Query 001943
Match_columns 993
No_of_seqs 175 out of 1489
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 05:39:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_B DNA-directed RNA polyme 100.0 2E-238 7E-243 2201.7 30.9 950 24-990 10-1050(1210)
2 1twf_B DNA-directed RNA polyme 100.0 3E-232 9E-237 2172.7 62.8 946 25-989 24-1060(1224)
3 4ayb_B DNA-directed RNA polyme 100.0 7E-212 2E-216 2001.4 63.6 938 24-988 6-960 (1131)
4 2a6h_C DNA-directed RNA polyme 100.0 3E-178 1E-182 1645.9 33.9 797 28-988 2-918 (1119)
5 3lu0_C DNA-directed RNA polyme 100.0 9E-164 3E-168 1496.9 38.0 791 24-964 7-1126(1342)
6 3mlq_A DNA-directed RNA polyme 100.0 1.3E-30 4.3E-35 265.5 11.4 119 43-197 2-132 (188)
7 3tbi_B DNA-directed RNA polyme 99.3 5.9E-13 2E-17 137.0 6.1 99 778-882 2-108 (228)
8 3lti_A DNA-directed RNA polyme 98.8 6.9E-08 2.4E-12 104.3 16.2 68 192-264 4-78 (296)
9 3mlq_A DNA-directed RNA polyme 96.4 0.0014 4.7E-08 66.8 3.0 64 364-432 121-184 (188)
10 2g7j_A Putative cytoplasmic pr 16.1 56 0.0019 29.6 1.6 38 922-959 77-114 (124)
No 1
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-238 Score=2201.70 Aligned_cols=950 Identities=35% Similarity=0.590 Sum_probs=853.4
Q ss_pred CCcccccccccccccccccchHHHHHHHHHHHHHhCHHHHHHhcCcccccCC-----------CcEEEEEeeEEEcCCee
Q 001943 24 PVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID-----------PSIFLRFKDVRIGQPSM 92 (993)
Q Consensus 24 ~~~~~~~~~~~i~~~~~~~~Lv~~hi~SFn~Fi~~gl~~ii~~~~~I~~~~~-----------~~~~l~f~~v~i~~P~~ 92 (993)
..++.+++|.++++||+.++||+|||||||+|+++||++|++++++|+++.+ .+++|+|++++|++|++
T Consensus 10 ~~~~~ed~w~li~aff~~~gLV~qHIdSFN~FI~~~Lq~IV~~~~~I~~~~~~~~~~~~~~~~~~~~l~f~~i~v~kP~~ 89 (1210)
T 3h0g_B 10 ETLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDVTRRYEINFGQIYLSRPTM 89 (1210)
T ss_dssp CCCCHHHHHHHHHHHHHHTCTTCSSSSSSSSSTTTTHHHHSSTTCCCC-------------------CEEEEEECCCCCC
T ss_pred ccCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhHHHHHhccCcEEecCccCcccccccCCceEEEEEEEEEEcCCce
Confidence 4588999999999999999999999999999999999999999999976542 36899999999999999
Q ss_pred ccCC-CCCCCChHHHHhcCCccCceEEEEEEEEECCcc----------c---ceeeEEeEEEEeeccceeccccccCCCC
Q 001943 93 TVDG-VSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHT----------E---KTTMEKNDVVIGRIPIMLRSCRCVLYGK 158 (993)
Q Consensus 93 ~~~~-~~~~l~P~EcR~r~lTYs~~l~v~v~~~~~~~~----------~---~~~i~~~~v~iG~iPIMv~S~~C~L~~~ 158 (993)
.+++ ..++|||+|||+|++||+|||+|+|+++.++.. . .......++.+|+|||||||++|||+++
T Consensus 90 ~e~d~~~~~l~P~EcRlR~lTYsapl~Vdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~iPIMlrS~~C~L~g~ 169 (1210)
T 3h0g_B 90 TEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGV 169 (1210)
T ss_dssp BCTTSCBCCCCTTTTTTTCCCCEEEEEEEEEC---------------------CCSSCCCEEEEEEECCSSSTTSSSSSC
T ss_pred ecCCCcccccCHHHHHhcCCccceeEEEEEEEEEcCccccccccccccccccccccccceEEEecCCEEeCCCcccCCCC
Confidence 8877 788999999999999999999999999865411 0 0112235799999999999999999999
Q ss_pred CHHHHHhcCCCCCCCCcEEEEcCceeEEEEeecccCCEEEEEeCCC---CceEEEEEecCCCcc----cEEEEEee----
Q 001943 159 DEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKK---GNINASVTSSTETVK----SKTVIQME---- 227 (993)
Q Consensus 159 s~~el~~~gE~~~d~GGYFIInG~ERVI~~q~~~~~N~i~~~~~~~---g~~~~~v~s~~~~~~----~~~~~~~~---- 227 (993)
+++||++.||||+|+||||||||+||||++|++.++|+|++++++. ..+.|.++|.+.+.+ +.++.++.
T Consensus 170 s~~eL~~~gEcp~D~GGYFIING~EKVII~qerla~N~~iv~~~~~~~~~~~~a~irS~~~~~~~~~s~~~v~~~~~~~~ 249 (1210)
T 3h0g_B 170 SDSELYDLNECPYDQGGYFIINGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTE 249 (1210)
T ss_dssp CHHHHHHTTCCTTCCCCCBCGGGSCBCCCBCBCCCCSCCCCCCCCCSSSCCCCCCCCCCCCSSSCCCCCCCCCCCCCCTT
T ss_pred CHHHHHhcCCCCCCCCCEEEEeCEEEEEEechhhccceEEEEeecCCCCceEEEEEEEEecCCccceeEEEEEEEecccc
Confidence 9999999999999999999999999999999999999999986543 246788888887532 22233332
Q ss_pred --CCEEEEEEccccccccHHHHHHHhCCCCHHHHHHHhC---CchhhHhhhhhhHHHHHhcCCcCHHHHHHHHhhhcccC
Q 001943 228 --KGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRS 302 (993)
Q Consensus 228 --~g~i~~~~~~~~~~IPl~ilLrALg~~sD~eI~~~i~---~~~~~~~~l~~~l~~~~~~~i~t~~~al~yIg~~~~~~ 302 (993)
++.++++++.++.+||++++|||||.+||+||++.|. .+.++.+.+..+|+++. .++||++||+|||+|++..
T Consensus 250 ~~~~~i~~~~~~~~~~IPi~ivlkALg~~sD~EI~~~I~~~~~d~~~~~~l~~slee~~--~i~tq~~aL~yIG~r~~~~ 327 (1210)
T 3h0g_B 250 NSGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAF--VIQDKDIALDYIGKRGSTT 327 (1210)
T ss_dssp SCSCCCCCCCTTSCSCCCSHHHHTTTTCCSTTHHHHHHCCSSCCHHHHHTHHHHHHTTS--SCCSSHHHHHTTCCCSSSC
T ss_pred CCCceEEEEEeccccCCcHHHHHHHcCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHhh--hcCCHHHHHHHHHHhcccc
Confidence 5688999999888999999999999999999999994 57788899999998774 4889999999999999853
Q ss_pred CCCCCCCChHHHHHHHHhhhhcCCCCCCCCCCCcchhhHHHHHHHHHHhhcCCCCCCCcccccceEEcchHHHHHHHHHH
Q 001943 303 TFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFED 382 (993)
Q Consensus 303 ~~~~~~~~~~e~~~~~L~~~ll~Hl~~~~~~~~~K~~~L~~Mi~kLl~~~~g~~~~DD~D~l~nkRv~~~G~Ll~~lfr~ 382 (993)
..++++ ++++|+++|++++|||++....++.+||.||++|+|||++++.|.+.+||+|||+||||+++|+||+.+||+
T Consensus 328 -~~~~~~-~~~~a~~iL~~~lLpHl~~~~~~~~~Ka~fL~~MvrkLl~~~~G~~~~Dd~D~~~nkrl~l~G~Ll~~lfr~ 405 (1210)
T 3h0g_B 328 -GVTREK-RLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRM 405 (1210)
T ss_dssp -CCCHHH-HHHHHHHHHTTTSSCSSCCSSSCCSSHHHHHHHHHHHHHHHHTTSSCCCCTTCSSSCCBCCHHHHHHHHHHH
T ss_pred -CCCchh-HHHHHHHHHHhhEEeCcCCCccchhHHHHHHHHHHHHHHHHhCCCCCCCCCccccCeEEecHHHHHHHHHHH
Confidence 234445 789999999999999999888788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhcCCCCCCCcccccccccccchhhhhhhhccCCCc-ccccccccccceEEeccccccccccccc
Q 001943 383 LFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFD-VKRFKMHRKGMTQVLARLSFIGTLGHMT 461 (993)
Q Consensus 383 ~l~~~~~~ik~~l~~~~~~~~~~~~~~~~~~i~~~~It~~i~~~~aTGnw~-~~~~~~q~sG~sq~l~r~N~ls~lshlR 461 (993)
.|+++++.+++.+.+.+.+. ..+++..+++++.||++|++|||||||+ .++++++++|+||+|+|+||+|+|||||
T Consensus 406 ~~~~~~~~i~~~l~k~~~~~---~~~~~~~~i~~~~It~~l~~~laTGNW~~~kk~~~~~sGvsqvl~R~n~~s~lShlR 482 (1210)
T 3h0g_B 406 LFRKMTRDVYKYMQKCVETN---REFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLR 482 (1210)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---CSCCCTTSSCSTTTSHHHHHHHSSSCSSTTSSCCSCCCCSCCBCCCSSHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhcC---CccCHHHhcchhhhHHHHHHHhhcCCcccccccccCcCCEEEEcccCCHHHHHHHHH
Confidence 99999999999999987653 2467778888999999999999999998 5567889999999999999999999999
Q ss_pred ccCccccccccccCCCcCCCCCcccccccCCCCCCcchhhhhhccccccccCCCChhHHHHHHhcCCeeccccCccccCC
Q 001943 462 RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHN 541 (993)
Q Consensus 462 ri~~~f~~~~k~~~~R~Lhps~wG~iCPveTPEG~~cGLv~~LA~~a~V~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~ 541 (993)
|++++|++++|+++||+||||||||+||+|||||++|||+||||++|.||++.+++||.++|.++||++++...+...
T Consensus 483 rv~~p~~~~~K~~~~R~Lhpt~WG~iCP~eTPEG~~cGLvknLal~~~Isvg~~~~pI~~~l~~~gme~le~~~~~~~-- 560 (1210)
T 3h0g_B 483 RTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEEWGLETLEDYNPSAS-- 560 (1210)
T ss_dssp BBCCSCCSSCCSSSSSSCCGGGTTTCCCSCCCSSSSTTTSCBCCSSCCBCCCCCSSHHHHHHHSSSCCCCSCCCSSSS--
T ss_pred hccCchhhccccccccccChhhheeeccccCCCCCcccccccccceeeeECCCCcHHHHHHHHHhCCcchhhcCcccC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987665433
Q ss_pred CCceEEEECCeEeeeccChhhHHHHHHHHhhcCCcCceeEEEecccCceEEEecCCCeeeeeEEEeecC-------cccc
Q 001943 542 PNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG-------ISRI 614 (993)
Q Consensus 542 ~~~~~V~~nG~~iG~~~~~~~~~~~lR~~rr~g~i~~~v~i~~~~~~~~i~I~td~gR~~RPl~~v~~~-------~~~~ 614 (993)
++.++|||||+|||++++|..|+..||.|||.|.|+.+|||+++...++++||||+||++|||++|+|+ ++.+
T Consensus 561 ~~~tkVfvNG~wVGvh~dp~~Lv~~lR~lRR~g~Is~eVSIvrdir~rE~~IfTDaGRv~RPLfvVen~~~~~~~g~L~l 640 (1210)
T 3h0g_B 561 PNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCI 640 (1210)
T ss_dssp SSSCCCCSTTCCCCCCSCHHHHHHHHHHHHTTTSSCTTCCCCCCTTTCCCCCCCSSCCBCCEEEECCCSSCSSSSCCCSS
T ss_pred CCceEEEECCEEEEEeCCHHHHHHHHHHHhhcCCCCCceEEEecCCCCeEEEecCCCcccceEEEEccCCcccccccccc
Confidence 468899999999999999999999999999999999999999999999999999999999999999986 7999
Q ss_pred hhhhHHhhhcc----------CcchhhhhccCceeeeccccccceEEEeecCCCC-------------------------
Q 001943 615 KEHHMKELLDG----------VRSFDDFLREGLIEYLDVNEENNALIALYEGDAT------------------------- 659 (993)
Q Consensus 615 ~~~~~~~~~~~----------~~~~~~~l~~g~iE~id~~Eq~~~~Ia~~~~~~~------------------------- 659 (993)
+++|+++|..+ ..+|++|+++|+|||||++||++++|||+|+|+.
T Consensus 641 ~k~hi~~L~~~~~~~~~~~~~~~~w~~Lv~~GvIEylDaeEEet~mIamtpeDL~~~r~~~~g~~~~~~~d~~~r~k~~~ 720 (1210)
T 3h0g_B 641 RKEHIQQLIEDKDRYDIDPEQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVKPAP 720 (1210)
T ss_dssp CHHHHHHHHHHHTCCCSCTTCCCSSTTTTTTTSEEECCTTTGGGCCEESCHHHHHHHHHHTTCCCCCCSSCCSSCCCCCS
T ss_pred cHHHHHHHhcccccccccccccCCHHHHHhCCCEEEecHhhhhceeEEecHHHhhhhhhhhccccccccccchhhccccC
Confidence 99999988743 4799999999999999999999999999998762
Q ss_pred ----CCcceeeecCceeecccccccCCCCCCCCCcccccccccCCCccceeeeeccccccceeeecCCCcceeechhhhh
Q 001943 660 ----PDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIEL 735 (993)
Q Consensus 660 ----~~~th~Ei~p~~ilsv~AslIPF~~hNqspRn~yq~~M~KQa~G~~~~n~~~r~D~~~y~l~ypQ~PlV~t~~~~~ 735 (993)
..||||||||++|||++||+||||||||||||||||||+|||||++++|+..|+||++|+|+|||+|||+|+.++.
T Consensus 721 ~~~~~~~THcEIhPsmILGIcASiIPFpdHNQSPRNtYQ~aMgKQamG~~~~n~~~R~Dt~~~~L~yPQkPlv~T~~~e~ 800 (1210)
T 3h0g_B 721 NPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILYYPQKPLATTRSMEY 800 (1210)
T ss_dssp CCSCCSCSEECSCGGGSSCSSSTTSSSSTTSCSHHHHHHHHHHTTCCSCCCTTTTTSCCSSEEEESSCBCCSSBCTTSTT
T ss_pred CCcccccccccccchhhhhheeecccCccccccchhhhhhhhhcccccccccccccccCccccEeecCcCccccchhHHH
Confidence 3589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCceeEEEEEecCCCCCCCcEEEecccccccceeEEEEEEEEEEeecccCCccceecCCCCCCC---cchhcc
Q 001943 736 VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGP---GAERMQ 812 (993)
Q Consensus 736 ~~~~~~p~G~N~~VAv~~~~Gyn~EDaiiink~~~~rg~~~s~~~~~~~~~~~~~~~~~~e~~~~p~~~~~---~~~~~~ 812 (993)
++++++|+|+||+||||||+||||||||||||+|+|||+|||+||++|+++++++..+..|.|..|+.+.. ....|+
T Consensus 801 ~~~~elp~G~NaiVAvmsy~GYn~EDAiIink~sv~rg~~~s~~~~~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 880 (1210)
T 3h0g_B 801 LKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYD 880 (1210)
T ss_dssp TTCTTSCSCCEECBEECCCSSSSCSSCEEEEHHHHTTTTTCEEEEEEEEECCCCCSSSCCCCCCCCCTTSCCSCCSCCGG
T ss_pred hCCCcccCccceEEEEeccCCCChhhheeeehhheecCceEEEEEEEEEEEeeecCCCceeEEcCCCcchhcccchhhHh
Confidence 99999999999999999999999999999999999999999999999999998876666788888875321 123799
Q ss_pred cCCCCccccCCceeCCCCEEEEEecCCCCCCCCCCCCCCCCcccccceEEeeCCCCCceEEEEEEEeeCCCCCeEEEEEE
Q 001943 813 ILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLI 892 (993)
Q Consensus 813 ~ld~~Gi~~~g~~v~~gdili~k~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~e~~~~~v~~v~~~~~~~~~~~vkv~i 892 (993)
+||+||||++|++|++|||||||++|+......+. ++.+...++|+|++|+++| .|+||+|.++.+++|.+.|||++
T Consensus 881 ~LD~dGi~~~G~~v~~gDiligK~~p~~~~~~~~~-~~~~~~~~rd~s~~~~~~e--~g~Vd~V~~~~~~~g~~~vkv~~ 957 (1210)
T 3h0g_B 881 KLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELG-QRTQLHAKRDVSTPLRSTE--SGIVDQVMVTTNQEGLKFVKVRM 957 (1210)
T ss_dssp GCCTTSSCCTTCCCCTTCCCCCCCCCC------------CCCCCCCCCCCCCTTC--CCCCCEEEEEECSSSSEEEEEEE
T ss_pred hcCCCCCcCCCCEecCCCEEEEEecCCCCCchhhc-ccccccccceeeEEecCCC--CeEEEEEEEEEecCCCeEEEEEE
Confidence 99999999999999999999999999875432221 2234456799999999999 99999999999999999999999
Q ss_pred eeccCCCccccccccCCCcceeeeeecCCCCCCCCCCCcCeEEeCCCCCCCCCchhhhHHhhcccccccCCCceeeecCC
Q 001943 893 RHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFG 972 (993)
Q Consensus 893 r~~R~p~iGDKfasRHGqKGvvs~i~~~~DMPf~~~G~~pDiIiNPhg~PSRMtiGql~E~~~gk~~~~~G~~~d~TpF~ 972 (993)
|+.|+|++|||||||||||||||+|||+|||||++||++|||||||||||||||||||+|+++||||++.|.++|||||+
T Consensus 958 ~~~R~~~~GDK~a~RhGqKGvi~~i~~~edmPf~~~G~~pDii~NP~~~PSRMtigq~~E~~~g~~~~~~g~~~~~tpF~ 1037 (1210)
T 3h0g_B 958 RSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGFEGDATPFT 1037 (1210)
T ss_dssp CCCBCCCTTCEEECTTCCCEEEEEEECTTTSCCBTTTBCCSEECCGGGSTTSCCHHHHHHHHHHHHSSSSCCCCBCCSSC
T ss_pred EEecCCCchhhhhcccCCCceeeEEeccccCCcCCCCCCCeEEECCCcCCCCccchhhhHhHHHHHHHhcCCceeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHhhHhhhCCC
Q 001943 973 EPSGHADTVESIRCFFPC 990 (993)
Q Consensus 973 ~~~~~~~~~~~i~~~~~~ 990 (993)
+ .++++|+..|..
T Consensus 1038 ~-----~~~~~~~~~l~~ 1050 (1210)
T 3h0g_B 1038 D-----VTVEAVSKLLRS 1050 (1210)
T ss_dssp S-----CCHHHHHHHHHT
T ss_pred C-----CcHHHHHHHHHH
Confidence 9 999999987743
No 2
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Probab=100.00 E-value=2.7e-232 Score=2172.74 Aligned_cols=946 Identities=35% Similarity=0.599 Sum_probs=831.9
Q ss_pred CcccccccccccccccccchHHHHHHHHHHHHHhCHHHHHHhcCcccccCC-----------CcEEEEEeeEEEcCCeec
Q 001943 25 VKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGID-----------PSIFLRFKDVRIGQPSMT 93 (993)
Q Consensus 25 ~~~~~~~~~~i~~~~~~~~Lv~~hi~SFn~Fi~~gl~~ii~~~~~I~~~~~-----------~~~~l~f~~v~i~~P~~~ 93 (993)
.++.+++|.++++||+.++|++|||+|||||+++||+++++++++|+++.+ .++.|+|++++|++|++.
T Consensus 24 ~~~~~d~w~li~~~~~~~~Lv~~qidSFn~Fi~~gL~~iv~~~~~I~~~~~~~~~~~~~~~~~~~~l~f~~i~l~~P~~~ 103 (1224)
T 1twf_B 24 PITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVN 103 (1224)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHTHHHHHHHTTCBCC------------------CCEECCCEEEEEEEC
T ss_pred ccCHHHHHHhHHHHHcCccHHHHHHHHHHHHHHHhHHHHHHhcCceeecCcccccccccccceEEEEEEEEEEEeCCcee
Confidence 458899999999999999999999999999999999999999999975322 138899999999999998
Q ss_pred cCC-CCCCCChHHHHhcCCccCceEEEEEE--EEECCcccc---e-------e--eE--EeEEEEeeccceeccccccCC
Q 001943 94 VDG-VSEKLNPHMCRLSDMTYAAPILVNIE--YVQGSHTEK---T-------T--ME--KNDVVIGRIPIMLRSCRCVLY 156 (993)
Q Consensus 94 ~~~-~~~~l~P~EcR~r~lTYs~~l~v~v~--~~~~~~~~~---~-------~--i~--~~~v~iG~iPIMv~S~~C~L~ 156 (993)
+.+ ..++|||+|||+|++||+|||+|+|+ ++.++. .. . + ++ +++|++|+|||||||++|||+
T Consensus 104 e~~~~~~~l~P~EcRlR~lTYsapl~v~v~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~v~iG~iPIMlrS~~C~L~ 182 (1224)
T 1twf_B 104 ESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAID-VPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLS 182 (1224)
T ss_dssp CSSSCCEECCHHHHHHTTCCCEEEEECCEECCCCC--------------------------CCEEEEEECCTTSTTSGGG
T ss_pred ccCCccccCCHHHHhhcCCccceeEEEEEEEEEEeCCc-ccccccccccccccccccccceeeEeCCCCeEeccCcccCC
Confidence 776 77899999999999999999999994 432221 00 0 1 22 456999999999999999999
Q ss_pred CCCHHHHHhcCCCCCCCCcEEEEcCceeEEEEeecccCCEEEEEeCCCCc---eEEEEEecCCCc----ccEEEEEee--
Q 001943 157 GKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGN---INASVTSSTETV----KSKTVIQME-- 227 (993)
Q Consensus 157 ~~s~~el~~~gE~~~d~GGYFIInG~ERVI~~q~~~~~N~i~~~~~~~g~---~~~~v~s~~~~~----~~~~~~~~~-- 227 (993)
+++++||+++||||+|+||||||||+|||||+||++++|+|++++++++. |.+.++|...+. .+..+.+++
T Consensus 183 ~~s~~el~~~gEcp~D~GGYFIING~ERVIv~Qe~~s~N~i~~~~~~~~~~~~~~~~irsv~~~~~~~~~~~~l~~~~~~ 262 (1224)
T 1twf_B 183 EATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGRE 262 (1224)
T ss_dssp TCCHHHHHHTTCCTTCCCCSEEETTEEEEECEEEEECSSCCEEEECCTTSSEEEEEEEECCCSSSCCCCCEEEEEEESCS
T ss_pred CCCHHHHHhhccCccCCCCEEEEeCcEEEEEEeeeccCCeEEEEeccCCCcceEEEEEEEEeccCCcceeEEEEEEeccc
Confidence 99999999999999999999999999999999999999999998765433 677888754432 345555566
Q ss_pred ---CCEEEEEEccccccccHHHHHHHhCCCCHHHHHHHhC---CchhhHhhhhhhHHHHHhcCCcCHHHHHHHHhhh-cc
Q 001943 228 ---KGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECANLDIYTQEKALEYLEGK-VK 300 (993)
Q Consensus 228 ---~g~i~~~~~~~~~~IPl~ilLrALg~~sD~eI~~~i~---~~~~~~~~l~~~l~~~~~~~i~t~~~al~yIg~~-~~ 300 (993)
+|.+++++++++.+||+++||||||++||+||++.|+ +++.+.+.+..+|+++. .++|+++||+|||++ ++
T Consensus 263 ~~~~~~i~vr~~~~k~~IPi~illkALG~~sD~eI~~~i~~~~~d~~~~~~l~~~l~e~~--~~~t~~~AL~yIg~r~~~ 340 (1224)
T 1twf_B 263 GSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGF--VIQDRETALDFIGRRGTA 340 (1224)
T ss_dssp SCSSCCEEEECTTCSSCEEHHHHHHHTTCCSHHHHHHHHCCCTTCHHHHHHHHHHHHHTT--TCCSHHHHHHHHHHTTSC
T ss_pred cCCCCEEEEEEecccccccHHHHHHHhcCCCHHHHHHHhcccCCcHHHHHHHHHHHHHhh--hcCCHHHHHHHHHHhhcc
Confidence 7999999999878899999999999999999999996 77788899999998764 467999999999999 76
Q ss_pred cCCCCCCCCChHHHHHHHHhhhhcCCCCCCCCCCCcchhhHHHHHHHHHHhhcCCCCCCCcccccceEEcchHHHHHHHH
Q 001943 301 RSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLF 380 (993)
Q Consensus 301 ~~~~~~~~~~~~e~~~~~L~~~ll~Hl~~~~~~~~~K~~~L~~Mi~kLl~~~~g~~~~DD~D~l~nkRv~~~G~Ll~~lf 380 (993)
++ .++.. +.+.|+++|+++||||++.......+|++||++|++||+.+..|.+.+||+|||+||||+++|+||+.||
T Consensus 341 ~g--~~~~~-~~~~a~~iL~~~~l~Hvg~~~~~~~~K~~~L~~mi~kLl~~~~g~~~~DD~DhlgnkRv~l~G~Ll~~lf 417 (1224)
T 1twf_B 341 LG--IKKEK-RIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLF 417 (1224)
T ss_dssp TT--SCHHH-HHHHHHHHHHHTSSTTTCCSSSCHHHHHHHHHHHHHHHHHHHTTSSCCCCTTCGGGEEEECHHHHHHHHH
T ss_pred CC--CCCcc-HHHHHHHHHHhhcccccCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCccccccEEehhhHHHHHHH
Confidence 64 23445 7899999999999999998654456899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCCCCCCcccccccccccchhhhhhhhccCCCccc-ccccccccceEEeccccccccccc
Q 001943 381 EDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVK-RFKMHRKGMTQVLARLSFIGTLGH 459 (993)
Q Consensus 381 r~~l~~~~~~ik~~l~~~~~~~~~~~~~~~~~~i~~~~It~~i~~~~aTGnw~~~-~~~~q~sG~sq~l~r~N~ls~lsh 459 (993)
|..|+++++.++++|.+.+.+. ..+++..+++++.||++|++|||||||+.. .++++++|+||+|+|+||+|+|||
T Consensus 418 r~~~~r~~~~i~~~l~~~~~~~---~~~~~~~~i~~~~It~~lk~~~aTGNw~~~k~~~~~~sGvSQvldr~n~ls~LSH 494 (1224)
T 1twf_B 418 KTLFKKLTKDIFRYMQRTVEEA---HDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 494 (1224)
T ss_dssp HHHHHHHHHHHHHHHHSCCC-----------CCCCTHHHHHHHHHHHHHCCCC---------CCCEEECCCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc---cccchhhhhcccchhhcchhheeeccccccccccccccceeEeecccchhhhhhh
Confidence 9999999999999998765432 357788888999999999999999999854 456789999999999999999999
Q ss_pred ccccCccccccccccCCCcCCCCCcccccccCCCCCCcchhhhhhccccccccCCCChhHHHHHHhcCCeeccccCcccc
Q 001943 460 MTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEEL 539 (993)
Q Consensus 460 lRri~~~f~~~~k~~~~R~Lhps~wG~iCPveTPEG~~cGLv~~LA~~a~V~~~~~~~~i~~~l~~~g~~~~~~~~~~~~ 539 (993)
|||+|+++++++|.++||+||||||||+||+|||||++||||||||++|+|+++.++++|.++|.++||.+++..++...
T Consensus 495 ~RRi~~~~~r~~k~~~~R~LHpshwG~iCPiETPEG~~cGLVknLAl~a~Is~g~~~~pi~~~l~~~G~~~l~e~~~~~~ 574 (1224)
T 1twf_B 495 LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQS 574 (1224)
T ss_dssp HTEEECCC------CCTTSCCGGGTTTBCSSCCCSGGGBTTEEEBCTTCEECCCCCCHHHHHHHHHTTCEEGGGCCGGGC
T ss_pred hhcccccccccccccccccccCccceeecCCCCCCCcccchhhhHHhhCcccCCCCHHHHHHHHHHcCCcceeecccccC
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999886655443
Q ss_pred CCCCceEEEECCeEeeeccChhhHHHHHHHHhhcCCcCceeEEEecccCceEEEecCCCeeeeeEEEeecC------ccc
Q 001943 540 HNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKG------ISR 613 (993)
Q Consensus 540 ~~~~~~~V~~nG~~iG~~~~~~~~~~~lR~~rr~g~i~~~v~i~~~~~~~~i~I~td~gR~~RPl~~v~~~------~~~ 613 (993)
++.++||+||+|||++.+|..|+..||.+||.|.|+.+++++++...++++|+||+||++|||++|+|+ ++.
T Consensus 575 --~~~~kVfvnG~~vG~~~~p~~lv~~lr~lRR~g~i~~evsiv~d~r~~ei~I~TD~GRv~RPl~vV~~~~~~~~~~l~ 652 (1224)
T 1twf_B 575 --PDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELK 652 (1224)
T ss_dssp --TTCEEEEETTEEEEEESCHHHHHHHHHHHHHHTSSCTTCEEEEETTTTEEEEECCSCCEEEEEEEEECCCTTSSCEES
T ss_pred --CCceEEEECCEEEEEeCCHHHHHHHHHHHHhccCCCCeEEEEEecccCeEEEeccCceeeeeEEEecCCCccccccce
Confidence 368999999999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred chhhhHHhhhcc-------------CcchhhhhccCceeeeccccccceEEEeecCCCCC--------------------
Q 001943 614 IKEHHMKELLDG-------------VRSFDDFLREGLIEYLDVNEENNALIALYEGDATP-------------------- 660 (993)
Q Consensus 614 ~~~~~~~~~~~~-------------~~~~~~~l~~g~iE~id~~Eq~~~~Ia~~~~~~~~-------------------- 660 (993)
++++|++++..+ ..+|++|+++|.|||+|++||++++||++++++..
T Consensus 653 l~k~hi~~L~~~~~~~~~~~~~~~~~~~w~~Lv~~G~iEyldaeEEe~~~Ia~~~~dl~~~~~~~~~~~~~~~~~R~~~~ 732 (1224)
T 1twf_B 653 VRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVS 732 (1224)
T ss_dssp CCHHHHHHHHHHHHCC---------CCCHHHHHHTTSEEEEEHHHHTTCCEESSGGGGCC---------CCCTTSCCCCC
T ss_pred ecHHHHHHhhhccccccccccccccccchhHhccCCcEEEcChhhhcCcEEeccccccCcccccccccccccccccccCC
Confidence 999999988754 27999999999999999999999999999988754
Q ss_pred ----CcceeeecCceeecccccccCCCCCCCCCcccccccccCCCccceeeeeccccccceeeecCCCcceeechhhhhh
Q 001943 661 ----DTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736 (993)
Q Consensus 661 ----~~th~Ei~p~~ilsv~AslIPF~~hNqspRn~yq~~M~KQa~G~~~~n~~~r~D~~~y~l~ypQ~PlV~t~~~~~~ 736 (993)
.||||||||++||||+||+|||+||||||||||||||||||||++.+|+..|+|++.|+|+|||+|||+|+.++.+
T Consensus 733 ~~~~~~Th~EI~Ps~ILgV~ASlIPF~dHNqSpRn~yqs~M~kQA~g~~~~n~~~r~dt~~~~l~ypQkPlV~t~~~~~~ 812 (1224)
T 1twf_B 733 HHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYL 812 (1224)
T ss_dssp CCCSCCCEECSCGGGGSCTTGGGSSSGGGSCHHHHHHHHHHGGGBCBCSCTTTTTCCCSEEEEESSCBCCSEECTTHHHH
T ss_pred cCchhhcccccCCccccceeecccCCccccccchhhhcccccccccccccceeeeecccccceeecCcCCeEEccccccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeEEEEEecCCCCCCCcEEEecccccccceeEEEEEEEEEEeecccCCccceecCCCCC-C--Ccchhccc
Q 001943 737 GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRT-G--PGAERMQI 813 (993)
Q Consensus 737 ~~~~~p~G~N~~VAv~~~~Gyn~EDaiiink~~~~rg~~~s~~~~~~~~~~~~~~~~~~e~~~~p~~~-~--~~~~~~~~ 813 (993)
+++|+|+|+||+||||||+||||||||||||+|+|||+|||+||++|++++++...+..|.|..|+.+ . .....|++
T Consensus 813 ~~~elp~G~N~iVAvm~y~GYN~EDAiIin~~sv~rg~~~s~~~~~y~~~~~~~~~~~~e~~~~P~~~~~~~~~~~~~~~ 892 (1224)
T 1twf_B 813 KFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDK 892 (1224)
T ss_dssp TTTTSCCCEEEEEEECBSSSTTTTTEEEEEHHHHHTTTTCEEEEEEEEECCCCSCTTCCCEESCCCCSSSCBCCSSCGGG
T ss_pred ccccCCCCeeEEEEEecccCcccchhhhhhhhHHhcCCeeEEEEEEEEEEeeeCCCCceeEecCCChhhccCccHHHHhh
Confidence 99999999999999999999999999999999999999999999999999987655777888888652 1 12246999
Q ss_pred CCCCccccCCceeCCCCEEEEEecCCCCCCCCCCCCCCCCcccccceEEeeCCCCCceEEEEEEEeeCCCCCeEEEEEEe
Q 001943 814 LDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIR 893 (993)
Q Consensus 814 ld~~Gi~~~g~~v~~gdili~k~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~e~~~~~v~~v~~~~~~~~~~~vkv~ir 893 (993)
||+||||++|++|++|||||||++|+...+.... .+.+....+|+|++++++| .|+||+|+++++.+|.+.|||++|
T Consensus 893 LD~dGiv~~G~~V~~gDilvgK~~p~~~~~~~~~-~~~~~~~~rd~s~~~~~~e--~g~Vd~V~~~~~~~g~~~vkV~ir 969 (1224)
T 1twf_B 893 LDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELG-QRTAYHSKRDASTPLRSTE--NGIVDQVLVTTNQDGLKFVKVRVR 969 (1224)
T ss_dssp CCTTSBCCTTCEECTTCEEECEECCCC--------------CCBBCCEECCTTC--CEEEEEEEEEECSSSCEEEEEEEE
T ss_pred cccCCccCCccEecCCCEEEEEecCCCccccccc-cccccCccceeEEEeeCCC--CeEEEEEEEEecCCCCEEEEEEEE
Confidence 9999999999999999999999999875432221 1334456799999999999 999999999999999999999999
Q ss_pred eccCCCccccccccCCCcceeeeeecCCCCCCCCCCCcCeEEeCCCCCCCCCchhhhHHhhcccccccCCCceeeecCCC
Q 001943 894 HTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 973 (993)
Q Consensus 894 ~~R~p~iGDKfasRHGqKGvvs~i~~~~DMPf~~~G~~pDiIiNPhg~PSRMtiGql~E~~~gk~~~~~G~~~d~TpF~~ 973 (993)
++|+|+||||||||||||||||+|||+||||||+||++|||||||||||||||||||+|+++||||+++|.++|||||++
T Consensus 970 ~~R~p~iGDKfasRHGqKGvis~i~p~eDMPf~~dG~~pDiIiNPhg~PSRMtiGqllE~~lgka~~~~G~~~datpF~~ 1049 (1224)
T 1twf_B 970 TTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTD 1049 (1224)
T ss_dssp EEECCCTTCEEECTTSCEEEEEEEECTTTSCEETTSCCCSEEECGGGSTTTTCHHHHHHHHHHHHHHHHCSCEECCSSSS
T ss_pred ecCCCCchhhhhhhccCcceeeeecccccCCcCCCCCCccEEeCCCcCccccccchhHHHHhhHHHHhcCceeecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHhhHhhhCC
Q 001943 974 PSGHADTVESIRCFFP 989 (993)
Q Consensus 974 ~~~~~~~~~~i~~~~~ 989 (993)
.++++|+..|.
T Consensus 1050 -----~~~~~i~~~L~ 1060 (1224)
T 1twf_B 1050 -----ITVEGISKLLR 1060 (1224)
T ss_dssp -----CCHHHHHHHHH
T ss_pred -----ccHHHHHHHHH
Confidence 99999998764
No 3
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Probab=100.00 E-value=6.9e-212 Score=2001.43 Aligned_cols=938 Identities=35% Similarity=0.596 Sum_probs=848.4
Q ss_pred CCcccccccccccccccccchHHHHHHHHHHHHHhCHHHHHHhcCcccccCCCcEEEEEeeEEEcCCeeccCC-CCCCCC
Q 001943 24 PVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDG-VSEKLN 102 (993)
Q Consensus 24 ~~~~~~~~~~~i~~~~~~~~Lv~~hi~SFn~Fi~~gl~~ii~~~~~I~~~~~~~~~l~f~~v~i~~P~~~~~~-~~~~l~ 102 (993)
..++.+|+|.+|++||+.++||+|||||||||+++||++++++++||+.. .+++.|+|++++|++|++.+.+ ..+++|
T Consensus 6 ~~~~~~d~w~~i~~~f~~~gLV~~qidSfn~Fl~~gL~~i~~~~~pI~~~-~~~~~l~f~~~~l~~P~~~e~d~~~~~l~ 84 (1131)
T 4ayb_B 6 SNLSIDERWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTE-IPGLKVRLGKIRIGKPRVRESDRGEREIS 84 (1131)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHTTTHHHHHHHCSCCCS-STTCEEEEEEEEECCSEEEETTTEEEECC
T ss_pred ccCChhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCHHHHHHhcCCeeec-CCCEEEEEEEEEEeCCeeecCCCCcCccC
Confidence 67789999999999999999999999999999999999999999999654 4689999999999999998776 678899
Q ss_pred hHHHHhcCCccCceEEEEEEEEECCcccceeeEEeEEEEeeccceeccccccCCCCCHHHHHhcCCCCCCCCcEEEEcCc
Q 001943 103 PHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGT 182 (993)
Q Consensus 103 P~EcR~r~lTYs~~l~v~v~~~~~~~~~~~~i~~~~v~iG~iPIMv~S~~C~L~~~s~~el~~~gE~~~d~GGYFIInG~ 182 (993)
|+|||+|++||+|||+|++.+..++ .++++++|++|+|||||+|++|||++++++||++.||||+|+||||||||+
T Consensus 85 P~EcR~r~~TYsapl~v~v~~~~~~----~~~~~~~v~lG~iPiM~~S~~C~L~~~s~~el~~~gEc~~D~GGyFIING~ 160 (1131)
T 4ayb_B 85 PMEARLRNLTYAAPLWLTMIPVENN----IEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGS 160 (1131)
T ss_dssp HHHHHHHTCCCEEEEEEEEEEEETT----EECCCEEEEEEEEECCTTSTTSGGGGCCHHHHHHHTCCTTCCCCCEEETTE
T ss_pred HHHHHhcCCCccceEEEEEEEEECC----cEEEEEEEEEEECCEEeCCCcccCCCCCHHHHHhcCCCcCCCCcEEEeCCE
Confidence 9999999999999999999998876 566778999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeecccCCEEEEEeCCCC-c--eEEEEEecCCCc-ccEEEEEeeCCEEEEEEccccccccHHHHHHHhCCCCHHH
Q 001943 183 EKVLLIQEQLSKNRVIIDTDKKG-N--INASVTSSTETV-KSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQE 258 (993)
Q Consensus 183 ERVI~~q~~~~~N~i~~~~~~~g-~--~~~~v~s~~~~~-~~~~~~~~~~g~i~~~~~~~~~~IPl~ilLrALg~~sD~e 258 (993)
||||++|++++||.+++.+.+++ . +.|.++|++..+ ...++.+.++|.+++++++.+.+||+++||||||+.||+|
T Consensus 161 ERVIv~Q~~~spn~~~~~~~~~~~~~~~~a~ii~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~iPi~illrALG~~sD~e 240 (1131)
T 4ayb_B 161 ERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRD 240 (1131)
T ss_dssp EEEECEEEEECCSSCEEEECCTTCSEEEEEECEEECSSCEEECCEEEETTTCCEECCSSSCCCEEHHHHHHHHTCCSHHH
T ss_pred EEEEEEeeccCCCeEEEEeccCCCcEEEEEEEEECCCCceeeEEEEEeCCCEEEEEEcCcCceeeHHHHHHHhCCcchhh
Confidence 99999999999998888765443 3 568888876543 2344556789999999999877899999999999999999
Q ss_pred HHHHhCCchhhHhhhhhhHHHHHhcCCcCHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHhhhhcCCCCCCCCCCCcch
Q 001943 259 VVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKC 338 (993)
Q Consensus 259 I~~~i~~~~~~~~~l~~~l~~~~~~~i~t~~~al~yIg~~~~~~~~~~~~~~~~e~~~~~L~~~ll~Hl~~~~~~~~~K~ 338 (993)
|++.++.++++.+.+..+++++ ..+.++++||.|||++++.+ .+..+ ..+.|+++|++++|||++....++..|+
T Consensus 241 I~~~i~~~~~~~~~l~~~~~~~--~~i~~~~~al~~i~~r~~~~--~~~~~-~~~~a~~il~~~~l~hl~~~~~~~~~K~ 315 (1131)
T 4ayb_B 241 IVYAVSLDPEIQNELFPSLEQA--SSIANVDDALDFIGSRVAIG--QKREN-RIEKAQQIIDKYFLPHLGTSADDRRKKA 315 (1131)
T ss_dssp HHHHHCSCHHHHTTTHHHHHHH--TTTCCSSHHHHHHHHHHHCS--SCHHH-HHHHHHHHHHTTSSTTSCSSTTSHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHh--cccccHHHHHHHHhhhhhcC--CCCch-hHHHHHHHHHHhhcccccccccchhHHH
Confidence 9999987777777777777665 36789999999999999886 22334 6789999999999999998877788899
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCcccccceEEcchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCccccccccccc
Q 001943 339 FYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDS 418 (993)
Q Consensus 339 ~~L~~Mi~kLl~~~~g~~~~DD~D~l~nkRv~~~G~Ll~~lfr~~l~~~~~~ik~~l~~~~~~~~~~~~~~~~~~i~~~~ 418 (993)
.+|++|++||+.+..|.+.+||+|||+||||+++|+||++|||.+|.++++.+++++.+...+. ..+++..+++++.
T Consensus 316 ~~L~~mi~~Ll~l~~g~~~~DD~Dhl~NkRvr~vGeLl~~~fr~~l~r~~r~ir~~~~~~~~~~---~~~~~~~li~~~~ 392 (1131)
T 4ayb_B 316 YYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRG---RKLALKALVRPDI 392 (1131)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCCTTSGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTC---SCCCHHHHCCTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCcchhcceecchhHHHHHHHHHHHHHHHHHhhhhcccchhcc---cccchhhhcCCch
Confidence 9999999999999999999999999999999999999999999999999999999998864332 3467788889999
Q ss_pred chhhhhhhhccCCCcccccccccccceEEecccccccccccccccCccccccccccCCCcCCCCCcccccccCCCCCCcc
Q 001943 419 ITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEAC 498 (993)
Q Consensus 419 It~~i~~~~aTGnw~~~~~~~q~sG~sq~l~r~N~ls~lshlRri~~~f~~~~k~~~~R~Lhps~wG~iCPveTPEG~~c 498 (993)
||++|++|||||||.. +++|+||+|+|+||||+|||+||+++++++++|.++||+|||||||||||+|||||+||
T Consensus 393 it~~i~~~~aTGn~~~-----~~sglSQ~mdq~NpLs~lsH~RRlsagl~rera~~evRdlHpShyGriCPIETPEG~ni 467 (1131)
T 4ayb_B 393 VTERIRHALATGNWVG-----GRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEGPNS 467 (1131)
T ss_dssp HHHHHHHHHHTTBCSS-----SCBCCEEECCCSSHHHHHHHHTEEEECSCSSSCCHHHHSCCGGGTTTBCSSCCCSSTTB
T ss_pred hhhhhHHHHhhccccc-----CCCceEEEeccCCHHHHHHhhhhhcCCcccccccccccccCHhhccccccccCCCCccc
Confidence 9999999999999962 67999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccccCCCChhHHHHHHhcCCeeccc----cCcccc---CCCCceEEEECCeEeeeccChhhHHHHHHHHh
Q 001943 499 GLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLEL----LSGEEL---HNPNSFLVIFNGLILGKHRRPKCFADVMRKLR 571 (993)
Q Consensus 499 GLv~~LA~~a~V~~~~~~~~i~~~l~~~g~~~~~~----~~~~~~---~~~~~~~V~~nG~~iG~~~~~~~~~~~lR~~r 571 (993)
|||+|||++|+|+.+.++.++.+++.++|+.+++. ++.... .......|++||.|+|++.++..++..+|.+|
T Consensus 468 GLI~sLA~~a~I~~g~~e~~i~~~l~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~v~lng~~vg~~~~~~~~~~~~~~~~ 547 (1131)
T 4ayb_B 468 GLVKNLALMAQIAVGINEKIVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDGEELAKKIRERR 547 (1131)
T ss_dssp TTEEEBBSSCEECCCCCHHHHHHHHHHTTCEEHHHHHHTTTTC-----CCCCCCEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred cccccceeeEEEecCCCCcceeeehhhcCceeeeeeehhhcccccccchhhhhcceeecCceEEEeccchhhhhhhhhhh
Confidence 99999999999998899999999999999987652 221110 01134579999999999999999999999999
Q ss_pred hcCCcCceeEEEec--ccCceEEEecCCCeeeeeEEEeecCcccchhhhHHhhhccCcchhhhhccCceeeeccccccce
Q 001943 572 RAGKIGEFVSVFVN--EKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNA 649 (993)
Q Consensus 572 r~g~i~~~v~i~~~--~~~~~i~I~td~gR~~RPl~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~iE~id~~Eq~~~ 649 (993)
+.|.++.+++|.+. +..+++++++|+||++|||++++++++.++.++++.+..+..+|.++++.|.|||+|++|++++
T Consensus 548 ~~~~i~~~vsi~~~~~~~~~~~~i~~d~~r~~rpv~~~~~~~p~v~~~~~~~~~~g~~~~~~~~~~g~veyvd~~e~~~~ 627 (1131)
T 4ayb_B 548 RKGEISDEVNVGHIVTDFINEVHVNCDSGRVRRPLIIVSNGNPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENA 627 (1131)
T ss_dssp HHTSSCTTCEEEEECTTTCCEEEEECCTTCEEEEEEEBSSSSBSCCHHHHHHHHTTTCCHHHHHHTTSEEEEEHHHHTTC
T ss_pred ccCccCceEEEeeccccccceeeeecCCcccccceEEeecccccccHHHHHHHhcCChhHHHHhhCCceeeeecccccee
Confidence 99999999998764 3458899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCcceeeecCceeecccccccCCCCCCCCCcccccccccCCCccceeeeeccccccceeeecCCCcceee
Q 001943 650 LIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLT 729 (993)
Q Consensus 650 ~Ia~~~~~~~~~~th~Ei~p~~ilsv~AslIPF~~hNqspRn~yq~~M~KQa~G~~~~n~~~r~D~~~y~l~ypQ~PlV~ 729 (993)
+||+.++++...+||+||+|+.++|++|++|||++|||||||+|||||+|||||.+.+|+..|+|++.|+|+|||+|||+
T Consensus 628 ~ia~~~~~~~~~~th~ei~p~~il~v~a~lipf~~~NqspRn~yq~~m~KQa~G~~~~~~~~r~D~~~~~l~ypQ~PlV~ 707 (1131)
T 4ayb_B 628 YVALEPSDLTPEHTHLEIWSPAILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQ 707 (1131)
T ss_dssp CEESSGGGCCTTCSEECSCGGGGSBTTGGGCSSGGGSCHHHHHHHHHHGGGBCSCCCGGGGTCCCSEEEEESSCCCCSSB
T ss_pred EEEeecccccccccceeeccccccccccceecccccCccchheeccccccccCCceeecceeeeccccceeecCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhCCCCCCCCceeEEEEEecCCCCCCCcEEEecccccccceeEEEEEEEEEEeecccCCccceecCCCCCC---C
Q 001943 730 TRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTG---P 806 (993)
Q Consensus 730 t~~~~~~~~~~~p~G~N~~VAv~~~~Gyn~EDaiiink~~~~rg~~~s~~~~~~~~~~~~~~~~~~e~~~~p~~~~---~ 806 (993)
|+.++.++++++|+|+|++||||||+||||||||||||++++||+|||+||++|++++++++.|..|.++.|..+. .
T Consensus 708 t~~~~~~~~~e~p~G~N~lVA~m~w~GYN~EDAIIine~~v~rg~ftSihi~~y~~e~r~~~~g~~e~it~~~p~v~~~~ 787 (1131)
T 4ayb_B 708 TRALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPEPGVRGYK 787 (1131)
T ss_dssp CHHHHHHTCTTSCCSEEEEEEECCCSSCCCTTCEEEEHHHHTTTTTCEEEEEEEEEECCCCTTSCCCCCCCCCSSCSSCC
T ss_pred cchhhhhccCCCCCceeEEEEEEccCCccHHHhhhhhcchhhcccceeeEEEEEEEEEEecCCCCceEEecCCccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999888888777644322 2
Q ss_pred cchhcccCCCCccccCCceeCCCCEEEEEecCCCCCCCCCCCCCCCCcccccceEEeeCCCCCceEEEEEEEeeCCCCCe
Q 001943 807 GAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDL 886 (993)
Q Consensus 807 ~~~~~~~ld~~Gi~~~g~~v~~gdili~k~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~e~~~~~v~~v~~~~~~~~~~ 886 (993)
+...+++||+||||++|++|++|||||||++|+...+.....++ ....+|+|++++++| .|+||.|.++.+.++++
T Consensus 788 ~~~~~~~LDe~Gii~iGa~V~~gDilvGKvtP~~~~~~~~~~~~--~~~~~d~sl~~~~g~--~g~Vd~v~~~~~~~~~~ 863 (1131)
T 4ayb_B 788 GKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSP--EQAKRDTSIVTRHGE--MGIVDLVLITETAEGNK 863 (1131)
T ss_dssp CGGGGTTCCTTSBCCTTCEECTTCEEECCCCCCC-------------CCCCCCCEECCTTC--CEEEEEEEEEECSSSCE
T ss_pred hHHHhhcCCccccccCCcEecCCCEEEEEecCCcchhhhhhcCc--ceeeeeeeEEccCCC--ceEEEEEEEeeccCCce
Confidence 44689999999999999999999999999999865432111111 223589999999999 99999999999999999
Q ss_pred EEEEEEeeccCCCccccccccCCCcceeeeeecCCCCCCCCCCCcCeEEeCCCCCCCCCchhhhHHhhcccccccCCCce
Q 001943 887 CIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 966 (993)
Q Consensus 887 ~vkv~ir~~R~p~iGDKfasRHGqKGvvs~i~~~~DMPf~~~G~~pDiIiNPhg~PSRMtiGql~E~~~gk~~~~~G~~~ 966 (993)
.|||++|+.|+|+||||||||||||||||+|||+|||||++||++|||||||||||||||||||+|+++||||+++|.++
T Consensus 864 ~vkV~i~~~R~~~vGDK~agRHGnKGvvs~i~p~eDMPf~~dG~~~DiilNP~gvPSRMniGqilE~~~gk~~~~~g~~~ 943 (1131)
T 4ayb_B 864 LVKVRVRDLRIPSIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAALSGNIV 943 (1131)
T ss_dssp EEEEEEEEEECCCTTCEEEETTSCEEEEEEEECTTTSEEETTSCCCSEECCTTSSTTTTCHHHHHHHHHHHHHHHHCCCC
T ss_pred EEEEEEeccccCcccccccccccccceeeeecccccCCcCCCCCCccEEECCCCCcccCcHHHHHHHHHHHHHHhCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCHhhHhhhC
Q 001943 967 YGSAFGEPSGHADTVESIRCFF 988 (993)
Q Consensus 967 d~TpF~~~~~~~~~~~~i~~~~ 988 (993)
|||||.. ..++++...+
T Consensus 944 ~atpf~~-----~~~e~~~~~l 960 (1131)
T 4ayb_B 944 DATPFYK-----TPIEQLQNEI 960 (1131)
T ss_dssp BCCTTSS-----CCTHHHHHHH
T ss_pred ecCccCC-----CcHHHHHHHH
Confidence 9999988 6777776654
No 4
>2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.1 PDB: 1smy_C* 1zyr_C* 1iw7_C* 2a69_C* 2a6e_C 2a68_C* 2be5_C* 2cw0_C 2o5i_C 2o5j_C* 2ppb_C* 3aoh_C* 3aoi_C* 3dxj_C* 3eql_C* 1ynj_C* 1ynn_C* 2gho_C 1hqm_C 1l9u_C ...
Probab=100.00 E-value=3.4e-178 Score=1645.93 Aligned_cols=797 Identities=22% Similarity=0.361 Sum_probs=659.9
Q ss_pred cccccccccccccccchHHHHHHHHHHHH----------HhCHHHHHHhcCccccc--CCCcEEEEEeeEEEcCCeeccC
Q 001943 28 VVDKFQLLPEFLKVRGLVKQHLDSFNYFV----------NTGIRKIVRANDRIVSG--IDPSIFLRFKDVRIGQPSMTVD 95 (993)
Q Consensus 28 ~~~~~~~i~~~~~~~~Lv~~hi~SFn~Fi----------~~gl~~ii~~~~~I~~~--~~~~~~l~f~~v~i~~P~~~~~ 95 (993)
++.+|+.++++|+.++|+++|++|||||+ ++||++++++++||+.+ .++++.|+|.+++|++|.+
T Consensus 2 ~r~~~~~~~~~~~~p~Lv~~QidSFn~Fl~~~~~~~~~~~~GL~~i~~~~~pI~~~~~~~~~~~l~f~~~~l~~P~~--- 78 (1119)
T 2a6h_C 2 EIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDFLEYRLGEPPF--- 78 (1119)
T ss_dssp EEEECCCCCCCSCCCCTTHHHHHHHHHHSCTTSCTTSSCCCHHHHHHHHHCSEEECCSSSCCEEEEECCCCBCCCSS---
T ss_pred cceecccccccccCcCHHHHHHHHHHHHHccCCccccchhhhHHHHHHhcCCEeccCCCCCeEEEEEEEEEEcCCCC---
Confidence 36789999999999999999999999999 99999999999999764 4578999999999999986
Q ss_pred CCCCCCChHHHHhcCCccCceEEEEEEEEECCcccceeeEEeEEEEeeccceeccccccCCCCCHHHHHhcCCCCCCCCc
Q 001943 96 GVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGG 175 (993)
Q Consensus 96 ~~~~~l~P~EcR~r~lTYs~~l~v~v~~~~~~~~~~~~i~~~~v~iG~iPIMv~S~~C~L~~~s~~el~~~gE~~~d~GG 175 (993)
+|+|||+|++||+|||+|+++++.++. +++++++|++|+||||+ +||
T Consensus 79 ------~p~Ecr~r~lTYsapL~V~v~l~~~~~---~~ik~~~V~iG~iPiMt------------------------~gG 125 (1119)
T 2a6h_C 79 ------PQDECREKDLTYQAPLYARLQLIHKDT---GLIKEDEVFLGHIPLMT------------------------EDG 125 (1119)
T ss_dssp ------CHHHHHHTTCCCEEEBCCCEEECCSSS---CCEECCCCCCCEEECCC------------------------TTS
T ss_pred ------CHHHHHhcCCcccceEEEEEEEEECCC---ceeeeeEEEecCCCeEC------------------------CCc
Confidence 799999999999999999999986542 45566689999999999 799
Q ss_pred EEEEcCceeEEEEeecccCCEEEEEe-CCCCc--eEEEEEecCCCcccEEEEEeeCCEEEEEEccccccccHHHHHHHhC
Q 001943 176 YFIIKGTEKVLLIQEQLSKNRVIIDT-DKKGN--INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMG 252 (993)
Q Consensus 176 YFIInG~ERVI~~q~~~~~N~i~~~~-~~~g~--~~~~v~s~~~~~~~~~~~~~~~g~i~~~~~~~~~~IPl~ilLrALg 252 (993)
||||||+||||++|++++||.++... ++.|. |.+.+.+.+. .|..+..++++.+|+++++ .+||+++||||||
T Consensus 126 yFIING~ERVIVsQ~~rspgv~~~~~~~~~g~~~ysa~ii~~rg--s~l~~~~d~~~~i~vri~r--~kIPi~ilLrALG 201 (1119)
T 2a6h_C 126 SFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPKRG--PWIDLEVEPNGVVSMKVNK--RKFPLVLLLRVLG 201 (1119)
T ss_dssp CCCSSSSCEEECEEEEECSCEEEECCSSCSSCCEEEECCCSSSS--CCEEEEEETTTEEEEESSS--SEECHHHHHHHHT
T ss_pred EEEEeCeEEEEEEEEecCCcEEEEeeccCCCceEEEEEEEeccC--ceEEEEEcCCCEEEEEEeC--cceeHHHHHHHHC
Confidence 99999999999999999999555332 23453 5677766543 5666666789999999999 6899999999999
Q ss_pred CCCHHHHHHHhCCchhhHhhhhhhHHHHHhcCCcCHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHhhhh-------cC
Q 001943 253 MESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVF-------LA 325 (993)
Q Consensus 253 ~~sD~eI~~~i~~~~~~~~~l~~~l~~~~~~~i~t~~~al~yIg~~~~~~~~~~~~~~~~e~~~~~L~~~l-------l~ 325 (993)
+ ||+||++.|+.++.+.+.+.... ..+.++++|+.||+++++++ ... ..+.|+.+|.+.| |+
T Consensus 202 ~-sD~eIl~~~~~~~~~~~tl~~d~-----~~~~~~~eAl~~i~~~lr~g----~~~-~~e~a~~~l~~~ff~~~rydl~ 270 (1119)
T 2a6h_C 202 Y-DQETLARELGAYGELVQGLMDES-----VFAMRPEEALIRLFTLLRPG----DPP-KRDKAVAYVYGLIADPRRYDLG 270 (1119)
T ss_dssp C-CHHHHHHHHHSSCTTHHHHSSCH-----HHHTCHHHHHHHHHHHSSSC----CCS-CCSSHHHHHTSSSSSSCCSCTT
T ss_pred C-CHHHHHHHHccCHHHHHHHHhhh-----cccCCHHHHHHHHHHHhcCC----CCC-cHHHHHHHHHHhhCCcccccch
Confidence 9 99999999976554444332210 01458999999999999886 234 5677899999988 67
Q ss_pred CCCCCCCC------------------CCcchhhHHHHHHHHHHhhcCCC--CCCCcccccceEEcchHHHHHHHHHHHHH
Q 001943 326 NVPVHNNN------------------FRPKCFYVAVMLRRMVEAMLNKD--AMDDKDYVGNKRLELSGQLVSLLFEDLFK 385 (993)
Q Consensus 326 Hl~~~~~~------------------~~~K~~~L~~Mi~kLl~~~~g~~--~~DD~D~l~nkRv~~~G~Ll~~lfr~~l~ 385 (993)
|+|..+.+ ...| ..+++|++||+.+..|.+ .+||+|||+||||+++|+||+.+||..|.
T Consensus 271 ~vGr~~ln~kl~l~~~~~~~~~~~~~~l~~-~di~~mi~~Ll~l~~G~~~~~~DD~DhlgNkRv~~~GeLl~~~fr~~l~ 349 (1119)
T 2a6h_C 271 EAGRYKAEEKLGIRLSGRTLARFEDGEFKD-EVFLPTLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLA 349 (1119)
T ss_dssp TSSHHHHHTTSCSCCSTTTTCCCSSSCCCC-TTHHHHHHHHHHHHTSCSSCCCCCTTSTTTEEEECHHHHHHHHHHHHHH
T ss_pred hcchhhhhhhhccCCccccccccccccccH-HHHHHHHHHHHHhhcCCCCCCCcCcchhhceEehhhhHHHHHHHHHHHH
Confidence 87632100 1112 335779999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhcCCCCCCCcccccccccccchhhhhhhhccCCCcccccccccccceEEecccccccccccccccCc
Q 001943 386 TMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSP 465 (993)
Q Consensus 386 ~~~~~ik~~l~~~~~~~~~~~~~~~~~~i~~~~It~~i~~~~aTGnw~~~~~~~q~sG~sq~l~r~N~ls~lshlRri~~ 465 (993)
++.+.+++++.+. ....+++..+++++.||++|++||+||| +||+|+|+||+|+|||+||+++
T Consensus 350 r~~~~i~~~~~~~-----~~~~~~~~~~i~~~~It~~lk~ff~tg~------------lSQ~Ldq~N~ls~LsH~RRiss 412 (1119)
T 2a6h_C 350 RLARGVRERMLMG-----SEDSLTPAKLVNSRPLEAAIREFFSRSQ------------LSQFKDETNPLSSLRHKRRISA 412 (1119)
T ss_dssp HHHHHHHHHHHHS-----CSSCCSSTTTCCSHHHHHHHHHHHHTCS------------SEEECCCSSTHHHHHHHHEEES
T ss_pred HHHHHHHHHhhhh-----cccccchHHhhccchhHHHHHHHhhccC------------ccccccccchHhhhhhhheecc
Confidence 9999999999763 1234677788899999999999999986 4789999999999999999975
Q ss_pred ----cccccccccCCCcCCCCCcccccccCCCCCCcchhhhhhccccccccCCCChhHHHHHHhcCCeeccccCccccCC
Q 001943 466 ----QFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHN 541 (993)
Q Consensus 466 ----~f~~~~k~~~~R~Lhps~wG~iCPveTPEG~~cGLv~~LA~~a~V~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~ 541 (993)
++++++|+++||+||||||||+||+|||||+|||||||||++|+|+. +|+.+
T Consensus 413 lgpggl~re~k~~~vRdlHpShwGriCPiETPEG~ncGLVknLAl~a~I~~-------------~G~~e----------- 468 (1119)
T 2a6h_C 413 LGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDE-------------LGFIR----------- 468 (1119)
T ss_dssp SSSSSSCCSSCCHHHHSCCGGGTTTBCSSCSCSSSSCSSEEEBCSSCEECS-------------SSCEE-----------
T ss_pred cCCCccccccccCcccccCHhhCcccCCCcCCCCCcccchhhhhhheeecc-------------cCccc-----------
Confidence 58999999999999999999999999999999999999999999984 34432
Q ss_pred CCceEEEECCeEeeeccChhhHHHHHHHHhhcCCcCceeEEEecccCceEEEecCCCeeeeeEEEeecCcccchhhhHHh
Q 001943 542 PNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKE 621 (993)
Q Consensus 542 ~~~~~V~~nG~~iG~~~~~~~~~~~lR~~rr~g~i~~~v~i~~~~~~~~i~I~td~gR~~RPl~~v~~~~~~~~~~~~~~ 621 (993)
..+.+.+||+|.+.+..-.+.. ... .-|. ...+.+ |.||++||++.++++
T Consensus 469 -~p~~~V~nG~v~~~i~yl~a~e-------e~~-----~~i~----~~~~~l--~~gr~~r~~i~~r~~----------- 518 (1119)
T 2a6h_C 469 -TPYRRVVGGVVTDEVVYMTATE-------EDR-----YTIA----QANTPL--EGNRIAAERVVARRK----------- 518 (1119)
T ss_dssp -EEEEEEETTEEEEEEEEECHHH-------HHH-----SCEE----CTTSCB--SSSBBCCSSEEEESS-----------
T ss_pred -CCcEEEECCEEeeeeEEeChhc-------ccc-----eEEe----cCceee--cCCccccCceeEEec-----------
Confidence 1233446999864322100000 000 0111 111222 459999999886631
Q ss_pred hhccCcchhhhhccCceeeeccccccceEEEeecCCCCCCcceeeecCceeecccccccCCCCCCCCCcccccccccCCC
Q 001943 622 LLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQA 701 (993)
Q Consensus 622 ~~~~~~~~~~~l~~g~iE~id~~Eq~~~~Ia~~~~~~~~~~th~Ei~p~~ilsv~AslIPF~~hNqspRn~yq~~M~KQa 701 (993)
-||+ .+.+ ..+|||||+|++|||++||+|||+||||||||||||||||||
T Consensus 519 ----------------~e~~----------~~~~----~~~~~~ei~P~~ilsv~aslIPF~ehn~s~R~lmgsnM~kQA 568 (1119)
T 2a6h_C 519 ----------------GEPV----------IVSP----EEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNMQTQA 568 (1119)
T ss_dssp ----------------SSEE----------EECT----TTCCEEECCTTTTSCHHHHTCTTGGGBCHHHHHHHHHHHTTB
T ss_pred ----------------ccee----------eech----hHeEEEEeccccccccccccCCCcccCCCccccccccccccc
Confidence 1222 1222 236999999999999999999999999999999999999999
Q ss_pred ccceee-----------------------------------eeccccc---cceeee----------cCCCcceeechhh
Q 001943 702 MGNIAF-----------------------------------NQLCRMD---SLLYLL----------VYPQRPLLTTRTI 733 (993)
Q Consensus 702 ~G~~~~-----------------------------------n~~~r~D---~~~y~l----------~ypQ~PlV~t~~~ 733 (993)
||++.+ ++..|.| ++.|.| ||||+|||+++.+
T Consensus 569 v~l~~~~~p~vgTg~e~~~a~ds~~~~~a~~~G~v~~vd~~~i~ir~~~~~~~~y~L~~~~rsnq~t~~~QkPiV~~g~~ 648 (1119)
T 2a6h_C 569 VPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQR 648 (1119)
T ss_dssp CCBSSCCCCSEECSCHHHHHHHTTCSEECSSSEEEEEECSSBEEEEETTTEEECCBCCCSEECTTSCEECCEECCCSSCC
T ss_pred ccccccCCCeeeccccceeeeccCceeEeccCCEEEEecCceEEEEccCCcceeEEeeccccccccccccccceEeeCce
Confidence 988654 2345653 467876 8999999999864
Q ss_pred ----h------hhCCCCCCCCceeEEEEEecCCCCCCCcEEEecccccccceeEEEEEEEEEEeecccCCccceec-CCC
Q 001943 734 ----E------LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRIL-RPD 802 (993)
Q Consensus 734 ----~------~~~~~~~p~G~N~~VAv~~~~Gyn~EDaiiink~~~~rg~~~s~~~~~~~~~~~~~~~~~~e~~~-~p~ 802 (993)
+ .++++|+|+|+|++||||||+||||||||||||++++||+|||+|+++|++++++++.|.+|.+. .|+
T Consensus 649 v~~g~~ladg~~~~~gel~lG~N~lVA~m~~~GYN~EDAiiine~~v~rg~~tSihi~~~e~~~r~~~~g~eeit~~ip~ 728 (1119)
T 2a6h_C 649 VRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIPH 728 (1119)
T ss_dssp BCTTCEEEECTTBSSSSBCCSEEEEEECSCCSSTTSSSEEEEETHHHHTTCSEEEEEEEEEEEEECCTTCCCBCCSCCSS
T ss_pred eeccceeccccccCCCcccCceeEEEEEecccCCcchhhhhhhhhHHhcCCceEEEEEEEEeeeeecCCCceeeeccCCC
Confidence 2 36789999999999999999999999999999999999999999999999999988777666443 365
Q ss_pred CCCCcchhcccCCCCccccCCceeCCCCEEEEEecCCCCCCCCCC------CCCCCCcccccceEEeeCCCCCceEEEEE
Q 001943 803 RTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS------PTGQTDSRYRSARQTYKGPDGETCVVDRV 876 (993)
Q Consensus 803 ~~~~~~~~~~~ld~~Gi~~~g~~v~~gdili~k~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~~e~~~~~v~~v 876 (993)
.. ...|++||+||||++|++|++|||||||++|+.+.+.... -++.+....+|+|++++++| .|+|++|
T Consensus 729 ~~---~~~~~~LD~dGiv~iG~~V~~gDiLvgK~tP~~~~~~~~ee~ll~aifg~k~~~~rd~Sl~~~~~e--~G~V~~V 803 (1119)
T 2a6h_C 729 LS---EAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGE--GGIVVRT 803 (1119)
T ss_dssp SC---SGGGSSCCSSSBCCTTCBCCTTSEEECCEEESSSSSCCHHHHHHHHHHHSCCCCEEECCEECCSSC--CCEEEEE
T ss_pred cc---hhhhhccCCCcccCCCCEECCCCEEEEEecCCccccCChhhhhhhhhhcccccccceeeEEccCCc--cEEEEEE
Confidence 43 2578999999999999999999999999999876443211 02344556899999999999 9999999
Q ss_pred EEeeCCC-CC-------eEEEEEEeeccCCCccccccccCCCcceeeeeecCCCCCCCCCCCcCeEEeCCCCCCCCCchh
Q 001943 877 ALCSDKN-GD-------LCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVG 948 (993)
Q Consensus 877 ~~~~~~~-~~-------~~vkv~ir~~R~p~iGDKfasRHGqKGvvs~i~~~~DMPf~~~G~~pDiIiNPhg~PSRMtiG 948 (993)
.++.+++ |. +.|||++|+.|+|+||||||||||||||||+|||+|||||++||++|||||||||||||||||
T Consensus 804 ~~~~~~~~g~~l~~~~~~~vkV~i~~~R~~~vGDKfasRHGqKGVis~i~p~eDMPf~~dG~~pDiIlNPhgvPSRMtiG 883 (1119)
T 2a6h_C 804 VRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLG 883 (1119)
T ss_dssp EEECSSCSSCCCCTTEEEEEEEEEEEEEECCTTCEEECTTSCEEEEEEEECTTTSCBCSSSCBCSEECCSTTTTTTTBTH
T ss_pred EEEccCCCCcccCCCcceEEEEEEcccCCcccCchhhhccCCCceEEeeeccCCCccccCCCCccEEeCCCcCccccchh
Confidence 9998766 53 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhcccccccCCCceeeec-CCCCCCCCCCHhhHhhhC
Q 001943 949 KMIELLGGKAGVSCGRFHYGSA-FGEPSGHADTVESIRCFF 988 (993)
Q Consensus 949 ql~E~~~gk~~~~~G~~~d~Tp-F~~~~~~~~~~~~i~~~~ 988 (993)
||+|+++||||+++|..+ ||| |++ .++++|+..|
T Consensus 884 qllE~~lG~a~~~~g~~~-atp~F~~-----~~~~~i~~~L 918 (1119)
T 2a6h_C 884 QILETHLGLAGYFLGQRY-ISPIFDG-----AKEPEIKELL 918 (1119)
T ss_dssp HHHHHHHHHHHHHTTEEE-ECCTTTS-----CCHHHHHHHH
T ss_pred hhhHHHhhhHHhhcCCce-EecccCC-----CCHHHHHHHH
Confidence 999999999999999754 999 999 8999988765
No 5
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_C*
Probab=100.00 E-value=9.4e-164 Score=1496.88 Aligned_cols=791 Identities=21% Similarity=0.362 Sum_probs=638.4
Q ss_pred CCcccccccccccccccccchHHHHHHHHHHHHH------hCHHHHHHhcCcccccCCCcEEEEEeeEEEcCCeeccCCC
Q 001943 24 PVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVN------TGIRKIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGV 97 (993)
Q Consensus 24 ~~~~~~~~~~~i~~~~~~~~Lv~~hi~SFn~Fi~------~gl~~ii~~~~~I~~~~~~~~~l~f~~v~i~~P~~~~~~~ 97 (993)
...+.+.+|+.++..++.++|+++|++||+||++ +||++++++++||+ +.++++.|+|.+|++++|.+.
T Consensus 7 ~~~~~R~~f~k~~~~~~~P~Ll~iQ~~Sf~~Fl~~~~r~~~GL~evf~~~fPI~-d~~~~~~Lef~~y~l~~Pk~~---- 81 (1342)
T 3lu0_C 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ-SYSGNSELQYVSYRLGEPVFD---- 81 (1342)
T ss_dssp -CCCCCCCSSCCCCSSCCCCGGGTTHHHHHHHSCSSSCSCSTTHHHHTTTSSCE-ETTTTEECCEEEECCCCCSCC----
T ss_pred CCceeEeccccCCcCCCCCCHHHHHHHHHHHHHcCCccccchHHHHHHhcCCEE-CCCCCEEEEEeeEEeCCCCCC----
Confidence 4456788999999999999999999999999997 89999999999996 456789999999999999884
Q ss_pred CCCCChHHHHhcCCccCceEEEEEEEEECCc---c-cceeeEEeEEEEeeccceeccccccCCCCCHHHHHhcCCCCCCC
Q 001943 98 SEKLNPHMCRLSDMTYAAPILVNIEYVQGSH---T-EKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDP 173 (993)
Q Consensus 98 ~~~l~P~EcR~r~lTYs~~l~v~v~~~~~~~---~-~~~~i~~~~v~iG~iPIMv~S~~C~L~~~s~~el~~~gE~~~d~ 173 (993)
+.|||+|++||++||+|+++++..+. + .++++++++|++|+||+|+ .
T Consensus 82 -----~~Ec~~r~lTYsapL~v~~rL~~~~~d~~~~~~~eikeq~Vy~GdiPLMT------------------------~ 132 (1342)
T 3lu0_C 82 -----VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT------------------------D 132 (1342)
T ss_dssp -----SSTTTSSCCCCCCCCBEEECCEECCCSSCCCCCCCCCBCCCBCCCCCCCC------------------------S
T ss_pred -----HHHHHhcCCCcccceEEEEEEEEeccccccccccceEEEEEEEecCceEC------------------------C
Confidence 69999999999999999999986431 1 1356778899999999999 6
Q ss_pred CcEEEEcCceeEEEEeecccCCEEEEEeC--C---CCc--eEEEEEecCCCcccEEEEEeeCCEEEEEEccccccccHHH
Q 001943 174 GGYFIIKGTEKVLLIQEQLSKNRVIIDTD--K---KGN--INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMV 246 (993)
Q Consensus 174 GGYFIInG~ERVI~~q~~~~~N~i~~~~~--~---~g~--~~~~v~s~~~~~~~~~~~~~~~g~i~~~~~~~~~~IPl~i 246 (993)
+|||||||+||||++|++|||+ ||+..+ + .|. |.|.++|.++ +|..+..++++.+|+++++ +++||+++
T Consensus 133 ~GtFIING~ERVIVsQl~RSPG-Vyf~~~~~k~~~~gk~lysa~IIP~RG--sWlefe~D~kd~l~vrIdr-~rKipvt~ 208 (1342)
T 3lu0_C 133 NGTFVINGTERVIVSQLHRSPG-VFFDSDKGKTHSSGKVLYNARIIPYRG--SWLDFEFDPKDNLFVRIDR-RRKLPATI 208 (1342)
T ss_dssp SSCEESSSSEEECCEEEECCSS-CCCCSCCSCSSSCCCSCCEEEECCSSS--CCEEEEEETTTEEEEEESS-CSCEETTH
T ss_pred CcEEEEcCceEEEEEeecccCc-eeEeccccccCCCCceEEEEEEecCCC--ccEEEEEcCCCeEEEEecC-CCceeeeh
Confidence 9999999999999999999999 877643 1 243 7899998875 7888888999999999999 57999999
Q ss_pred HHHHhCCCCHHHHHHHhCCchhh---------------------------------------------------------
Q 001943 247 VMKAMGMESDQEVVQMVGRDPRY--------------------------------------------------------- 269 (993)
Q Consensus 247 lLrALg~~sD~eI~~~i~~~~~~--------------------------------------------------------- 269 (993)
||||||++ ++||++.|+....+
T Consensus 209 lLrALG~~-~~~Il~~f~~~~~~~~~~~~~~~~~~~e~~~g~~~~~di~~~g~vi~~~g~~it~~~~~~l~~~g~~~i~v 287 (1342)
T 3lu0_C 209 ILRALNYT-TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 (1342)
T ss_dssp HHHTTTCC-HHHHHTTTSCEEEECEETTEEEECCCGGGGTTEECCSCEEETTEEEECSSSEECSHHHHHHHHTTCCCEEC
T ss_pred hHhHhCCC-HHHHHHHhcccceEEeccCceeeecchhhhcccccccchhccccceecccccccHHHHHHHHhccCccccc
Confidence 99999995 68999888421000
Q ss_pred ------------------------------HhhhhhhHHHHH-----------------------hcCCcCHHHHHHHHh
Q 001943 270 ------------------------------SALLLPSIEECA-----------------------NLDIYTQEKALEYLE 296 (993)
Q Consensus 270 ------------------------------~~~l~~~l~~~~-----------------------~~~i~t~~~al~yIg 296 (993)
.+.+...+.++. .+...++++|+.+|+
T Consensus 288 ~~~~l~g~~la~divd~~tge~~~~~~~~i~~~~l~~l~~~~i~~~~~l~~~~~~~~~~i~~tl~~d~~~~~~eAl~~iy 367 (1342)
T 3lu0_C 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIY 367 (1342)
T ss_dssp CSHHHHTSEECSCEECTTTCCEEECSSCBCCTTHHHHHHHHTCSCEEEECCCSSSSCCSGGGTTTTCCCCSSHHHHHHHH
T ss_pred CHHHhhcchhhheeeecCCCeEEecCCcccCHHHHHHHHHcCCcEEEEEecccccccHHHHHHHhhccCCCHHHHHHHHH
Confidence 000011111111 123568999999999
Q ss_pred hhcccCCCCCCCCChHHHHHHHHhhhhc-------CCCCC---------C--CCCCCcchhhHHHHHHHHHHhhcCCCCC
Q 001943 297 GKVKRSTFGSPPNDREGRAFSILRDVFL-------ANVPV---------H--NNNFRPKCFYVAVMLRRMVEAMLNKDAM 358 (993)
Q Consensus 297 ~~~~~~~~~~~~~~~~e~~~~~L~~~ll-------~Hl~~---------~--~~~~~~K~~~L~~Mi~kLl~~~~g~~~~ 358 (993)
+++|++ ... ..+.|+.+|++.|| +|+|. + ..+..-+...+..++++|+.+..|.+..
T Consensus 368 r~lrpg----ep~-t~e~a~~l~~~lFf~~~rYdL~~VGR~k~N~kL~l~~~~~~~~Lt~~DIi~~i~~Li~l~~g~~~~ 442 (1342)
T 3lu0_C 368 RMMRPG----EPP-TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEV 442 (1342)
T ss_dssp HHHSCS----SCC-CTTHHHHHHHHHHSCTTTCCCTTTHHHHHHTTTTCSCCCCCSSCCTTHHHHHHHHHHHHHHTSSCC
T ss_pred HhcCCC----CCC-CHHHHHHHHHHhhcCcccccchhhhhHHHhhhcCCCcCccccEecHHHHHHHHHHHHHHhhCCCCC
Confidence 999998 344 67889999988886 77762 1 1112223445666999999999999999
Q ss_pred CCcccccceEEcchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccccccccccchhhhhhhhccCCCcccccc
Q 001943 359 DDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFK 438 (993)
Q Consensus 359 DD~D~l~nkRv~~~G~Ll~~lfr~~l~~~~~~ik~~l~~~~~~~~~~~~~~~~~~i~~~~It~~i~~~~aTGnw~~~~~~ 438 (993)
||+|||+||||+++|+||++|||.+|.++.+.++++|.+. ....+.+..+++++.+++++++||+|
T Consensus 443 DDiDHLgNrRvr~vGeLl~~qfr~~l~r~~r~i~~~~~~~-----~~~~~~~~~lin~~~i~~~~k~ffg~--------- 508 (1342)
T 3lu0_C 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG-----DLDTLMPQDMINAKPISAAVKEFFGS--------- 508 (1342)
T ss_dssp CCSSSTTTSEEECHHHHHHHTHHHHHHHHHHHHTTHHHHC-----CSSCCSSTTTCCSSTTHHHHTTTTTT---------
T ss_pred cchhhhhcchhchHHHHHHHHHHHHHHHHHHHHHHHHhhc-----ccccCCHHHHhccchHHHHHHHHhCc---------
Confidence 9999999999999999999999999999999999999763 22356777889999999999999843
Q ss_pred cccccceEEecccccccccccccccC----ccccccccccCCCcCCCCCcccccccCCCCCCcchhhhhhccccccccCC
Q 001943 439 MHRKGMTQVLARLSFIGTLGHMTRVS----PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDE 514 (993)
Q Consensus 439 ~q~sG~sq~l~r~N~ls~lshlRri~----~~f~~~~k~~~~R~Lhps~wG~iCPveTPEG~~cGLv~~LA~~a~V~~~~ 514 (993)
+|+||+|+|+|+||+|||+||++ +++.++++.+.+|+|||||||||||+|||||+|||||+|||++|+|+.
T Consensus 509 ---s~lSQ~lDqtNpLseltHkRRlsalGPGGLsr~~a~fevRdvH~thyGRiCPiETPEG~niGLI~sLA~~a~in~-- 583 (1342)
T 3lu0_C 509 ---SQLSQFMVQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE-- 583 (1342)
T ss_dssp ---CSSCEECCCSSHHHHHHHHSBEESCCSTTSCCSSCCTTTSSCCTTCSSSSCTTCCCSSSCSSSCCBCCSSCCBCS--
T ss_pred ---cccceeecCCCHHHHHhhhhcccccCCCCccccccCceecccCcccccccccccCCCCCceeeecchhheEEecc--
Confidence 69999999999999999999998 357899999999999999999999999999999999999999999974
Q ss_pred CChhHHHHHHhcCCeeccccCccccCCCCceEEEECCeEeeeccChhhHHHHHHHHhhcCCcCceeEEEecccC-ceEEE
Q 001943 515 EEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQ-RCVYI 593 (993)
Q Consensus 515 ~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~V~~nG~~iG~~~~~~~~~~~lR~~rr~g~i~~~v~i~~~~~~-~~i~I 593 (993)
+|+.. ..|.+..||++-.- -.|+.... ....|
T Consensus 584 -----------~Gfie------------tPyr~V~~g~v~~~------------------------i~yLsA~eE~~~~I 616 (1342)
T 3lu0_C 584 -----------YGFLE------------TPYRKVTDGVVTDE------------------------IHYLSAIEEGNYVI 616 (1342)
T ss_dssp -----------SSCBC------------EEEEEEETTEEEEE------------------------EEEECTTTGGGSCB
T ss_pred -----------CCccc------------CCcEEEECCEEcCc------------------------eeeCChHHhcCceE
Confidence 44421 23555567765210 01111111 11111
Q ss_pred ecCCCeeeeeEEEeecCcccchhhhHHhhhccCcchhhhhccCceeeeccccccceEEEeecCCCCCCcceeeecCceee
Q 001943 594 ASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTIL 673 (993)
Q Consensus 594 ~td~gR~~RPl~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~iE~id~~Eq~~~~Ia~~~~~~~~~~th~Ei~p~~il 673 (993)
+.....+ -++|.. ....|.-- .+.+ .+.+.+ ...+||+|+|.|++
T Consensus 617 Aqan~~l------~~~g~~---------------------~~~~v~~R--~~~e--~~~~~~----~~v~~~dvsP~qiv 661 (1342)
T 3lu0_C 617 AQANSNL------DEEGHF---------------------VEDLVTCR--SKGE--SSLFSR----DQVDYMDVSTQQVV 661 (1342)
T ss_dssp CCSSSCC------SSSSCC---------------------SCSSEEEE--CSSC--EEEECT----TTCCEEESCTTTTS
T ss_pred EecCccc------CCCCcc---------------------cCCeEEEE--ecCc--eEEeCh----HHCeeEecCHHHhc
Confidence 1110000 011100 00000000 0001 111122 34799999999999
Q ss_pred cccccccCCCCCCCCCcccccccccCCCccce-----------------------------------eeeecccccc---
Q 001943 674 GVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNI-----------------------------------AFNQLCRMDS--- 715 (993)
Q Consensus 674 sv~AslIPF~~hNqspRn~yq~~M~KQa~G~~-----------------------------------~~n~~~r~D~--- 715 (993)
||+||||||++||||||++|||||||||||+. +.++..|.|.
T Consensus 662 SvaaslIPFLEhdDAnRaLMGsNMQRQAVPLl~~e~p~VgTG~E~~~a~dsg~~i~a~~~G~v~~vda~~I~Ir~~~~~~ 741 (1342)
T 3lu0_C 662 SVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEM 741 (1342)
T ss_dssp CHHHHSCTTSTTBCHHHHHHHHHTTTTBCCCSSCCCCSSBCSCHHHHHHHTTTSCBCSSCBEECCCCSSBCCEEECSSSS
T ss_pred chhhccCCCcccCCccccchhhhccccccccccCCCCeEecccchheeecCCceEEecCCCEEEEecCCeEEEEeCCCcc
Confidence 99999999999999999999999999999876 3445556553
Q ss_pred -------ceee----------ecCCCcceeechhh----hh------hCCCCCCCCceeEEEEEecCCCCCCCcEEEecc
Q 001943 716 -------LLYL----------LVYPQRPLLTTRTI----EL------VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKS 768 (993)
Q Consensus 716 -------~~y~----------l~ypQ~PlV~t~~~----~~------~~~~~~p~G~N~~VAv~~~~Gyn~EDaiiink~ 768 (993)
..|. +||+|||+|+++.. ++ +..+|+|+|+|++||||||.|||||||||||++
T Consensus 742 ~~~~~~~~~y~L~kf~RSNq~Tc~~QrPiV~~G~~V~~GdilADG~st~~GElaLG~N~lVAfMpW~GYNfEDAIlISEr 821 (1342)
T 3lu0_C 742 YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 (1342)
T ss_dssp SSSCCEEECCBCCCSCBCSSSCBCCCCBCCCSSCCBCTTCBCBCCSSCSSSSCCCSEECCEECCCCSSTTSSSEEEECTH
T ss_pred ccccCcceEEEecccccccccccccccceeecCCEEecCcEecccccccCCeeecccccEEEEecccCcccccchhhhhh
Confidence 2343 48999999999964 43 478999999999999999999999999999999
Q ss_pred cccccceeEEEEEEEEEEeecccCCccceecC-CCCCCCcchhcccCCCCccccCCceeCCCCEEEEEecCCCCCCCCC-
Q 001943 769 SLDRGFGRCIVVKKYTAINQKYANSTSDRILR-PDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIM- 846 (993)
Q Consensus 769 ~~~rg~~~s~~~~~~~~~~~~~~~~~~e~~~~-p~~~~~~~~~~~~ld~~Gi~~~g~~v~~gdili~k~~~~~~~~~~~- 846 (993)
++++|+|||+|+++|++++++++.|.+|.+.. |+.+ +..+++||++|||++|++|++|||||||+||+++.+..+
T Consensus 822 lV~eD~fTSIHIee~e~~aRdtklG~EeiTrdIPnv~---e~al~~LDe~GIv~iGa~V~~GDILVGKvtPkge~~~tpE 898 (1342)
T 3lu0_C 822 VVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVG---EAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 (1342)
T ss_dssp HHHTTTSCEEEEEEEEEECCEETTEECCCCSCCSSCC---HHHHHSBCSSSCBCTTCCCCTTCEEECCCCBCCTTTCCHH
T ss_pred hhhcCCceeEEEEEEeeeeeecCCCCceecccCCCCC---hHHHhcCCCCCCeecCcEECCCCEEEeccCCCCCCcCChH
Confidence 99999999999999999999999988775554 8764 368999999999999999999999999999998754432
Q ss_pred -----CCCCCCCcccccceEEeeCCCCCceEEEEEEEeeCC---------------------------------------
Q 001943 847 -----SPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDK--------------------------------------- 882 (993)
Q Consensus 847 -----~~~~~~~~~~~~~s~~~~~~e~~~~~v~~v~~~~~~--------------------------------------- 882 (993)
.-++++....+|+|+++++++ .|+|..|.+++..
T Consensus 899 ekLLraIFGeka~~vkDtSL~vp~g~--~G~Vidv~~f~r~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 976 (1342)
T 3lu0_C 899 EKLLRAIFGEKASDVKDSSLRVPNGV--SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 (1342)
T ss_dssp HHHGGGTSCSSSSSBCCCCEECCTTC--CCEEEECCCCCCGGGCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccccccCcEecCCCC--cEEEEEEEEEecccccchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 126788888999999999999 9999888765421
Q ss_pred --------------------------------------------------------------------CCCeEEEEEEee
Q 001943 883 --------------------------------------------------------------------NGDLCIKFLIRH 894 (993)
Q Consensus 883 --------------------------------------------------------------------~~~~~vkv~ir~ 894 (993)
+..+.|||++|+
T Consensus 977 ~~l~~~g~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~gd~l~~gv~k~VkV~ia~ 1056 (1342)
T 3lu0_C 977 AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 (1342)
T ss_dssp HHHHTTSCCHHHHTTSCGGGTTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSSSCEEEEEEEE
T ss_pred HHHhhcCCCHHHHhhCCHHHhhccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCcCCceEEEEEEEE
Confidence 135789999999
Q ss_pred ccCCCccccccccCCCcceeeeeecCCCCCCCCCCCcCeEEeCCCCCCCCCchhhhHHhhcccccccCCC
Q 001943 895 TRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGR 964 (993)
Q Consensus 895 ~R~p~iGDKfasRHGqKGvvs~i~~~~DMPf~~~G~~pDiIiNPhg~PSRMtiGql~E~~~gk~~~~~G~ 964 (993)
.|+|++|||||||||||||||+|||+|||||++||++|||||||||||||||||||+|+++||||+.+|.
T Consensus 1057 kRk~qvGDK~AgRHGnKGVis~I~p~EDMPf~~dG~~pDIIlNP~gvPSRMnIGqilE~~lG~aa~~~G~ 1126 (1342)
T 3lu0_C 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 (1342)
T ss_dssp EECCCTTCEEECSSSCCEEECCCCCTTTSCEETTEEECSEECCGGGTTSSCBTHHHHHHHHHHGGGTSST
T ss_pred eccCCCCCCcccccCCCceEEEEecccCCCCCCCCCCCcEEeCCCCCCCccchhhhhHHhhhHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999885
No 6
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=99.96 E-value=1.3e-30 Score=265.51 Aligned_cols=119 Identities=26% Similarity=0.553 Sum_probs=108.3
Q ss_pred chHHHHHHHHHHHH----------HhCHHHHHHhcCcccccC--CCcEEEEEeeEEEcCCeeccCCCCCCCChHHHHhcC
Q 001943 43 GLVKQHLDSFNYFV----------NTGIRKIVRANDRIVSGI--DPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSD 110 (993)
Q Consensus 43 ~Lv~~hi~SFn~Fi----------~~gl~~ii~~~~~I~~~~--~~~~~l~f~~v~i~~P~~~~~~~~~~l~P~EcR~r~ 110 (993)
+|+++|++|||||+ ++||++++++++||+... ++++.|+|.++++++|.+ +|+|||+|+
T Consensus 2 ~Lv~~Q~~SF~~Flq~~~~~~~r~~~GL~ei~~~~~pI~~~~~~~~~~~L~f~~~~l~~P~~---------~p~Ecr~r~ 72 (188)
T 3mlq_A 2 PLTEIQVESYKKALQADVPPEKRENVGIQAAFKETFPIEEGDKGKGGLVLDFLEYRIGDPPF---------SQDECREKD 72 (188)
T ss_dssp CCHHHHHHHHHHHHCTTSCGGGCCSCHHHHHHHHHCCEEECCSSSCCEEEEEEEEEECCCSS---------CHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCcccccchhhcHHHHHHhcCCeeeccCCCCeEEEEEEEEEecCCCC---------CHHHHHhcC
Confidence 68999999999999 899999999999997543 378999999999999975 899999999
Q ss_pred CccCceEEEEEEEEECCcccceeeEEeEEEEeeccceeccccccCCCCCHHHHHhcCCCCCCCCcEEEEcCceeEEEEee
Q 001943 111 MTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQE 190 (993)
Q Consensus 111 lTYs~~l~v~v~~~~~~~~~~~~i~~~~v~iG~iPIMv~S~~C~L~~~s~~el~~~gE~~~d~GGYFIInG~ERVI~~q~ 190 (993)
+||+|||+|+++++.+++ +++++++|++|+||+|+ +||||||||+||||++||
T Consensus 73 lTYsapl~v~v~l~~~~~---~~i~~~~v~iG~iPlMt------------------------~gGyFIING~ERVIVsQe 125 (188)
T 3mlq_A 73 LTYQAPLYARLQLIHKDT---GLIKEDEVFLGHLPLMT------------------------EDGSFIINGADRVIVSQG 125 (188)
T ss_dssp CCCEEEEEEEEEEEETTT---CCEEEEEEEEEEEECCC------------------------TTSCEEETTEEEECCCCS
T ss_pred CCcceeEEEEEEEEECCC---ceEEEEEEEEcccCEEC------------------------CCCEEEECCEEEEEEEee
Confidence 999999999999987552 56777899999999999 899999999999999999
Q ss_pred cccCCEE
Q 001943 191 QLSKNRV 197 (993)
Q Consensus 191 ~~~~N~i 197 (993)
++++|.+
T Consensus 126 ~r~~gel 132 (188)
T 3mlq_A 126 GRTVGEL 132 (188)
T ss_dssp SSCHHHH
T ss_pred cccCCee
Confidence 9999843
No 7
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory protein, transcription; 3.00A {Escherichia coli}
Probab=99.34 E-value=5.9e-13 Score=137.03 Aligned_cols=99 Identities=14% Similarity=0.213 Sum_probs=82.2
Q ss_pred EEEEEEEEEeecccCCccceecC--CCCCCCcchhcccCCCCccccCCceeCCCCEEEEEecCCCCCCCCCC------CC
Q 001943 778 IVVKKYTAINQKYANSTSDRILR--PDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMS------PT 849 (993)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~e~~~~--p~~~~~~~~~~~~ld~~Gi~~~g~~v~~gdili~k~~~~~~~~~~~~------~~ 849 (993)
+|+.+|+++++.++.|. |.++. |+.+ ...+++||++||+++|++|++|||||||+||+++.+..+. -+
T Consensus 2 iHIeeyei~~r~tk~G~-EeIT~dIPnv~---e~~l~~LDe~GIV~iGs~V~~GDILVGKvTPk~~~~~tpEekLL~aIf 77 (228)
T 3tbi_B 2 IHIQELACVSRDTKLGP-EEITADIPNVG---EAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIF 77 (228)
T ss_dssp CEEEEEEEEEEEETTEE-CEESSCCSSCC---HHHHHTBCTTSBBCTTCCCBTTCEEECEEEECCGGGCCHHHHHHHHHH
T ss_pred ccEEEEEEEEEEcCCCC-eEEecCCCCcc---HHHHhcCCCCCCeecCCEECCCCEEEeccCCCCCCCCChHHHHHHHHh
Confidence 68999999999998886 65654 7664 3689999999999999999999999999999986543221 14
Q ss_pred CCCCcccccceEEeeCCCCCceEEEEEEEeeCC
Q 001943 850 GQTDSRYRSARQTYKGPDGETCVVDRVALCSDK 882 (993)
Q Consensus 850 ~~~~~~~~~~s~~~~~~e~~~~~v~~v~~~~~~ 882 (993)
+.+....+|+|+++++++ .|+|..|.+++..
T Consensus 78 g~k~~~vkDtSL~vp~G~--~G~VidV~if~r~ 108 (228)
T 3tbi_B 78 GEKASDVKDSSLRVPNGV--SGTVIDVQVFTRD 108 (228)
T ss_dssp CTTSSCEEECCEECCSSC--BEEEEEEEEEEBT
T ss_pred CCccccceeCcEecCCCC--cEEEEEEEEEecC
Confidence 667778899999999998 9999999988753
No 8
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=98.79 E-value=6.9e-08 Score=104.29 Aligned_cols=68 Identities=18% Similarity=0.384 Sum_probs=53.4
Q ss_pred ccCCEEEEEeCC-----CCc--eEEEEEecCCCcccEEEEEeeCCEEEEEEccccccccHHHHHHHhCCCCHHHHHHHhC
Q 001943 192 LSKNRVIIDTDK-----KGN--INASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESDQEVVQMVG 264 (993)
Q Consensus 192 ~~~N~i~~~~~~-----~g~--~~~~v~s~~~~~~~~~~~~~~~g~i~~~~~~~~~~IPl~ilLrALg~~sD~eI~~~i~ 264 (993)
.||+ ||+..+. .|. |.|+++|.++ +|..+.++.++.+|+++++ ++++|+++||||||++ ++||++.|+
T Consensus 4 ~SPG-v~f~~~~~~ths~g~~~y~~~iIP~RG--sWlefe~d~~d~~~vrIdr-~rK~p~t~lLrAlG~~-~edIL~~Fy 78 (296)
T 3lti_A 4 MSPG-VFFDSDKGKTHSSGKVLYNARIIPYRG--SWLDFEFDPKDNLFVRIDR-RRKLPATIILRALNYT-TEQILDLFF 78 (296)
T ss_dssp CCCE-EEEEEC---------CCEEEEEECSBS--CCEEEEECTTSCEEEEETT-CCCEETHHHHHHTTCC-HHHHHHHHC
T ss_pred CCCE-EEEecccCCcCCCCcEEEEEEEecCCC--ceEEEEEcCCCeEEEEEcC-cccchHHHHHHHcCCC-hHHHHHhcc
Confidence 4564 7765432 243 7899998775 7888888899999999999 4699999999999995 789999983
No 9
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=96.39 E-value=0.0014 Score=66.84 Aligned_cols=64 Identities=9% Similarity=0.148 Sum_probs=56.3
Q ss_pred ccceEEcchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCcccccccccccchhhhhhhhccCCC
Q 001943 364 VGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF 432 (993)
Q Consensus 364 l~nkRv~~~G~Ll~~lfr~~l~~~~~~ik~~l~~~~~~~~~~~~~~~~~~i~~~~It~~i~~~~aTGnw 432 (993)
+-+|+.+++|+||+..+|.+|.+++|.+|++|... ....+.+.+++|.++++..|+.||.|+++
T Consensus 121 IVsQe~r~~gell~~q~r~gl~r~ek~~~e~~~~~-----~~~~~~~~~l~n~kp~~~~ik~ff~ss~L 184 (188)
T 3mlq_A 121 IVSQGGRTVGELMADQFRVGLARLARGVRERMVMG-----SPDTLTPAKLVNSRPLEAALREFFSRSQL 184 (188)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CGGGCCHHHHCCCHHHHHHHHHHHHTCEE
T ss_pred EEEeecccCCeeeEEehhhHHHHHHHHHHhhhccc-----cccccCcccchhhHHHHHHHHHhhccccc
Confidence 56789999999999999999999999999999764 23457888999999999999999988765
No 10
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=16.07 E-value=56 Score=29.63 Aligned_cols=38 Identities=29% Similarity=0.478 Sum_probs=31.9
Q ss_pred CCCCCCCCCcCeEEeCCCCCCCCCchhhhHHhhccccc
Q 001943 922 DFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAG 959 (993)
Q Consensus 922 DMPf~~~G~~pDiIiNPhg~PSRMtiGql~E~~~gk~~ 959 (993)
..|---.|-.++-.=-||||-|||-+-..++.|.|-+.
T Consensus 77 ~FPlyl~g~~~~~yGIpHGFSSR~~L~r~l~~~F~~~~ 114 (124)
T 2g7j_A 77 NFPLYLGGETHEHYGIPHGFSSRIALERYLNGLFGDEK 114 (124)
T ss_dssp CSCCCCSSSSCCEEECEECCSCHHHHHHHHHHHHTC--
T ss_pred cCCcccccCcccccCCCcCcchHHHHHHHHHHhhcccc
Confidence 46666689999999999999999999999999988543
Done!