-EEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAI 961 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~-v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~ 961 (993)
+.+||||||++..+..+..+|++.||. +..+.++.+|++.+.....||+||+|++||+|||++++++||+. ..+||
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pi 84 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPI 84 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeE
Confidence 358999999999999999999999995 88999999999987433469999999999999999999999974 47899
Q ss_pred EEEcccc
Q 001941 962 LVWKLNL 968 (993)
Q Consensus 962 ~~~~~~~ 968 (993)
|+.+-..
T Consensus 85 i~~s~~~ 91 (129)
T 3h1g_A 85 IMITAEG 91 (129)
T ss_dssp EEEESCC
T ss_pred EEEeCCC
Confidence 8875433
No 45
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.08 E-value=3.9e-10 Score=109.85 Aligned_cols=83 Identities=24% Similarity=0.500 Sum_probs=71.2
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-----CCce
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-----LLIA 960 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-----~~~~ 960 (993)
+.+||||||++..+..+..+|++.||.+.++.++++|++.+. .+.||+||+|+.||+|||++++++||+. ..+|
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~p 92 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA-EEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTP 92 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCC
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCe
Confidence 468999999999999999999999999999999999999985 4679999999999999999999999953 4578
Q ss_pred EEEEccccc
Q 001941 961 ILVWKLNLK 969 (993)
Q Consensus 961 ~~~~~~~~~ 969 (993)
||+..-...
T Consensus 93 ii~~s~~~~ 101 (143)
T 3m6m_D 93 VVVLSADVT 101 (143)
T ss_dssp EEEEESCCC
T ss_pred EEEEeCCCC
Confidence 888754443
No 46
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.05 E-value=4.1e-10 Score=106.61 Aligned_cols=79 Identities=19% Similarity=0.314 Sum_probs=72.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~~ 963 (993)
.+|||||||+..+..+..+|++.||++..+.++.+|++.+. ...||+||+|+.||+++|++++++||+. ..+|||+
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 82 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMS-TRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVA 82 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHH-HSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEE
Confidence 58999999999999999999999999999999999999995 4679999999999999999999999985 6788887
Q ss_pred Ecc
Q 001941 964 WKL 966 (993)
Q Consensus 964 ~~~ 966 (993)
..-
T Consensus 83 ~s~ 85 (127)
T 3i42_A 83 VSG 85 (127)
T ss_dssp EEC
T ss_pred EEC
Confidence 743
No 47
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.04 E-value=7.3e-10 Score=106.72 Aligned_cols=79 Identities=22% Similarity=0.306 Sum_probs=73.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhc---cCCceEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFES---FLLIAIL 962 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~---~~~~~~~ 962 (993)
.++|||||||+..+..+..+|++.||++..+.++.+|++.+. ...||+||+|+.||++||++++++||+ ...+|||
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii 84 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVA-RRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIV 84 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH-HSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 468999999999999999999999999999999999999995 467999999999999999999999997 5688998
Q ss_pred EEc
Q 001941 963 VWK 965 (993)
Q Consensus 963 ~~~ 965 (993)
+..
T Consensus 85 ~~s 87 (140)
T 3grc_A 85 VVS 87 (140)
T ss_dssp EEC
T ss_pred EEe
Confidence 883
No 48
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.03 E-value=5.2e-10 Score=105.10 Aligned_cols=81 Identities=27% Similarity=0.384 Sum_probs=71.5
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~~ 963 (993)
++||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.||++||++++++||+. ..+|||+
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 80 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAR-ENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVA 80 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-HHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEE
Confidence 47999999999999999999999999999999999999885 4679999999999999999999999984 5789988
Q ss_pred Ecccc
Q 001941 964 WKLNL 968 (993)
Q Consensus 964 ~~~~~ 968 (993)
..-..
T Consensus 81 ~s~~~ 85 (124)
T 1mb3_A 81 VTAFA 85 (124)
T ss_dssp EC---
T ss_pred EECCC
Confidence 74433
No 49
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.03 E-value=1.1e-09 Score=104.80 Aligned_cols=88 Identities=20% Similarity=0.259 Sum_probs=76.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc--CCceEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF--LLIAILV 963 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~--~~~~~~~ 963 (993)
..+|||||||+..+..+..+|++.||++..+.++.+|+..+.....||+||+|+.||+++|++++++||+. ..+|||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~ 86 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIV 86 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEE
Confidence 46899999999999999999999999999999999999988543349999999999999999999999986 6789988
Q ss_pred Ecccccchhh
Q 001941 964 WKLNLKISWK 973 (993)
Q Consensus 964 ~~~~~~~~~~ 973 (993)
..-.......
T Consensus 87 ~s~~~~~~~~ 96 (136)
T 3hdv_A 87 VSGDTDVEEA 96 (136)
T ss_dssp EESSCCHHHH
T ss_pred EeCCCChHHH
Confidence 8555444333
No 50
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.02 E-value=6.1e-10 Score=103.84 Aligned_cols=81 Identities=28% Similarity=0.398 Sum_probs=73.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEcc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWKL 966 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~~ 966 (993)
++||||||++..+..+...|+..||++..+.++.+|++.+. ...||+||+|+.||+++|++++++||+...+|+|+..-
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~ 80 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFE-AEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSA 80 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEES
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHH-hCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEec
Confidence 37999999999999999999999999999999999999885 46799999999999999999999999988899988744
Q ss_pred cc
Q 001941 967 NL 968 (993)
Q Consensus 967 ~~ 968 (993)
..
T Consensus 81 ~~ 82 (120)
T 2a9o_A 81 KD 82 (120)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 51
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.01 E-value=1e-09 Score=102.96 Aligned_cols=81 Identities=19% Similarity=0.302 Sum_probs=73.5
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEcc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWKL 966 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~~ 966 (993)
.+||||||++..+..+...|+..||.+..+.++.+|++.+. .+.||+||+|+.||+++|+++++.||+...+|+|+..-
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~ 81 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ-NQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTG 81 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEES
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHh-cCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEEC
Confidence 47999999999999999999999999999999999999885 46799999999999999999999999988889988744
Q ss_pred cc
Q 001941 967 NL 968 (993)
Q Consensus 967 ~~ 968 (993)
..
T Consensus 82 ~~ 83 (122)
T 1zgz_A 82 RS 83 (122)
T ss_dssp SC
T ss_pred CC
Confidence 33
No 52
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.01 E-value=1e-09 Score=103.09 Aligned_cols=80 Identities=20% Similarity=0.271 Sum_probs=73.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEcc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWKL 966 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~~ 966 (993)
.+||||||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||++||++++++||+....|+|+..-
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~ 82 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-EYDINLVIMDINLPGKNGLLLARELREQANVALMFLTG 82 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEES
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEEC
Confidence 48999999999999999999999999999999999999985 46799999999999999999999999888889887743
Q ss_pred c
Q 001941 967 N 967 (993)
Q Consensus 967 ~ 967 (993)
.
T Consensus 83 ~ 83 (123)
T 1xhf_A 83 R 83 (123)
T ss_dssp C
T ss_pred C
Confidence 3
No 53
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.01 E-value=1.5e-09 Score=102.59 Aligned_cols=83 Identities=23% Similarity=0.213 Sum_probs=73.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVW 964 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~ 964 (993)
+.+||||||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||++||++++++||+. ..+|||+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAP-DVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVI 81 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGG-GCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 358999999999999999999999999999999999999985 4679999999999999999999999986 46788887
Q ss_pred ccccc
Q 001941 965 KLNLK 969 (993)
Q Consensus 965 ~~~~~ 969 (993)
.-...
T Consensus 82 s~~~~ 86 (126)
T 1dbw_A 82 TGHGD 86 (126)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 44333
No 54
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.01 E-value=1.7e-09 Score=102.75 Aligned_cols=85 Identities=29% Similarity=0.390 Sum_probs=70.4
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEE
Q 001941 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILV 963 (993)
Q Consensus 885 ~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~ 963 (993)
.+++||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.. .+|||+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG-GFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLV 84 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHT-TCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 3579999999999999999999999999999999999999995 57899999999999999999999999764 578888
Q ss_pred Ecccccc
Q 001941 964 WKLNLKI 970 (993)
Q Consensus 964 ~~~~~~~ 970 (993)
.+-....
T Consensus 85 ~t~~~~~ 91 (130)
T 3eod_A 85 ISATENM 91 (130)
T ss_dssp EECCCCH
T ss_pred EEcCCCH
Confidence 7544433
No 55
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.01 E-value=1.3e-09 Score=102.56 Aligned_cols=84 Identities=23% Similarity=0.349 Sum_probs=74.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
.+||||||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||+++|++++++||+. ..+|||+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVT-KERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMT 82 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh-ccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEE
Confidence 48999999999999999999999999999999999999985 4679999999999999999999999984 578888775
Q ss_pred ccccch
Q 001941 966 LNLKIS 971 (993)
Q Consensus 966 ~~~~~~ 971 (993)
-.....
T Consensus 83 ~~~~~~ 88 (124)
T 1srr_A 83 AYGELD 88 (124)
T ss_dssp SSCCHH
T ss_pred ccCchH
Confidence 444433
No 56
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=98.99 E-value=1.3e-09 Score=105.11 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=75.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHh-CCCEEEEEcCHHHHHHHhCCC-CCCcEEEEcCCCC-CCCHHHHHHHHhc---cCCc
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKR-YGAAVVCVERGKKATELLMPP-HQFDACFMDIQMP-EMDGYEMLPCFES---FLLI 959 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~-~g~~v~~a~~g~eAl~~~~~~-~~~DlIlmDi~MP-~mdG~e~~~~Ir~---~~~~ 959 (993)
..+|||||||+..+..+..+|+. .||++..+.++.+|++.+. . ..||+||+|+.|| ++||++++++||+ ...+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~-~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~ 82 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFK-DLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANT 82 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTT-TCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHh-cCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCC
Confidence 35899999999999999999999 9999999999999999995 5 7899999999999 9999999999997 6788
Q ss_pred eEEEEccccc
Q 001941 960 AILVWKLNLK 969 (993)
Q Consensus 960 ~~~~~~~~~~ 969 (993)
|||+.+-...
T Consensus 83 ~ii~ls~~~~ 92 (140)
T 3lua_A 83 PVIIATKSDN 92 (140)
T ss_dssp CEEEEESCCC
T ss_pred CEEEEeCCCC
Confidence 9988754443
No 57
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=98.99 E-value=1.2e-09 Score=105.25 Aligned_cols=79 Identities=29% Similarity=0.356 Sum_probs=71.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~~ 963 (993)
.+||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.||++||+++++.||+. ..+|||+
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 82 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALN-ATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLM 82 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEE
Confidence 48999999999999999999999999999999999999985 4679999999999999999999999985 4688887
Q ss_pred Ecc
Q 001941 964 WKL 966 (993)
Q Consensus 964 ~~~ 966 (993)
.+-
T Consensus 83 ls~ 85 (138)
T 3c3m_A 83 LTA 85 (138)
T ss_dssp EES
T ss_pred EEC
Confidence 743
No 58
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=98.99 E-value=1.6e-09 Score=106.13 Aligned_cols=84 Identities=14% Similarity=0.360 Sum_probs=73.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCC--EEEEEcCHHHHHHHhC--------CCCCCcEEEEcCCCCCCCHHHHHHHHhc
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLM--------PPHQFDACFMDIQMPEMDGYEMLPCFES 955 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~--~v~~a~~g~eAl~~~~--------~~~~~DlIlmDi~MP~mdG~e~~~~Ir~ 955 (993)
..+|||||||+..+..+..+|++.|+ .+..+.++.+|++.+. ....||+||+|+.||+++|++++++||+
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~ 83 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKE 83 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 35899999999999999999999999 8999999999999983 2467999999999999999999999998
Q ss_pred ---cCCceEEEEccccc
Q 001941 956 ---FLLIAILVWKLNLK 969 (993)
Q Consensus 956 ---~~~~~~~~~~~~~~ 969 (993)
...+|||+.+-...
T Consensus 84 ~~~~~~~pii~~t~~~~ 100 (152)
T 3heb_A 84 NPHTRRSPVVILTTTDD 100 (152)
T ss_dssp STTTTTSCEEEEESCCC
T ss_pred cccccCCCEEEEecCCC
Confidence 46789988754443
No 59
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=98.98 E-value=5.5e-10 Score=108.52 Aligned_cols=81 Identities=27% Similarity=0.305 Sum_probs=71.9
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHhC-CCEEE-EEcCHHHHHHHhCCCC-CCcEEEEcCCCCCCCHHHHHHHHhccCCceE
Q 001941 885 LGRKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPH-QFDACFMDIQMPEMDGYEMLPCFESFLLIAI 961 (993)
Q Consensus 885 ~~~~ILIVdDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eAl~~~~~~~-~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~ 961 (993)
.+++||||||++..+..+..+|++. ||.++ .+.++.+|++.+. .. .||+||+|+.||++||++++++||+....|+
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~i 90 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLA-AQPNVDLILLDIEMPVMDGMEFLRHAKLKTRAKI 90 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHH-HCTTCCEEEECTTSCCCTTCHHHHHHHHHCCCEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHh-cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCe
Confidence 3568999999999999999999988 88865 8999999999885 35 7999999999999999999999999888888
Q ss_pred EEEcc
Q 001941 962 LVWKL 966 (993)
Q Consensus 962 ~~~~~ 966 (993)
++...
T Consensus 91 iil~~ 95 (145)
T 3kyj_B 91 CMLSS 95 (145)
T ss_dssp C-CBS
T ss_pred EEEEE
Confidence 77754
No 60
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=98.98 E-value=2e-09 Score=104.04 Aligned_cols=82 Identities=18% Similarity=0.281 Sum_probs=73.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCC--EEEEEcCHHHHHHHhCCC-----CCCcEEEEcCCCCCCCHHHHHHHHhc---
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMPP-----HQFDACFMDIQMPEMDGYEMLPCFES--- 955 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~--~v~~a~~g~eAl~~~~~~-----~~~DlIlmDi~MP~mdG~e~~~~Ir~--- 955 (993)
..+||||||++..+..+..+|+..|+ .+..+.++.+|++.+. . ..||+||+|+.||++||++++++||+
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~-~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLN-ELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH-HHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHH-HhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 35899999999999999999999999 9999999999999984 4 67999999999999999999999998
Q ss_pred --cCCceEEEEcccc
Q 001941 956 --FLLIAILVWKLNL 968 (993)
Q Consensus 956 --~~~~~~~~~~~~~ 968 (993)
....|+|+..-..
T Consensus 88 ~~~~~~~ii~~t~~~ 102 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSL 102 (146)
T ss_dssp GGTTTCEEEEECSSC
T ss_pred hccCCCeEEEEeCCC
Confidence 4688888874333
No 61
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=98.98 E-value=1.4e-09 Score=104.81 Aligned_cols=81 Identities=19% Similarity=0.278 Sum_probs=73.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEcc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWKL 966 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~~ 966 (993)
.+||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.||++||++++++||+...+|||+..-
T Consensus 5 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~ 83 (136)
T 2qzj_A 5 TKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIF-SNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTY 83 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEES
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEc
Confidence 58999999999999999999999999999999999999985 46799999999999999999999999887889988744
Q ss_pred cc
Q 001941 967 NL 968 (993)
Q Consensus 967 ~~ 968 (993)
..
T Consensus 84 ~~ 85 (136)
T 2qzj_A 84 IN 85 (136)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 62
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=98.98 E-value=1.9e-09 Score=105.76 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=74.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVW 964 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~ 964 (993)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.||+++|++++++||+. ..+|||+.
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 92 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLA-SREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILL 92 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHH-cCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEE
Confidence 468999999999999999999999999999999999999995 4679999999999999999999999985 56888887
Q ss_pred ccccc
Q 001941 965 KLNLK 969 (993)
Q Consensus 965 ~~~~~ 969 (993)
.-...
T Consensus 93 s~~~~ 97 (153)
T 3hv2_A 93 TGDPD 97 (153)
T ss_dssp CCCCC
T ss_pred ECCCC
Confidence 44333
No 63
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=98.97 E-value=3.8e-09 Score=103.27 Aligned_cols=83 Identities=20% Similarity=0.350 Sum_probs=72.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCC--EEEEEcCHHHHHHHhCC------CCCCcEEEEcCCCCCCCHHHHHHHHhcc--
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMP------PHQFDACFMDIQMPEMDGYEMLPCFESF-- 956 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~--~v~~a~~g~eAl~~~~~------~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-- 956 (993)
.+||||||++..+..+..+|+..|+ .+..+.++.+|++.+.. ...||+||+|+.||++||+++++.||+.
T Consensus 9 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~~ 88 (149)
T 1i3c_A 9 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNPD 88 (149)
T ss_dssp EEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCTT
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCcC
Confidence 4799999999999999999998887 89999999999999853 1469999999999999999999999985
Q ss_pred -CCceEEEEccccc
Q 001941 957 -LLIAILVWKLNLK 969 (993)
Q Consensus 957 -~~~~~~~~~~~~~ 969 (993)
..+|||+..-...
T Consensus 89 ~~~~piiils~~~~ 102 (149)
T 1i3c_A 89 LKRIPVVVLTTSHN 102 (149)
T ss_dssp TTTSCEEEEESCCC
T ss_pred cCCCeEEEEECCCC
Confidence 4789988754433
No 64
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=98.97 E-value=2.6e-09 Score=102.14 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=73.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
.+||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.||++||+++++.||+. ..+|+|+..
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIE-NEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVT 82 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEe
Confidence 58999999999999999999999999999999999999985 4679999999999999999999999974 568888874
Q ss_pred cccc
Q 001941 966 LNLK 969 (993)
Q Consensus 966 ~~~~ 969 (993)
-...
T Consensus 83 ~~~~ 86 (132)
T 3crn_A 83 GYAS 86 (132)
T ss_dssp SCCC
T ss_pred cccc
Confidence 4433
No 65
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=98.97 E-value=3.9e-09 Score=100.80 Aligned_cols=83 Identities=25% Similarity=0.419 Sum_probs=74.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCC--EEEEEcCHHHHHHHhCC------CCCCcEEEEcCCCCCCCHHHHHHHHhcc-
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMP------PHQFDACFMDIQMPEMDGYEMLPCFESF- 956 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~--~v~~a~~g~eAl~~~~~------~~~~DlIlmDi~MP~mdG~e~~~~Ir~~- 956 (993)
+++|||||||+..+..+...|+..|+ .+..+.++.+|++.+.. ...||+||+|+.||+++|+++++.||+.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 46899999999999999999999998 99999999999999963 1679999999999999999999999997
Q ss_pred --CCceEEEEcccc
Q 001941 957 --LLIAILVWKLNL 968 (993)
Q Consensus 957 --~~~~~~~~~~~~ 968 (993)
..+|||+..-..
T Consensus 82 ~~~~~pii~ls~~~ 95 (140)
T 1k68_A 82 TLKRIPVVVLSTSI 95 (140)
T ss_dssp TGGGSCEEEEESCC
T ss_pred ccccccEEEEecCC
Confidence 478898874443
No 66
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=98.96 E-value=1.7e-09 Score=105.28 Aligned_cols=119 Identities=16% Similarity=0.252 Sum_probs=90.3
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCE-EEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
+++|||||||++..+.+++..|+.+|+. |..++++.+|++.+.. ..||++++|..|+..++ ...++.+|+....
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~--~~~DlillD~~MP~mdG---~el~~~ir~~~~~ 85 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK--GDFDFVVTDWNMPGMQG---IDLLKNIRADEEL 85 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCH---HHHHHHHHHSTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCH---HHHHHHHHhCCCC
Confidence 4679999999999999999999999996 7789999999999876 46999999999876543 3466777775443
Q ss_pred CC-ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 816 FQ-SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 816 ~~-~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
.. |.+++.+.+... ...... ..|...++.||++.+.|.+.+.+++
T Consensus 86 ~~ipvI~lTa~~~~~-~~~~~~-~~Ga~~yl~KP~~~~~L~~~i~~~l 131 (134)
T 3to5_A 86 KHLPVLMITAEAKRE-QIIEAA-QAGVNGYIVKPFTAATLKEKLDKIF 131 (134)
T ss_dssp TTCCEEEEESSCCHH-HHHHHH-HTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCHH-HHHHHH-HCCCCEEEECCCCHHHHHHHHHHHH
Confidence 33 555544433222 222222 2378899999999999999998776
No 67
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=98.96 E-value=2.1e-09 Score=99.80 Aligned_cols=80 Identities=23% Similarity=0.358 Sum_probs=71.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
++||||||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||++||++++++||+. ...|+|+..
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 80 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFF-SGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLT 80 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEE
Confidence 37999999999999999999999999999999999999985 4679999999999999999999999975 467887774
Q ss_pred cc
Q 001941 966 LN 967 (993)
Q Consensus 966 ~~ 967 (993)
-.
T Consensus 81 ~~ 82 (116)
T 3a10_A 81 AY 82 (116)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 68
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=98.96 E-value=3e-09 Score=103.03 Aligned_cols=83 Identities=22% Similarity=0.399 Sum_probs=74.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCE--EEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhc---cCCce
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFES---FLLIA 960 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~--v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~---~~~~~ 960 (993)
..+||||||++..+..+..+|+..|+. +..+.++.+|++.+. ...||+||+|+.||+++|++++++||+ ...+|
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQ-QAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTP 83 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHT-TCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhh-cCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCC
Confidence 458999999999999999999999987 899999999999996 578999999999999999999999998 56789
Q ss_pred EEEEccccc
Q 001941 961 ILVWKLNLK 969 (993)
Q Consensus 961 ~~~~~~~~~ 969 (993)
||+..-...
T Consensus 84 ii~~s~~~~ 92 (144)
T 3kht_A 84 IVILTDNVS 92 (144)
T ss_dssp EEEEETTCC
T ss_pred EEEEeCCCC
Confidence 988754333
No 69
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=98.96 E-value=1.7e-09 Score=102.84 Aligned_cols=78 Identities=26% Similarity=0.307 Sum_probs=69.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC---CceEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL---LIAIL 962 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~---~~~~~ 962 (993)
+++||||||++..+..+..+|++.||.+.++.++.+|++.+. ...||+||+|+.||+++|++++++||+.. ..+|+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii 84 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLS-TFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKIL 84 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHH-hcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEE
Confidence 468999999999999999999999999999999999999985 46799999999999999999999999876 34445
Q ss_pred EE
Q 001941 963 VW 964 (993)
Q Consensus 963 ~~ 964 (993)
+.
T Consensus 85 ~~ 86 (132)
T 3lte_A 85 VV 86 (132)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 70
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=98.96 E-value=2.8e-09 Score=100.76 Aligned_cols=80 Identities=28% Similarity=0.373 Sum_probs=71.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCC-EEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhc---cCCceEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFES---FLLIAIL 962 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~-~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~---~~~~~~~ 962 (993)
.+||||||++..+..+...|+..|| .+..+.++.+|++.+. ...||+||+|+.||++||++++++||+ ...+|+|
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii 83 (128)
T 1jbe_A 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ-AGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVL 83 (128)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHT-TCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEE
T ss_pred cEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEE
Confidence 4799999999999999999999999 7999999999999995 467999999999999999999999997 3568888
Q ss_pred EEccc
Q 001941 963 VWKLN 967 (993)
Q Consensus 963 ~~~~~ 967 (993)
+..-.
T Consensus 84 ~~s~~ 88 (128)
T 1jbe_A 84 MVTAE 88 (128)
T ss_dssp EEESS
T ss_pred EEecC
Confidence 77433
No 71
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=98.95 E-value=2.6e-09 Score=110.46 Aligned_cols=83 Identities=20% Similarity=0.224 Sum_probs=74.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVW 964 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~ 964 (993)
+.+||||||++..+..+...|+..||+|..+.++.+|++.+. ...||+||+|+.||++||+++++.||+. ..+|||+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~l 82 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRR-PEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFI 82 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCC-TTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhh-ccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 358999999999999999999999999999999999999985 5679999999999999999999999976 46899887
Q ss_pred ccccc
Q 001941 965 KLNLK 969 (993)
Q Consensus 965 ~~~~~ 969 (993)
+-...
T Consensus 83 s~~~~ 87 (208)
T 1yio_A 83 TAHGD 87 (208)
T ss_dssp ESCTT
T ss_pred eCCCC
Confidence 54433
No 72
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=98.95 E-value=1.6e-09 Score=102.62 Aligned_cols=80 Identities=21% Similarity=0.387 Sum_probs=72.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCC-EEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAIL 962 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~-~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~ 962 (993)
.+||||||++..+..+...|+..|| .+..+.++.+|++.+. ...||+||+|+.||++||++++++||+. ..+|||
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 85 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMA-QNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFI 85 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHH-TSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHH-cCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEE
Confidence 5799999999999999999999999 8899999999999985 4679999999999999999999999985 578888
Q ss_pred EEccc
Q 001941 963 VWKLN 967 (993)
Q Consensus 963 ~~~~~ 967 (993)
+..-.
T Consensus 86 ~~s~~ 90 (129)
T 1p6q_A 86 ILTAQ 90 (129)
T ss_dssp ECCSC
T ss_pred EEeCC
Confidence 87433
No 73
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=98.94 E-value=2.4e-09 Score=100.05 Aligned_cols=78 Identities=26% Similarity=0.379 Sum_probs=71.0
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEcc
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWKL 966 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~~ 966 (993)
+||||||++..+..+...|+..||.+..+.++.+|++.+. .+.||++++|+.||++||++++++||+. ..+|+|+..-
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~-~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 80 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN-EHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTA 80 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEES
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHh-ccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEec
Confidence 6999999999999999999999999999999999999985 4679999999999999999999999975 4688887743
No 74
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=98.94 E-value=6.7e-10 Score=106.56 Aligned_cols=84 Identities=8% Similarity=0.029 Sum_probs=75.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCC-CEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILV 963 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g-~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~ 963 (993)
..+||||||++..+..+..+|++.| |++.++.++.+|++.+. .+.||+||+|+.||+++|++++++||+.. .+|||+
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 92 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPA-DTRPGIVILDLGGGDLLGKPGIVEARALWATVPLIA 92 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCT-TCCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHh-ccCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEE
Confidence 3589999999999999999999999 99999999999999985 57899999999999999999999999876 788988
Q ss_pred Ecccccc
Q 001941 964 WKLNLKI 970 (993)
Q Consensus 964 ~~~~~~~ 970 (993)
.+-....
T Consensus 93 ~s~~~~~ 99 (135)
T 3snk_A 93 VSDELTS 99 (135)
T ss_dssp EESCCCH
T ss_pred EeCCCCH
Confidence 7544433
No 75
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=98.94 E-value=4.5e-09 Score=100.06 Aligned_cols=80 Identities=21% Similarity=0.221 Sum_probs=71.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAIL 962 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~ 962 (993)
..+||||||++..+..+..+|+ .||++..+.++.+|++.+. ...||+||+|+.||++||++++++||+. ..+|||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii 81 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQAL-AHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVI 81 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHH-HSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEE
Confidence 3589999999999999999999 8999999999999999995 4679999999999999999999999985 478998
Q ss_pred EEccc
Q 001941 963 VWKLN 967 (993)
Q Consensus 963 ~~~~~ 967 (993)
+..-.
T Consensus 82 ~~s~~ 86 (133)
T 3nhm_A 82 FVSGY 86 (133)
T ss_dssp EEESC
T ss_pred EEeCC
Confidence 87443
No 76
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=98.94 E-value=2.9e-09 Score=100.37 Aligned_cols=79 Identities=19% Similarity=0.197 Sum_probs=72.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~~ 963 (993)
.+||||||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||+++|++++++||+. ..+|+|+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 81 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVM 81 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCS-SSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh-ccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEE
Confidence 47999999999999999999999999999999999999885 4679999999999999999999999986 5789988
Q ss_pred Ecc
Q 001941 964 WKL 966 (993)
Q Consensus 964 ~~~ 966 (993)
..-
T Consensus 82 ~s~ 84 (127)
T 2jba_A 82 LTA 84 (127)
T ss_dssp EEE
T ss_pred EeC
Confidence 743
No 77
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=98.93 E-value=3e-09 Score=109.98 Aligned_cols=82 Identities=28% Similarity=0.354 Sum_probs=74.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~ 965 (993)
.+||||||++..+..+...|+..||.+. .+.++.+|++.+. ...||+||+|+.||++||+++++.||+....|||+.+
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~-~~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~lt 92 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAE-LHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLT 92 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEEE
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEe
Confidence 5899999999999999999999999998 8999999999985 4679999999999999999999999998888998874
Q ss_pred cccc
Q 001941 966 LNLK 969 (993)
Q Consensus 966 ~~~~ 969 (993)
-...
T Consensus 93 ~~~~ 96 (205)
T 1s8n_A 93 AFSQ 96 (205)
T ss_dssp EGGG
T ss_pred cCCC
Confidence 4333
No 78
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=98.93 E-value=1.7e-09 Score=115.65 Aligned_cols=82 Identities=24% Similarity=0.315 Sum_probs=74.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILVW 964 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~~ 964 (993)
..+||||||++..+..+..+|+..||+|..+.|+.+|++.+. ...||+||+|++||++||++++++||+.. .+|||+.
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l 101 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAR-ETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFL 101 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 468999999999999999999999999999999999999985 46799999999999999999999999874 6889887
Q ss_pred cccc
Q 001941 965 KLNL 968 (993)
Q Consensus 965 ~~~~ 968 (993)
+-..
T Consensus 102 t~~~ 105 (250)
T 3r0j_A 102 TARD 105 (250)
T ss_dssp ECST
T ss_pred ECCC
Confidence 5443
No 79
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=98.93 E-value=2.9e-09 Score=99.51 Aligned_cols=81 Identities=25% Similarity=0.279 Sum_probs=71.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCE-EEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVW 964 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~-v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~ 964 (993)
.+||||||++..+..+...|+..||+ +..+.++.+|++.+. ...||+||+|+.||++||++++++||+. ...|+|+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~-~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYK-ELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVC 81 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHH-hcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEE
Confidence 58999999999999999999999999 568999999999985 4679999999999999999999999975 46788877
Q ss_pred cccc
Q 001941 965 KLNL 968 (993)
Q Consensus 965 ~~~~ 968 (993)
.-..
T Consensus 82 s~~~ 85 (120)
T 1tmy_A 82 SAMG 85 (120)
T ss_dssp ECTT
T ss_pred eCCC
Confidence 4433
No 80
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=98.93 E-value=2.2e-09 Score=103.16 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=73.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCC--CCHHHHHHHHhccC-CceEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE--MDGYEMLPCFESFL-LIAIL 962 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~--mdG~e~~~~Ir~~~-~~~~~ 962 (993)
..+||||||++..+..+..+|++.||++..+.++.+|++.+. ...||+||+|+.||+ ++|++++++||+.. .+|||
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii 84 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQI-SDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTI 84 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCC-CTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh-ccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEE
Confidence 358999999999999999999999999999999999999985 578999999999999 99999999999865 68888
Q ss_pred EEccccc
Q 001941 963 VWKLNLK 969 (993)
Q Consensus 963 ~~~~~~~ 969 (993)
+.+-...
T Consensus 85 ~~s~~~~ 91 (136)
T 3kto_A 85 VMASSSD 91 (136)
T ss_dssp EEESSCC
T ss_pred EEEcCCC
Confidence 8744433
No 81
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=98.93 E-value=2.4e-09 Score=102.40 Aligned_cols=80 Identities=26% Similarity=0.439 Sum_probs=72.3
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
++||||||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+. ...|||+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAE-TEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLT 82 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh-hcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 58999999999999999999999999999999999999885 4679999999999999999999999986 567887774
Q ss_pred cc
Q 001941 966 LN 967 (993)
Q Consensus 966 ~~ 967 (993)
-.
T Consensus 83 ~~ 84 (136)
T 1mvo_A 83 AK 84 (136)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 82
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=98.93 E-value=2.2e-09 Score=103.63 Aligned_cols=78 Identities=32% Similarity=0.483 Sum_probs=70.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc------CCce
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF------LLIA 960 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~------~~~~ 960 (993)
.+||||||++..+..+...|+..|+.+..+.++.+|++.+. ...||+||+|+.||++||++++++||+. ..+|
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~-~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ 89 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQ-NRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRAS 89 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHH-HSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceE
Confidence 48999999999999999999999999999999999999985 4679999999999999999999999974 5678
Q ss_pred EEEEc
Q 001941 961 ILVWK 965 (993)
Q Consensus 961 ~~~~~ 965 (993)
+++..
T Consensus 90 ii~~s 94 (140)
T 3c97_A 90 IIAIT 94 (140)
T ss_dssp CEEEE
T ss_pred EEEEe
Confidence 87763
No 83
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=98.92 E-value=3.6e-09 Score=101.65 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=72.8
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCC-CCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEE
Q 001941 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP-HQFDACFMDIQMPEMDGYEMLPCFESFL-LIAIL 962 (993)
Q Consensus 885 ~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~-~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~ 962 (993)
.+.+||||||++..+..+...|+..||.+..+.++.+|++.+. . ..||+||+|+.||+++|++++++||+.. .+|||
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii 92 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRS-QLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVL 92 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGG-GGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHH-hCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 4568999999999999999999999999999999999999985 5 5799999999999999999999999853 68888
Q ss_pred EEc
Q 001941 963 VWK 965 (993)
Q Consensus 963 ~~~ 965 (993)
+..
T Consensus 93 ~ls 95 (138)
T 2b4a_A 93 ILT 95 (138)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 84
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=98.92 E-value=6.4e-09 Score=100.17 Aligned_cols=80 Identities=24% Similarity=0.343 Sum_probs=73.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhc---cCCceEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFES---FLLIAIL 962 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~---~~~~~~~ 962 (993)
..+|||||||+..+..+...|+..||+|..+.++.+|++.+. ...||+||+|+.||+++|++++++||+ ...+|||
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii 85 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLK-KGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIV 85 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-TCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEE
Confidence 468999999999999999999999999999999999999995 467999999999999999999999997 4678888
Q ss_pred EEcc
Q 001941 963 VWKL 966 (993)
Q Consensus 963 ~~~~ 966 (993)
+..-
T Consensus 86 ~~s~ 89 (142)
T 3cg4_A 86 MLTA 89 (142)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8743
No 85
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=98.91 E-value=2.5e-09 Score=99.79 Aligned_cols=81 Identities=19% Similarity=0.298 Sum_probs=73.2
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEccc
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWKLN 967 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~~~ 967 (993)
+||||||++..+..+...|+..||.+..+.++.+|+..+. ...||+||+|+.||+++|++++++||+....|+|+..-.
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~ 81 (121)
T 1zh2_A 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-TRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSAR 81 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESC
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEECC
Confidence 7999999999999999999999999999999999999885 457999999999999999999999998888999887444
Q ss_pred cc
Q 001941 968 LK 969 (993)
Q Consensus 968 ~~ 969 (993)
..
T Consensus 82 ~~ 83 (121)
T 1zh2_A 82 SE 83 (121)
T ss_dssp CS
T ss_pred CC
Confidence 33
No 86
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.91 E-value=8.7e-10 Score=125.49 Aligned_cols=82 Identities=18% Similarity=0.211 Sum_probs=73.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
++||||||++.++..+..+|++.||.|..+.|+.+|++.+. ...||+||+|++||+|||++++++||+. ..+|||+.+
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-~~~~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~lT 79 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIK-ELFFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVIT 79 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HBCCSEEEEESEETTEETTTHHHHHHHHCTTCEEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEe
Confidence 47999999999999999999999999999999999999995 4679999999999999999999999975 467888875
Q ss_pred cccc
Q 001941 966 LNLK 969 (993)
Q Consensus 966 ~~~~ 969 (993)
-...
T Consensus 80 ~~~~ 83 (368)
T 3dzd_A 80 GHGS 83 (368)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 4443
No 87
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=98.91 E-value=4.9e-09 Score=101.42 Aligned_cols=84 Identities=19% Similarity=0.332 Sum_probs=74.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCC--EEEEEcCHHHHHHHhCC-------C--CCCcEEEEcCCCCCCCHHHHHHHHh
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMP-------P--HQFDACFMDIQMPEMDGYEMLPCFE 954 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~--~v~~a~~g~eAl~~~~~-------~--~~~DlIlmDi~MP~mdG~e~~~~Ir 954 (993)
+.+||||||++..+..+...|+..|+ .+..+.++.+|++.+.. . ..||+||+|+.||+++|+++++.||
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 85 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIK 85 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHH
Confidence 46899999999999999999999998 89999999999999853 1 6799999999999999999999999
Q ss_pred cc---CCceEEEEccccc
Q 001941 955 SF---LLIAILVWKLNLK 969 (993)
Q Consensus 955 ~~---~~~~~~~~~~~~~ 969 (993)
+. ..+|||+..-...
T Consensus 86 ~~~~~~~~~ii~~t~~~~ 103 (149)
T 1k66_A 86 QDEVLKKIPVVIMTTSSN 103 (149)
T ss_dssp TSTTGGGSCEEEEESCCC
T ss_pred hCcccCCCeEEEEeCCCC
Confidence 87 5788988754443
No 88
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=98.91 E-value=4.1e-09 Score=104.11 Aligned_cols=86 Identities=23% Similarity=0.287 Sum_probs=74.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEE-EEcCHHHHHHHhCCCC--CCcEEEEcCCCCCCCHHHHHHHHhcc-CCceE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPH--QFDACFMDIQMPEMDGYEMLPCFESF-LLIAI 961 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~~~~~~--~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~ 961 (993)
..+|||||||+..+..+..+|++.||++. .+.++.+|++.+. .. .||+||+|+.||+++|++++++||+. ..+||
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~-~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~i 114 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYK-NHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARV 114 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCE
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH-hcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcE
Confidence 35899999999999999999999999998 9999999999985 35 68999999999999999999999985 46888
Q ss_pred EEEcccccchh
Q 001941 962 LVWKLNLKISW 972 (993)
Q Consensus 962 ~~~~~~~~~~~ 972 (993)
|+..-......
T Consensus 115 i~ls~~~~~~~ 125 (157)
T 3hzh_A 115 IMISALGKEQL 125 (157)
T ss_dssp EEEESCCCHHH
T ss_pred EEEeccCcHHH
Confidence 88754444333
No 89
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=98.90 E-value=8.1e-09 Score=99.69 Aligned_cols=83 Identities=19% Similarity=0.340 Sum_probs=73.5
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCC-CCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMP-PHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILVW 964 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~-~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~~ 964 (993)
.+||||||++..+..+..+|+..||.+..+.++.+|++.+.. ...||+||+|+.||+++|++++++||+.. .+|||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 83 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIIL 83 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEE
Confidence 589999999999999999999999999999999999998842 36799999999999999999999999865 5888887
Q ss_pred ccccc
Q 001941 965 KLNLK 969 (993)
Q Consensus 965 ~~~~~ 969 (993)
.-...
T Consensus 84 s~~~~ 88 (143)
T 3jte_A 84 TGHGD 88 (143)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 54443
No 90
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=98.90 E-value=6.2e-09 Score=102.12 Aligned_cols=83 Identities=23% Similarity=0.236 Sum_probs=74.5
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEE
Q 001941 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILV 963 (993)
Q Consensus 885 ~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~ 963 (993)
.+.+||||||++..+..+..+|+..||++..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+. ..+|||+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALK-GTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVV 84 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHT-TSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEE
Confidence 3568999999999999999999999999999999999999996 4679999999999999999999999985 4788888
Q ss_pred Ecccc
Q 001941 964 WKLNL 968 (993)
Q Consensus 964 ~~~~~ 968 (993)
..-..
T Consensus 85 ls~~~ 89 (154)
T 2rjn_A 85 ISGYA 89 (154)
T ss_dssp EECGG
T ss_pred EecCC
Confidence 74433
No 91
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=98.90 E-value=1.4e-09 Score=124.53 Aligned_cols=78 Identities=26% Similarity=0.365 Sum_probs=71.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
.+||||||++.++..+..+|++.||+|..+.|+.+|++.+. .+.||+||+|++||+|||++++++||+. ..+|||+.+
T Consensus 6 ~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~-~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~lt 84 (394)
T 3eq2_A 6 ATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFE-SEQPDLVICDLRMPQIDGLELIRRIRQTASETPIIVLS 84 (394)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHH-HSCCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEEC-
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh-hCCCCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEEEE
Confidence 48999999999999999999999999999999999999995 4679999999999999999999999986 468888874
No 92
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=98.90 E-value=6.7e-09 Score=99.86 Aligned_cols=86 Identities=21% Similarity=0.221 Sum_probs=75.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHh-CCCE-EEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhc---cCCce
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKR-YGAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFES---FLLIA 960 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~-~g~~-v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~---~~~~~ 960 (993)
..+|||||||+..+..+...|+. .||+ +..+.++.+|++.+. ...||+||+|+.||+++|++++++||+ ...+|
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 86 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLH-TVKPDVVMLDLMMVGMDGFSICHRIKSTPATANII 86 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHH-HTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSE
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHH-hcCCCEEEEecccCCCcHHHHHHHHHhCccccCCc
Confidence 46899999999999999999999 9999 999999999999985 467999999999999999999999998 56789
Q ss_pred EEEEcccccchh
Q 001941 961 ILVWKLNLKISW 972 (993)
Q Consensus 961 ~~~~~~~~~~~~ 972 (993)
||+..-......
T Consensus 87 ii~~s~~~~~~~ 98 (143)
T 3cnb_A 87 VIAMTGALTDDN 98 (143)
T ss_dssp EEEEESSCCHHH
T ss_pred EEEEeCCCCHHH
Confidence 988754444433
No 93
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.90 E-value=4e-09 Score=101.67 Aligned_cols=81 Identities=16% Similarity=0.297 Sum_probs=72.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
.+||||||++..+..+..+|+..||++..+.++.+|++.+. ...||+||+|+.||+++|++++++||+. ..+|||+..
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls 83 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIE-RSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIAT 83 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHH-HHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHH-hcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 37999999999999999999999999999999999999985 4679999999999999999999999986 467888774
Q ss_pred ccc
Q 001941 966 LNL 968 (993)
Q Consensus 966 ~~~ 968 (993)
-..
T Consensus 84 ~~~ 86 (137)
T 3cfy_A 84 AHG 86 (137)
T ss_dssp SSC
T ss_pred ecC
Confidence 433
No 94
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=98.89 E-value=9.3e-09 Score=98.50 Aligned_cols=69 Identities=25% Similarity=0.448 Sum_probs=63.7
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhc
Q 001941 885 LGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFES 955 (993)
Q Consensus 885 ~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~ 955 (993)
.+.+||||||++..+..+..+|+..||+|..+.++.+|++.+. ... |+||+|+.||++||++++++||+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~-dlvllD~~lp~~~g~~~~~~l~~ 74 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS-HEH-KVVFMDVCMPGVENYQIALRIHE 74 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCC-TTC-SEEEEECCSSTTTTTHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-ccC-CEEEEeCCCCCCcHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999985 344 99999999999999999999994
No 95
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=98.89 E-value=2e-09 Score=115.55 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=75.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEc
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWK 965 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~ 965 (993)
..+||||||++..+..+...|+..||.|..+.++.+|++.+. ...||+||+|+.||++||++++++||+...+|||+.+
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt 115 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAR-EDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLT 115 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-HSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 468999999999999999999999999999999999999985 4679999999999999999999999998889998885
Q ss_pred cccc
Q 001941 966 LNLK 969 (993)
Q Consensus 966 ~~~~ 969 (993)
-...
T Consensus 116 ~~~~ 119 (249)
T 3q9s_A 116 ARDT 119 (249)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 5443
No 96
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=98.89 E-value=1.1e-08 Score=100.10 Aligned_cols=86 Identities=22% Similarity=0.315 Sum_probs=75.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCC--CEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAIL 962 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g--~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~ 962 (993)
..+||||||++..+..+..+|+..| +.+..+.++.+|++.+. ...||+||+|+.||+++|++++++||+. ..+|||
T Consensus 20 m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii 98 (150)
T 4e7p_A 20 HMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLE-KESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVV 98 (150)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHT-TSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhh-ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEE
Confidence 3589999999999999999999887 88999999999999996 5789999999999999999999999985 468888
Q ss_pred EEcccccchh
Q 001941 963 VWKLNLKISW 972 (993)
Q Consensus 963 ~~~~~~~~~~ 972 (993)
+..-......
T Consensus 99 ~ls~~~~~~~ 108 (150)
T 4e7p_A 99 VVTTFKRAGY 108 (150)
T ss_dssp EEESCCCHHH
T ss_pred EEeCCCCHHH
Confidence 8855444333
No 97
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=98.88 E-value=2e-09 Score=104.51 Aligned_cols=87 Identities=11% Similarity=0.022 Sum_probs=74.8
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHhCC-CEEEEEcCHHHHHHHhCCC-CCCcEEEEcCCCCCCCHHHHHHHHhccC-CceE
Q 001941 885 LGRKILIVDDNNVNLKVAAAGLKRYG-AAVVCVERGKKATELLMPP-HQFDACFMDIQMPEMDGYEMLPCFESFL-LIAI 961 (993)
Q Consensus 885 ~~~~ILIVdDn~~n~~vl~~~L~~~g-~~v~~a~~g~eAl~~~~~~-~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~ 961 (993)
.+.+||||||++..+..+..+|+..| |++..+.++.+|+..+... ..||+||+|+.||++||++++++||+.. .+||
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 98 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTC 98 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcE
Confidence 35699999999999999999999999 9999999999998877433 6799999999999999999999999765 5788
Q ss_pred EEEcccccch
Q 001941 962 LVWKLNLKIS 971 (993)
Q Consensus 962 ~~~~~~~~~~ 971 (993)
|+..-.....
T Consensus 99 i~lt~~~~~~ 108 (146)
T 4dad_A 99 LLVTTDASSQ 108 (146)
T ss_dssp EEEESCCCHH
T ss_pred EEEeCCCCHH
Confidence 8875444433
No 98
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=98.88 E-value=7.1e-09 Score=101.44 Aligned_cols=83 Identities=24% Similarity=0.318 Sum_probs=71.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVW 964 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~ 964 (993)
..+|||||||+..+..+..+|+. ||++..+.++.+|++.+....+||+||+|+.||+++|+++++.||+. ..+|||+.
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 82 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLML 82 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE
Confidence 36899999999999999999986 99999999999999998543346999999999999999999999974 56788877
Q ss_pred ccccc
Q 001941 965 KLNLK 969 (993)
Q Consensus 965 ~~~~~ 969 (993)
.-...
T Consensus 83 s~~~~ 87 (151)
T 3kcn_A 83 TGNQD 87 (151)
T ss_dssp ECGGG
T ss_pred ECCCC
Confidence 44333
No 99
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=98.88 E-value=5.6e-09 Score=99.23 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=70.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHhC-CCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc--CCceEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRY-GAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF--LLIAIL 962 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~-g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~--~~~~~~ 962 (993)
.+||||||++..+..+..+|+.. |+.+. .+.++.+|++.+. ...||+||+|+.||++||++++++||+. ...|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~-~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ii 81 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLE-EKRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVI 81 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcEE
Confidence 47999999999999999999987 88876 7999999999985 4679999999999999999999999974 457787
Q ss_pred EEcccccc
Q 001941 963 VWKLNLKI 970 (993)
Q Consensus 963 ~~~~~~~~ 970 (993)
+..-....
T Consensus 82 ~ls~~~~~ 89 (130)
T 1dz3_A 82 MLTAFGQE 89 (130)
T ss_dssp EEEETTCH
T ss_pred EEecCCCH
Confidence 76444333
No 100
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=98.87 E-value=4.8e-09 Score=99.97 Aligned_cols=83 Identities=14% Similarity=0.239 Sum_probs=71.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILVW 964 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~~ 964 (993)
.+||||||++..+..+..+|++.||.+. .+.++.+|++.+. ...||+||+|+.||+++|++++++||+.. ..|||+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~ 80 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE-TLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIV 80 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHH-HHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHH-hcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEE
Confidence 3799999999999999999999999998 8999999999985 46799999999999999999999999764 5788877
Q ss_pred cccccc
Q 001941 965 KLNLKI 970 (993)
Q Consensus 965 ~~~~~~ 970 (993)
+-...-
T Consensus 81 s~~~~~ 86 (134)
T 3f6c_A 81 SAKNDH 86 (134)
T ss_dssp ECC---
T ss_pred eCCCCh
Confidence 544443
No 101
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=98.87 E-value=1.1e-08 Score=98.69 Aligned_cols=84 Identities=19% Similarity=0.345 Sum_probs=74.2
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCC--EEEEEcCHHHHHHHhCC-----CCCCcEEEEcCCCCCCCHHHHHHHHhcc--
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGA--AVVCVERGKKATELLMP-----PHQFDACFMDIQMPEMDGYEMLPCFESF-- 956 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~--~v~~a~~g~eAl~~~~~-----~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-- 956 (993)
..+|||||||+..+..+...|+..|+ .+..+.++.+|++.+.. ...||+||+|+.||+++|+++++.||+.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 86 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSS 86 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCcc
Confidence 35899999999999999999999998 99999999999999853 1579999999999999999999999987
Q ss_pred -CCceEEEEccccc
Q 001941 957 -LLIAILVWKLNLK 969 (993)
Q Consensus 957 -~~~~~~~~~~~~~ 969 (993)
..+|||+..-...
T Consensus 87 ~~~~~ii~ls~~~~ 100 (143)
T 2qvg_A 87 FTDIEVFVLTAAYT 100 (143)
T ss_dssp GTTCEEEEEESCCC
T ss_pred ccCCcEEEEeCCCC
Confidence 5789988744433
No 102
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=98.86 E-value=5e-09 Score=100.39 Aligned_cols=83 Identities=24% Similarity=0.240 Sum_probs=73.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILVW 964 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~~ 964 (993)
..+|||||||+..+..+..+|+..|+.+..+.++.+|++.+. ...||+||+|+.||+++|++++++||+.. .+|||+.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~ 85 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFG-LHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVI 85 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEEC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 358999999999999999999999999999999999999985 46799999999999999999999999865 5778777
Q ss_pred ccccc
Q 001941 965 KLNLK 969 (993)
Q Consensus 965 ~~~~~ 969 (993)
.-...
T Consensus 86 s~~~~ 90 (137)
T 3hdg_A 86 SAFSE 90 (137)
T ss_dssp CCCCC
T ss_pred ecCcC
Confidence 44433
No 103
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=98.86 E-value=4.5e-09 Score=102.00 Aligned_cols=83 Identities=13% Similarity=0.239 Sum_probs=74.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhc---cCCceEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFES---FLLIAIL 962 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~---~~~~~~~ 962 (993)
..+||||||++..+..+...|+..||+|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+ ...+|||
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii 86 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAV-KTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVI 86 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHH-cCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 458999999999999999999999999999999999999985 467999999999999999999999997 5789998
Q ss_pred EEccccc
Q 001941 963 VWKLNLK 969 (993)
Q Consensus 963 ~~~~~~~ 969 (993)
+..-...
T Consensus 87 ~ls~~~~ 93 (147)
T 2zay_A 87 ALSGRAT 93 (147)
T ss_dssp EEESSCC
T ss_pred EEeCCCC
Confidence 8754443
No 104
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=98.86 E-value=9.8e-09 Score=97.40 Aligned_cols=85 Identities=24% Similarity=0.291 Sum_probs=74.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCC-CCcEEEEcCCCCC-CCHHHHHHHHhccC-CceEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPH-QFDACFMDIQMPE-MDGYEMLPCFESFL-LIAIL 962 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~-~~DlIlmDi~MP~-mdG~e~~~~Ir~~~-~~~~~ 962 (993)
..+||||||++..+..+...|+..||++..+.++.+|++.+. .. .||+||+|+.||+ ++|++++++||+.. .+|||
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii 83 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLK-SGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIV 83 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-TTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-cCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 468999999999999999999999999999999999999995 44 7999999999998 99999999999864 68888
Q ss_pred EEcccccch
Q 001941 963 VWKLNLKIS 971 (993)
Q Consensus 963 ~~~~~~~~~ 971 (993)
+..-.....
T Consensus 84 ~~s~~~~~~ 92 (132)
T 2rdm_A 84 YISGHAALE 92 (132)
T ss_dssp EEESSCCTT
T ss_pred EEeCCccHH
Confidence 875444333
No 105
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=98.86 E-value=6.5e-09 Score=100.13 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=66.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAIL 962 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~ 962 (993)
.++||||||++..+..+..+|+.. |.+..+.++.+|++.+. ...||+||+|+.||++||++++++||+. ..+|||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQID-HHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLI 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHH-HHCCSEEEEETTC------CHHHHHHTSTTCTTCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEE
Confidence 358999999999999999999988 99999999999999985 4679999999999999999999999987 578998
Q ss_pred EEccc
Q 001941 963 VWKLN 967 (993)
Q Consensus 963 ~~~~~ 967 (993)
+..-.
T Consensus 81 ~~s~~ 85 (140)
T 3n53_A 81 LLFSS 85 (140)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 87443
No 106
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=98.85 E-value=5.9e-09 Score=96.14 Aligned_cols=79 Identities=16% Similarity=0.169 Sum_probs=72.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~~ 963 (993)
++||||||++..+..+...|+..||++..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+. ..+|+|+
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~-~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~ 80 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLD-LLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVL 80 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-HHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHH-hcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEE
Confidence 58999999999999999999999999999999999999985 4679999999999999999999999987 5788887
Q ss_pred Ecc
Q 001941 964 WKL 966 (993)
Q Consensus 964 ~~~ 966 (993)
..-
T Consensus 81 ~~~ 83 (119)
T 2j48_A 81 FLG 83 (119)
T ss_dssp EES
T ss_pred EeC
Confidence 643
No 107
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=98.85 E-value=7.4e-09 Score=99.05 Aligned_cols=82 Identities=22% Similarity=0.330 Sum_probs=71.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCC--CEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYG--AAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g--~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~ 963 (993)
.+|||+||++..+..+..+|+..| +.+..+.++.+|++.+. ...||+||+|+.||++||++++++||+. ..+|||+
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~-~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ 82 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIE-EYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVII 82 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEE
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHh-hcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEE
Confidence 479999999999999999999877 56778999999999885 4679999999999999999999999975 4689988
Q ss_pred Eccccc
Q 001941 964 WKLNLK 969 (993)
Q Consensus 964 ~~~~~~ 969 (993)
..-...
T Consensus 83 ls~~~~ 88 (133)
T 3b2n_A 83 VTTFKR 88 (133)
T ss_dssp EESCCC
T ss_pred EecCCC
Confidence 754433
No 108
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=98.84 E-value=1.6e-08 Score=99.24 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=73.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVW 964 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~ 964 (993)
+.+||||||++..+..+..+|+..||++..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+. ..+|||+.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~l 81 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLS-ADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILV 81 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCC-TTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 358999999999999999999999999999999999999985 4679999999999999999999999986 47888887
Q ss_pred ccccc
Q 001941 965 KLNLK 969 (993)
Q Consensus 965 ~~~~~ 969 (993)
.-...
T Consensus 82 s~~~~ 86 (155)
T 1qkk_A 82 TGHGD 86 (155)
T ss_dssp ECGGG
T ss_pred ECCCC
Confidence 44333
No 109
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=98.83 E-value=9.5e-09 Score=96.35 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=71.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCC-CCCHHHHHHHHhcc---CCceEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP-EMDGYEMLPCFESF---LLIAIL 962 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP-~mdG~e~~~~Ir~~---~~~~~~ 962 (993)
.+||||||++..+..+...|+..||++..+.++.+|++.+. .+.||+||+|+.|| +++|++++++||+. ..+|||
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii 84 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIR-RDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIV 84 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHH-HHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHH-hcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEE
Confidence 58999999999999999999999999999999999999985 46799999999999 99999999999986 678987
Q ss_pred EE
Q 001941 963 VW 964 (993)
Q Consensus 963 ~~ 964 (993)
+.
T Consensus 85 ~~ 86 (127)
T 2gkg_A 85 II 86 (127)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 110
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=98.83 E-value=1.4e-08 Score=97.95 Aligned_cols=82 Identities=13% Similarity=0.290 Sum_probs=73.4
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILVW 964 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~~ 964 (993)
..+||||||++..+..+..+|+..||++..+.++.+|++.+. ...||+||+|+ ||+++|+++++.||+.. .+|||+.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~l 81 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR-REKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVL 81 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHT-TSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh-ccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEE
Confidence 358999999999999999999999999999999999999996 46899999999 99999999999999865 5888887
Q ss_pred ccccc
Q 001941 965 KLNLK 969 (993)
Q Consensus 965 ~~~~~ 969 (993)
.-...
T Consensus 82 s~~~~ 86 (142)
T 2qxy_A 82 SAYVD 86 (142)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 54433
No 111
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=98.83 E-value=3.5e-09 Score=121.76 Aligned_cols=78 Identities=23% Similarity=0.327 Sum_probs=69.5
Q ss_pred CeEEEEeCChHHHHHHHHHHHh-CCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKR-YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVW 964 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~-~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~ 964 (993)
.+||||||++.++..+..+|++ .|+.|..+.||.+|++.+.....||+||+|++||+|||++++++||+....+.|+.
T Consensus 4 ~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~~~DlvllDi~mP~~dG~ell~~l~~~~~~~~ii~ 82 (400)
T 3sy8_A 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAICDLQMSGMDGLAFLRHASLSGKVHSVIL 82 (400)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHSCEEEEEECSSCSSSCHHHHHHHHHHHTCEEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCceEEE
Confidence 4899999999999999999998 68899999999999999852147999999999999999999999999877666554
No 112
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.83 E-value=4.8e-09 Score=122.48 Aligned_cols=80 Identities=24% Similarity=0.308 Sum_probs=72.7
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~~ 963 (993)
++||||||++.++..+..+|+..||.|..+.+|.+|++.+. ...||+||+|+.||+|||++++++||+. ..+|||+
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~-~~~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii~ 80 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAA-RDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVL 80 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-cCCCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEEE
Confidence 47999999999999999999999999999999999999985 4679999999999999999999999974 4789988
Q ss_pred Eccc
Q 001941 964 WKLN 967 (993)
Q Consensus 964 ~~~~ 967 (993)
.+-.
T Consensus 81 lt~~ 84 (459)
T 1w25_A 81 ITAL 84 (459)
T ss_dssp EECS
T ss_pred EECC
Confidence 7543
No 113
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=98.82 E-value=1.6e-08 Score=105.67 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=72.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
.+||||||++..+..+..+|+..||+|..+.++.+|++.+. ...||+||+|+.||++||+++++.||+. ..+|||+.+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls 81 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMAL-NEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLT 81 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEe
Confidence 47999999999999999999999999999999999999885 4679999999999999999999999986 478998874
Q ss_pred cc
Q 001941 966 LN 967 (993)
Q Consensus 966 ~~ 967 (993)
-.
T Consensus 82 ~~ 83 (225)
T 1kgs_A 82 AL 83 (225)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 114
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=98.82 E-value=1.2e-08 Score=97.78 Aligned_cols=83 Identities=19% Similarity=0.240 Sum_probs=74.2
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCC-CCCHHHHHHHHhccCCceEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMP-EMDGYEMLPCFESFLLIAILV 963 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP-~mdG~e~~~~Ir~~~~~~~~~ 963 (993)
..+||||||++..+..+...|+..||++. ++.++.+|++.+. ...||+||+|+.|| +++|+++++.||+...+|||+
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~-~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ 87 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAP-DLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIF 87 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-HHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHH-hCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEE
Confidence 46899999999999999999999999999 5999999999985 46799999999999 899999999999888899988
Q ss_pred Eccccc
Q 001941 964 WKLNLK 969 (993)
Q Consensus 964 ~~~~~~ 969 (993)
..-...
T Consensus 88 ls~~~~ 93 (140)
T 3cg0_A 88 ITSSQD 93 (140)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 744433
No 115
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=98.82 E-value=7.4e-09 Score=99.70 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=70.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
++||||||++..+..+...|+.. |.+..+.++.+|++.+. .+.||+||+|+.||++||++++++||+. ...|+|+..
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s 79 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILE-EEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIIT 79 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHH-HSCEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHh-cCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEe
Confidence 37999999999999999999875 99999999999999885 4679999999999999999999999975 457887774
Q ss_pred ccc
Q 001941 966 LNL 968 (993)
Q Consensus 966 ~~~ 968 (993)
-..
T Consensus 80 ~~~ 82 (139)
T 2jk1_A 80 GYT 82 (139)
T ss_dssp SCT
T ss_pred CCC
Confidence 433
No 116
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=98.82 E-value=7.1e-09 Score=109.93 Aligned_cols=80 Identities=19% Similarity=0.320 Sum_probs=73.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEcc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWKL 966 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~~ 966 (993)
.+||||||++..+..+..+|+..||+|..+.++.+|++.+. ...||+||+|+.||++||+++++.||+...+|||+..-
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~ 84 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVR-ELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTA 84 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeC
Confidence 48999999999999999999999999999999999999985 46799999999999999999999999988899988743
Q ss_pred c
Q 001941 967 N 967 (993)
Q Consensus 967 ~ 967 (993)
.
T Consensus 85 ~ 85 (238)
T 2gwr_A 85 K 85 (238)
T ss_dssp T
T ss_pred C
Confidence 3
No 117
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=98.81 E-value=2e-08 Score=97.26 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=70.5
Q ss_pred CeEEEEeCChHHHHHHHHHHH--hCCCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLK--RYGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAIL 962 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~--~~g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~ 962 (993)
.+||||||++..+..+...|. ..||.+. .+.++.+|++.+. ...||+||+|+.||++||++++++||+. ..+|||
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~-~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii 81 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIAL-KHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVI 81 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHT-TSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHh-cCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEE
Confidence 479999999999999999997 3688887 9999999999995 4679999999999999999999999975 567888
Q ss_pred EEcccc
Q 001941 963 VWKLNL 968 (993)
Q Consensus 963 ~~~~~~ 968 (993)
+..-..
T Consensus 82 ~ls~~~ 87 (141)
T 3cu5_A 82 FMSGYS 87 (141)
T ss_dssp EECCST
T ss_pred EEeCCC
Confidence 874433
No 118
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=98.80 E-value=8.1e-09 Score=108.48 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=73.0
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEcc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWKL 966 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~~ 966 (993)
.+||||||++..+..+..+|+..||+|..+.++.+|++.+. ...||+||+|+.||++||+++++.||+...+|||+..-
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~ 83 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFD-RAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTA 83 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH-HHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEEC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-ccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeC
Confidence 48999999999999999999999999999999999999885 46799999999999999999999999988899988743
No 119
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=98.80 E-value=1.9e-08 Score=105.69 Aligned_cols=80 Identities=25% Similarity=0.384 Sum_probs=72.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
.+||||||++..+..+...|+..||+|..+.++.+|++.+. ...||+||+|+.||++||+++++.||+. ..+|||+.+
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt 86 (233)
T 1ys7_A 8 PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSAT-ENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLS 86 (233)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-HSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 58999999999999999999999999999999999999985 4679999999999999999999999986 578998874
Q ss_pred cc
Q 001941 966 LN 967 (993)
Q Consensus 966 ~~ 967 (993)
-.
T Consensus 87 ~~ 88 (233)
T 1ys7_A 87 AR 88 (233)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 120
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=98.79 E-value=1.8e-08 Score=98.59 Aligned_cols=85 Identities=24% Similarity=0.327 Sum_probs=72.7
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCE--EEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceE
Q 001941 885 LGRKILIVDDNNVNLKVAAAGLKRYGAA--VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAI 961 (993)
Q Consensus 885 ~~~~ILIVdDn~~n~~vl~~~L~~~g~~--v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~ 961 (993)
.+.+||||||++..+..+..+|++.|+. +..+.++.+|++.+. ...||+||+|+.||+++|++++++||+. ..+||
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~i 92 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIK-AHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRV 92 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHH-HHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEE
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeE
Confidence 3568999999999999999999999855 558999999999985 4679999999999999999999999975 45788
Q ss_pred EEEcccccc
Q 001941 962 LVWKLNLKI 970 (993)
Q Consensus 962 ~~~~~~~~~ 970 (993)
|+..-...-
T Consensus 93 i~~s~~~~~ 101 (152)
T 3eul_A 93 LLISAHDEP 101 (152)
T ss_dssp EEEESCCCH
T ss_pred EEEEccCCH
Confidence 877544433
No 121
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=98.78 E-value=1.6e-08 Score=105.17 Aligned_cols=83 Identities=22% Similarity=0.239 Sum_probs=72.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCC-CEE-EEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYG-AAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g-~~v-~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~ 963 (993)
.+||||||++..+..+..+|+..| +.+ ..+.++.+|++.+. ...||+||+|+.||++||++++++||+.. ..|||+
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~-~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ 84 (215)
T 1a04_A 6 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE-SLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVV 84 (215)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHH-HHCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEE
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH-hcCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEE
Confidence 489999999999999999999864 887 68999999999985 46799999999999999999999999864 688888
Q ss_pred Ecccccc
Q 001941 964 WKLNLKI 970 (993)
Q Consensus 964 ~~~~~~~ 970 (993)
..-....
T Consensus 85 ls~~~~~ 91 (215)
T 1a04_A 85 FSVSNHE 91 (215)
T ss_dssp EECCCCH
T ss_pred EECCCCH
Confidence 7554433
No 122
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=98.76 E-value=1.4e-08 Score=96.61 Aligned_cols=78 Identities=18% Similarity=0.313 Sum_probs=70.0
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILVW 964 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~~ 964 (993)
..+|||||||+..+..+..+|+..|+.+..+.++.+|++.+. .. ||+||+|+.||+++|++++++||+.. ..|||+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-~~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 80 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSL-NK-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILI 80 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCC-CT-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhc-cC-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEE
Confidence 358999999999999999999999999999999999999885 45 99999999999999999999999754 5678776
Q ss_pred c
Q 001941 965 K 965 (993)
Q Consensus 965 ~ 965 (993)
.
T Consensus 81 s 81 (135)
T 3eqz_A 81 S 81 (135)
T ss_dssp E
T ss_pred E
Confidence 4
No 123
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=98.76 E-value=2.6e-08 Score=95.44 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=71.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCC-----CCCHHHHHHHHhcc-CCce
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMP-----EMDGYEMLPCFESF-LLIA 960 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP-----~mdG~e~~~~Ir~~-~~~~ 960 (993)
.+|||||||+..+..+...|+..||++..+.++.+|++.+. ...||+||+|+.|| +++|++++++||+. ..+|
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 82 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLR-EENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLP 82 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHH-HSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHH-cCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCC
Confidence 58999999999999999999999999999999999999995 46799999999999 99999999999986 4688
Q ss_pred EEEEccc
Q 001941 961 ILVWKLN 967 (993)
Q Consensus 961 ~~~~~~~ 967 (993)
||+..-.
T Consensus 83 ii~ls~~ 89 (140)
T 2qr3_A 83 VVLFTAY 89 (140)
T ss_dssp EEEEEEG
T ss_pred EEEEECC
Confidence 8887433
No 124
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=98.76 E-value=1.3e-08 Score=101.48 Aligned_cols=80 Identities=23% Similarity=0.235 Sum_probs=70.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCC-CE-EEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYG-AA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVW 964 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g-~~-v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~ 964 (993)
.+|||||||+..+..+..+|+..| +. +..+.++.+|++.+. ...||+||+|+.||++||++++++||+....|+|+.
T Consensus 26 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-~~~~dlvilD~~l~~~~g~~l~~~lr~~~~~~ii~~ 104 (164)
T 3t8y_A 26 IRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAI-ELKPDVITMDIEMPNLNGIEALKLIMKKAPTRVIMV 104 (164)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-HHCCSEEEECSSCSSSCHHHHHHHHHHHSCCEEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhc-cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEE
Confidence 589999999999999999999875 33 447999999999985 467999999999999999999999999988999887
Q ss_pred ccc
Q 001941 965 KLN 967 (993)
Q Consensus 965 ~~~ 967 (993)
.-.
T Consensus 105 s~~ 107 (164)
T 3t8y_A 105 SSL 107 (164)
T ss_dssp ESS
T ss_pred ecC
Confidence 543
No 125
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=98.75 E-value=3.7e-08 Score=96.39 Aligned_cols=83 Identities=23% Similarity=0.286 Sum_probs=73.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHh-CCCEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKR-YGAAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAIL 962 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~-~g~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~ 962 (993)
..+||||||++..+..+..+|+. .||.+. .+.++.+|++.+. ...||+||+|+.||+++|++++++||+.. .+|||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~-~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii 83 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYR-ETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARIL 83 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHH-TTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHh-cCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEE
Confidence 35899999999999999999998 799998 8999999999985 46799999999999999999999999864 67888
Q ss_pred EEccccc
Q 001941 963 VWKLNLK 969 (993)
Q Consensus 963 ~~~~~~~ 969 (993)
+..-...
T Consensus 84 ~ls~~~~ 90 (153)
T 3cz5_A 84 IFTMHQG 90 (153)
T ss_dssp EEESCCS
T ss_pred EEECCCC
Confidence 8754433
No 126
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=98.74 E-value=5.2e-09 Score=113.12 Aligned_cols=77 Identities=13% Similarity=0.219 Sum_probs=65.2
Q ss_pred CeEEEEeCChHHHHHHHHHHHh-CCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKR-YGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~-~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~~ 965 (993)
++||||||++..+..+...|.. .|+.+. +.++.+++..+. ...||+||+|++||+|||++++++||+. .+|||+-+
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~-~~~~~~~~~~~~-~~~~dlvllD~~mP~~~G~~~~~~lr~~-~~pvi~lt 81 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEID-AFDTLEGARHCQ-GDEYVVALVDLTLPDAPSGEAVKVLLER-GLPVVILT 81 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEE-EESSTGGGTTCC-TTTEEEEEEESCBTTBTTSHHHHHHHHT-TCCEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEE-EeChHHHHHHhh-cCCCcEEEEeCCCCCCCHHHHHHHHHhC-CCCEEEEE
Confidence 5899999999999999999976 477765 556777777664 4689999999999999999999999985 68998875
Q ss_pred c
Q 001941 966 L 966 (993)
Q Consensus 966 ~ 966 (993)
-
T Consensus 82 ~ 82 (259)
T 3luf_A 82 A 82 (259)
T ss_dssp C
T ss_pred c
Confidence 3
No 127
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.73 E-value=1.6e-08 Score=115.92 Aligned_cols=81 Identities=25% Similarity=0.413 Sum_probs=72.9
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEcc
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWKL 966 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~~ 966 (993)
+|||||||+..+..+..+|+..||+|..+.++.+|++.+. ...||+||+|++||+|||++++++||+. ..+|||+.+-
T Consensus 2 ~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-~~~~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvlT~ 80 (387)
T 1ny5_A 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS-EKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITG 80 (387)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHH-HSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeC
Confidence 6999999999999999999999999999999999999985 4679999999999999999999999975 4688988754
Q ss_pred ccc
Q 001941 967 NLK 969 (993)
Q Consensus 967 ~~~ 969 (993)
...
T Consensus 81 ~~~ 83 (387)
T 1ny5_A 81 HGT 83 (387)
T ss_dssp TTC
T ss_pred CCC
Confidence 443
No 128
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=98.71 E-value=1.5e-08 Score=106.52 Aligned_cols=85 Identities=9% Similarity=-0.017 Sum_probs=70.0
Q ss_pred CeEEEEeCChHHHHHHHHHHHh-CCCEEEE-EcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhc--cCCceEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKR-YGAAVVC-VERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFES--FLLIAIL 962 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~-~g~~v~~-a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~--~~~~~~~ 962 (993)
.+||||||++..+..+..+|+. .|+.+.. +.++.+++........||+||+|++||+|||++++++||+ ...+|||
T Consensus 8 ~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii 87 (225)
T 3klo_A 8 LNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEV 87 (225)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEE
T ss_pred eEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEE
Confidence 4899999999999999999994 6888865 4677777765323567999999999999999999999998 6789998
Q ss_pred EEcccccch
Q 001941 963 VWKLNLKIS 971 (993)
Q Consensus 963 ~~~~~~~~~ 971 (993)
+.+-.....
T Consensus 88 ~lt~~~~~~ 96 (225)
T 3klo_A 88 IINCPQDIE 96 (225)
T ss_dssp EEEECTTCC
T ss_pred EEECCcchh
Confidence 885544433
No 129
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=98.70 E-value=3.6e-08 Score=95.07 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=67.8
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhC-CCEE-EEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCce-EE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRY-GAAV-VCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIA-IL 962 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~-g~~v-~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~-~~ 962 (993)
..+||||||++..+..+...|+.. |+.+ ..+.++.+|++.+. ...||+||+|+.||+++|++++++||+....+ ||
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 87 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQ-HNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIV 87 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHH-HCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH-hCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEE
Confidence 358999999999999999999975 8884 58999999999985 46799999999999999999999999976654 55
Q ss_pred EE
Q 001941 963 VW 964 (993)
Q Consensus 963 ~~ 964 (993)
+.
T Consensus 88 ~~ 89 (143)
T 2qv0_A 88 FI 89 (143)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 130
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=98.70 E-value=9.6e-09 Score=115.60 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=72.4
Q ss_pred CeEEEEeCChHHHHHHHHHHH-hCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc---CCceEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLK-RYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF---LLIAIL 962 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~-~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~---~~~~~~ 962 (993)
.+||||||++..+..+...|. ..||.|..+.||.+|++.+. ...||+||+|+.||+|||+++++.||+. ..+|||
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~-~~~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ii 97 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVAN-QIKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPII 97 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHH-HHCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCEE
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCcEE
Confidence 369999999999999999996 46999999999999999985 4679999999999999999999999974 468998
Q ss_pred EEcccccc
Q 001941 963 VWKLNLKI 970 (993)
Q Consensus 963 ~~~~~~~~ 970 (993)
+.+-....
T Consensus 98 ~~s~~~~~ 105 (358)
T 3bre_A 98 VLSTKEEP 105 (358)
T ss_dssp EEESSCCH
T ss_pred EEeCCCCH
Confidence 87544443
No 131
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=98.66 E-value=2.1e-08 Score=105.43 Aligned_cols=80 Identities=20% Similarity=0.178 Sum_probs=70.4
Q ss_pred eEEEEeCChHHHHHHHHHHHhCC-CEEE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEE
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYG-AAVV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVW 964 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g-~~v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~ 964 (993)
+||||||++..+..+..+|+..| |.++ .+.++.+|++.+. ...||+||+|+.||++||++++++||+. ..+|||+.
T Consensus 3 ~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~-~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l 81 (225)
T 3c3w_A 3 KVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVP-AARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLIL 81 (225)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHH-HHCCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEG
T ss_pred EEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-hcCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEE
Confidence 79999999999999999999887 8854 7999999999985 4679999999999999999999999975 57899887
Q ss_pred cccc
Q 001941 965 KLNL 968 (993)
Q Consensus 965 ~~~~ 968 (993)
+-..
T Consensus 82 t~~~ 85 (225)
T 3c3w_A 82 TSYT 85 (225)
T ss_dssp GGSS
T ss_pred ECCC
Confidence 5443
No 132
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=98.66 E-value=3.4e-08 Score=111.50 Aligned_cols=78 Identities=19% Similarity=0.304 Sum_probs=71.4
Q ss_pred CeEEEEeCChHHHHHHHHHHHhC-CCE-EEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRY-GAA-VVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILVW 964 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~-g~~-v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~~ 964 (993)
.+||||||++..+..+..+|++. ||+ +..+.|+.+|++.+. ...||+|++|+.||+|||++++++||+...+|||+.
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~-~~~pDlVllDi~mp~~dGlell~~l~~~~p~pVIvl 82 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK-KFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMV 82 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-HHCCSEEEEECCCSSSCHHHHHHHHHHSSCCCEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHh-ccCCCEEEEECCCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 48999999999999999999986 898 569999999999985 467999999999999999999999999988999887
Q ss_pred c
Q 001941 965 K 965 (993)
Q Consensus 965 ~ 965 (993)
.
T Consensus 83 S 83 (349)
T 1a2o_A 83 S 83 (349)
T ss_dssp E
T ss_pred E
Confidence 4
No 133
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=98.64 E-value=1.1e-07 Score=91.02 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=71.1
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEE
Q 001941 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAIL 962 (993)
Q Consensus 884 l~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~ 962 (993)
..+.+||||||++..+..+..+|+..||++..+.++.+|++.+. ...||+|| ||+++|+++++.||+.. .+|||
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvi----~~~~~g~~~~~~l~~~~~~~~ii 90 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD-IRNYDLVM----VSDKNALSFVSRIKEKHSSIVVL 90 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-HSCCSEEE----ECSTTHHHHHHHHHHHSTTSEEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHH-cCCCCEEE----EcCccHHHHHHHHHhcCCCccEE
Confidence 34579999999999999999999999999999999999999985 46799999 99999999999999885 68998
Q ss_pred EEcccc
Q 001941 963 VWKLNL 968 (993)
Q Consensus 963 ~~~~~~ 968 (993)
+..-..
T Consensus 91 ~ls~~~ 96 (137)
T 2pln_A 91 VSSDNP 96 (137)
T ss_dssp EEESSC
T ss_pred EEeCCC
Confidence 874433
No 134
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=98.64 E-value=5.4e-08 Score=101.48 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=70.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
.+||||||++..+..+...|+..| .+..+.++.+|++.+ ..||+||+|+.||++||+++++.||+. ..+|||+.+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~---~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt 78 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE---EAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLT 78 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC---SCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEE
Confidence 379999999999999999999999 999999999999977 469999999999999999999999987 688998875
Q ss_pred cccc
Q 001941 966 LNLK 969 (993)
Q Consensus 966 ~~~~ 969 (993)
-...
T Consensus 79 ~~~~ 82 (220)
T 1p2f_A 79 LLSD 82 (220)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 4443
No 135
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=98.63 E-value=4.3e-08 Score=121.50 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=72.4
Q ss_pred eEEEEeCCh-HH-------HHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCC----CCHHHHHHHHhc
Q 001941 888 KILIVDDNN-VN-------LKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE----MDGYEMLPCFES 955 (993)
Q Consensus 888 ~ILIVdDn~-~n-------~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~----mdG~e~~~~Ir~ 955 (993)
+||||||+. .. ++.+...|++.||+|..+.||++|++.+.....||+||+|++||+ |||++++++||+
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~lp~~~~~~~G~~ll~~iR~ 81 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCCCCcccccccHHHHHHHHHH
Confidence 799999999 88 999999999999999999999999999964335999999999999 999999999999
Q ss_pred cC-CceEEEEcc
Q 001941 956 FL-LIAILVWKL 966 (993)
Q Consensus 956 ~~-~~~~~~~~~ 966 (993)
.. .+||++.+-
T Consensus 82 ~~~~iPIi~lTa 93 (755)
T 2vyc_A 82 RQQNVPVFLLGD 93 (755)
T ss_dssp HSTTCCEEEEEC
T ss_pred hCCCCCEEEEec
Confidence 86 799988743
No 136
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=98.61 E-value=6.6e-08 Score=94.56 Aligned_cols=80 Identities=21% Similarity=0.228 Sum_probs=64.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHhC-CC-EEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRY-GA-AVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~-g~-~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~ 963 (993)
.+||||||++..+..+...|+.. |+ .+..+.++.+|++.+.....||+||+|+.||+++|+++++.||+.. .+|||+
T Consensus 4 ~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 83 (154)
T 2qsj_A 4 TVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVAL 83 (154)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEE
Confidence 47999999999999999999987 88 7889999999999995316799999999999999999999999864 678887
Q ss_pred Ecc
Q 001941 964 WKL 966 (993)
Q Consensus 964 ~~~ 966 (993)
..-
T Consensus 84 ls~ 86 (154)
T 2qsj_A 84 ISG 86 (154)
T ss_dssp C--
T ss_pred EeC
Confidence 643
No 137
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=98.61 E-value=9.1e-09 Score=96.22 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=70.8
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEEEEc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAILVWK 965 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~~~~ 965 (993)
.+|||+||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+. ..+|+|+..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s 82 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA-SKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMT 82 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSS-SCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBC
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh-cCCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEe
Confidence 47999999999999999999999999999999999999985 4679999999999999999999999975 467887763
No 138
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=98.61 E-value=3.1e-08 Score=101.49 Aligned_cols=80 Identities=13% Similarity=0.026 Sum_probs=69.8
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhcc-CCceEE
Q 001941 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESF-LLIAIL 962 (993)
Q Consensus 884 l~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~-~~~~~~ 962 (993)
+.+.+||||||++..+..+...|+..||.+..+.++.+|+ ...||+||+|+.||+|||+ +++.+|+. ..+|||
T Consensus 10 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al-----~~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii 83 (196)
T 1qo0_D 10 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF-----DVPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLV 83 (196)
T ss_dssp GGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC-----SSCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEE
T ss_pred hcCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC-----CCCCCEEEEeCCCCccchH-HHHHHhccCCCCCEE
Confidence 3456899999999999999999999999999999988865 2469999999999999999 99999988 889998
Q ss_pred EEccccc
Q 001941 963 VWKLNLK 969 (993)
Q Consensus 963 ~~~~~~~ 969 (993)
+.+-...
T Consensus 84 ~lt~~~~ 90 (196)
T 1qo0_D 84 ALVEYES 90 (196)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 8854433
No 139
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=98.60 E-value=4.6e-08 Score=93.63 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=83.8
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
+.+|||||||++..+..++..|+.+|++|. +++++.+|++.+.. ..+|++++|..|+..++. ..++.+++..
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~--~~~DlvllDi~mP~~~G~---el~~~lr~~~-- 79 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARK--GQFDIAIIDVNLDGEPSY---PVADILAERN-- 79 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHH--CCSSEEEECSSSSSCCSH---HHHHHHHHTC--
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--CCCCEEEEecCCCCCCHH---HHHHHHHcCC--
Confidence 457999999999999999999999999985 78999999999876 469999999999765433 3456666532
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
.|.+++. +.+.... ....+...++.||++.++|.+.+.+++
T Consensus 80 -ipvI~lT--a~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 80 -VPFIFAT--GYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp -CSSCCBC--TTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred -CCEEEEe--cCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 2544433 2222111 122355679999999999998886543
No 140
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=98.50 E-value=3.5e-07 Score=90.06 Aligned_cols=120 Identities=11% Similarity=0.149 Sum_probs=88.7
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
...+||+|||++..+..++..|+..|+.+. .+.+..+|++.+......+|++++|..+...+ ....++.+++..+
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~---g~~~~~~lr~~~~- 110 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMD---GITCLSNIMEFDK- 110 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSC---HHHHHHHHHHHCT-
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCcc---HHHHHHHHHhhCC-
Confidence 357999999999999999999999999998 99999999999877544789999999876533 3346677776542
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
..++++++............ ..|...++.||+....+...+.+++
T Consensus 111 -~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 111 -NARVIMISALGKEQLVKDCL-IKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp -TCCEEEEESCCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred -CCcEEEEeccCcHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 22344444333322222222 2267789999999999999998765
No 141
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=98.49 E-value=2.7e-07 Score=96.30 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=68.7
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEEEcc
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILVWKL 966 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~~~~ 966 (993)
+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+|| ||++||+++++.||+.. .+|||+.+-
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-~~~~dlvi----lp~~~g~~~~~~lr~~~~~~~ii~lt~ 76 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD-IRNYDLVM----VSDKNALSFVSRIKEKHSSIVVLVSSD 76 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHT-TSCCSEEE----ECCTTHHHHHHHHHHHCTTSEEEEEES
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHh-cCCCCEEE----eCCCCHHHHHHHHHhCCCCCcEEEEEC
Confidence 6999999999999999999999999999999999999996 56899999 99999999999999886 789988754
Q ss_pred c
Q 001941 967 N 967 (993)
Q Consensus 967 ~ 967 (993)
.
T Consensus 77 ~ 77 (223)
T 2hqr_A 77 N 77 (223)
T ss_dssp S
T ss_pred C
Confidence 3
No 142
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=98.46 E-value=8.4e-07 Score=83.41 Aligned_cols=117 Identities=14% Similarity=0.187 Sum_probs=86.7
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC-
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ- 817 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~- 817 (993)
.+||+|||++..+..++..|+..|+.|..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++......
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~--~~~dlvllD~~~p~~~---g~~~~~~l~~~~~~~~~ 77 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE--FTPDLIVLXIMMPVMD---GFTVLKKLQEKEEWKRI 77 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT--BCCSEEEECSCCSSSC---HHHHHHHHHTSTTTTTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccCCCCc---HHHHHHHHHhcccccCC
Confidence 589999999999999999999999999999999999999865 4689999999886543 3346677776543333
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
|.+++. ........... ...|...++.||+....+...+.+.+
T Consensus 78 pii~~s-~~~~~~~~~~~-~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 78 PVIVLT-AKGGEEDESLA-LSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp CEEEEE-SCCSHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEe-cCCchHHHHHH-HhcChhhhccCCCCHHHHHHHHHHHh
Confidence 444433 32222222222 22367899999999999999988765
No 143
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=98.43 E-value=7.5e-07 Score=95.04 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=88.5
Q ss_pred eEEEEEEEEeCCCCCCCCccccccccCCCCCCCcccCCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhc
Q 001941 701 GSTFTFTAVFGNGSSTSNEHNSQQMNNQPNSVSSEFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIAS 780 (993)
Q Consensus 701 GStF~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~ 780 (993)
||+|++.+|+.....+.. ......+||+|||++..+..+...|+..|+.|..+.++.+|++.+..
T Consensus 1 Gs~~~~~~~~~~~~~~~~---------------~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~ 65 (250)
T 3r0j_A 1 GTHMRKGVDLVTAGTPGE---------------NTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE 65 (250)
T ss_dssp ----------------------------------CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred CCccccccceeeccCCCC---------------CCCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh
Confidence 899999998854322110 11234799999999999999999999999999999999999998865
Q ss_pred CCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHH
Q 001941 781 GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQR 860 (993)
Q Consensus 781 ~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~ 860 (993)
..+|++++|..++..+ ....++.+++..+ ..|.+++.+.. ........ -..|...++.||+...++.+.+..
T Consensus 66 --~~~dlvllD~~lp~~~---g~~~~~~lr~~~~-~~~ii~lt~~~-~~~~~~~~-~~~Ga~~yl~Kp~~~~~L~~~i~~ 137 (250)
T 3r0j_A 66 --TRPDAVILDVXMPGMD---GFGVLRRLRADGI-DAPALFLTARD-SLQDKIAG-LTLGGDDYVTKPFSLEEVVARLRV 137 (250)
T ss_dssp --HCCSEEEEESCCSSSC---HHHHHHHHHHTTC-CCCEEEEECST-THHHHHHH-HTSTTCEEEESSCCHHHHHHHHHH
T ss_pred --CCCCEEEEeCCCCCCC---HHHHHHHHHhcCC-CCCEEEEECCC-CHHHHHHH-HHcCCcEEEeCCCCHHHHHHHHHH
Confidence 3589999999886533 2346677776532 22444443322 22221122 223778999999999999999988
Q ss_pred Hhc
Q 001941 861 AMG 863 (993)
Q Consensus 861 ~l~ 863 (993)
++.
T Consensus 138 ~~~ 140 (250)
T 3r0j_A 138 ILR 140 (250)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 144
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=98.42 E-value=1.9e-06 Score=94.49 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=90.3
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEE-EecCHHHHHHHHhcCCCcccEEEEecccc-ccCccchHHHHHHHHhcCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~-~~~~~~~~~~~~~~~~~~~~ 815 (993)
+.++|+|||++..+.+++..|+..|+.|. .+.++.+|++.+... .+|++++|..|+ ..++... ++.+|+..
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~--~~dlvl~D~~MPd~mdG~e~---~~~ir~~~-- 232 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRR--TPGLVLADIQLADGSSGIDA---VKDILGRM-- 232 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHC--CCSEEEEESCCTTSCCTTTT---THHHHHHT--
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhC--CCCEEEEcCCCCCCCCHHHH---HHHHHhcC--
Confidence 46899999999999999999999999999 999999999998763 589999999998 5554443 45555544
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
..|.+++.+.+ . ..... ...|...++.||+....|.+.+..++..
T Consensus 233 ~~piI~lT~~~--~-~~~~~-~~~G~~~~l~KP~~~~~L~~~i~~~l~~ 277 (286)
T 3n0r_A 233 DVPVIFITAFP--E-RLLTG-ERPEPTFLITKPFQPETVKAAIGQALFF 277 (286)
T ss_dssp TCCEEEEESCG--G-GGCCS-SSCCCSSEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCH--H-HHHHH-HhCCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 23665555442 2 22222 2347889999999999999999998854
No 145
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=98.38 E-value=2.4e-06 Score=81.48 Aligned_cols=121 Identities=17% Similarity=0.286 Sum_probs=86.9
Q ss_pred cCCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhc-CC
Q 001941 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL-GC 814 (993)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~-~~ 814 (993)
+.+.+||+|||++..+..+...|+..|+.|..+.++.+|++.+... . |++++|..++..++ ...++.+++. ..
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~-dlvllD~~lp~~~g---~~~~~~l~~~~~~ 78 (136)
T 1dcf_A 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE--H-KVVFMDVCMPGVEN---YQIALRIHEKFTK 78 (136)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT--C-SEEEEECCSSTTTT---THHHHHHHHHHC-
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc--C-CEEEEeCCCCCCcH---HHHHHHHHHhhhh
Confidence 4578999999999999999999999999999999999999887543 3 99999998865443 2345566532 21
Q ss_pred C--CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 815 G--FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 815 ~--~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
. ..|.+++++............ ..|...++.||+....+...+.+++.
T Consensus 79 ~~~~~~~ii~~s~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 79 QRHQRPLLVALSGNTDKSTKEKCM-SFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp CCSCCCEEEEEESCCSHHHHHHHH-HTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred ccCCCceEEEEeCCCCHHHHHHHH-HcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 1 124455444333322222222 23678999999999999999988774
No 146
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=98.36 E-value=1.6e-06 Score=83.99 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=83.0
Q ss_pred cCCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcC--
Q 001941 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG-- 813 (993)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~-- 813 (993)
.++++||+|||++..+..++..|++.|+.+..+.++.+|++.+.. ..+|++++|..++..++ ...++.+++..
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~~~g---~~~~~~lr~~~~~ 86 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE--EDYDAVIVDLHMPGMNG---LDMLKQLRVMQAS 86 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCH---HHHHHHHHHHHHT
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCH---HHHHHHHHhchhc
Confidence 457899999999999999999999999999999999999998865 46899999998865443 33455555321
Q ss_pred CCCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 814 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 814 ~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
......+++++............ ..|...++.||+...++...+.+...
T Consensus 87 ~~~~~pii~~s~~~~~~~~~~~~-~~Ga~~~l~KP~~~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 87 GMRYTPVVVLSADVTPEAIRACE-QAGARAFLAKPVVAAKLLDTLADLAV 135 (143)
T ss_dssp TCCCCCEEEEESCCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHC-
T ss_pred cCCCCeEEEEeCCCCHHHHHHHH-HcChhheeeCCCCHHHHHHHHHHHHH
Confidence 11122333333322222222222 23678999999999999999987653
No 147
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.31 E-value=2.7e-07 Score=105.36 Aligned_cols=86 Identities=24% Similarity=0.368 Sum_probs=64.0
Q ss_pred EeCHHHHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCC
Q 001941 547 IGDPGRFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSP 626 (993)
Q Consensus 547 ~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (993)
.+|...+.+++.|+++||+++ ..+.|.|.+..
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~-~~~~I~V~i~~----------------------------------------------- 62 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG-YATEILVRLNE----------------------------------------------- 62 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-SCCEEEEEECT-----------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHhhhC-CCCEEEEEEEc-----------------------------------------------
Confidence 367889999999999999985 34566665420
Q ss_pred CCCCCCCceeEEEEEEEcCCCCChhhHhh--------ccCCccccCC----CCcCcCCCccchHHHHHHHHHHcC
Q 001941 627 FKSSSADLINLIVSVEDTGQGIPLEAQSR--------IFTPFMQVGP----SISRTHGGTGIGLSISKYLVGRMK 689 (993)
Q Consensus 627 ~~~~~~~~~~l~i~V~DtG~GI~~e~~~~--------IFepF~q~~~----s~s~~~~GtGLGLsI~k~LVe~mg 689 (993)
+. .|+|+|+|+|||++..++ +|.+|+..+. ......|+.|+||++|+.+++.+.
T Consensus 63 ------~~---~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~~ 128 (390)
T 1kij_A 63 ------DG---SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWTV 128 (390)
T ss_dssp ------TS---CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEEE
T ss_pred ------CC---EEEEEEcCCCCCHHHhhhccccchhhheeeeeecccccCccccccCCCCCcceeeecccccceE
Confidence 00 489999999999999888 9988876532 111234679999999999987643
No 148
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=98.31 E-value=2e-06 Score=81.41 Aligned_cols=122 Identities=16% Similarity=0.259 Sum_probs=86.6
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCE-EEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
.+++||+|||++..+..++..|++.|+. +..+.++.+|+..+... ..+|++++|..++..+ ....++.+++....
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~~~---g~~~~~~lr~~~~~ 79 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEMN---GLDLVKKVRSDSRF 79 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHC-TTCCEEEECSCCSSSC---HHHHHHHHHTSTTC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCC---HHHHHHHHHhcCCC
Confidence 4578999999999999999999999995 88999999999887653 3579999999886533 33466777765432
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
...++++++............ ..|...++.||+....+...+..+++
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~-~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 80 KEIPIIMITAEGGKAEVITAL-KAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp TTCCEEEEESCCSHHHHHHHH-HHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCChHHHHHHH-HcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 232333333322222111111 22678899999999999999998875
No 149
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=98.30 E-value=3.3e-06 Score=80.58 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=85.8
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCC-EEEEecCHHHHHHHHhc---CCCcccEEEEeccccccCccchHHHHHHHHhcCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIAS---GSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~-~v~~~~~~~~al~~l~~---~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 814 (993)
.+||+|||++..+..++..|+..|+ .+..+.++.+|++.+.. ....+|++++|..++..++ ...++.+++...
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G---~~~~~~lr~~~~ 79 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDG---LLSTKMIRRDLG 79 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCH---HHHHHHHHHHSC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCh---HHHHHHHHhhcC
Confidence 5899999999999999999999997 48899999999988764 2246899999999865432 345667775322
Q ss_pred CCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 815 ~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
...|.++ ++............ ..|...++.||+....+...+.+.+.
T Consensus 80 ~~~~ii~-lt~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 80 YTSPIVA-LTAFADDSNIKECL-ESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp CCSCEEE-EESCCSHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCCCEEE-EECCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 2224443 33322222111221 23678999999999999999988764
No 150
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=98.29 E-value=3.5e-06 Score=79.20 Aligned_cols=119 Identities=18% Similarity=0.205 Sum_probs=87.0
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
..+||+|||++..+..++..|++.|+.|..+.++.+|++.+... .+|++++|..+...+ ....++.+++......
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~---g~~~~~~l~~~~~~~~ 77 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTR--GYDAVFIDLNLPDTS---GLALVKQLRALPMEKT 77 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSB---HHHHHHHHHHSCCSSC
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHhhhccCC
Confidence 36899999999999999999999999999999999999998764 489999999876433 3446777777532333
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
..+++++....... ... ...|...++.||+....+.+.+....+
T Consensus 78 ~~ii~~s~~~~~~~-~~~-~~~g~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 78 SKFVAVSGFAKNDL-GKE-ACELFDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp CEEEEEECC-CTTC-CHH-HHHHCSEEEESSCCHHHHHHHHHHHC-
T ss_pred CCEEEEECCcchhH-HHH-HHHhhHHheeCCCCHHHHHHHHHHhhc
Confidence 34444433322222 111 122567899999999999999987664
No 151
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=98.29 E-value=2.5e-06 Score=81.71 Aligned_cols=120 Identities=15% Similarity=0.144 Sum_probs=87.9
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
..+||+|||++..+..++..|+..|+.|..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++......
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~---g~~~~~~lr~~~~~~~ 78 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYK--NLPDALICDVLLPGID---GYTLCKRVRQHPLTKT 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSC---HHHHHHHHHHSGGGTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCC---HHHHHHHHHcCCCcCC
Confidence 4689999999999999999999999999999999999998876 4589999999886543 2345677776432223
Q ss_pred -ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 818 -SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 818 -~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
|.+++.+. .......... ..|...++.||+....+...+.+++..
T Consensus 79 ~pii~~t~~-~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 79 LPILMLTAQ-GDISAKIAGF-EAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp CCEEEEECT-TCHHHHHHHH-HHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred ccEEEEecC-CCHHHHHHHH-hcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 44443332 2221111111 226778999999999999999988753
No 152
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=98.28 E-value=3.2e-06 Score=80.88 Aligned_cols=122 Identities=16% Similarity=0.282 Sum_probs=89.6
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
..+||+|||++..+..++..|+..|+.|..+.++.+|++.+... .+|++++|..+...+ ....++.+++......
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~~~~~ 80 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARR--PYAAMTVDLNLPDQD---GVSLIRALRRDSRTRD 80 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHS--CCSEEEECSCCSSSC---HHHHHHHHHTSGGGTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhCcccCC
Confidence 46899999999999999999999999999999999999998764 589999999876433 3446677776332223
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
..+++++...............|...++.||+....+...+.+++..
T Consensus 81 ~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 81 LAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp CEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 34444433322222220222337789999999999999999988853
No 153
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.27 E-value=1.8e-06 Score=96.68 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCC
Q 001941 552 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 631 (993)
Q Consensus 552 rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (993)
++.+++.||++||+++.. ..|.|.+. ..
T Consensus 24 ~~~~~v~ELi~NaidA~a-~~I~I~i~--~~------------------------------------------------- 51 (333)
T 1b63_A 24 RPASVVKELVENSLDAGA-TRIDIDIE--RG------------------------------------------------- 51 (333)
T ss_dssp SHHHHHHHHHHHHHHTTC-SEEEEEEE--GG-------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHCCC-CeEEEEEE--eC-------------------------------------------------
Confidence 678999999999999974 56655542 10
Q ss_pred CCceeEEEEEEEcCCCCChhhHhhccCCccccCCCC------cCcCCCccchHHHHHHHHHHcCCEEEEEEeCCC
Q 001941 632 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSI------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700 (993)
Q Consensus 632 ~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~------s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~ 700 (993)
....|+|.|+|+||++++++.+|++|++.+... ....|+.|+||+.+..+ +++.+.|....
T Consensus 52 ---~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~G~~G~gl~si~~v-----s~l~v~s~~~~ 118 (333)
T 1b63_A 52 ---GAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSV-----SRLTLTSRTAE 118 (333)
T ss_dssp ---GTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCCSSCHHHHHHTT-----SEEEEEEECTT
T ss_pred ---CceEEEEEEcCCCcCHHHHHHhhhcccccCccccchhhhccccCccccchhhhhcC-----CcEEEEEecCC
Confidence 012589999999999999999999998754221 12457799999987544 37899888644
No 154
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=98.25 E-value=1.1e-05 Score=77.34 Aligned_cols=120 Identities=16% Similarity=0.218 Sum_probs=86.5
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
.+.+||+|||++..+..++..|+..|+.|..+.++.+|+..+..+ ..+|++++|..++. .......++.+++. ..
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~--~~~g~~~~~~l~~~--~~ 78 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGE--GMDGVQTALAIQQI--SE 78 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSS--SCCHHHHHHHHHHH--CC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCC--CCCHHHHHHHHHhC--CC
Confidence 457999999999999999999999999999999999999988653 46899999988753 12233456666664 12
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.|.+ +++........... ...|...++.||+....+...+..++.
T Consensus 79 ~~ii-~ls~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 79 LPVV-FLTAHTEPAVVEKI-RSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp CCEE-EEESSSSCCCCGGG-GGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred CCEE-EEECCCCHHHHHHH-HhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 2433 34333222222222 223677899999999999999988875
No 155
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=98.24 E-value=2.3e-06 Score=82.05 Aligned_cols=123 Identities=12% Similarity=0.143 Sum_probs=88.9
Q ss_pred CceEEEeCCchhhHHHHHHHHHH-cCCEEEEecCHHHHHHHHhcCCCcccEEEEecccc-ccCccchHHHHHHHHhcCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQR-LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~-lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~-~~~~~~~~~~~~~~~~~~~~ 815 (993)
..+||+|||++..+..++..|+. .|++|..+.++.+|++.+... ..+|++++|..++ ..+ ....++.+++....
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~---g~~~~~~l~~~~~~ 79 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDL-DSITLIIMDIAFPVEKE---GLEVLSAIRNNSRT 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTC-CCCSEEEECSCSSSHHH---HHHHHHHHHHSGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCCCCc---HHHHHHHHHhCccc
Confidence 46899999999999999999999 999999999999999887653 5789999998875 322 34466777763222
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCC
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~ 865 (993)
...++++++............ ..|...++.||+....+...+..++...
T Consensus 80 ~~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 80 ANTPVIIATKSDNPGYRHAAL-KFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp TTCCEEEEESCCCHHHHHHHH-HSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred CCCCEEEEeCCCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 233344443332222222222 2367899999999999999999988543
No 156
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=98.24 E-value=5.3e-06 Score=81.23 Aligned_cols=121 Identities=17% Similarity=0.170 Sum_probs=89.2
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
+.+||+|||++..+..++..|+..|+.|..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++......
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~~~---g~~~~~~lr~~~~~~~ 81 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSL--TRPDLIISDVLMPEMD---GYALCRWLKGQPDLRT 81 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTT--CCCSEEEEESCCSSSC---HHHHHHHHHHSTTTTT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCC---HHHHHHHHHhCCCcCC
Confidence 5789999999999999999999999999999999999999865 4689999999886533 3346677777543223
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
..+++++............ ..|...++.||+....+...+..++..
T Consensus 82 ~pii~~s~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 82 IPVILLTILSDPRDVVRSL-ECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp SCEEEEECCCSHHHHHHHH-HHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHH-HCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 2333333322222221221 226788999999999999999988853
No 157
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.23 E-value=2.8e-06 Score=96.14 Aligned_cols=89 Identities=17% Similarity=0.116 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCC
Q 001941 552 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 631 (993)
Q Consensus 552 rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (993)
++.+++.||++||+++.. +.|.|.+. ..
T Consensus 34 ~~~~vl~eLv~NAiDA~a-~~I~I~i~--~~------------------------------------------------- 61 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAGA-TNIDLKLK--DY------------------------------------------------- 61 (365)
T ss_dssp CHHHHHHHHHHHHHHTTC-SEEEEEEE--GG-------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHCCC-CEEEEEEE--eC-------------------------------------------------
Confidence 578999999999999863 45655542 10
Q ss_pred CCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCc------CcCCCccchHHHHHHHHHHcCCEEEEEEeCCC
Q 001941 632 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700 (993)
Q Consensus 632 ~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s------~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~ 700 (993)
....|+|.|+|+|||+++++++|++|++.+.... ...|-.|+||+.+..+ . ++.+.|....
T Consensus 62 ---~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~G~rG~gl~si~~v----s-~v~v~t~~~~ 128 (365)
T 1h7s_A 62 ---GVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCAL----S-DVTISTCHAS 128 (365)
T ss_dssp ---GTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSEEESSSSSHHHHHHHH----S-EEEEEEECTT
T ss_pred ---CcEEEEEEECCCCcCHHHHHHHhhhccccccccccchhcccccCCCCchhhhhhhh----c-cEEEEEccCC
Confidence 0125899999999999999999999997643221 1123349999877655 3 7888887643
No 158
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=98.22 E-value=1.5e-05 Score=76.28 Aligned_cols=122 Identities=12% Similarity=0.120 Sum_probs=88.6
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
...+||+|||++..+..+...|+..|++|..+.+..+|++.+... .+|++++|..+...+ ....++.+++.....
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~~~ 80 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKG--FSGVVLLDIMMPGMD---GWDTIRAILDNSLEQ 80 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTC--CCEEEEEESCCSSSC---HHHHHHHHHHTTCCT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHhhcccC
Confidence 357899999999999999999999999999999999999998764 489999998875432 234667777632222
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
...+++++........... ...|...++.||+....+...+..++..
T Consensus 81 ~~pii~~s~~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 81 GIAIVMLTAKNAPDAKMIG-LQEYVVDYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp TEEEEEEECTTCCCCSSTT-GGGGEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHH-HhcCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 3334444333222222222 2236678999999999999999888753
No 159
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=98.22 E-value=5.2e-06 Score=77.56 Aligned_cols=115 Identities=19% Similarity=0.223 Sum_probs=84.8
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.++|+|||++..+..++..|++.|+.|..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++.. ..|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlii~D~~~p~~~---g~~~~~~lr~~~--~~~ 75 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE--LQPDLILLDIMLPNKD---GVEVCREVRKKY--DMP 75 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--TCCSEEEEETTSTTTH---HHHHHHHHHTTC--CSC
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCC---HHHHHHHHHhcC--CCC
Confidence 589999999999999999999999999999999999998865 4589999999886543 234566776532 224
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
.+++.+ .......... ...|...++.||+....+...+.+.+
T Consensus 76 ii~~t~-~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~l 117 (120)
T 3f6p_A 76 IIMLTA-KDSEIDKVIG-LEIGADDYVTKPFSTRELLARVKANL 117 (120)
T ss_dssp EEEEEE-SSCHHHHHHH-HHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred EEEEEC-CCChHHHHHH-HhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 444433 2222211111 12367899999999999999888765
No 160
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.22 E-value=3.9e-06 Score=93.89 Aligned_cols=89 Identities=19% Similarity=0.178 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCC
Q 001941 552 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 631 (993)
Q Consensus 552 rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (993)
++.+++.||+.||+++. .+.|.|.+. +.
T Consensus 28 ~~~~vv~eLv~NAidA~-a~~I~I~i~--~~------------------------------------------------- 55 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK-STSIQVIVK--EG------------------------------------------------- 55 (348)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--GG-------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHcC-CCEEEEEEE--eC-------------------------------------------------
Confidence 57799999999999995 456666542 10
Q ss_pred CCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCc------CcCCCccchHHHHHHHHHHcCCEEEEEEeCCC
Q 001941 632 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700 (993)
Q Consensus 632 ~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s------~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~ 700 (993)
....|+|.|+|+|||+++++++|+||++.+.... ...|-.|.||+-+..+. ++.+.|....
T Consensus 56 ---~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs-----~l~v~sr~~~ 122 (348)
T 3na3_A 56 ---GLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVA-----HVTITTKTAD 122 (348)
T ss_dssp ---GTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CCTTCHHHHHHHSS-----EEEEEEECTT
T ss_pred ---CEEEEEEEECCcCcChHHhhhhhccccccccCcchhhhccccCCcCChHHHHhhccc-----EEEEEEEECC
Confidence 0125899999999999999999999998764321 22345688887555442 6899887644
No 161
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=98.22 E-value=8.3e-06 Score=76.99 Aligned_cols=120 Identities=14% Similarity=0.163 Sum_probs=88.9
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
+.+||+|||++..+..++..|++.|+.|..+.++.+|++.+... .+|++++|..+...+ ....++.+++......
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~~~~ 80 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTF--EPAIMTLDLSMPKLD---GLDVIRSLRQNKVANQ 80 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT--CCSEEEEESCBTTBC---HHHHHHHHHTTTCSSC
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCC---HHHHHHHHHhcCccCC
Confidence 57999999999999999999999999999999999999988653 589999999876433 3446677777543233
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
+.++++...... ...... ..|...++.||+....+...+.+....
T Consensus 81 ~~ii~~~~~~~~-~~~~~~-~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 81 PKILVVSGLDKA-KLQQAV-TEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp CEEEEECCSCSH-HHHHHH-HHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred CeEEEEeCCChH-HHHHHH-HhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 555554433222 221222 226778999999999999999887753
No 162
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=98.21 E-value=6.2e-06 Score=78.23 Aligned_cols=122 Identities=14% Similarity=0.153 Sum_probs=89.4
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCC--EEEEecCHHHHHHHHhcCC-----CcccEEEEeccccccCccchHHHHHHHH
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASGS-----KIINMILVEQEVWEKDTSVSTLFVNNLR 810 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~--~v~~~~~~~~al~~l~~~~-----~~~~~ilid~~~~~~~~~~~~~~~~~~~ 810 (993)
+.+||+|||++..+..++..|+..|+ .|..+.++.+|++.+.... ..+|++++|..+...+ ....++.++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~---g~~~~~~l~ 78 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKD---GREVLAEIK 78 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSC---HHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCccc---HHHHHHHHH
Confidence 57899999999999999999999999 9999999999999987632 6799999998875432 344677777
Q ss_pred hcCCCCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 811 KLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 811 ~~~~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
+........+++++............ ..|...++.||+....+...+.+++.
T Consensus 79 ~~~~~~~~pii~ls~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 79 SDPTLKRIPVVVLSTSINEDDIFHSY-DLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp HSTTGGGSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cCcccccccEEEEecCCcHHHHHHHH-HhchhheecCCCCHHHHHHHHHHHHH
Confidence 75321233344443333222222222 23678899999999999999988774
No 163
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=98.21 E-value=7.5e-06 Score=79.64 Aligned_cols=123 Identities=11% Similarity=0.169 Sum_probs=89.3
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCC--EEEEecCHHHHHHHHhc-------CCCcccEEEEeccccccCccchHHHHHH
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIAS-------GSKIINMILVEQEVWEKDTSVSTLFVNN 808 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~--~v~~~~~~~~al~~l~~-------~~~~~~~ilid~~~~~~~~~~~~~~~~~ 808 (993)
..+||+|||++..+..++..|++.|+ .|..+.++.+|++.+.. ....+|++++|..++..+ ....++.
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~---g~~~~~~ 80 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMT---GIDILKL 80 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSB---HHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCc---HHHHHHH
Confidence 46899999999999999999999999 89999999999999862 346799999999886432 3446777
Q ss_pred HHhcCCCCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 809 LRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 809 ~~~~~~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
+++........+++++............ ..|...++.||+....+...+.++...
T Consensus 81 lr~~~~~~~~pii~~t~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~~~ 135 (152)
T 3heb_A 81 VKENPHTRRSPVVILTTTDDQREIQRCY-DLGANVYITKPVNYENFANAIRQLGLF 135 (152)
T ss_dssp HHHSTTTTTSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred HHhcccccCCCEEEEecCCCHHHHHHHH-HCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 7774333333334443332222222222 236789999999999999999888643
No 164
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=98.20 E-value=6e-06 Score=77.89 Aligned_cols=120 Identities=12% Similarity=0.247 Sum_probs=83.7
Q ss_pred cCCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
..+.+||+|||++..+..++..|+..|+.+..+.++.+|++.+.. ..+|++++|..+...+ ....++.+++..+
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~---g~~~~~~l~~~~~- 78 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG--FTPDLMICDIAMPRMN---GLKLLEHIRNRGD- 78 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTT--CCCSEEEECCC--------CHHHHHHHHHTTC-
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCC---HHHHHHHHHhcCC-
Confidence 356899999999999999999999999999999999999999854 4589999998876433 2345667776432
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCC-cchHHHHHHHHHhc
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMG 863 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl-~~~~l~~~l~~~l~ 863 (993)
..++++++............ ..|...++.||+ ....+...+..++.
T Consensus 79 -~~~ii~~t~~~~~~~~~~~~-~~g~~~~l~KP~~~~~~l~~~i~~~l~ 125 (130)
T 3eod_A 79 -QTPVLVISATENMADIAKAL-RLGVEDVLLKPVKDLNRLREMVFACLY 125 (130)
T ss_dssp -CCCEEEEECCCCHHHHHHHH-HHCCSEEEESCC---CHHHHHHHHHHC
T ss_pred -CCCEEEEEcCCCHHHHHHHH-HcCCCEEEeCCCCcHHHHHHHHHHHhc
Confidence 23344443333222211221 226778999999 88999999988874
No 165
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=98.20 E-value=4.2e-06 Score=80.30 Aligned_cols=124 Identities=11% Similarity=0.156 Sum_probs=90.8
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCC--EEEEecCHHHHHHHHhc---CCCcccEEEEeccccccCccchHHHHHHHHh
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIAS---GSKIINMILVEQEVWEKDTSVSTLFVNNLRK 811 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~--~v~~~~~~~~al~~l~~---~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 811 (993)
+..+||+|||++..+..+...|+..|+ .|..+.++.+|++.+.. ....+|++++|..++..+ ...+++.+++
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~---g~~~~~~l~~ 84 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGIN---GWELIDLFKQ 84 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSC---HHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCC---HHHHHHHHHH
Confidence 357899999999999999999999999 99999999999998865 236799999999886533 2345667776
Q ss_pred cC--CCCCceEEEEeccCCcccccccCCCCC-CCcccccCCcchHHHHHHHHHhcC
Q 001941 812 LG--CGFQSKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 812 ~~--~~~~~~~~lla~~~~~~~~~~~~~~~~-~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
.. ......+++++.............. | ...++.||+....|...+.+....
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~-g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 85 HFQPMKNKSIVCLLSSSLDPRDQAKAEAS-DWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp HCGGGTTTCEEEEECSSCCHHHHHHHHHC-SSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred hhhhccCCCeEEEEeCCCChHHHHHHHhc-CCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 32 2223344444433332222222222 4 788999999999999999988754
No 166
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=98.20 E-value=1.7e-05 Score=75.01 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=86.7
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
..+||+|||++..+..++..|+ .|+.+..+.++.+|++.+... .+|++++|..+...+ ....++.+++......
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~~~~~ 77 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAH--PPDVLISDVNMDGMD---GYALCGHFRSEPTLKH 77 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSC---HHHHHHHHHHSTTTTT
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCC---HHHHHHHHHhCCccCC
Confidence 3689999999999999999999 999999999999999998764 589999998875432 3446677777543323
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
..+++++....... . .....|...++.||+....+...+.+++..
T Consensus 78 ~pii~~s~~~~~~~-~-~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 78 IPVIFVSGYAPRTE-G-PADQPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp CCEEEEESCCC-------TTSCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHhH-H-HHhhcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 33444433222222 2 223336778999999999999999998854
No 167
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=98.15 E-value=9.3e-06 Score=77.21 Aligned_cols=122 Identities=11% Similarity=0.181 Sum_probs=89.2
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
..+||+|||++..+..++..|+..|++|..+.+..+|+..+... ..+|++++|..+...+ ....++.+++.. ...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~l~~~~---g~~~~~~l~~~~-~~~ 81 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ-KRIGLMITDLRMQPES---GLDLIRTIRASE-RAA 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSC---HHHHHHHHHTST-TTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC-CCCcEEEEeccCCCCC---HHHHHHHHHhcC-CCC
Confidence 46899999999999999999999999999999999999888663 3489999999876433 344667777753 223
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCC
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~ 865 (993)
.++++++............ ..|...++.||+....+...++++....
T Consensus 82 ~~ii~~s~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 82 LSIIVVSGDTDVEEAVDVM-HLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp CEEEEEESSCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred CCEEEEeCCCChHHHHHHH-hCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 3444444333322222222 2367899999999999999999988543
No 168
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=98.14 E-value=2.1e-05 Score=73.24 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=86.7
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEecccc-ccCccchHHHHHHHHhcCCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~-~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
.++|++||++..+..+...|++.|+++..+.++.+|++.+... .+|++++|..+. ..+ ....++.+++......
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~d~~~~~~~~---g~~~~~~l~~~~~~~~ 80 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRD--RPDLVVLAVDLSAGQN---GYLICGKLKKDDDLKN 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHH--CCSEEEEESBCGGGCB---HHHHHHHHHHSTTTTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhc--CCCEEEEeCCCCCCCC---HHHHHHHHhcCccccC
Confidence 5899999999999999999999999999999999999988663 589999998875 322 3346777777532223
Q ss_pred -ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 818 -SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 -~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
|.+++ . .......... ...|...++.||+....+...+..++.
T Consensus 81 ~~ii~~-~-~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 81 VPIVII-G-NPDGFAQHRK-LKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp SCEEEE-E-CGGGHHHHHH-STTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCEEEE-e-cCCchhHHHH-HHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 44444 3 3222222222 233778999999999999999988764
No 169
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=98.13 E-value=1.2e-05 Score=75.38 Aligned_cols=119 Identities=15% Similarity=0.269 Sum_probs=84.6
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCC-EEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~-~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
..++|++||++..+..++..|+..|+ .+..+.++.++++.+.. ..+|++++|..++..+ ....++.+++.....
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~---g~~l~~~l~~~~~~~ 78 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYGFVISDWNMPNMD---GLELLKTIRAXXAMS 78 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTT--CCCCEEEEESCCSSSC---HHHHHHHHHC--CCT
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh--cCCCEEEEeCCCCCCC---HHHHHHHHHhhcccC
Confidence 46899999999999999999999999 79999999999988865 4589999998876433 234667777643222
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
...+++++............ ..|...++.||+....+...+.+++
T Consensus 79 ~~~ii~~s~~~~~~~~~~~~-~~ga~~~l~KP~~~~~l~~~i~~~~ 123 (128)
T 1jbe_A 79 ALPVLMVTAEAKKENIIAAA-QAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp TCCEEEEESSCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCcEEEEecCccHHHHHHHH-HhCcCceeecCCCHHHHHHHHHHHH
Confidence 33333443322222221221 2367789999999999999888765
No 170
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=98.12 E-value=1.7e-05 Score=73.89 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=83.7
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.+||++||++..+..++..|+..|+.+..+.++.+|+..+.. ..+|++++|..++..+ ....++.+++.......
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~~ 76 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE--NKPDLILMDIQLPEIS---GLEVTKWLKEDDDLAHI 76 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--HCCSEEEEESBCSSSB---HHHHHHHHHHSTTTTTS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHcCccccCC
Confidence 479999999999999999999999999999999999988765 3589999998885433 23466777764322232
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++++............ ..|...++.||+....+...+..++.
T Consensus 77 ~ii~~s~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 77 PVVAVTAFAMKGDEERIR-EGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp CEEEEC------CHHHHH-HHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred cEEEEECCCCHHHHHHHH-hCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 333333222221111111 22677899999999999999987764
No 171
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=98.10 E-value=3e-05 Score=74.16 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=87.1
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC-
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ- 817 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~- 817 (993)
.+||+|||++..+..++..|+..|+.+..+.++.+|++.+... .+|++++|..++..+ ....++.+++......
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~~ 78 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNAT--PPDLVLLDIMMEPMD---GWETLERIKTDPATRDI 78 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHHSTTTTTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhcc--CCCEEEEeCCCCCCC---HHHHHHHHHcCcccCCC
Confidence 5899999999999999999999999999999999999988653 589999999886433 2346677776533223
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
|.+++.+.. . ........+.+...++.||+....+...+..++..
T Consensus 79 ~ii~ls~~~-~-~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 79 PVLMLTAKP-L-TPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp CEEEEESSC-C-CHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred CEEEEECCC-C-hHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 444443322 1 11112223335678999999999999999888753
No 172
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=98.10 E-value=1.2e-05 Score=86.17 Aligned_cols=121 Identities=20% Similarity=0.308 Sum_probs=89.2
Q ss_pred ccCCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCC
Q 001941 735 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814 (993)
Q Consensus 735 ~~~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 814 (993)
...+.+||+|||++..+..+...|+..|++|..+.++.+|++.+... .+|++++|..++..++ ...++.+++...
T Consensus 126 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~dlvl~D~~mp~~~G---~~l~~~ir~~~~ 200 (254)
T 2ayx_A 126 DNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN--HIDIVLSDVNMPNMDG---YRLTQRIRQLGL 200 (254)
T ss_dssp CCCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHS--CCSEEEEEESSCSSCC---HHHHHHHHHHHC
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCH---HHHHHHHHhcCC
Confidence 34578999999999999999999999999999999999999998764 5899999999875443 335566666432
Q ss_pred CCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 815 ~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
..|.+++.+..... ..... ...|...++.||+....+...+.+.+.
T Consensus 201 -~~piI~lt~~~~~~-~~~~~-~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 201 -TLPVIGVTANALAE-EKQRC-LESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp -CSCEEEEESSTTSH-HHHHH-HHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred -CCcEEEEECCCCHH-HHHHH-HHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 22444443332222 11122 223778999999999999999887663
No 173
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=98.10 E-value=1.3e-05 Score=76.91 Aligned_cols=119 Identities=13% Similarity=0.188 Sum_probs=89.1
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.+||+|||++..+..++..|+..|+.+..+.+..+|++.+......+|++++|..+...+ ....++.+++..+ ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~---g~~~~~~l~~~~~--~~ 78 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLS---GMDILREIKKITP--HM 78 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSC---HHHHHHHHHHHCT--TC
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCc---HHHHHHHHHHhCC--CC
Confidence 589999999999999999999999999999999999999886567899999998875432 3345667776532 23
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
++++++............ ..|...++.||+....+...+..++.
T Consensus 79 ~ii~ls~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 79 AVIILTGHGDLDNAILAM-KEGAFEYLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp EEEEEECTTCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCHHHHHHHH-HhCcceeEeCCCCHHHHHHHHHHHHH
Confidence 344444333322222222 22678899999999999999988875
No 174
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=98.10 E-value=1.3e-05 Score=76.93 Aligned_cols=123 Identities=17% Similarity=0.154 Sum_probs=89.2
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCC--EEEEecCHHHHHHHHhcCC--------CcccEEEEeccccccCccchHHHH
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASGS--------KIINMILVEQEVWEKDTSVSTLFV 806 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~--~v~~~~~~~~al~~l~~~~--------~~~~~ilid~~~~~~~~~~~~~~~ 806 (993)
.+.+||+|||++..+..++..|++.|+ .+..+.++.+|++.+.... ..+|++++|..+...+ ....+
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~---g~~~~ 81 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTD---GREVL 81 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSC---HHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCC---HHHHH
Confidence 457899999999999999999999999 8999999999999987632 5789999998875432 23466
Q ss_pred HHHHhcCCCCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 807 NNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 807 ~~~~~~~~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
+.+++........+++++............ ..|...++.||+....+...+..++.
T Consensus 82 ~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 82 QEIKQDEVLKKIPVVIMTTSSNPKDIEICY-SYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp HHHTTSTTGGGSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHhCcccCCCeEEEEeCCCCHHHHHHHH-HCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 777764321233344443332222222222 23678999999999999999988774
No 175
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=98.10 E-value=1.8e-05 Score=75.77 Aligned_cols=124 Identities=13% Similarity=0.184 Sum_probs=89.2
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCC--EEEEecCHHHHHHHHhcC----CCcccEEEEeccccccCccchHHHHHHHHh
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASG----SKIINMILVEQEVWEKDTSVSTLFVNNLRK 811 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~--~v~~~~~~~~al~~l~~~----~~~~~~ilid~~~~~~~~~~~~~~~~~~~~ 811 (993)
..+||+|||++..+..++..|++.|+ .|..+.++.+|++.+... ...+|++++|..+...+ ....++.+++
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~---g~~~~~~l~~ 83 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMN---GIEFLKELRD 83 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSC---HHHHHHHHTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCC---HHHHHHHHHc
Confidence 46899999999999999999999999 999999999999998752 25789999998875432 3346677776
Q ss_pred cCCCCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCC
Q 001941 812 LGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (993)
Q Consensus 812 ~~~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~ 865 (993)
........+++++........... ...|...++.||+....+...+....+.+
T Consensus 84 ~~~~~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~L~~~~~~~~~~~ 136 (143)
T 2qvg_A 84 DSSFTDIEVFVLTAAYTSKDKLAF-ESLNIRGHLIKPLDYGEAIKLFWILQSME 136 (143)
T ss_dssp SGGGTTCEEEEEESCCCHHHHHHH-TTTTCCEEEESSCCHHHHHHHHHHHHHC-
T ss_pred CccccCCcEEEEeCCCCHHHHHHH-HhcCCCeEEECCCCHHHHHHHHHHHHHhh
Confidence 432123334444433332222222 23377899999999999999988766544
No 176
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=98.09 E-value=9.9e-06 Score=74.36 Aligned_cols=67 Identities=16% Similarity=0.285 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001941 425 ELKKKAEAADVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQA 496 (993)
Q Consensus 425 el~~~ae~a~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~s 496 (993)
.+..+.++....+.+|++.+|||+|||++.|.+.++++.+ ...++.+.+..++.+|..++++++++.
T Consensus 48 ~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~-----~~~~~~~~i~~~~~~l~~~i~~ll~~~ 114 (114)
T 3zcc_A 48 RLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSE-----QDGYLAESINKDIEECNAIIEQFIDYL 114 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCG-----GGHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3334444555667789999999999999999999998753 234456899999999999999999873
No 177
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=98.08 E-value=2.1e-05 Score=75.03 Aligned_cols=122 Identities=6% Similarity=0.158 Sum_probs=88.4
Q ss_pred CCceEEEeCCchhhHHHHHHHHHH-cCCE-EEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQR-LGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~-lG~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 814 (993)
...+||++||++..+..++..|+. .|+. +..+.++.+|++.+... .+|++++|..+...+ ....++.+++...
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~ 81 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTV--KPDVVMLDLMMVGMD---GFSICHRIKSTPA 81 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHT--CCSEEEEETTCTTSC---HHHHHHHHHTSTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhc--CCCEEEEecccCCCc---HHHHHHHHHhCcc
Confidence 357899999999999999999999 9999 99999999999998764 489999998875432 3346677776432
Q ss_pred CCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 815 ~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
.....+++++............ ..|...++.||+....+...+..++..
T Consensus 82 ~~~~~ii~~s~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 82 TANIIVIAMTGALTDDNVSRIV-ALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp TTTSEEEEEESSCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEeCCCCHHHHHHHH-hcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 2233444444333322212222 236788999999999999999988854
No 178
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=98.07 E-value=3e-05 Score=74.18 Aligned_cols=116 Identities=16% Similarity=0.225 Sum_probs=84.6
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcC----
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG---- 813 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~---- 813 (993)
..+||++||++..+..++..|+..|+.+..+.++.+|++.+.. ..+|++++|..++..++ ...++.+++..
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~--~~~dlvllD~~lp~~~g---~~~~~~l~~~~~~~~ 84 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN--RQFDVIIMDIQMPVMDG---LEAVSEIRNYERTHN 84 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHH--SCCSEEEECTTCCSSCH---HHHHHHHHHHHHHHT
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCcH---HHHHHHHHhhhhhcC
Confidence 4589999999999999999999999999999999999998875 35899999998865432 33556666531
Q ss_pred CCCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 814 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 814 ~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
....+.+++. ........ ...|...++.||+....+...+..++.
T Consensus 85 ~~~~~ii~~s-~~~~~~~~----~~~g~~~~l~KP~~~~~L~~~i~~~~~ 129 (140)
T 3c97_A 85 TKRASIIAIT-ADTIDDDR----PGAELDEYVSKPLNPNQLRDVVLTCHS 129 (140)
T ss_dssp CCCCCCEEEE-SSCCSCCC----CCSSCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCceEEEEEe-CccchhHH----HhCChhheEeCCCCHHHHHHHHHHHhC
Confidence 1112333333 22211111 133677899999999999999998874
No 179
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=98.07 E-value=6.3e-06 Score=83.49 Aligned_cols=119 Identities=17% Similarity=0.197 Sum_probs=86.0
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
.+.+||+|||++..+..++..|+..|+.|..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++..+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~---g~~~~~~l~~~~~-- 78 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGA--EKFEFITVXLHLGNDS---GLSLIAPLCDLQP-- 78 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTT--SCCSEEEECSEETTEE---SHHHHHHHHHHCT--
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeccCCCcc---HHHHHHHHHhcCC--
Confidence 45799999999999999999999999999999999999999865 4589999999886543 2345667776432
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
..++++++............ ..|...++.||+....+...+..++.
T Consensus 79 ~~~ii~lt~~~~~~~~~~a~-~~Ga~~~l~KP~~~~~L~~~i~~~~~ 124 (184)
T 3rqi_A 79 DARILVLTGYASIATAVQAV-KDGADNYLAKPANVESILAALQTNAS 124 (184)
T ss_dssp TCEEEEEESSCCHHHHHHHH-HHTCSEEEESSCCHHHHHHHTSTTHH
T ss_pred CCCEEEEeCCCCHHHHHHHH-HhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 23333333322222121221 22678899999999999888876553
No 180
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.06 E-value=3.6e-06 Score=96.67 Aligned_cols=90 Identities=24% Similarity=0.239 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHHHHhcc----cCCeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCC
Q 001941 549 DPGRFRQIITNLMGNSIKFT----EKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGST 624 (993)
Q Consensus 549 D~~rL~QIL~NLL~NAiKfT----~~G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 624 (993)
+...+..++.+|+.||++|+ +.|.|.|.+....
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~------------------------------------------- 330 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAG------------------------------------------- 330 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECT-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcC-------------------------------------------
Confidence 34678999999999999998 3677777664210
Q ss_pred CCCCCCCCCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCCeEEE
Q 001941 625 SPFKSSSADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNIGSTF 704 (993)
Q Consensus 625 ~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~GStF 704 (993)
...+.++|.|+|+|+|+. + ..++.|+||.|++.+++.+ .+.+. +.|+++
T Consensus 331 ---------~~~l~i~V~D~G~g~~~~------------~-----~~~~~G~GL~lv~~l~~~~----~~~~~-~~G~~v 379 (399)
T 3ke6_A 331 ---------DGNVRASVIDRGQWKDHR------------D-----GARGRGRGLAMAEALVSEA----RIMHG-AGGTTA 379 (399)
T ss_dssp ---------TSEEEEEEEESCBC-----------------------------CHHHHHTTSSEE----EEEEE-TTEEEE
T ss_pred ---------CCEEEEEEEECCCCCCCC------------C-----CCCCCCcHHHHHHHHHHhe----eeEEC-CCcEEE
Confidence 124789999999999976 0 1246799999999988754 45554 579999
Q ss_pred EEEEEeCC
Q 001941 705 TFTAVFGN 712 (993)
Q Consensus 705 ~~~lp~~~ 712 (993)
++++|+..
T Consensus 380 ~~~~~~~~ 387 (399)
T 3ke6_A 380 TLTHRLSR 387 (399)
T ss_dssp EEEEECEE
T ss_pred EEEEEcCC
Confidence 99998753
No 181
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=98.06 E-value=1.3e-05 Score=77.30 Aligned_cols=122 Identities=13% Similarity=0.180 Sum_probs=88.8
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
.+.+||+|||++..+..+...|+..|+.|..+.++.+|+..+... .+|++++|..+...+ ....++.+++.....
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~~~~ 81 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKT--HPHLIITEANMPKIS---GMDLFNSLKKNPQTA 81 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSC---HHHHHHHHHTSTTTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcC--CCCEEEEcCCCCCCC---HHHHHHHHHcCcccC
Confidence 467999999999999999999999999999999999999988764 589999998875432 244677777632222
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
...+++++............ ..|...++.||+....+...+..++..
T Consensus 82 ~~pii~ls~~~~~~~~~~~~-~~g~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 82 SIPVIALSGRATAKEEAQLL-DMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp TSCEEEEESSCCHHHHHHHH-HHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHH-hCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 33344444332222211111 236778999999999999999888754
No 182
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=98.05 E-value=1.7e-05 Score=76.18 Aligned_cols=122 Identities=18% Similarity=0.281 Sum_probs=89.0
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCE--EEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQ--VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~--v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 814 (993)
...+||+|||++..+..++..|++.|+. +..+.++.+|++.+.. ..+|++++|..+...+ ....++.+++...
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~---g~~~~~~lr~~~~ 78 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ--AKYDLIILDIGLPIAN---GFEVMSAVRKPGA 78 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT--CCCSEEEECTTCGGGC---HHHHHHHHHSSST
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhccc
Confidence 3579999999999999999999999998 8899999999999865 4689999998876432 3446677776433
Q ss_pred CCCceEEEEeccCCcccccccCCCCCCCcccccCC-cchHHHHHHHHHhcC
Q 001941 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMGV 864 (993)
Q Consensus 815 ~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl-~~~~l~~~l~~~l~~ 864 (993)
.....+++++............ ..|...++.||+ ....+...+..++..
T Consensus 79 ~~~~pii~~s~~~~~~~~~~~~-~~ga~~~l~Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 79 NQHTPIVILTDNVSDDRAKQCM-AAGASSVVDKSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp TTTCCEEEEETTCCHHHHHHHH-HTTCSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHH-HcCCCEEEECCCCcHHHHHHHHHHHHHH
Confidence 2333344444333322222222 237789999999 999999999888754
No 183
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=98.05 E-value=9.7e-06 Score=78.17 Aligned_cols=125 Identities=15% Similarity=0.169 Sum_probs=88.7
Q ss_pred cccCCceEEEeCCchhhHHHHHHHHHHcC-CEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhc
Q 001941 734 SEFQGMKALVVDPRPIRAKVSRYHIQRLG-IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKL 812 (993)
Q Consensus 734 ~~~~g~rvLvvdd~~~~~~v~~~~L~~lG-~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~ 812 (993)
....+.+||+|||++..+..++..|+..| +.|..+.+..+++..+......+|++++|..+...+ ....++.+++.
T Consensus 16 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~---g~~~~~~l~~~ 92 (146)
T 4dad_A 16 YFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTA---ELAAIEKLSRL 92 (146)
T ss_dssp CCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHH---HHHHHHHHHHH
T ss_pred CcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCcc---HHHHHHHHHHh
Confidence 33457899999999999999999999999 999999999988876543214689999999875432 23456677765
Q ss_pred CCCCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 813 GCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 813 ~~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
.+ ...+++++............ ..|...++.||+....|...+..++..
T Consensus 93 ~~--~~~ii~lt~~~~~~~~~~~~-~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 93 HP--GLTCLLVTTDASSQTLLDAM-RAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp CT--TCEEEEEESCCCHHHHHHHH-TTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred CC--CCcEEEEeCCCCHHHHHHHH-HhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 32 23344443332222222222 236778999999999999999988753
No 184
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=98.04 E-value=2e-05 Score=73.62 Aligned_cols=119 Identities=16% Similarity=0.182 Sum_probs=85.8
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.++|++||++..+..++..|+..|+.+..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++.......
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~~ 77 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLAWMLPGGS---GIQFIKHLRRESMTRDI 77 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSS--SCCSEEEEESEETTEE---HHHHHHHHHTSTTTTTS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCC---HHHHHHHHHhCcccCCC
Confidence 589999999999999999999999999999999999987654 4689999998875432 34467777765322233
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++++........... ...|...++.||+....+...+..++.
T Consensus 78 ~ii~~s~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 78 PVVMLTARGEEEDRVRG-LETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp CEEEEEETTHHHHHHTT-CCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHH-HhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 33333332222222222 223778999999999999999988764
No 185
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=98.04 E-value=2.8e-05 Score=75.69 Aligned_cols=121 Identities=12% Similarity=0.239 Sum_probs=87.3
Q ss_pred cCCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
.++.+||+|||++..+..+...|+..|+.|..+.++.+|+..+... .+|++++|..+...+ ....++.+++..+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~~- 78 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGT--SVQLVISDMRMPEMG---GEVFLEQVAKSYP- 78 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTS--CCSEEEEESSCSSSC---HHHHHHHHHHHCT-
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCC---HHHHHHHHHHhCC-
Confidence 3568999999999999999999999999999999999999998764 489999998875432 2345667766432
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
...+++++...............+...++.||+....+...+..++.
T Consensus 79 -~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 79 -DIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp -TSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred -CCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHH
Confidence 23333443322222221221221377899999999999999888774
No 186
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=98.04 E-value=2.9e-05 Score=75.38 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=87.8
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCC--EEEEecCHHHHHHHHhcC-----CCcccEEEEeccccccCccchHHHHHHHH
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGI--QVEVVSDQLQCLSQIASG-----SKIINMILVEQEVWEKDTSVSTLFVNNLR 810 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~--~v~~~~~~~~al~~l~~~-----~~~~~~ilid~~~~~~~~~~~~~~~~~~~ 810 (993)
..+||+|||++..+..++..|+..|+ .|..+.++.+|++.+... ...+|++++|..++..+ ....++.++
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~---g~~l~~~l~ 84 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKD---GREVLAEIK 84 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSC---HHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCc---HHHHHHHHH
Confidence 46899999999999999999999987 899999999999998753 24689999999886533 234667777
Q ss_pred hcCCCCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 811 KLGCGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 811 ~~~~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
+........+++++............ ..|...++.||+....+...+..+..
T Consensus 85 ~~~~~~~~piiils~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 85 QNPDLKRIPVVVLTTSHNEDDVIASY-ELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp HCTTTTTSCEEEEESCCCHHHHHHHH-HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred hCcCcCCCeEEEEECCCChHHHHHHH-HcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 75322232333343332222222222 23678999999999999999988764
No 187
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=98.03 E-value=1.2e-05 Score=75.44 Aligned_cols=120 Identities=16% Similarity=0.256 Sum_probs=85.7
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCC-EEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~-~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
..++|++||++..+..++..|+..|+ .+..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++.....
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~---g~~~~~~l~~~~~~~ 80 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ--NPHHLVISDFNMPKMD---GLGLLQAVRANPATK 80 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHT--SCCSEEEECSSSCSSC---HHHHHHHHTTCTTST
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHc--CCCCEEEEeCCCCCCC---HHHHHHHHhcCcccc
Confidence 46899999999999999999999999 89999999999998865 3589999998876433 234567777643222
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
...+++++............ ..|...++.||+....+...+..++.
T Consensus 81 ~~~ii~~s~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 81 KAAFIILTAQGDRALVQKAA-ALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp TCEEEECCSCCCHHHHHHHH-HHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 33344443322222111111 22677899999999999999887653
No 188
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=98.03 E-value=3.8e-05 Score=73.37 Aligned_cols=118 Identities=13% Similarity=0.148 Sum_probs=82.8
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.+||+|||++..+..+...|+.. +.|..+.++.+|++.+... .+|++++|..+...++ ...++.+++.......
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~ 77 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHH--HPDLVILDMDIIGENS---PNLCLKLKRSKGLKNV 77 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHH--CCSEEEEETTC---------CHHHHHHTSTTCTTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcH---HHHHHHHHcCcccCCC
Confidence 68999999999999999999999 9999999999999998663 5899999998765432 2355667765432233
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++++........... ...|...++.||+....+...+..++.
T Consensus 78 ~ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 78 PLILLFSSEHKEAIVNG-LHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp CEEEEECC----CTTTT-TTCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHH-HhcCCCeeeeCCCCHHHHHHHHHHHHh
Confidence 34444333222222222 233778999999999999999988774
No 189
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=98.02 E-value=5.9e-06 Score=78.90 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=87.5
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
..+||+|||++..+..+...|+..|++|..+.++.+|++.+.. ..+|++++|..++.... .....++.+++.. ..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~~-~g~~~~~~l~~~~--~~ 80 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQIS--DDAIGMIIEAHLEDKKD-SGIELLETLVKRG--FH 80 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCC--TTEEEEEEETTGGGBTT-HHHHHHHHHHHTT--CC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEeCcCCCCCc-cHHHHHHHHHhCC--CC
Confidence 3689999999999999999999999999999999999987754 45999999988754102 2334667777754 12
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCC
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~ 865 (993)
.++++++............ ..|...++.||+....+...+.++....
T Consensus 81 ~~ii~~s~~~~~~~~~~~~-~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 127 (136)
T 3kto_A 81 LPTIVMASSSDIPTAVRAM-RASAADFIEKPFIEHVLVHDVQQIINGA 127 (136)
T ss_dssp CCEEEEESSCCHHHHHHHH-HTTCSEEEESSBCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHH-HcChHHheeCCCCHHHHHHHHHHHHhcc
Confidence 2333343322222121222 2367889999999999999999888543
No 190
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=98.01 E-value=3.5e-05 Score=71.31 Aligned_cols=116 Identities=19% Similarity=0.205 Sum_probs=83.9
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
+++|++||++..+..+...|+..|+.+..+.++.+|+..+... .+|++++|..++..+ ....++.+++..+ ..|
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~---g~~~~~~l~~~~~-~~~ 74 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEH--IPDIAIVDLGLPDED---GLSLIRRWRSNDV-SLP 74 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSC---HHHHHHHHHHTTC-CSC
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCC---HHHHHHHHHhcCC-CCC
Confidence 3799999999999999999999999999999999999988764 589999998876433 2345667775432 224
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
.++ ++............ ..|...++.||+....+...+..++
T Consensus 75 ii~-~s~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~i~~~~ 116 (121)
T 2pl1_A 75 ILV-LTARESWQDKVEVL-SAGADDYVTKPFHIEEVMARMQALM 116 (121)
T ss_dssp EEE-EESCCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEE-EecCCCHHHHHHHH-HcCccceEECCCCHHHHHHHHHHHH
Confidence 443 33322222111111 2367789999999999999888765
No 191
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=98.01 E-value=2.3e-05 Score=76.29 Aligned_cols=119 Identities=15% Similarity=0.198 Sum_probs=88.2
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
...+||+|||++..+..+...|+..|+.|..+.++.+|++.+... .+|++++|..+...+ ....++.+++..+
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~---g~~~~~~l~~~~~-- 85 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASR--EVDLVISAAHLPQMD---GPTLLARIHQQYP-- 85 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSC---HHHHHHHHHHHCT--
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcC--CCCEEEEeCCCCcCc---HHHHHHHHHhHCC--
Confidence 457999999999999999999999999999999999999998764 589999999886433 2345666766432
Q ss_pred CceEEEEeccCCcccccccCCCCC-CCcccccCCcchHHHHHHHHHhc
Q 001941 817 QSKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~-~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
...+++++.............. | ...++.||+....+...+..++.
T Consensus 86 ~~~ii~~s~~~~~~~~~~~~~~-g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 86 STTRILLTGDPDLKLIAKAINE-GEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp TSEEEEECCCCCHHHHHHHHHT-TCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHHHHHHhC-CCcceEEeCCCCHHHHHHHHHHHHH
Confidence 2334444433322222222222 5 77899999999999999988875
No 192
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=98.01 E-value=4.9e-05 Score=69.87 Aligned_cols=114 Identities=17% Similarity=0.269 Sum_probs=82.9
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.++|++||++..+..++..|+..|+.+..+.++.+|++.+... .+|++++|..++..+ ....++.+++..+ ..
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~~--~~ 74 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSG--NYDLVILDIEMPGIS---GLEVAGEIRKKKK--DA 74 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSC---HHHHHHHHHHHCT--TC
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCC---HHHHHHHHHccCC--CC
Confidence 3799999999999999999999999999999999999988663 589999998875433 2345667766532 22
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
.+++++..... .. .....|...++.||+....+...+.+++
T Consensus 75 ~ii~~s~~~~~-~~--~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 75 KIILLTAYSHY-RS--DMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp CEEEEESCGGG-GG--CGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred eEEEEECCcch-HH--HHHhccccceEECCCCHHHHHHHHHHHh
Confidence 33333332221 11 1222366789999999999988887654
No 193
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=98.00 E-value=6.2e-06 Score=78.55 Aligned_cols=118 Identities=10% Similarity=0.043 Sum_probs=85.3
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcC-CEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLG-IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG-~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
..+||+|||++..+..++..|+..| +.|..+.++.+|++.+.. ..+|++++|..++..++. ..++.+++..+ .
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~-~ 87 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPAD--TRPGIVILDLGGGDLLGK---PGIVEARALWA-T 87 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTT--CCCSEEEEEEETTGGGGS---TTHHHHHGGGT-T
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhc--cCCCEEEEeCCCCCchHH---HHHHHHHhhCC-C
Confidence 4689999999999999999999999 999999999999877643 568999999988654332 34566666543 2
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.|.++ ++............ ..|...++.||+....+...+.+++.
T Consensus 88 ~~ii~-~s~~~~~~~~~~~~-~~g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 88 VPLIA-VSDELTSEQTRVLV-RMNASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp CCEEE-EESCCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHTC-
T ss_pred CcEEE-EeCCCCHHHHHHHH-HcCcHhhccCCCCHHHHHHHHHHHhc
Confidence 24443 33322222222222 23678899999999999999987663
No 194
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=97.99 E-value=4.5e-05 Score=71.43 Aligned_cols=118 Identities=13% Similarity=0.148 Sum_probs=85.7
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
+.++|++||++..+..++..|+..|+.+..+.++.++++.+.. ..+|++++|..++..+ ....++.+++..+ .
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~~~---g~~~~~~l~~~~~--~ 75 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPD--VRNGVLVTDLRMPDMS---GVELLRNLGDLKI--N 75 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGG--CCSEEEEEECCSTTSC---HHHHHHHHHHTTC--C
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEECCCCCCC---HHHHHHHHHhcCC--C
Confidence 4689999999999999999999999999999999999988765 3579999998876433 2345667776432 2
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.++++++............ ..|...++.||+....+...+..++.
T Consensus 76 ~~ii~~s~~~~~~~~~~~~-~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 76 IPSIVITGHGDVPMAVEAM-KAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp CCEEEEECTTCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHH-HhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 2333333322222222222 22677999999999999999988764
No 195
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=97.97 E-value=2e-05 Score=74.93 Aligned_cols=118 Identities=10% Similarity=0.062 Sum_probs=87.7
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
..+||+|||++..+..+...|+..|+.+..+.++.+|++.+... .+|++++|..+...+ ....++.+++..+ .
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~~--~ 79 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLH--APDVIITDIRMPKLG---GLEMLDRIKAGGA--K 79 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHTTC--C
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCC---HHHHHHHHHhcCC--C
Confidence 47899999999999999999999999999999999999998663 589999998875432 3346677776531 2
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
..+++++........... ...|...++.||+....+...+.+++.
T Consensus 80 ~~ii~~s~~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (137)
T 3hdg_A 80 PYVIVISAFSEMKYFIKA-IELGVHLFLPKPIEPGRLMETLEDFRH 124 (137)
T ss_dssp CEEEECCCCCCHHHHHHH-HHHCCSEECCSSCCHHHHHHHHHHHHH
T ss_pred CcEEEEecCcChHHHHHH-HhCCcceeEcCCCCHHHHHHHHHHHHH
Confidence 334444333222222122 223677899999999999999998875
No 196
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=97.97 E-value=2.7e-05 Score=72.10 Aligned_cols=117 Identities=12% Similarity=0.189 Sum_probs=83.4
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCE-EEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
+.++|++||++..+..++..|+..|+. +..+.++.+|++.+... .+|++++|..++..+ ....++.+++..+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~---g~~~~~~l~~~~~-- 74 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL--KPDIVTMDITMPEMN---GIDAIKEIMKIDP-- 74 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEECSCGGGC---HHHHHHHHHHHCT--
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCc---HHHHHHHHHhhCC--
Confidence 468999999999999999999999999 56899999999988653 589999999886433 2345667766532
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
..++++++............ ..|...++.||+....+...+.+++
T Consensus 75 ~~~ii~~s~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 75 NAKIIVCSAMGQQAMVIEAI-KAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp TCCEEEEECTTCHHHHHHHH-HTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCHHHHHHHH-HhCcceeEeCCCCHHHHHHHHHHHh
Confidence 22344443332222211221 2367789999999999988887653
No 197
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=97.96 E-value=3e-05 Score=72.32 Aligned_cols=117 Identities=12% Similarity=0.172 Sum_probs=84.8
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.+||+|||++..+..++..|+..|+.+..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++..+ ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~---g~~~~~~l~~~~~--~~ 76 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK--ERPDLVLLDMKIPGMD---GIEILKRMKVIDE--NI 76 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCTTCC---HHHHHHHHHHHCT--TC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCC---HHHHHHHHHHhCC--CC
Confidence 589999999999999999999999999999999999998865 3589999999876433 2345666766422 23
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++++............ ..|...++.||+....+...+.+++.
T Consensus 77 ~ii~~s~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 77 RVIIMTAYGELDMIQESK-ELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EEEEEESSCCHHHHHHHH-HHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred CEEEEEccCchHHHHHHH-hcChHhhccCCCCHHHHHHHHHHHhc
Confidence 344443322222211111 22677899999999999999987763
No 198
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=97.96 E-value=2.8e-05 Score=73.46 Aligned_cols=118 Identities=9% Similarity=0.193 Sum_probs=86.4
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
.+||++||++..+..++..|++.|+.+. .+.++.+|++.+.. ..+|++++|..++..+ ....++.+++..+ .
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~--~~~dlii~d~~l~~~~---g~~~~~~l~~~~~--~ 74 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVN---GIQVLETLRKRQY--S 74 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHH--HCCSEEEEETTCSSSC---HHHHHHHHHHTTC--C
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHh--cCCCEEEEecCCCCCC---hHHHHHHHHhcCC--C
Confidence 5899999999999999999999999998 89999999988866 3589999999885533 3346677776532 2
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
.++++++............ ..|...++.||+....+...+..++..
T Consensus 75 ~~ii~~s~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 75 GIIIIVSAKNDHFYGKHCA-DAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp SEEEEEECC---CTHHHHH-HTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCChHHHHHHH-HhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 3344444333222222222 236788999999999999999998853
No 199
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=97.96 E-value=3.5e-05 Score=70.39 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=84.1
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
+.+||++||++..+..+...|+..|+++..+.+..+++..+... .+|++++|..+...+ ....++.+++......
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~--~~dlii~d~~~~~~~---~~~~~~~l~~~~~~~~ 75 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLL--QPIVILMAWPPPDQS---CLLLLQHLREHQADPH 75 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEECSTTCCT---HHHHHHHHHHTCCCSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhc--CCCEEEEecCCCCCC---HHHHHHHHHhccccCC
Confidence 36899999999999999999999999999999999999988664 589999998775322 3446777777542223
Q ss_pred -ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 818 -SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 818 -~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
|.+++ +...... .. ...|...++.||+....+...+..++
T Consensus 76 ~~ii~~-~~~~~~~---~~-~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 76 PPLVLF-LGEPPVD---PL-LTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp CCCEEE-ESSCCSS---HH-HHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred CCEEEE-eCCCCch---hh-hhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 44443 3322221 11 12256789999999999999887654
No 200
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=97.94 E-value=4.3e-05 Score=71.03 Aligned_cols=115 Identities=15% Similarity=0.206 Sum_probs=83.5
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.++|++||++..+..++..|+..|+.+..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++. . ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~---g~~~~~~l~~~--~-~~ 75 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--YDINLVIMDINLPGKN---GLLLARELREQ--A-NV 75 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--SCCSEEEECSSCSSSC---HHHHHHHHHHH--C-CC
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCC---HHHHHHHHHhC--C-CC
Confidence 479999999999999999999999999999999999998865 3589999998876433 23456677665 1 23
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
.+++++............ ..|...++.||+....+...+..++
T Consensus 76 ~ii~~s~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~ 118 (123)
T 1xhf_A 76 ALMFLTGRDNEVDKILGL-EIGADDYITKPFNPRELTIRARNLL 118 (123)
T ss_dssp EEEEEESCCSHHHHHHHH-HHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cEEEEECCCChHHHHHHH-hcCcceEEeCCCCHHHHHHHHHHHH
Confidence 333343322222111111 2267789999999999998887765
No 201
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=97.94 E-value=2.5e-05 Score=74.61 Aligned_cols=117 Identities=14% Similarity=0.199 Sum_probs=85.7
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
..++|++||++..+..+...|+..|+.|..+.++.+|++.+... .+|++++|..++..+ ....++.+++.. ..
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~---g~~l~~~l~~~~--~~ 76 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSN--KYDLIFLEIILSDGD---GWTLCKKIRNVT--TC 76 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC--CCSEEEEESEETTEE---HHHHHHHHHTTC--CC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHccCC--CC
Confidence 35899999999999999999999999999999999999988663 589999998875432 234667777643 22
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
|.+ +++............ ..|...++.||+....+...+..++.
T Consensus 77 ~ii-~ls~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 77 PIV-YMTYINEDQSILNAL-NSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp CEE-EEESCCCHHHHHHHH-HTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CEE-EEEcCCCHHHHHHHH-HcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 443 333322222111111 23678999999999999999988774
No 202
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=97.94 E-value=4.9e-05 Score=73.70 Aligned_cols=119 Identities=10% Similarity=0.130 Sum_probs=87.8
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcC--CEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLG--IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG--~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 814 (993)
..++||+|||++..+..++..|+..| +.+..+.+..+|++.+.. ..+|++++|..+...+ ....++.+++..+
T Consensus 19 ~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~~~---g~~~~~~l~~~~~ 93 (150)
T 4e7p_A 19 SHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEK--ESVDIAILDVEMPVKT---GLEVLEWIRSEKL 93 (150)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTT--SCCSEEEECSSCSSSC---HHHHHHHHHHTTC
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhc--cCCCEEEEeCCCCCCc---HHHHHHHHHHhCC
Confidence 45799999999999999999999998 889999999999999865 4589999999875433 3346677776531
Q ss_pred CCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 815 ~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
..++++++............ ..|...++.||+....+...+.+++.
T Consensus 94 --~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~Kp~~~~~l~~~i~~~~~ 139 (150)
T 4e7p_A 94 --ETKVVVVTTFKRAGYFERAV-KAGVDAYVLKERSIADLMQTLHTVLE 139 (150)
T ss_dssp --SCEEEEEESCCCHHHHHHHH-HTTCSEEEETTSCHHHHHHHHHHHHT
T ss_pred --CCeEEEEeCCCCHHHHHHHH-HCCCcEEEecCCCHHHHHHHHHHHHc
Confidence 23444444333322222222 23678999999999999999998875
No 203
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=97.94 E-value=4.5e-05 Score=72.51 Aligned_cols=119 Identities=16% Similarity=0.140 Sum_probs=86.7
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCEEE-EecCHHHHHHHHhcCCCcccEEEEecccc-ccCccchHHHHHHHHhcCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVW-EKDTSVSTLFVNNLRKLGC 814 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~-~~~~~~~~~~~~~~~~~~~ 814 (993)
...+||+|||++..+..++..|+..|+++. ++.+..+|+..+... .+|++++|..+. ..+ ....++.+++.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~~~~~~~---g~~~~~~l~~~-- 80 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDL--RPDIALVDIMLCGALD---GVETAARLAAG-- 80 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCCSSSC---HHHHHHHHHHH--
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhC--CCCEEEEecCCCCCCC---HHHHHHHHHhC--
Confidence 457999999999999999999999999999 599999999988763 489999998875 222 23456677665
Q ss_pred CCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 815 ~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
...|.+ +++............ ..|...++.||+....+...+..++..
T Consensus 81 ~~~~ii-~ls~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 81 CNLPII-FITSSQDVETFQRAK-RVNPFGYLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp SCCCEE-EEECCCCHHHHHHHH-TTCCSEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCCCEE-EEecCCCHHHHHHHH-hcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 222444 443332222211222 237789999999999999999888753
No 204
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=97.93 E-value=8.6e-05 Score=70.68 Aligned_cols=117 Identities=16% Similarity=0.251 Sum_probs=84.4
Q ss_pred cCCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
..+.++|++||++..+..++..|+..|+.+..+.++.+|++.+... ..+|++++|..+...+ ....++.+++..
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-~~~dlvilD~~l~~~~---g~~~~~~l~~~~-- 86 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQL-STCDLLIVSDQLVDLS---IFSLLDIVKEQT-- 86 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGG-GSCSEEEEETTCTTSC---HHHHHHHHTTSS--
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCC---HHHHHHHHHhhC--
Confidence 3568999999999999999999999999999999999999887652 3589999998875432 234567777632
Q ss_pred CCceEEEEe-ccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 816 FQSKLFLLA-NSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 816 ~~~~~~lla-~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
....+++++ ....... .... ...++.||+....+...+..++.
T Consensus 87 ~~~~ii~ls~~~~~~~~----~~~~-~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 87 KQPSVLILTTGRHELIE----SSEH-NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp SCCEEEEEESCC--CCC----CSSS-CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCCCEEEEECCCCCHHH----HHHH-HHheeeCCCCHHHHHHHHHHHHH
Confidence 123344443 2222211 1222 56899999999999999987764
No 205
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=97.93 E-value=4.1e-05 Score=72.58 Aligned_cols=117 Identities=18% Similarity=0.237 Sum_probs=85.2
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.+||+|||++..+..++..|+..|+.|..+.++.+|++.+... .+|++++|..++..+ ....++.+++..+ ..
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~l~~~~---g~~~~~~l~~~~~--~~ 76 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENE--FFNLALFXIKLPDME---GTELLEKAHKLRP--GM 76 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSBCSSSB---HHHHHHHHHHHCT--TS
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCc---hHHHHHHHHhhCC--CC
Confidence 5899999999999999999999999999999999999988653 589999998875433 2345666666432 23
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++++............ ..|...++.||+....+...+..++.
T Consensus 77 ~ii~~s~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 77 KKIMVTGYASLENSVFSL-NAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp EEEEEESCCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cEEEEeccccHHHHHHHH-hccchhhccCCCCHHHHHHHHHHHHh
Confidence 334443322222222222 23778999999999999999887764
No 206
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=97.92 E-value=9.2e-05 Score=69.55 Aligned_cols=120 Identities=14% Similarity=0.208 Sum_probs=85.8
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccc-cCccchHHHHHHHHhcCCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWE-KDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~-~~~~~~~~~~~~~~~~~~~ 815 (993)
.+.+||++||++..+..+...|+..|+.+..+.++.+|++.+... ..+|++++|..+.. .+ ....++.+++..+
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~~---g~~~~~~l~~~~~- 78 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQPPD---GWQVARVAREIDP- 78 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSSSC---HHHHHHHHHHHCT-
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCCCC---HHHHHHHHHhcCC-
Confidence 357899999999999999999999999999999999999988754 26899999988753 22 2345677776532
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcCC
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~ 865 (993)
...+++++............. ...++.||+....+...+.+++...
T Consensus 79 -~~~ii~~s~~~~~~~~~~~~~---~~~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 79 -NMPIVYISGHAALEWASNGVP---DSIILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp -TCCEEEEESSCCTTHHHHSCT---TCEEEESSCCHHHHHHHHHHHHHTT
T ss_pred -CCCEEEEeCCccHHHHHhhcC---CcceEeCCCCHHHHHHHHHHHHhcC
Confidence 233333433222221111111 1258999999999999999888643
No 207
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=97.92 E-value=5.9e-05 Score=71.73 Aligned_cols=117 Identities=12% Similarity=0.156 Sum_probs=82.9
Q ss_pred ccCCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCC
Q 001941 735 EFQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814 (993)
Q Consensus 735 ~~~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 814 (993)
...+.+||+|||++..+..+...|+..|+.|..+.++.+|+..+... .+|+++ + ++.+ ....++.+++.
T Consensus 15 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----~--~~~~-g~~~~~~l~~~-- 83 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----V--SDKN-ALSFVSRIKEK-- 83 (137)
T ss_dssp CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHS--CCSEEE----E--CSTT-HHHHHHHHHHH--
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcC--CCCEEE----E--cCcc-HHHHHHHHHhc--
Confidence 34678999999999999999999999999999999999999988764 578887 2 2222 24566777765
Q ss_pred CCCceEEEEeccCCcccccccCCCCCCCcccccCC-cchHHHHHHHHHhc
Q 001941 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMG 863 (993)
Q Consensus 815 ~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl-~~~~l~~~l~~~l~ 863 (993)
.....+++++........... ...|...++.||+ ....+...+..++.
T Consensus 84 ~~~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 84 HSSIVVLVSSDNPTSEEEVHA-FEQGADDYIAKPYRSIKALVARIEARLR 132 (137)
T ss_dssp STTSEEEEEESSCCHHHHHHH-HHTTCSEEEESSCSCHHHHHHHHHHHTC
T ss_pred CCCccEEEEeCCCCHHHHHHH-HHcCCceeeeCCCCCHHHHHHHHHHHHh
Confidence 202333334332222211112 1236788999999 99999999988764
No 208
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=97.92 E-value=5.9e-05 Score=69.95 Aligned_cols=115 Identities=12% Similarity=0.219 Sum_probs=83.1
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.++|++||++..+..+...|+..|+.+..+.++.++++.+.. ..+|++++|..++..+ ....++.+++. . ..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~---g~~~~~~l~~~--~-~~ 74 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN--QSVDLILLDINLPDEN---GLMLTRALRER--S-TV 74 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSC---HHHHHHHHHTT--C-CC
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhc--CCCCEEEEeCCCCCCC---hHHHHHHHHhc--C-CC
Confidence 479999999999999999999999999999999999988765 3589999998876433 23456677762 1 23
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
.+++++........... ...|...++.||+....+...+..++
T Consensus 75 ~ii~~s~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~ 117 (122)
T 1zgz_A 75 GIILVTGRSDRIDRIVG-LEMGADDYVTKPLELRELVVRVKNLL 117 (122)
T ss_dssp EEEEEESSCCHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEECCCChhhHHHH-HHhCHHHHccCCCCHHHHHHHHHHHH
Confidence 33334332222211111 12367789999999999998887765
No 209
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=97.92 E-value=4.8e-05 Score=72.74 Aligned_cols=118 Identities=15% Similarity=0.219 Sum_probs=86.2
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
..+||+|||++..+..++..|+..|++|..+.++.+|++.+.. ..+|++++|. +.. . .....++.+++..+ .
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~-~~~--~-~g~~~~~~l~~~~~--~ 75 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRR--EKIDLVFVDV-FEG--E-ESLNLIRRIREEFP--D 75 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTT--SCCSEEEEEC-TTT--H-HHHHHHHHHHHHCT--T
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc--cCCCEEEEeC-CCC--C-cHHHHHHHHHHHCC--C
Confidence 4689999999999999999999999999999999999999876 4689999998 533 2 22346677776532 2
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
..+++++............ ..|...++.||+....+...+..++..
T Consensus 76 ~pii~ls~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 76 TKVAVLSAYVDKDLIINSV-KAGAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp CEEEEEESCCCHHHHHHHH-HHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCHHHHHHHH-HCCcceeEeCCCCHHHHHHHHHHHHhh
Confidence 3344443332222111111 226778999999999999999988854
No 210
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=97.91 E-value=8.1e-05 Score=70.46 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=86.3
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
+.++|++||++..+..+...|+..|+.+..+.++.+|+..+.. ..+|++++|..++..+ ....++.+++..+ ..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~---g~~~~~~l~~~~~-~~ 76 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET--EKPDLIVLDVMLPKLD---GIEVCKQLRQQKL-MF 76 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESSCSSSC---HHHHHHHHHHTTC-CC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhh--cCCCEEEEecCCCCCC---HHHHHHHHHcCCC-CC
Confidence 3689999999999999999999999999999999999988765 3579999998875433 2346677776532 22
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
|.++ ++............ ..|...++.||+....+...+..++..
T Consensus 77 ~ii~-~s~~~~~~~~~~~~-~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 77 PILM-LTAKDEEFDKVLGL-ELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp CEEE-EECTTCCCCHHHHH-HTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred CEEE-EECCCCHHHHHHHH-hCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 4433 33322222111111 236778999999999999999887753
No 211
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.89 E-value=1.8e-05 Score=89.20 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEEEeecccccchhhhhcccccCcCCCCCccccccccCCcccccCCCCCCCCCCCC
Q 001941 552 RFRQIITNLMGNSIKFTEKGHIFVTVYLVEEVVDSIEVETELSSSKNTLSGYPVADRCHSWKGFKTFNQDGSTSPFKSSS 631 (993)
Q Consensus 552 rL~QIL~NLL~NAiKfT~~G~I~v~v~~~e~~~~~i~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (993)
++.+++.||+.||+++. ...|.|.+. +.
T Consensus 25 ~~~~vv~eLv~NaiDA~-a~~I~I~i~--~~------------------------------------------------- 52 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN-ANQIEIIFK--DY------------------------------------------------- 52 (367)
T ss_dssp SHHHHHHHHHHHHHHTT-CSEEEEEEE--TT-------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHCC-CCEEEEEEE--eC-------------------------------------------------
Confidence 57799999999999986 445655442 00
Q ss_pred CCceeEEEEEEEcCCCCChhhHhhccCCccccCCCCc------CcCCCccchHHHHHHHHHHcCCEEEEEEeCC--CeEE
Q 001941 632 ADLINLIVSVEDTGQGIPLEAQSRIFTPFMQVGPSIS------RTHGGTGIGLSISKYLVGRMKGEIGFVSIPN--IGST 703 (993)
Q Consensus 632 ~~~~~l~i~V~DtG~GI~~e~~~~IFepF~q~~~s~s------~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g--~GSt 703 (993)
....|+|.|+|+|||+++++.+|+||++.+.... ...|-.|.||+-+..+ +++.+.|... .|+.
T Consensus 53 ---~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~av-----S~l~V~sr~~~~~~~~ 124 (367)
T 3h4l_A 53 ---GLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGI-----AKLSVITTTSPPKADK 124 (367)
T ss_dssp ---TTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEETTHHHHHHHHS-----SEEEEEEESSTTCEEE
T ss_pred ---CEEEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhhccCccchHHHHhhcc-----CEEEEEEEECCCCEEE
Confidence 0125999999999999999999999997654321 1122247778755444 2689988764 3544
Q ss_pred EEE
Q 001941 704 FTF 706 (993)
Q Consensus 704 F~~ 706 (993)
..+
T Consensus 125 ~~~ 127 (367)
T 3h4l_A 125 LEY 127 (367)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 212
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=97.88 E-value=4.8e-05 Score=72.31 Aligned_cols=121 Identities=9% Similarity=0.063 Sum_probs=86.7
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEecccccc---CccchHHHHHHHHhcCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEK---DTSVSTLFVNNLRKLGC 814 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~---~~~~~~~~~~~~~~~~~ 814 (993)
..+||+|||++..+..++..|+..|+.|..+.+..+|++.+... .+|++++|..+... +. .....++.+++..+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~~~~~~~~~~-~g~~~~~~l~~~~~ 79 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREE--NPEVVLLDMNFTSGINNGN-EGLFWLHEIKRQYR 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHS--CEEEEEEETTTTC-----C-CHHHHHHHHHHHCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcC--CCCEEEEeCCcCCCCCCCc-cHHHHHHHHHhhCc
Confidence 36899999999999999999999999999999999999998764 48999999887510 22 22345667776522
Q ss_pred CCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 815 ~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
..|.+++ +............ ..|...++.||+....+...+..++..
T Consensus 80 -~~~ii~l-s~~~~~~~~~~~~-~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 80 -DLPVVLF-TAYADIDLAVRGI-KEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp -TCCEEEE-EEGGGHHHHHHHH-HTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred -CCCEEEE-ECCCCHHHHHHHH-HcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 2244443 3322221111121 226788999999999999999988853
No 213
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=97.87 E-value=7.1e-05 Score=76.81 Aligned_cols=117 Identities=10% Similarity=0.125 Sum_probs=86.0
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
..+||+|||++..+..+...|+..|+.+. .+.++.+|+..+... .+|++++|..++..+ ....++.++....
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~--~~dlvi~D~~~p~~~---g~~~~~~l~~~~~-- 85 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELH--KPDLVIMDVKMPRRD---GIDAASEIASKRI-- 85 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSC---HHHHHHHHHHTTC--
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCC---hHHHHHHHHhcCC--
Confidence 36899999999999999999999999998 899999999988653 589999999886533 2345677776532
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.|.+++.+.. ........ ...|...++.||+....+...+..++.
T Consensus 86 ~pii~lt~~~-~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~~~ 130 (205)
T 1s8n_A 86 APIVVLTAFS-QRDLVERA-RDAGAMAYLVKPFSISDLIPAIELAVS 130 (205)
T ss_dssp SCEEEEEEGG-GHHHHHTT-GGGSCEEEEEESCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCC-CHHHHHHH-HhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 2444443332 22111122 223677899999999999999988764
No 214
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=97.86 E-value=3.6e-05 Score=74.13 Aligned_cols=111 Identities=17% Similarity=0.250 Sum_probs=75.1
Q ss_pred CCceEEEeCCchhhHHHHHHHHHHc-CCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~l-G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 814 (993)
.+.+||++||++..+..++..|+.. |+.+. .+.++.+|++.+.... .+|++++|..++..++ ...++.+++...
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~-~~dlvilD~~l~~~~g---~~~~~~lr~~~~ 87 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQP-NVDLILLDIEMPVMDG---MEFLRHAKLKTR 87 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCT-TCCEEEECTTSCCCTT---CHHHHHHHHHCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCC-CCCEEEEeCCCCCCCH---HHHHHHHHhcCC
Confidence 4578999999999999999999999 89864 8999999999887642 6899999998865443 235566666532
Q ss_pred CCCceEEEEec-cCCcccccccCCCCCCCcccccCCcchHH
Q 001941 815 GFQSKLFLLAN-SISSSRANTSTDGVSIPSVIMKPLRSSML 854 (993)
Q Consensus 815 ~~~~~~~lla~-~~~~~~~~~~~~~~~~~~~l~KPl~~~~l 854 (993)
..++++.. ..............|...++.||+....+
T Consensus 88 ---~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l 125 (145)
T 3kyj_B 88 ---AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSH 125 (145)
T ss_dssp ---CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC--
T ss_pred ---CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 23333332 12221111111233678899999985433
No 215
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=97.85 E-value=5.9e-05 Score=69.53 Aligned_cols=116 Identities=17% Similarity=0.229 Sum_probs=83.0
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.++|++||++..+..++..|+..|+.+..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++.. ..|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~---g~~~~~~l~~~~--~~~ 74 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA--EQPDIIILDLMLPEID---GLEVAKTIRKTS--SVP 74 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEECSSCSSSC---HHHHHHHHHHHC--CCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHh--CCCCEEEEeccCCCCC---HHHHHHHHHhCC--CCC
Confidence 379999999999999999999999999999999999988865 3589999998875433 234566666531 224
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.++ ++............ ..|...++.||+....+...+..++.
T Consensus 75 ii~-~s~~~~~~~~~~~~-~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 75 ILM-LSAKDSEFDKVIGL-ELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp EEE-EESCCSHHHHHHHH-HHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEE-EecCCchHHHHHHH-hCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 333 33322221111111 22677899999999999998887653
No 216
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=97.85 E-value=0.00013 Score=75.03 Aligned_cols=26 Identities=19% Similarity=0.008 Sum_probs=17.6
Q ss_pred eEEEEEEEcCCCCChhhHhhccCCcc
Q 001941 636 NLIVSVEDTGQGIPLEAQSRIFTPFM 661 (993)
Q Consensus 636 ~l~i~V~DtG~GI~~e~~~~IFepF~ 661 (993)
.+.|.|.|+|+||+++.++++|++.+
T Consensus 145 ~l~i~V~d~G~~i~~e~~~~if~~~~ 170 (192)
T 1ixm_A 145 QLILYLDFHGAFADPSAFDDIRQNGY 170 (192)
T ss_dssp SCEEEEEEESCBSCGGGCC-------
T ss_pred EEEEEEEeCCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999998654
No 217
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=97.85 E-value=0.00019 Score=74.90 Aligned_cols=118 Identities=17% Similarity=0.135 Sum_probs=87.2
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
.++||+|||++..+..+...|+..|+.|..+.++.+|++.+... .+|++++|..++..+ ....++.+++..+ ..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~---g~~~~~~l~~~~~-~~ 80 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATEN--RPDAIVLDINMPVLD---GVSVVTALRAMDN-DV 80 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESSCSSSC---HHHHHHHHHHTTC-CC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCC---HHHHHHHHHhcCC-CC
Confidence 46899999999999999999999999999999999999988663 589999999886433 2345677776532 22
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
|.+++.+. ......... ...|...++.||+....+...+..++.
T Consensus 81 ~ii~lt~~-~~~~~~~~~-~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 81 PVCVLSAR-SSVDDRVAG-LEAGADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp CEEEEECC-CTTTCCCTT-TTTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEEEcC-CCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 44443332 222222222 233778999999999999999988874
No 218
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.84 E-value=4e-05 Score=86.96 Aligned_cols=118 Identities=13% Similarity=0.142 Sum_probs=86.4
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
++||||||++..+..++..|+..|+.|..+.++.+|++.+.. ..+|++++|..|+..++.. .++.+++..+ ..
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~DlvllDi~mP~~dG~e---ll~~lr~~~~--~~ 73 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE--LFFPVIVLDVWMPDGDGVN---FIDFIKENSP--DS 73 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--BCCSEEEEESEETTEETTT---HHHHHHHHCT--TC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHH---HHHHHHhhCC--CC
Confidence 379999999999999999999999999999999999999876 3589999999987654333 4566665432 22
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
.+++++............ ..|...++.||+....+...+.+++..
T Consensus 74 pvI~lT~~~~~~~~~~a~-~~Ga~~yl~KP~~~~~L~~~i~~~l~~ 118 (368)
T 3dzd_A 74 VVIVITGHGSVDTAVKAI-KKGAYEFLEKPFSVERFLLTIKHAFEE 118 (368)
T ss_dssp EEEEEECSSCCHHHHHHH-HHTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCHHHHHHHH-hcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 333333222222222222 226778999999999999999888753
No 219
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=97.83 E-value=6.5e-05 Score=70.73 Aligned_cols=118 Identities=15% Similarity=0.199 Sum_probs=84.2
Q ss_pred ceEEEeCCchhhHHHHHHHHHHc-CCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRL-GIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~l-G~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
.++|++||++..+..++..|+.. |+.+. .+.++.+|++.+.. ..+|++++|..++..+ ....++.+++... .
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~---g~~~~~~l~~~~~-~ 76 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE--KRPDILLLDIIMPHLD---GLAVLERIRAGFE-H 76 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSC---HHHHHHHHHHHCS-S
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCC---HHHHHHHHHhcCC-C
Confidence 58999999999999999999998 88875 78999999998865 3579999999876433 2345667766322 1
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+.+++++............ ..|...++.||+....+...+.+++.
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~-~~ga~~~l~KP~~~~~l~~~i~~~~~ 122 (130)
T 1dz3_A 77 QPNVIMLTAFGQEDVTKKAV-ELGASYFILKPFDMENLAHHIRQVYG 122 (130)
T ss_dssp CCEEEEEEETTCHHHHHHHH-HTTCEEEEECSSCCTTHHHHHHHHHH
T ss_pred CCcEEEEecCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 23444444332222222221 22677899999999999999988774
No 220
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=97.81 E-value=5.4e-05 Score=73.49 Aligned_cols=118 Identities=14% Similarity=0.191 Sum_probs=84.8
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
..+||+|||++..+..+...|+. |+.|..+.++.+|++.+... .++|++++|..+...+ ....++.+++..+ .
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~---g~~~~~~l~~~~~--~ 76 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKS-DPFSVIMVDMRMPGME---GTEVIQKARLISP--N 76 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHS-CCCSEEEEESCCSSSC---HHHHHHHHHHHCS--S
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCc---HHHHHHHHHhcCC--C
Confidence 46899999999999999999986 99999999999999998764 3479999999886533 2345666766432 2
Q ss_pred ceEEEEeccCCcccccccCCCCC-CCcccccCCcchHHHHHHHHHhc
Q 001941 818 SKLFLLANSISSSRANTSTDGVS-IPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~-~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
..+++++.............. | ...++.||+....+...+..++.
T Consensus 77 ~~ii~~s~~~~~~~~~~~~~~-g~~~~~l~KP~~~~~L~~~i~~~l~ 122 (151)
T 3kcn_A 77 SVYLMLTGNQDLTTAMEAVNE-GQVFRFLNKPCQMSDIKAAINAGIK 122 (151)
T ss_dssp CEEEEEECGGGHHHHHHHHHH-TCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHc-CCeeEEEcCCCCHHHHHHHHHHHHH
Confidence 334444332222222222222 4 67899999999999999988774
No 221
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=97.81 E-value=0.00011 Score=71.31 Aligned_cols=121 Identities=11% Similarity=0.119 Sum_probs=87.6
Q ss_pred cCCceEEEeCCchhhHHHHHHHHHHcCCE--EEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcC
Q 001941 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQ--VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLG 813 (993)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~L~~lG~~--v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~ 813 (993)
-.+.+||+|||++..+..+...|+..|.. +..+.+..+|++.+... .+|++++|..+...+ ....++.+++..
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~---g~~~~~~l~~~~ 87 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAH--LPDVALLDYRMPGMD---GAQVAAAVRSYE 87 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHH--CCSEEEEETTCSSSC---HHHHHHHHHHTT
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCC---HHHHHHHHHhcC
Confidence 35789999999999999999999999955 56799999999998763 589999999875433 334667777653
Q ss_pred CCCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 814 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 814 ~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
+ ..++++++............ ..|...++.||+....+...+..++..
T Consensus 88 ~--~~~ii~~s~~~~~~~~~~~~-~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 88 L--PTRVLLISAHDEPAIVYQAL-QQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp C--SCEEEEEESCCCHHHHHHHH-HTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred C--CCeEEEEEccCCHHHHHHHH-HcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 2 23344444333322222222 236789999999999999999988853
No 222
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=97.80 E-value=6.4e-05 Score=73.23 Aligned_cols=118 Identities=13% Similarity=0.143 Sum_probs=85.1
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
+.+||+|||++..+..+...|+..|+.|..+.++.+|+..+.. ..+|++++|..+...+ ....++.+++..+ ..
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dliild~~l~~~~---g~~~~~~l~~~~~-~~ 76 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA--DFAGIVISDIRMPGMD---GLALFRKILALDP-DL 76 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCT--TCCSEEEEESCCSSSC---HHHHHHHHHHHCT-TS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCC---HHHHHHHHHhhCC-CC
Confidence 4689999999999999999999999999999999999988755 4589999998875432 2345667766532 22
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
|.+++ +............ ..|...++.||+....+...+..++.
T Consensus 77 pii~l-s~~~~~~~~~~~~-~~g~~~~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 77 PMILV-TGHGDIPMAVQAI-QDGAYDFIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp CEEEE-ECGGGHHHHHHHH-HTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEE-ECCCChHHHHHHH-hcCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 44443 3322221111111 23678899999999999999988764
No 223
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=97.79 E-value=0.00015 Score=75.24 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=87.1
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
+++||+|||++..+..+...|+..|+.|..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++..+ ..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~---g~~~~~~lr~~~~-~~ 75 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN--EPFDVVILDIMLPVHD---GWEILKSMRESGV-NT 75 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSC---HHHHHHHHHHTTC-CC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhcCC-CC
Confidence 3689999999999999999999999999999999999998865 3589999999886433 2346677776532 22
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
|.+++. ........... ...|...++.||+....+...+..++.
T Consensus 76 ~ii~ls-~~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 76 PVLMLT-ALSDVEYRVKG-LNMGADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp CEEEEE-SSCHHHHHHHT-CCCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEEe-CCCCHHHHHHH-HhCCccEEEeCCCCHHHHHHHHHHHHh
Confidence 444433 22222222222 233778999999999999999988875
No 224
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.77 E-value=7.1e-05 Score=71.55 Aligned_cols=116 Identities=10% Similarity=0.103 Sum_probs=84.5
Q ss_pred eEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCce
Q 001941 740 KALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSK 819 (993)
Q Consensus 740 rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (993)
+||+|||++..+..++..|+..|+.|..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++..+ ...
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvllD~~l~~~~---g~~l~~~l~~~~~--~~~ 78 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIER--SKPQLIILDLKLPDMS---GEDVLDWINQNDI--PTS 78 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHH--HCCSEEEECSBCSSSB---HHHHHHHHHHTTC--CCE
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCC---HHHHHHHHHhcCC--CCC
Confidence 79999999999999999999999999999999999998865 3589999998875433 2345667776421 223
Q ss_pred EEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 820 LFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 820 ~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
+++++............ ..|...++.||+....+...+..++.
T Consensus 79 ii~ls~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 79 VIIATAHGSVDLAVNLI-QKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp EEEEESSCCHHHHHHHH-HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEEecCcHHHHHHHH-HCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 34443322222211221 23677899999999999999888774
No 225
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=97.76 E-value=4.8e-05 Score=71.72 Aligned_cols=120 Identities=13% Similarity=0.186 Sum_probs=85.6
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
..+||+|||++..+..++..|+..|..+..+++..++++.+... +|++++|..+...+ ....++.+++..+ .
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~---~dlvi~D~~l~~~~---g~~~~~~l~~~~~--~ 74 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNK---QDIIILDLMMPDMD---GIEVIRHLAEHKS--P 74 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCT---TEEEEEECCTTTTH---HHHHHHHHHHTTC--C
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhccC---CCEEEEeCCCCCCC---HHHHHHHHHhCCC--C
Confidence 36899999999999999999999999999999999998766543 89999998875432 3345677776432 2
Q ss_pred ceEEEEeccCCc----ccccccCCCCCCCcccccCCcchHHHHHHHHHhcCC
Q 001941 818 SKLFLLANSISS----SRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGVG 865 (993)
Q Consensus 818 ~~~~lla~~~~~----~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~~ 865 (993)
.++++++..... ..........|...++.||+....+...+.++.+..
T Consensus 75 ~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 75 ASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 334444332221 011111223356789999999999999999988643
No 226
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=97.74 E-value=0.00026 Score=79.73 Aligned_cols=196 Identities=14% Similarity=0.135 Sum_probs=121.6
Q ss_pred ceEEEeCCchhhHHHHHHHHHHc-CCE-EEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~l-G~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
.+||+|||++..+..++..|+.. |+. +..+.++.+|++.+.. ..+|++++|..++..+ + ...++.+++..+
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~--~~pDlVllDi~mp~~d--G-lell~~l~~~~p-- 76 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK--FNPDVLTLDVEMPRMD--G-LDFLEKLMRLRP-- 76 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEECCCSSSC--H-HHHHHHHHHSSC--
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhc--cCCCEEEEECCCCCCC--H-HHHHHHHHhcCC--
Confidence 68999999999999999999997 998 6799999999998865 3589999999886533 2 345677776532
Q ss_pred CceEEEEeccCCccc-ccccCCCCCCCcccccCCcc---------hHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCC
Q 001941 817 QSKLFLLANSISSSR-ANTSTDGVSIPSVIMKPLRS---------SMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLG 886 (993)
Q Consensus 817 ~~~~~lla~~~~~~~-~~~~~~~~~~~~~l~KPl~~---------~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 886 (993)
.|.+++........+ .... ...|...++.||+.. .+|...+..+......... ..+. ... ...
T Consensus 77 ~pVIvlS~~~~~~~~~~~~a-l~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~~~~~~~---~~~~-~~~--~~~ 149 (349)
T 1a2o_A 77 MPVVMVSSLTGKGSEVTLRA-LELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARARIAAHK---PMAA-PTT--LKA 149 (349)
T ss_dssp CCEEEEECCTHHHHHHHHHH-HHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHCCGGGGS---CCCC-CCC--CCC
T ss_pred CcEEEEECCCcccHHHHHHH-HhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhhhcccCC---Cccc-cCC--CCC
Confidence 344433322111010 1111 122677899999983 6677777666543211100 0000 000 000
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCE-EEEEcCHHHHHHHhCC--CCCCcEEEEcCCCCCCCHHHHHHHHhccCCceEEE
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAA-VVCVERGKKATELLMP--PHQFDACFMDIQMPEMDGYEMLPCFESFLLIAILV 963 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~-v~~a~~g~eAl~~~~~--~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~~~~~~ 963 (993)
.++. .....- +-....|.+|+..+.. +..++.++++.+||..-.-.+.+++.+....||..
T Consensus 150 ~~~~----------------~~~~vv~iGaS~gG~~al~~~l~~lp~~~~~ivivqH~~~~~~~~~~~~l~~~~~~~v~~ 213 (349)
T 1a2o_A 150 GPLL----------------SSEKLIAIGASTGGTEAIRHVLQPLPLSSPAVIITQHMPPGFTRSFAERLNKLCQISVKE 213 (349)
T ss_dssp CCCC----------------CTTCEEEEEECTTHHHHHHHHHTTCCTTCCEEEEEECCCTTHHHHHHHHHHHHCSSEEEE
T ss_pred cccC----------------CCceEEEEecCcccHHHHHHHHHhCCCCCCeEEEEecCCCCccHHHHHHHhccCCCceEE
Confidence 0000 001111 1134567888887632 23466688999999998888999999998888765
Q ss_pred E
Q 001941 964 W 964 (993)
Q Consensus 964 ~ 964 (993)
-
T Consensus 214 a 214 (349)
T 1a2o_A 214 A 214 (349)
T ss_dssp C
T ss_pred c
Confidence 4
No 227
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=97.71 E-value=0.00011 Score=71.24 Aligned_cols=119 Identities=13% Similarity=0.171 Sum_probs=86.8
Q ss_pred CCceEEEeCCchhhHHHHHHHHHH-cCCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCC
Q 001941 737 QGMKALVVDPRPIRAKVSRYHIQR-LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGC 814 (993)
Q Consensus 737 ~g~rvLvvdd~~~~~~v~~~~L~~-lG~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~ 814 (993)
...+||++||++..+..++..|+. .|+.+. .+.++.+|++.+... .+|++++|..+...+ ....++.+++..+
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~---g~~~~~~l~~~~~ 78 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRET--TPDIVVMDLTLPGPG---GIEATRHIRQWDG 78 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTT--CCSEEEECSCCSSSC---HHHHHHHHHHHCT
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCC---HHHHHHHHHHhCC
Confidence 457899999999999999999998 899998 899999999988764 489999998875432 3346677776532
Q ss_pred CCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 815 GFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 815 ~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
...+++++............ ..|...++.||+....+...+..++.
T Consensus 79 --~~~ii~ls~~~~~~~~~~~~-~~g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 79 --AARILIFTMHQGSAFALKAF-EAGASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp --TCCEEEEESCCSHHHHHHHH-HTTCSEEEETTSCTTHHHHHHHHHTT
T ss_pred --CCeEEEEECCCCHHHHHHHH-HCCCcEEEecCCCHHHHHHHHHHHHh
Confidence 22334443332222222221 23678899999999999999988764
No 228
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=97.70 E-value=9.1e-05 Score=76.00 Aligned_cols=118 Identities=12% Similarity=0.119 Sum_probs=85.3
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
..+||+|||++..+..+...|+..|+.|..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++..+ ..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~---g~~~~~~l~~~~~-~~ 77 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP--EQHGCLVLDMRMPGMS---GIELQEQLTAISD-GI 77 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCT--TSCEEEEEESCCSSSC---HHHHHHHHHHTTC-CC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhc--cCCCEEEEeCCCCCCC---HHHHHHHHHhcCC-CC
Confidence 3589999999999999999999999999999999999988754 4689999999886433 2345677776532 22
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
|.+++.+.. ......... ..|...++.||+....+...+..++.
T Consensus 78 ~ii~ls~~~-~~~~~~~a~-~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (208)
T 1yio_A 78 PIVFITAHG-DIPMTVRAM-KAGAIEFLPKPFEEQALLDAIEQGLQ 121 (208)
T ss_dssp CEEEEESCT-TSCCCHHHH-HTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CEEEEeCCC-CHHHHHHHH-HCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 444443322 221111111 23677899999999999998887764
No 229
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=97.69 E-value=0.00013 Score=67.27 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=82.1
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.++|++||++..+..+...|+..|+.+..+.++.+++..+.. ..+|++++|..++..+ ....++.+++. ...|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~~~---g~~~~~~l~~~--~~~~ 74 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGD---GIEFIRDLRQW--SAVP 74 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESEETTEE---HHHHHHHHHTT--CCCC
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCc---HHHHHHHHHhC--CCCc
Confidence 479999999999999999999999999999999999988754 3579999998875432 23456677642 2224
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHh
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAM 862 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l 862 (993)
.+ +++............ ..|...++.||+....+...+..++
T Consensus 75 ii-~~s~~~~~~~~~~~~-~~g~~~~l~Kp~~~~~l~~~i~~~~ 116 (121)
T 1zh2_A 75 VI-VLSARSEESDKIAAL-DAGADDYLSKPFGIGELQARLRVAL 116 (121)
T ss_dssp EE-EEESCCSHHHHHHHH-HHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EE-EEECCCCHHHHHHHH-hcCCCeEEeCCcCHHHHHHHHHHHH
Confidence 33 333322222111111 2267789999999999999887765
No 230
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=97.69 E-value=0.00015 Score=68.72 Aligned_cols=117 Identities=9% Similarity=0.109 Sum_probs=84.3
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcC--CEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLG--IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG--~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
.++|++||++..+..+...|+..| ..+..+.++.+|++.+... .+|++++|..++..+ ....++.+++..+
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~--~~dlvilD~~lp~~~---g~~~~~~l~~~~~-- 76 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEY--NPNVVILDIEMPGMT---GLEVLAEIRKKHL-- 76 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHTTC--
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhc--CCCEEEEecCCCCCC---HHHHHHHHHHHCC--
Confidence 579999999999999999999998 6778899999999988653 579999999876433 2345677776421
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
..++++++............ ..|...++.||+....+...+.+++.
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~-~~ga~~~l~Kp~~~~~L~~~i~~~~~ 122 (133)
T 3b2n_A 77 NIKVIIVTTFKRPGYFEKAV-VNDVDAYVLKERSIEELVETINKVNN 122 (133)
T ss_dssp SCEEEEEESCCCHHHHHHHH-HTTCSEEEETTSCHHHHHHHHHHHHC
T ss_pred CCcEEEEecCCCHHHHHHHH-HcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 23344443322222222222 23678999999999999999988774
No 231
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=97.65 E-value=0.00015 Score=77.23 Aligned_cols=118 Identities=18% Similarity=0.202 Sum_probs=87.1
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
..+||+|||++..+..++..|+..|+.|..+.++.+|++.+... .+|++++|..++..+ ....++.+++. ...
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlvllD~~lp~~~---G~~l~~~lr~~--~~~ 109 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARED--HPDLILLDLGLPDFD---GGDVVQRLRKN--SAL 109 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEEECCSCHHH---HHHHHHHHHTT--CCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCC---HHHHHHHHHcC--CCC
Confidence 46899999999999999999999999999999999999988664 589999999886432 33456677763 222
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
|.+++. ............ ..|...++.||+....|.+.+..++..
T Consensus 110 ~iI~lt-~~~~~~~~~~a~-~~Ga~~yl~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 110 PIIVLT-ARDTVEEKVRLL-GLGADDYLIKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp CEEEEE-SCCSHHHHHHHH-HHTCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred CEEEEE-CCCCHHHHHHHH-HCCCcEEEECCCCHHHHHHHHHHHHhh
Confidence 444433 322222221221 226778999999999999999988854
No 232
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=97.64 E-value=0.00024 Score=68.14 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=81.4
Q ss_pred ceEEEeCCchhhHHHHHHHHHH--cCCEEE-EecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQR--LGIQVE-VVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~--lG~~v~-~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
.+||+|||++..+..+...|+. .|+.+. .+.++.++++.+.. ..+|++++|..++..+ ....++.+++..+
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~---g~~l~~~l~~~~~- 76 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALK--HPPNVLLTDVRMPRMD---GIELVDNILKLYP- 76 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT--SCCSEEEEESCCSSSC---HHHHHHHHHHHCT-
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhc--CCCCEEEEeCCCCCCC---HHHHHHHHHhhCC-
Confidence 4899999999999999998874 688777 89999999988865 4589999999876433 2345667766432
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
...+++++........... ...|...++.||+....+...+.+++.
T Consensus 77 -~~~ii~ls~~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 77 -DCSVIFMSGYSDKEYLKAA-IKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp -TCEEEEECCSTTTCCC-------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred -CCcEEEEeCCCcHHHHHHH-HhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 2334444332222222222 233677999999999999999888774
No 233
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=97.64 E-value=0.00025 Score=68.74 Aligned_cols=120 Identities=11% Similarity=0.122 Sum_probs=81.8
Q ss_pred CceEEEeCCchhhHHHHHHHHHHc-CC-EEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRL-GI-QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~l-G~-~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
..+||+|||++..+..++..|+.. |+ .+..+.+..+|++.+..+ ..+|++++|..+...+ ....++.+++..+
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~---g~~~~~~l~~~~~- 77 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEAD-NTVDLILLDVNLPDAE---AIDGLVRLKRFDP- 77 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTT-CCCSEEEECC---------CHHHHHHHHHHCT-
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhcc-CCCCEEEEeCCCCCCc---hHHHHHHHHHhCC-
Confidence 368999999999999999999999 88 788999999999998762 4689999998875433 2345667776522
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
..++++++........... ...|...++.||+....+...+..++..
T Consensus 78 -~~~ii~ls~~~~~~~~~~~-~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 78 -SNAVALISGETDHELIRAA-LEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp -TSEEEEC-----CHHHHHH-HHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred -CCeEEEEeCCCCHHHHHHH-HHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 2334444332222211111 1236788999999999999999988853
No 234
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=97.63 E-value=0.00035 Score=66.69 Aligned_cols=117 Identities=16% Similarity=0.260 Sum_probs=84.3
Q ss_pred CceEEEeCCchhhHHHHHHHHHHc-CCE-EEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRL-GIQ-VEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~l-G~~-v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
..+||+|||++..+..+...|+.. |+. +..+.++.+|++.+... .+|++++|..+...+ ....++.+++..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvi~d~~l~~~~---g~~~~~~l~~~~-- 81 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHN--KVDAIFLDINIPSLD---GVLLAQNISQFA-- 81 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHC--CCSEEEECSSCSSSC---HHHHHHHHTTST--
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCEEEEecCCCCCC---HHHHHHHHHccC--
Confidence 478999999999999999999987 888 55899999999988764 489999998875432 234566776642
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
..+.+++++.. .. ..... ...|...++.||+....+...+.+++..
T Consensus 82 ~~~~ii~~s~~-~~-~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (143)
T 2qv0_A 82 HKPFIVFITAW-KE-HAVEA-FELEAFDYILKPYQESRIINMLQKLTTA 127 (143)
T ss_dssp TCCEEEEEESC-CT-THHHH-HHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCC-HH-HHHHH-HhCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 22444444433 22 11111 1236778999999999999999887753
No 235
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=97.61 E-value=0.00023 Score=74.98 Aligned_cols=117 Identities=18% Similarity=0.197 Sum_probs=87.0
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.+||+|||++..+..++..|+..|+.|..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++.. ..|
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvilD~~l~~~~---g~~~~~~lr~~~--~~~ 78 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE--LRPDLVLLDLMLPGMN---GIDVCRVLRADS--GVP 78 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHH--HCCSEEEEESSCSSSC---HHHHHHHHHTTC--CCC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCC---HHHHHHHHHhCC--CCc
Confidence 589999999999999999999999999999999999988865 3589999999876433 234567777642 235
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
.+++.+.. ......... ..|...++.||+....+.+.+..++..
T Consensus 79 ii~lt~~~-~~~~~~~~~-~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 79 IVMLTAKT-DTVDVVLGL-ESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp EEEEEETT-CCSCHHHHH-HTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred EEEEeCCC-CHHHHHHHH-HCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 44444332 221111111 236788999999999999999988854
No 236
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=97.60 E-value=0.00023 Score=70.27 Aligned_cols=119 Identities=16% Similarity=0.129 Sum_probs=80.7
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcC--CEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLG--IQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG--~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
..+||+|||++..+..++..|+..| ..+..+.++.+|++.+... .+|++++|..+...+ ....++.+++..+
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~---g~~l~~~lr~~~~- 98 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL--KPDVITMDIEMPNLN---GIEALKLIMKKAP- 98 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSC---HHHHHHHHHHHSC-
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccC--CCCEEEEeCCCCCCC---HHHHHHHHHhcCC-
Confidence 4789999999999999999999986 3355789999999988654 589999999876533 3345667776543
Q ss_pred CCceEEEEeccCCcc-cccccCCCCCCCcccccCCc---------chHHHHHHHHHhcC
Q 001941 816 FQSKLFLLANSISSS-RANTSTDGVSIPSVIMKPLR---------SSMLAASLQRAMGV 864 (993)
Q Consensus 816 ~~~~~~lla~~~~~~-~~~~~~~~~~~~~~l~KPl~---------~~~l~~~l~~~l~~ 864 (993)
.|. +++....... .........|...++.||+. ...+...+.+.+..
T Consensus 99 -~~i-i~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 99 -TRV-IMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp -CEE-EEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred -ceE-EEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 233 3333322211 11111122367899999998 56667777766643
No 237
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=97.54 E-value=9.3e-05 Score=75.33 Aligned_cols=115 Identities=14% Similarity=0.132 Sum_probs=80.4
Q ss_pred cCCceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 736 FQGMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 736 ~~g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
+.+.+||+|||++..+..+...|+..|+.|..+.++.+|+ ...+|++++|..++..+ + . ..+.++...
T Consensus 10 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al------~~~~dlvl~D~~mp~~~--g-~-l~~~~~~~~-- 77 (196)
T 1qo0_D 10 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF------DVPVDVVFTSIFQNRHH--D-E-IAALLAAGT-- 77 (196)
T ss_dssp GGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC------SSCCSEEEEECCSSTHH--H-H-HHHHHHHSC--
T ss_pred hcCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC------CCCCCEEEEeCCCCccc--h-H-HHHHHhccC--
Confidence 4578999999999999999999999999999988877665 24789999999885433 2 2 445555542
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
....+++++............ ..|...++.||+....+...+..++.
T Consensus 78 ~~~~ii~lt~~~~~~~~~~a~-~~ga~~~l~KP~~~~~L~~~l~~~~~ 124 (196)
T 1qo0_D 78 PRTTLVALVEYESPAVLSQII-ELECHGVITQPLDAHRVLPVLVSARR 124 (196)
T ss_dssp TTCEEEEEECCCSHHHHHHHH-HHTCSEEEESSCCGGGHHHHHHHHHH
T ss_pred CCCCEEEEEcCCChHHHHHHH-HcCCCeeEecCcCHHHHHHHHHHHHH
Confidence 223333333322222211111 22677899999999999998887764
No 238
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=97.54 E-value=0.00025 Score=73.84 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=85.8
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.+||+|||++..+..+...|+..|+.|..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++. ...|
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~l~~~~---g~~~~~~l~~~--~~~~ 77 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDR--AGADIVLLDLMLPGMS---GTDVCKQLRAR--SSVP 77 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH--HCCSEEEEESSCSSSC---HHHHHHHHHHH--CSCS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEECCCCCCC---HHHHHHHHHcC--CCCC
Confidence 589999999999999999999999999999999999998865 3589999999886433 23456667664 2224
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
.+++.+. .......... ..|...++.||+....+...+..++..
T Consensus 78 ii~lt~~-~~~~~~~~~~-~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 78 VIMVTAR-DSEIDKVVGL-ELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp EEEEECC-HHHHHHHHHH-HHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred EEEEeCC-CcHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 4444332 2211111111 226778999999999999999998854
No 239
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=97.53 E-value=0.00015 Score=82.66 Aligned_cols=117 Identities=16% Similarity=0.219 Sum_probs=81.4
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
..+||||||++..+..++..|++.|+.|..+.++.+|++.+.. ..+|++++|..++..++ ...++.+++..+ ..
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlvllD~~mp~~~G---~~~~~~lr~~~~-~~ 78 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES--EQPDLVICDLRMPQIDG---LELIRRIRQTAS-ET 78 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHH--SCCSEEEECCCSSSSCT---HHHHHHHHHTTC-CC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCCCCH---HHHHHHHHhhCC-CC
Confidence 3689999999999999999999999999999999999999876 35899999999865432 345667776532 22
Q ss_pred ceEEEEeccCCcccccccCCCCCCCcccccCC-cchHHHHHHHHHh
Q 001941 818 SKLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAM 862 (993)
Q Consensus 818 ~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl-~~~~l~~~l~~~l 862 (993)
|.+++.+.. ......... ..|...++.||+ ....+...+.+.+
T Consensus 79 pii~lt~~~-~~~~~~~a~-~~ga~~yl~KP~~~~~~l~~~i~~~~ 122 (394)
T 3eq2_A 79 PIIVLSGAG-VMSDAVEAL-RLGAADYLIKPLEDLAVLEHSVRRAL 122 (394)
T ss_dssp CEEEC---C-HHHHHHHHH-HHTCSEECCSSCSCTHHHHHHHHHHH
T ss_pred cEEEEEcCC-CHHHHHHHH-hcChhhEEECCCChHHHHHHHHHHHH
Confidence 444433221 111111111 226778999999 5677766665554
No 240
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.52 E-value=0.00027 Score=80.67 Aligned_cols=117 Identities=12% Similarity=0.163 Sum_probs=84.8
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
++||+|||++..+..++..|+..|+.|..+.++.+|++.+.. ..+|++++|..++..+ + ...++.+++..+ ..|
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~DlvllD~~mp~~d--G-~ell~~lr~~~~-~~p 74 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE--KHFNVVLLDLLLPDVN--G-LEILKWIKERSP-ETE 74 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHH--SCCSEEEEESBCSSSB--H-HHHHHHHHHHCT-TSE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCC--H-HHHHHHHHhhCC-CCc
Confidence 479999999999999999999999999999999999999876 3589999999886533 2 345667766432 124
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++.+.. +........ ..|..+++.||+....+...+.+++.
T Consensus 75 vIvlT~~~-~~~~~~~a~-~~Ga~dyl~KP~~~~~L~~~i~~~l~ 117 (387)
T 1ny5_A 75 VIVITGHG-TIKTAVEAM-KMGAYDFLTKPCMLEEIELTINKAIE 117 (387)
T ss_dssp EEEEEETT-CHHHHHHHH-TTTCCEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEEeCCC-CHHHHHHHH-hcCceEEecCCCCHHHHHHHHHHHHH
Confidence 44443332 222111221 22678999999999999888877653
No 241
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=97.52 E-value=0.00025 Score=67.56 Aligned_cols=117 Identities=14% Similarity=0.203 Sum_probs=82.1
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.+||++||++..+..+...|+.. +.+..+.++.+|++.+... .+|++++|..++..+ ....++.+++..+ ..
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~lp~~~---g~~~~~~l~~~~~--~~ 73 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEE--WVQVIICDQRMPGRT---GVDFLTEVRERWP--ET 73 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHS--CEEEEEEESCCSSSC---HHHHHHHHHHHCT--TS
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcC--CCCEEEEeCCCCCCc---HHHHHHHHHHhCC--CC
Confidence 37999999999999999999875 9999999999999988763 589999999886433 2345667766432 22
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.+++++...............|...++.||+....+...+..++.
T Consensus 74 ~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 118 (139)
T 2jk1_A 74 VRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAAR 118 (139)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred cEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHH
Confidence 333343322222211111122467899999999999998887663
No 242
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=97.49 E-value=0.00032 Score=72.36 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=85.8
Q ss_pred CceEEEeCCchhhHHHHHHHHHHcC-CEE-EEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQRLG-IQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCG 815 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~lG-~~v-~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~ 815 (993)
..+||+|||++..+..++..|+..| +.+ ..+.++.+|++.+... .+|++++|..++..+ ....++.+++..+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~---g~~~~~~lr~~~~- 78 (215)
T 1a04_A 5 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMN---GLETLDKLREKSL- 78 (215)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEEETTSTTSC---HHHHHHHHHHSCC-
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCc---HHHHHHHHHHhCC-
Confidence 3689999999999999999999875 887 7899999999988653 589999999886533 2346677776532
Q ss_pred CCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 816 FQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 816 ~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
...+++++............ ..|...++.||+....+...+..++..
T Consensus 79 -~~~ii~ls~~~~~~~~~~~~-~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 79 -SGRIVVFSVSNHEEDVVTAL-KRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp -CSEEEEEECCCCHHHHHHHH-HTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred -CCcEEEEECCCCHHHHHHHH-HcCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 23333333322222212221 237788999999999999999988753
No 243
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=97.47 E-value=0.00011 Score=68.06 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=82.3
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.++|++||++..+..+...|+..|+.+..+.++.++++.+.. ..+|++++|..+...++. ..++.+++..+ ..|
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~---~~~~~l~~~~~-~~~ 77 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS--KTPDVLLSDIRMPGMDGL---ALLKQIKQRHP-MLP 77 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSS--CCCSCEEECSCSSHHHHC---STHHHHHHHCT-TSC
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEeeecCCCCHH---HHHHHHHhhCC-CCC
Confidence 479999999999999999999999999999999999988754 358999999887543322 24455655422 123
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
.++ ++.......... ....|...++.||+....+...+..++.
T Consensus 78 ii~-~s~~~~~~~~~~-~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 78 VII-MTAHSDLDAAVS-AYQQGAFDYLPKPFDIDEAVALVERAIS 120 (124)
T ss_dssp CCC-BCCSTTSTTTTS-SCTTCCCCCBCSSCCHHHHHHHHHHHHH
T ss_pred EEE-EecCCCHHHHHH-HHhcCcceEeeCCCCHHHHHHHHHHHHH
Confidence 333 322222222222 2233677899999999999998887663
No 244
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.44 E-value=0.00013 Score=76.66 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=37.6
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCC----------CCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGP----------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~----------s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (993)
.|.|.|||+||+++++...|..+.+.+. ......|..|+|+.-+.. .+-++.+.|...
T Consensus 74 ~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~----~~~~v~v~S~~~ 141 (220)
T 2wer_A 74 VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL----VADRVQVISKSN 141 (220)
T ss_dssp EEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGG----TEEEEEEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhh----cCCeeEEEEecC
Confidence 5899999999999998888766543210 111233457899865432 344677777654
No 245
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=97.39 E-value=0.00034 Score=80.10 Aligned_cols=119 Identities=13% Similarity=0.196 Sum_probs=85.0
Q ss_pred ceEEEeCCchhhHHHHHHHHHH-cCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQR-LGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~-lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
.+||||||++..+..++..|+. .|+.|..+.++.+|++.+... ..+|++++|..|+..++ ...++.+++..+ .
T Consensus 4 ~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG---~ell~~l~~~~~--~ 77 (400)
T 3sy8_A 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDG---LAFLRHASLSGK--V 77 (400)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCH---HHHHHHHHHHTC--E
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCH---HHHHHHHHhcCC--C
Confidence 5899999999999999999998 588999999999999998652 36899999999875443 335566666531 2
Q ss_pred ceEEEEeccCCcc-----cccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 818 SKLFLLANSISSS-----RANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 818 ~~~~lla~~~~~~-----~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
+.+++ .++.... .........|...++.||+....+...+.+++..
T Consensus 78 ~~ii~-~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~ 128 (400)
T 3sy8_A 78 HSVIL-SSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNAR 128 (400)
T ss_dssp EEEEE-SCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred ceEEE-EcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHh
Confidence 33333 2332222 1111112336678999999999999999887753
No 246
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=97.39 E-value=0.00044 Score=71.71 Aligned_cols=115 Identities=13% Similarity=0.170 Sum_probs=81.8
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
++||+|||++..+..+...|+..|+.|..+.++.+|++.+.. ..+|+++ + ++.+ ....++.+++. +...|
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvi----l--p~~~-g~~~~~~lr~~-~~~~~ 70 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI--RNYDLVM----V--SDKN-ALSFVSRIKEK-HSSIV 70 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTT--SCCSEEE----E--CCTT-HHHHHHHHHHH-CTTSE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhc--CCCCEEE----e--CCCC-HHHHHHHHHhC-CCCCc
Confidence 479999999999999999999999999999999999998865 3578888 2 2222 24467777776 21224
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCC-cchHHHHHHHHHhcCC
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPL-RSSMLAASLQRAMGVG 865 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl-~~~~l~~~l~~~l~~~ 865 (993)
.++ ++............ ..|...++.||+ ....+...+..++...
T Consensus 71 ii~-lt~~~~~~~~~~~~-~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 71 VLV-SSDNPTSEEEVHAF-EQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp EEE-EESSCCHHHHHHHH-HHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred EEE-EECCCCHHHHHHHH-HcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 443 33322222111111 226788999999 9999999999988543
No 247
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=97.38 E-value=0.00032 Score=72.57 Aligned_cols=115 Identities=15% Similarity=0.161 Sum_probs=83.6
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCc
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQS 818 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (993)
.+||+|||++..+..+...|+..| .|..+.++.+|++.+ ..+|++++|..++..+ ....++.+++..+ ..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~----~~~dlvllD~~lp~~~---g~~~~~~lr~~~~--~~ 72 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE----EAFHVVVLDVMLPDYS---GYEICRMIKETRP--ET 72 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC----SCCSEEEEESBCSSSB---HHHHHHHHHHHCT--TS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc----CCCCEEEEeCCCCCCC---HHHHHHHHHhcCC--CC
Confidence 489999999999999999999999 999999999999765 5789999999886433 2345677776532 23
Q ss_pred eEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 819 KLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 819 ~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
++++++............ ..|...++.||+....+...+..++..
T Consensus 73 ~ii~lt~~~~~~~~~~~~-~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 73 WVILLTLLSDDESVLKGF-EAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp EEEEEESCCSHHHHHHHH-HHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 333333322221111111 236778999999999999999988853
No 248
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=97.37 E-value=0.00038 Score=63.45 Aligned_cols=59 Identities=17% Similarity=0.312 Sum_probs=48.8
Q ss_pred HHHHHHhhccccHhhHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001941 434 DVAKSQFLATVSHEIRTPMNGVLGMLDMLMDTELDVTQQDYVRTAQASGKALVSLINEVLDQAK 497 (993)
Q Consensus 434 ~~aKs~Fla~vSHELRTPL~~I~g~lelL~~~~l~~~q~~~l~~i~~s~~~L~~lIndlLd~sk 497 (993)
...+.+|++.+|||++||++.|.+.++.+.+. ..++.+.+...+.++..++++++++++
T Consensus 57 ~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (115)
T 3zrx_A 57 ADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYLR 115 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33467899999999999999999999977543 256778889999999999999988753
No 249
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=97.15 E-value=0.00035 Score=73.00 Aligned_cols=117 Identities=9% Similarity=0.100 Sum_probs=83.5
Q ss_pred ceEEEeCCchhhHHHHHHHHHHcC-CEE-EEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQRLG-IQV-EVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGF 816 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~~lG-~~v-~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (993)
.+||+|||++..+..+...|+..| +.+ ..+.++.+|++.+.. ..+|++++|..++..+ ....++.+++..+
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~--~~~dlvllD~~lp~~~---g~~~~~~lr~~~~-- 74 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPA--ARPDVAVLDVRLPDGN---GIELCRDLLSRMP-- 74 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHH--HCCSEEEECSEETTEE---HHHHHHHHHHHCT--
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh--cCCCEEEEeCCCCCCC---HHHHHHHHHHhCC--
Confidence 479999999999999999999987 884 579999999998865 3589999999886432 2345667776422
Q ss_pred CceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhc
Q 001941 817 QSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMG 863 (993)
Q Consensus 817 ~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~ 863 (993)
..++++++............ ..|...++.||+....+...+..++.
T Consensus 75 ~~~ii~lt~~~~~~~~~~~~-~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 120 (225)
T 3c3w_A 75 DLRCLILTSYTSDEAMLDAI-LAGASGYVVKDIKGMELARAVKDVGA 120 (225)
T ss_dssp TCEEEEGGGSSSHHHHHHHH-HHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 23344333322222211111 23677899999999999999988874
No 250
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=97.13 E-value=0.00053 Score=76.60 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=81.2
Q ss_pred ceEEEeCCchhhHHHHHHHHH-HcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCC
Q 001941 739 MKALVVDPRPIRAKVSRYHIQ-RLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQ 817 (993)
Q Consensus 739 ~rvLvvdd~~~~~~v~~~~L~-~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (993)
.+||||||++..+..++..|+ ..|+.|..+.++.+|++.+.. ..+|++++|..++..+ + ...++.+++......
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~~~--G-~~~~~~l~~~~~~~~ 93 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQ--IKPTVILQDLVMPGVD--G-LTLLAAYRGNPATRD 93 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHH--HCCSEEEEESBCSSSB--H-HHHHHHHTTSTTTTT
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCC--H-HHHHHHHhcCcccCC
Confidence 579999999999999999996 569999999999999998865 3589999999886543 2 345677776432223
Q ss_pred -ceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHH
Q 001941 818 -SKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRA 861 (993)
Q Consensus 818 -~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~ 861 (993)
|.+++.+. .......... ..|...++.||+....+...+...
T Consensus 94 ~~ii~~s~~-~~~~~~~~a~-~~Ga~~~l~Kp~~~~~l~~~v~~~ 136 (358)
T 3bre_A 94 IPIIVLSTK-EEPTVKSAAF-AAGANDYLVKLPDAIELVARIRYH 136 (358)
T ss_dssp SCEEEEESS-CCHHHHHHHH-HTTCSEEEESCCCHHHHHHHHHHH
T ss_pred CcEEEEeCC-CCHHHHHHHH-hcChheEeeccCCHHHHHHHHHHH
Confidence 44444332 2221111111 236789999999988887766543
No 251
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=96.99 E-value=0.00095 Score=71.90 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=38.2
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCC----------CCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGP----------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~----------s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (993)
.|.|.|||+||+++++...|..+.+.+. ......|..|+|+.-+..+ .-++.+.|...
T Consensus 116 ~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~v----a~~v~V~Sr~~ 183 (264)
T 1yc1_A 116 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVTVITKHN 183 (264)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHH----EEEEEEEEECT
T ss_pred EEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccC----CCEEEEEEecC
Confidence 5899999999999998777655443211 1112335578998766543 35677877654
No 252
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=96.97 E-value=0.00016 Score=78.16 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=36.5
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCC---------------CCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGP---------------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~---------------s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (993)
.|+|.|||+||+++++...|..+.+.+. ......|..|+|++-+..+. .++.|.|...
T Consensus 76 ~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va----~~v~V~Sk~~ 148 (269)
T 1qy5_A 76 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA----DKVIVTSKHN 148 (269)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTE----EEEEEEEECT
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhcc----ceEEEEEEec
Confidence 5899999999999998666644321100 01112245799987665443 5677777654
No 253
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=96.90 E-value=0.003 Score=65.63 Aligned_cols=119 Identities=8% Similarity=0.063 Sum_probs=80.0
Q ss_pred CceEEEeCCchhhHHHHHHHHHH-cCCEEEE-ecCHHHHHHH-HhcCCCcccEEEEeccccccCccchHHHHHHHHh-cC
Q 001941 738 GMKALVVDPRPIRAKVSRYHIQR-LGIQVEV-VSDQLQCLSQ-IASGSKIINMILVEQEVWEKDTSVSTLFVNNLRK-LG 813 (993)
Q Consensus 738 g~rvLvvdd~~~~~~v~~~~L~~-lG~~v~~-~~~~~~al~~-l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~-~~ 813 (993)
..+||+|||++..+..++..|+. .|+.+.. +.++.+++.. +. ...+|++++|..++..+ ....++.+++ ..
T Consensus 7 ~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~--~~~~dlvllD~~mp~~~---G~~~~~~lr~~~~ 81 (225)
T 3klo_A 7 KLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPE--SRSIQMLVIDYSRISDD---VLTDYSSFKHISC 81 (225)
T ss_dssp SEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSG--GGGCCEEEEEGGGCCHH---HHHHHHHHHHHHC
T ss_pred ceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhh--ccCCCEEEEeCCCCCCC---HHHHHHHHHHhhC
Confidence 46899999999999999999994 6998865 3555555543 32 35689999999886543 2345666766 32
Q ss_pred CCCCceEEEEeccCCcccccccCCCCCCCcccccCCcchHHHHHHHHHhcC
Q 001941 814 CGFQSKLFLLANSISSSRANTSTDGVSIPSVIMKPLRSSMLAASLQRAMGV 864 (993)
Q Consensus 814 ~~~~~~~~lla~~~~~~~~~~~~~~~~~~~~l~KPl~~~~l~~~l~~~l~~ 864 (993)
+ ..|.+++.+.. ........ ...|...++.||+....+...+..++..
T Consensus 82 ~-~~~ii~lt~~~-~~~~~~~~-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 129 (225)
T 3klo_A 82 P-DAKEVIINCPQ-DIEHKLLF-KWNNLAGVFYIDDDMDTLIKGMSKILQD 129 (225)
T ss_dssp T-TCEEEEEEECT-TCCHHHHT-TSTTEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred C-CCcEEEEECCc-chhHHHHH-HHhCCCEEEecCCCHHHHHHHHHHHHCC
Confidence 2 12444443322 22222222 2236778999999999999999988753
No 254
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=96.87 E-value=0.0004 Score=73.68 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=38.3
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCCC------------CcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPS------------ISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~s------------~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (993)
.|.|.|+|+||+++++...|..+.+.+.. .....|..|+|+.-+.. ..-++.|.|...
T Consensus 95 ~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~----~~~~v~V~Sr~~ 164 (235)
T 2ior_A 95 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI----VADKVTVRTRAA 164 (235)
T ss_dssp EEEEEECSSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGG----TEEEEEEEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHh----CcCeEEEEEecC
Confidence 48999999999999998888766442210 01123568999974422 334677777653
No 255
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=96.76 E-value=0.00024 Score=74.15 Aligned_cols=54 Identities=28% Similarity=0.287 Sum_probs=42.7
Q ss_pred CCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccCC-ceEEEE
Q 001941 910 GAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFLL-IAILVW 964 (993)
Q Consensus 910 g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~~-~~~~~~ 964 (993)
.+.|..+.|+.+|++.+. ...||+||+|++||++||++++++||+... .++++-
T Consensus 5 v~~v~~~~~~~~a~~~~~-~~~~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi 59 (237)
T 3cwo_X 5 VLIVDDATNGREAVEKYK-ELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVC 59 (237)
T ss_dssp EEEEECCCSSSTTHHHHH-HHCCSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEE
T ss_pred EEEEEECCCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 345556889999999885 467999999999999999999999997543 334333
No 256
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.71 E-value=0.0022 Score=73.05 Aligned_cols=49 Identities=27% Similarity=0.475 Sum_probs=35.7
Q ss_pred EEEEEEcCCCCChhh--------HhhccCCccccCC---CCcCcCCC-ccchHHHHHHHHH
Q 001941 638 IVSVEDTGQGIPLEA--------QSRIFTPFMQVGP---SISRTHGG-TGIGLSISKYLVG 686 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~--------~~~IFepF~q~~~---s~s~~~~G-tGLGLsI~k~LVe 686 (993)
.|+|.|+|.|||.+. .+.+|..++..+. ......+| .|.||+.+..+.+
T Consensus 64 ~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~ 124 (390)
T 1s16_A 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 (390)
T ss_dssp CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHHHHhhc
Confidence 389999999999998 6778888765421 11222344 8999999988874
No 257
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=96.19 E-value=0.0084 Score=74.20 Aligned_cols=116 Identities=9% Similarity=0.038 Sum_probs=80.2
Q ss_pred ceEEEeCCch-hh-------HHHHHHHHHHcCCEEEEecCHHHHHHHHhcCCCcccEEEEeccccccCc-cchHHHHHHH
Q 001941 739 MKALVVDPRP-IR-------AKVSRYHIQRLGIQVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDT-SVSTLFVNNL 809 (993)
Q Consensus 739 ~rvLvvdd~~-~~-------~~v~~~~L~~lG~~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~-~~~~~~~~~~ 809 (993)
++||||||++ .. ++.+...|++.|++|..+.++++|+..+... ..+|++++|..++..+. .....+++++
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~-~~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTT-CCCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCcccccccHHHHHHHH
Confidence 4799999998 77 8899999999999999999999999988653 34899999988754111 2223467888
Q ss_pred HhcCCCCCceEEEEeccC-CcccccccCCCCCCCcccccCCcchH-HHHHH
Q 001941 810 RKLGCGFQSKLFLLANSI-SSSRANTSTDGVSIPSVIMKPLRSSM-LAASL 858 (993)
Q Consensus 810 ~~~~~~~~~~~~lla~~~-~~~~~~~~~~~~~~~~~l~KPl~~~~-l~~~l 858 (993)
|+.+. ..|.+++.+.+. ........ ..|..+++.||+...+ +.+-+
T Consensus 80 R~~~~-~iPIi~lTa~~~~~~d~~~~l--~~gaddyi~kpf~~~efl~~ri 127 (755)
T 2vyc_A 80 HERQQ-NVPVFLLGDREKALAAMDRDL--LELVDEFAWILEDTADFIAGRA 127 (755)
T ss_dssp HHHST-TCCEEEEECHHHHHHTCSHHH--HHHCSEEEETTTSCHHHHHHHH
T ss_pred HHhCC-CCCEEEEecCCcchhhccHhH--hhcCCceEeCCCCCHHHHHHHH
Confidence 87642 236666555322 11111111 1256789999998887 54433
No 258
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=96.10 E-value=0.0028 Score=66.76 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=38.5
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCC----------CCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCCC
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGP----------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~----------s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~ 700 (993)
.|.|.|||+||+++++...|....+.+. ......|-.|+||+-+-.+ .-++.|.|....
T Consensus 80 ~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~v----ad~v~V~Sr~~~ 148 (228)
T 3t0h_A 80 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVTVITKHND 148 (228)
T ss_dssp EEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGT----EEEEEEEEECTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhcc----CCEEEEEEecCC
Confidence 5899999999999998777655432110 1122346678998755322 237888887644
No 259
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=95.93 E-value=0.002 Score=68.31 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=36.1
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCCCC---------------cCcCCCccchHHHHHHHHHHcCCEEEEEEeCCC
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGPSI---------------SRTHGGTGIGLSISKYLVGRMKGEIGFVSIPNI 700 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~s~---------------s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g~ 700 (993)
.|.|.|||+||+++++...|..+.+.+... ....|..|+|+.-+..+ .-++.+.|....
T Consensus 80 ~i~I~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~v----a~~v~V~Sr~~~ 153 (236)
T 2gqp_A 80 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLV----ADKVIVTSKHNN 153 (236)
T ss_dssp EEEEEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGT----EEEEEEEEECTT
T ss_pred EEEEEECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhc----CCEEEEEEeCCC
Confidence 589999999999999888776554321100 00112368887644433 367888887643
No 260
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei}
Probab=95.52 E-value=0.34 Score=51.76 Aligned_cols=171 Identities=15% Similarity=0.148 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhHhHHHHHHHHHhcccCCCCCCCCCHHHHHHHHhhhhhcCCCcceeeee--c
Q 001941 109 SQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYA--V 186 (993)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~id~~~f~~~t~~~~~~~p~i~~~~~~--~ 186 (993)
.+..+..++.+...++..|..++..++.....++.||..+... ...+++.+..+..+.+..+|.+.++... |
T Consensus 7 ~~~~~~~~~~~~~~a~~~a~~i~~~l~~~~~~~~~la~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 80 (290)
T 3lib_A 7 TQEEKLAYQQSVEMASNYANQFDADMKANLAIARTISTTMESY------ETADRDEALLILENLLRDNPHLLGTYVAFEP 80 (290)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CSCCHHHHHHHHHHHHHTCTTCSEEEEEEST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhCCCeEEEEEEEcC
Confidence 4455566677788899999999999999999999999887752 2458889999999999999999776543 2
Q ss_pred ccCchhHHHHHHHhcceeeecccCCCCCCCCCCCCCCCCccceeEeecCCccceeeeccccCcccHHHHHHHHhcCCccc
Q 001941 187 RVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVL 266 (993)
Q Consensus 187 ~v~~~er~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~~~~~~~~~~g~D~~s~~~~r~~i~~Ar~tg~~~~ 266 (993)
--....-..|...- -......|.|..+...+ . +.+....+...|+...+|..+|+.++
T Consensus 81 ~~~~~~~~~~~~~~-------------------~~~~~G~~~~~~~~~~g--~-~~~~~~~d~~~r~w~~~a~~~~~~~~ 138 (290)
T 3lib_A 81 DAFDGKDAEYTNSP-------------------AHDGTGRFVPYWNKMNG--T-ASVAPLLHYDSSDYYQLPKATEKDVL 138 (290)
T ss_dssp TTTTSCHHHHTTST-------------------TCCTTCCCCEEEECTTS--S-CEEEECSCTTTSHHHHHHHHHCSCEE
T ss_pred CCCCCCchhhcCCC-------------------CCCCCceEEEEEEecCC--e-EEEeecCCCCcchHHHHHHHcCCCEE
Confidence 22111111111100 00112234443333211 1 11222345566889999999999999
Q ss_pred ccceeecccCCceeEEEEEeeccCCCCCCChHHHHHhhcceeeeeeehHHHHHHH
Q 001941 267 TAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKL 321 (993)
Q Consensus 267 t~p~~l~~~~~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~~~~v~~l~~~l 321 (993)
|.|+.- ++.+.+.+..|++.. ..+.|+++..++++.+.+.+
T Consensus 139 s~p~~~--~~~~~i~~~~pi~~~------------g~~~Gvl~~~i~l~~l~~~~ 179 (290)
T 3lib_A 139 TEPYFY--EGVFMVSYVSPIMKE------------GEFAGIGGVDVSLEYVDEVV 179 (290)
T ss_dssp CCCEEE--TTEEEEEEEEEEEET------------TEEEEEEEEEEEHHHHHHHH
T ss_pred EcCEEe--CCeEEEEEEEEEEEC------------CEEEEEEEEEEeHHHHHHHH
Confidence 999874 567888889999852 13469999999998876643
No 261
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=95.38 E-value=0.57 Score=47.74 Aligned_cols=155 Identities=15% Similarity=0.222 Sum_probs=110.2
Q ss_pred HHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHhHHHHHHHHHhcccCCCCCCCCCHHHHHHHHhhhhhcCCCcceeeee
Q 001941 106 YMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYA 185 (993)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~id~~~f~~~t~~~~~~~p~i~~~~~~ 185 (993)
+...+..+..++.+...++..|..+.+.++...+.+..||..+.. .. |.+.+..+..+....+|.+.++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~a~~~a~~i~~~l~~~~~~l~~la~~~~~------~~--~~~~~~~~L~~~~~~~~~~~~i~i~ 76 (217)
T 4dah_A 5 KEKDTIAAEHKQEASVLLNLHRNKINYLIGETMARMTSLSIAIDR------PV--DIKKMQSILEKTFDSEPRFSGLYFL 76 (217)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS------SC--CHHHHHHHHHHHHTTCTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CC--CHHHHHHHHHHHHhcCCcccEEEEE
Confidence 344566677778888889999999999999999999999984432 21 7888999999888888998887765
Q ss_pred cccCchhHHHHHHHhcceeeecccCCCCCCCCCCCCCCCCccceeEeecCCccceeeeccccCcccHHHHHHHHhcCCcc
Q 001941 186 VRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGV 265 (993)
Q Consensus 186 ~~v~~~er~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~~~~~~~~~~g~D~~s~~~~r~~i~~Ar~tg~~~ 265 (993)
-. -|..+..- + + ...++|+ ..|+...+|+.+|+.+
T Consensus 77 d~------------~G~~~~~~------------~--------------~---~~~~~~~----~~r~~f~~a~~~~~~~ 111 (217)
T 4dah_A 77 NA------------KGDVTAST------------T--------------E---LKTKVNL----ADRSFFIKAKETKKTV 111 (217)
T ss_dssp ET------------TCBEEEES------------S--------------C---CSSCCBC----TTSHHHHHHHHHCSCE
T ss_pred CC------------CCcEEEec------------C--------------C---CCCCCCc----chhHHHHHHHhcCCcE
Confidence 21 12111110 0 0 0013343 3477888889999999
Q ss_pred cccceeecccCCceeEEEEEeeccCCCCCCChHHHHHhhcceeeeeeehHHHHHHHHHhh
Q 001941 266 LTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQL 325 (993)
Q Consensus 266 ~t~p~~l~~~~~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~~~~v~~l~~~ll~~~ 325 (993)
++.|+.-..++.+.+.+..|++..+ ..+.|++++.++++.+.+. +..+
T Consensus 112 is~~~~~~~~g~~~i~ia~pi~~~~-----------g~~~Gvl~~~i~l~~l~~~-~~~~ 159 (217)
T 4dah_A 112 ISDSYSSRITGQPIFTICVPVLDSK-----------RNVTDYLVAAIQIDYLKNL-INLL 159 (217)
T ss_dssp ECCCEECTTTCSEEEEEEEEEECTT-----------SCEEEEEEEEEEHHHHHHH-HHHH
T ss_pred EeceEEcCCCCCEEEEEEEEEECCC-----------CCEEEEEEEEEcHHHHHHH-HHhc
Confidence 9999875556778889999999732 1346999999999987654 4443
No 262
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=95.37 E-value=0.019 Score=65.33 Aligned_cols=49 Identities=35% Similarity=0.554 Sum_probs=32.8
Q ss_pred EEEEEEcCCCCChhhH--------hhccCCccccC---CCCcCcCCC-ccchHHHHHHHHH
Q 001941 638 IVSVEDTGQGIPLEAQ--------SRIFTPFMQVG---PSISRTHGG-TGIGLSISKYLVG 686 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~--------~~IFepF~q~~---~s~s~~~~G-tGLGLsI~k~LVe 686 (993)
.|+|.|+|.|||.+.. +-+|..+...+ ....+..+| .|.||+.+..+.+
T Consensus 67 ~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~ 127 (391)
T 1ei1_A 67 SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ 127 (391)
T ss_dssp CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred EEEEEECCCCcccCcccccCcchHHHhheeccccCCcCCCcccccCCccccchHHHHHhcC
Confidence 3899999999999974 34676544321 111222334 8999999988775
No 263
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=95.13 E-value=0.013 Score=63.21 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=34.2
Q ss_pred EEEEEEcCCCCChhhHhhccC----C----cc---ccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001941 638 IVSVEDTGQGIPLEAQSRIFT----P----FM---QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFe----p----F~---q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (993)
.|+|.|||+||+++++..-+. . |. +.+.......|-.|+|++-|-.+ .-++.|.|...
T Consensus 94 tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~v----adkV~V~Sk~~ 162 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLV----ADKVIVYTKNN 162 (281)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGT----EEEEEEEEECT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccc----cCEEEEEEecC
Confidence 589999999999998654331 1 11 11011123456789998654322 34567777654
No 264
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=95.13 E-value=0.32 Score=50.85 Aligned_cols=157 Identities=14% Similarity=0.107 Sum_probs=113.7
Q ss_pred HHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHhHHHHHHHHHhcccCCCCCCCCCHHHHHHHHhhhhhcCCCcceeee
Q 001941 105 WYMSSQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAY 184 (993)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~id~~~f~~~t~~~~~~~p~i~~~~~ 184 (993)
|..+....+..++.....+...|+.+.+.|+.....++.++..+.. ...|...+..+..+.+..+|.+.++.+
T Consensus 3 ~~~r~~~~~~~~~~~~~~a~~~a~~i~~~l~~~~~~l~~la~~~~~-------~~~~~~~~~~~L~~~~~~~~~~~~i~i 75 (254)
T 3lif_A 3 YDSHKIALAQSETEMRNLSHSLAEHATHTFQGADVVLDDIVSFMKW-------RPHPSPVFNERLRALADNLPQLSDVAI 75 (254)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------CSSCCTHHHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCChHHHHHHHHHHHhcCCccceEEE
Confidence 4556777888888889999999999999999999999999998764 235667788888888888999988877
Q ss_pred ecccCchhHHHHHHHhcceeeecccCCCCCCCCCCCCCCCCccceeEeecCCccceeeeccccCcccHHHHHHHHh--cC
Q 001941 185 AVRVLRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARA--SG 262 (993)
Q Consensus 185 ~~~v~~~er~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~~~~~~~~~~g~D~~s~~~~r~~i~~Ar~--tg 262 (993)
.-. .|. +.. ... ....++| ..+|+....|++ +|
T Consensus 76 ~d~------------~G~-~~~--------------------------s~~--~~~~~~~----~~~r~~f~~a~~~~~~ 110 (254)
T 3lif_A 76 LDA------------DGQ-LTY--------------------------ASV--KPVPALD----NSDRSYFRYHRANDDH 110 (254)
T ss_dssp ECT------------TSB-EEE--------------------------ESS--SSEECCB----CTTSHHHHHHHHCCCC
T ss_pred ECC------------CCC-Eec--------------------------CCC--CCCCCCC----cccHHHHHHHHhCCCC
Confidence 521 121 100 000 0012334 345778888888 78
Q ss_pred CcccccceeecccCCceeEEEEEeeccCCCCCCChHHHHHhhcceeeeeeehHHHHHHHHHhh
Q 001941 263 KGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQL 325 (993)
Q Consensus 263 ~~~~t~p~~l~~~~~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~~~~v~~l~~~ll~~~ 325 (993)
+.+++.|+.-..++.+.+.+..|++..+ ..+.|++++.++++.+.+ ++..+
T Consensus 111 ~~~is~p~~~~~~g~~~i~~~~pi~~~~-----------g~~~Gvl~~~i~l~~l~~-~~~~~ 161 (254)
T 3lif_A 111 TLLITGPIQSRTSGVWVFVVSRRLETTD-----------GKFFGVVVATIESEYFST-FYKTF 161 (254)
T ss_dssp CCEEEEEEECTTTCCEEEEEEEEEECTT-----------CCEEEEEEEEECHHHHHH-HHTTS
T ss_pred CeEECCceecCCCCcEEEEEEeeeeCCC-----------CCEeEEEEEEECHHHHHH-HHHhc
Confidence 9999999875556778888999998632 134699999999987665 44444
No 265
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=95.12 E-value=0.0062 Score=64.98 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=35.7
Q ss_pred EEEEEEcCCCCChhhHhhccCCcccc----------CCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTPFMQV----------GPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~----------~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (993)
.|.|.|||+||+++++..-|....+. +.......|-.|+||+-+-.+ .-++.|.|...
T Consensus 108 ~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~V----adkv~V~Sr~~ 175 (256)
T 3o0i_A 108 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLV----AEKVTVITKHN 175 (256)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGT----EEEEEEEEECT
T ss_pred EEEEecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhcc----CCeEEEEEcCC
Confidence 58999999999999886555322110 001123446678998765322 23677777654
No 266
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=94.95 E-value=0.044 Score=64.85 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=29.9
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCC------------CCcCcCCCccchHHHHHHH
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGP------------SISRTHGGTGIGLSISKYL 684 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~------------s~s~~~~GtGLGLsI~k~L 684 (993)
.|+|.|||+||+++++..-|....+.+. ......|..|+|++-+-.+
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~V 133 (559)
T 1y4s_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIV 133 (559)
T ss_dssp EEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhc
Confidence 5899999999999998776654322210 1122346678997655444
No 267
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A*
Probab=94.62 E-value=0.45 Score=50.79 Aligned_cols=172 Identities=15% Similarity=0.171 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhHhHHHHHHHHHhcccCCCCCCCCCHHHHHHHHhhhhhcCCCcceeeeeccc
Q 001941 109 SQATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRV 188 (993)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~id~~~f~~~t~~~~~~~p~i~~~~~~~~v 188 (993)
....+..++.+...++..|..++..++.....++.||..+... ...+++.+..+..+.+..+|.+.++..+-.
T Consensus 8 ~~~~~~~~~~~~~~a~~~a~~i~~~l~~~~~~~~~la~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 80 (291)
T 3li9_A 8 SQEEKLAYEKSIEMAGNYANQFDAQMEANQAIARTLACTMAEY------GSQDREEAMSIIKRILNENPQLIGVYLGYE- 80 (291)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------TTCCHHHHHHHHHHHHHTCTTCSEEEEEEC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhCCCeEEEEEEEc-
Confidence 4445556677788899999999999999999999999987752 235788899999999999999988755421
Q ss_pred CchhHHHHHHHhcceeeecccCCCCCCCCCCCCCCCCccceeEeecCCccceeeeccccCcccHHHHHHHHhcCCccccc
Q 001941 189 LRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTA 268 (993)
Q Consensus 189 ~~~er~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~~~~~~~~~~g~D~~s~~~~r~~i~~Ar~tg~~~~t~ 268 (993)
+. .|...-+ .. .... .......|.|-.+... ..+ .+....+...|+...+|..+|+.++|.
T Consensus 81 ~~----~~~~~~~----~~-----~~~~---~~~~~G~~~~~~~~~~--g~~-~~~~~~d~~~~~w~~~a~~~~~~~~s~ 141 (291)
T 3li9_A 81 PD----AFDGRDK----NY-----INAP---GHDSTGRFVPYCNKIN--GPV-IIEPLVHYDSSDYYQLPKTTGKDTLTE 141 (291)
T ss_dssp TT----TTTSCGG----GC-----TTCT---TCCTTCCCCEEEECTT--SSC-EEEECCCTTTSHHHHHHHHHCSCEECC
T ss_pred CC----CCCCCch----hh-----cCCC---CCCCCccEEEEEEecC--CeE-EEEecCCCccchHHHHHHHhCCCEEEc
Confidence 11 0100000 00 0000 0011233555433321 111 122233455688999999999999999
Q ss_pred ceeecccCCceeEEEEEeeccCCCCCCChHHHHHhhcceeeeeeehHHHHHH
Q 001941 269 PFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEK 320 (993)
Q Consensus 269 p~~l~~~~~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~~~~v~~l~~~ 320 (993)
|+.- ++.+.+.+..|++.. ..+.|+++..++++.+.+.
T Consensus 142 p~~~--~~~~~i~~~~pi~~~------------g~~~Gvl~~~i~l~~l~~~ 179 (291)
T 3li9_A 142 PYFY--EGIFMVSYDSPIFKN------------GEFAGIAGVDVPLEYVDDV 179 (291)
T ss_dssp CEEE--TTEEEEEEEEEEEET------------TEEEEEEEEEEECHHHHHH
T ss_pred cEEe--CCEEEEEEEEEEEEC------------CEEEEEEEEEeeHHHHHHH
Confidence 9873 567888889999852 1346999999999886654
No 268
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.044 Score=66.06 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=18.3
Q ss_pred EEEEEEcCCCCChhhHhhccCC
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTP 659 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFep 659 (993)
.|+|.|||+||+.+++..-|..
T Consensus 74 ~I~I~DnGiGMt~edl~~~l~t 95 (677)
T 2cg9_A 74 VLEIRDSGIGMTKAELINNLGT 95 (677)
T ss_dssp EEEEEECSCCCCHHHHHGGGSS
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999988766543
No 269
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}
Probab=94.50 E-value=1.2 Score=46.73 Aligned_cols=165 Identities=13% Similarity=0.074 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhHhHHHHHHHHHhcccCCCCCCC-CCHHHHHHHHhhhhhcCCCcceeeeeccc
Q 001941 110 QATEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSA-IDQMTFTRYTERTAFERPLTSGVAYAVRV 188 (993)
Q Consensus 110 ~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-id~~~f~~~t~~~~~~~p~i~~~~~~~~v 188 (993)
...+..++.+...++..+..++..++...+.++.||..+.... .... .+++.+..+..+.+..+|.+.++...-.
T Consensus 5 ~~~~~~~~~~~~~a~~~a~~i~~~l~~~~~~~~~la~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 80 (274)
T 3lic_A 5 SIEKRLYENLAQESSHSASRLQFLLEHAQANTQGLSDFIGLLA---DKDDINNPEKLKTVLTNRIQRNPDFFGSAIAFK- 80 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CTTTTTCHHHHHHHHHHHHHHCTTCCEEEEEEC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccccCCHHHHHHHHHHHHhcCcceeEEEEEec-
Confidence 4455666777888999999999999999999999999887531 1223 6788899999999999999977654311
Q ss_pred CchhHHHHHHHhcceeeecccCCCCCCCCCCCCCCCCccceeEeecCCccceeeecc---ccCcc--cHHHHHHHHhcCC
Q 001941 189 LRSEREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDM---LSGKE--DRENVLRARASGK 263 (993)
Q Consensus 189 ~~~er~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~~~~~~~~~~g~D~---~s~~~--~r~~i~~Ar~tg~ 263 (993)
+. ..++ . ..|.|..+..... +..-+. ..++. .|+....|+.+|+
T Consensus 81 ~~----------------------~~~~----~---~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~~~w~~~a~~~~~ 129 (274)
T 3lic_A 81 PN----------------------TFPN----K---KLFSPYVYRSGSG--FNYLDIGADGYDYTDGNWDWWSKAINQVG 129 (274)
T ss_dssp TT----------------------SSTT----C---SCBCEEEEECSSS--EEEEEHHHHTCCTTSSSCHHHHTTTTTSS
T ss_pred Cc----------------------cCCC----c---cccceeEEECCCc--eEEEeccccCCCCCCCCCcHHHHHHhcCC
Confidence 00 0000 0 3555654433221 111111 12344 6889999999999
Q ss_pred cccccceeecccC-CceeEEEEEeeccCCCCCCChHHHHHhhcceeeeeeehHHHHHHH
Q 001941 264 GVLTAPFRLLKTN-RLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKL 321 (993)
Q Consensus 264 ~~~t~p~~l~~~~-~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~~~~v~~l~~~l 321 (993)
.++|.|+.-..++ .+.+.+..|++..+ .+.|+++..++++.+.+.+
T Consensus 130 ~~~s~~~~~~~~~~~~~i~~~~pi~~~g------------~~~Gv~~~~i~l~~l~~~~ 176 (274)
T 3lic_A 130 GYWSKAYFDEGAGNVLMITYAVPFGVQP------------DYFGVTTVDLALDRLPEQL 176 (274)
T ss_dssp CEECCCEECTTTTCSEEEEEEEEESCTT------------CCCEEEEEEEEGGGHHHHH
T ss_pred CEEEeeEEcCCCCceEEEEEEEEEccCC------------EEEEEEEEEEEHHHHHHHh
Confidence 9999999755444 47888889998621 2469999999999866543
No 270
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=94.22 E-value=0.032 Score=57.51 Aligned_cols=48 Identities=23% Similarity=0.336 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCChhhH--------hhc-cCCccccCC---CCcCcCCCccchHHHHHHHH
Q 001941 638 IVSVEDTGQGIPLEAQ--------SRI-FTPFMQVGP---SISRTHGGTGIGLSISKYLV 685 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~--------~~I-FepF~q~~~---s~s~~~~GtGLGLsI~k~LV 685 (993)
.|+|.|+|.|||.+.. +.+ +.+....+- ......|=.|.||+.+..+.
T Consensus 50 ~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~~~~~s~GfrGeglssinalS 109 (201)
T 3fv5_A 50 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALS 109 (201)
T ss_dssp CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC---------------------CHHHHHTE
T ss_pred EEEEEECCCCcCcccccccCcchhheeeeeeccccCcCCCcccccCcccceecchhhccc
Confidence 3899999999999874 333 344332111 00112233688898877765
No 271
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=94.00 E-value=0.016 Score=61.08 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=33.8
Q ss_pred EEEEEEcCCCCChhhHhhccC--------Ccc---ccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001941 638 IVSVEDTGQGIPLEAQSRIFT--------PFM---QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFe--------pF~---q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (993)
.|+|.|||+||+++++..-+. .|. +.+ ......|-.|+|++-+-.+ .-++.|.|..+
T Consensus 87 ~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~-~d~~~IGqFGvGfySaf~v----adkv~V~Sk~~ 154 (239)
T 3nmq_A 87 TLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAG-ADISMIGQFGVGFYSAYLV----AEKVVVITKHN 154 (239)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTT-CCGGGGGGGTCGGGGGGGT----EEEEEEEEECT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhccc-CCcccccccCccccccccc----CCEEEEEEeeC
Confidence 589999999999998743221 121 111 1123456789998765333 23466666543
No 272
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=93.69 E-value=0.013 Score=60.74 Aligned_cols=169 Identities=9% Similarity=0.074 Sum_probs=94.5
Q ss_pred EEEEecCHHHHHHHHhcCCCcccEEEEeccccccCccchHHHHHHHHhcCCCCCceEEEEeccCCcccccccCCCCCCCc
Q 001941 764 QVEVVSDQLQCLSQIASGSKIINMILVEQEVWEKDTSVSTLFVNNLRKLGCGFQSKLFLLANSISSSRANTSTDGVSIPS 843 (993)
Q Consensus 764 ~v~~~~~~~~al~~l~~~~~~~~~ilid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lla~~~~~~~~~~~~~~~~~~~ 843 (993)
.|..+.++.+|++.+... .+|++++|..++..++ ...++.+++.... .+.++++.... ....... ...|...
T Consensus 7 ~v~~~~~~~~a~~~~~~~--~~dlvl~D~~~p~~~g---~~~~~~l~~~~~~-~~i~vi~~~~~-~~~~~~~-~~~Ga~~ 78 (237)
T 3cwo_X 7 IVDDATNGREAVEKYKEL--KPDIVTMDITMPEMNG---IDAIKEIMKIDPN-AKIIVCSAMGQ-QAMVIEA-IKAGAKD 78 (237)
T ss_dssp EEECCCSSSTTHHHHHHH--CCSCEEEECCSTTSSH---HHHHHHHHHHSSS-CCEEEECCSST-HHHHHHH-HHTTCCE
T ss_pred EEEECCCHHHHHHHHHhc--CCCEEEEeCCCCCCCH---HHHHHHHHHhCCC-CCEEEEECCCC-HHHHHHH-HHCCHHh
Confidence 344567788888877653 4789999998865432 3456677664322 23334433322 1111111 1236778
Q ss_pred ccccC--CcchHHHHHHHHHhcCCCCCCcccCCCCcchhhhccCCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHH
Q 001941 844 VIMKP--LRSSMLAASLQRAMGVGNKGNIRNWELPSMSLRHLLLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKK 921 (993)
Q Consensus 844 ~l~KP--l~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~e 921 (993)
++.|| +....+...+.+.++.. ..++.+|+...... ..+...+.......+..+
T Consensus 79 ~l~kp~~~~~~~l~~~i~~~~~~~---------------------~~~~~~d~~~~~~~---~~v~~~~g~~~~~~~~~~ 134 (237)
T 3cwo_X 79 FIVNTAAVENPSLITQIAQTFGSQ---------------------AVVVAIDAKRVDGE---FMVFTYSGKKNTGILLRD 134 (237)
T ss_dssp EEESHHHHHCTHHHHHHHHHHTGG---------------------GEEEEEEEEESSSC---EEEEETTTTEEEEEEHHH
T ss_pred eEeCCcccChHHHHHHHHHHhCCC---------------------ceEEEeeecccCCc---EEEEEeCCccccccCHHH
Confidence 99998 77777777776655311 12334443211000 000001112223334555
Q ss_pred HHHHhCCCCCCcEEEEcC-CCCCCCHH--HHHHHHhccCCceEEEE
Q 001941 922 ATELLMPPHQFDACFMDI-QMPEMDGY--EMLPCFESFLLIAILVW 964 (993)
Q Consensus 922 Al~~~~~~~~~DlIlmDi-~MP~mdG~--e~~~~Ir~~~~~~~~~~ 964 (993)
.+..+......+++++++ .++.++|+ +.++++++....|+|.-
T Consensus 135 ~i~~~~~~~~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~ 180 (237)
T 3cwo_X 135 WVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS 180 (237)
T ss_dssp HHHHHHHHTCSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEE
T ss_pred HHHHHhhcCCCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEec
Confidence 555553233457899997 78888885 47888888889999875
No 273
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=93.67 E-value=0.039 Score=66.47 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=18.3
Q ss_pred EEEEEEcCCCCChhhHhhccCC
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTP 659 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFep 659 (993)
.|+|.|||+||+++++..-|..
T Consensus 93 ~I~I~DnGiGMt~edl~~~l~t 114 (666)
T 2o1u_A 93 LLHVTDTGVGMTREELVKNLGT 114 (666)
T ss_dssp EEEEEECSCCCCHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhh
Confidence 4899999999999988766644
No 274
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=93.28 E-value=0.05 Score=65.27 Aligned_cols=58 Identities=14% Similarity=0.247 Sum_probs=33.6
Q ss_pred EEEEEEcCCCCChhhHhhccCCccccCC------------CCcCcCCCccchHHHHHHHHHHcCCEEEEEEeCC
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTPFMQVGP------------SISRTHGGTGIGLSISKYLVGRMKGEIGFVSIPN 699 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~q~~~------------s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~~g 699 (993)
.|+|.|||+||+++++..-|....+.+. ......|..|+|++=+-.+. -++.|.|...
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~Va----dkV~V~Sr~~ 144 (624)
T 2ioq_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA----DKVTVRTRAA 144 (624)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHE----EEEEEEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcC----CeEEEEECCC
Confidence 5899999999999987665533211110 01112244688987555543 2466666543
No 275
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=93.08 E-value=0.13 Score=57.85 Aligned_cols=20 Identities=5% Similarity=0.041 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHHHHHhcc
Q 001941 549 DPGRFRQIITNLMGNSIKFT 568 (993)
Q Consensus 549 D~~rL~QIL~NLL~NAiKfT 568 (993)
|+..+..++.-||+||+...
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~ 46 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEA 46 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhhhHhHH
Confidence 66789999999999999964
No 276
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=90.12 E-value=0.27 Score=51.45 Aligned_cols=48 Identities=29% Similarity=0.474 Sum_probs=28.4
Q ss_pred EEEEEcCCCCChhh-------HhhccCCcccc---CC-CCcCcCCCccchHHHHHHHHH
Q 001941 639 VSVEDTGQGIPLEA-------QSRIFTPFMQV---GP-SISRTHGGTGIGLSISKYLVG 686 (993)
Q Consensus 639 i~V~DtG~GI~~e~-------~~~IFepF~q~---~~-s~s~~~~GtGLGLsI~k~LVe 686 (993)
|+|.|+|.|||.+. .+-+|...... +. +.....|=.|.|++.+..+-+
T Consensus 74 i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS~ 132 (226)
T 4emv_A 74 LTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSS 132 (226)
T ss_dssp EEEEECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHHHHHHTEE
T ss_pred EEEEEcCCCccccccccCceehheeEEeecccCccCccceEeccccccccchhhhhccc
Confidence 89999999999997 55566322211 11 111122337899998877654
No 277
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=90.07 E-value=0.36 Score=50.36 Aligned_cols=48 Identities=31% Similarity=0.441 Sum_probs=26.7
Q ss_pred EEEEEcCCCCChhhH--------hhccCCcccc---CCCC-cCcCCCccchHHHHHHHHH
Q 001941 639 VSVEDTGQGIPLEAQ--------SRIFTPFMQV---GPSI-SRTHGGTGIGLSISKYLVG 686 (993)
Q Consensus 639 i~V~DtG~GI~~e~~--------~~IFepF~q~---~~s~-s~~~~GtGLGLsI~k~LVe 686 (993)
|+|+|+|.|||.+.. +-+|...... +... ....|=.|.|++.+..+-+
T Consensus 69 i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS~ 128 (220)
T 4duh_A 69 VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ 128 (220)
T ss_dssp EEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCCTTC--------CCCHHHHHHTEE
T ss_pred EEEEECCcCcccccccccCcchhhheeeecccCCCcCCCccccccCccceecchhccccc
Confidence 899999999999864 3345221111 1111 1122337899998887754
No 278
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=89.70 E-value=0.34 Score=55.06 Aligned_cols=48 Identities=23% Similarity=0.461 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCChhh--------HhhccCCcccc---CC-CCcCcCCCccchHHHHHHHH
Q 001941 638 IVSVEDTGQGIPLEA--------QSRIFTPFMQV---GP-SISRTHGGTGIGLSISKYLV 685 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~--------~~~IFepF~q~---~~-s~s~~~~GtGLGLsI~k~LV 685 (993)
.|+|.|+|.|||.+. .+-+|...... +. ...-..|=.|.|++.+..+-
T Consensus 87 ~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAlS 146 (400)
T 1zxm_A 87 LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 146 (400)
T ss_dssp EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTE
T ss_pred EEEEEECCCcccCccccccCccchhheeeeecccCCCCCCcccccCCccccceeeeEEec
Confidence 489999999999986 33455422111 11 11112234799999887764
No 279
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=89.34 E-value=0.18 Score=61.78 Aligned_cols=63 Identities=10% Similarity=0.123 Sum_probs=54.2
Q ss_pred HHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHhccC-CceEEEEc
Q 001941 900 KVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFESFL-LIAILVWK 965 (993)
Q Consensus 900 ~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir~~~-~~~~~~~~ 965 (993)
+.|...|++.||+|..+.++.+|+..++....+++|++|++|+ +.+++++||+.. .+||.+..
T Consensus 20 ~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~~~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~ 83 (715)
T 3n75_A 20 RELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDKY---NLELCEEISKMNENLPLYAFA 83 (715)
T ss_dssp HHHHHHHHHTTCEEECCSSHHHHHHHHHHCTTEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEEC
T ss_pred HHHHHHHHHCCcEEEEeCCHHHHHHHHHhCCCceEEEEecccc---HHHHHHHHHHhCCCCCEEEEe
Confidence 3456889999999999999999999996544689999999997 789999999665 99998874
No 280
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=87.04 E-value=0.76 Score=52.45 Aligned_cols=50 Identities=22% Similarity=0.522 Sum_probs=31.0
Q ss_pred EEEEEEcCCCCChhhHhh--------ccCCcccc---CCCCcCc-CCCccchHHHHHHHHHH
Q 001941 638 IVSVEDTGQGIPLEAQSR--------IFTPFMQV---GPSISRT-HGGTGIGLSISKYLVGR 687 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~--------IFepF~q~---~~s~s~~-~~GtGLGLsI~k~LVe~ 687 (993)
.|+|.|+|.|||.+..+. ||...... +....+. .|=.|.|.+.|.-|-+.
T Consensus 99 sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS~~ 160 (418)
T 1pvg_A 99 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTE 160 (418)
T ss_dssp EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEEE
T ss_pred EEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCceeccCCccceeeeeeeeccce
Confidence 489999999999886443 55433221 1111222 23379999988877544
No 281
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=86.03 E-value=0.82 Score=46.80 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHHHHhccc---CCeEEEEE
Q 001941 549 DPGRFRQIITNLMGNSIKFTE---KGHIFVTV 577 (993)
Q Consensus 549 D~~rL~QIL~NLL~NAiKfT~---~G~I~v~v 577 (993)
++..+..++.-|+.||+...- ...|.|.+
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i 59 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVI 59 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEE
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEE
Confidence 567788888888888888532 33555544
No 282
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=79.81 E-value=0.66 Score=52.71 Aligned_cols=49 Identities=27% Similarity=0.487 Sum_probs=24.6
Q ss_pred EEEEEcCCCCChhhH--------hhccCCcccc---CCCCcCcCCC-ccchHHHHHHHHHH
Q 001941 639 VSVEDTGQGIPLEAQ--------SRIFTPFMQV---GPSISRTHGG-TGIGLSISKYLVGR 687 (993)
Q Consensus 639 i~V~DtG~GI~~e~~--------~~IFepF~q~---~~s~s~~~~G-tGLGLsI~k~LVe~ 687 (993)
|+|.|+|.|||.+.. +-+|...... +.......+| .|.|++.+..+-+.
T Consensus 84 I~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS~~ 144 (408)
T 3lnu_A 84 CEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALSTK 144 (408)
T ss_dssp EEEEECSSCCCCSBCTTTCSBHHHHHHHCC--------------------CHHHHHHTEEE
T ss_pred EEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCccccccceehhccCe
Confidence 899999999999874 3445222111 1111112233 78999988877643
No 283
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=78.68 E-value=0.9 Score=48.16 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=34.9
Q ss_pred EEEEEEcCCCCChhhHhhccCCcc-----------ccCCCCcCcCCCccchHHHHHHHHHHcCCEEEEEEe
Q 001941 638 IVSVEDTGQGIPLEAQSRIFTPFM-----------QVGPSISRTHGGTGIGLSISKYLVGRMKGEIGFVSI 697 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~~~IFepF~-----------q~~~s~s~~~~GtGLGLsI~k~LVe~mgG~I~v~S~ 697 (993)
.|+|.|||+||+++++..-+.... +.+.......|-.|+|++-|-.+ .-++.|.|.
T Consensus 131 tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmV----AdkV~V~Sk 197 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLV----SNRVEVYTK 197 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGT----EEEEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeecc----CCEEEEEEc
Confidence 589999999999998887653321 11111122346689998765332 345666665
No 284
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=68.80 E-value=81 Score=31.19 Aligned_cols=151 Identities=15% Similarity=0.108 Sum_probs=86.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhHhHHHHHHHHHhcccCCCCCCCCCHHHHHHHHhhhhhcCCCcceeeeecccCch
Q 001941 112 TEKRREALGSMCDERARMLQDQFNVSMNHVQAMSILISTFHHGKNPSAIDQMTFTRYTERTAFERPLTSGVAYAVRVLRS 191 (993)
Q Consensus 112 ~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~id~~~f~~~t~~~~~~~p~i~~~~~~~~v~~~ 191 (993)
.+..++.+...++..+..|...++...+.++.++..... ++ +.+.+..+.+.....+ .+.++.++-
T Consensus 3 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~la~~~~~-----~~---~~~~~~~~l~~~~~~~-~~~~i~i~~----- 68 (240)
T 3c8c_A 3 RSMVSDSVDEIVDGVSKTTAEVINGRKSIAQYATSLIEN-----NP---EPDNVRTIISQPLIKN-TFLLVGFGL----- 68 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CC---CHHHHHHHHSSHHHHH-HSSCEEEEE-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----Cc---cHHHHHHHHHHHHhCC-CeeEEEEEE-----
Confidence 345566677788889999999999999999998877543 11 1122333333222211 222221110
Q ss_pred hHHHHHHHhcceeeecccCCCCCCCCCCCCCCCCccceeEeecCCccceeeeccccCcccHHHHHHHHhcCCccccccee
Q 001941 192 EREEFEKQQGWTIKRMDTFEHNPVHKDEPSPIEEEYAPVIFAQDTVSHVISLDMLSGKEDRENVLRARASGKGVLTAPFR 271 (993)
Q Consensus 192 er~~fE~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Y~pvi~~~~~~~~~~g~D~~s~~~~r~~i~~Ar~tg~~~~t~p~~ 271 (993)
. .+|. +++..+......++ ++..|+....|..+|+.+++.|+.
T Consensus 69 ----------------~-----~~G~------------~~~~~~~~~~~~~~----~~~~~~w~~~~~~~~~~~~s~~~~ 111 (240)
T 3c8c_A 69 ----------------E-----KDGS------------NINNDPSWNPGPTW----DPRVRPWYKDAKNAGKLVITAPYA 111 (240)
T ss_dssp ----------------T-----TTCC------------EEESCTTCCCCSSC----CGGGSHHHHHHHHHTSCEECCCEE
T ss_pred ----------------c-----CCce------------EEecCCCCCCCCCC----CcccChHHHHHHhcCCcEEeeceE
Confidence 0 0000 00000000000123 344677888888889999999987
Q ss_pred ecccCCceeEEEEEeeccCCCCCCChHHHHHhhcceeeeeeehHHHHHHHHHh
Q 001941 272 LLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLLHQ 324 (993)
Q Consensus 272 l~~~~~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~~~~v~~l~~~ll~~ 324 (993)
-..++.+.+.+..|++..+ .....|+++..++++.+.+. +..
T Consensus 112 ~~~~~~~~i~~~~pi~~~~----------~g~~~Gvl~~~i~~~~l~~~-~~~ 153 (240)
T 3c8c_A 112 DSASGEILVSVATPVKDSA----------TGQFLGSIFYDVSLAELAEL-VNE 153 (240)
T ss_dssp CTTTCCEEEEEEEEEECTT----------TCCEEEEEEEEECHHHHHHH-HTC
T ss_pred cCCCCeEEEEEEEEEEECC----------CCeEEEEEEEEEEHHHHHHH-HHh
Confidence 4445567788889998631 01246999999999887654 443
No 285
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=63.15 E-value=6.8 Score=50.38 Aligned_cols=49 Identities=22% Similarity=0.505 Sum_probs=29.9
Q ss_pred EEEEEEcCCCCChhhH--------hhccCCccccC---CCCcCcC-CCccchHHHHHHHHH
Q 001941 638 IVSVEDTGQGIPLEAQ--------SRIFTPFMQVG---PSISRTH-GGTGIGLSISKYLVG 686 (993)
Q Consensus 638 ~i~V~DtG~GI~~e~~--------~~IFepF~q~~---~s~s~~~-~GtGLGLsI~k~LVe 686 (993)
.|+|.|+|.|||-+.. +-||......+ ....+.. |=.|.|.+.|.-|-+
T Consensus 94 sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~ 154 (1177)
T 4gfh_A 94 TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST 154 (1177)
T ss_dssp EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEE
T ss_pred EEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCC
Confidence 3899999999997643 33454332221 1112222 337999999887754
No 286
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=56.13 E-value=5.4 Score=42.42 Aligned_cols=74 Identities=11% Similarity=0.106 Sum_probs=46.0
Q ss_pred CeEEEEeCC--hHHHHHHHHHHHhCCCEEEEEcCHHH--HHHHhCCCCCCcEEEEcCCCC-CCCHHHHHHHHhcc--CCc
Q 001941 887 RKILIVDDN--NVNLKVAAAGLKRYGAAVVCVERGKK--ATELLMPPHQFDACFMDIQMP-EMDGYEMLPCFESF--LLI 959 (993)
Q Consensus 887 ~~ILIVdDn--~~n~~vl~~~L~~~g~~v~~a~~g~e--Al~~~~~~~~~DlIlmDi~MP-~mdG~e~~~~Ir~~--~~~ 959 (993)
+++|||+++ +.-...+..+|++.||+|+......- -.+.+ ..||+||++-... ..+. +.++.|+++ .+-
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L---~~yDvIIl~d~~~~~l~~-~~~~~L~~yV~~GG 80 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELL---AKQDLVILSDYPAERMTA-QAIDQLVTMVKAGC 80 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHH---HTCSEEEEESCCGGGBCH-HHHHHHHHHHHTTC
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHH---hcCCEEEEcCCccccCCH-HHHHHHHHHHHhCC
Confidence 589999988 56778899999999999998765432 11233 2599998863222 2222 334444432 355
Q ss_pred eEEEE
Q 001941 960 AILVW 964 (993)
Q Consensus 960 ~~~~~ 964 (993)
.+|+.
T Consensus 81 gLi~~ 85 (259)
T 3rht_A 81 GLVML 85 (259)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 55555
No 287
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=54.23 E-value=22 Score=38.16 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=56.0
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCC-CCCcEEEEcCCCCCC-CHHHHHHHH----hccC
Q 001941 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPP-HQFDACFMDIQMPEM-DGYEMLPCF----ESFL 957 (993)
Q Consensus 884 l~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~-~~~DlIlmDi~MP~m-dG~e~~~~I----r~~~ 957 (993)
..+.++..||-++...+.++.-++..+-.-+...|+.+++..+.++ ..||+||+|---... +.-++++.| +.+.
T Consensus 111 S~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~ 190 (283)
T 2oo3_A 111 RSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFS 190 (283)
T ss_dssp CTTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCT
T ss_pred CCCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCC
Confidence 3457899999999999999888876443445667888998877432 369999999866533 444444444 3444
Q ss_pred CceEEEE
Q 001941 958 LIAILVW 964 (993)
Q Consensus 958 ~~~~~~~ 964 (993)
.--+++|
T Consensus 191 ~Gi~v~W 197 (283)
T 2oo3_A 191 TGLYCVW 197 (283)
T ss_dssp TSEEEEE
T ss_pred CeEEEEE
Confidence 5555666
No 288
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=39.00 E-value=59 Score=31.60 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=55.8
Q ss_pred CCeEEEE----eCChHHHHHHHHHHHhCCCEEEEE---cCHHHHHHHhCCCCCCcEEEEcCCCCCC--CHHHHHHHHhcc
Q 001941 886 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPEM--DGYEMLPCFESF 956 (993)
Q Consensus 886 ~~~ILIV----dDn~~n~~vl~~~L~~~g~~v~~a---~~g~eAl~~~~~~~~~DlIlmDi~MP~m--dG~e~~~~Ir~~ 956 (993)
+++|++. |-...-..++..+|+..||+|+.. ...++.++.+. ..++|+|.+-..|... .--++++.+|+.
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~-~~~~diV~lS~~~~~~~~~~~~~i~~L~~~ 96 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAV-QEDVDVIGVSILNGAHLHLMKRLMAKLREL 96 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHH-HTTCSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-hcCCCEEEEEeechhhHHHHHHHHHHHHhc
Confidence 4578887 666777889999999999999854 34556667664 4689999998876531 234567777775
Q ss_pred C--CceEEEE
Q 001941 957 L--LIAILVW 964 (993)
Q Consensus 957 ~--~~~~~~~ 964 (993)
. .++|++-
T Consensus 97 g~~~i~v~vG 106 (161)
T 2yxb_A 97 GADDIPVVLG 106 (161)
T ss_dssp TCTTSCEEEE
T ss_pred CCCCCEEEEe
Confidence 3 4777664
No 289
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=38.83 E-value=69 Score=32.50 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=52.8
Q ss_pred CCeEEEEe------CChHHHHHHHHHHHhCCCEEEEE----cCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHHh-
Q 001941 886 GRKILIVD------DNNVNLKVAAAGLKRYGAAVVCV----ERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCFE- 954 (993)
Q Consensus 886 ~~~ILIVd------Dn~~n~~vl~~~L~~~g~~v~~a----~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~Ir- 954 (993)
+++|++|+ |...+......+|++.|+++... .+.++..+.+. ..|.|++ |+-+-+.+++.+|
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~---~ad~I~l----~GG~~~~l~~~L~~ 99 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR---KNDFIYV----TGGNTFFLLQELKR 99 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH---HSSEEEE----CCSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH---hCCEEEE----CCCCHHHHHHHHHH
Confidence 57999997 44567778899999999999888 47777666663 3688885 8877776666555
Q ss_pred --------cc--CCceEEEE
Q 001941 955 --------SF--LLIAILVW 964 (993)
Q Consensus 955 --------~~--~~~~~~~~ 964 (993)
+. .+.|++..
T Consensus 100 ~gl~~~l~~~~~~G~p~~G~ 119 (206)
T 3l4e_A 100 TGADKLILEEIAAGKLYIGE 119 (206)
T ss_dssp HTHHHHHHHHHHTTCEEEEE
T ss_pred CChHHHHHHHHHcCCeEEEE
Confidence 33 36777666
No 290
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=34.94 E-value=52 Score=35.50 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=41.1
Q ss_pred cccHHHHHHHHhcCCcccccceeecccCCceeEEEEEeeccCCCCCCChHHHHHhhcceeeeeeehHHHHHHHH
Q 001941 249 KEDRENVLRARASGKGVLTAPFRLLKTNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESLVEKLL 322 (993)
Q Consensus 249 ~~~r~~i~~Ar~tg~~~~t~p~~l~~~~~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~~~~v~~l~~~ll 322 (993)
...|.-..+|++.+..+.+. +. ..++.+++.+..||+.. ..+.|.++..++++.+.+.+.
T Consensus 142 ~~~R~yf~~Al~g~~~~~~~-~~-~~tg~~~i~~a~PV~~~------------G~viGVv~v~i~l~~l~~~~~ 201 (305)
T 3e4o_A 142 YAFRDYFRLAVRDGMAEHFA-MG-TVSKRPGLYISRRVDGP------------GGPLGVIVAKLEFDGVEADWQ 201 (305)
T ss_dssp CTTSHHHHHHHHHSEEEEEE-EC-TTTCCEEEEEEEEEEET------------TEEEEEEEEEECCHHHHHHHH
T ss_pred ccccHHHHHHHhcCCcEEEE-Ee-cCCCCEEEEEEEEEccC------------CeEEEEEEEEEcHHHHHHHHh
Confidence 34577777787776654432 11 12467899999999852 134799999999998776654
No 291
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=33.50 E-value=1.5e+02 Score=29.42 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=51.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCCC-CHHHH---------HHHHhcc
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPEM-DGYEM---------LPCFESF 956 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~m-dG~e~---------~~~Ir~~ 956 (993)
++|+|||=..-|..-+..+|++.|+++.++.+.++. + .+|.||+ |+- +--+. ++.+++
T Consensus 3 ~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l-~------~~D~lil----PG~g~~~~~~~~~~~~~~i~~~~~- 70 (211)
T 4gud_A 3 QNVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV-L------AADKLFL----PGVGTASEAMKNLTERDLIELVKR- 70 (211)
T ss_dssp CCEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH-H------HCSEEEE----CCCSCHHHHHHHHHHTTCHHHHHH-
T ss_pred CEEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH-h------CCCEEEE----CCCCCHHHHHHHHHhcChHHHHHH-
Confidence 479999977777778889999999999998876542 2 2587776 663 22222 333433
Q ss_pred CCceEEEEcccccchhhhhccccCC
Q 001941 957 LLIAILVWKLNLKISWKRSYKLLNR 981 (993)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~~~~~~ 981 (993)
...||+.- |+=+-||..
T Consensus 71 ~~~PvlGI--------ClG~QlL~~ 87 (211)
T 4gud_A 71 VEKPLLGI--------CLGMQLLGK 87 (211)
T ss_dssp CCSCEEEE--------THHHHTTSS
T ss_pred cCCCEEEE--------chhHhHHHH
Confidence 46899877 777777643
No 292
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=32.45 E-value=85 Score=32.91 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=14.1
Q ss_pred CCCccchHHHHHHHHHH
Q 001941 671 HGGTGIGLSISKYLVGR 687 (993)
Q Consensus 671 ~~GtGLGLsI~k~LVe~ 687 (993)
.++.|||.+|++.+++.
T Consensus 16 Gas~GIG~aia~~la~~ 32 (255)
T 4g81_D 16 GSARGLGFAYAEGLAAA 32 (255)
T ss_dssp TCSSHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHC
Confidence 35789999999999853
No 293
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=29.94 E-value=1.4e+02 Score=30.25 Aligned_cols=87 Identities=15% Similarity=0.006 Sum_probs=54.5
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCC----EEEEE-cCHHHH--------------HH----H---hCCCCCCcEEEEcC
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGA----AVVCV-ERGKKA--------------TE----L---LMPPHQFDACFMDI 939 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~----~v~~a-~~g~eA--------------l~----~---~~~~~~~DlIlmDi 939 (993)
+.+|.-||-|+.....++..+++.|+ ++... .+..++ +. . ......||+||+|-
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg 130 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDG 130 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeC
Confidence 46899999999999999999999886 44332 332211 11 1 11125799999998
Q ss_pred CCCCCCHHHHHHHHhccCCceEEEEcccccchhhhhccc
Q 001941 940 QMPEMDGYEMLPCFESFLLIAILVWKLNLKISWKRSYKL 978 (993)
Q Consensus 940 ~MP~mdG~e~~~~Ir~~~~~~~~~~~~~~~~~~~~~~~~ 978 (993)
.-.. .-+-..++....-.+|+. .|+.|.-||.-
T Consensus 131 ~k~~---~~~~~~l~~l~~GG~Iv~---DNv~~r~~y~~ 163 (202)
T 3cvo_A 131 RFRV---GCALATAFSITRPVTLLF---DDYSQRRWQHQ 163 (202)
T ss_dssp SSHH---HHHHHHHHHCSSCEEEEE---TTGGGCSSGGG
T ss_pred CCch---hHHHHHHHhcCCCeEEEE---eCCcCCcchHH
Confidence 5432 222234566666666654 67666655543
No 294
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=29.78 E-value=70 Score=33.57 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=15.7
Q ss_pred CCccchHHHHHHHHHHcCCEEE
Q 001941 672 GGTGIGLSISKYLVGRMKGEIG 693 (993)
Q Consensus 672 ~GtGLGLsI~k~LVe~mgG~I~ 693 (993)
++.|||.+|++.+++. |.++-
T Consensus 15 as~GIG~aiA~~la~~-Ga~Vv 35 (254)
T 4fn4_A 15 AGSGIGRAIAKKFALN-DSIVV 35 (254)
T ss_dssp TTSHHHHHHHHHHHHT-TCEEE
T ss_pred CCCHHHHHHHHHHHHc-CCEEE
Confidence 5789999999999853 44443
No 295
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=29.52 E-value=87 Score=33.08 Aligned_cols=68 Identities=21% Similarity=-0.009 Sum_probs=46.7
Q ss_pred eCChHHHHHHHHHHHhCCCEEE--EEcCHHHHHHHhCCCCCCcEEEEcCCCCCC-----CHHHHHHHHhccCCceEEEE
Q 001941 893 DDNNVNLKVAAAGLKRYGAAVV--CVERGKKATELLMPPHQFDACFMDIQMPEM-----DGYEMLPCFESFLLIAILVW 964 (993)
Q Consensus 893 dDn~~n~~vl~~~L~~~g~~v~--~a~~g~eAl~~~~~~~~~DlIlmDi~MP~m-----dG~e~~~~Ir~~~~~~~~~~ 964 (993)
.|.....+ ....|.+.|+.|. |++|-..|-.+.. -.+++| |.+-.|.- .-+++++.|++...+|||+-
T Consensus 119 pD~~~tv~-aa~~L~~~Gf~Vlpy~~dd~~~akrl~~--~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~e 193 (265)
T 1wv2_A 119 PNVVETLK-AAEQLVKDGFDVMVYTSDDPIIARQLAE--IGCIAV-MPLAGLIGSGLGICNPYNLRIILEEAKVPVLVD 193 (265)
T ss_dssp BCHHHHHH-HHHHHHTTTCEEEEEECSCHHHHHHHHH--SCCSEE-EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEE
T ss_pred cCHHHHHH-HHHHHHHCCCEEEEEeCCCHHHHHHHHH--hCCCEE-EeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEe
Confidence 34444444 4566677899977 7777777766652 357777 77666532 22789999999999999873
No 296
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=27.64 E-value=83 Score=37.76 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=50.9
Q ss_pred cCCCeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEE--cCCCCCCCHH---H-HHHHHhc--
Q 001941 884 LLGRKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFM--DIQMPEMDGY---E-MLPCFES-- 955 (993)
Q Consensus 884 l~~~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlm--Di~MP~mdG~---e-~~~~Ir~-- 955 (993)
..|++|+|+|-...+...+...|.+.|+.+.+..+... . ....+|.||+ -..-|..++. + +.+.||.
T Consensus 444 ~~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~----~-~~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~ 518 (645)
T 3r75_A 444 LSGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA----V-DLARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLI 518 (645)
T ss_dssp STTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC----C-CGGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc----c-cccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHH
Confidence 45789999999998889999999999999988865543 1 1235898887 2223433441 1 2333443
Q ss_pred cCCceEEEE
Q 001941 956 FLLIAILVW 964 (993)
Q Consensus 956 ~~~~~~~~~ 964 (993)
-..+|++.-
T Consensus 519 ~~~iPiLGI 527 (645)
T 3r75_A 519 DEGKPFMAV 527 (645)
T ss_dssp HHTCCEEEE
T ss_pred HCCCCEEEE
Confidence 236899766
No 297
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=27.50 E-value=1.1e+02 Score=30.86 Aligned_cols=81 Identities=12% Similarity=0.085 Sum_probs=54.3
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCE---EEE-EcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHH-hccCCce
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAA---VVC-VERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCF-ESFLLIA 960 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~---v~~-a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~I-r~~~~~~ 960 (993)
+.+|.-||-++.....++..+++.|.. +.. ..+..+.+..+. ...||+|++|...+. -.++++.+ |.++.-.
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~-~~~fD~V~~d~~~~~--~~~~l~~~~~~LkpGG 157 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA-NDSYQLVFGQVSPMD--LKALVDAAWPLLRRGG 157 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC-TTCEEEEEECCCTTT--HHHHHHHHHHHEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc-CCCcCeEEEcCcHHH--HHHHHHHHHHHcCCCc
Confidence 458999999999999999999988865 543 334445444342 357999999975433 33455555 4555566
Q ss_pred EEEEcccccchh
Q 001941 961 ILVWKLNLKISW 972 (993)
Q Consensus 961 ~~~~~~~~~~~~ 972 (993)
+++. .|+-|
T Consensus 158 ~lv~---dn~~~ 166 (221)
T 3dr5_A 158 ALVL---ADALL 166 (221)
T ss_dssp EEEE---TTTTG
T ss_pred EEEE---eCCCC
Confidence 6665 55656
No 298
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=26.05 E-value=1.9e+02 Score=29.62 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=55.1
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCE--EE-EEcCHHHHHHHhCCCCCCcEEEEcCCCCCCCHHHHHHHH-hccCCceE
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMPPHQFDACFMDIQMPEMDGYEMLPCF-ESFLLIAI 961 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~--v~-~a~~g~eAl~~~~~~~~~DlIlmDi~MP~mdG~e~~~~I-r~~~~~~~ 961 (993)
+.+|..+|=++.....++..+++.|.. +. ...+..+.+..+.....||+|++|...+ +-..+++.+ |.++.-.+
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~~~~--~~~~~l~~~~~~LkpGG~ 165 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDADKP--NNPHYLRWALRYSRPGTL 165 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECSCGG--GHHHHHHHHHHTCCTTCE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECCchH--HHHHHHHHHHHhcCCCeE
Confidence 458999999999999999999887753 33 4556666565553234799999988533 333445554 45566666
Q ss_pred EEEcccccchhh
Q 001941 962 LVWKLNLKISWK 973 (993)
Q Consensus 962 ~~~~~~~~~~~~ 973 (993)
++. .++.|.
T Consensus 166 lv~---~~~~~~ 174 (248)
T 3tfw_A 166 IIG---DNVVRD 174 (248)
T ss_dssp EEE---ECCSGG
T ss_pred EEE---eCCCcC
Confidence 654 344454
No 299
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=25.11 E-value=3.6e+02 Score=28.32 Aligned_cols=62 Identities=21% Similarity=0.161 Sum_probs=42.3
Q ss_pred cCcccHHHHHHHHhc--CCcccccceeecc-------cCCceeEEEEEeeccCCCCCCChHHHHHhhcceeeeeeehHHH
Q 001941 247 SGKEDRENVLRARAS--GKGVLTAPFRLLK-------TNRLGVILTFAVYKRELPSNATPNERIEATDGYLGGIFDIESL 317 (993)
Q Consensus 247 s~~~~r~~i~~Ar~t--g~~~~t~p~~l~~-------~~~~G~~l~~pvy~~~~~~~~~~~~r~~~~~G~v~~~~~v~~l 317 (993)
.++..|.-...|... |+.. +.|+.+-. ...+++.+..||+.. ....|++..-++++.+
T Consensus 111 ~n~~~R~yf~~a~~~~~~~~~-~s~~~~~~~~g~~~~~~~p~i~~a~pV~~~------------g~~~GVlv~~i~l~~l 177 (295)
T 3lid_A 111 RDKSAREYFKYAQSLDNEQIS-AWGIELERDKGELVYPLSPSLRILMPISVN------------DVRQGYLVLNVDIEYL 177 (295)
T ss_dssp CBCTTSHHHHHHHHSCTTCCE-ECCCEECEETTEECSSCCEEEEEEEEEEET------------TEEEEEEEEEEEHHHH
T ss_pred ccchhhHHHHHHhcCCCCcEE-EeCceecccCCcccCCCCCEEEEEEEEccC------------CeEEEEEEEEecHHHH
Confidence 456667888888765 4444 44544321 346889999999742 2346999999999988
Q ss_pred HHHH
Q 001941 318 VEKL 321 (993)
Q Consensus 318 ~~~l 321 (993)
.+.+
T Consensus 178 ~~~~ 181 (295)
T 3lid_A 178 SSLL 181 (295)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 300
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=24.40 E-value=1.8e+02 Score=28.74 Aligned_cols=77 Identities=19% Similarity=0.137 Sum_probs=51.1
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHhCCCCCCcEEEEcCCCCC-CCHHH---------HHHHHhc-
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELLMPPHQFDACFMDIQMPE-MDGYE---------MLPCFES- 955 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~~~~~~~DlIlmDi~MP~-mdG~e---------~~~~Ir~- 955 (993)
++|+|+|....|...+...|++.|+++..+.+.. .+ ..+|.|++ |+ .+--+ +.+.||+
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~----~l---~~~d~lil----~G~g~~~~~~~~l~~~~~~~~i~~~ 71 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQDPK----AH---EEADLLVL----PGQGHFGQVMRAFQESGFVERVRRH 71 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESSTT----SC---SSCSEEEE----CCCSCHHHHHHTTSSSCTHHHHHHH
T ss_pred cEEEEEeCCCccHHHHHHHHHHCCCeEEEecChH----Hc---ccCCEEEE----CCCCcHHHHHHHHHhcCHHHHHHHH
Confidence 4799997543455667888999999999887642 12 35898887 44 33212 3556664
Q ss_pred -cCCceEEEEcccccchhhhhccccCCc
Q 001941 956 -FLLIAILVWKLNLKISWKRSYKLLNRK 982 (993)
Q Consensus 956 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 982 (993)
....||+.- |+-+-+|+..
T Consensus 72 ~~~~~PilGI--------C~G~Qll~~~ 91 (200)
T 1ka9_H 72 LERGLPFLGI--------CVGMQVLYEG 91 (200)
T ss_dssp HHTTCCEEEC--------THHHHTTSSE
T ss_pred HHcCCeEEEE--------cHHHHHHHHh
Confidence 357899777 7777777664
No 301
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=23.63 E-value=1.2e+02 Score=29.84 Aligned_cols=75 Identities=19% Similarity=0.122 Sum_probs=43.1
Q ss_pred eEEEEeCChHHHHHHHHHHHhCCCEEEEEcCH---HHHHHHhCCCCCCcEEEEcC-CCCCCCH--HHHHHHHhccCCceE
Q 001941 888 KILIVDDNNVNLKVAAAGLKRYGAAVVCVERG---KKATELLMPPHQFDACFMDI-QMPEMDG--YEMLPCFESFLLIAI 961 (993)
Q Consensus 888 ~ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g---~eAl~~~~~~~~~DlIlmDi-~MP~mdG--~e~~~~Ir~~~~~~~ 961 (993)
+|+|||.-.....-+...|++.|+++....+. ++..+.+.....+++||+-= .-|...| .++.+.+ ...+||
T Consensus 2 ~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~~~~~iil~gGpg~~~~~~~~~~l~~~~--~~~~Pi 79 (192)
T 1i1q_B 2 DILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRL--RGKLPI 79 (192)
T ss_dssp EEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTCSSEEEEECCCSSCGGGSTTHHHHHHHH--BTTBCE
T ss_pred cEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhccCCeEEECCCCcCchhCchHHHHHHHH--hcCCCE
Confidence 79999955555666788889999999988876 44434442212345555411 1111122 2233333 246899
Q ss_pred EEE
Q 001941 962 LVW 964 (993)
Q Consensus 962 ~~~ 964 (993)
+.-
T Consensus 80 lGI 82 (192)
T 1i1q_B 80 IGI 82 (192)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 302
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=22.74 E-value=2e+02 Score=28.74 Aligned_cols=78 Identities=18% Similarity=0.064 Sum_probs=54.0
Q ss_pred CCeEEEE----eCChHHHHHHHHHHHhCCCEEEEEcC---HHHHHHHhCCCCCCcEEEEcCCCCC-CC-HHHHHHHHhcc
Q 001941 886 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCVER---GKKATELLMPPHQFDACFMDIQMPE-MD-GYEMLPCFESF 956 (993)
Q Consensus 886 ~~~ILIV----dDn~~n~~vl~~~L~~~g~~v~~a~~---g~eAl~~~~~~~~~DlIlmDi~MP~-md-G~e~~~~Ir~~ 956 (993)
+++||+. |-...-..++..+|+..||+|..... .++-++.+. ..+||+|.+-..|+. ++ --++++.+|+.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~-~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~ 166 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVK-KYQPDIVGMSALLTTTMMNMKSTIDALIAA 166 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHH-HHCCSEEEEECCSGGGTHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHhc
Confidence 3478877 55567778899999999999985432 344455553 467999999887754 22 34567788875
Q ss_pred C---CceEEEE
Q 001941 957 L---LIAILVW 964 (993)
Q Consensus 957 ~---~~~~~~~ 964 (993)
. .+||++-
T Consensus 167 ~~~~~~~v~vG 177 (210)
T 1y80_A 167 GLRDRVKVIVG 177 (210)
T ss_dssp TCGGGCEEEEE
T ss_pred CCCCCCeEEEE
Confidence 3 3788765
No 303
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=22.51 E-value=2.7e+02 Score=28.99 Aligned_cols=78 Identities=13% Similarity=0.008 Sum_probs=53.6
Q ss_pred CCeEEEE----eCChHHHHHHHHHHHhCCCEEEEE---cCHHHHHHHhCCCCCCcEEEEcCCCCC-CC-HHHHHHHHhcc
Q 001941 886 GRKILIV----DDNNVNLKVAAAGLKRYGAAVVCV---ERGKKATELLMPPHQFDACFMDIQMPE-MD-GYEMLPCFESF 956 (993)
Q Consensus 886 ~~~ILIV----dDn~~n~~vl~~~L~~~g~~v~~a---~~g~eAl~~~~~~~~~DlIlmDi~MP~-md-G~e~~~~Ir~~ 956 (993)
+++||++ |-...-..++..+|+..||+|... -..++.++.+. ..+||+|.+-..|+. ++ --++++.+|+.
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~-~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~ 201 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQ-KEKPIMLTGTALMTTTMYAFKEVNDMLLEN 201 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHH-HHCCSEEEEECCCTTTTTHHHHHHHHHHTT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-HcCCCEEEEEeeccCCHHHHHHHHHHHHhc
Confidence 4578887 555677788999999999999643 23445556664 467999999887754 33 34577788764
Q ss_pred -CCceEEEE
Q 001941 957 -LLIAILVW 964 (993)
Q Consensus 957 -~~~~~~~~ 964 (993)
..+||++-
T Consensus 202 ~~~~~v~vG 210 (258)
T 2i2x_B 202 GIKIPFACG 210 (258)
T ss_dssp TCCCCEEEE
T ss_pred CCCCcEEEE
Confidence 34777655
No 304
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=22.27 E-value=1.7e+02 Score=25.55 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=30.8
Q ss_pred EEEEeCChHHHHHHHHHHHhCCCEEEEEcCHHHHHHHh
Q 001941 889 ILIVDDNNVNLKVAAAGLKRYGAAVVCVERGKKATELL 926 (993)
Q Consensus 889 ILIVdDn~~n~~vl~~~L~~~g~~v~~a~~g~eAl~~~ 926 (993)
+|+-|.+..-......-++..||+|.-+.+.++|+..+
T Consensus 80 lllqdqdeneleefkrkiesqgyevrkvtddeealkiv 117 (134)
T 2lci_A 80 LLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIV 117 (134)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHH
T ss_pred EEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHH
Confidence 44555566666778888889999999999999999877
No 305
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=22.02 E-value=2.1e+02 Score=28.33 Aligned_cols=79 Identities=15% Similarity=0.077 Sum_probs=54.6
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhCCCE--EE-EEcCHHHHHHHhCC---CCCCcEEEEcCCCCCCC-HHHHHHHHhccCC
Q 001941 886 GRKILIVDDNNVNLKVAAAGLKRYGAA--VV-CVERGKKATELLMP---PHQFDACFMDIQMPEMD-GYEMLPCFESFLL 958 (993)
Q Consensus 886 ~~~ILIVdDn~~n~~vl~~~L~~~g~~--v~-~a~~g~eAl~~~~~---~~~~DlIlmDi~MP~md-G~e~~~~Ir~~~~ 958 (993)
+.+|.-||=++.....++..++..|.. +. ...+..+.+..+.. ...||+|++|....... -.++++.+|.++.
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~~Lkp 162 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRK 162 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHTTCCCT
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhccccCC
Confidence 458999999999999999988877752 33 45566665555421 14799999997554332 2345666677888
Q ss_pred ceEEEE
Q 001941 959 IAILVW 964 (993)
Q Consensus 959 ~~~~~~ 964 (993)
-.+++.
T Consensus 163 gG~lv~ 168 (221)
T 3u81_A 163 GTVLLA 168 (221)
T ss_dssp TCEEEE
T ss_pred CeEEEE
Confidence 888776
No 306
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=21.02 E-value=2.4e+02 Score=28.07 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=46.6
Q ss_pred CeEEEEeCChHHHHHHHHHHHhCCCEEE-EEcCHHHHHHHhCC-CCCCcEEEE-----------------cCCCCCCCHH
Q 001941 887 RKILIVDDNNVNLKVAAAGLKRYGAAVV-CVERGKKATELLMP-PHQFDACFM-----------------DIQMPEMDGY 947 (993)
Q Consensus 887 ~~ILIVdDn~~n~~vl~~~L~~~g~~v~-~a~~g~eAl~~~~~-~~~~DlIlm-----------------Di~MP~mdG~ 947 (993)
++|+++--.+.+...+.....+.+.++. ...+.++|++.... ...+|+||. ++.+.+.|=+
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~~Dil 84 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKKSVSIPSISIKVTRFDTM 84 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHHHHH
T ss_pred CcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEECChHHHHHHHhCCCCEEEEcCCHhHHH
Confidence 3555555555555566665555544443 23344445554321 234555544 4444333333
Q ss_pred HHHHHHhccC-CceEEEEcccccchhhhhc-cccCCceEEe
Q 001941 948 EMLPCFESFL-LIAILVWKLNLKISWKRSY-KLLNRKIVII 986 (993)
Q Consensus 948 e~~~~Ir~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 986 (993)
.++++.|+.. .++++.+ ..-+.+++.. .+|+-+|.+.
T Consensus 85 ~al~~a~~~~~kIavvg~--~~~~~~~~~~~~ll~~~i~~~ 123 (196)
T 2q5c_A 85 RAVYNAKRFGNELALIAY--KHSIVDKHEIEAMLGVKIKEF 123 (196)
T ss_dssp HHHHHHGGGCSEEEEEEE--SSCSSCHHHHHHHHTCEEEEE
T ss_pred HHHHHHHhhCCcEEEEeC--cchhhHHHHHHHHhCCceEEE
Confidence 4444444432 2455555 4445555432 4555555543
No 307
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=20.77 E-value=1.7e+02 Score=30.00 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=16.4
Q ss_pred CCccchHHHHHHHHHHcCCEEEE
Q 001941 672 GGTGIGLSISKYLVGRMKGEIGF 694 (993)
Q Consensus 672 ~GtGLGLsI~k~LVe~mgG~I~v 694 (993)
++.|||.++++.+++. |-++.+
T Consensus 15 as~GIG~aia~~l~~~-G~~V~~ 36 (252)
T 3h7a_A 15 AGDYIGAEIAKKFAAE-GFTVFA 36 (252)
T ss_dssp CSSHHHHHHHHHHHHT-TCEEEE
T ss_pred CCchHHHHHHHHHHHC-CCEEEE
Confidence 4679999999999975 444443
No 308
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=20.57 E-value=2.1e+02 Score=28.84 Aligned_cols=20 Identities=20% Similarity=0.539 Sum_probs=15.3
Q ss_pred CCccchHHHHHHHHHHcCCEE
Q 001941 672 GGTGIGLSISKYLVGRMKGEI 692 (993)
Q Consensus 672 ~GtGLGLsI~k~LVe~mgG~I 692 (993)
++.|||.++++.+++. |-++
T Consensus 13 as~gIG~~~a~~l~~~-G~~v 32 (247)
T 3lyl_A 13 ASRGIGFEVAHALASK-GATV 32 (247)
T ss_dssp CSSHHHHHHHHHHHHT-TCEE
T ss_pred CCChHHHHHHHHHHHC-CCEE
Confidence 4579999999999875 4443
Done!