BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001943
(993 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1
Length = 1165
Score = 1138 bits (2944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/968 (56%), Positives = 721/968 (74%), Gaps = 23/968 (2%)
Query: 19 QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
+KLA PV ++ DK+QLLP FLKV+GLVKQHLDS+NYFV+ ++KIV+AN+++ S ++P
Sbjct: 38 KKLADPVPTIEDKWQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKVTSDVEPWF 97
Query: 79 FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
+L++ D+R+G P T D + ++PH CRL D+TY A I V+IEY +G K + +
Sbjct: 98 YLKYLDIRVGAPVRTDADAIQASISPHECRLRDLTYGANIYVDIEYTRG----KQVVRRR 153
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
+V IGR+P+MLRS +CVL GK+E E+A L ECPLDPGGYFI+KGTEKV+L+QEQLSKNR+
Sbjct: 154 NVPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQLSKNRI 213
Query: 198 IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
I++ + KKG ASVTSST KSKT + + GK+YL N IPI+VV+KAMG++SD
Sbjct: 214 IVEAEPKKGLWQASVTSSTHERKSKTYVITKNGKLYLKHNSVADDIPIVVVLKAMGLQSD 273
Query: 257 QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS----PPNDR 311
QE+ ++V G + Y L PSIEECA L+IYT ++ALEY+ +VK + PP++
Sbjct: 274 QEIFELVAGAEASYQDLFAPSIEECAKLNIYTAQQALEYIGARVKVNRRAGANRLPPHEE 333
Query: 312 EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
A +L V LA++ V N FRPK Y+ +M RR++ AM++ +DD+DYVGNKRLEL
Sbjct: 334 ---ALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRDYVGNKRLEL 390
Query: 372 SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD-LSQFIVR-DSITVGLERTLST 429
+GQL++LLFEDLFK S+++ +D +L KP R+ FD +Q V D IT G+ R LST
Sbjct: 391 AGQLLALLFEDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVHSDHITQGMVRALST 450
Query: 430 GNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCP 489
GN+ +KRFKM R G+T VL+RLS+I LG MTR++ QFEK+RKVSGPR+LQ SQ+GMLC
Sbjct: 451 GNWSLKRFKMERAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCT 510
Query: 490 CDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIF 549
DTPEGEACGLVKNLALMTH+TTDEEE P+I L Y G+ED+ ++SG ELH+ ++LV
Sbjct: 511 SDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIEDIHVISGRELHSHGTYLVYL 570
Query: 550 NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADK 609
NG ILG R P F RKLRR+GKI F+ +F+N QR V+I++DGGR+CRPL+I
Sbjct: 571 NGAILGISRYPSLFVASFRKLRRSGKISPFIGIFINTHQRAVFISTDGGRICRPLIIVQN 630
Query: 610 GISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEP 669
G+ +++ H++ L +G F+DFL++GL+EY+DVNEEN++LI++YE D TPDTTH+EIEP
Sbjct: 631 GLPKVESKHIRLLKEGKWGFEDFLKQGLVEYVDVNEENDSLISVYERDITPDTTHLEIEP 690
Query: 670 FTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729
FTILG +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYL+VYPQ+P++
Sbjct: 691 FTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVK 750
Query: 730 TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQK 789
T+TIEL+GYDKL AGQNATVA+MSYSGYDIEDA+V+NKSS+DRGFGRC V K++ I +K
Sbjct: 751 TKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVRK 810
Query: 790 YANSTSDRILRPDR---TGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGS-- 844
Y N T DRI P R TG + +++DDGLA G ++P +Y+NK++P +
Sbjct: 811 YPNGTHDRIGDPQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNALDNSI 870
Query: 845 IMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKF 904
+ T +S Y++ TYK P E +D+V L + + IK L+R TRRPELGDKF
Sbjct: 871 TLGHTQTVESGYKATPMTYKAP--EPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELGDKF 928
Query: 905 SSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 964
SSRHGQKGVCG IVQQED PF+++GICPD+IMNPHGFPSRMTVGKMIELL GK GV G
Sbjct: 929 SSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGVLRGT 988
Query: 965 FHYGSAFG 972
YG+ FG
Sbjct: 989 LEYGTCFG 996
>sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens
GN=POLR3B PE=1 SV=2
Length = 1133
Score = 1107 bits (2863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/960 (56%), Positives = 697/960 (72%), Gaps = 14/960 (1%)
Query: 19 QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
++LAAP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N I+KI++AN+++ S DP
Sbjct: 14 EQLAAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73
Query: 79 FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
+L++ ++ +G P + V+ ++PH CRL DMTY+API V+IEY +GS + +N
Sbjct: 74 YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
+ IGR+PIMLRS CVL GK AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130 ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189
Query: 198 IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
I++ D+KG + ASVTSST KS+T + +++G+ YL N + IPI+++ KAMG+ESDQ
Sbjct: 190 IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249
Query: 258 EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
E+VQM+G + A PS+EEC I+TQ +AL+Y+ KV+R G P + A
Sbjct: 250 EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309
Query: 316 FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
+L L +VPV NFR KC Y AVM+RR++ A + +DD+DY GNKRLEL+GQL
Sbjct: 310 RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368
Query: 376 VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
+SLLFEDLFK SE++K D ++ K R+++FD+ + + +D IT G+ +STGN+ +K
Sbjct: 369 LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427
Query: 436 RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
RFKM R+G+TQVL+RLS+I LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428 RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487
Query: 496 EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
EACGLVKNLALMTH+TTD E+GP++ L LGVED+ LL GEEL PN FLV NG ILG
Sbjct: 488 EACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547
Query: 556 KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
R K + R +RRAG I EFVS+ N RCVYI+SDGGR+CRP +I K +
Sbjct: 548 VIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607
Query: 616 EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
HM+EL G R+F+DFL E L+EYLDVNEEN+ IALYE DTTH+EIEPFT+LGV
Sbjct: 608 NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667
Query: 676 IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727
Query: 736 VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K ++Y N T
Sbjct: 728 IEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787
Query: 796 DRILRP---DRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 852
D+++ P T R +ILD DG+ +PGE ++ V +NK P T+ +
Sbjct: 788 DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847
Query: 853 DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 912
+Y+ TYKG +++V + S+ IK L+R TRRPE+GDKFSSRHGQKG
Sbjct: 848 QPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
Query: 913 VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 972
VCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV GRFHYG+AFG
Sbjct: 906 VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965
>sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus
GN=Polr3b PE=2 SV=2
Length = 1133
Score = 1104 bits (2856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/960 (56%), Positives = 695/960 (72%), Gaps = 14/960 (1%)
Query: 19 QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
++L AP+ +V +K++LLP FLKV+GLVKQH+DSFNYF+N I+KI++AN+++ S DP
Sbjct: 14 EQLTAPIPTVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMW 73
Query: 79 FLRFKDVRIGQPSMTVD-GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
+L++ ++ +G P + V+ ++PH CRL DMTY+API V+IEY +GS + +N
Sbjct: 74 YLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQR----IIRN 129
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
+ IGR+PIMLRS CVL GK AE A+L ECPLDPGGYFI+KG EKV+LIQEQLSKNR+
Sbjct: 130 ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRI 189
Query: 198 IIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQ 257
I++ D+KG + ASVTSST KS+T + +++G+ YL N + IPI+++ KAMG+ESDQ
Sbjct: 190 IVEADRKGAVGASVTSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQ 249
Query: 258 EVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTF--GSPPNDREGRA 315
E+VQM+G + A PS+EEC I+TQ +AL+Y+ KV+R G P + A
Sbjct: 250 EIVQMIGTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309
Query: 316 FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
+L L +VPV NFR KC Y AVM+RR++ A + +DD+DY GNKRLEL+GQL
Sbjct: 310 RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQL 368
Query: 376 VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK 435
+SLLFEDLFK SE++K D ++ K R+++FD+ + + +D IT G+ +STGN+ +K
Sbjct: 369 LSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLK 427
Query: 436 RFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEG 495
RFKM R+G+TQVL+RLS+I LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTPEG
Sbjct: 428 RFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEG 487
Query: 496 EACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG 555
EACGLVKNLALMTH+TTD E+GP+I L LGVED+ LL GEEL PN FLV NG ILG
Sbjct: 488 EACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEELSYPNVFLVFLNGNILG 547
Query: 556 KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
R K R +RRAG I EFVS+ N RCVYI+SDGGR+CRP +I K +
Sbjct: 548 VIRDHKKLVSTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVT 607
Query: 616 EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGV 675
HM+EL G R+F+DFL E L+EYLDVNEEN+ IALYE DTTH+EIEPFT+LGV
Sbjct: 608 NKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGV 667
Query: 676 IAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735
AGLIPYPHHNQSPRNTYQCAMGKQAMG I +NQ R+D+L+YLL YPQ+P++ T+TIEL
Sbjct: 668 CAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIEL 727
Query: 736 VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTS 795
+ ++KL AGQNATVAVMSYSGYDIEDA+V+NK+SLDRGFGRC+V K ++Y N T
Sbjct: 728 IDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTF 787
Query: 796 DRILRP---DRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQT 852
D+++ P T R +ILD DG+ +PGE ++ V +NK P T+ +
Sbjct: 788 DKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQ 847
Query: 853 DSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKG 912
+Y+ TYKG +++V + S+ IK L+R TRRPE+GDKFSSRHGQKG
Sbjct: 848 QPQYKDVPITYKG--ATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
Query: 913 VCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 972
VCG IV QED PF + GICPD+IMNPHGFPSRMTVGK+IELL GKAGV GRFHYG+AFG
Sbjct: 906 VCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFG 965
>sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1
SV=2
Length = 1149
Score = 1082 bits (2798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/961 (55%), Positives = 692/961 (72%), Gaps = 19/961 (1%)
Query: 19 QKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI 78
+KL + + DK+ LLP FLKV+GLVKQHLDSFNYFV+T ++KI++AN I+S +DP
Sbjct: 32 KKLTDEINTAQDKWHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEF 91
Query: 79 FLRFKDVRIGQPSMTVDGVSEKLNP-HMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKN 137
+L++ D+R+G+ S + + L P H CRL DMTY+API V+IEY +G + +
Sbjct: 92 YLKYVDIRVGKKSSS--STKDYLTPPHECRLRDMTYSAPIYVDIEYTRG----RNIIMHK 145
Query: 138 DVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRV 197
DV IGR+PIMLRS +C+LY DE+++A+L ECPLDPGGYFI+ GTEKV+L+QEQLSKNR+
Sbjct: 146 DVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRI 205
Query: 198 IIDTD-KKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256
I++ D KKG + ASVTSST KSKT + + GK+YL N ++IPI +V+KA G+ SD
Sbjct: 206 IVEADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIAEEIPIAIVLKACGILSD 265
Query: 257 QEVVQMV-GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
E++Q+V G D Y + ++EE + LDIYTQ++ALEY+ KVK +EG
Sbjct: 266 LEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQEG-- 323
Query: 316 FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
+ +A++ V +FR K Y+A+M RR+V AM N +DD+DYVGNKRLEL+GQL
Sbjct: 324 IEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQL 383
Query: 376 VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFD 433
+SLLFEDLFK ++ + ++D +L KP+R+ +D LS + ++IT GL R +STGN+
Sbjct: 384 ISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWS 443
Query: 434 VKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTP 493
+KRFKM R G+T VL+RLS+I LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC DTP
Sbjct: 444 LKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTP 503
Query: 494 EGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLI 553
EGEACGLVKNLALMTH+TTD+EE P+ LCY LGVED+ L+ LH ++ V NG +
Sbjct: 504 EGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDSASLHL--NYGVYLNGTL 561
Query: 554 LGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISR 613
+G R P F R LRR GK+ EF+S++ N Q V+IA+DGGR+CRPL+I G SR
Sbjct: 562 IGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSR 621
Query: 614 IKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673
+K+ H+++LLDG FDDFL+ GL+EYLDVNEEN++ IALYE D P TH+EIEPFTIL
Sbjct: 622 VKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMTHLEIEPFTIL 681
Query: 674 GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTI 733
G +AGLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQ R+D+LLYL+ YPQ+P++ T+TI
Sbjct: 682 GAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTI 741
Query: 734 ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANS 793
EL+ YDKL AGQNATVAVMSYSGYDIEDA+V+NKSS+DRGFGRC +K T + ++YAN
Sbjct: 742 ELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANH 801
Query: 794 TSDRI--LRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQ 851
T D I +R D G + Q L DGL G ++ +YINK P + +
Sbjct: 802 TQDIIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVN 861
Query: 852 TDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQK 911
++YR A Y+GP E +D+V + N IK L+R RRPELGDKFSSRHGQK
Sbjct: 862 VQTQYREAPVIYRGP--EPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQK 919
Query: 912 GVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 971
GVCG IV+QED PF+++GI PD+IMNPHGFPSRMTVGKMIEL+ GKAGV G YG+ F
Sbjct: 920 GVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKAGVLNGTLEYGTCF 979
Query: 972 G 972
G
Sbjct: 980 G 980
>sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila
melanogaster GN=RpIII128 PE=2 SV=2
Length = 1137
Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/981 (52%), Positives = 694/981 (70%), Gaps = 24/981 (2%)
Query: 1 MGLMQVEGSPKDEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGI 60
MG VE + D D + + P+K + +K++L+P FL+V+GLVKQH+DSFN+F+N I
Sbjct: 6 MGDHNVEATTWDPG--DSKDWSVPIKPLTEKWKLVPAFLQVKGLVKQHIDSFNHFINVDI 63
Query: 61 RKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDG--VSEKLNPHMCRLSDMTYAAPIL 118
+KIV+AN+ + SG DP +L++ DVR+G+P + DG +++ PH CRL D TY+API
Sbjct: 64 KKIVKANELVTSGADPLFYLKYLDVRVGKPDID-DGFNITKATTPHECRLRDTTYSAPIT 122
Query: 119 VNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
V+IEY +G+ +++N+++IGR+P+MLR C L GK E EL++L ECPLDPGGYF+
Sbjct: 123 VDIEYTRGTQR----IKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFV 178
Query: 179 IKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQF 238
++G EKV+LIQEQLS N+++ + D G + VTSST KS+T++ + GK YL N
Sbjct: 179 VRGQEKVILIQEQLSWNKMLTE-DFNGVVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSM 237
Query: 239 VKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGK 298
IPI+V+ KA+G+ SDQE+ ++G D + S+ + NL ++TQ++ALEY+ K
Sbjct: 238 TDDIPIVVIFKALGVVSDQEIQSLIGIDSKSQNRFGASLIDAYNLKVFTQQRALEYMGSK 297
Query: 299 --VKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKD 356
VKR + E A +L LA+VPV N N + K YV++M+RR++ A L+K
Sbjct: 298 LVVKRFQSATTKTPSE-EARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKT 356
Query: 357 AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR 416
DD+DY GNKRLEL+G L+S++FEDLFK M E++ D + K ++++FD+ + +
Sbjct: 357 LFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPK-VKAAQFDVVKHMRA 415
Query: 417 DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
IT GLE +S+GN+ +KRFKM R G+TQVL+RLS+I LG MTRV+ QFEK+RKVSGP
Sbjct: 416 AQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGP 475
Query: 477 RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
R+LQPSQWGMLCP DTPEGEACGLVKNLALMTH+TT+ EE P++ + + GVED+ +SG
Sbjct: 476 RSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSG 535
Query: 537 EELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASD 596
++NPN FLV NG +LG K +R +RR G++G +VSV + QRC+YI +D
Sbjct: 536 NPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSYVSVHTSYTQRCIYIHTD 595
Query: 597 GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEG 656
GGR+CRP VI + +K+HH+ EL G+R FDDFL +GLIEYLDVNEEN++ IA E
Sbjct: 596 GGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDVNEENDSFIAWNED 655
Query: 657 DATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSL 716
TTH+EIEPFT+LGV AGL+PYPHHNQSPRNTYQCAMGKQAMG I +NQ R+DSL
Sbjct: 656 QIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSL 715
Query: 717 LYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGR 776
+Y LVYP P++ ++TIEL +DKL AGQNATVAVMSYSGYDIEDA+++NK+S+DRG+GR
Sbjct: 716 MYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGR 775
Query: 777 CIVVKKYTAINQKYANSTSDRILRPDR---TGPGAERMQILDDDGLAAPGEIIKPNDVYI 833
C+V K ++YAN T DRI+ P + T + +LD DG+ APGE ++ + I
Sbjct: 776 CLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMI 835
Query: 834 NKESPLETRGSIMSP-TGQTDS-RYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFL 891
NKE P T M+P GQ+ Y + +YKGP E ++RV + ++ D IK L
Sbjct: 836 NKEMPAVTS---MNPLQGQSAQVPYTAVPISYKGP--EPSYIERVMVSANAEEDFLIKIL 890
Query: 892 IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 951
+R TR PE+GDKFSSRHGQKGV G IV+QED PF++ GICPD+IMNPHGFPSRMTVGK +
Sbjct: 891 LRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTL 950
Query: 952 ELLGGKAGVSCGRFHYGSAFG 972
ELLGGKAG+ G+FHYG+AFG
Sbjct: 951 ELLGGKAGLLEGKFHYGTAFG 971
>sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB
PE=3 SV=1
Length = 1122
Score = 615 bits (1586), Expect = e-175, Method: Compositional matrix adjust.
Identities = 361/967 (37%), Positives = 560/967 (57%), Gaps = 51/967 (5%)
Query: 30 DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQ 89
D + ++ + K +GLV+QHLDS+N F++ G+++++ + I P ++F VR+G+
Sbjct: 15 DLWLVMEAYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFGGVKPDI-PDFEVKFGKVRLGE 73
Query: 90 PSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEKTTMEKNDVVIGRIPIM 147
P G + L P R+ ++TY+API + I V G + E +V IG +PIM
Sbjct: 74 PEFQEAQGQRKPLYPMDARIRNLTYSAPIYLELIPVVNG-----VSQEAVEVRIGELPIM 128
Query: 148 LRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN- 206
L+S C LYG + EL +LGE P DPGGYFI+ G+E+V++ E L+ N+ +++ D++ N
Sbjct: 129 LKSKACRLYGLSDEELIKLGEDPKDPGGYFIVNGSERVIVSIEDLAPNKTLVERDERQNR 188
Query: 207 INASVTSSTETVKSKTVIQMEK-GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGR 265
I A S ++ ++ K G +Y+ L + + + VM+A+G+ SD+E+V+ V
Sbjct: 189 IIAKCFSYRHGYRALITVERRKDGILYVKLPNVPRPVKFVYVMRALGLLSDREIVEAVSD 248
Query: 266 DPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLA 325
DPR +L ++E+ + D+ TQE+AL+Y+ GK+ S G P R RA +I+ + L
Sbjct: 249 DPRIQHVLFDNLEDAS--DVTTQEEALDYI-GKL--SLPGQPKEYRLRRAQNIIDNNLLP 303
Query: 326 NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFK 385
++ V + + K +Y+ +M R++E L DDKD+ NKRL+L+G L+ LF F
Sbjct: 304 HMGVEEKDRKAKAYYLGMMALRVLELSLGLRGEDDKDHYANKRLKLAGDLLMDLFRVAFG 363
Query: 386 TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSI-----TVGLERTLSTGNFDVKRFKMH 440
++ ++Q + + F+ Q VR+SI + +E L+TG++
Sbjct: 364 QLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIEHALATGSW-----PGG 418
Query: 441 RKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGL 500
R G++Q+L R ++I TL H+ RV+ + + R L + WG +CP +TPEG CGL
Sbjct: 419 RTGVSQLLDRTNYISTLSHLRRVTSPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGL 478
Query: 501 VKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRP 560
VKNLALM+ +TT E + LGV +E E NP+ + + NG+++G
Sbjct: 479 VKNLALMSQITTGVPEEEVREYLERLGVVPIE----ERRPNPDLWRLYLNGVLVGTVEDG 534
Query: 561 KCFADVMRKLRRAGKIGEFVSV--FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHH 618
+ F + +R RR+GKI + ++V + +E + +Y+ SD GRV RPL+I + G ++ H
Sbjct: 535 EGFVNRIRTDRRSGKISDIINVALYQDEDVKEIYVNSDDGRVRRPLIIVENGRPKLTREH 594
Query: 619 MKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAG 678
++ + +G ++ D ++ G+IEYLD EE NAL+A + + T + TH+E+ P ILG+ A
Sbjct: 595 VEAIKNGSLTWSDLVKMGVIEYLDAEEEENALVATWPWEVTEEHTHLELMPAAILGIPAS 654
Query: 679 LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
L+PYP HN PRNTY M KQ++G N R+D+ +L+ YPQ PL+ +R ++ VG+
Sbjct: 655 LVPYPEHNARPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGF 714
Query: 739 DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRI 798
++ AGQN VAV+SY+GY++EDAI+MNK+S++RG R + Y A ++Y +DR
Sbjct: 715 EERPAGQNFVVAVLSYAGYNMEDAIIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRF 774
Query: 799 LRPDRTGPG--AER-MQILDDDGLAAPGEIIKPNDVYINKESP---LETR----GSIMSP 848
PD T G ER + LD+DG+ P + DV + + SP LE + G I+
Sbjct: 775 EIPDPTIQGYLGERYYRHLDEDGIIFPESKVNGKDVLVGRTSPPRFLEEQSGLGGIILQE 834
Query: 849 TGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRH 908
+T R + ET VVD+V + +G +K R R PE GDKF+SRH
Sbjct: 835 RRETSLTVRPS---------ETGVVDKVIITETGDGTKLVKVTTRDLRIPEFGDKFASRH 885
Query: 909 GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYG 968
GQKGV G IV QED P++E GI PDLI+NPHG PSRMTVG++IE +GGK GR G
Sbjct: 886 GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDG 945
Query: 969 SAF-GEP 974
+AF GEP
Sbjct: 946 TAFIGEP 952
>sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium
discoideum GN=polr3b PE=3 SV=1
Length = 1608
Score = 605 bits (1559), Expect = e-172, Method: Compositional matrix adjust.
Identities = 290/487 (59%), Positives = 366/487 (75%), Gaps = 7/487 (1%)
Query: 498 CGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKH 557
CGLVKN ALM+HVTTD+ EGPL+ L Y LGV+D+ L++GEEL++ N++LV+ NG I+G H
Sbjct: 970 CGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQIIGIH 1029
Query: 558 RRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEH 617
P F +RK+RRAG+I EFVS+ N+ Q+ + +A DGGR+CRP++I D R+ +
Sbjct: 1030 NSPDYFVTTLRKMRRAGRIREFVSICKNKAQQTISVACDGGRLCRPVIIVDDQRPRLTQE 1089
Query: 618 HMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIA 677
H+++L DG+R+FDDF+REG+IEYLDVNEEN++ +A E P TTH+EIEPFT+LG +A
Sbjct: 1090 HIEDLKDGLRTFDDFIREGIIEYLDVNEENDSFLAWREAAIQPWTTHLEIEPFTMLGCVA 1149
Query: 678 GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
GLIPYPHHNQSPRNTYQCAMGKQA+G IA+NQL R+D+LLYLLV+ QRPL TRTI+L+
Sbjct: 1150 GLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLVHTQRPLCQTRTIDLLN 1209
Query: 738 YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
+ KL AG NATVAVMSYSGYDIEDA+VMNK+SLDRGFGRCIV+KK +K+ N TSDR
Sbjct: 1210 WYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLKKQVTSIKKHGNDTSDR 1269
Query: 798 ILRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYR 857
I P + +LD DG+A PGE+ + + +NK SPL T + +P DS Y+
Sbjct: 1270 IFPPTPNDLRQPKYGLLDSDGIAKPGELAQKGQILVNKYSPLNTIDATPNPELIPDSAYK 1329
Query: 858 SARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTI 917
S+ YK + +D+V L S + L IK L+R TRRPELGDKFSSRHGQKGVCG I
Sbjct: 1330 SSYMGYKYDN--PAFIDKVLLTSGDDEQLLIKMLMRSTRRPELGDKFSSRHGQKGVCGII 1387
Query: 918 VQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGH 977
V+QED PFS+ GICPD+IMNPHGFPSRMT+GKMIELL GKAGV G+F +G+ FG
Sbjct: 1388 VKQEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELLAGKAGVLSGKFGFGTCFG----- 1442
Query: 978 ADTVESI 984
D VE+I
Sbjct: 1443 GDRVENI 1449
Score = 507 bits (1306), Expect = e-142, Method: Compositional matrix adjust.
Identities = 250/490 (51%), Positives = 345/490 (70%), Gaps = 8/490 (1%)
Query: 13 EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVS 72
++L + KL +K V +K++L+P F+K RGLVKQH+DSFN+F+N ++KIV+AN+R+ +
Sbjct: 21 DELYNISKLTDDIKPVEEKWKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANERLTA 80
Query: 73 GIDPSIFLRFKDVRIGQPSMTVDGV-SEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEK 131
DPS F+RF D+ +G P+ T D + S +L P CRL DMTY+API VNIEY + K
Sbjct: 81 ENDPSYFVRFTDINVGSPTSTEDNLDSVQLTPQRCRLRDMTYSAPIFVNIEYTRN----K 136
Query: 132 TTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQ 191
+ K DV IG IPIMLRS CVL K ++A LGECP+DPGGYFI++G EKV+L EQ
Sbjct: 137 QIISKRDVHIGNIPIMLRSSNCVLSKKTPEQMAALGECPMDPGGYFIVRGQEKVILNHEQ 196
Query: 192 LSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAM 251
LSKNR+II+ D KG +ASVTSST KS+T + ++ K+YL N F + IP+ +V+K M
Sbjct: 197 LSKNRIIIEMDSKGLPSASVTSSTHERKSRTGVTLKNEKLYLKHNTFGEDIPVAIVLKGM 256
Query: 252 GMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVK--RSTFG-SPP 308
G+E+DQE+ Q+VG D + + PS+EEC ++T +AL+YL ++K R +G
Sbjct: 257 GVETDQEMAQLVGSDDVFLNAITPSLEECQKCGVHTAAQALDYLGSRIKVFRRPYGVQNK 316
Query: 309 NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
+ A IL V L +VPV NFR K Y+++M+RR++ A +K +DDKDY GNKR
Sbjct: 317 KTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKR 376
Query: 369 LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLS 428
+ELSGQL+SLLFED FK SE++K+VD ++K +R+ DL + I D+IT G +S
Sbjct: 377 IELSGQLISLLFEDCFKKFQSELKKSVDQAIAKANRAENLDLPKLIRTDTITNGFTHAIS 436
Query: 429 TGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLC 488
+G +++KRF+M R G++QVL+RLS+I +G MTR+ QFEK+RKV+GPR+LQPSQWGMLC
Sbjct: 437 SGQWNLKRFRMERSGVSQVLSRLSYISCMGMMTRIQSQFEKTRKVAGPRSLQPSQWGMLC 496
Query: 489 PCDTPEGEAC 498
P DTPEGEAC
Sbjct: 497 PSDTPEGEAC 506
>sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoB PE=3 SV=2
Length = 1126
Score = 587 bits (1512), Expect = e-166, Method: Compositional matrix adjust.
Identities = 338/956 (35%), Positives = 540/956 (56%), Gaps = 48/956 (5%)
Query: 31 KFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQP 90
++ + F K RGLV+QHLDSFN F+ +++++ IV+ + P + ++ +R +P
Sbjct: 7 RWAIAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEIVTEV-PGLKIKLGKIRYEKP 65
Query: 91 SM--TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIML 148
S+ T G ++ P RL ++TY++PI +++ V+ + E ++ IG +PIML
Sbjct: 66 SIRETDKGPMREITPMEARLRNLTYSSPIFLSMIPVENN----IEGEPIEIYIGDLPIML 121
Query: 149 RSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKG-NI 207
+S +L +GE P DPGGYFI+ G+EKV++ QE L+ NRV++D K G NI
Sbjct: 122 KSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKVIIAQEDLATNRVLVDYGKSGSNI 181
Query: 208 N--ASVTSSTETVKSKTVIQ-MEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264
A VTSS + + +I+ ++ + + +IP ++M+A+G +D+++V V
Sbjct: 182 THVAKVTSSAAGYRVQVMIERLKDSTIQISFATVPGRIPFAIIMRALGFVTDRDIVYAVS 241
Query: 265 RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFL 324
DP+ LLPS+E+ ++ I + E+AL+++ +V G +R +A ++ FL
Sbjct: 242 LDPQIQNELLPSLEQASS--ITSAEEALDFIGNRV---AIGQKRENRIQKAEQVIDKYFL 296
Query: 325 ANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLF 384
++ + + K +Y+A + +++E L + DDKD+ NKR+ L+G L + LF F
Sbjct: 297 PHLGTSPEDRKKKGYYLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAF 356
Query: 385 KTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGM 444
K + ++ ++ R R L+ + D IT + L+TGN+ R G+
Sbjct: 357 KAFVKDLVYQLE---KSKVRGRRLSLTALVRADIITERIRHALATGNW-----VGGRTGV 408
Query: 445 TQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNL 504
+Q+L R +++ L H+ RV + + R L +QWG +CP +TPEG GLVKNL
Sbjct: 409 SQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNL 468
Query: 505 ALMTHVTTDEEEGPLISLCYCLGV---EDLELLSGEELHNPNSFL----VIFNGLILGKH 557
AL+ V+ E + + Y LGV ED+ E+ + ++ V NG +LG +
Sbjct: 469 ALLAQVSVGINESVVERVAYELGVVSVEDVIRRISEQNEDVEKYMSWSKVYLNGRLLGYY 528
Query: 558 RRPKCFADVMRKLRRAGKIGEFVSV------FVNEKQRCVYIASDGGRVCRPLVIADKGI 611
K A +R+ RR GK+ + V+V ++NE V+I D GRV RPL+I + G
Sbjct: 529 EDGKELAKKIRESRRQGKLSDEVNVAYIATDYLNE----VHINCDAGRVRRPLIIVNNGT 584
Query: 612 SRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFT 671
+ +K+L +G +FDD +++G IE++D EE NA +AL D TPD TH+EI P
Sbjct: 585 PLVDTEDIKKLKNGEITFDDLVKQGKIEFIDAEEEENAYVALNPQDLTPDHTHLEIWPSA 644
Query: 672 ILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTR 731
ILG+IA +IPYP HNQSPRNTYQ AM KQ++G A N R D+ +LL YPQ PL+ TR
Sbjct: 645 ILGIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTR 704
Query: 732 TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYA 791
+ ++GY+ AG NA +A+MSY+GY++ED+I+MNKSS++RG R + Y+ KY
Sbjct: 705 MLGVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTEEVKYP 764
Query: 792 NSTSDRILRPD---RTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSP 848
D+I+ P+ + G + ++L+D+G+ +P +K DV I K SP
Sbjct: 765 GGQEDKIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKEL 824
Query: 849 TGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRH 908
+ + R S + GE +VD V + G+ +K +R R PE+GDKF++RH
Sbjct: 825 SPEQAKRDTSIVTRH----GENGIVDLVLITETLEGNKLVKVRVRDLRIPEIGDKFATRH 880
Query: 909 GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 964
GQKGV G ++ Q D P++ +GI PD+I+NPH PSRMT+G+++E +GGK G+
Sbjct: 881 GQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEAIGGKYAALSGK 936
>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans
GN=rpb-2 PE=2 SV=2
Length = 1193
Score = 587 bits (1512), Expect = e-166, Method: Compositional matrix adjust.
Identities = 346/993 (34%), Positives = 552/993 (55%), Gaps = 67/993 (6%)
Query: 32 FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVR---------ANDRIVSGID-PSIF-L 80
+ ++ + +GLV+Q LDSF+ FV +++IV N + + ++ P+ F L
Sbjct: 34 WVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGTDMENPAKFSL 93
Query: 81 RFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDV 139
+F + + +P+ DG + P+ RL ++TYA+P+ V+I V T + V
Sbjct: 94 KFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKV 153
Query: 140 VIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII 199
+G++P+MLRS C+L + +L L ECPLDPGGYF+I G+EKVL+ QE+++ N V +
Sbjct: 154 FVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYV 213
Query: 200 DTDKKGNI------NASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKI 242
+ K G + + +S+ + V + +G ++ +L ++I
Sbjct: 214 FSMKDGKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEI 273
Query: 243 PIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKV 299
PIM+V +A+G SD++++ + DP ++ PS++E I Q AL ++ +
Sbjct: 274 PIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEA--FVIQEQNVALNFIGAR- 330
Query: 300 KRSTFGSPPN-DREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNK 355
G+ P RE R A IL+ L +V V + K F++ M+ R++ A L +
Sbjct: 331 -----GAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGR 385
Query: 356 DAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIV 415
+DD+D++GNKRL+L+G L++ LF LF+ ++ E++ T ++K + F L +
Sbjct: 386 RELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINK---NDDFALDVCVK 442
Query: 416 RDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVS 474
+IT GL +L+TGN+ D K+ R G++QVL RL++ TL H+ R + + K++
Sbjct: 443 TSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLA 502
Query: 475 GPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELL 534
PR L +QWGM+CP +TPEG+A GLVKNLALM +++ P++ +E+LE +
Sbjct: 503 KPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEV 562
Query: 535 SGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYI 593
S + + V NG +G HR P ++KLRR I VS+ + + R + I
Sbjct: 563 SPSAIADATKIFV--NGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRI 620
Query: 594 ASDGGRVCRPLVIADKGISRIKEHHMKELLDGV-----RSFDDFLREGLIEYLDVNEENN 648
+D GRVCRPL+I + +K+ H+ +L + ++ D + G++E +D EE
Sbjct: 621 YTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEET 680
Query: 649 ALIA-----LYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
++IA L G TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 681 SMIAMMPEDLRSGGYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 740
Query: 704 NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
N RMD+L ++L YPQ+PL+TTR++E + +++L AG NA VA++SYSGY+ ED++
Sbjct: 741 VYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQEDSV 800
Query: 764 VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQI---LDDDGLA 820
+MN S++DRG R + + Y N+ + I +P R R + LD+DG+
Sbjct: 801 IMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGII 860
Query: 821 APGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCS 880
+PG + +DV I K L + +G+ + R A + ET +VD+V L
Sbjct: 861 SPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPK-RDASTFLRS--SETGIVDQVMLSL 917
Query: 881 DKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHG 940
+ +G+ +K +R R P++GDKF+SRHGQKG G + +QED PF+ G+ PD+I+NPH
Sbjct: 918 NSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHA 977
Query: 941 FPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 973
PSRMT+G +IE L GK + G + F +
Sbjct: 978 VPSRMTIGHLIECLQGKLSANKGEIGDATPFND 1010
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b
PE=2 SV=2
Length = 1174
Score = 586 bits (1510), Expect = e-166, Method: Compositional matrix adjust.
Identities = 358/1020 (35%), Positives = 556/1020 (54%), Gaps = 88/1020 (8%)
Query: 12 DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
DE PD + A + ++ + +GLV+Q LDSF+ F+ +++IV
Sbjct: 15 DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66
Query: 65 -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
+A + SG P L+F+ + + +P+ DG + P+ RL ++TY+AP+ V
Sbjct: 67 LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 126
Query: 120 NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
+I + V E+ + IG+IPIMLRS C+L G + +L L ECPLDPGGYFI
Sbjct: 127 DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 186
Query: 179 IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
I G+EKVL+ QE+++ N V + K G + + +S+ + V + +G
Sbjct: 187 INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 246
Query: 230 --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
++ L +++PI++V +A+G SD+++++ + DP ++ PS++
Sbjct: 247 AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 306
Query: 279 ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
E I Q AL ++ + + G R A +L+ L +V V + K
Sbjct: 307 EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 362
Query: 339 FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
+++ M+ R++ A L + +DD+D+ GNKRL+L+G L++ LF +FK ++ EV QK
Sbjct: 363 YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 422
Query: 395 VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
+D R F+L I I+ GL+ +L+TGN+ D K+ R G++QVL RL+F
Sbjct: 423 ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 475
Query: 454 IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
TL H+ R++ + K++ PR L + WGM+CP +TPEG A GLVKNLALM +++
Sbjct: 476 ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 535
Query: 514 EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
+ P++ +E+LE +S + + V NG +G H+ P+ + +RKLRR
Sbjct: 536 SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 593
Query: 574 GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
I VS+ + ++R + I +D GR+CRPL+I +K +K+ H+ +L + S+
Sbjct: 594 MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 653
Query: 630 DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
D + G++EY+D EE ++A+ TPD TH EI P ILGV A
Sbjct: 654 QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 708
Query: 678 GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
+IP+P HNQSPRNTYQ AMGKQAMG N RMD+L ++L YPQ+PL+TTR++E +
Sbjct: 709 SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 768
Query: 738 YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
+ +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R + + Y K +
Sbjct: 769 FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 828
Query: 798 ILRPDRTGPGAERMQI---LDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTD 853
+P R R I LDDDGL APG + +DV I K L E + S T+
Sbjct: 829 FEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELES----TN 884
Query: 854 SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGV 913
RY + ET +VD+V + ++ G K +R R P++GDKF+SRHGQKG
Sbjct: 885 RRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 944
Query: 914 CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 973
CG +QED PF+ GI PD+I+NPH PSRMT+G +IE L GK + G + F +
Sbjct: 945 CGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFND 1004
>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium
discoideum GN=polr2b PE=3 SV=1
Length = 1170
Score = 586 bits (1510), Expect = e-166, Method: Compositional matrix adjust.
Identities = 348/991 (35%), Positives = 551/991 (55%), Gaps = 79/991 (7%)
Query: 30 DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV--------------RANDRIVSGID 75
D + ++ + + +GLV+Q LDSF+ F+ +++I+ +VS
Sbjct: 22 DVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPESQHHPGQAVVSNNV 81
Query: 76 PSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIE--YVQGSHTEKTT 133
+ ++F + + +P+ +DGVS+++ P+ R+ ++TY+AP+ V+I + GS ++
Sbjct: 82 STFSVKFGQIYLSKPTAEIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVMTGSKSKGDE 141
Query: 134 MEKNDVV----IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQ 189
++V+ IG++PIMLRS C+L D+ +L +GEC D GGYFII G+EKVL+ Q
Sbjct: 142 RRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIINGSEKVLIAQ 201
Query: 190 EQLSKNRVII---DTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK----- 241
E+++ N V + K + A + S ET T MYL + K
Sbjct: 202 EKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPT------STMYLKMLHNTNKGPVGI 255
Query: 242 ----------IPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQ 288
+P+++V +A+G +D+++++ + +D + L+ PS+EE + I +Q
Sbjct: 256 KATVPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLMRPSLEE--SFVIQSQ 313
Query: 289 EKALEYLEGKVKRSTFGSPPNDREGR---AFSILRDVFLANVPVHNNNFRPKCFYVAVML 345
E AL+YL GK + ST G+ RE R A +L+ L +V V K FY +
Sbjct: 314 EVALDYL-GK-RGSTMGT----REQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYIT 367
Query: 346 RRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRS 405
R++ A L + +DD+D+ NKRL+L+G L+ LF LFK + +V+ + + K
Sbjct: 368 HRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDK---D 424
Query: 406 SRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSP 465
F S + +IT GL+ +L+TGN+ + + G+ QVL RL+F TL H+ R++
Sbjct: 425 KEFIASSAVKSKTITSGLKYSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLSHLRRLNT 484
Query: 466 QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC 525
+ K++ PR L + WG++CP +TPEG+ACGLVKNLA+M++++ P++
Sbjct: 485 PIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEE 544
Query: 526 LGVEDLELLSGEELHNPNSFLVIF-NGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV 584
E+LE +S +L + S IF NG+ +G H +P +R LRR G + VSV
Sbjct: 545 WTTENLEEIS--DLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSVVR 602
Query: 585 NEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVR-SFDDFLREGLIEYLDV 643
+ +++ + + +D GR CRPL + +IK+ H+ +L++ + D L EG++EY+D
Sbjct: 603 DIREKELRLYTDPGRCCRPLFVVQDNKVQIKKQHINKLINNDEYKWQDLLSEGIVEYIDA 662
Query: 644 NEENNALIALYEGDATP--------DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQC 695
EE LIA+ D P TH EI P ILG+ +IP+P HNQSPRNTYQ
Sbjct: 663 EEEETVLIAMTPEDLVPMPNEQIVHTYTHCEIHPSMILGICCSIIPFPDHNQSPRNTYQA 722
Query: 696 AMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYS 755
AMGKQAMG N RMD++ ++L YPQ+PL+TTR++E + + +L AGQN VA+ YS
Sbjct: 723 AMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYLHFRELPAGQNVCVAIACYS 782
Query: 756 GYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER---MQ 812
GY+ ED++++N+S++DRG R + + Y +K + + +P+R R +
Sbjct: 783 GYNQEDSVILNQSAIDRGLFRSMFYRAYKDEQKKQTSLMEEVFEKPERDTCAGMRHGSYE 842
Query: 813 ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCV 872
+DDDGL APG + +D+ I K +PL + P + ++ S+ ET +
Sbjct: 843 KIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGPKTRRHTKRDSSTALRS---SETGI 899
Query: 873 VDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICP 932
VD+V L + G K +R R P++GDKFSSRHGQKG CG +QED PF+ GI P
Sbjct: 900 VDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCGMAYRQEDLPFTVEGIVP 959
Query: 933 DLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 963
D+I+NPH PSRMT+G++IE L GK S G
Sbjct: 960 DIIVNPHAIPSRMTIGQLIECLLGKVSASTG 990
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B
PE=1 SV=1
Length = 1174
Score = 586 bits (1510), Expect = e-166, Method: Compositional matrix adjust.
Identities = 358/1020 (35%), Positives = 556/1020 (54%), Gaps = 88/1020 (8%)
Query: 12 DEQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIV------- 64
DE PD + A + ++ + +GLV+Q LDSF+ F+ +++IV
Sbjct: 15 DEITPDLWQEACWI--------VISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPID 66
Query: 65 -RANDRIVSGI---DPSIFLRFKDVRIGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILV 119
+A + SG P L+F+ + + +P+ DG + P+ RL ++TY+AP+ V
Sbjct: 67 LQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYV 126
Query: 120 NI-EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFI 178
+I + V E+ + IG+IPIMLRS C+L G + +L L ECPLDPGGYFI
Sbjct: 127 DITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFI 186
Query: 179 IKGTEKVLLIQEQLSKNRVIIDTDK------KGNINASVTSSTETVKSKTVIQMEKG--- 229
I G+EKVL+ QE+++ N V + K G + + +S+ + V + +G
Sbjct: 187 INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 246
Query: 230 --------KMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE 278
++ L +++PI++V +A+G SD+++++ + DP ++ PS++
Sbjct: 247 AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 306
Query: 279 ECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338
E I Q AL ++ + + G R A +L+ L +V V + K
Sbjct: 307 EA--FVIQEQNVALNFIGSRGAKP--GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKA 362
Query: 339 FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKT 394
+++ M+ R++ A L + +DD+D+ GNKRL+L+G L++ LF +FK ++ EV QK
Sbjct: 363 YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKF 422
Query: 395 VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSF 453
+D R F+L I I+ GL+ +L+TGN+ D K+ R G++QVL RL+F
Sbjct: 423 ID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTF 475
Query: 454 IGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTD 513
TL H+ R++ + K++ PR L + WGM+CP +TPEG A GLVKNLALM +++
Sbjct: 476 ASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVG 535
Query: 514 EEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRA 573
+ P++ +E+LE +S + + V NG +G H+ P+ + +RKLRR
Sbjct: 536 SQPSPILEFLEEWSMENLEEISPAAIADATKIFV--NGCWVGIHKDPEQLMNTLRKLRRQ 593
Query: 574 GKI-GEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLD---GVRSF 629
I VS+ + ++R + I +D GR+CRPL+I +K +K+ H+ +L + S+
Sbjct: 594 MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 653
Query: 630 DDFLREGLIEYLDVNEENNALIALYEGDATPDT------------THIEIEPFTILGVIA 677
D + G++EY+D EE ++A+ TPD TH EI P ILGV A
Sbjct: 654 QDLVASGVVEYIDTLEEETVMLAM-----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 708
Query: 678 GLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVG 737
+IP+P HNQSPRNTYQ AMGKQAMG N RMD+L ++L YPQ+PL+TTR++E +
Sbjct: 709 SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 768
Query: 738 YDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDR 797
+ +L AG N+ VA+ SY+GY+ ED+++MN+S++DRGF R + + Y K +
Sbjct: 769 FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEV 828
Query: 798 ILRPDRTGPGAERMQI---LDDDGLAAPGEIIKPNDVYINKESPL-ETRGSIMSPTGQTD 853
+P R R I LDDDGL APG + +DV I K L E + S T+
Sbjct: 829 FEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELES----TN 884
Query: 854 SRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGV 913
RY + ET +VD+V + ++ G K +R R P++GDKF+SRHGQKG
Sbjct: 885 RRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 944
Query: 914 CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 973
CG +QED PF+ GI PD+I+NPH PSRMT+G +IE L GK + G + F +
Sbjct: 945 CGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFND 1004
>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
GN=RPB2 PE=2 SV=1
Length = 1191
Score = 582 bits (1500), Expect = e-165, Method: Compositional matrix adjust.
Identities = 371/995 (37%), Positives = 539/995 (54%), Gaps = 78/995 (7%)
Query: 30 DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI------------VSGIDPS 77
D + ++ + + +GLV+Q LDSF+ F+ +++IV + I S +
Sbjct: 24 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 83
Query: 78 IF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTT 133
I+ + F + + +P MT DG + L P RL ++TY+AP+ V++ ++ H +
Sbjct: 84 IYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 143
Query: 134 MEKND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
E D V IG++PIMLRS C LY E +L LGECPLD GGYFII G+EKVL+ QE
Sbjct: 144 TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQE 203
Query: 191 QLSKNRVIIDTDKKGNINASVTS------------STETVK--SKTVIQMEKGKMYL--L 234
++S N V + ++ N A V ST V+ S+T + Y+
Sbjct: 204 KMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSRTSAKGGSSGQYIRAT 263
Query: 235 LNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKA 291
L +IPI++V +A+G +D+++++ + D + LL PS+EE I Q+ A
Sbjct: 264 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEA--FVIQNQQVA 321
Query: 292 LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
L+Y+ GK + +T G R A IL+ L +V V K +Y ++ R++
Sbjct: 322 LDYI-GK-RGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLC 379
Query: 352 MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSR 407
L + A DD+D+ GNKRL+L+G L+ LF LF+ + +V QK VD
Sbjct: 380 ALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVD-------NGKD 432
Query: 408 FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
+L I +IT GL+ +L+TGN+ R G++QVL RL++ TL H+ R++
Sbjct: 433 VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 492
Query: 468 EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
+ K++ PR L SQWGM+CP +TPEG+ACGLVKNLALM ++T P++ G
Sbjct: 493 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 552
Query: 528 VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
E+ E +S + P + + NG +G HR P +R+LRR + V V + +
Sbjct: 553 TENFEEISPAVI--PQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIR 610
Query: 588 QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVR----SFDDFLREGLIEYLDV 643
+ + I +D GR RPL I +K IK+ ++ L + D + +G IEY+D
Sbjct: 611 LKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDT 670
Query: 644 NEENNALIA----------LYEGDATPDT-THIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
EE +I+ L GDA DT TH EI P ILGV A +IP+P HNQSPRNT
Sbjct: 671 EEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 730
Query: 693 YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
YQ AMGKQAMG N RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+
Sbjct: 731 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIS 790
Query: 753 SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER-- 810
YSGY+ ED+++MN+SS+DRGF R + + Y +K + RPDR R
Sbjct: 791 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHG 850
Query: 811 -MQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGE 869
LDDDGLA PG + DV I K +P+ S GQ SRY + E
Sbjct: 851 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPI----SQDDAQGQA-SRYTRKDHSTSLRHSE 905
Query: 870 TCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERG 929
T +VD+V L ++ +G +K +R R P++GDKFSSRHGQKG G QED P++ G
Sbjct: 906 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 965
Query: 930 ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 964
I PD+I+NPH PSRMT+G++IE + GK G+
Sbjct: 966 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1000
>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila
melanogaster GN=RpII140 PE=2 SV=2
Length = 1176
Score = 578 bits (1489), Expect = e-163, Method: Compositional matrix adjust.
Identities = 357/1008 (35%), Positives = 552/1008 (54%), Gaps = 81/1008 (8%)
Query: 38 FLKVRGLVKQHLDSFNYFVNTGIRKIV--------RANDRIVSG---IDPSIFLRFKDVR 86
+ +GLV+Q LDSF+ F+ +++IV +A + SG P L+F+ +
Sbjct: 34 YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIY 93
Query: 87 IGQPS-MTVDGVSEKLNPHMCRLSDMTYAAPILVNI---EYVQGSHTEKTTMEKNDVVIG 142
+ +P+ DG + P+ RL ++TY+AP+ V+I + V+G +T +K IG
Sbjct: 94 LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQK--TFIG 151
Query: 143 RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTD 202
+IPIMLRS C+L + +L L ECPLDPGGYFII G+EKVL+ QE+++ N V + +
Sbjct: 152 KIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 211
Query: 203 KKGN------INASVTSSTETVKSKTVIQMEKG-----------KMYLLLNQFVKKIPIM 245
K G I + + S+ + V M +G ++ +L ++IPIM
Sbjct: 212 KDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIM 271
Query: 246 VVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302
+V +A+G +D+++++ + DP ++ PS++E + Q AL ++ + R
Sbjct: 272 IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVVQEQNVALNFIGARGARP 329
Query: 303 TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKD 362
G + R A IL+ L +V V + K +++ M+ R++ A L + +DD+D
Sbjct: 330 --GVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 387
Query: 363 YVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDS 418
+ GNKRL+L+G L++ LF LFK ++ EV QK +D R F+L I +
Sbjct: 388 HYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFID-------RGKDFNLELAIKTNI 440
Query: 419 ITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPR 477
IT GL +L+TGN+ D K+ R G++QVL RL+F TL H+ RV+ + K++ PR
Sbjct: 441 ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR 500
Query: 478 ALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGE 537
L + WGMLCP +TPEG A GLVKNLALM +++ + P++ +E+LE ++
Sbjct: 501 QLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 560
Query: 538 ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI-GEFVSVFVNEKQRCVYIASD 596
+ + V NG +G HR P+ +RKLRR I VS+ + + R + I +D
Sbjct: 561 AIADATKIFV--NGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTD 618
Query: 597 GGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF-----LREGLIEYLDVNEENNALI 651
GR+CRPL+I + G +K+ H++ L + R ++++ + G++EY+D EE +I
Sbjct: 619 AGRICRPLLIVENGSLLLKKTHVEMLKE--RDYNNYSWQVLVASGVVEYIDTLEEETVMI 676
Query: 652 ALYEGDATPDT--------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMG 703
A+ D D TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 677 AMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 736
Query: 704 NIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAI 763
N RMD+L ++L YP +PL+TTR++E + + +L AG N+ VA++ Y+GY+ ED++
Sbjct: 737 VYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 796
Query: 764 VMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDR---TGPGAERMQILDDDGLA 820
++N S+++RGF R + + Y K + +P R G LDDDG+
Sbjct: 797 ILNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGII 856
Query: 821 APGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCS 880
APG + +DV I K L + + S+ R A + + ET +VD+V L
Sbjct: 857 APGIRVSGDDVVIGKTITLPENDDELDSNTKRFSK-RDASTFLR--NSETGIVDQVMLTL 913
Query: 881 DKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHG 940
+ G K +R R P++GDKF+SRHGQKG CG +QED F+ G+ PD+I+NPH
Sbjct: 914 NSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHA 973
Query: 941 FPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESIRCFF 988
PSRMT+G +IE L GK G + G + F + A V+ I F
Sbjct: 974 IPSRMTIGHLIECLQGKLGSNKGEIGDATPFND----AVNVQKISTFL 1017
>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana
GN=RPB135 PE=2 SV=2
Length = 1188
Score = 570 bits (1470), Expect = e-161, Method: Compositional matrix adjust.
Identities = 359/995 (36%), Positives = 536/995 (53%), Gaps = 78/995 (7%)
Query: 30 DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRI------------VSGIDPS 77
D + ++ + + +GLV+Q LDSF+ F+ +++IV + I S +
Sbjct: 25 DAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAET 84
Query: 78 IF-LRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--EYVQGSHTEKTT 133
I+ + F + + +P MT DG + L P RL ++TY+AP+ V++ ++ H +
Sbjct: 85 IYKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 144
Query: 134 MEKND---VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190
E D V IG++PIMLRS C L+ E +L LGECP D GGYFII G+EKVL+ QE
Sbjct: 145 TETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 204
Query: 191 QLSKNRVIIDTDKKGNINA------SVTSSTETVKSKTVIQM---------EKGKMYLLL 235
++S N V + ++ N A S+ + S ++M G+
Sbjct: 205 KMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCT 264
Query: 236 NQFVK-KIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKA 291
+++ +IPI++V +A+G +D+++++ + D + LL PS+EE I Q A
Sbjct: 265 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEA--FVIQNQLVA 322
Query: 292 LEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEA 351
L+Y+ GK + +T G R A IL+ L +V + + K +Y ++ R++
Sbjct: 323 LDYI-GK-RGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLC 380
Query: 352 MLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMI----SEVQKTVDIILSKPSRSSR 407
L + DD+D+ GNKRL+L+G L+ LF LF+ + S VQK VD
Sbjct: 381 ALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVD-------NGKE 433
Query: 408 FDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQF 467
+L I +IT GL+ +L+TGN+ R G++QVL RL++ TL H+ R++
Sbjct: 434 VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPI 493
Query: 468 EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLG 527
+ K++ PR L SQWGM+CP +TPEG+ACGLVKNLALM ++T P++ G
Sbjct: 494 GREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWG 553
Query: 528 VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEK 587
E+ E +S + P + + NG+ +G HR P +R+LRR + V V + +
Sbjct: 554 TENFEEISPSVI--PQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIR 611
Query: 588 QRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDD----FLREGLIEYLDV 643
+ + I +D GR RPL I D IK+ + L + +D + +G IEY+D
Sbjct: 612 LKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDT 671
Query: 644 NEENNALIALYEGD-----------ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNT 692
EE +I++ D T + TH EI P ILGV A +IP+P HNQSPRNT
Sbjct: 672 EEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 731
Query: 693 YQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVM 752
YQ AMGKQAMG N RMD+L Y+L YPQ+PL+TTR +E + + +L AG NA VA+
Sbjct: 732 YQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIS 791
Query: 753 SYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER-- 810
YSGY+ ED+++MN+SS+DRGF R + + Y +K + RPDR R
Sbjct: 792 CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHG 851
Query: 811 -MQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGE 869
LDDDGLA PG + DV I K +P+ S GQ+ SRY + E
Sbjct: 852 SYDKLDDDGLAPPGTRVSGEDVIIGKTTPI----SQDEAQGQS-SRYTRRDHSISLRHSE 906
Query: 870 TCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERG 929
T +VD+V L ++ +G +K +R R P++GDKFSSRHGQKG G QED P++ G
Sbjct: 907 TGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEG 966
Query: 930 ICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 964
+ PD+I+NPH PSRMT+G++IE + GK G+
Sbjct: 967 VTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK 1001
>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB2 PE=3 SV=1
Length = 1141
Score = 564 bits (1453), Expect = e-159, Method: Compositional matrix adjust.
Identities = 337/976 (34%), Positives = 539/976 (55%), Gaps = 67/976 (6%)
Query: 32 FQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPS--------IFLRFK 83
+ ++ F + +GLV+Q LDSF+ FV T +++++ + I+ P+ I +RF
Sbjct: 11 WSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIVQSAPTAGIETQKRIAVRFG 70
Query: 84 DVRIGQPSMTV--DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKND--- 138
+ + +P + DG + + P+ R+ D+TYA+P+ +++ + + +E ++K+
Sbjct: 71 QIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDV--TKETLSELGVVDKHKYSR 128
Query: 139 VVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVI 198
V G +P+MLRS CVLYG + +L LGECP D GGYFI+ G+EKV++ QE+++ N V
Sbjct: 129 VPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGSEKVIVAQERMASNTVY 188
Query: 199 IDTDKKGNIN---ASVTSSTE-TVKSKTVIQME----KGKMYLLLNQFVKKIPIMVVMKA 250
+ + A + S E + ++ + + M+ G + + L + +P+ V+ +A
Sbjct: 189 VFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCRSPGVIRVSLPLVKQDVPLFVLYRA 248
Query: 251 MGMESDQEVVQMV--GRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPP 308
+G SD+E++ + D LL SIEE + Q AL+Y+ GK + + G+P
Sbjct: 249 LGFLSDKEIIDHILYEDDEEMFELLKESIEE--GTVVQDQNVALDYI-GK-RSAPIGTPQ 304
Query: 309 NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKR 368
R A +L L ++ K +++ +++R++ L + DD+D+ G KR
Sbjct: 305 EKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKR 364
Query: 369 LELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLS 428
++LSG L++ LF LFK + + + + + F+++ + IT G L+
Sbjct: 365 MDLSGPLLASLFRTLFKKLCVDTTRHMQKCIEN---GREFNIALGLKASIITQGFRYALA 421
Query: 429 TGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGML 487
TGN+ D + R G+ QVL R +F+ TL H+ RV+ EK K++ PR L + WGM+
Sbjct: 422 TGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNTHWGMV 481
Query: 488 CPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLV 547
CP +TPEG+ACGLVKNL+LM +++ GPL+ GVE LE +S +L V
Sbjct: 482 CPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLEEISTSQLDAATKIFV 541
Query: 548 IFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA 607
NG+ +G H P ++ LRR+ ++ + VS+ + +++ + + SD GR CRPL++
Sbjct: 542 --NGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDIREKEIRVQSDAGRPCRPLLVV 599
Query: 608 DKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALY----------EGD 657
I +++L G +D+ + G IE+LDV EE ++IA+ D
Sbjct: 600 KDNKLVITAEDIRKLKRGEIKWDNLVTSGFIEFLDVEEEEMSMIAMNTKILADESRNSSD 659
Query: 658 ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLL 717
+ TH EI P ILG+ A IP+P HNQSPRNTYQ AMGKQAMG A N L RMD+L
Sbjct: 660 VSVSYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSAMGKQAMGIYATNFLLRMDTLS 719
Query: 718 YLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRC 777
+L YPQ+PL+TT+++E + + +L +GQNA VA+ YSGY+ ED+I+MN+S++DRG R
Sbjct: 720 NILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFRS 779
Query: 778 IVVKKYT--------AINQKYANSTSDRILRPDRTGPGAERMQILDDDGLAAPGEIIKPN 829
+ YT +N+++ + +LR LDDDGL +PG + +
Sbjct: 780 FFYRTYTDQESMSRPGVNEEFCKPSRGAVLRMKNLN-----YNKLDDDGLISPGTRVTGD 834
Query: 830 DVYINKESPL--ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLC 887
DV I K +P+ R + +P + R+T ET +VD V + ++K+G
Sbjct: 835 DVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRT------ETGIVDTV-IVTNKDGYKF 887
Query: 888 IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTV 947
K +R R P++GDKF+SRH QKG G ++QED PF+ GI PD+I+NPH PSRMT+
Sbjct: 888 SKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIINPHAIPSRMTI 947
Query: 948 GKMIELLGGKAGVSCG 963
G +IE L GK G
Sbjct: 948 GHLIECLLGKVSAMSG 963
>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB2 PE=3 SV=1
Length = 1222
Score = 553 bits (1425), Expect = e-156, Method: Compositional matrix adjust.
Identities = 352/1046 (33%), Positives = 549/1046 (52%), Gaps = 129/1046 (12%)
Query: 30 DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
D + ++ F + +GLV Q LDSFN F+N I+ ++ + ++ I
Sbjct: 25 DSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTEADNISRKY 84
Query: 79 FLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI---------------- 121
+ F + + +PSMT DGVS + P RL ++TYA+ + V I
Sbjct: 85 EISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIKKRTYEAVDIPGRDLK 144
Query: 122 -EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
E +Q E E+ + IGR+PIMLRS C+L E++L RL ECP D GGYFII
Sbjct: 145 YEIIQ---EESEDTEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMGGYFIIN 201
Query: 181 GTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKMY--- 232
G+EKVL+ QE+ + N I+ KK + A + S+ E K I + K+Y
Sbjct: 202 GSEKVLIAQERSAGN--IVQVFKKSAPSPISHIAEIRSALE--KGSRFISTLQVKLYGRE 257
Query: 233 --------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
L + IPI+++ +A+G+ D E+++ + D + +L P +EE
Sbjct: 258 GSTSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDQNDWQMLEMLKPCVEE-- 315
Query: 282 NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
I +E AL+++ G+ + + G R A IL+ FL ++ K F++
Sbjct: 316 GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFL 373
Query: 342 AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDI 397
M+ R++ L++ DD+D+ G KRL+L+G L++ LF+ LF+ + ++ Q++V+
Sbjct: 374 GYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVE- 432
Query: 398 ILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGT 456
+ F+L + +IT GL+ L+TGN+ ++ M R G++QVL R ++ T
Sbjct: 433 ------EAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSST 486
Query: 457 LGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEE 516
L H+ R + + K++ PR L + WG++CP +TPEG+ACGLVKNL+LM+ ++ +
Sbjct: 487 LSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDP 546
Query: 517 GPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKI 576
P+I+ G+E LE + +P++ V NG+ G HR P D +RKLRR G I
Sbjct: 547 VPIITFLNEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGIHRNPARLVDTIRKLRRKGDI 604
Query: 577 GEFVSVFVNEKQRCVYIASDGGRVCRPL-VIADKGIS------RIKEHHMKELL------ 623
VS+ + +++ + I +D GRV RPL V+AD + ++++ H+++L+
Sbjct: 605 TAEVSIVRDIREKELKIFTDAGRVYRPLFVVADTQHADGHKDLKVRKGHIRKLMLTEYQD 664
Query: 624 --------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT------------- 662
D ++ L +G++EY+D EE LIA+ + D P
Sbjct: 665 IEGGFEDEDINYTWTSLLNDGIVEYIDAEEEETILIAMQQEDLDPSVPQTVDPSDELDPA 724
Query: 663 ------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQL 710
TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQAMG N
Sbjct: 725 RRIKAIHHSNTFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYN 784
Query: 711 CRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSL 770
RMD++ +L YPQ+PL TTR +E + + +L AGQNA VA+ YSGY+ ED+++MN+SS+
Sbjct: 785 VRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSI 844
Query: 771 DRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERM-----QILDDDGLAAPGEI 825
D G R + + Y ++ S ++ +P RT RM + LDDDGL APG
Sbjct: 845 DSGLFRSLFFRSYMDQEKRIGMSITESFEKPHRT--NTLRMKHGTYEKLDDDGLIAPGVR 902
Query: 826 IKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 885
+ +D+ I K +P+ + GQ + + + E +VD+V + +++ G
Sbjct: 903 VSGDDIIIGKTTPIPPDAEEL---GQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGL 959
Query: 886 LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 945
+K +R T+ P++GDKF+SRHGQKG G ++ED PF+ G+ PDLI+NPH PSRM
Sbjct: 960 KFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAIPSRM 1019
Query: 946 TVGKMIELLGGKAGVSCGRFHYGSAF 971
TV +IE L K G S F
Sbjct: 1020 TVAHLIECLLSKVAALSGNEGDASPF 1045
>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2
Length = 1210
Score = 551 bits (1420), Expect = e-155, Method: Compositional matrix adjust.
Identities = 353/1032 (34%), Positives = 545/1032 (52%), Gaps = 117/1032 (11%)
Query: 30 DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-------SGIDPSIFLR- 81
D + ++ F + L +Q L SF+ FV +++IV + + +G + R
Sbjct: 16 DCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDVTRRY 75
Query: 82 ---FKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIEY-------------V 124
F + + +P+MT DG + + P RL ++TY++P+ V++
Sbjct: 76 EINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGE 135
Query: 125 QGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEK 184
+ E+ E + V IG+IPIMLRS C+L G ++EL L ECP D GGYFII G+EK
Sbjct: 136 EEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEK 195
Query: 185 VLLIQEQLSKNRVIIDTDKKG---------NINASVTSSTETVKSKTVIQMEKGK----- 230
V++ QE+ + N I+ KK I +++ + + S + M +
Sbjct: 196 VIIAQERSAAN--IVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENSGQ 253
Query: 231 -MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDP---RYSALLLPSIEECANLDIY 286
+ L IPI++V +A+G+ D+++++ + DP + ++ P IEE I
Sbjct: 254 TIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEA--FVIQ 311
Query: 287 TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLR 346
++ AL+Y+ GK + ST G R A IL+ L ++ K F++ M+
Sbjct: 312 DKDIALDYI-GK-RGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIH 369
Query: 347 RMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSS 406
RM+ L + DD+D+ G KRL+L+G L++ LF LF+ M +V K + K ++
Sbjct: 370 RMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYK----YMQKCVETN 425
Query: 407 R-FDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS 464
R F+L+ + + IT GL +L+TGN+ D KR ++R G++QVL R +F TL H+ R +
Sbjct: 426 REFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTN 485
Query: 465 PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCY 524
+ K++ PR L + WGM+CP +TPEG+ACGLVKNL+LM++V+ P+I
Sbjct: 486 TPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLE 545
Query: 525 CLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFV 584
G+E LE + +PN+ V NG+ LG HR P + +R LRR I VS+
Sbjct: 546 EWGLETLEDYNPSA--SPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVR 603
Query: 585 NEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELLDGVRSFD------- 630
+ +++ + + +D GR+CRPL I D +G I++ H+++L++ +D
Sbjct: 604 DIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKDRYDIDPEQRF 663
Query: 631 ---DFLREGLIEYLDVNEENNALIAL--------------YEGDATPD------------ 661
+ GLIEYLD EE +IA+ YE D
Sbjct: 664 GWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPH 723
Query: 662 ---TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
TH EI P ILG++A +IP+P HNQSPRNTYQ AMGKQAMG N RMD++
Sbjct: 724 VHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMAN 783
Query: 719 LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
+L YPQ+PL TTR++E + + +L AGQNA VA++ YSGY+ ED+I+MN++S+DRG R I
Sbjct: 784 ILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSI 843
Query: 779 VVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ-----ILDDDGLAAPGEIIKPNDVYI 833
+ YT +K + + RP R+ RM+ L+DDGL APG + D+ I
Sbjct: 844 FYRTYTDQEKKIGMTVMEEFERPVRS--TTLRMKHGTYDKLEDDGLIAPGTRVSGEDIII 901
Query: 834 NKESPLETRGSIMSPTGQTDSRYRSARQTYKGP--DGETCVVDRVALCSDKNGDLCIKFL 891
K +P+ + Q A++ P E+ +VD+V + +++ G +K
Sbjct: 902 GKTAPIPLDHEELGQRTQL-----HAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVR 956
Query: 892 IRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 951
+R TR P++GDKF+SRHGQKG G + ED PFS +GI PD+I+NPH PSRMTV ++
Sbjct: 957 MRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLV 1016
Query: 952 ELLGGKAGVSCG 963
E K G
Sbjct: 1017 ECQLSKVSALSG 1028
>sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB2 PE=1 SV=2
Length = 1224
Score = 548 bits (1411), Expect = e-154, Method: Compositional matrix adjust.
Identities = 354/1049 (33%), Positives = 550/1049 (52%), Gaps = 122/1049 (11%)
Query: 22 AAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV---------- 71
+AP+ + D + ++ F + +GLV Q LDSFN FV+ ++ I+ + ++
Sbjct: 22 SAPI-TAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTE 80
Query: 72 -SGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNIE------- 122
I + F + + +P + DGV+ L P RL ++TY++ + V+++
Sbjct: 81 SDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAI 140
Query: 123 --------YVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPG 174
Y + + E V IGR+PIMLRS C L E++L +L ECP D G
Sbjct: 141 DVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMG 200
Query: 175 GYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKG 229
GYFII G+EKVL+ QE+ + N I+ KK + A + S+ E K I +
Sbjct: 201 GYFIINGSEKVLIAQERSAGN--IVQVFKKAAPSPISHVAEIRSALE--KGSRFISTLQV 256
Query: 230 KMY-----------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLP 275
K+Y L + IPI+++ +A+G+ D E+++ + D + +L P
Sbjct: 257 KLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKP 316
Query: 276 SIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFR 335
+E+ I +E AL+++ G+ + + G R A IL+ FL ++
Sbjct: 317 CVED--GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFES 372
Query: 336 PKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV---- 391
K F++ M+ R++ L++ DD+D+ G KRL+L+G L++ LF+ LFK + ++
Sbjct: 373 RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYM 432
Query: 392 QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLAR 450
Q+TV+ + F++ I +IT GL+ L+TGN+ ++ M R G++QVL R
Sbjct: 433 QRTVE-------EAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNR 485
Query: 451 LSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHV 510
++ TL H+ R + + K++ PR L + WG++CP +TPEG+ACGLVKNL+LM+ +
Sbjct: 486 YTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCI 545
Query: 511 TTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKL 570
+ + P+I+ G+E LE + +P++ V NG+ G HR P + +R L
Sbjct: 546 SVGTDPMPIITFLSEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGVHRNPARLMETLRTL 603
Query: 571 RRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGIS------RIKEHHMKELL- 623
RR G I VS+ + +++ + I +D GRV RPL I + S ++++ H+ +L+
Sbjct: 604 RRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMA 663
Query: 624 ----DGVRSFDD--------FLREGLIEYLDVNEENNALIALYEGDATPDT--------- 662
D F+D L EGL+EY+D EE + LIA+ D P
Sbjct: 664 TEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDV 723
Query: 663 ---------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 724 DPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLT 783
Query: 708 NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
N RMD++ +L YPQ+PL TTR +E + + +L AGQNA VA+ YSGY+ ED+++MN+
Sbjct: 784 NYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQ 843
Query: 768 SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ-----ILDDDGLAAP 822
SS+DRG R + + Y +KY S ++ +P RT RM+ LDDDGL AP
Sbjct: 844 SSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRT--NTLRMKHGTYDKLDDDGLIAP 901
Query: 823 GEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK 882
G + DV I K +P+ + GQ + + + E +VD+V + +++
Sbjct: 902 GVRVSGEDVIIGKTTPISPDEEEL---GQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQ 958
Query: 883 NGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFP 942
+G +K +R T+ P++GDKF+SRHGQKG G ++ED PF+ GI PDLI+NPH P
Sbjct: 959 DGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIP 1018
Query: 943 SRMTVGKMIELLGGKAGVSCGRFHYGSAF 971
SRMTV +IE L K G S F
Sbjct: 1019 SRMTVAHLIECLLSKVAALSGNEGDASPF 1047
>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL
Y-65) GN=RPB2 PE=3 SV=1
Length = 1223
Score = 543 bits (1398), Expect = e-153, Method: Compositional matrix adjust.
Identities = 351/1049 (33%), Positives = 550/1049 (52%), Gaps = 123/1049 (11%)
Query: 23 APVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV----------- 71
AP+ + D + ++ F + +GLV Q LDSFN FV+ ++ I+ + ++
Sbjct: 21 API-TAEDTWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTEQ 79
Query: 72 SGIDPSIFLRFKDVRIGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVNI--------- 121
I + F + + +P + DGV+ L P RL ++TY++ + V++
Sbjct: 80 DNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVTKRTYEAVD 139
Query: 122 ------EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGG 175
Y + + E V IGR+PIMLRS C L E++L +L ECP D GG
Sbjct: 140 VPGRDLNYQLIAEESEEDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGG 199
Query: 176 YFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGK 230
YFII G+EKVL+ QE+ + N I+ KK + A + S+ E K I + K
Sbjct: 200 YFIINGSEKVLIAQERSAGN--IVQVFKKAAPSPISHVAEIRSALE--KGSRFISTLQVK 255
Query: 231 MY-----------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPS 276
+Y L + IPI+++ +A+G+ D E+++ + D + +L P
Sbjct: 256 LYGRESSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPC 315
Query: 277 IEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRP 336
+E+ I +E AL+++ G+ + + G R A IL+ FL ++
Sbjct: 316 VED--GFVIQDRETALDFI-GR-RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESR 371
Query: 337 KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----Q 392
K F++ M+ R++ L++ DD+D+ G KRL+L+G L++ LF+ LF+ + ++ Q
Sbjct: 372 KAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQ 431
Query: 393 KTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARL 451
+TV+ ++ F++ I +IT GL+ L+TGN+ ++ M R G++QVL R
Sbjct: 432 RTVE-------EANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRY 484
Query: 452 SFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT 511
++ TL H+ R + + K++ PR L + WG++CP +TPEG+ACGLVKNL+LM+ ++
Sbjct: 485 TYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCIS 544
Query: 512 TDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLR 571
+ P+I+ G+E LE + +P++ V NG+ G HR P + +R LR
Sbjct: 545 VGADPMPIITFLSEWGMEPLEDYVPHQ--SPDATRVFVNGVWHGVHRNPARLMETLRTLR 602
Query: 572 RAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIA--DKGISR----IKEHHMKELL-- 623
R G I VS+ + +++ + I +D GRV RPL I D+ + R +++ H+ +L+
Sbjct: 603 RKGDINPEVSMIRDIREQELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKGHVAKLMAT 662
Query: 624 ------DGVRSFDDF-----LREGLIEYLDVNEENNALIALYEGDATPDT---------- 662
G +D+ L EGL+EY+D EE + LIA+ D P
Sbjct: 663 EYQDIEGGFEDAEDYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTAVEQDIPKENV 722
Query: 663 ---------------THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
TH EI P ILGV A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 723 DLAKRIKVTHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLT 782
Query: 708 NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
N RMD++ +L YPQ+PL TTR +E + + +L AGQNA VA+ YSGY+ ED+++MN+
Sbjct: 783 NYNFRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQ 842
Query: 768 SSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERMQ-----ILDDDGLAAP 822
SS+DRG R + + Y +KY S ++ +P RT RM+ LD+DGL AP
Sbjct: 843 SSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRT--NTLRMKHGTYDKLDEDGLIAP 900
Query: 823 GEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK 882
G + D+ I K +P+ + GQ + + + E +VD+V + +++
Sbjct: 901 GVRVSGEDIIIGKTTPIAPDEEEL---GQRTAYHSKRDASTPLRSTENGIVDQVLITTNQ 957
Query: 883 NGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFP 942
+G +K +R T+ P++GDKF+SRHGQKG G ++ED PF+ GI PDLI+NPH P
Sbjct: 958 DGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIP 1017
Query: 943 SRMTVGKMIELLGGKAGVSCGRFHYGSAF 971
SRMTV +IE L K G S F
Sbjct: 1018 SRMTVAHLIECLLSKVAALSGNEGDASPF 1046
>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB2 PE=3 SV=3
Length = 1236
Score = 525 bits (1353), Expect = e-148, Method: Compositional matrix adjust.
Identities = 342/1059 (32%), Positives = 537/1059 (50%), Gaps = 127/1059 (11%)
Query: 30 DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIV-----------SGIDPSI 78
D + ++ F + +GLV Q LDSF+ F+ + I+++V + R++ +
Sbjct: 22 DCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSEEDHENRRY 81
Query: 79 FLRFKDVRIGQPSMTV-DGVSEKLNPHMCRLSDMTYAAPILVNI-EYVQGSHTE------ 130
+ F + I +P+ T DG + + P RL ++TY++P+ V++ + V S
Sbjct: 82 EITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLKSDDNAGNEHE 141
Query: 131 --------KTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182
K V +G++PIMLRS C+L E E L ECP D GGYF+I G+
Sbjct: 142 LEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYFVINGS 201
Query: 183 EKVLLIQEQLSKNRVIIDTDKKGNIN-----ASVTSSTETVKSKTVIQMEKGKMY----- 232
EKVL+ QE+ + N I+ KK + A + S+ E + +I + K+Y
Sbjct: 202 EKVLIAQERSAAN--IVQVFKKAAPSPISHVAEIRSALE--RGSRLISSMQIKLYGREEK 257
Query: 233 --------LLLNQFVKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIEECA 281
L + IPI++V +A+G+ D ++++ + D + +L P +EE
Sbjct: 258 STSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPCVEE-- 315
Query: 282 NLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYV 341
I +E AL+++ +R G R A IL+ L N+ K F++
Sbjct: 316 GFVIQEREVALDFIG---RRGALGIKREKRIQYAKDILQKELLPNITQDEGFETRKAFFL 372
Query: 342 AVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSK 401
M+ R++ L + DD+D+ G KRL+L+G L++ LF LFK + ++ + +
Sbjct: 373 GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQRCVEN 432
Query: 402 PSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMH-RKGMTQVLARLSFIGTLGHM 460
F+L+ + +IT GL +L+TGN+ ++ M R G++QVL R ++ TL H+
Sbjct: 433 ---DKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHL 489
Query: 461 TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI 520
R + + K++ PR L + WG++CP +TPEG+ACGLVKNL+LM+ ++ P++
Sbjct: 490 RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPIL 549
Query: 521 SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFV 580
G+E LE ++P+S V NG+ +G HR P D MR LRR G I V
Sbjct: 550 YFLEEWGMEPLEDYVPS--NSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGDISPEV 607
Query: 581 SVFVNEKQRCVYIASDGGRVCRPLVIAD-------KGISRIKEHHMKELL---------- 623
S+ + +++ I +D GRV RPL I D KG ++++ H+ +LL
Sbjct: 608 SIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYAT 667
Query: 624 ------DGVRSFDDFLREGLIEYLDVNEENNALIALYEGD---------ATPDTT----- 663
+G + + +G++EY+D EE +IA+ D AT +
Sbjct: 668 NEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLTATQQKSLQLEE 727
Query: 664 ---------------------HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAM 702
H EI P ILGV A +IP+P HNQSPRNTYQ AMGKQAM
Sbjct: 728 QELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAM 787
Query: 703 GNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDA 762
G N RMD++ +L YPQ+PL TTR +E + + +L AGQNA VA+ YSGY+ ED+
Sbjct: 788 GVFLTNYSVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDS 847
Query: 763 IVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER---MQILDDDGL 819
++MN+SS+DRG R + + Y + ++ + +P R+ + + LDDDGL
Sbjct: 848 MIMNQSSIDRGLFRSLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGL 907
Query: 820 AAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALC 879
APG + D+ I K +P+ + Q ++ R A + E+ +VD+V L
Sbjct: 908 IAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTK-RDASTPLRST--ESGIVDQVLLT 964
Query: 880 SDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPH 939
++ +G +K +R T+ P++GDKF+SRHGQKG G + ED PF+ +GI PDLI+NPH
Sbjct: 965 TNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPH 1024
Query: 940 GFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHA 978
PSRMTV +IE L K G S F + + A
Sbjct: 1025 AIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTDVTAEA 1063
>sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoB PE=3 SV=1
Length = 1195
Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust.
Identities = 326/1050 (31%), Positives = 528/1050 (50%), Gaps = 137/1050 (13%)
Query: 33 QLLPEFLKVRGLVKQHLDSFNYFV------NTGIRKIVRANDRIVSGIDPSIF------- 79
+++ + K G+V LDS N F N+ +++IV ++ DP F
Sbjct: 3 EIVDAYFKKYGIVNHQLDSMNSFYATPDNPNSVMQQIVDET-KVSDDADPGYFVLDPAKT 61
Query: 80 ------LRFKDVR------------IGQPSMT-VDGVSEKLNPHMCRLSDMTYAAPILVN 120
+ + VR IG+P + G S ++ P+ RL D+ Y AP+ +
Sbjct: 62 GGHDIRIYYGRVRENGHYVGEQTIFIGKPEIKEASGASNQITPNEARLRDLNYLAPVTLK 121
Query: 121 IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKD----------------EAELA 164
+ V+ + + + K +G +P+M+RS C L ++ +L
Sbjct: 122 LRIVEDGIEKGSEIIK----VGDLPVMVRSKICTLSEENLDQYIEKNNGPIGLSRREKLQ 177
Query: 165 RLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSS-TETVKSKTV 223
+GE P DPGGYFII G+E+V++ E L+ N+++++ + + V+ ++ + +
Sbjct: 178 YVGEDPDDPGGYFIIGGSERVIVSLEDLAPNKIMVEWEDRYESKVEVSKVFSQRGGFRAL 237
Query: 224 IQMEKGK---MYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEEC 280
MEKG + + + +P++++MKA+G+E D +V + P ++ +IE+
Sbjct: 238 TSMEKGTDGTINVSIPSVAGTVPLVILMKALGLERDVDVHDAIASVPEMEPIIYSNIEDS 297
Query: 281 ANLDIY------TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNF 334
N + T E A+ YLE KR G R+ + +L L ++ ++
Sbjct: 298 KNPKVLPPNGVNTTEDAISYLE---KRFAAGQAKEFRDKKISQMLDHSLLPHLGDSPSDR 354
Query: 335 RPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKT 394
K Y+ M R ++E L DDKD++ NKR++L+G L+ LF F++++ +++
Sbjct: 355 IRKAIYLGRMARSLLELSLGIRKEDDKDHLANKRIKLAGDLMDELFRSAFQSVMKDLKYQ 414
Query: 395 VDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFI 454
++ + R + + +D +T + +STGN+ R G++Q+L R+S +
Sbjct: 415 LEKTYN---RKRGIKIRPAVRQDLLTQRVLHAMSTGNW-----IGGRTGVSQLLDRVSNL 466
Query: 455 GTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE 514
T+ H+ R+ +++ R L P+QWG +CP +TPEG+ CGLVKN AL+ +VT
Sbjct: 467 STISHLRRIISPLTRTQPHFEARDLHPTQWGRICPNETPEGQNCGLVKNAALLINVTQGI 526
Query: 515 EEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAG 574
+ ++ + + V E+L +P V NG +G H P+ +R+ RR+G
Sbjct: 527 DPDSVMEILKGMDVR--EVLE----ESPKKGRVYLNGDFIGYHDDPRYLVSRIREERRSG 580
Query: 575 KIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLR 634
++ + V+V ++ V + SD GR+ RPL+I G + + ++ L G SF+D ++
Sbjct: 581 RMSDEVNVRYDDNTNEVIVNSDRGRLRRPLLILKDGKTVLDRTMIERLKHGEISFEDLVK 640
Query: 635 EGLIEYLDVNEENNALIALYEGDA------------------------------------ 658
+G IE+LD EE + +A+Y D
Sbjct: 641 QGAIEWLDAEEEEDTYVAVYAYDIPEKCPHCNSYLYRSMVDWVNPGESEITLECGFCHQR 700
Query: 659 -------TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
+ + TH+EI+P ILGV+A +IPYP HN SPR T AM KQ++G N
Sbjct: 701 FNVPSKLSKENTHLEIDPAMILGVVASIIPYPEHNSSPRITIASAMAKQSLGFAQSNVRI 760
Query: 712 RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
R D+ +LL YPQ PL+ TR ++ + YD+ AGQN VAV+SY GY+I+DA+V+NK++++
Sbjct: 761 RPDTRGHLLHYPQVPLVRTRVMDYIHYDRRPAGQNFVVAVLSYEGYNIQDALVINKAAIE 820
Query: 772 RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGA---ERMQILDDDGLAAPGEIIKP 828
RG GR + Y+A ++Y D+ P GA E + LDD G+ P ++
Sbjct: 821 RGLGRSTFFRTYSAEERRYPGGQEDKFEIPTHDIIGARAEEYYKNLDDSGIIFPEAYVEG 880
Query: 829 NDVYINKESP---LETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD 885
+DV I K SP LE + P R R + T + E+ VD V L ++
Sbjct: 881 SDVLIGKTSPPRFLEEGEERLGP-----QRRRESSVTMR--PNESGYVDNVFLTVSESNS 933
Query: 886 LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRM 945
+K +R R PELGDKF+SRHGQKGV G +V QED PF+E GI PDLI NPH PSRM
Sbjct: 934 RVVKIKVRSERIPELGDKFASRHGQKGVVGLVVPQEDMPFTEDGIIPDLIFNPHSIPSRM 993
Query: 946 TVGKMIELLGGKAGVSCGRFHYGSAF-GEP 974
TVG ++E++GGK GRF G+ F GEP
Sbjct: 994 TVGHILEMIGGKIASRTGRFIDGTIFSGEP 1023
>sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga
mimivirus GN=RPO2 PE=1 SV=2
Length = 1196
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 312/1031 (30%), Positives = 505/1031 (48%), Gaps = 126/1031 (12%)
Query: 32 FQLLPEFLKV--RGLVKQHLDSFNYFVNTGIRKIVRANDRIVS--GIDPSIF---LRFKD 84
F LL F + + LVK H+DSFN F+ I I++ D ++S + I L F D
Sbjct: 21 FALLDLFFEKDKQVLVKHHIDSFNQFIEEIIPNILQGGDNVISEKATENKIIRYRLTFND 80
Query: 85 VRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGS---HTEKTTME-----K 136
+ I P T++ L P ++Y+A + Q T+KT +
Sbjct: 81 LGIKPP--TLENEENLLYPLDAIRKQISYSAKYTATVTQWQDIVDIDTKKTETRIIGSPE 138
Query: 137 NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196
DV I +IPIM+ S C L + + C D GGYFI+ G+EKV+L E + +
Sbjct: 139 KDVPIAKIPIMVLSKYCNLTLRPDIAGK---HCKYDAGGYFIVNGSEKVVLSVESMIPRK 195
Query: 197 VIIDTDKKGN-----INASVTSSTETVKSKTV--IQMEKGKMYLLLNQFVKKIPIMVVMK 249
++ T + N + +++ V + + ++M++ +L K++ I ++
Sbjct: 196 PVVFTQRDQNSLLYYVRVQSIPASQFVGNPQLFTVKMKRDNSIILSIPHFKEVSIFTFIR 255
Query: 250 AMGMESDQEVVQMVGRDPRYSALLLPSIEEC---ANLDIYTQEKALEYLEGKVKRS-TF- 304
A+G+E+D+++V + D + LL + C +N T+E+ALE + ++K + TF
Sbjct: 256 ALGIETDEDIVDSI-LDVKKEKDLLNLLSICMNSSNTPSVTKEEALEIMANQIKSTKTFT 314
Query: 305 GSPPNDREGRAFSILRDVFLANVPVH--NNNFRP------KCFYVAVMLRRMVEAML--- 353
+ P + + L + V H + P K Y+ M+ ++++ L
Sbjct: 315 DTNPEVKAEQRRRYLDKIMTQFVLPHITSGTGDPEIDKIYKAHYICYMIHKLLKCYLRGA 374
Query: 354 ----NKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQK---TVDIILSKPSRSS 406
DD+D + NKR++L+G+L+ LF+ + M+++ K T +I KP
Sbjct: 375 REVEEYRGCDDRDSMVNKRIDLTGRLLGGLFKQFYDKMLNDCNKIFRTKNIDDKKPP--- 431
Query: 407 RFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRV-SP 465
++ I +SI GL + LSTGNF + RKG++Q+L R++ + +L +M RV +P
Sbjct: 432 --NIIPHIKPNSIEQGLRQALSTGNFGSQS----RKGLSQMLNRMNHLHSLSYMRRVITP 485
Query: 466 QFEKSR-KVSGPRALQPSQWGMLCPCDTPEGE-ACGLVKNLALMTHVTTDEEEGPLISLC 523
+ S K++ PR L +Q+G +CP ++PEG+ GLVKN+A+M +T + I
Sbjct: 486 TVDASTMKMTSPRHLHNTQYGSMCPLESPEGKPKTGLVKNMAMMEGITINMNSQIPIIES 545
Query: 524 YCLG-VEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
Y +G + LE + + LH V NG LG R + +R +R G++ V +
Sbjct: 546 YLIGKITTLESANKKRLH--QYVKVFLNGNWLGVTRNIIKIHNDLRAMRFRGELSRMVGL 603
Query: 583 FVNEKQRCVYIASDGGRVCRP-LVIADKGISRIKEHHMKELLDGVRSFDDFLRE--GLIE 639
+N K +I +DGGR+ RP L + D K + E+LD V S+++FL + +IE
Sbjct: 604 VLNYKTAEFHIYTDGGRLIRPYLTVTDN-----KLNFKPEMLDEVNSWEEFLAKFPEVIE 658
Query: 640 YLDVNEENNALIAL-------------------------------YEGDATPDTTHIEIE 668
Y+D EE N ++A+ Y+ + TH EI
Sbjct: 659 YVDKEEEQNIMLAVFPQYIQDANRIMSKKPINSRDQLNKINRTNRYDDNVYVRYTHCEIH 718
Query: 669 PFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLL 728
P ILG+I+ IP+P HNQSPR +Q +QAMG + R D + Y+L +PQ PL+
Sbjct: 719 PCMILGLISSNIPFPDHNQSPRGIFQYNQARQAMGLYISDYRERTD-ISYILYHPQIPLV 777
Query: 729 TTRTIELVGYDKLGAGQNATVAVMSYSGY-DIEDAIVMNKSSLDRGFGRCIVVKKYTAIN 787
T+R + G AG+N+ VA+ SY+G + ED++V+N S++ +G+ R +KKY I
Sbjct: 778 TSRASKYTGTHIFPAGENSIVAIASYTGLMNQEDSLVINDSAIQKGYMRAQALKKYMEII 837
Query: 788 QKY-ANSTSDRILRPDRTGPGAER---MQILDDDGLAAPGEIIKPNDVYINKESPLETRG 843
+K A+S + ++PDR R L ++G A +I+ DV I +P
Sbjct: 838 KKNPASSQTSIFMKPDRNKVDNLRDANYDKLSEEGYAKVETVIRDGDVVIGVVNP----- 892
Query: 844 SIMSPTGQTDSR-YRSARQTYKG--PDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 900
PT + D + Y+ A YK P VD+V + +G IK IR R P +
Sbjct: 893 ---KPTAREDEKQYKDASSIYKSLIPGA----VDKVITEVNNDGYPIIKMRIRSERIPNV 945
Query: 901 GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 960
GDKFSSR GQKG G + D FS+ G+ PD+I+NP+ P RMT+G++IE L GK
Sbjct: 946 GDKFSSRAGQKGTIGYKAHRADMLFSKSGLIPDIIINPNCMPKRMTIGQLIECLLGKLCA 1005
Query: 961 SCGRFHYGSAF 971
G + + F
Sbjct: 1006 VKGVYGDATPF 1016
>sp|Q60181|RPOB1_METJA DNA-directed RNA polymerase subunit B' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoB1 PE=3 SV=1
Length = 636
Score = 351 bits (900), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 184/431 (42%), Positives = 264/431 (61%), Gaps = 12/431 (2%)
Query: 547 VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
+ NG ++G +P+ + +R+ RR G++ ++ +V NE+ ++I +D GR+ RPL++
Sbjct: 11 IYVNGKLVGTTDKPEELVNFIREKRRKGELPQYTTVAYNEESNDIHINTDAGRIVRPLIV 70
Query: 607 ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
+ G ++ + H+++L G +F D ++EG+IEYLD EE NA IAL E + T TH+E
Sbjct: 71 VENGKPKLTKEHIEKLKKGEITFSDLVKEGVIEYLDAEEEENAYIALSEEELTEKHTHLE 130
Query: 667 IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
I+P TILG+ AG+ PYP HN +PR T AMGKQ++G N R+D+ + L YPQ P
Sbjct: 131 IDPLTILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMSNIKWRLDTRGHYLHYPQVP 190
Query: 727 LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
++ T+ E++G+DK AGQN VA+MSY GY++EDAIV NKS++DRG GR + Y A
Sbjct: 191 IVRTKHQEILGFDKRPAGQNFVVAIMSYEGYNMEDAIVFNKSAIDRGLGRSTFFRTYDAC 250
Query: 787 NQKYANSTSDRILRPDRTGPG---AERMQILDDDGLAAPGEIIKPNDVYINKESP---LE 840
++Y DR PD+ G E + L++DG+ A +K DV + K SP LE
Sbjct: 251 ERRYPGGQMDRFEIPDKGVRGYRSEECYRYLEEDGIVAVESHVKGGDVIVGKTSPPRFLE 310
Query: 841 TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 900
T Q + R + + GE +D+V L K G+ +K +R R PEL
Sbjct: 311 EH----EITIQVKPQRRDSSVVVR--HGEEGYIDKVILTETKEGNRLVKVKVRDLRIPEL 364
Query: 901 GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 960
GDKF+SRHGQKGV G V QED PF+E GI PD+I+NPH PSRMTVG+++E+LGGK G
Sbjct: 365 GDKFASRHGQKGVMGLTVPQEDLPFTESGIVPDIIINPHAIPSRMTVGQLLEMLGGKVGA 424
Query: 961 SCGRFHYGSAF 971
GR G+ F
Sbjct: 425 LEGRRIDGTIF 435
>sp|Q9LK40|RPD2A_ARATH DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana
GN=NRPD2a PE=1 SV=1
Length = 1172
Score = 345 bits (885), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 287/1002 (28%), Positives = 478/1002 (47%), Gaps = 115/1002 (11%)
Query: 38 FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSI-------------FLRFKD 84
F GL+ L+S+NYF+ G++ + ++ ++ ++PS ++F +
Sbjct: 42 FFDKYGLISHQLNSYNYFIEHGLQNVFQSFGEML--VEPSFDVVKKKDNDWRYATVKFGE 99
Query: 85 VRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYV---------------QGSHT 129
V + +P+ D + P RL +MTY+A I VN++ Q ++
Sbjct: 100 VTVEKPTFFSDDKELEFLPWHARLQNMTYSARIKVNVQVEVFKNTVVKSDKFKTGQDNYV 159
Query: 130 EKTTME--KNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLL 187
EK ++ K D++IG IP+M++S C K + E + G+C D GGYF+IKG EKV +
Sbjct: 160 EKKILDVKKQDILIGSIPVMVKSILCKTSEKGK-ENCKKGDCAFDQGGYFVIKGAEKVFI 218
Query: 188 IQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQM---EKGKMY------LLLNQF 238
QEQ+ R+ I N +V+ +E +++ ++++ EK + Y L +
Sbjct: 219 AQEQMCTKRLWI-----SNSPWTVSFRSENKRNRFIVRLSENEKAEDYKRREKVLTVYFL 273
Query: 239 VKKIPIMVVMKAMGMESDQEVVQMV---GRDPRYSALLLPSIE---------ECANLDIY 286
+IP+ ++ A+G+ SD+E + ++ G D + L+ SI C N
Sbjct: 274 STEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAFRCGN---- 329
Query: 287 TQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLR 346
AL Y+E ++K + F PP A S+ + L P + + K ++ M++
Sbjct: 330 ---NALTYVEQQIKSTKF--PP------AESVDECLHLYLFP-GLQSLKKKARFLGYMVK 377
Query: 347 RMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSS 406
++ + K +++D NKR+EL+G+L+ E + ++ ++ + + K S
Sbjct: 378 CLLNSYAGKRKCENRDSFRNKRIELAGELL----EREIRVHLAHARRKMTRAMQK-HLSG 432
Query: 407 RFDL---SQFIVRDSITVGLERTLSTGNFDVKRFKMHR-KGMTQVLARLSFIGTLGHMTR 462
DL ++ IT GL R STG + KM R G+ L R + + TL + R
Sbjct: 433 DGDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRR 492
Query: 463 VSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISL 522
Q + KV R PS WG +C TP+GE CGLVKN++L+ V+T E + L
Sbjct: 493 TRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLESVVEKL 552
Query: 523 CYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSV 582
C G+E+L + L + V+ NG +G + F ++ RR ++ + +
Sbjct: 553 FAC-GMEELMDDTCTPLFGKHK--VLLNGDWVGLCADSESFVAELKSRRRQSELPREMEI 609
Query: 583 FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLD 642
++ V I +D GR+ RPL++ + +E + D + G+ E D
Sbjct: 610 KRDKDDNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQYPFDHLLDHGILELIGIEEEED 669
Query: 643 VNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG-KQA 701
N L E TH E++ +LGV ++P+ +H+ R YQ +QA
Sbjct: 670 CNTAWGIKQLLKEPKIY---THCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQA 726
Query: 702 MGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIED 761
+G + N R D+L L YPQ+PL T E + + L GQNA VAV + GY+ ED
Sbjct: 727 IGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQED 786
Query: 762 AIVMNKSSLDRGFGRCIVVKKYTA-INQKYANSTS--DRILRPDRTGPGAERMQILDDDG 818
+IVMNK+SL+RG R ++ Y A ++ K + D +++ +T ++ L+DDG
Sbjct: 787 SIVMNKASLERGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQFGKTHSKIGKVDSLEDDG 846
Query: 819 LAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVAL 878
G + D+ I + + +G A + K E +V +V L
Sbjct: 847 FPFIGANMSTGDIVIGR----------CTESG--------ADHSIKLKHTERGIVQKVVL 888
Query: 879 CSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNP 938
S+ G +R R P LGDKFSS HGQKGV G + +Q++FPF+ +GI PD+++NP
Sbjct: 889 SSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINP 948
Query: 939 HGFPSRMTVGKMIELLGGKAGVSCGRFHYGS--AFGEPSGHA 978
H FPSR T G+++E K G++C GS A+ + + HA
Sbjct: 949 HAFPSRQTPGQLLEAALSK-GIACPIQKEGSSAAYTKLTRHA 989
>sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoB1 PE=3 SV=1
Length = 603
Score = 340 bits (873), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 181/428 (42%), Positives = 254/428 (59%), Gaps = 6/428 (1%)
Query: 547 VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
+ NG ++G P+ F + MRK RR+G++ +++ + +YI +D GR RPL+I
Sbjct: 6 IYINGKLIGTCENPEEFVEEMRKKRRSGEVSPEMNITHYPENHEIYIFTDPGRARRPLII 65
Query: 607 ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
+ G + E H+++L G S+DD + G+IEYLD EE NA IA+ + + TH+E
Sbjct: 66 VEDGEPLLTEEHLEKLETGEMSWDDLIAAGIIEYLDAEEEENAYIAMSPDEINDEHTHLE 125
Query: 667 IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
I+P T+LG+ AG+IP+ +HN SPRNT + M KQA+G A N R D+ +LL +PQ P
Sbjct: 126 IDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNYDLRTDTRAHLLHHPQVP 185
Query: 727 LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
++ TR I++ GYD+ +GQN VAVMSY GY++EDA+++NK+SL+RG R + Y A
Sbjct: 186 IVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRSYEAA 245
Query: 787 NQKYANSTSDRILRPDRTGPG---AERMQILDDDGLAAPGEIIKPNDVYINKESPLETRG 843
++Y DR P++ G + LD+DG+ P + DV I K SP
Sbjct: 246 ERRYPGGQEDRFEIPEKGVRGYRSESDYRHLDEDGIINPEAEVSSGDVLIGKTSPPRFLE 305
Query: 844 SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 903
I G R R T + GE +VD V L G K +R R+PELGDK
Sbjct: 306 EI-DEFGTVAERRRETSVTVR--HGEKGIVDAVLLTETVEGSRLAKIRVREQRQPELGDK 362
Query: 904 FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 963
F+SRHGQKGV G IV QED PF+E GI PDLI+NPH PSRM+VG+++E+L GKA G
Sbjct: 363 FASRHGQKGVVGLIVSQEDMPFTEDGIVPDLIVNPHAIPSRMSVGQVLEMLAGKAACMEG 422
Query: 964 RFHYGSAF 971
R G+ F
Sbjct: 423 RRVDGTPF 430
>sp|P09845|RPOB1_METTW DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoB1 PE=3 SV=2
Length = 604
Score = 336 bits (862), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 180/433 (41%), Positives = 258/433 (59%), Gaps = 7/433 (1%)
Query: 543 NSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCR 602
N + NG ++G P+ F + +R RR+G++ +++ + +YI +D GR R
Sbjct: 2 NKTKIYINGKLIGTCDNPEEFVEEIRAKRRSGEVSHEMNITHYPENHEIYIFTDPGRARR 61
Query: 603 PLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDT 662
PL+I + G +KE H+++L G +DD + +G+IEYLD EE N IA+ + T +
Sbjct: 62 PLIIVEDGEPLLKEEHLEKLSSGEMEWDDLISQGIIEYLDAEEEENTYIAMSPEEVTEEH 121
Query: 663 THIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVY 722
TH+EI+P T+LG+ AG+IP+ +HN SPRNT + M KQA+G A N R D+ +LL +
Sbjct: 122 THLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNYNLRTDTRAHLLHH 181
Query: 723 PQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKK 782
PQ P++ TR I++ GYD+ +GQN VAVMSY GY++EDA+++NK+SL+RG R +
Sbjct: 182 PQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRS 241
Query: 783 YTAINQKYANSTSDRILRPDR--TGPGAER-MQILDDDGLAAPGEIIKPNDVYINKESPL 839
Y A ++Y DR P++ G +ER + LD+DG+ P + DV I K SP
Sbjct: 242 YEATERRYPGGQEDRFEIPEKGVRGYRSERDYRHLDEDGIINPETEVSSGDVLIGKTSPP 301
Query: 840 ETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPE 899
I G R R T + GE +VD V L G K +R R+PE
Sbjct: 302 RFLEEI-DEFGTVAERRRETSVTVR--HGEEGIVDAVLLTETVEGSRLAKIRVREQRQPE 358
Query: 900 -LGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 958
+GDKF+SRHGQKGV G IV QED PF+E G+ PDLI+NPH PSRM+VG+++E+L GKA
Sbjct: 359 FIGDKFASRHGQKGVVGLIVSQEDMPFTEDGVVPDLIVNPHAIPSRMSVGQVLEMLAGKA 418
Query: 959 GVSCGRFHYGSAF 971
GR G+ F
Sbjct: 419 ACMEGRRVDGTPF 431
>sp|P28365|RPA2_EUPOC DNA-directed RNA polymerase I subunit RPA2 OS=Euplotes
octocarinatus GN=RPA2 PE=3 SV=2
Length = 1166
Score = 336 bits (862), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 291/1009 (28%), Positives = 477/1009 (47%), Gaps = 143/1009 (14%)
Query: 42 RGLVKQHLDSFNYFVNTGIRKIVRAN---DRIVSGIDPS-----IFLRFKDVRIGQPSM- 92
+ + + H+DSF++ ++T + + D IV S + L + +GQPS+
Sbjct: 17 KNIARHHIDSFDFAMSTCLNRACEHMLPFDYIVPEESASCGFKKLTLWYDSFELGQPSLG 76
Query: 93 TVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCR 152
+D S L P CR MTY P+ I + ++ V +G IP M R
Sbjct: 77 EIDYDSHILYPSECRQRKMTYTIPLFATI----FKKFDDEMVDNFKVKLGDIPTMGRKKF 132
Query: 153 CVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK-------- 204
C L G + ELA+ GE L+ GGYFI+ G EKV+ + +N I K
Sbjct: 133 CNLKGLTKKELAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRSKFLERGKDF 192
Query: 205 --GNINASVTSSTETVKSKTVIQMEKGKMYLLL----NQFVKKIPIMVVMKAMGMESDQE 258
+ T ++ T+ + G + L L +F+ IPI++++KA+ +D++
Sbjct: 193 TDYGVQMRCVRDDFTAQTITLTYLSDGSVSLRLIYQKQEFL--IPIILILKALKNCTDRQ 250
Query: 259 VVQMVGRDPRYSALLLPSIEEC----ANLDIYT--QEKALEYLEGKVKRSTFGSPPNDRE 312
+ + + + + +E +L+IY Q KAL ++ + S +D +
Sbjct: 251 IYERIVKGNFNQRQISDRVEAILAVGKDLNIYDSDQSKALIGSRFRIVLAGITSETSDID 310
Query: 313 GRAFSILRDVFLA-NVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
D+FL+ ++ +H +++ K + +M+ ++ ++ N+ +D+ D V + + L
Sbjct: 311 AG------DLFLSKHICIHTDSYEAKFDTLILMIDKLYASVANEVELDNLDSVAMQDVLL 364
Query: 372 SGQL-VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSIT-------VGL 423
G L + +L E LF + ++ L+K + FD +F RD +T +GL
Sbjct: 365 GGHLYLQILSEKLFDCLHINLRAR----LNKELKRHNFDPMKF--RDVLTNQKINCGIGL 418
Query: 424 -----ERTLSTGNFDVKRFK---MHRKGMTQVLARLSFIGTLGHMTRVS-PQFEKSRKVS 474
E L+TGN + R M G + +L+ I L H + Q+ +K +
Sbjct: 419 IGKRMENFLATGNL-ISRTNLDLMQTSGFCIIGDKLNNIRFLSHFRSIHRGQYFAEQKTT 477
Query: 475 GPRALQPSQWGMLCPCDTPEGEACGLVKNLAL-MTHVTTDEEEGPLISLCYCLGVEDLEL 533
R L P WG +CP TP+G CGL+ ++++ + ++E++ + LG +
Sbjct: 478 SVRKLLPESWGFICPVHTPDGAPCGLLNHISMSCVPIGSEEKQIDIDKFRNILGELGMNS 537
Query: 534 LSGEELHNPNS--FLVIFNGLILGKHRRP--KCFADVMRKLR-----------RAGKIG- 577
+S + N ++ + VIF+G+ LG + + F + +R L+ R +I
Sbjct: 538 ISSDLCLNYHTGYYPVIFDGIHLGYVEKDIGESFVEGLRYLKCTQSQPDYAIPRTLEIAF 597
Query: 578 -EFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREG 636
F N + +++AS R RP +K H
Sbjct: 598 IPFSGYSRNLQWPGIFLASTPARFTRP----------VKNLHY----------------N 631
Query: 637 LIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCA 696
IE++ E+ N IA + D TP+TTH E++P IL ++A + + +NQSPRN YQC
Sbjct: 632 CIEWISPLEQMNLSIACTDEDITPETTHQELDPINILSIVASVGVFAEYNQSPRNMYQCQ 691
Query: 697 MGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSG 756
M KQ MG N R D+ +Y L++P RP++ TRT ++ +G NA VAV+SY+G
Sbjct: 692 MAKQTMGTPYHNHQFRTDNKIYRLLFPHRPIVKTRTQVDFDIEEYPSGTNAVVAVISYTG 751
Query: 757 YDIEDAIVMNKSSLDRGFGRCIVVKKYTA-INQKYANSTSDRILRP----------DRTG 805
YD+EDA+++NKSS +RGFG +V K YT +N+ +NS S R ++ +
Sbjct: 752 YDLEDAMIINKSSYERGFGHGVVYKSYTHDLNE--SNSQSTRGIKSSVRYKFLNNVSQKD 809
Query: 806 PGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKG 865
+++ +D DGL G + T+G D+ R A+ + K
Sbjct: 810 KSKIKLENIDPDGLPKIGSQL--------------TKGK--PELCIFDTLKRGAKLS-KF 852
Query: 866 PDGETCVVDRVALC--SDKNGD-LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQED 922
D E ++ V +C DKN D L I + IR++R P +GDKFSSRHGQKGV + Q D
Sbjct: 853 KDSEKARIETVRVCGNDDKNPDNLSIGYTIRYSRIPVIGDKFSSRHGQKGVLSVLWPQVD 912
Query: 923 FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 971
PF+E GI PDLI+NPH FPSRMT+G +I+ + K+G G F F
Sbjct: 913 MPFTENGITPDLIINPHAFPSRMTMGMLIQSMAAKSGSLRGEFKTVETF 961
>sp|P41557|RPOB1_METVS DNA-directed RNA polymerase subunit B' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoB1 PE=3 SV=2
Length = 611
Score = 335 bits (860), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 180/425 (42%), Positives = 258/425 (60%), Gaps = 13/425 (3%)
Query: 547 VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
V NG ++ + P+ +R RR+GK+ S+ NE+ ++I++DGGR RPLV+
Sbjct: 7 VYVNGKLIDTSKDPENLVKSLRIQRRSGKLSPNTSISFNEESNDIHISTDGGRAVRPLVV 66
Query: 607 ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
+ G S++ ++++ + +F+ ++ G+IE+LD EE NA IA+Y + T + TH+E
Sbjct: 67 VENGFSKLTNELLEKVNNNELTFEYLVKTGVIEFLDAEEEENARIAMYNDEITFENTHVE 126
Query: 667 IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
I+P ILG+ AG+ PYP HN +PR T AMGKQ++G N RMD+ +LL YPQ P
Sbjct: 127 IDPLVILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMANIKWRMDTRGHLLHYPQVP 186
Query: 727 LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
L+ T+ E++G+DK AGQN VAVMSY GY++EDA V+NK+SL+RG GR + Y +
Sbjct: 187 LVRTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFVINKASLERGLGRSTFFRSYESF 246
Query: 787 NQKYANSTSDRILRPDRTGPG---AERMQILDDDGLAAPGEIIKPNDVYINKESP---LE 840
++Y D+ P++ G E + L DDGL ++ DV + K SP LE
Sbjct: 247 EKRYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLIDLESEVRSGDVILGKTSPPRFLE 306
Query: 841 TRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPEL 900
+ T QT S+ R T + GE VVD V L K G+ K +R R PE
Sbjct: 307 EQ----EITLQTKSQRRDTSVTIR--HGEEGVVDLVILSETKEGNRLGKVRVRDLRVPEF 360
Query: 901 GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG- 959
GDKF+SRHGQKGV G +V QED PF+E G+ PDLI+NPH PSRMT+G+++E++GGK G
Sbjct: 361 GDKFASRHGQKGVIGLVVPQEDLPFTEDGVIPDLIINPHAIPSRMTIGQVLEMIGGKVGS 420
Query: 960 VSCGR 964
+ C R
Sbjct: 421 LECRR 425
>sp|O28392|RPOB1_ARCFU DNA-directed RNA polymerase subunit B' OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoB1 PE=4 SV=1
Length = 604
Score = 330 bits (846), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 186/445 (41%), Positives = 259/445 (58%), Gaps = 15/445 (3%)
Query: 547 VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
V NG ++G H + A+ +R+LRR G+I V+V V I +D GR RPL++
Sbjct: 6 VYINGALVGFHDNGEELANKIRELRRKGRISNQVNVVYYPDSNEVRINTDAGRARRPLIV 65
Query: 607 ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
G + H++++ G + +D +R+GLIEYLD EE NA +A+YE + TP+ TH+E
Sbjct: 66 VKDGKPLVTPEHIEKIKKGELTIEDLVRQGLIEYLDAEEEENAYVAVYEHELTPEHTHLE 125
Query: 667 IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
++P I+G+ G IPY HN SPRNT AM KQ++G N R D+ +L+ +PQ P
Sbjct: 126 LDPSLIVGICTGSIPYAEHNASPRNTMGAAMIKQSLGIPYSNLAWRTDTRGHLMQHPQVP 185
Query: 727 LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
++TT T + +D+ AGQN VAV+SY GY+IEDA++MNK S++RG GR + Y +
Sbjct: 186 IVTTDTQVEIKFDERPAGQNFVVAVLSYEGYNIEDALIMNKGSVERGLGRSFFYRTYESE 245
Query: 787 NQKYANSTSDRILRP--DRTG-PGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRG 843
+Y D+ P D +G GAE LD+DGL P + P+DV I + SP
Sbjct: 246 EMRYPGGQEDKFEIPGADISGFRGAEAYAHLDEDGLIFPETEVGPDDVLIGRTSPPRF-- 303
Query: 844 SIMSPT--GQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 901
+ PT G + + R T + E VVD V L + G K +R R PELG
Sbjct: 304 -LEEPTELGISPQKRRETSVTMR--SNEKGVVDAVFLMQSEGGSKLAKVRVRDLRIPELG 360
Query: 902 DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 961
DKF+SRHGQKGV G +V +ED PF+E GI PDLI+NPH PSRMTVG ++E++GGK G
Sbjct: 361 DKFASRHGQKGVVGLLVPEEDMPFTESGIVPDLIINPHAIPSRMTVGHVLEMIGGKVGSL 420
Query: 962 CGRFHYGSAFGEPSGHADTVESIRC 986
GR GS F H ++ E +R
Sbjct: 421 EGRRVDGSLF-----HGESEEDLRA 440
>sp|P0CX03|RPOB1_HALSA DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoB1 PE=3
SV=1
Length = 608
Score = 328 bits (840), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 173/428 (40%), Positives = 246/428 (57%), Gaps = 5/428 (1%)
Query: 547 VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
V NG ++G H P+ A+ +R+ RR G++ E V+V V ++ V + +D GR RPL++
Sbjct: 9 VYVNGSLVGTHENPEELAEQIREARRRGEVSEMVNVSVRDRTGEVIVNADAGRARRPLLV 68
Query: 607 ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
+ G + + ++ + +G F+D + G +E++D EE + L+ + E + T D TH+E
Sbjct: 69 VENGEPVVTQEEVEAVKNGDIDFEDLVEAGKVEFIDAEEEEDILVGVEEEELTTDHTHLE 128
Query: 667 IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
I+P I G+ AG+IPYP HN SPR T M KQ++G A N R D+ +LL YPQ+
Sbjct: 129 IDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQSLGLPAANYRIRPDTRQHLLHYPQKA 188
Query: 727 LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
++ T+T E +GYD AGQN VAVMSY G++IEDA+VMNK S++R R + Y
Sbjct: 189 MVNTQTTEQIGYDDRPAGQNFVVAVMSYEGFNIEDALVMNKGSVERALSRSHFFRTYEGE 248
Query: 787 NQKYANSTSDRILRPD---RTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRG 843
++Y DR P R G + LDDDGL P + + V + K SP
Sbjct: 249 ERRYPGGQEDRFEIPGDDVRGARGEDAYTHLDDDGLVNPETKVDDSSVLLGKTSPPRFLE 308
Query: 844 SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 903
G + + R T + GE VVD V L ++G K +R R PELGDK
Sbjct: 309 EPEDMGGLSPQKRRETSVTMR--SGEDGVVDTVTLMEGEDGSKLAKVSVRDERIPELGDK 366
Query: 904 FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 963
F+SRHGQKGV G + QED PF++ G+ PDL++NPH PSRMTVG ++E+LGGKAG G
Sbjct: 367 FASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKAGSLDG 426
Query: 964 RFHYGSAF 971
R G+ F
Sbjct: 427 RSVDGTPF 434
>sp|B0R8D5|RPOB1_HALS3 DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoB1 PE=1 SV=1
Length = 608
Score = 328 bits (840), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 173/428 (40%), Positives = 246/428 (57%), Gaps = 5/428 (1%)
Query: 547 VIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 606
V NG ++G H P+ A+ +R+ RR G++ E V+V V ++ V + +D GR RPL++
Sbjct: 9 VYVNGSLVGTHENPEELAEQIREARRRGEVSEMVNVSVRDRTGEVIVNADAGRARRPLLV 68
Query: 607 ADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
+ G + + ++ + +G F+D + G +E++D EE + L+ + E + T D TH+E
Sbjct: 69 VENGEPVVTQEEVEAVKNGDIDFEDLVEAGKVEFIDAEEEEDILVGVEEEELTTDHTHLE 128
Query: 667 IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRP 726
I+P I G+ AG+IPYP HN SPR T M KQ++G A N R D+ +LL YPQ+
Sbjct: 129 IDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQSLGLPAANYRIRPDTRQHLLHYPQKA 188
Query: 727 LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAI 786
++ T+T E +GYD AGQN VAVMSY G++IEDA+VMNK S++R R + Y
Sbjct: 189 MVNTQTTEQIGYDDRPAGQNFVVAVMSYEGFNIEDALVMNKGSVERALSRSHFFRTYEGE 248
Query: 787 NQKYANSTSDRILRPD---RTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRG 843
++Y DR P R G + LDDDGL P + + V + K SP
Sbjct: 249 ERRYPGGQEDRFEIPGDDVRGARGEDAYTHLDDDGLVNPETKVDDSSVLLGKTSPPRFLE 308
Query: 844 SIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDK 903
G + + R T + GE VVD V L ++G K +R R PELGDK
Sbjct: 309 EPEDMGGLSPQKRRETSVTMR--SGEDGVVDTVTLMEGEDGSKLAKVSVRDERIPELGDK 366
Query: 904 FSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 963
F+SRHGQKGV G + QED PF++ G+ PDL++NPH PSRMTVG ++E+LGGKAG G
Sbjct: 367 FASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGKAGSLDG 426
Query: 964 RFHYGSAF 971
R G+ F
Sbjct: 427 RSVDGTPF 434
>sp|Q9LV32|RPD2B_ARATH DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana
GN=NRPD2b PE=2 SV=1
Length = 1119
Score = 325 bits (833), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 276/960 (28%), Positives = 462/960 (48%), Gaps = 110/960 (11%)
Query: 38 FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGV 97
F + GL+ L+S+N+F+ G++ ++F F D+ + +PS V
Sbjct: 33 FFEEFGLISHQLNSYNFFIEHGLQ---------------NVFESFGDILV-EPSFDVIKK 76
Query: 98 SEKLNPHMCRLSDMTYAA---PILVNIEYV---QGSHTEKTTME--KNDVVIGRIPIMLR 149
+ D YA I++ + Q + EK ++ K D++IG IP+M++
Sbjct: 77 KD---------GDWRYATVFKKIVIKHDKFKTGQDEYVEKEILDVKKQDILIGSIPVMVK 127
Query: 150 SCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINA 209
S C K + E + G C D GGYF+IKG EKV + QEQ+ R+ I N
Sbjct: 128 SVLCKTSEKGK-ENCKKGNCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWI-----SNSPW 181
Query: 210 SVTSSTETVKSKTVIQM---EKGKMYLLLNQFVK------KIPIMVVMKAMGMESDQEVV 260
+V+ +ET +++ ++++ EK + Y ++ + + +IP+ ++ A+G+ SD+E +
Sbjct: 182 TVSFRSETKRNRFIVRLSENEKAEDYKIMEKVLTVYFLSTEIPVWLLFFALGVSSDKEAM 241
Query: 261 QMV---GRDPRYSALLLPSIEECANL--DIYTQEKALEYLEGKVKRSTFGSPPNDREGRA 315
++ G D + L+ SI E + AL Y+E ++K + F PP A
Sbjct: 242 DLIAFDGDDASITNSLIASIHEADAVCEAFRCGNNALTYVEHQIKSTKF--PP------A 293
Query: 316 FSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQL 375
S+ + L P + K ++ M++ ++ A K +++D NKR+EL+G+L
Sbjct: 294 ESVDDCLRLYLFPCLQG-LKKKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGEL 352
Query: 376 VSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDL---SQFIVRDSITVGLERTLSTGNF 432
+ E + ++ ++ + + K S DL ++ IT GL R STG +
Sbjct: 353 L----EREIRVHLAHARRKMTRAMQK-QLSGDGDLKPIEHYLDASVITNGLNRAFSTGAW 407
Query: 433 DVKRFKMHR-KGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCD 491
KM R G+ L R + + TL + R Q + KV R PS WG +C
Sbjct: 408 SHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTGKVGDARHPHPSHWGRVCFLS 467
Query: 492 TPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNG 551
TP+GE CGLVKN++L+ V+T E ++ + + G+E+L + L + V+ NG
Sbjct: 468 TPDGENCGLVKNMSLLGLVSTQGLES-VVEMLFTCGMEELMNDTSTPLCGKHK--VLLNG 524
Query: 552 LILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGI 611
+G + F ++ RR ++ + + ++ V I +D GR+ RPL++ + +
Sbjct: 525 DWVGLCADSESFVGELKSRRRQSELPLEMEIKRDKDDNEVRIFTDAGRLLRPLLVVE-NL 583
Query: 612 SRIKE-----HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIE 666
++K+ + K LLD G+ E D L E + TH E
Sbjct: 584 HKLKQDKPTQYPFKHLLDQGIL----ELIGIEEEEDCTTAWGIKQLLKE---PKNYTHCE 636
Query: 667 IEPFTILGVIAGLIPYPHHNQSPRNTYQCAMG-KQAMGNIAFNQLCRMDSLLYLLVYPQR 725
++ +LGV ++P+ +H+ R YQ +QA+G + N R D+L L YPQ+
Sbjct: 637 LDLSFLLGVSCAIVPFANHDHGKRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQK 696
Query: 726 PLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTA 785
PL T E + + L GQNA VAV + GY+ ED+IVMNK+SL+RG R ++ Y A
Sbjct: 697 PLFKTLASECLEKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKA 756
Query: 786 -INQKYANSTS--DRILRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETR 842
++ K + D +++ +T ++ L+DDG G + D+ I +
Sbjct: 757 EVDTKDSEKRKKMDELVQFGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGR------- 809
Query: 843 GSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGD 902
T+S A + K E +V +V L S+ G +R R P LGD
Sbjct: 810 --------CTES---GADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGD 858
Query: 903 KFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSC 962
KFSS HGQKGV G + +Q++FPF+ +GI PD+++NPH FPSR T G+++E K G++C
Sbjct: 859 KFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSK-GIAC 917
>sp|Q91F97|RPB2_IIV6 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-428L PE=3 SV=1
Length = 1193
Score = 318 bits (816), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 280/1032 (27%), Positives = 469/1032 (45%), Gaps = 125/1032 (12%)
Query: 30 DKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPS------------ 77
++ LL ++ + GLVK L++F++F+ I+ I+ I+ S
Sbjct: 24 NRLMLLKDYFQTSGLVKHQLETFDHFIFHDIKTIIDDEASIIFNGKRSLSSQIKNGAVEE 83
Query: 78 ---------IFLRFKDVRIGQPSMTVDGVSEK-LNPHMCRLSDMTYAAPILVNI-EYVQG 126
I L+F++V + +P++T D + + L P R +TY + + V++ EYV
Sbjct: 84 GYNRKESEKIMLKFENVFVAKPTITNDDTTVRPLYPAEARQKMITYDSFVFVDVLEYVLR 143
Query: 127 SHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVL 186
E + V I +IPIMLRS C LY E LGE DPGGYFII G E+VL
Sbjct: 144 DEEEILVNKHLRVQIAKIPIMLRSSTCNLYNCTPQERIELGEGIEDPGGYFIINGNERVL 203
Query: 187 LIQEQLSKNRVIIDTDKKGN-INASVTSSTETVKSKTVIQM-----------------EK 228
+ Q + + NR I +K + + S +E +IQ+ +
Sbjct: 204 IGQLRNAYNRSICFRNKFSEPLTCDMRSMSEETGHSVLIQLRLNDSPISQKRNLKKLDKN 263
Query: 229 GKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQ 288
G + L+++Q IPI V + + + + ++ ++G + L+ +EE ++ I+
Sbjct: 264 GTIDLIISQTKTPIPISFVFRVLKVATIDKLKFLIGDEEELDKYLIKIVEETSDGGIF-D 322
Query: 289 EKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVF--LANVPVHNNNFRPKCFYVAVMLR 346
+ +E + ++ F I +D+F L H K + M+R
Sbjct: 323 DMEIEISQEDDFNEENEESTEKKKITQF-IEQDMFPHLGVSSTH----EEKAILLGKMVR 377
Query: 347 RMV---EAMLNKD---------------------AMDDKDYVGNKRLELSGQLVSLLFED 382
+++ E +N + +D+D NKR+E +G L LF
Sbjct: 378 KLLLVNETSINANKFAQRANDETNKTNKTNKMYYTQEDRDNYSNKRVETAGVLCFELFRM 437
Query: 383 LFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRK 442
L+K I +++ + +R ++ IT GL + STGN+ V++ R
Sbjct: 438 LYKRFIKSN-------INQLEKRNRVEMDVISKNAFITTGLHFSFSTGNWGVQKNNYIRT 490
Query: 443 GMTQV-LARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 501
G+ Q+ ++SF ++ R K K + R + PS CP +TPEG+ G+
Sbjct: 491 GVAQIPQNKVSFGAFFSYLRRFVIPMGKEGKNTKIRQIHPSSIFFACPSETPEGQFVGIT 550
Query: 502 KNLALMTHVTTDEEEGPLISLCYCLG-----VEDLELLSGEELHNPNSFLVIFNGLILGK 556
N +++ V+ + + V ++ L ++ + S + + NG I G
Sbjct: 551 LNFSMLAEVSIRTSSVVIKEIIEASHQAFKHVHEISLEENKQFLSKLSIIFV-NGGICGL 609
Query: 557 HRRPKCFADVMRKLRRAGKIGEFVS-VFVNEKQRCVYIASDGGRVCRPLVIADKGISRIK 615
+P+ +R L+ + VS VF+ E + V+I+SD GR RP++ + IK
Sbjct: 610 TSKPQQLLSDVRDLKLKHCLKYDVSAVFIPELKE-VHISSDAGRFIRPVL----NLQSIK 664
Query: 616 EHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTT---HIEIEPFTI 672
+ SF + L G + Y D E + IA+ D + T +EI +
Sbjct: 665 TNGNVMW----NSFQNCLENGHVVYKDAYEIEQSQIAINLQDLSRYPTVYDSMEIHASCM 720
Query: 673 LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
LGV+A IP+ H QSPR YQ +M KQA+GNI + + + D+ ++ Y QRPL+TT+
Sbjct: 721 LGVMAAQIPFAEHTQSPRLCYQSSMAKQAIGNIPSHHV-KSDNTTRVMDYVQRPLVTTQI 779
Query: 733 IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
E+ ++ G NA VAV Y+G++ ED+I++NK+S+DRG + K T I ++
Sbjct: 780 AEMNRFNDFPNGLNAMVAVAIYTGFNQEDSIILNKASIDRGMFHVVTYK--TIIVEERKI 837
Query: 793 STSDRILRPDRTGPGAERMQILDDD------GLAAPGEIIKPNDVYINKESPLETRGSIM 846
+++I P + +L+D+ G+ +K NDV + G ++
Sbjct: 838 GVNEKICMPVASVRRMNNYSLLEDNPESPYFGVVKVKSFVKRNDVLV---------GKVI 888
Query: 847 SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSS 906
+ + +R + T E VDR+ S K G L K +I +RPE+GDKF S
Sbjct: 889 TKISKDGTRQETDHSTIVSI-SEEGKVDRIIRTS-KKGILMFKIVIAQQKRPEIGDKFCS 946
Query: 907 RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR-- 964
QKG G I+++ D PF E G PD+I+NPH PSRMT+ +++ + GK C +
Sbjct: 947 AMAQKGTVGMILEEVDMPFMEDGSIPDMIINPHCLPSRMTINQIMASIMGKT--CCAKNE 1004
Query: 965 -FHYGSAFGEPS 975
F S F E S
Sbjct: 1005 TFGDASPFQESS 1016
>sp|Q5REE8|RPA2_PONAB DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii
GN=POLR1B PE=2 SV=1
Length = 1136
Score = 315 bits (806), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 279/973 (28%), Positives = 436/973 (44%), Gaps = 105/973 (10%)
Query: 44 LVKQHLDSFNYFVNTGIRKIVRANDRIVSGI-DPSIFLRFKDVRIGQPSMTVDGVSEKLN 102
L + H++SFNY V+ G+ V+A D I D I P++ + ++++
Sbjct: 38 LTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICKEVS 97
Query: 103 --PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDE 160
P CR TY + +I + ++ + +G +PIM++S C LY
Sbjct: 98 VYPAECRGRRCTYRGKLTADISWAVNGISKGIIKQ----FLGYVPIMVKSKLCNLYNLPP 153
Query: 161 AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN----------INAS 210
L E + GGYFII G EKV+ + +N I K ++
Sbjct: 154 QALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTHYGVSMH 213
Query: 211 VTSSTETVKSKTVIQMEKGKMYLLLNQFVKK----IPIMVVMKAMGMESDQEVVQMVGRD 266
+ + + +E G ++LN +K +P+ +KA+ SD ++ Q + +
Sbjct: 214 CVREEHSAVNMNLHYLENGT--VMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKG 271
Query: 267 PRYSALLLPSIEECANLDI----YTQEKALEYLEGKVKRSTFGSP---PNDREGRAFSIL 319
+ L S+ + + + TQ++ L YL G+ R P PN++
Sbjct: 272 KEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYL-GECFRVKLNVPDWYPNEQAAE----- 325
Query: 320 RDVFLAN--VPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLV 376
FL N + +H + K FY+ ++ R + A+ + M+D D + N+ + GQL
Sbjct: 326 ---FLFNQCICIHLKSNTEK-FYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLF 381
Query: 377 SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDV 434
+ ++ + + ++ D K + S D + F + +T E +TGN
Sbjct: 382 LMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRS 441
Query: 435 KRFK--MHRKGMTQVLARLSFIGTLGHMTRV--SPQFEKSRKVSGPRALQPSQWGMLCPC 490
K + G+ V +L+FI L H V F K R + R L P WG LCP
Sbjct: 442 KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTT-VRRLLPESWGFLCPV 500
Query: 491 DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC-LGVEDLELLSGEELHNPNSFLVIF 549
TP+GE CGL+ +L + V T I C LGV ++ + V+
Sbjct: 501 HTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPID--GAPHRSYSECYPVLL 558
Query: 550 NGLILG---KHRRPKCFADVMR--KLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
+G+++G K P AD +R K+ R +I + V V I G P
Sbjct: 559 DGVMVGWVDKELAPG-IADSLRHFKVLREKRIPPWTEV--------VLIPMTGKPSLYPG 609
Query: 605 VIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD-TT 663
+ R+ VR + L G E + E+ +A++E + TT
Sbjct: 610 LFLFTTPCRL-----------VRPVQN-LELGKEELIGTMEQIFMNVAIFEDEVFAGVTT 657
Query: 664 HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYP 723
H E+ P ++L VIA IP+ HNQSPRN YQC MGKQ MG R D+ LY L P
Sbjct: 658 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717
Query: 724 QRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-K 782
Q PL+ + D G NA VAV+SY+GYD+EDA+++NK+S +RGF V K +
Sbjct: 718 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777
Query: 783 YTAINQKYANSTSDRILRPDRTGPGAER-MQILDDDGLAAPGEIIKPNDVYINKESPLET 841
+ +++K S + PG R +Q LDDDGL G ++ D Y +
Sbjct: 778 FIDLSEKIKQGDSSLVF---GMKPGDPRILQKLDDDGLPFIGAKLQYGDPYYS------- 827
Query: 842 RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD---LCIKFLIRHTRRP 898
+ TG++ Y ++ E CVVD + +CS+ G C+ +R R P
Sbjct: 828 --YLNLNTGESFVMYYKSK--------ENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNP 877
Query: 899 ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 958
+GDKF+SRHGQKG+ + ED PF+E G+ PD++ NPHGFPSRMT+G +IE + GK+
Sbjct: 878 TIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKS 937
Query: 959 GVSCGRFHYGSAF 971
G H + F
Sbjct: 938 AALHGLCHDATPF 950
>sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens
GN=POLR1B PE=1 SV=2
Length = 1135
Score = 312 bits (799), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 280/973 (28%), Positives = 435/973 (44%), Gaps = 105/973 (10%)
Query: 44 LVKQHLDSFNYFVNTGIRKIVRANDRIVSGI-DPSIFLRFKDVRIGQPSMTVDGVSEKLN 102
L + H++SFNY V+ G+ V+A D I D I P++ + ++ N
Sbjct: 38 LTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICKEAN 97
Query: 103 --PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDE 160
P CR TY + +I + ++ + +G +PIM++S C L
Sbjct: 98 VYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQ----FLGYVPIMVKSKLCNLRNLPP 153
Query: 161 AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN----------INAS 210
L E + GGYFII G EKV+ + +N I K ++
Sbjct: 154 QALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMH 213
Query: 211 VTSSTETVKSKTVIQMEKGKMYLLLNQFVKK----IPIMVVMKAMGMESDQEVVQMVGRD 266
+ + + +E G ++LN +K +P+ +KA+ SD ++ Q + +
Sbjct: 214 CVREEHSAVNMNLHYLENGT--VMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKG 271
Query: 267 PRYSALLLPSIEECANLDI----YTQEKALEYLEGKVKRSTFGSP---PNDREGRAFSIL 319
+ L S+ + + + TQ++ L YL G+ R P PN++
Sbjct: 272 KEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYL-GECFRVKLNVPDWYPNEQAAE----- 325
Query: 320 RDVFLAN--VPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLV 376
FL N + +H + K FY+ ++ R + A+ + M+D D + N+ + GQL
Sbjct: 326 ---FLFNQCICIHLKSNTEK-FYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLF 381
Query: 377 SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDV 434
+ ++ + + ++ D K S S D + F + +T E +TGN
Sbjct: 382 LMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRS 441
Query: 435 KRFK--MHRKGMTQVLARLSFIGTLGHMTRV--SPQFEKSRKVSGPRALQPSQWGMLCPC 490
K + G+ V +L+FI L H V F K R + R L P WG LCP
Sbjct: 442 KTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTT-VRRLLPESWGFLCPV 500
Query: 491 DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC-LGVEDLELLSGEELHNPNSFLVIF 549
TP+GE CGL+ +L + V T I C LGV ++ + V+
Sbjct: 501 HTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPID--GAPHRSYSECYPVLL 558
Query: 550 NGLILG---KHRRPKCFADVMR--KLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPL 604
+G+++G K P AD +R K+ R +I ++ V V I G P
Sbjct: 559 DGVMVGWVDKDLAPG-IADSLRHFKVLREKRIPPWMEV--------VLIPMTGKPSLYPG 609
Query: 605 VIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD-TT 663
+ R+ VR + L G E + E+ +A++E + TT
Sbjct: 610 LFLFTTPCRL-----------VRPVQN-LALGKEELIGTMEQIFMNVAIFEDEVFAGVTT 657
Query: 664 HIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYP 723
H E+ P ++L VIA IP+ HNQSPRN YQC MGKQ MG R D+ LY L P
Sbjct: 658 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717
Query: 724 QRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-K 782
Q PL+ + D G NA VAV+SY+GYD+EDA+++NK+S +RGF V K +
Sbjct: 718 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777
Query: 783 YTAINQKYANSTSDRILRPDRTGPGAER-MQILDDDGLAAPGEIIKPNDVYINKESPLET 841
+ +++K S + PG R +Q LDDDGL G ++ D Y +
Sbjct: 778 FIDLSEKIKQGDSSLVF---GIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYS------- 827
Query: 842 RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD---LCIKFLIRHTRRP 898
+ TG++ Y ++ E CVVD + +CS+ G C+ +R R P
Sbjct: 828 --YLNLNTGESFVMYYKSK--------ENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNP 877
Query: 899 ELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA 958
+GDKF+SRHGQKG+ + ED PF+E G+ PD++ NPHGFPSRMT+G +IE + GK+
Sbjct: 878 TIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKS 937
Query: 959 GVSCGRFHYGSAF 971
G H + F
Sbjct: 938 AALHGLCHDATPF 950
>sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus
GN=Polr1b PE=2 SV=2
Length = 1135
Score = 312 bits (799), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 277/985 (28%), Positives = 441/985 (44%), Gaps = 123/985 (12%)
Query: 41 VRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGI-DPSIFLRFKDVRIGQPSMTVDGVSE 99
++ L + H+DSFNY G+ V+A D I L D I PS+ + +
Sbjct: 35 LQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPSVPKGTICK 94
Query: 100 KLN--PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYG 157
LN P CR TY + +I + + + +G +PIM++S C LY
Sbjct: 95 DLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQ----FLGYVPIMVKSKLCNLYN 150
Query: 158 KDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN----------I 207
L E + GGYFII G EKV+ + +N I K +
Sbjct: 151 LPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGV 210
Query: 208 NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK----IPIMVVMKAMGMESDQEVVQMV 263
+ + + + +E G ++LN +K +P+ +KA+ SD ++ Q +
Sbjct: 211 SMRCVREEHSAVNMNLHYVENGT--VMLNFIYRKELFFLPLGFALKALVSFSDYQIFQEL 268
Query: 264 GRDPRYSALLLPSIEECANLDI----YTQEKALEYLEGKVKRSTFGSP---PNDREGRAF 316
+ + S+ + + I ++Q++ L YL G+ R P PN
Sbjct: 269 IKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQVLNYL-GECFRVKLSLPDWYPNVEAAE-- 325
Query: 317 SILRDVFLAN--VPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSG 373
FL N + +H + K FY+ ++ R + A+ + MDD D + N+ + G
Sbjct: 326 ------FLLNQCICIHLQSNTDK-FYLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPG 378
Query: 374 QLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQ------FIVRDSITVGLERTL 427
QL + ++ + + ++ I+L K ++ + ++ F + +T E L
Sbjct: 379 QLFLMFLKEKMENWLVSIK----IVLDKRAQKANVSINNENLMKIFSMGTELTRPFEYLL 434
Query: 428 STGNFDVKRFK--MHRKGMTQVLARLSFIGTLGHMTRV--SPQFEKSRKVSGPRALQPSQ 483
+TGN K + G+ V +L+F+ L H V F K R + R L P
Sbjct: 435 ATGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTT-VRRLLPES 493
Query: 484 WGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC-LGVEDLELLSGEELHNP 542
WG LCP TP+G CGL+ +L + V T I C LGV ++ +
Sbjct: 494 WGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVDTAPCRPYSD- 552
Query: 543 NSFLVIFNGLILG---KHRRPKCFADVMRKLR--RAGKIGEFVSVFV------NEKQRCV 591
+ V+ +G+++G K P+ AD +R+ + R +I ++ V + +
Sbjct: 553 -CYPVLLDGVMVGWVDKDLAPEV-ADTLRRFKVLREKRIPPWMEVALIPMTGKPSLYPGL 610
Query: 592 YIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALI 651
++ + R+ RP+ + G + M++L V F+D + G+
Sbjct: 611 FLFTTPCRLVRPVQNLELGREELI-GTMEQLFMNVAIFEDEVFGGI-------------- 655
Query: 652 ALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
+TH E+ P ++L VIA IP+ HNQSPRN YQC MGKQ MG
Sbjct: 656 ----------STHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQN 705
Query: 712 RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
R D+ LY L PQ PL+ + D G NA VAV+SY+GYD+EDA+++NK+S +
Sbjct: 706 RSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWE 765
Query: 772 RGFGRCIVVK-KYTAINQKYANSTSDRILRPDRTGPGAER-MQILDDDGLAAPGEIIKPN 829
RGF V K ++ +++K+ + + PG R MQ LDDDGL G ++
Sbjct: 766 RGFAHGSVYKSEFIDLSEKFKQGEDNLVF---GVKPGDPRVMQKLDDDGLPFIGAKLEYG 822
Query: 830 DVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD---L 886
D Y + + TG+ Y ++ E CVVD + +CS+ G
Sbjct: 823 DPYYS---------YLNLNTGEGFVVYYKSK--------ENCVVDNIKVCSNDMGSGKFK 865
Query: 887 CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMT 946
CI +R R P +GDKF+SRHGQKG+ + ED PF+E G+ PD++ NPHGFPSRMT
Sbjct: 866 CICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMT 925
Query: 947 VGKMIELLGGKAGVSCGRFHYGSAF 971
+G +IE + GK+ G H + F
Sbjct: 926 IGMLIESMAGKSAALHGLCHDATPF 950
>sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium
discoideum GN=polr1b PE=3 SV=1
Length = 1130
Score = 310 bits (794), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 268/1016 (26%), Positives = 464/1016 (45%), Gaps = 153/1016 (15%)
Query: 40 KVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIF-LRFKDVRIGQPSMTVDGVS 98
+++ L++ H+DSF++F + GI +++ ++ + + + + +RF D+++ +P+ +
Sbjct: 4 ELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQYKIRFTDLKLSRPTRNIVEKE 63
Query: 99 EKLNPHMCRLSDMTYAAPILVNI---------EYVQGSHTEKTTMEKN---DVVIGRIPI 146
KL P+ R + TY AP I E G+ + E +V +GR+PI
Sbjct: 64 IKLYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVDLGRLPI 123
Query: 147 MLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR-VIIDTDKKG 205
M++S C L G +L E L+ GGYFI+ G EKV+ + N V +
Sbjct: 124 MVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALHRKAWT 183
Query: 206 NINASVTSSTETVK---------SKTVIQMEKGKMYLLLNQFVKK-----IPIMVVMKAM 251
N T + T++ + + + G+ L +F+ + +P +++KA+
Sbjct: 184 NRGPGYTKNGITIRCVRPDRSSITNNLHYINDGQTTL---RFLYRRQEFFLPATLLLKAL 240
Query: 252 GMESDQEVVQMVGRDPRYSALLLPSIE----ECANLDIYTQEKALEYLEGKVK-RSTFGS 306
+++E+ + + + + L +E E +I TQE+ L+Y+ + + R+ F
Sbjct: 241 KDTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNINTQEEVLDYIGSRFRARTQF-- 298
Query: 307 PP---NDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDY 363
PP N + GR F I + VF VH N+ K + +M++++ + K D+ D
Sbjct: 299 PPSFSNIKIGRWF-INQFVF-----VHLPNYNDKYNLLILMIQKLYAMVGGKCGTDNIDS 352
Query: 364 VGNKRLELSGQLVSLL-------------------FEDLFKT---MISEVQKTVDIILSK 401
+ + L+G + ++ FED K+ + ++K +D
Sbjct: 353 PAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKLPDALKKVLDKNFKI 412
Query: 402 PSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMT 461
R S F L+ +R S + L++T G + +L+F+ + H
Sbjct: 413 ADRFSYF-LATGNLRSSSGIDLQQT---------------SGFCVIADKLNFLRFISHFR 456
Query: 462 RVS-PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI 520
+ F + K + R L P WG CP TP+G CGL+ +L+ VT D + P +
Sbjct: 457 SIHRGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTV 516
Query: 521 --------SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRR 572
S G+ ++++S ++ + +G +LGK PK ++++ LR
Sbjct: 517 QKAQTLLPSFLAAHGMLPIDMVS---VYQHQYLTITLDGRVLGK-IEPKAGEEMVKMLRY 572
Query: 573 AGKIGEFVSV-------------FVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHM 619
+G S+ N + + + + G R RP+V
Sbjct: 573 LRSMGNEPSIPKTMEISYAPPTNVENGQYSGISLFTTGARFMRPVVN------------- 619
Query: 620 KELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAG 678
L G E + E+ IA+ + TTHIE P + ++A
Sbjct: 620 -------------LTSGQNELIGPQEQLYMEIAVVPHEVIKGVTTHIETSPTAMFSLLAN 666
Query: 679 LIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGY 738
L P+ +NQSPRN YQC M KQ MG + R D+ LY + Q+P++ T+
Sbjct: 667 LTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRC 726
Query: 739 DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANSTSDR 797
+ G NA +AV+S +GYD+EDA+++NKS+ +RGFG V K +Y ++Q + +
Sbjct: 727 NDYPHGCNAVIAVISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYIDLDQGLSRFEQKK 786
Query: 798 IL--RPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSR 855
RP+ E + +D DGL G +IKP + Y P + R G+ ++
Sbjct: 787 TFFGRPNTVV--DELDKFIDTDGLPFVGRLIKPGEPYYTYIRPSDGRQVTKDYKGKEEAY 844
Query: 856 YRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCG 915
R + GP+G T ++ ++C+K +R R P +GDKFSSRHGQKGV
Sbjct: 845 IEDVRIIF-GPNGATRDPSKI-------NNICVK--LRFNRNPVIGDKFSSRHGQKGVLS 894
Query: 916 TIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 971
+ + + PF+E G+ PD+I+NP+ FPSRMT+G ++E+L GKAG G+F +AF
Sbjct: 895 QLWPEINMPFTESGMKPDVIINPNAFPSRMTIGMLVEILAGKAGAIHGKFQDATAF 950
>sp|Q9P7X8|RPA2_SCHPO Probable DNA-directed RNA polymerase I subunit RPA2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpa2 PE=3 SV=2
Length = 1174
Score = 309 bits (792), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 290/1003 (28%), Positives = 451/1003 (44%), Gaps = 140/1003 (13%)
Query: 38 FLKVRGLVKQHLDSFNYFVNTGIRKIVR-------ANDRIVS------GIDPSIFLRFKD 84
F ++ VK H+DSFN N G+ A D I I R +
Sbjct: 22 FPDLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAFDSITQEEGGALKFGNKISFRVDE 81
Query: 85 VRIGQPSMTV---DGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVI 141
V+I +P ++ ++ K+ P R TY + +++ + ++ M + +
Sbjct: 82 VQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGGPRQSEMRE----V 137
Query: 142 GRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKV--LLIQEQLSKNRVII 199
G IPIM+RS RC L G AEL E + GGYFI+ G EK+ +LI + + II
Sbjct: 138 GMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRNHPTAII 197
Query: 200 DTD--KKGNINASVTSSTETVK------SKTVIQMEKG----KMYLLLNQFVKKIPIMVV 247
+G + S V+ + T+ + G + + N+++ IP M++
Sbjct: 198 RPSFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLNNGVTMFRFHWRKNEYL--IPSMMI 255
Query: 248 MKAMGMESDQEVVQ-MVGRDPRYSALLLPSIE----ECANLDIYTQEKALEYLEGKVKRS 302
+KA+ SD+E+ + +VG+D + L +E + +Y+Q + L+YL K R
Sbjct: 256 LKALLETSDKEIFEGIVGKDLG-NTFLTDRVELMLRAYKSYGLYSQTETLQYLGSKF-RV 313
Query: 303 TFGSPPN--DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDD 360
G + D E F +L+ V L ++ + FR F M+R++ + + D+
Sbjct: 314 VLGVAEDLTDVEVGRF-LLQKVVLVHLREAKDKFRLLLF----MIRKLYALVAGECCADN 368
Query: 361 KDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR---- 416
D ++ + L G L + ++ + ++ ++ +++ + + + F +++ R
Sbjct: 369 PDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDFSDRKYLTRVFSK 428
Query: 417 --DSITVGLERTLSTGNF--DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS-PQFEKSR 471
+ I L+ LSTGN + G T V +L+F L H V F
Sbjct: 429 INNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAEL 488
Query: 472 KVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI-SLCYCLGVED 530
K + R L P WG +CP TP+G CGL+ +LA + T + I SL LGV+
Sbjct: 489 KTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTHPSDVSQIPSLLLSLGVDP 548
Query: 531 LELLSGEELHNPNSFLVIFNGLILG--KHRRPKCFADVMRKLR-------RAGKIGE--- 578
++ H V +G I+G ++ K ADV+R ++ R G E
Sbjct: 549 PSVVG----HESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAK 604
Query: 579 --------FVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFD 630
+V N + +Y+ S+ R+ RP+ +H LD + F+
Sbjct: 605 VPLDLEIGYVPPSHNGQYPGLYLFSNPARMVRPV-----------KHISTGELDMLGPFE 653
Query: 631 DFLREGLIEYLDVNEENNALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSP 689
Y+D IA + + P +TH+E P +L ++A + P+ NQSP
Sbjct: 654 QV-------YMD--------IACFPKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSP 698
Query: 690 RNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATV 749
RN YQC MGKQ MG R D+ LY L Q P++ + G D G NA V
Sbjct: 699 RNMYQCQMGKQTMGTPGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVV 758
Query: 750 AVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGA- 808
AV+SY+GYD+EDA+++NKS+ +RGFG V K + + + ++ PG+
Sbjct: 759 AVISYTGYDMEDAMILNKSAHERGFGYGTVYKG-ESFDLSQKRRRGEPVVHHFGFAPGST 817
Query: 809 ---ERMQILDDDGLAAPGEIIKPND--VYINKESPLETRGSIMSPTGQTDSRYRSARQTY 863
E +Q LD DGL G ++ D V ES TGQ + +TY
Sbjct: 818 PRREWLQKLDADGLPFIGIKLEDGDPIVAYYDES-----------TGQ------NFIETY 860
Query: 864 KGPDGETCVVDRVALCSDKNGDL-C--IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQ 920
G E VD V L + GD C I +R TR P +GDKFSSRHGQKG+C
Sbjct: 861 HGT--EPGFVDEVRLLGNDVGDSECQQIHVKLRITRSPIIGDKFSSRHGQKGICSQKWPT 918
Query: 921 EDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 963
D PF+E G+ PD+I+NPH FPSRMT+G IE L GKAG G
Sbjct: 919 VDMPFTESGMQPDIIINPHAFPSRMTIGMFIESLAGKAGACHG 961
>sp|O54888|RPA2_RAT DNA-directed RNA polymerase I subunit RPA2 OS=Rattus norvegicus
GN=Polr1b PE=1 SV=1
Length = 1135
Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 277/978 (28%), Positives = 431/978 (44%), Gaps = 109/978 (11%)
Query: 41 VRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGI-DPSIFLRFKDVRIGQPSMTVDGVSE 99
++ L + H+DSFNY V G+ V+A D I L D I P++ + +
Sbjct: 35 LQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFAFKDERISLTIVDAAISPPAVPKGTICK 94
Query: 100 KLN--PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYG 157
+LN P CR TY + +I + + + +G +PIM++S C LY
Sbjct: 95 ELNIYPAECRGRRSTYRGKLTADISWAVNGVPKGIIKQ----FLGXVPIMVKSKLCNLYN 150
Query: 158 KDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN----------I 207
L E + GGYFII G EKV+ + +N I K +
Sbjct: 151 LPPQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKSRGLGYTQFGV 210
Query: 208 NASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK----IPIMVVMKAMGMESDQEVVQMV 263
+ + + + +E G ++LN +K +P+ +KA+ SD ++ Q +
Sbjct: 211 SIHCVREEHSAVNMNLHYVENGT--VMLNFIYRKELFFLPLGFALKALVSFSDYQIFQEL 268
Query: 264 GRDPRYSALLLPSIEECANLDI----YTQEKALEYL--EGKVKRSTFGSPPNDREGRAFS 317
+ + S+ + + + +TQ++ L+YL +VK S PN E F
Sbjct: 269 IKGKEEDSFFKNSVSQMLRIVMEEGCHTQKQVLDYLGERFRVKLSLPDWYPN-AEAAEF- 326
Query: 318 ILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK-DYVGNKRLELSGQLV 376
+F + +H + K FY+ ++ R + A+ + M+D D + N+ + GQL
Sbjct: 327 ----LFNQCICIHLKSNTDK-FYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLF 381
Query: 377 SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDV 434
+ ++ + + ++ +D K + S + + F + +T E L+TGN
Sbjct: 382 LMFLKEKMENWLLSIKIALDKRAQKTNVSINNENLMKIFSMGTELTRPFEYLLATGNLRS 441
Query: 435 KRFK--MHRKGMTQVLARLSFIGTLGHMTRV--SPQFEKSRKVSGPRALQPSQWGMLCPC 490
K M G+ V +L+FI L H V F K R + R L P WG LCP
Sbjct: 442 KTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTT-VRKLLPESWGFLCPV 500
Query: 491 DTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYC-LGVEDLELLSGEELHNPNSFLVIF 549
TP+G CGL+ +L + V T I C LGV ++ + + V+
Sbjct: 501 HTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVDAAPCRPYSD--CYPVLL 558
Query: 550 NGLILG---KHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGG------RV 600
+G+++G K P+ AD +R+ + V ++RC + DGG R
Sbjct: 559 DGVMVGWVDKELAPEV-ADTLRRFK------------VLRERRCSSL--DGGGPDSHDRK 603
Query: 601 CRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIA--LYEGDA 658
+P+ A + HH + + R Y E+ L +
Sbjct: 604 AKPVPRA------VPLHHSLQAGEACAEPGAGQRRARWNYGAALHEHCHLRGRGFWWSFH 657
Query: 659 TPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLY 718
TP P VIA IP+ HNQSPRN YQC MGKQ MG R D+ LY
Sbjct: 658 TPGAL-----PSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLY 712
Query: 719 LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 778
L PQ PL+ + D G NA VAV+SY+GYD+EDA+++NK+S +RGF
Sbjct: 713 RLQTPQSPLVRPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772
Query: 779 VVK-KYTAINQKYANSTSDRILRPDRTGPGAER-MQILDDDGLAAPGEIIKPNDVYINKE 836
V K ++ +++K+ + PG R MQ LD+DGL G ++ D Y
Sbjct: 773 VYKSEFIDLSEKFKQGDDSLVF---GVKPGDPRVMQKLDNDGLPFIGAKLEFGDPYY--- 826
Query: 837 SPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD---LCIKFLIR 893
G + TG+ Y ++ E CVVD + +CS+ G C+ +R
Sbjct: 827 ------GYLNLNTGEGFVVYYKSK--------ENCVVDNIKVCSNDTGSGKFKCVCVTVR 872
Query: 894 HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIEL 953
R P +GDKF+SRHGQKG+ + ED PF+E G+ PD++ NPHGFPSRMT+G +IE
Sbjct: 873 VPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIES 932
Query: 954 LGGKAGVSCGRFHYGSAF 971
+ GK+ G H + F
Sbjct: 933 MAGKSAALHGLCHDATPF 950
>sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I subunit RPA2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=acr-2 PE=1 SV=2
Length = 1234
Score = 296 bits (757), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 277/1010 (27%), Positives = 455/1010 (45%), Gaps = 144/1010 (14%)
Query: 41 VRGLVKQHLDSFNYF--------------VNTGIRKIVRANDRIVSGIDPSIFLRFKDVR 86
++ V H++SFN G + + ++R + +R+K +
Sbjct: 39 LQAAVDPHIESFNALFRDDGKPSLLDHALAEIGTKTFLDGDERADPQGKNKLTIRYKSIE 98
Query: 87 IGQ---PSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEY-VQGSHTEKTTMEKNDVVIG 142
+ + P + ++ P CR ++Y + EY + + E +G
Sbjct: 99 LQKSQVPPTNRWAKNREIFPAECRERHVSYRGKLSATFEYRINDGEPHEFVRE-----LG 153
Query: 143 RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR---VII 199
++PIM++S +C L A+L E + GGYFI+ G EK LI+ L R + I
Sbjct: 154 QMPIMVKSNKCHLQNNSPAQLVARKEESEELGGYFIVNGIEK--LIRMLLVNRRNFPLAI 211
Query: 200 DTDKKGNINASVTS---------STETVKSKTVIQMEKGKMYLLL----NQFVKKIPIMV 246
N AS T ET ++ + + G + N+++ IP+M+
Sbjct: 212 VRPSFQNRGASYTPYGIIMRSVRPDETSQTNVLHYLSDGNVTFRFSWRKNEYL--IPVMM 269
Query: 247 VMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANL--------DIYTQEKALEYLEGK 298
+MKA+ +D+E+ + + P+ + + + L +Y++ + YL G+
Sbjct: 270 IMKALVETNDREIFEGLVGPPQSKGVANTFLTDRVELLLRTYKKYGLYSKTQTRAYL-GQ 328
Query: 299 VKRSTFGSPP--NDRE-GRAFSILRDVFLANVPVHNNNFRPKC--FYVAVMLRRMVEAML 353
R G P +D E G F LR + L ++ + + F + + + R + A++
Sbjct: 329 KFRVVLGVPDTMSDYEVGTEF--LRKIVLVHLGSQDVTEQQDADKFNMLLFMCRKLYALV 386
Query: 354 NKD-AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTV--DIILSKPSRSSRFD- 409
D A+D+ D V N+ + L G L + ++ + +++ + D + P+ S + D
Sbjct: 387 AGDCAVDNPDAVQNQEILLGGFLYGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQSDT 446
Query: 410 -LSQFIV------RDSITVGLERTLSTGNF------DVKRFKMHRKGMTQVLARLSFIGT 456
L F + ++I LE LSTGN D+++ G T V +L+F+
Sbjct: 447 FLKDFPIAIFRRANENIGQSLEYFLSTGNLVSPSGLDLQQVS----GFTVVAEKLNFLRF 502
Query: 457 LGHMTRVS-PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEE 515
+ H V F K + R L P WG LCP TP+G CGL+ +LA + T+
Sbjct: 503 ISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTESV 562
Query: 516 EGPLIS-LCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKC--FADVMRKLRR 572
+ IS L + LGV ++ + E S +V+ +G I+G +C A+ +R +
Sbjct: 563 DASTISRLAFELGVVNISSAATSE-----SVVVMLDGRIVGWCTPEECKSIAETLRYWKV 617
Query: 573 AGKIG-------EFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDG 625
G+ G +V +Y++S R+ RP+ K + KE
Sbjct: 618 NGENGVPLQLEIGYVPPSNGGSYPGLYMSSQPARMVRPV----KYLPLQKE--------- 664
Query: 626 VRSFDDFLREGLIEYLDVNEENNALIALYEGDATP-DTTHIEIEPFTILGVIAGLIPYPH 684
+++ E+ IA E + P D+TH+E +P IL ++A + P+
Sbjct: 665 -------------DFVGPQEQPYMSIACTEQEVIPGDSTHVEFDPTNILSILANMTPFSD 711
Query: 685 HNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAG 744
NQSPRN YQC MGKQ MG A R D+ +Y L Q P++ G+D G
Sbjct: 712 FNQSPRNMYQCQMGKQTMGTPATALAHRTDNKMYRLQTGQTPVVRAPLHNTYGFDNFPNG 771
Query: 745 QNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK-KYTAINQKYANSTSDRILR--- 800
NA VAV+SY+GYD++DA+++NKS+ +RGFG + K K ++ ++ I++
Sbjct: 772 MNAVVAVISYTGYDMDDAMILNKSAHERGFGHGSIYKTKKVSLKDDSRTRSAKSIVKMFG 831
Query: 801 --PDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKES-PLETRGSIMSPTGQTD-SRY 856
P+ T + R +LD+DGL G +++ DV + + G +++ G T RY
Sbjct: 832 FAPNSTIRESTR-DMLDNDGLPRVGRLLREGDVICAWHTVSADYNGQLVNRDGVTHYERY 890
Query: 857 RSARQTYKGPDGETCVVDRVALCSDKNGD---LCIKFLIRHTRRPELGDKFSSRHGQKGV 913
+ D E V+ V + NG + +R R P +GDKFSSRHGQKGV
Sbjct: 891 K---------DSEDAFVEEVRVIGADNGTEPLQTVSIKLRIPRSPVIGDKFSSRHGQKGV 941
Query: 914 CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 963
D PFSE GI PD+I+NPH FPSRMT+G +E L GKAG G
Sbjct: 942 LSQKWPATDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHG 991
>sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I subunit RPA135 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA135 PE=1
SV=1
Length = 1203
Score = 283 bits (725), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 277/1002 (27%), Positives = 456/1002 (45%), Gaps = 150/1002 (14%)
Query: 45 VKQHLDSFNYF--------VNTGIRKI----------VRANDRIVSG--IDPSIFLRFKD 84
V+ H+ SFN +N G++ I + + D I + + + + +
Sbjct: 42 VQPHIGSFNALTEGPDGGLLNLGVKDIGEKVIFDGKPLNSEDEISNSGYLGNKLSVSVEQ 101
Query: 85 VRIGQPSMTVDGVSE----KLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVV 140
V I +P M+ DGVS K+ P R +Y +L+ +++ ++ E+ E D
Sbjct: 102 VSIAKP-MSNDGVSSAVERKVYPSESRQRLTSYRGKLLLKLKW-SVNNGEENLFEVRDC- 158
Query: 141 IGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVL-LIQEQLSKNRVII 199
G +P+ML+S RC L EL + E + GGYFI+ G EK++ ++ Q + + I
Sbjct: 159 -GGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAI 217
Query: 200 DTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLN------QFVKK-----IPIMVVM 248
N AS + ++S Q + + LN +F + +P+++++
Sbjct: 218 IRPSFANRGASYSHYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLVPVVMIL 277
Query: 249 KAMGMESDQEVVQ-MVGRD-------PRYSALLLPSIEECANLDIYTQEKALEYLEGKVK 300
KA+ SD+E+ ++G D R LL + +L TQ L+YL K
Sbjct: 278 KALCHTSDREIFDGIIGNDVKDSFLTDRLELLLRGFKKRYPHLQNRTQ--VLQYLGDKF- 334
Query: 301 RSTFGSPPNDREGRAFSILRDVFLANVPVH--NNNFRPKCFYVAVMLRRMVEAMLNKDAM 358
R F + P+ + + ++V V VH + + K + M+R++ + + +
Sbjct: 335 RVVFQASPDQSD---LEVGQEVLDRIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSP 391
Query: 359 DDKDYVGNKRLELSGQLVSLLF----EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFI 414
D+ D ++ + L G L ++ ++ + +I++V+ ++ ++ + R+ +S+ +
Sbjct: 392 DNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAINFKDKRY-MSRVL 450
Query: 415 VRDSITVG--LERTLSTGNF------DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVS-P 465
+R + +G ++ LSTGN D+++ G T V +++F + H V
Sbjct: 451 MRVNENIGSKMQYFLSTGNLVSQSGLDLQQVS----GYTVVAEKINFYRFISHFRMVHRG 506
Query: 466 QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLI-SLCY 524
F K + R L P WG LCP TP+G CGL+ + A ++T + + I S+ Y
Sbjct: 507 SFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRISTQQSDVSRIPSILY 566
Query: 525 CLGVEDLELLSGEELHNPNSFLVIFNGLILG--KHRRPKCFADVMRKLRRAGK------- 575
LGV S P+ V +G I+G H + K AD +R + GK
Sbjct: 567 SLGVAPA---SHTFAAGPSLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLPID 623
Query: 576 --IGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFL 633
IG +V + +Y+ R+ RP+ + + KE D V F+
Sbjct: 624 LEIG-YVPPSTRGQYPGLYLFGGHSRMLRPV----RYLPLDKE-------DIVGPFEQVY 671
Query: 634 REGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTY 693
+ ++ +NN TH+E P IL ++A L P+ NQSPRN Y
Sbjct: 672 MNIAVTPQEI--QNNV------------HTHVEFTPTNILSILANLTPFSDFNQSPRNMY 717
Query: 694 QCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS 753
QC MGKQ MG R D+ LY L Q P++ + G D G NA VAV+S
Sbjct: 718 QCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVIS 777
Query: 754 YSGYDIEDAIVMNKSSLDRGFGRCIVVKKYT---AINQKYANSTSDRILRPDRTGPGAER 810
Y+GYD++DA+++NKS+ +RGFG + K A+N+ + + + P E
Sbjct: 778 YTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHFGFGNDEWP-KEW 836
Query: 811 MQILDDDGLAAPGEIIKPND---VYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPD 867
++ LD+DGL G ++ D Y + D+ ++ +TY
Sbjct: 837 LEKLDEDGLPYIGTYVEEGDPICAYFD------------------DTLNKTKIKTYH--S 876
Query: 868 GETCVVDRVALCSDKNGD------LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQE 921
E ++ V L D++ + IK+ IR R P++GDKFSSRHGQKGVC
Sbjct: 877 SEPAYIEEVNLIGDESNKFQELQTVSIKYRIR--RTPQIGDKFSSRHGQKGVCSRKWPTI 934
Query: 922 DFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCG 963
D PFSE GI PD+I+NPH FPSRMT+G +E L GKAG G
Sbjct: 935 DMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHG 976
>sp|P20028|RPA2_DROME DNA-directed RNA polymerase I subunit RPA2 OS=Drosophila
melanogaster GN=RpI135 PE=2 SV=2
Length = 1129
Score = 279 bits (713), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 246/990 (24%), Positives = 434/990 (43%), Gaps = 117/990 (11%)
Query: 31 KFQLLPEFLK--VRGLVKQHLDSFNYFVNTGIRKIVRA--NDRIVSGIDPSIFLRFKDVR 86
+F+ +P+ L + L H+DSF+ + G+ + + +S I ++ + +
Sbjct: 20 EFKQIPKKLSRHLANLGGPHVDSFDEMLTVGLDNSAKHMIPNHWLSPAGEKISMKVESIW 79
Query: 87 IGQPSM---TVDGVSEKLNPHMCRLSDMTYAAPILVNIEY-VQGSHTEKTTMEKNDVVIG 142
I +P + +D + ++ P R ++Y+ V + + V G M+ +G
Sbjct: 80 IAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMD-----LG 134
Query: 143 RIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVII--- 199
+PIMLRS C L E+ + GE + GG F+I+G EK++ + +N I
Sbjct: 135 EVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKR 194
Query: 200 -DTDKKGNINASVTSSTETVK------SKTVIQMEKGKMYLLLNQF--VKKIPIMVVMKA 250
+G + + +TV+ S V + G + + + +P+ +++K
Sbjct: 195 SSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKC 254
Query: 251 MGMESDQEV----VQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGS 306
+ +D+E+ VQ D Y + + + E N ++YT + ++ G + R+ F
Sbjct: 255 LMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFI-GNLFRARFPE 313
Query: 307 PPN---DREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDY 363
P D + F ILR+ V +H + + K + M++++ + K +++ D
Sbjct: 314 VPEWQPDDDVTDF-ILRE----RVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDS 368
Query: 364 VGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVG- 422
+ + L G L + ++ +S+V++ + L+ P + +R + VG
Sbjct: 369 AMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAGGVGR 428
Query: 423 -LERTLSTGNFDVKRFK--MHRKG---MTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGP 476
+E L+TGN + M G M + + R+ ++ + R S + + + +
Sbjct: 429 AIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGS--YFTTMRTTEA 486
Query: 477 RALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSG 536
R L P WG +CP TP+G CGL+ +L L ++ + + ++ L + LS
Sbjct: 487 RQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMMPLSN 546
Query: 537 EELHNPNSFLVIFNGLILGKHRRPKC--------FADVMRKLRRAGKIGEFVSVFVNEKQ 588
++V +G LG + + + + L + +IG F+ N +
Sbjct: 547 RRYLGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGTLPQMMEIG-FIPFKKNGQF 605
Query: 589 RCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENN 648
+YIA+ R+ RP+ L+ +EY+ E+
Sbjct: 606 PGLYIATGPARMMRPVW--------------------------NLKWKRVEYIGTLEQLY 639
Query: 649 ALIALYEGDATPD-TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAF 707
IA+ + PD TTH+E+ + +A LIP P +NQSPRN YQC MGKQ MG
Sbjct: 640 MEIAIDAKEMYPDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCL 699
Query: 708 NQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK 767
N + + LY L P PL + + D G NA VAV+SY+GYD+EDA+++NK
Sbjct: 700 NWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINK 759
Query: 768 SSLDRGFGRCIVVK-KYTAINQKYANSTSDRILRPDRTGPGAERMQILDDDGLAAPGEII 826
++ +RGF + K K+ +++K + R E ++ LD DGL PG +
Sbjct: 760 AAYERGFAYGSIYKTKFLTLDKKSSYFA--------RHPHMPELIKHLDTDGLPHPGSKL 811
Query: 827 ---KPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCS--D 881
P Y + E + + K + E C+V+ + D
Sbjct: 812 SYGSPLYCYFDGEV--------------------ATYKVVKMDEKEDCIVESIRQLGSFD 851
Query: 882 KNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGF 941
+ + +R R +GDKF+SR GQKG+C ED PF+E G+ PD++ NPHGF
Sbjct: 852 LSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGF 911
Query: 942 PSRMTVGKMIELLGGKAGVSCGRFHYGSAF 971
PSRMT+ MIE + GK G + + F
Sbjct: 912 PSRMTIAMMIETMAGKGAAIHGNVYDATPF 941
>sp|Q6GZR3|RPB2_FRG3G Putative DNA-directed RNA polymerase II subunit RPB2 homolog OS=Frog
virus 3 (isolate Goorha) GN=FV3-062L PE=3 SV=1
Length = 1221
Score = 275 bits (704), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 264/1005 (26%), Positives = 445/1005 (44%), Gaps = 120/1005 (11%)
Query: 44 LVKQHLDSFN-YFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLN 102
V+ H++SF+ N + R V G ++F VR +P EKL
Sbjct: 97 FVRHHIESFDDMLWNEFPAMVAREKPVSVKGYR----VKFGTVRY-EPPCPDGKPWEKLT 151
Query: 103 PHMCRLSDMTYAAPILVNIEYV--QGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDE 160
P M R +D TY + + ++ +G T +E + +IP+M+ S C + + E
Sbjct: 152 PAMARRTDATYHSAAVCDLTVTDPKGLETVYPRLE-----LCKIPVMVGSAVC--WTRTE 204
Query: 161 AELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKS 220
GECP DPGGYFIIKG E+V++ + + ++ + + G + + + ET +
Sbjct: 205 GS-PLPGECPSDPGGYFIIKGKERVVVPHIRPAYDQPCVYKNGDGWLCEFRSVNRET-RQ 262
Query: 221 KTVIQME---KGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG------------- 264
++Q + + K+ L + +P+ +V KA+G ++ +E V M G
Sbjct: 263 TVLVQAKTDCRRKLEFSLPYIKQYVPVGLVFKALG-KTAREAVAMCGLGSFLGDEVSCRT 321
Query: 265 -RDPRYSALLLPSI-----EECANLDIYTQEKALEY---LEG--KVKRSTFGSPPNDR-- 311
+ALL+ + A+L + + Y EG + K + S DR
Sbjct: 322 VHHQSMAALLMEQHASAPEDPVADLAKHVPDGRSVYSKQAEGAKQAKYADRASVEEDRNA 381
Query: 312 EGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLEL 371
+G +R V + +H + ++ M++RM +A D+D + NKR++
Sbjct: 382 KGSKEDYVRHVLAGEIFLHGGD---AAEHLGWMVKRMADAASGIGTCTDRDDLANKRVDA 438
Query: 372 SGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS---ITVGLERTLS 428
+G L++ L + L K + K S + +L + V + +T L +
Sbjct: 439 TGPLIAFLLDGLLKQYVKLFVK---------SAGCQKNLCPYTVLQNSMVMTNSLHMCFA 489
Query: 429 TGNFDVKRF---KMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWG 485
TGN+ VKR R G++QVL+ ++ + H+ R+ K R L S +G
Sbjct: 490 TGNWTVKRLGPPSYVRVGVSQVLSNNNYGARVSHLRRIMHAVSFRGKNIRMRQLHSSHYG 549
Query: 486 MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLC--------YCLGVEDLELLSGE 537
LCP +TPEGE G+V N+A + + +++ + G SG
Sbjct: 550 FLCPYETPEGEKVGIVLNMAEGAGFSLETPREVVLATVRLGKGLPGFFEGAPARLAWSGA 609
Query: 538 ELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDG 597
S V +G++ G P F +R A VSV + +R +++
Sbjct: 610 A----GSASVDVDGVLCGVTGDPVGF------VREARLCLPGVSVVWKKVEREIHLLGCQ 659
Query: 598 GRVCR----PLVIADKGISRIKEHHMKEL-LDGVRSFDDFLREGLIEYLDVNEENNALIA 652
GR R P I G +++ +D S + V + ++ +
Sbjct: 660 GRFVRRVLDPEGIRGSGYDSPPAPEERDIEMDPAPSSSPSDSLPCPPGVYVCAQELSVCS 719
Query: 653 LYEGD-ATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLC 711
L +G+ A P + I + ++ +IP+ H QSPRN YQ MGKQA+G A N
Sbjct: 720 LGDGEYADPPASEI------LTDAMSSVIPFYDHTQSPRNAYQSNMGKQAIGFPAVNCSD 773
Query: 712 RMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLD 771
R D+ L+ L YPQ+ L+ +R+++ +G+D++ G VA+M+ G++ ED++V+N SSLD
Sbjct: 774 RYDATLHRLDYPQKSLVDSRSVKRLGFDEMAHGALPVVAIMTAGGFNQEDSVVLNASSLD 833
Query: 772 RGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAER-MQILDDDGLAAP---GEIIK 827
RG C+ + + +++ S+ + PD E +L DDG+ P G + +
Sbjct: 834 RGLFSCVTYRTVSCADKRRTKYDSEVVCLPDWGLRNREWDYDLLGDDGVIDPSCAGALAR 893
Query: 828 PNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYK-------GPDG------------ 868
+ + + P G D+ + A GP G
Sbjct: 894 RVEGKRKAAKRPAGQRTGGGPAGLCDALWIPAGTVLVGKVSHSLGPGGNPMRRDVSLTVK 953
Query: 869 --ETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFS 926
E +DRV + D +G +K +R R PE+GDKF+S QKG CG ++ QED PF
Sbjct: 954 QSEEGYLDRVTVDVDSDGKKLVKVRLRTPRHPEMGDKFASFTAQKGTCGAVLTQEDMPFD 1013
Query: 927 ERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 971
+ G+ PDLI+NPH FPSRMTV ++++ G A G+ + +AF
Sbjct: 1014 KDGVVPDLIINPHAFPSRMTVNYLLQMCFGTAACKLGKTYDATAF 1058
>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPA2 PE=3 SV=2
Length = 1196
Score = 275 bits (704), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 262/963 (27%), Positives = 433/963 (44%), Gaps = 133/963 (13%)
Query: 65 RANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVS----EKLNPHMCRLSDMTYAAPILVN 120
+A+D + + + L V + +P M+ DGV+ + P R TY +L+
Sbjct: 76 KASDENPNYLGNKLALSVTQVSLTKP-MSNDGVTAAAERNVFPAEARKRLTTYRGKLLLK 134
Query: 121 IEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIK 180
+ + + E+T E D G +P+ML+S RC L+ EL E + GGYFI+
Sbjct: 135 LNW-SVNDGEETFSEVRDC--GPLPVMLQSNRCHLHKMSPQELVEHKEESDELGGYFIVN 191
Query: 181 GTEKV--LLIQEQLSKNRVII--------DTDKKGNINASVTSSTETVKSKTVIQMEKGK 230
G EK+ +LI ++ + II + + +T ++ + + G+
Sbjct: 192 GIEKLIRMLIVQRRNHPMAIIRPSFANRGTSYSHYGVQIRCVRPDQTSQTNVLHYLNDGQ 251
Query: 231 MYLLL----NQFVKKIPIMVVMKAMGMESDQEVVQ-MVGRDPRYS------ALLLPSIEE 279
+ N+++ +P+++++KA+ SD+E+ +VG D S LLL ++
Sbjct: 252 VTFRFSWRKNEYL--VPVVLILKALTDASDREIFDGIVGADTSNSFLTDRLELLLRGFKK 309
Query: 280 CANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCF 339
+ + + L+YL K + SP +LR + L ++ N + K
Sbjct: 310 RFP-QLLNRRQVLQYLGDKFRVVLQASPDMSDYLVGQELLRRIVLVHLGDENTD---KSN 365
Query: 340 YVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLL----FEDLFKTMISEVQKTV 395
+ M+R++ + + D+ D ++ + L G L ++ E+ + + ++Q V
Sbjct: 366 MLMFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMIVKEKIEEYLQNIKLQIQADV 425
Query: 396 DIILSKPSRSSRFDLSQFIVRDSITVG--LERTLSTGNF------DVKRFKMHRKGMTQV 447
+ + + ++ +++ + R + +G L+ LSTGN D+++ G T V
Sbjct: 426 NRGMPVDFKDRKY-MTRVLTRINENIGSKLQYFLSTGNLVSQSGLDLQQVS----GYTVV 480
Query: 448 LARLSFIGTLGHMTRVS-PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLAL 506
+++F + H V F K + R L P WG LCP TP+G CGL+ + A
Sbjct: 481 AEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAH 540
Query: 507 MTHVTTDEEEGPLI-SLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILG--KHRRPKCF 563
++T + + I +L Y LGV ++ P+ V +G I+G H + +
Sbjct: 541 KCKISTTQSDVSKIPTLLYSLGVSPAAHVTAA---GPSLCCVQLDGKIVGWCSHEQGRIV 597
Query: 564 ADVMRKLRRAGK---------IGEFVSVFVNEKQRCVYIASDGGRVCRPL--VIADKGIS 612
AD +R + GK IG +V + +Y+ R+ RP+ + DK
Sbjct: 598 ADTLRYWKVEGKTDGLPLDLEIG-YVPASKRGQYPGLYLFGGHSRMMRPVRYLPLDKQ-- 654
Query: 613 RIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTI 672
D V F+ + + ++ +NN TH+E P I
Sbjct: 655 -----------DIVGPFEQVYMDIAVTPEEI--QNNV------------HTHVEFSPTNI 689
Query: 673 LGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRT 732
L ++A L P+ NQSPRN YQC MGKQ MG R D+ LY L Q P++
Sbjct: 690 LSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSGQTPIVKANL 749
Query: 733 IELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYAN 792
+ G D G NA VAV+SY+GYD++DA+++NKS+ +RGF V K I+ +
Sbjct: 750 YDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFSYGTVYKT-EKIDLSLSR 808
Query: 793 STSDRILRPDRTGPG---AERMQILDDDGLAAPGEIIKPND---VYINKESPLETRGSIM 846
D + + G E ++ LD+DGL G ++ D Y +
Sbjct: 809 GRGDPVTQHFGFGTDEWPKEWLEKLDEDGLPIIGSYVEEGDPICAYFD------------ 856
Query: 847 SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGD------LCIKFLIRHTRRPEL 900
D+ ++ +TY E ++ V L D++ + IK+ IR R P++
Sbjct: 857 ------DTLNKTKIKTYHS--SEPAYIEEVTLIGDESNKFQELQYITIKYRIR--RVPQI 906
Query: 901 GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV 960
GDKFSSRHGQKGVC D PFSE GI PD+I+NPH FPSRMT+G +E L GKAG
Sbjct: 907 GDKFSSRHGQKGVCSRKWPTVDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGA 966
Query: 961 SCG 963
G
Sbjct: 967 LHG 969
>sp|Q197F1|RPB2_IIV3 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3
SV=1
Length = 1140
Score = 271 bits (693), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 213/658 (32%), Positives = 333/658 (50%), Gaps = 74/658 (11%)
Query: 341 VAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILS 400
+A M+++ + + K +D++D +KR+E +G+L S LF L+K + QKT +
Sbjct: 371 LAFMVKKYLLTLTRKIPVDNRDDYNHKRVETAGELYSFLFRLLYK----KFQKTCITQI- 425
Query: 401 KPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVL-ARLSFIGTLGH 459
R+ + D+S F+ IT G+ + S+G + V+R R G++QV+ ++S +
Sbjct: 426 ---RNRKPDISNFLRTSGITTGILYSFSSGYWGVQRNTYIRTGVSQVVNPKVSLLANYSS 482
Query: 460 MTRVS-PQFE--KSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEE 516
+ RV P+ + K K S R + PS ++CP +TPEG+ G V N+A+ VTT
Sbjct: 483 LRRVVIPESKDGKEAKTSEIRQIHPSSSFLVCPVETPEGKGVGTVLNMAVFCQVTTG--- 539
Query: 517 GPLISLCYCLGVED---LELLSGEELHNPNS-FLVIFNGLILGKHRRPKCFADVMRKLRR 572
IS C + D ++L + +PN+ L++ NG G A+V+ +L
Sbjct: 540 ---ISTCEIMDQIDSFGVDLKCHCTIKDPNNCLLLLINGSPYGNGH-----ANVIHRLNF 591
Query: 573 AGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDF 632
+S+ VN + I SD GR RP+ DK + E V SF F
Sbjct: 592 LNDTN--ISIVVNRALGVIEIFSDAGRFIRPIFDLDKICNFEGEI--------VPSFKWF 641
Query: 633 LREGLIEYLDVNEE--NNALIALYEGDATPDTTH--IEIEPFTILGVIAGLIPYPHHNQS 688
L LI Y+D+NE N+ I L + P+T + +E++P + G++AG+IP+P QS
Sbjct: 642 LDNQLIRYIDINEAAANSIAIELRDLSTNPNTRYNLMELDPCGMFGIVAGIIPFPDRTQS 701
Query: 689 PRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNAT 748
RN + +M KQA+G + + L + +++ + L YPQ+PL+TT E ++ G NA
Sbjct: 702 ARNCFYSSMVKQAIGFVPCHNL-KTETVSHTLNYPQKPLVTTSFAEYNQLNEYPNGINAI 760
Query: 749 VAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGA 808
VA+ Y+GY+ ED+I++NKSS+DRG I +TA +K +RI P +
Sbjct: 761 VAIACYTGYNQEDSIILNKSSIDRGLFGTITYNTFTA-QEKKNGIIEERIEIP------S 813
Query: 809 ERMQILD-DDGLAAPGEII------KPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQ 861
++I D + GL P I+ K DV I K + + Q + S+
Sbjct: 814 NAIKIRDCNYGLVGPDGIVRLRQRVKKGDVLICKVT--------IKNKNQDEKLVDSSVI 865
Query: 862 TYKGPDGETCVVDRVALCSDKNGDLC--IKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQ 919
G +G VDR+ D D C +K +I R PE+GDKF S QKG CG I
Sbjct: 866 VQHGEEG---YVDRIV---DNVIDGCRIVKVVIGQMRTPEIGDKFCSGMAQKGTCGMIFP 919
Query: 920 QEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGV--SCGRFHYGSAFGEPS 975
QED PF+ G+ PD+I+NP+ PSRMT+ ++I + GK RF G++F E S
Sbjct: 920 QEDMPFTASGMTPDIIINPNCIPSRMTINQIISTVMGKLYTVNPNPRFRNGNSFQENS 977
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 129/256 (50%), Gaps = 13/256 (5%)
Query: 14 QLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSG 73
QL K KL + S ++ +++ ++ K GLVK +++FN+F++ G++ I+ I
Sbjct: 3 QLNQKTKLDKHLSSD-NRAKIVADYFKTNGLVKHQIETFNHFISKGLKTIINNESSIKYQ 61
Query: 74 IDPSIFLRFKDVRIGQPSMTVDGVS-EKLNPHMCRLSDMTYAAPILVN-IEYVQGSHTEK 131
+ L+F ++ + PS+ D + L P R D++Y + VN IE V+ +
Sbjct: 62 SHDNYSLKFTNIYVEYPSIIDDDRTIRDLYPQEARNKDLSYTGNVCVNVIEMVENKEGKP 121
Query: 132 TTM-EKNDVVIGRIPIMLRSCRCVLYGKDEAELARL-GECPLDPGGYFIIKGTEKVLLIQ 189
+ E+ V I +IPIML S C L E ++ G D GGYFII G E+VL+ Q
Sbjct: 122 PQISEQYRVPIAKIPIMLGSDVCHLSKYTPLENEQINGHSQADQGGYFIINGKERVLISQ 181
Query: 190 EQLSKNR---VIIDTDKKGNINASVTSST--ETVKSKTV-IQMEKGKMY--LLLNQFVKK 241
+ + N+ + T +K ++ S ET S +V ++M K K+ L L + +
Sbjct: 182 VRKAYNKPVCFVKSTSQKEDVLICEMRSMCEETFHSTSVQVKMIKNKIMVSLKLKRKLID 241
Query: 242 IPIMVVMKAMGMESDQ 257
IP+ +V K +G DQ
Sbjct: 242 IPVGIVFKCLGYNPDQ 257
>sp|P41558|RPOB2_METVS DNA-directed RNA polymerase subunit B'' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoB2 PE=3 SV=1
Length = 499
Score = 249 bits (636), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 155/497 (31%), Positives = 265/497 (53%), Gaps = 17/497 (3%)
Query: 38 FLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQP-SMTVDG 96
F + LVK H+DS++ FV I+ I+ + + I + F VR+ +P + DG
Sbjct: 10 FFRENSLVKHHIDSYDDFVENKIQGIIDEVTGVETEIKGGYKVSFGKVRVTKPINKEADG 69
Query: 97 VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLY 156
+++ P R+ ++ Y+AP+ + + + G E+ T+ +V IG +P+ML + C L
Sbjct: 70 SVKEITPMEARIRNLAYSAPLYLEMIPLIGEGDEEKTLSPIEVYIGELPVMLGAKICHLS 129
Query: 157 GKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNI---NASVTS 213
GK E ++ GE P DP GYFI+ G+EK ++ QE L NR++ + +K N A V S
Sbjct: 130 GKSEEDMINYGEDPKDPLGYFIVNGSEKAVVAQEDLIPNRILCEKVEKNNKIVDIAKVFS 189
Query: 214 STETVKSK-TVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSAL 272
+ ++ TV + G + + IP++++M+A+G ESD+E+++++ +P
Sbjct: 190 TRHGFRALCTVERSPDGLLNVSFPGMPSTIPLVILMRALGAESDREIMELISDEPTVVMQ 249
Query: 273 LLPSIEEC-ANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHN 331
L+ +++E I T E ALE++ KR G P + RA +IL + L ++ + +
Sbjct: 250 LVANLQEAREEHGINTTEDALEHIG---KRVAPGQPKEYKLKRAETILCNYLLPHMGIES 306
Query: 332 NNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV 391
KC Y+ M + +E L DDKD+ NKRL+L+G L+ LF F +I ++
Sbjct: 307 EKLGAKCKYLGRMAKNSIELYLGSRVEDDKDHYANKRLKLAGDLMEDLFRHSFNQLIKDI 366
Query: 392 QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARL 451
+ ++ + R+ + + D +T + ++TGN + R G++Q+L R
Sbjct: 367 KYQLE---RQAIRNKEPSIQAAVRSDVLTERMRHAMATGN-----WVGGRTGVSQLLDRT 418
Query: 452 SFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT 511
S++ T+ + RV +S+ R L +QWG +CP +TPEG CGLVKNLA+M VT
Sbjct: 419 SYLATVSQLRRVVSPLSRSQPHFEARDLHATQWGKICPSETPEGPNCGLVKNLAVMCKVT 478
Query: 512 TDEEEGPLISLCYCLGV 528
TDEE+ +I L +G+
Sbjct: 479 TDEEDEGIIQLIKEIGL 495
>sp|P0C8K3|RPB2_ASFM2 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-061 PE=3 SV=1
Length = 1242
Score = 244 bits (624), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 261/1064 (24%), Positives = 449/1064 (42%), Gaps = 145/1064 (13%)
Query: 29 VDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA---------NDRIVSGIDP--- 76
D + + GL+ ++ SF+ ++ GI +IV+ + R + ID
Sbjct: 24 ADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQRDHTEIDKLRE 83
Query: 77 --SIFLRFKDVRIGQPSMTVDGVSEKLN--PHMCRLSDMTYAAPILVNIEYVQGSHTEKT 132
I F DV I +P K+N P+ RL ++Y+ P+ + E + +H
Sbjct: 84 SVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGPVNLAAEVILTAHYSNG 143
Query: 133 TMEKNDVVI-----GRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLL 187
E I PIM S RC Y + +GE P +PGGYFI +G E V+
Sbjct: 144 RQEVKRASIPPFQVSTFPIMRGSNRCHTYHLSKTAKKEIGEDPNEPGGYFIARGGEWVVD 203
Query: 188 IQEQLSKNRVIID--TDKKGN---INASVTS----STETVKSKTVIQMEKGKMYLLLN-- 236
+ E + N + I T ++GN I S + E + M G + + +N
Sbjct: 204 LLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYMTTGAITIEINST 263
Query: 237 QFVK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIY--------- 286
+F K +IP ++ + GM D +++ V D ++ + + E I+
Sbjct: 264 KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSPVNTFMIEILEKSIHVSDPIFQPV 323
Query: 287 ----TQEKALEYLEGKVKR-----STFGSPPNDRE---GRAFSILRDVFLANVPVHNNNF 334
+EK +++L KV + S + S N + R +IL + L ++ +
Sbjct: 324 QHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQLTILDKILLPHMGQTADTR 383
Query: 335 RPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKT 394
K ++ +++ +++ ++N D+D KR+ SG ++ F+ +F T S +
Sbjct: 384 VRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKAIFNT--SVIAPI 441
Query: 395 VDIILSKPSRSSRFDLSQFIVRDSITVGL------------ERTLSTGN--FDVKRFKMH 440
++ +++ DL+Q + ++ + L E+++ +GN V++ +
Sbjct: 442 INGFKELLKQTAFEDLTQRNIIEAFSAALSKNSASDLNRSMEQSIISGNKTIMVRQRPIV 501
Query: 441 RKGMTQVLARLSFIGTLGHM--------TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
+ TQ L R + + T+ + T S Q E++ + R + S G +C +
Sbjct: 502 NRVSTQSLERKNLLNTISALRTVNTHSTTNASKQTERADMM---RRVHASYPGYICVAQS 558
Query: 493 PE-GEACGLVKNLALMTHVTTDEEEGPLISLCYCL----GVEDLELLSGEELHNPNSFLV 547
+ GE G+ K LA+ +V T G ++SL L ++ L +S +++ V
Sbjct: 559 ADTGEKVGMSKQLAITANVCT---AGEVLSLKQRLLSDPAIQQLADVSNKDIVRKGLARV 615
Query: 548 IFNGLILGKHRRPKCFADVMRKLRRAGKIGE-FVSVFVNEKQRCVYIASDGGRVCRPLVI 606
NG +G A R LRR GKI +++ + V D GR+ RPL+I
Sbjct: 616 FINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRPLLI 675
Query: 607 ADKGI-------------------------------SRIKEHHMKELLDGVRSFDDFLRE 635
D I +R K++L G + +D + +
Sbjct: 676 VDNNIEKYNKACYKAAEARKKGDKDWEKHKIPFIQNTRFTSQMAKDILAGTLTLEDLVAQ 735
Query: 636 GLIEYLDVNEENNALIAL-------YEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQS 688
G+ E++ E N L+A ++ D T TH+++ P ILG+ A + PY + Q
Sbjct: 736 GICEFITPEEAENCLVAFSITELRKHKHDVTRRFTHVDV-PQAILGLAALVSPYANCTQP 794
Query: 689 PRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNAT 748
R TY+ G+Q G F+ R+D + Y + PL+ T V + G N
Sbjct: 795 ARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTIAHNYV----IPNGLNTI 850
Query: 749 VAVMSYSGYDIEDAIVMNKSSLDRG-FGRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
VA M Y GY+ ED++++++S +DRG F ++ + + L PG
Sbjct: 851 VAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVELESDIESFGKPDPLITKNLKPG 910
Query: 808 AERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPD 867
A +++D G G ++K D+ I G + G+ D + ++
Sbjct: 911 ANYEKLVD--GFVPVGTVVKKGDIII---------GKVAKIRGEKDELNKYIDRSVMYGF 959
Query: 868 GETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSE 927
E VVD V N ++ +R+ R +GDK SSR G KG+ + D PF+E
Sbjct: 960 DEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTE 1019
Query: 928 RGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 971
G+ PDLI+NPH PSRMT G+MIE G A G G+AF
Sbjct: 1020 DGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAF 1063
>sp|P0C8K5|RPB2_ASFWA DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Warthog/Namibia/Wart80/1980) GN=War-063 PE=3
SV=1
Length = 1242
Score = 244 bits (622), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 260/1064 (24%), Positives = 450/1064 (42%), Gaps = 145/1064 (13%)
Query: 29 VDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA---------NDRIVSGIDP--- 76
D + + GL+ ++ SF+ ++ GI +IV+ + R + ID
Sbjct: 24 ADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQRDHTEIDKLRE 83
Query: 77 --SIFLRFKDVRIGQPSMTVDGVSEKLN--PHMCRLSDMTYAAPILVNIEYVQGSHTEKT 132
I F DV I +P K+N P+ RL ++Y+ P+ + E + +H
Sbjct: 84 SVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGPVNLAAEVILTAHYSNG 143
Query: 133 TMEKNDVVI-----GRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLL 187
E I PIM S RC + + +GE P +PGGYFI +G E V+
Sbjct: 144 RQEVKRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKEIGEDPNEPGGYFIARGGEWVVD 203
Query: 188 IQEQLSKNRVIID--TDKKGN---INASVTS----STETVKSKTVIQMEKGKMYLLLN-- 236
+ E + N + I T ++GN I S + E + M G + + +N
Sbjct: 204 LLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYMTTGAITIEINST 263
Query: 237 QFVK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIY--------- 286
+F K +IP ++ + GM D +++ V D ++L+ + E I+
Sbjct: 264 KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSLVNTFMIEILEKSIHVLDPIFQPV 323
Query: 287 ----TQEKALEYLEGKVKR-----STFGSPPNDRE---GRAFSILRDVFLANVPVHNNNF 334
+EK +++L KV + S + S N + R +IL + L ++ +
Sbjct: 324 QHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQLTILDKILLPHMGQTADTR 383
Query: 335 RPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKT 394
K ++ +++ +++ ++N D+D KR+ SG ++ F+ +F T S +
Sbjct: 384 VRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKAIFNT--SVIAPI 441
Query: 395 VDIILSKPSRSSRFDLSQFIVRDSITVGL------------ERTLSTGN--FDVKRFKMH 440
++ +++ +L+Q + ++ + L E+++ +GN V++ +
Sbjct: 442 INGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLNRSMEQSIISGNKTIMVRQRPIV 501
Query: 441 RKGMTQVLARLSFIGTLGHM--------TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
+ TQ L R + + T+ + T S Q E++ + R + S G +C +
Sbjct: 502 NRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERADMM---RRVHASYPGYICVAQS 558
Query: 493 PE-GEACGLVKNLALMTHVTTDEEEGPLISLCYCL----GVEDLELLSGEELHNPNSFLV 547
+ GE G+ K LA+ +V T G ++SL L ++ L +S +++ V
Sbjct: 559 ADTGEKVGMSKQLAITANVCT---AGEVLSLKQRLLSDPAIQQLADVSNKDIVRKGLARV 615
Query: 548 IFNGLILGKHRRPKCFADVMRKLRRAGKIGE-FVSVFVNEKQRCVYIASDGGRVCRPLVI 606
NG +G A R LRR GKI +++ + V D GR+ RPL+I
Sbjct: 616 FINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRPLLI 675
Query: 607 ADKGI-------------------------------SRIKEHHMKELLDGVRSFDDFLRE 635
D I +R K++L G + +D + +
Sbjct: 676 VDNNIEKYNQACYKAAEARKKGDKDWEKHKIPFVQNTRFTSQMAKDILAGTLTLEDLVAQ 735
Query: 636 GLIEYLDVNEENNALIAL-------YEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQS 688
G+ E++ E N L+A ++ D T TH+++ P ILG+ A + PY + Q
Sbjct: 736 GICEFITPEEAENCLVAFSIIELRKHKHDVTRRFTHVDV-PQAILGLAALVSPYANCTQP 794
Query: 689 PRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNAT 748
R TY+ G+Q G F+ R+D + Y + PL+ T V + G N
Sbjct: 795 ARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTIAHNYV----IPNGLNTI 850
Query: 749 VAVMSYSGYDIEDAIVMNKSSLDRG-FGRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
VA M Y GY+ ED++++++S +DRG F ++ + + L PG
Sbjct: 851 VAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVELESDIESFGKPDPLITKNLKPG 910
Query: 808 AERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPD 867
A +++D G G ++K D+ I G + G+ D + ++
Sbjct: 911 ANYEKLVD--GFVPVGTVVKKGDIII---------GKVAKIRGEKDELNKYIDRSVMYGF 959
Query: 868 GETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSE 927
E VVD V N ++ +R+ R +GDK SSR G KG+ + D PF+E
Sbjct: 960 DEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTE 1019
Query: 928 RGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 971
G+ PDLI+NPH PSRMT G+MIE G A G G+AF
Sbjct: 1020 DGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAF 1063
>sp|P0C8K4|RPB2_ASFP4 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=Pret-065 PE=3 SV=1
Length = 1242
Score = 244 bits (622), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 260/1064 (24%), Positives = 450/1064 (42%), Gaps = 145/1064 (13%)
Query: 29 VDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRA---------NDRIVSGIDP--- 76
D + + GL+ ++ SF+ ++ GI +IV+ + R + ID
Sbjct: 24 ADMLSFISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQRDHTEIDKLRE 83
Query: 77 --SIFLRFKDVRIGQPSMTVDGVSEKLN--PHMCRLSDMTYAAPILVNIEYVQGSHTEKT 132
I F DV I +P K+N P+ RL ++Y+ P+ + E + +H
Sbjct: 84 SVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGPVNLAAEVILTAHYSNG 143
Query: 133 TMEKNDVVI-----GRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLL 187
E I PIM S RC + + +GE P +PGGYFI +G E V+
Sbjct: 144 RQEVKRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKEIGEDPNEPGGYFIARGGEWVVD 203
Query: 188 IQEQLSKNRVIID--TDKKGN---INASVTS----STETVKSKTVIQMEKGKMYLLLN-- 236
+ E + N + I T ++GN I S + E + M G + + +N
Sbjct: 204 LLENIRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYMTTGAITIEINST 263
Query: 237 QFVK-KIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIY--------- 286
+F K +IP ++ + GM D +++ V D ++L+ + E I+
Sbjct: 264 KFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSLVNTFMIEILEKSIHVLDPIFQPV 323
Query: 287 ----TQEKALEYLEGKVKR-----STFGSPPNDRE---GRAFSILRDVFLANVPVHNNNF 334
+EK +++L KV + S + S N + R +IL + L ++ +
Sbjct: 324 QHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQLTILDKILLPHMGQTADTR 383
Query: 335 RPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKT 394
K ++ +++ +++ ++N D+D KR+ SG ++ F+ +F T S +
Sbjct: 384 VRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKAIFNT--SVIAPI 441
Query: 395 VDIILSKPSRSSRFDLSQFIVRDSITVGL------------ERTLSTGN--FDVKRFKMH 440
++ +++ +L+Q + ++ + L E+++ +GN V++ +
Sbjct: 442 INGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLNRSMEQSIISGNKTIMVRQRPIV 501
Query: 441 RKGMTQVLARLSFIGTLGHM--------TRVSPQFEKSRKVSGPRALQPSQWGMLCPCDT 492
+ TQ L R + + T+ + T S Q E++ + R + S G +C +
Sbjct: 502 NRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERADMM---RRVHASYPGYICVAQS 558
Query: 493 PE-GEACGLVKNLALMTHVTTDEEEGPLISLCYCL----GVEDLELLSGEELHNPNSFLV 547
+ GE G+ K LA+ +V T G ++SL L ++ L +S +++ V
Sbjct: 559 ADTGEKVGMSKQLAITANVCT---AGEVLSLKQRLLSDPAIQQLADVSNKDIVRKGLARV 615
Query: 548 IFNGLILGKHRRPKCFADVMRKLRRAGKIGE-FVSVFVNEKQRCVYIASDGGRVCRPLVI 606
NG +G A R LRR GKI +++ + V D GR+ RPL+I
Sbjct: 616 FINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRPLLI 675
Query: 607 ADKGI-------------------------------SRIKEHHMKELLDGVRSFDDFLRE 635
D I +R K++L G + +D + +
Sbjct: 676 VDNNIEKYNQACYKAAEARKKGDKDWEKHKIPFVQNTRFTSQMAKDILAGTLTLEDLVAQ 735
Query: 636 GLIEYLDVNEENNALIAL-------YEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQS 688
G+ E++ E N L+A ++ D T TH+++ P ILG+ A + PY + Q
Sbjct: 736 GICEFITPEEAENCLVAFSIIELRKHKHDVTRRFTHVDV-PQAILGLAALVSPYANCTQP 794
Query: 689 PRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNAT 748
R TY+ G+Q G F+ R+D + Y + PL+ T V + G N
Sbjct: 795 ARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTIAHNYV----IPNGLNTI 850
Query: 749 VAVMSYSGYDIEDAIVMNKSSLDRG-FGRCIVVKKYTAINQKYANSTSDRILRPDRTGPG 807
VA M Y GY+ ED++++++S +DRG F ++ + + L PG
Sbjct: 851 VAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVELESDIESFGKPDPLITKNLKPG 910
Query: 808 AERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPD 867
A +++D G G ++K D+ I G + G+ D + ++
Sbjct: 911 ANYEKLVD--GFVPVGTVVKKGDIII---------GKVAKIRGEKDELNKYIDRSVMYGF 959
Query: 868 GETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSE 927
E VVD V N ++ +R+ R +GDK SSR G KG+ + D PF+E
Sbjct: 960 DEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTE 1019
Query: 928 RGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAF 971
G+ PDLI+NPH PSRMT G+MIE G A G G+AF
Sbjct: 1020 DGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAF 1063
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,830,544
Number of Sequences: 539616
Number of extensions: 16551328
Number of successful extensions: 40842
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 34150
Number of HSP's gapped (non-prelim): 4466
length of query: 993
length of database: 191,569,459
effective HSP length: 127
effective length of query: 866
effective length of database: 123,038,227
effective search space: 106551104582
effective search space used: 106551104582
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)