Query 001944
Match_columns 993
No_of_seqs 218 out of 442
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 12:57:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1057 Arp2/3 complex-interac 100.0 1E-279 3E-284 2339.7 55.1 920 6-993 81-1017(1018)
2 PF08443 RimK: RimK-like ATP-g 99.9 1.6E-27 3.4E-32 241.9 7.0 171 54-254 2-174 (190)
3 COG0189 RimK Glutathione synth 99.9 1.1E-26 2.4E-31 254.8 13.0 207 15-254 78-294 (318)
4 PRK10446 ribosomal protein S6 99.9 1.2E-23 2.6E-28 226.8 14.0 205 14-249 56-265 (300)
5 PLN02941 inositol-tetrakisphos 99.9 6.3E-23 1.4E-27 226.1 16.1 216 17-267 68-322 (328)
6 TIGR02144 LysX_arch Lysine bio 99.9 1.8E-21 4E-26 205.6 13.6 209 8-249 40-254 (280)
7 TIGR00768 rimK_fam alpha-L-glu 99.9 2E-21 4.4E-26 203.2 12.5 205 13-249 46-256 (277)
8 PRK05246 glutathione synthetas 99.9 2.4E-21 5.2E-26 211.3 12.7 200 10-248 74-285 (316)
9 TIGR01380 glut_syn glutathione 99.8 6.7E-21 1.4E-25 208.0 12.0 199 11-248 74-284 (312)
10 PF00328 His_Phos_2: Histidine 99.8 8.1E-19 1.7E-23 186.7 21.0 151 635-897 197-347 (347)
11 PRK12458 glutathione synthetas 99.8 5.8E-20 1.3E-24 203.2 12.3 196 12-246 76-295 (338)
12 TIGR02291 rimK_rel_E_lig alpha 99.7 1.1E-17 2.3E-22 184.2 12.5 185 43-251 25-272 (317)
13 TIGR03103 trio_acet_GNAT GNAT- 99.7 9.3E-18 2E-22 196.2 10.0 178 43-251 285-524 (547)
14 PRK14016 cyanophycin synthetas 99.7 1.1E-16 2.3E-21 192.8 10.5 182 43-254 202-452 (727)
15 TIGR02068 cya_phycin_syn cyano 99.7 2E-16 4.3E-21 193.6 10.0 175 45-249 203-446 (864)
16 PRK02471 bifunctional glutamat 99.6 1.6E-15 3.6E-20 183.0 11.2 183 42-250 475-727 (752)
17 PRK01372 ddl D-alanine--D-alan 99.6 3.9E-14 8.4E-19 152.2 19.3 203 13-248 54-269 (304)
18 TIGR01435 glu_cys_lig_rel glut 99.5 3.6E-14 7.7E-19 170.4 10.6 175 46-248 466-711 (737)
19 TIGR01205 D_ala_D_alaTIGR D-al 99.5 6.4E-13 1.4E-17 143.3 16.7 207 15-248 63-284 (315)
20 PF02955 GSH-S_ATP: Prokaryoti 99.4 1.4E-13 3.1E-18 140.4 5.8 145 70-249 12-162 (173)
21 PRK14571 D-alanyl-alanine synt 99.4 6.2E-12 1.3E-16 136.0 17.0 207 15-258 53-274 (299)
22 PRK14569 D-alanyl-alanine synt 99.4 4.9E-12 1.1E-16 137.3 14.6 197 16-248 57-264 (296)
23 PRK06849 hypothetical protein; 99.3 7.8E-12 1.7E-16 139.8 14.6 194 16-246 77-273 (389)
24 PRK12767 carbamoyl phosphate s 99.3 2.4E-11 5.3E-16 131.5 13.7 193 16-247 70-268 (326)
25 TIGR01142 purT phosphoribosylg 99.3 2.5E-11 5.5E-16 134.5 13.9 197 16-246 63-269 (380)
26 KOG1057 Arp2/3 complex-interac 99.3 1E-12 2.2E-17 154.1 0.9 85 795-903 780-864 (1018)
27 PRK14572 D-alanyl-alanine synt 99.2 1.1E-10 2.3E-15 129.7 16.3 189 32-249 106-315 (347)
28 PRK01966 ddl D-alanyl-alanine 99.2 1.1E-10 2.5E-15 128.7 13.4 206 15-248 81-300 (333)
29 PRK14568 vanB D-alanine--D-lac 99.2 2.8E-10 6E-15 126.1 15.8 199 15-247 90-308 (343)
30 cd07061 HP_HAP_like Histidine 99.2 3.3E-10 7.1E-15 118.5 14.1 49 454-506 28-78 (242)
31 TIGR01161 purK phosphoribosyla 99.1 5.2E-10 1.1E-14 123.7 14.9 192 16-247 61-263 (352)
32 PRK13790 phosphoribosylamine-- 99.1 2.4E-10 5.1E-15 128.6 11.4 195 26-247 36-248 (379)
33 PRK14570 D-alanyl-alanine synt 99.1 6.6E-10 1.4E-14 124.9 14.1 207 16-248 88-315 (364)
34 PF13535 ATP-grasp_4: ATP-gras 99.1 4.5E-10 9.9E-15 110.5 10.9 166 52-247 1-177 (184)
35 PRK09288 purT phosphoribosylgl 99.1 5.9E-10 1.3E-14 124.3 11.9 197 16-247 76-283 (395)
36 PRK06019 phosphoribosylaminoim 99.0 2.4E-09 5.2E-14 119.9 15.3 196 15-248 63-266 (372)
37 PRK07206 hypothetical protein; 99.0 4.3E-09 9.4E-14 118.4 15.3 207 16-246 71-285 (416)
38 PF05770 Ins134_P3_kin: Inosit 99.0 3.1E-09 6.7E-14 117.4 13.3 217 16-270 53-306 (307)
39 PRK00885 phosphoribosylamine-- 99.0 2.3E-09 5E-14 121.4 11.3 207 16-247 63-286 (420)
40 PRK02186 argininosuccinate lya 98.9 2.1E-08 4.6E-13 124.1 18.0 203 10-247 65-275 (887)
41 PRK05294 carB carbamoyl phosph 98.9 6.1E-09 1.3E-13 131.0 11.7 197 16-247 630-839 (1066)
42 TIGR01369 CPSaseII_lrg carbamo 98.9 2.7E-08 5.9E-13 125.1 16.7 198 16-247 630-839 (1050)
43 PRK05586 biotin carboxylase; V 98.9 5E-09 1.1E-13 120.0 9.2 203 14-247 73-291 (447)
44 PF02655 ATP-grasp_3: ATP-gras 98.9 5E-09 1.1E-13 104.7 7.5 149 53-246 1-155 (161)
45 PRK08654 pyruvate carboxylase 98.8 6.5E-09 1.4E-13 121.4 9.5 201 16-247 75-290 (499)
46 PRK08463 acetyl-CoA carboxylas 98.8 5.8E-09 1.3E-13 120.9 8.7 205 15-248 73-292 (478)
47 PRK08462 biotin carboxylase; V 98.8 5.9E-09 1.3E-13 119.0 8.7 203 15-247 76-293 (445)
48 PRK07178 pyruvate carboxylase 98.8 9E-09 2E-13 119.0 9.4 203 15-248 73-291 (472)
49 PF14397 ATPgrasp_ST: Sugar-tr 98.8 1.4E-08 3E-13 111.0 10.2 187 45-248 16-257 (285)
50 TIGR00877 purD phosphoribosyla 98.8 2.1E-08 4.6E-13 113.4 11.8 204 16-247 65-288 (423)
51 PRK06111 acetyl-CoA carboxylas 98.8 2.1E-08 4.6E-13 114.1 11.2 203 17-248 76-292 (450)
52 PLN02948 phosphoribosylaminoim 98.8 1.1E-07 2.4E-12 113.1 16.4 199 16-249 84-290 (577)
53 PRK08591 acetyl-CoA carboxylas 98.8 1.4E-08 3.1E-13 115.8 8.7 202 16-247 75-291 (451)
54 PRK06395 phosphoribosylamine-- 98.8 3E-08 6.5E-13 114.0 11.3 204 16-246 66-290 (435)
55 PRK12815 carB carbamoyl phosph 98.7 2.6E-07 5.7E-12 116.6 16.7 195 16-247 631-837 (1068)
56 TIGR01235 pyruv_carbox pyruvat 98.7 4.5E-08 9.7E-13 123.7 9.0 197 15-246 74-290 (1143)
57 TIGR00514 accC acetyl-CoA carb 98.7 6.6E-08 1.4E-12 110.8 9.7 202 15-247 74-291 (449)
58 PRK12999 pyruvate carboxylase; 98.6 9.7E-08 2.1E-12 121.0 9.2 200 16-247 79-295 (1146)
59 PF02750 Synapsin_C: Synapsin, 98.6 2E-07 4.3E-12 97.1 9.7 168 45-250 1-179 (203)
60 PF07478 Dala_Dala_lig_C: D-al 98.6 6.2E-08 1.4E-12 101.0 6.1 159 62-249 1-175 (203)
61 PRK14573 bifunctional D-alanyl 98.6 4.3E-07 9.3E-12 111.6 14.0 207 16-247 527-754 (809)
62 PLN02257 phosphoribosylamine-- 98.6 3.2E-07 6.8E-12 105.8 11.4 195 26-246 71-287 (434)
63 PRK12833 acetyl-CoA carboxylas 98.5 1.9E-07 4.1E-12 108.0 8.7 205 15-248 77-295 (467)
64 COG1821 Predicted ATP-utilizin 98.5 3.2E-07 6.8E-12 98.8 8.7 167 15-247 73-254 (307)
65 PF15632 ATPgrasp_Ter: ATP-gra 98.5 9.2E-07 2E-11 99.0 12.8 196 16-246 67-278 (329)
66 COG1181 DdlA D-alanine-D-alani 98.5 7.2E-07 1.6E-11 99.3 11.8 191 31-249 78-286 (317)
67 PLN02735 carbamoyl-phosphate s 98.5 1E-06 2.2E-11 111.6 14.3 197 16-247 650-874 (1102)
68 PRK05294 carB carbamoyl phosph 98.5 1.7E-06 3.7E-11 109.4 15.8 195 15-246 82-301 (1066)
69 PRK06524 biotin carboxylase-li 98.4 6.6E-07 1.4E-11 104.5 10.2 175 41-246 128-320 (493)
70 PLN02735 carbamoyl-phosphate s 98.4 4.3E-06 9.2E-11 106.2 17.0 197 15-246 98-318 (1102)
71 PRK13789 phosphoribosylamine-- 98.4 5.9E-06 1.3E-10 95.2 16.2 205 16-248 69-294 (426)
72 TIGR01369 CPSaseII_lrg carbamo 98.3 1E-05 2.2E-10 102.4 16.2 196 15-247 81-300 (1050)
73 TIGR02712 urea_carbox urea car 98.2 7.9E-06 1.7E-10 104.5 14.0 202 16-248 74-291 (1201)
74 PF14398 ATPgrasp_YheCD: YheC/ 98.2 6.3E-06 1.4E-10 89.3 9.6 193 38-252 6-236 (262)
75 PRK12815 carB carbamoyl phosph 98.1 3.3E-05 7.2E-10 98.1 15.8 206 15-257 82-309 (1068)
76 PRK05784 phosphoribosylamine-- 98.0 2.6E-05 5.6E-10 91.5 11.9 200 16-246 70-307 (486)
77 PRK13278 purP 5-formaminoimida 97.8 0.00091 2E-08 76.2 17.7 179 38-249 107-312 (358)
78 PF02786 CPSase_L_D2: Carbamoy 97.4 3.2E-05 6.9E-10 81.7 0.3 164 55-248 1-179 (211)
79 COG2232 Predicted ATP-dependen 97.4 0.00069 1.5E-08 75.9 9.8 171 14-247 82-272 (389)
80 PRK13277 5-formaminoimidazole- 97.4 0.00074 1.6E-08 76.9 10.0 155 54-246 125-316 (366)
81 COG0439 AccC Biotin carboxylas 97.4 0.00027 5.9E-09 82.4 6.4 169 47-246 107-290 (449)
82 KOG3895 Synaptic vesicle prote 96.7 0.00088 1.9E-08 75.3 3.0 214 18-277 159-394 (488)
83 PF02222 ATP-grasp: ATP-grasp 96.7 0.006 1.3E-07 63.0 8.8 149 63-246 1-158 (172)
84 COG0027 PurT Formate-dependent 96.4 0.0064 1.4E-07 68.1 7.1 173 40-246 98-282 (394)
85 COG0458 CarB Carbamoylphosphat 96.4 0.018 3.9E-07 66.5 10.6 211 4-251 51-293 (400)
86 PF14305 ATPgrasp_TupA: TupA-l 95.8 0.47 1E-05 51.5 17.5 180 48-246 13-215 (239)
87 PF01071 GARS_A: Phosphoribosy 95.8 0.053 1.1E-06 57.4 9.9 165 55-246 2-186 (194)
88 COG0026 PurK Phosphoribosylami 95.5 0.16 3.5E-06 58.4 13.1 203 21-263 67-279 (375)
89 COG3919 Predicted ATP-grasp en 93.1 0.22 4.7E-06 56.0 6.9 159 52-246 111-285 (415)
90 KOG3672 Histidine acid phospha 91.3 0.13 2.8E-06 59.2 2.6 62 454-522 178-243 (487)
91 COG1038 PycA Pyruvate carboxyl 87.0 1 2.2E-05 56.2 6.0 182 41-251 107-301 (1149)
92 PF14243 DUF4343: Domain of un 82.8 10 0.00022 37.9 9.9 81 152-249 33-117 (130)
93 KOG0238 3-Methylcrotonyl-CoA c 78.1 4.2 9.1E-05 48.9 6.2 178 42-251 98-291 (670)
94 PRK10172 phosphoanhydride phos 75.5 2 4.4E-05 50.8 2.9 54 451-506 77-135 (436)
95 COG0151 PurD Phosphoribosylami 75.3 4.6 9.9E-05 47.7 5.5 167 51-246 99-286 (428)
96 PF03133 TTL: Tubulin-tyrosine 75.0 1.5 3.3E-05 48.0 1.6 54 105-176 67-126 (292)
97 KOG0369 Pyruvate carboxylase [ 74.7 4.2 9.1E-05 50.2 5.1 178 46-251 138-327 (1176)
98 COG4770 Acetyl/propionyl-CoA c 70.2 7.6 0.00016 47.4 5.8 182 42-251 102-295 (645)
99 cd07040 HP Histidine phosphata 70.1 4.1 8.8E-05 39.1 3.1 25 478-502 47-71 (153)
100 KOG3720 Lysosomal & prostatic 67.7 5.5 0.00012 46.7 4.1 52 454-507 80-133 (411)
101 KOG3720 Lysosomal & prostatic 66.9 3.7 8E-05 48.2 2.4 33 867-905 317-349 (411)
102 PHA02117 glutathionylspermidin 66.3 17 0.00037 42.8 7.6 65 105-187 309-379 (397)
103 PRK10172 phosphoanhydride phos 64.2 4.8 0.0001 47.7 2.7 56 818-895 322-379 (436)
104 TIGR01016 sucCoAbeta succinyl- 62.7 4.1 8.9E-05 46.9 1.8 42 57-111 6-48 (386)
105 PF13549 ATP-grasp_5: ATP-gras 56.7 4.5 9.7E-05 43.8 0.7 47 55-114 11-57 (222)
106 PRK00696 sucC succinyl-CoA syn 53.7 6.5 0.00014 45.3 1.4 43 56-111 5-48 (388)
107 PRK10173 glucose-1-phosphatase 52.5 10 0.00022 44.7 2.7 55 451-506 75-133 (413)
108 PRK10507 bifunctional glutathi 51.9 38 0.00081 42.2 7.4 66 105-187 529-600 (619)
109 PF00300 His_Phos_1: Histidine 49.2 14 0.0003 35.6 2.7 21 481-501 50-70 (158)
110 PF14403 CP_ATPgrasp_2: Circul 42.6 28 0.0006 41.7 4.3 132 33-194 261-429 (445)
111 TIGR03162 ribazole_cobC alpha- 42.1 18 0.00039 36.4 2.3 21 481-501 46-66 (177)
112 cd07067 HP_PGM_like Histidine 41.6 19 0.00042 35.0 2.4 21 481-501 50-70 (153)
113 PLN00124 succinyl-CoA ligase [ 41.1 11 0.00025 44.5 0.9 22 57-78 33-54 (422)
114 cd02639 R3H_RRM R3H domain of 37.5 38 0.00081 30.1 3.3 34 194-227 11-44 (60)
115 PRK14046 malate--CoA ligase su 37.4 17 0.00036 42.6 1.5 21 58-78 7-27 (392)
116 PRK03482 phosphoglycerate muta 35.0 29 0.00062 36.5 2.6 20 481-500 50-69 (215)
117 PRK13463 phosphatase PhoE; Pro 34.2 29 0.00063 36.4 2.5 20 481-500 51-70 (203)
118 PRK10173 glucose-1-phosphatase 33.7 32 0.0007 40.7 3.0 46 818-880 304-350 (413)
119 PF08442 ATP-grasp_2: ATP-gras 31.7 19 0.00041 38.6 0.6 42 58-112 6-48 (202)
120 COG0406 phoE Broad specificity 31.4 34 0.00073 35.5 2.4 24 480-503 52-75 (208)
121 smart00855 PGAM Phosphoglycera 31.2 36 0.00079 33.5 2.5 21 481-501 51-71 (155)
122 PTZ00123 phosphoglycerate muta 29.3 39 0.00084 36.5 2.5 21 481-501 39-59 (236)
123 PRK15004 alpha-ribazole phosph 29.0 38 0.00082 35.2 2.3 20 481-500 49-68 (199)
124 TIGR03848 MSMEG_4193 probable 28.4 40 0.00088 35.1 2.4 21 481-501 49-69 (204)
125 TIGR00249 sixA phosphohistidin 27.8 46 0.001 33.6 2.6 21 481-501 47-67 (152)
126 KOG2156 Tubulin-tyrosine ligas 26.6 14 0.00031 44.8 -1.5 74 70-177 283-362 (662)
127 COG1181 DdlA D-alanine-D-alani 25.7 24 0.00052 40.3 0.1 83 91-186 75-159 (317)
128 PRK01295 phosphoglyceromutase; 23.1 62 0.0013 34.2 2.6 21 481-501 53-73 (206)
129 PRK14115 gpmA phosphoglyceromu 22.8 62 0.0014 35.4 2.6 21 481-501 51-71 (247)
130 PF03133 TTL: Tubulin-tyrosine 22.7 96 0.0021 34.1 4.1 30 227-256 237-267 (292)
131 PTZ00122 phosphoglycerate muta 21.9 72 0.0016 36.1 3.0 22 481-502 156-177 (299)
132 PRK14116 gpmA phosphoglyceromu 20.6 70 0.0015 34.4 2.4 20 481-500 52-71 (228)
133 KOG1382 Multiple inositol poly 20.5 82 0.0018 38.1 3.1 30 481-510 162-191 (467)
No 1
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=100.00 E-value=1.4e-279 Score=2339.68 Aligned_cols=920 Identities=55% Similarity=0.832 Sum_probs=833.7
Q ss_pred eeccCCCCCCcCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccc
Q 001944 6 FINLGTRWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQEL 85 (993)
Q Consensus 6 ~~~~Ve~WP~cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~ 85 (993)
.-|||||||+|||||||||+||||+||++|++|||||+||||.||+++||||+||+||++.|||+|++.+++|++|.+.+
T Consensus 81 L~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLRnPFviNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn~~~ 160 (1018)
T KOG1057|consen 81 LREPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNPFVINDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPNPKL 160 (1018)
T ss_pred eccccccCcccceEEEeccCCCChHHHHHHHHhcCCeeeccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCChHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC
Q 001944 86 DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT 165 (993)
Q Consensus 86 ~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t 165 (993)
++++|++|+|+|||++|.||||||||+|||||||||||+|+|||++|||||||||||+|+|++ .+|+.|||||||||+|
T Consensus 161 ~~lie~eD~vEVnGevf~KPFVEKPVs~EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~-~vRkeGSyIYEeFMpt 239 (1018)
T KOG1057|consen 161 CNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDS-SVRKEGSYIYEEFMPT 239 (1018)
T ss_pred hhhhcCCCeEEEcceeccCCcccCCCCcccccEEEEecCCCCccHHHHHHHhcccccccCCcc-ccccccceehhhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeCCCcEEEec
Q 001944 166 GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDV 245 (993)
Q Consensus 166 ~G~DIKVytVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~g~syV~DV 245 (993)
+|||||||||||+|+|||+||||||||+|+||+||||+||||.||++||.||+|||.||+|+||||||||++|+||||||
T Consensus 240 dgtDVKvYTVGp~YaHAEaRKSPvvDGkV~Rns~GKEvRYpv~Ls~~EK~iA~KVciAF~Q~VCGFDLLRa~G~SYVcDV 319 (1018)
T KOG1057|consen 240 DGTDVKVYTVGPDYAHAEARKSPVVDGKVERNSDGKEVRYPVILNSSEKQIARKVCIAFKQTVCGFDLLRANGKSYVCDV 319 (1018)
T ss_pred CCccceEEeeCcchhhhhhccCccccceeeecCCCceeeceeecChhhHHHHhHHHhhccccccchHHhhcCCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccccHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCccceEEEEEEEEcC
Q 001944 246 NGWSFVKNSYKYYDDAACVLRKMFLEAKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSGLGTFGQSEELRCVIAVMRHG 325 (993)
Q Consensus 246 NGwSFVK~n~kYYddcA~iL~~~~l~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~eLr~vvaViRHg 325 (993)
|||||||||+|||||||+||++||+.+.+++..+.+|+++||..+++ .++.+++ ++++++||||||||||||
T Consensus 320 NGfSFVKns~kYYDd~AkIL~~~~~~ak~~~~~~~iP~~~p~~~~~~---~~~~v~~-----~~g~~~elrcviaViRHg 391 (1018)
T KOG1057|consen 320 NGFSFVKNSNKYYDDCAKILGKMNLSARALAPASQIPWSLPGIRNEK---VEPWVPT-----SSGGMMELRCVIAVIRHG 391 (1018)
T ss_pred cceeeeecchhhhHHHHHHHhhhhhhhhccCccccCCCCCcccccCC---CCCceec-----CCCccceeeeeEEEEecC
Confidence 99999999999999999999999999999888888898888877655 2344443 567999999999999999
Q ss_pred CCCcccceeEEechHHHHHHHHhhcCCCCccceeeccHHhHHHHHHHHHhhccccCCCCCCCCchhhhhhhhhHHHHHHH
Q 001944 326 DRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRPGRESDSEAEDFEHSKKRIICVAI 405 (993)
Q Consensus 326 DRTPKQK~K~~~~~~~fi~L~~~~~~~~~~~e~kLk~~~qLq~vld~~r~~l~~~~~g~~~~~~~e~~e~~~Kl~ql~~v 405 (993)
||||||||||+|++++||+||++|+|++ ++|+|||+|.|||+|||++|.++++.+ ++++++.|...||+||++|
T Consensus 392 DRTPKQK~K~~vt~~~f~~L~ek~~G~~-~~e~klk~~~QLq~vLd~ar~ll~e~~-----~~~~~die~~~KleQlk~v 465 (1018)
T KOG1057|consen 392 DRTPKQKMKLSVTSPKFLGLFEKYDGYK-KEETKLKSANQLQEVLDAARLLLEEKE-----DKDAEDIEEAKKLEQLKNV 465 (1018)
T ss_pred CCCccceeeEEeccHHHHHHHHhhCCcc-ccceeeCCHHHHHHHHHHHHhhhcccc-----cCcccchhhHHHHHHHHHH
Confidence 9999999999999999999999999876 789999999999999999999998754 2234445668899999999
Q ss_pred HhcCCCCCCcce-eeccchhhhccccccccccCccceeEEEEeccCcch---------hhHHHhhc--c-CCCCcchhhh
Q 001944 406 LHLGGQFEKFFN-VQDVLLSIQCHLLLANLVSGQFIDFLIEQFYQDNGV---------NEIAYWWG--S-HSEGTGLLRL 472 (993)
Q Consensus 406 Le~~~~fsGinr-vQlKp~~~~~~~~~~~~~~~~~~~~lLIlKW~~GGE---------e~LG~~fR--Y-p~~~~gLLrL 472 (993)
|||||||||||| |||||+.| +..++++++.++...++||+|| ||| |+|||+|| | +|+|+|||||
T Consensus 466 LE~~ghFsGinrKVQlk~l~~-~~~k~se~e~~r~~~llliLKw--GGelT~agr~QAeeLGr~FR~~~~gg~g~gllrL 542 (1018)
T KOG1057|consen 466 LEMYGHFSGINRKVQLKPLKW-VYVKKSEGELEREPQLLLILKW--GGELTHAGRYQAEELGRQFRCDYPGGQGLGLLRL 542 (1018)
T ss_pred HHhhCCCCCccceeeeeeccc-cCCCCCccccccCcceeEEeee--CCEecchhHhhHHHHHHHHHhcCCCCCCcceeee
Confidence 999999999999 99999999 5556666666666789999999 999 99999999 5 5789999999
Q ss_pred hhcccccceEeecCCchHHHHHHHHHHhhccCCCCCCcceeeeEecCCCCcCCCccchHHHHHHHHHHHHHHhcCCCCCC
Q 001944 473 HSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKMIH 552 (993)
Q Consensus 473 hst~rhDlKIysSdEgRVq~TAaaFakg~L~legeLtPilv~lV~kd~~lLD~s~~a~~~m~~vK~kL~~lL~~~~~~~~ 552 (993)
||||||||||||||||||||||||||||||+|||+|||||||||+||+.|||++++|+++|++||++||+||+.|.++
T Consensus 543 hst~rhDlKIYaSdEgRVqmtAaaFAkgLL~lEgelTpiLvqmVkkdn~LLD~~~~as~~m~~vK~~L~~ilq~~~~~-- 620 (1018)
T KOG1057|consen 543 HSTYRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKKDNTLLDDDNAASSYMDKVKARLHEILQAGREF-- 620 (1018)
T ss_pred hhhhhccceeEecCcchHHHHHHHHHHHHHhhccCCcHHHHHHHHhcchhhcCcchhHHHHHHHHHHHHHHHhcCCcC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCCcCcccCCCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhchhcccCCCCCCCCChhhhhhccCCccchhhhccC
Q 001944 553 SNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQVRQLAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAG 632 (993)
Q Consensus 553 ~~~~~~~~w~~~~~~~~~~P~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 632 (993)
+++|+||.. + |+|++++.+++++|+.++..+++.+.. ..++ ..|+++.+|.+
T Consensus 621 ---~~e~~~~~~---~-P~~~~~l~~~ve~vk~~~k~~~e~~~~-------------~~~~--------~~i~v~~~~~r 672 (1018)
T KOG1057|consen 621 ---TPEFDWPEL---M-PNPSEVLTQVVELVKNPVKVCDENFAL-------------IEPL--------DHIDVERIQPR 672 (1018)
T ss_pred ---CCccchhhc---C-CcHhHHHHHHHHHHHhHHHHHHHhhhc-------------cccc--------cceeeecccCC
Confidence 477899975 3 599999999999999998887764321 1122 34889999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcccCCcccCCCCCcchhhhhhhhhccccCCcccHHHHHHHHHHhcceecccccCCCc
Q 001944 633 LPCGSEGFLLMYARWRKLERDLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGLDELFKVAQLLADGVIPNEYGINP 712 (993)
Q Consensus 633 ~~c~gE~~~L~~eRW~KL~~dF~~~k~~kfD~SKIpdiYD~iKYD~lHN~~l~l~~l~ELY~~aK~LaD~V~PqEYGI~~ 712 (993)
|+|++|+|+||++||+|||+|||+. .++||||||||||||||||+|||++|.++++.|||.+||.|||+|+||||||++
T Consensus 673 ~~~~sE~~~Lm~~RW~Kl~rdf~~k-~~r~DiSKIpdiYD~~KYD~~HN~~l~~~~~~ely~~ak~lad~vip~eYgi~~ 751 (1018)
T KOG1057|consen 673 WPCHSETPDLMRERWEKLERDFYNK-RERFDISKIPDIYDTIKYDLLHNRQLLLNGFDELYKYAKLLADIVIPQEYGINP 751 (1018)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHhhh-ccccCccccchHHhhhhHHhhcchhhhhccccHHHHHHHhhcccccccccCCCH
Confidence 9999999999999999999999975 599999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHhHHhhhhccccccccccccc-ccCCCC-CCccccccccccCCCCccCCCCC
Q 001944 713 KQKLKIGSKIARRLLGKLLIDLRNTREEAISVAELKSSQDQVSKSTKTE-KEDKDY-PPKLFIKADDTRRSSTTSDISMD 790 (993)
Q Consensus 713 ~EKl~IG~~~~~pLL~KI~~DL~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~ 790 (993)
+|||+||..+|.|||+||+.||+++++ +..++.+++.+++. .++.. .-...| .++..+......+-.. +..
T Consensus 752 ~~kl~I~~~~~~~ll~Ki~~dL~~~~e--~~~~et~~~~~p~~-~sp~~~~r~~lY~~sk~~v~sl~~~ryG~----~~~ 824 (1018)
T KOG1057|consen 752 QEKLKIGQGICTPLLGKILSDLVRTLE--LESAETKNRLNPVY-LSPRRHVRTRLYFTSKSHVHSLLLRRYGI----SDV 824 (1018)
T ss_pred HHhhhhhhhhcchhhhhhhHhhhcchh--hcchhhhcccCccc-cChhHHHHHHHhhhhHhhhhhhhhhhcCC----chh
Confidence 999999999999999999999999886 45666676666542 11111 000111 1222222222212111 111
Q ss_pred CCCCcccccccccCcccCCCCCCccceeeEEEeecchhHHHHHHHHHhcCCcccccccchhhhhhhhhhhcCCCCCcccc
Q 001944 791 QDDDDDKETQYRLDPKYANVKTPERHVRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMS 870 (993)
Q Consensus 791 ~~~~~~~E~~~RL~p~ya~V~SP~RhVRtrlYFTsESHIhsLLNvlr~~~l~~~~~~e~~~i~~~a~~~l~~i~ELdYlS 870 (993)
...++..++.+||.+.+.+..++.||++||+|||+|||||+|+||++||.++.+..|.+++++++|+..++..+|||||+
T Consensus 825 ~~ln~~~~t~~~L~~~~~~d~~~e~~~~~rlyFtreshi~~l~nv~~~~~~dEs~~g~~~~~~~~~l~r~~~~~eld~~~ 904 (1018)
T KOG1057|consen 825 EKLNDGLLTSIRLYEQILNDPTSERHFHTRLYFTRESHIYTLMNVIRYCNLDESDRGLPMKICRNALPRLCDLKELDYLS 904 (1018)
T ss_pred hhhcccchhceeechhhccCCcccccceeEEEeccchhhhhhhhHhhhccccccccCCccccCcccCcccccchhhhhHH
Confidence 22345678999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred cceEEEEecCCCCCCCCCeeEEEEEecCCCC-CCCCCcCCCccCCCCCCcccccC-CCccccccCCcccHHHHHHhhccC
Q 001944 871 YIVLRMFENTAVALEDPKRFRIELTFSRGAD-LSPLEKNDSEASSLHQEHTLPIM-GPERLQEVGSYLTLEKMEKMIRPF 948 (993)
Q Consensus 871 qIvf~lYE~~~~~~~~~~rf~Iei~~SpG~~-~~pl~~~~~~~~~ld~~H~l~~~-pr~~L~~~~~~l~l~~~~~~~~~~ 948 (993)
||||||||++.++ .++||+|||++||||+ .+||| .+|+.+|++||+ |+++|+ ++|+|++|++++++|
T Consensus 905 ~i~fel~e~t~~S--~~Kr~~~~lt~s~g~~~~~plD------~~l~~~~~ip~i~P~~~l~---~~Lsl~~v~~~lr~~ 973 (1018)
T KOG1057|consen 905 QIVFELFENTEAS--GPKRFSIRLTSSRGCDLSCPLD------ENLDARHYIPIIGPLESLT---NHLSLEQVEKKLRDF 973 (1018)
T ss_pred HHHHHHhcccccc--cCcccceEEeecCCccccCchh------hhhhccCcccccCcHHHHh---hccCHHHHHHHHHhh
Confidence 9999999999775 4699999999999998 45998 889999999999 999999 899999999999999
Q ss_pred CCCCCCCCCCCCCCCcceeeccchhHHHHHhccccCCCCcCcCCC
Q 001944 949 AMPAEDFPPPSTPAGFTGYFAKSASVLERLVNLWPFHKNANSNGK 993 (993)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 993 (993)
+++.. +|+..+|.++++++++..++++|++++||+++++.++|+
T Consensus 974 ~~~~~-~P~~~~~~~~~s~~s~~~~~~~r~~~~~~~~~~~~~sg~ 1017 (1018)
T KOG1057|consen 974 ATPVI-PPPRFTPVNFTSNSSKSAAKLERLVNLVPPLKNPASSGK 1017 (1018)
T ss_pred ccccc-CCcccCcccccccchhHHHHHHHHhhccCCccCccccCC
Confidence 99988 889999999999999999999999999999999878885
No 2
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.94 E-value=1.6e-27 Score=241.93 Aligned_cols=171 Identities=30% Similarity=0.438 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHH
Q 001944 54 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKEL 133 (993)
Q Consensus 54 ~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rL 133 (993)
.||..++++|+++|||+|+|.+++.. . +...++.-.+ ++|+|+||+.|. .|-|+. +
T Consensus 2 ~dK~~~~~~l~~~gipvP~t~~~~~~--~-------~~~~~~~~~~---~~p~ViKp~~g~-----------~G~gV~-~ 57 (190)
T PF08443_consen 2 EDKLLTLQLLAKAGIPVPETRVTNSP--E-------EAKEFIEELG---GFPVVIKPLRGS-----------SGRGVF-L 57 (190)
T ss_dssp HBHHHHHHHHHHTT-----EEEESSH--H-------HHHHHHHHH-----SSEEEE-SB------------------E-E
T ss_pred CCHHHHHHHHHHCCcCCCCEEEECCH--H-------HHHHHHHHhc---CCCEEEeeCCCC-----------CCCEEE-E
Confidence 68999999999999999999999762 1 1233343221 589999999997 455552 3
Q ss_pred HhhcCCCccccccccccc-ccCcceEEeeccCC-CCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH
Q 001944 134 FRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP 211 (993)
Q Consensus 134 frkign~sS~~~p~~~~~-r~~gsyIyEEFi~t-~G~DIKVytVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~ 211 (993)
++......+..+ .. ..+..+++|+||+. .|.|+|||+||+++++|+.|.++ +|+||+|.+.|+...++.|++
T Consensus 58 i~~~~~~~~~l~----~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~--~~d~r~n~~~g~~~~~~~l~~ 131 (190)
T PF08443_consen 58 INSPDELESLLD----AFKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSP--EGDFRTNLSRGGKVEPYDLPE 131 (190)
T ss_dssp EESHCHHHHHHH---------TTT-EEEE----SS---EEEEEETTEEEEEEE--------------------EE----H
T ss_pred ecCHHHHHHHHH----HHHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecC--cccchhhhccCceEEEecCCH
Confidence 332221111111 21 24677899999999 56999999999999999999997 889999999999999999999
Q ss_pred HHHHHHHHHHHHhCCceeEEEEEeeCCCcEEEeccCccccccc
Q 001944 212 NEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNS 254 (993)
Q Consensus 212 eEk~iA~ka~~afgq~VcGfDLLRs~g~syV~DVNGwSFVK~n 254 (993)
+.+++|.++++++|+++|||||+++++++||||||.++-.++.
T Consensus 132 e~~~~a~~~~~~lgl~~~giDi~~~~~~~~v~EvN~~~~~~~~ 174 (190)
T PF08443_consen 132 EIKELALKAARALGLDFAGIDILDTNDGPYVLEVNPNPGFRGI 174 (190)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEEEETTEEEEEEEETT---TTH
T ss_pred HHHHHHHHHHHHhCCCEEEEEEEecCCCeEEEEecCCchHhHH
Confidence 9999999999999999999999999999999999999877654
No 3
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.1e-26 Score=254.79 Aligned_cols=207 Identities=23% Similarity=0.306 Sum_probs=167.2
Q ss_pred CcCEEeecccCCCCh-HHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 15 ICDCLIAFYSSGYPL-EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL-~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
..|++|..-...|-. -.+++.++..+.++||+..+...++||..+++.|+++|||+|+|+++.+. ++
T Consensus 78 ~~D~i~~R~~~~~~~~~~~~~~~E~~G~~viN~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~------------~~ 145 (318)
T COG0189 78 ELDVIIMRKDPPFDFATRFLRLAERKGVPVINDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDP------------DE 145 (318)
T ss_pred cCCEEEEecCCchhhHHHHHHHHHHcCCeEECCHHHHHhhhhHHHHHHHHHhcCCCCCCEEEEcCH------------HH
Confidence 447777766555544 34566889999999999999999999999999999999999999999772 12
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc----ccccC--cceEEeeccCC-C
Q 001944 94 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR----RVRRE--GSYIYEEFMPT-G 166 (993)
Q Consensus 94 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~----~~r~~--gsyIyEEFi~t-~ 166 (993)
....-.+.++.|+|+||++|+ .|-|+ |+ +.+.. +++. ..... ..+|.||||++ +
T Consensus 146 ~~~~~~~~~g~pvVlKp~~Gs-----------~G~gV---~~-v~~~d----~~l~~~~e~~~~~~~~~~ivQeyi~~~~ 206 (318)
T COG0189 146 AAEFVAEHLGFPVVLKPLDGS-----------GGRGV---FL-VEDAD----PELLSLLETLTQEGRKLIIVQEYIPKAK 206 (318)
T ss_pred HHHHHHHhcCCCEEEeeCCCC-----------Cccce---EE-ecCCC----hhHHHHHHHHhccccceEehhhhcCccc
Confidence 223333455679999999999 55444 33 54444 2222 22333 46999999999 6
Q ss_pred CceeEEEEECCceeE--EEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeCCCcEEEe
Q 001944 167 GTDVKVYTVGPEYAH--AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCD 244 (993)
Q Consensus 167 G~DIKVytVG~~~vh--Ae~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~g~syV~D 244 (993)
+.|+||+++|+.+++ |++|.++ .|.||.|.|+|+...+++||++++++|.||++++|..+|||||+++++|.||||
T Consensus 207 ~~~rrivv~~~~~~~~y~~~R~~~--~~~~R~N~a~Gg~~e~~~l~~e~~elA~kaa~~lGl~~~GVDiie~~~g~~V~E 284 (318)
T COG0189 207 RDDRRVLVGGGEVVAIYALARIPA--SGDFRSNLARGGRAEPCELTEEEEELAVKAAPALGLGLVGVDIIEDKDGLYVTE 284 (318)
T ss_pred CCcEEEEEeCCEEeEEeeeccccC--CCCceeeccccccccccCCCHHHHHHHHHHHHHhCCeEEEEEEEecCCCcEEEE
Confidence 677788888888888 8899886 899999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccc
Q 001944 245 VNGWSFVKNS 254 (993)
Q Consensus 245 VNGwSFVK~n 254 (993)
||.-+-.++.
T Consensus 285 VN~sP~~~~~ 294 (318)
T COG0189 285 VNVSPTGKGE 294 (318)
T ss_pred EeCCCccccc
Confidence 9986655554
No 4
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.90 E-value=1.2e-23 Score=226.83 Aligned_cols=205 Identities=22% Similarity=0.307 Sum_probs=157.7
Q ss_pred CCcCEEeec-ccC-CCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 001944 14 PICDCLIAF-YSS-GYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 91 (993)
Q Consensus 14 P~cD~LIsF-~S~-GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~ 91 (993)
..+|++|.. ++. ++.-.-..+.++..+|+++|+..+..+++||..++++|+++|||+|+|.++.. +. +.
T Consensus 56 ~~~d~v~~~~~~~~~~~~~~~~~~le~~g~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~~~~--~~-------~~ 126 (300)
T PRK10446 56 PHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHS--PD-------DT 126 (300)
T ss_pred CCCCEEEEcCCCchhhHHHHHHHHHHHCCCceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEEeCC--HH-------HH
Confidence 358988874 332 13333446788888999999999999999999999999999999999998854 11 01
Q ss_pred cceee-ecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc-ccCcceEEeeccCC-CCc
Q 001944 92 EDFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPT-GGT 168 (993)
Q Consensus 92 ~d~i~-v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~-r~~gsyIyEEFi~t-~G~ 168 (993)
...++ .+ +.|+|+||++|. .|-|+. +++...+....++ .. ..+..+|+||||+. .|.
T Consensus 127 ~~~~~~~~----~~P~VvKP~~g~-----------~g~GV~-~v~~~~~~~~~~~----~~~~~~~~~lvQe~I~~~~g~ 186 (300)
T PRK10446 127 SDLIDMVG----GAPLVVKLVEGT-----------QGIGVV-LAETRQAAESVID----AFRGLNAHILVQEYIKEAQGC 186 (300)
T ss_pred HHHHHHhC----CCCEEEEECCCC-----------CcccEE-EEcCHHHHHHHHH----HHHhcCCCEEEEeeeccCCCc
Confidence 11121 11 479999999997 444543 2221111011111 11 23456999999987 799
Q ss_pred eeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeCCCcEEEeccCc
Q 001944 169 DVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGW 248 (993)
Q Consensus 169 DIKVytVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~g~syV~DVNGw 248 (993)
|+||+++|+++++|+.|.++ .|.|+.|.+.|+..+++.|+++.+++|.++++++|..++|||++.+.+++||+|||..
T Consensus 187 d~rv~vig~~~~~~~~r~~~--~~~~~~n~~~g~~~~~~~l~~~~~~~a~~a~~alg~~~~gvD~~~~~~g~~vlEvN~~ 264 (300)
T PRK10446 187 DIRCLVVGDEVVAAIERRAK--EGDFRSNLHRGGAASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNAS 264 (300)
T ss_pred eEEEEEECCEEEEEEEEecC--CCchhheeccCCeeccCCCCHHHHHHHHHHHHHhCCCEEEEEEEEcCCCcEEEEEECC
Confidence 99999999999999999886 6789999998889999999999999999999999999999999999777999999964
Q ss_pred c
Q 001944 249 S 249 (993)
Q Consensus 249 S 249 (993)
+
T Consensus 265 p 265 (300)
T PRK10446 265 P 265 (300)
T ss_pred C
Confidence 3
No 5
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.89 E-value=6.3e-23 Score=226.14 Aligned_cols=216 Identities=20% Similarity=0.215 Sum_probs=158.6
Q ss_pred CEEeecccCCCChHHHHHHHhhc-CCcccCCcchhhhhhhHHHHHHHHHhCC-------CCCCCEEEEeccCCCcccccc
Q 001944 17 DCLIAFYSSGYPLEKAESYATLR-KPFLVNELEPQHLLHDRRKVYEQLEKYG-------IPVPRYALVNREVPYQELDYF 88 (993)
Q Consensus 17 D~LIsF~S~GFPL~KAi~y~~lr-~p~~iNdl~~q~ll~DR~~v~qiL~~~g-------IP~P~t~~~~r~~p~~~~~~~ 88 (993)
|+.|--..+-.=-....+|.... +..+||.+.++..|.||..++++|++.| ||+|+++++....
T Consensus 68 DvilhK~~~~~~~~~~~~~~~e~pgv~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~-------- 139 (328)
T PLN02941 68 DVILHKLYGKEWRQQLEEYREKHPDVTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDE-------- 139 (328)
T ss_pred CEEEEecCCHHHHHHHHHHHHHCCCcEEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHH--------
Confidence 66665543321122344555443 4679999999999999999999999999 9999999997731
Q ss_pred cccccee--eecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCC
Q 001944 89 IEEEDFV--EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG 166 (993)
Q Consensus 89 ~e~~d~i--~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~ 166 (993)
..+ ...-..++.|+|.||+.|. |.-+.+....|-+..+.-. .+..|++||||+-+
T Consensus 140 ----~al~~~~~~~~l~~P~V~KPl~g~------------Gss~gh~m~lv~~~~~L~~-------l~~p~~lQEfVnh~ 196 (328)
T PLN02941 140 ----SSIPDAVALAGLKFPLVAKPLVAD------------GSAKSHKMSLAYDQEGLSK-------LEPPLVLQEFVNHG 196 (328)
T ss_pred ----HHHHHHHHHhcCCCCEEEeecccC------------CCccccceEEecCHHHHHh-------cCCcEEEEEecCCC
Confidence 111 0112346799999999993 2212233333433322111 23469999999999
Q ss_pred CceeEEEEECCceeEEEeeeCCCCCCeee---ecCCCC----------------ce-------eeeeeCCHHHHHHHHHH
Q 001944 167 GTDVKVYTVGPEYAHAEARKSPVVDGVVM---RNPDGK----------------EV-------RYPVLLTPNEKQMAREV 220 (993)
Q Consensus 167 G~DIKVytVG~~~vhAe~RKSP~vDG~vr---rN~~gk----------------e~-------r~~v~Lt~eEk~iA~ka 220 (993)
|.|+||||||+.+ +|+.|+| .+.|+ .|++.| +. ..+...+++-+++|.++
T Consensus 197 g~d~RVfVvGd~v-~~~~R~S---~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~ 272 (328)
T PLN02941 197 GVLFKVYVVGDYV-KCVRRFS---LPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLAREL 272 (328)
T ss_pred CEEEEEEEECCEE-EEEEecC---CcccccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHH
Confidence 9999999999995 9999998 56677 888866 32 44556677899999999
Q ss_pred HHHhCCceeEEEEEeeC---CCcEEEeccCccccccccccHHHHHHHHHH
Q 001944 221 CIAFRQAVCGFDLLRCE---GRSYVCDVNGWSFVKNSYKYYDDAACVLRK 267 (993)
Q Consensus 221 ~~afgq~VcGfDLLRs~---g~syV~DVNGwSFVK~n~kYYddcA~iL~~ 267 (993)
++++|+.++||||++.. ++.||+|||+++-+|+-..|+..-.+.|.+
T Consensus 273 r~alGl~l~GvDvI~~~~~~~~~~VidVN~fP~~k~~p~~~~~l~~~~~~ 322 (328)
T PLN02941 273 RRRLGLRLFNFDMIREHGTGDRYYVIDINYFPGYAKMPGYETVLTDFLLS 322 (328)
T ss_pred HHHhCCceEEEEEEeecCCCCceEEEEecCCCccccCCchHHHHHHHHHH
Confidence 99999999999999995 356799999999999999999544444433
No 6
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.86 E-value=1.8e-21 Score=205.57 Aligned_cols=209 Identities=19% Similarity=0.190 Sum_probs=156.6
Q ss_pred ccCCCCCCcCEEeec-ccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccc
Q 001944 8 NLGTRWPICDCLIAF-YSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELD 86 (993)
Q Consensus 8 ~~Ve~WP~cD~LIsF-~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~ 86 (993)
++...|..||+.|-. ++.+.++ .....++..+..++|+.....+++||..++++|+++|||+|+|.++... .
T Consensus 40 ~~~~~~~~~d~v~~r~~~~~~~~-~~~~~le~~g~~~~n~~~~~~~~~dK~~~~~~l~~~gip~P~t~~~~~~--~---- 112 (280)
T TIGR02144 40 ERPKELEDVDVAIIRCVSQSRAL-YSARLLEALGVPVINSSHVIEACGDKIFTYLKLAKAGVPTPRTYLAFDR--E---- 112 (280)
T ss_pred CCccccCCCCEEEEcCcchhhHH-HHHHHHHHCCCcEECcHHHHHHHhhHHHHHHHHHHCCcCCCCeEeeCCH--H----
Confidence 344689999998865 3344444 4445567788788999999999999999999999999999999988541 0
Q ss_pred ccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccc--ccccc--ccCcceEEeec
Q 001944 87 YFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHP--DVRRV--RREGSYIYEEF 162 (993)
Q Consensus 87 ~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p--~~~~~--r~~gsyIyEEF 162 (993)
+.... ...+++|+|+||..|. .|-|+. ++.+....... ..... ..+..+|+|||
T Consensus 113 ------~~~~~-~~~~~~P~vvKP~~g~-----------~g~gv~----~v~~~~~l~~~~~~~~~~~~~~~~~~ivQef 170 (280)
T TIGR02144 113 ------AALKL-AEALGYPVVLKPVIGS-----------WGRLVA----LIRDKDELESLLEHKEVLGGSQHKLFYIQEY 170 (280)
T ss_pred ------HHHHH-HHHcCCCEEEEECcCC-----------CcCCEE----EECCHHHHHHHHHHHHhhcCCcCCeEEEEcc
Confidence 11111 1234679999999986 233332 12211110000 00001 12457999999
Q ss_pred cCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeC-CCcE
Q 001944 163 MPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCE-GRSY 241 (993)
Q Consensus 163 i~t~G~DIKVytVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~-g~sy 241 (993)
|+..|.|++|+++|+.++|++.|.+ +.|+.|.+.|+...++.++++.+++|.++++++|..++|||++.+. |++|
T Consensus 171 I~~~~~d~~v~vig~~~~~~~~r~~----~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~~~lg~~~~~vD~~~~~~g~~~ 246 (280)
T TIGR02144 171 INKPGRDIRVFVIGDEAIAAIYRYS----NHWRTNTARGGKAEPCPLDEEVEELAVKAAEAVGGGVVAIDIFESKERGLL 246 (280)
T ss_pred cCCCCCceEEEEECCEEEEEEEEcC----CchhhhhhcCCceeccCCCHHHHHHHHHHHHHhCCCeEEEEEEEcCCCCEE
Confidence 9988999999999999999999976 5799999877888899999999999999999999999999999984 5799
Q ss_pred EEeccCcc
Q 001944 242 VCDVNGWS 249 (993)
Q Consensus 242 V~DVNGwS 249 (993)
|+|||.+.
T Consensus 247 v~EvN~~p 254 (280)
T TIGR02144 247 VNEVNHVP 254 (280)
T ss_pred EEEEeCCc
Confidence 99999763
No 7
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.85 E-value=2e-21 Score=203.15 Aligned_cols=205 Identities=24% Similarity=0.266 Sum_probs=156.1
Q ss_pred CCCcCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 001944 13 WPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 92 (993)
Q Consensus 13 WP~cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 92 (993)
||.+|+.+.....+.+--.+.++++..+.+++|+.....++.||..++++|+++|||+|+|..+... . +..
T Consensus 46 ~~~~d~v~~r~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~~~--~-------~~~ 116 (277)
T TIGR00768 46 LAELDVVIVRIVSMFRGLAVARYLESLGVPVINSSDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSP--E-------EAL 116 (277)
T ss_pred CCCCCEEEEechhHhhHHHHHHHHHHCCCeeeCCHHHHHHHhhHHHHHHHHHHCCCCCCCEEEeCCH--H-------HHH
Confidence 8889998876644444446777788788888999999999999999999999999999999988641 0 011
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc----cCcceEEeeccCC-CC
Q 001944 93 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR----REGSYIYEEFMPT-GG 167 (993)
Q Consensus 93 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r----~~gsyIyEEFi~t-~G 167 (993)
..+. .++.|+|+||..|. .|.|+. + +.+...... -...++ ..+.||+||||+. .|
T Consensus 117 ~~~~----~~~~p~vvKP~~g~-----------~g~gv~-~---i~~~~~l~~-~~~~~~~~~~~~~~~lvQe~I~~~~~ 176 (277)
T TIGR00768 117 KLIE----EIGFPVVLKPVFGS-----------WGRLVS-L---ARDKQAAET-LLEHFEQLNGPQNLFYVQEYIKKPGG 176 (277)
T ss_pred HHHH----hcCCCEEEEECcCC-----------CCCceE-E---EcCHHHHHH-HHHHHHHhcccCCcEEEEeeecCCCC
Confidence 1221 34579999999986 233332 1 111111100 000111 1357999999998 46
Q ss_pred ceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeCC-CcEEEecc
Q 001944 168 TDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEG-RSYVCDVN 246 (993)
Q Consensus 168 ~DIKVytVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~g-~syV~DVN 246 (993)
.|+||+++|+++++++.|.. .+.|+.|.+.|+...++.|+++.+++|.++++++|..+||||++.+.+ ++||+|||
T Consensus 177 ~~~rv~v~~~~~~~~~~r~~---~~~~~~n~~~g~~~~~~~l~~~~~~~a~~~~~~l~~~~~~vD~~~~~~g~~~viEiN 253 (277)
T TIGR00768 177 RDIRVFVVGDEVIAAIYRIT---SGHWRTNLARGGKAEPCPLTEEIEELAIKAAKALGLDVVGIDLLESEDRGLLVNEVN 253 (277)
T ss_pred ceEEEEEECCEEEEEEEEcC---CCchhhhhhcCCeeeecCCCHHHHHHHHHHHHHhCCCeEEEEEEEcCCCCeEEEEEc
Confidence 99999999999999998873 577999999888888999999999999999999999999999999854 79999999
Q ss_pred Ccc
Q 001944 247 GWS 249 (993)
Q Consensus 247 GwS 249 (993)
..+
T Consensus 254 ~~p 256 (277)
T TIGR00768 254 PNP 256 (277)
T ss_pred CCc
Confidence 754
No 8
>PRK05246 glutathione synthetase; Provisional
Probab=99.85 E-value=2.4e-21 Score=211.29 Aligned_cols=200 Identities=15% Similarity=0.169 Sum_probs=149.1
Q ss_pred CCCCCCcCEEeecccCCCCh-----HHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcc
Q 001944 10 GTRWPICDCLIAFYSSGYPL-----EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQE 84 (993)
Q Consensus 10 Ve~WP~cD~LIsF~S~GFPL-----~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~ 84 (993)
.-.||..|+++-.-..-|.. -..+++++.++..++|+......+.||+.+++++. ++|+|.++... .
T Consensus 74 ~~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~N~p~~l~~~~dK~~~~~l~~----~vP~T~~~~~~--~-- 145 (316)
T PRK05246 74 RLPLADFDVILMRKDPPFDMEYIYATYLLERAERPGTLVVNKPQSLRDANEKLFTLWFPE----LMPPTLVTRDK--A-- 145 (316)
T ss_pred cCccccCCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEECCHHHHHhCccHHHHHhhhc----cCCCEEEeCCH--H--
Confidence 34577799998653333332 13667778788999999999999999999999765 89999987641 1
Q ss_pred ccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc--cCcceEEeec
Q 001944 85 LDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR--REGSYIYEEF 162 (993)
Q Consensus 85 ~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r--~~gsyIyEEF 162 (993)
...++++-. +|+|+||+.|+ .|.|+-+ .++ ....+..-..... ....||+|+|
T Consensus 146 -----~~~~~~~~~-----~~vVlKP~~G~-----------~G~gV~~-i~~---~~~~~~~~~~~l~~~~~~~~lvQ~~ 200 (316)
T PRK05246 146 -----EIRAFRAEH-----GDIILKPLDGM-----------GGAGIFR-VKA---DDPNLGSILETLTEHGREPVMAQRY 200 (316)
T ss_pred -----HHHHHHHHC-----CCEEEEECCCC-----------CccceEE-EeC---CCccHHHHHHHHHHccCCeEEEEec
Confidence 112223212 38999999998 5545432 111 1111110000112 2458999999
Q ss_pred cCC-CCceeEEEEECCceeE-EEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHH---HHhCCceeEEEEEeeC
Q 001944 163 MPT-GGTDVKVYTVGPEYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC---IAFRQAVCGFDLLRCE 237 (993)
Q Consensus 163 i~t-~G~DIKVytVG~~~vh-Ae~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~---~afgq~VcGfDLLRs~ 237 (993)
|+. .+.|+||+++|++++| |+.|.++ .|.||+|.+.|+...++.||++++++|.+++ ++.|+.+|||||+
T Consensus 201 I~~~~~~D~Rv~vv~g~vv~~a~~R~~~--~~~~rtN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~gl~~~GVDli--- 275 (316)
T PRK05246 201 LPEIKEGDKRILLVDGEPVGYALARIPA--GGETRGNLAAGGRGEATPLTERDREICAAIGPELKERGLIFVGIDVI--- 275 (316)
T ss_pred cccCCCCCEEEEEECCEEhhheeEecCC--CCCcccCccCCceEeccCCCHHHHHHHHHHHHHHHHhCCCEEEEEEe---
Confidence 998 5789999999999999 9999886 7899999999999999999999999999999 6779999999999
Q ss_pred CCcEEEeccCc
Q 001944 238 GRSYVCDVNGW 248 (993)
Q Consensus 238 g~syV~DVNGw 248 (993)
+.||+|||..
T Consensus 276 -~~~l~EvN~~ 285 (316)
T PRK05246 276 -GDYLTEINVT 285 (316)
T ss_pred -CCEEEEEeCC
Confidence 3589999943
No 9
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.84 E-value=6.7e-21 Score=208.00 Aligned_cols=199 Identities=15% Similarity=0.190 Sum_probs=148.5
Q ss_pred CCCCCcCEEeecccCCCCh-----HHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccc
Q 001944 11 TRWPICDCLIAFYSSGYPL-----EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQEL 85 (993)
Q Consensus 11 e~WP~cD~LIsF~S~GFPL-----~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~ 85 (993)
-.|+..|++|-.--..|.. ...+++++..+..++|+......+.||..+++++. |+|+|++.+.. .
T Consensus 74 ~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~viN~p~~i~~~~dK~~~~~~~~----~vP~T~v~~~~--~--- 144 (312)
T TIGR01380 74 LSLGELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVINSPQGLRDANEKLFTLQFPK----VIPPTLVTRDK--A--- 144 (312)
T ss_pred cccccCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEEeCHHHHHhhhhHHHHhhCcC----CCCCEEEeCCH--H---
Confidence 4588899999764333332 24577777788899999999999999999888763 89999987541 1
Q ss_pred cccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc--cCcceEEeecc
Q 001944 86 DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR--REGSYIYEEFM 163 (993)
Q Consensus 86 ~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r--~~gsyIyEEFi 163 (993)
+..+++.-. .|+|+||+.|+ .|-|+-+ +......+..-+.... ....|++|+||
T Consensus 145 ----~~~~~~~~~-----g~vVvKPl~G~-----------~G~gv~~----v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI 200 (312)
T TIGR01380 145 ----EIRAFLAEH-----GDIVLKPLDGM-----------GGEGIFR----LDPGDPNFNSILETMTQRGREPVMAQRYL 200 (312)
T ss_pred ----HHHHHHHHc-----CCEEEEECCCC-----------CCceEEE----EcCCCccHHHHHHHHHhccCCcEEEEecc
Confidence 112222212 38999999997 4445432 2211111110000111 23579999999
Q ss_pred CC-CCceeEEEEECCcee-EEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHH---HHhCCceeEEEEEeeCC
Q 001944 164 PT-GGTDVKVYTVGPEYA-HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC---IAFRQAVCGFDLLRCEG 238 (993)
Q Consensus 164 ~t-~G~DIKVytVG~~~v-hAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~---~afgq~VcGfDLLRs~g 238 (993)
++ .+.|+||++||++++ ||+.|.++ +|+||.|.+.|+...+++||++++++|.+++ +++|+.+|||||+
T Consensus 201 ~~~~~~D~Rv~vv~g~vv~~ai~R~~~--~gd~r~N~~~Gg~~~~~~l~~e~~~ia~~~~~~~~~~gl~~agVDii---- 274 (312)
T TIGR01380 201 PEIKEGDKRILLIDGEPIGAAVARIPA--GGEFRGNLAVGGRGEATELSERDREICADVAPELKRRGLLFVGIDVI---- 274 (312)
T ss_pred ccccCCCEEEEEECCeEEEEEEEecCC--CCCccccccCCceeeccCCCHHHHHHHHHHHHHHHhcCCcEEEEEEe----
Confidence 98 789999999999975 69999886 7899999999999999999999999999998 7789999999999
Q ss_pred CcEEEeccCc
Q 001944 239 RSYVCDVNGW 248 (993)
Q Consensus 239 ~syV~DVNGw 248 (993)
++||+|||..
T Consensus 275 g~~v~EvN~~ 284 (312)
T TIGR01380 275 GGYLTEVNVT 284 (312)
T ss_pred CCEEEEEecC
Confidence 4799999954
No 10
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=99.82 E-value=8.1e-19 Score=186.72 Aligned_cols=151 Identities=23% Similarity=0.372 Sum_probs=105.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcccCCcccCCCCCcchhhhhhhhhccccCCcccHHHHHHHHHHhcceecccccCCCchh
Q 001944 635 CGSEGFLLMYARWRKLERDLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGLDELFKVAQLLADGVIPNEYGINPKQ 714 (993)
Q Consensus 635 c~gE~~~L~~eRW~KL~~dF~~~k~~kfD~SKIpdiYD~iKYD~lHN~~l~l~~l~ELY~~aK~LaD~V~PqEYGI~~~E 714 (993)
|.|+....+..+|..++..+|.. ...+.+++|++|+.+++|++++.. +..+.++|.. ||.+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------------~~~~~~- 259 (347)
T PF00328_consen 197 IPGEDNLTFFDVWAIFDDCLYEQ--IYNDGSPFPEWFTDMKEDALQLEY--LEDLKEYYQY------------YGYSDE- 259 (347)
T ss_dssp STTCEECTHHHHHHHHHHHHHHH--HHHTT-GGGGGSCHTSHHHHHHHH--HHHHHHHHHH------------CSTTHH-
T ss_pred cCccccccchhhhhhhhhhhhhh--ccCCCCCCchhhcccchHHHHHHh--hhhHHHHhhc------------ccCCch-
Confidence 56666667889999999999875 268999999999999999999877 3345556655 888887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHhHHhhhhcccccccccccccccCCCCCCccccccccccCCCCccCCCCCCCCC
Q 001944 715 KLKIGSKIARRLLGKLLIDLRNTREEAISVAELKSSQDQVSKSTKTEKEDKDYPPKLFIKADDTRRSSTTSDISMDQDDD 794 (993)
Q Consensus 715 Kl~IG~~~~~pLL~KI~~DL~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 794 (993)
++...+.||++.|+..+...-.. .
T Consensus 260 ---~~~~~~~~ll~~ll~~l~~~~~~-----------------------------------~------------------ 283 (347)
T PF00328_consen 260 ---IARLQGGPLLNELLRRLKQAING-----------------------------------N------------------ 283 (347)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHCHSS-----------------------------------T------------------
T ss_pred ---HHHHHHhHHHHHHHHHHhhcccc-----------------------------------c------------------
Confidence 45566678888888777753100 0
Q ss_pred cccccccccCcccCCCCCCccceeeEEEeecchhHHHHHHHHHhcCCcccccccchhhhhhhhhhhcCCCCCcccccceE
Q 001944 795 DDKETQYRLDPKYANVKTPERHVRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVL 874 (993)
Q Consensus 795 ~~~E~~~RL~p~ya~V~SP~RhVRtrlYFTsESHIhsLLNvlr~~~l~~~~~~e~~~i~~~a~~~l~~i~ELdYlSqIvf 874 (993)
++.+..|-.+||+..+.|..||.+| |+.....+. .. .--.|-|+|+|
T Consensus 284 -----------------~~~~~~k~~~~s~HD~tl~~ll~~L---gl~~~~~~~-----------~~--~~pp~as~l~f 330 (347)
T PF00328_consen 284 -----------------SPGRPPKLVLYSGHDTTLMPLLSAL---GLDNYSPPY-----------QS--YWPPYASNLVF 330 (347)
T ss_dssp -----------------CSCSSCSEEEEEE-HHHHHHHHHHT---TCTTTSTTT-----------HS--SCSSTT-EEEE
T ss_pred -----------------cccccceEEEEecCHHHHHHHHHHh---CCCccCccc-----------cC--CCCCccceeEE
Confidence 0122367899999999999999999 455432110 01 33468899999
Q ss_pred EEEecCCCCCCCCCeeEEEEEec
Q 001944 875 RMFENTAVALEDPKRFRIELTFS 897 (993)
Q Consensus 875 ~lYE~~~~~~~~~~rf~Iei~~S 897 (993)
|||++ +.+.|.||+.+.
T Consensus 331 El~~~------~~~~~~Vr~~yN 347 (347)
T PF00328_consen 331 ELYRD------SGKNYYVRVLYN 347 (347)
T ss_dssp EEEEE------TTTEEEEEEEET
T ss_pred EEEEe------CCCcEEEEEEEC
Confidence 99998 223499999874
No 11
>PRK12458 glutathione synthetase; Provisional
Probab=99.81 E-value=5.8e-20 Score=203.16 Aligned_cols=196 Identities=18% Similarity=0.217 Sum_probs=144.2
Q ss_pred CCCCcCEEeecccCCCChHHHHHHH-----------hhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccC
Q 001944 12 RWPICDCLIAFYSSGYPLEKAESYA-----------TLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREV 80 (993)
Q Consensus 12 ~WP~cD~LIsF~S~GFPL~KAi~y~-----------~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~ 80 (993)
.|..+|+++-.---.|.-+ -.+|+ +..+.+++|+......+.||...+++++ +++|+|++.+..
T Consensus 76 ~l~~~d~V~~R~~~~~~~~-~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~- 150 (338)
T PRK12458 76 PLAGFDVIFLRANPPLDPL-ARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQSFPE---EVRPTTHISRNK- 150 (338)
T ss_pred chhhCCEEEEeCCCCCChH-HHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHhhcc---CCCCCEEEeCCH-
Confidence 4788899986543333321 23333 4567889999999999999998876544 789999988541
Q ss_pred CCccccccccccceee-ecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcC--CCcccccccccccccCcce
Q 001944 81 PYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVG--NRSSEFHPDVRRVRREGSY 157 (993)
Q Consensus 81 p~~~~~~~~e~~d~i~-v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkig--n~sS~~~p~~~~~r~~gsy 157 (993)
. +..++++ .++ .|+|+||++|+ .|.|+.+ +..-. |..+.++ .+...+.+
T Consensus 151 -~-------~~~~~~~~~~~----~pvVvKPl~G~-----------gG~gV~~-v~~~~~~~~~~ile----~~~~~~~~ 202 (338)
T PRK12458 151 -E-------YIREFLEESPG----DKMILKPLQGS-----------GGQGVFL-IEKSAQSNLNQILE----FYSGDGYV 202 (338)
T ss_pred -H-------HHHHHHHHcCC----CeEEEEECCCC-----------CccCeEE-EecCChhhHHHHHH----HHhhCCCE
Confidence 1 1122222 222 36999999997 4444431 11100 0111111 12235689
Q ss_pred EEeeccCC-CCceeEEEEECCcee------EEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHh---CCc
Q 001944 158 IYEEFMPT-GGTDVKVYTVGPEYA------HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF---RQA 227 (993)
Q Consensus 158 IyEEFi~t-~G~DIKVytVG~~~v------hAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~af---gq~ 227 (993)
|+||||+. .+.|+||++||++++ ||+.|.+. .|+||+|.+-|+...++.||++++++|.+++.++ |+.
T Consensus 203 ivQeyI~~~~~gDiRv~vv~g~~v~~~g~~~a~~R~~~--~~d~RsN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~GL~ 280 (338)
T PRK12458 203 IAQEYLPGAEEGDVRILLLNGEPLERDGHYAAMRRVPA--GGDVRSNVHAGGSVVKHTLTKEELELCEAIRPKLVRDGLF 280 (338)
T ss_pred EEEEcccCCCCCCEEEEEECCEEEeeccceeEEEEecC--CCCeeecccCCCcccCcCCCHHHHHHHHHHHHHHhhcCCe
Confidence 99999998 678999999999999 99999875 6899999998888999999999999999999988 999
Q ss_pred eeEEEEEeeCCCcEEEecc
Q 001944 228 VCGFDLLRCEGRSYVCDVN 246 (993)
Q Consensus 228 VcGfDLLRs~g~syV~DVN 246 (993)
+|||||+ +.+|+|||
T Consensus 281 ~~gVDli----~~~l~EIN 295 (338)
T PRK12458 281 FVGLDIV----GDKLVEVN 295 (338)
T ss_pred EEeEEEE----CCEEEEEe
Confidence 9999999 46899999
No 12
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.73 E-value=1.1e-17 Score=184.23 Aligned_cols=185 Identities=17% Similarity=0.122 Sum_probs=132.1
Q ss_pred ccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceee-ecCeeccCcEEEeeccccCcceeEE
Q 001944 43 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIY 121 (993)
Q Consensus 43 ~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~-v~g~~~~kPfVeKpv~GedHni~IY 121 (993)
-.||=+--.++.||..+.++|.++|||+|+|.++....- ..++..+ +.+ ..|+|+||++|+
T Consensus 25 ~~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~--------~~~~l~~~~~~---~~~VVVKPl~Gs------- 86 (317)
T TIGR02291 25 RYNKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQA--------EVKTIHNIVKD---HPDFVIKPAQGS------- 86 (317)
T ss_pred hcCCchhccccccHHHHHHHHHHcCCCCCCEEEecCchh--------hHHHHHHHHcc---CCCEEEEECCCC-------
Confidence 357778888999999999999999999999998866210 0122222 222 247999999999
Q ss_pred eccCCCChHHHHHhhcCCCc------cc-----cccccc----cc-ccC--cceEEeeccCCC-----------CceeEE
Q 001944 122 YPSSAGGGMKELFRKVGNRS------SE-----FHPDVR----RV-RRE--GSYIYEEFMPTG-----------GTDVKV 172 (993)
Q Consensus 122 yp~~~GgG~~rLfrkign~s------S~-----~~p~~~----~~-r~~--gsyIyEEFi~t~-----------G~DIKV 172 (993)
+|-|+. +.....+.. .. ++..+. .+ ... ..+.|+||+... +.||||
T Consensus 87 ----~GrGI~-~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV 161 (317)
T TIGR02291 87 ----GGKGIL-VITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRI 161 (317)
T ss_pred ----CccCeE-EEEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEE
Confidence 777764 333221100 00 000000 00 112 223445664332 389999
Q ss_pred EEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCC--------------------------------HHHHHHHHHH
Q 001944 173 YTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT--------------------------------PNEKQMAREV 220 (993)
Q Consensus 173 ytVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt--------------------------------~eEk~iA~ka 220 (993)
+|||++.++||.|.+. -.|.|+.|.|.|++..++.|. ++-.++|.+|
T Consensus 162 ~vv~~~~vaa~~R~~~-~~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A 240 (317)
T TIGR02291 162 IVFKGYPVMAMMRLPT-RASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASC 240 (317)
T ss_pred EEECCEEEEEEEEccC-ccCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHH
Confidence 9999999999999762 257899999999999988886 6888999999
Q ss_pred HHHhCCceeEEEEEee-CCCcEEEeccCcccc
Q 001944 221 CIAFRQAVCGFDLLRC-EGRSYVCDVNGWSFV 251 (993)
Q Consensus 221 ~~afgq~VcGfDLLRs-~g~syV~DVNGwSFV 251 (993)
++++|..++|+|++.+ +++++|+|||+-+-.
T Consensus 241 ~~~~g~~~~GvDii~~~~~g~~VlEVN~~Pg~ 272 (317)
T TIGR02291 241 WELTGLGYMGVDMVLDKEEGPLVLELNARPGL 272 (317)
T ss_pred HHhcCCCeEEEEEEEeCCCCEEEEEeCCCCCC
Confidence 9999999999999986 789999999976543
No 13
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.72 E-value=9.3e-18 Score=196.23 Aligned_cols=178 Identities=22% Similarity=0.322 Sum_probs=133.2
Q ss_pred ccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEe
Q 001944 43 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 122 (993)
Q Consensus 43 ~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYy 122 (993)
.+|+..+..++.||..+.++|+++|||+|++.++... . +...+++ .++ |+|+||++|+
T Consensus 285 ~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~~~~~--~-------~~~~~~~----~~G-~vVVKP~~G~-------- 342 (547)
T TIGR03103 285 ELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNG--E-------AVEAFLA----EHG-AVVVKPVRGE-------- 342 (547)
T ss_pred CCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCH--H-------HHHHHHH----HhC-CEEEEECCCC--------
Confidence 6688899999999999999999999999999998651 0 0111222 233 7999999997
Q ss_pred ccCCCChHHHHHhhcCCCcccccccccc-cccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCC--CCe------
Q 001944 123 PSSAGGGMKELFRKVGNRSSEFHPDVRR-VRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV------ 193 (993)
Q Consensus 123 p~~~GgG~~rLfrkign~sS~~~p~~~~-~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~v--DG~------ 193 (993)
.|.|+. + .+.+.... ..-+.. .+....+|.|+||+ |.|+||+|||+++++|+.|..|-| ||.
T Consensus 343 ---~G~Gv~-v--~v~~~~eL-~~a~~~a~~~~~~vlvEe~i~--G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~L 413 (547)
T TIGR03103 343 ---QGKGIS-V--DVRTPDDL-EAAIAKARQFCDRVLLERYVP--GEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDL 413 (547)
T ss_pred ---CCcCeE-E--ecCCHHHH-HHHHHHHHhcCCcEEEEEecc--CCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHH
Confidence 565653 2 12222111 100001 12345799999994 999999999999999999999854 442
Q ss_pred ------------------------------------------------eeecCCCCceeeee--eCCHHHHHHHHHHHHH
Q 001944 194 ------------------------------------------------VMRNPDGKEVRYPV--LLTPNEKQMAREVCIA 223 (993)
Q Consensus 194 ------------------------------------------------vrrN~~gke~r~~v--~Lt~eEk~iA~ka~~a 223 (993)
.++|+|-|+....| .+.++.+++|.+|+++
T Consensus 414 ie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~ 493 (547)
T TIGR03103 414 IEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARA 493 (547)
T ss_pred HHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHH
Confidence 25788877777777 7999999999999999
Q ss_pred hCCceeEEEEEeeC-CCc--EEEeccCcccc
Q 001944 224 FRQAVCGFDLLRCE-GRS--YVCDVNGWSFV 251 (993)
Q Consensus 224 fgq~VcGfDLLRs~-g~s--yV~DVNGwSFV 251 (993)
+|+.||||||+... .+| +|||||--+-.
T Consensus 494 ~gl~~~GvD~i~~~~~~p~~~iiEvN~~Pgl 524 (547)
T TIGR03103 494 LDIPVVGIDFLVPDVTGPDYVIIEANERPGL 524 (547)
T ss_pred hCCCeEEEEEEeccCCCCCeEEEEecCCccc
Confidence 99999999999873 445 79999965544
No 14
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.67 E-value=1.1e-16 Score=192.78 Aligned_cols=182 Identities=21% Similarity=0.324 Sum_probs=136.0
Q ss_pred ccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEe
Q 001944 43 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 122 (993)
Q Consensus 43 ~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYy 122 (993)
.-++..+..++.||..+.++|+++|||+|++.++... ++.... -..+++|+|+||.+|.
T Consensus 202 ~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~------------~~a~~~-a~~iG~PvVVKP~~G~-------- 260 (727)
T PRK14016 202 DQTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSA------------EDAWEA-AEEIGYPVVVKPLDGN-------- 260 (727)
T ss_pred CCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCH------------HHHHHH-HHHcCCCEEEEECCCC--------
Confidence 4667778899999999999999999999999988551 222221 1245789999999997
Q ss_pred ccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCC--CCe------
Q 001944 123 PSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV------ 193 (993)
Q Consensus 123 p~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~v--DG~------ 193 (993)
.|.|+. + ++.+....-. -.. ..+....+|+||||+ |.|+||++||+++++|+.|.+|-+ ||.
T Consensus 261 ---~G~GV~-~--~v~~~~el~~-a~~~a~~~~~~viVEe~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~L 331 (727)
T PRK14016 261 ---HGRGVT-V--NITTREEIEA-AYAVASKESSDVIVERYIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIREL 331 (727)
T ss_pred ---CCCceE-E--ecCCHHHHHH-HHHHHHHhCCeEEEEEecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHH
Confidence 455553 1 1222111100 000 112346799999996 999999999999999999999855 332
Q ss_pred -------------------------------------------------ee--ecCCCCceeeeee--CCHHHHHHHHHH
Q 001944 194 -------------------------------------------------VM--RNPDGKEVRYPVL--LTPNEKQMAREV 220 (993)
Q Consensus 194 -------------------------------------------------vr--rN~~gke~r~~v~--Lt~eEk~iA~ka 220 (993)
+| .|.+.|+....+. ++|+.+++|.+|
T Consensus 332 i~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~a 411 (727)
T PRK14016 332 IEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERA 411 (727)
T ss_pred HHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHH
Confidence 23 3888888888885 999999999999
Q ss_pred HHHhCCceeEEEEEeeC-------CCcEEEeccCccccccc
Q 001944 221 CIAFRQAVCGFDLLRCE-------GRSYVCDVNGWSFVKNS 254 (993)
Q Consensus 221 ~~afgq~VcGfDLLRs~-------g~syV~DVNGwSFVK~n 254 (993)
++++|+.||||||+... .+..|||||.-+-++..
T Consensus 412 a~~~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~~ 452 (727)
T PRK14016 412 AKIIGLDIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRMH 452 (727)
T ss_pred HHhcCCCEEEEEEEecCcccccccCCcEEEEEcCCcchhhc
Confidence 99999999999999853 45689999988776653
No 15
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.65 E-value=2e-16 Score=193.57 Aligned_cols=175 Identities=22% Similarity=0.297 Sum_probs=129.4
Q ss_pred CCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEecc
Q 001944 45 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 124 (993)
Q Consensus 45 Ndl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~ 124 (993)
++..+..++.||..+.++|+++|||+|++.++... ++..+. -..+++|+|+||.+|.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~s~------------~ea~~~-~~~ig~PvVVKP~~g~---------- 259 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDAGVPVPEGTVVQSA------------EDAWEA-AQDLGYPVVIKPYDGN---------- 259 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEECCH------------HHHHHH-HHHcCCCEEEEECCCC----------
Confidence 55667889999999999999999999999988551 122221 1235689999999997
Q ss_pred CCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCC-----------
Q 001944 125 SAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG----------- 192 (993)
Q Consensus 125 ~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~vDG----------- 192 (993)
+|.|+. + .+.+....-.. .. .......+|+|+||+ |+|+||++||+++++|+.|.+|.|-|
T Consensus 260 -~G~GV~-l--~v~s~~el~~a-~~~a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi~ 332 (864)
T TIGR02068 260 -HGRGVT-I--NILTRDEIESA-YEAAVEESSGVIVERFIT--GRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELIE 332 (864)
T ss_pred -CccCEE-E--EeCCHHHHHHH-HHHHHhhCCcEEEEEecc--CCEEEEEEECCEEEEEEEecCCceecCccccHHHHHH
Confidence 444542 1 11111111000 00 112346799999995 89999999999999999999997655
Q ss_pred ------------------------------------------------eeeecCCCCceeeee--eCCHHHHHHHHHHHH
Q 001944 193 ------------------------------------------------VVMRNPDGKEVRYPV--LLTPNEKQMAREVCI 222 (993)
Q Consensus 193 ------------------------------------------------~vrrN~~gke~r~~v--~Lt~eEk~iA~ka~~ 222 (993)
..++|.+-|+...-+ .++|+.+++|.+||+
T Consensus 333 ~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa~ 412 (864)
T TIGR02068 333 QINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAAK 412 (864)
T ss_pred HhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHHH
Confidence 225677788887777 999999999999999
Q ss_pred HhCCceeEEEEEee-------CCCcEEEeccCcc
Q 001944 223 AFRQAVCGFDLLRC-------EGRSYVCDVNGWS 249 (993)
Q Consensus 223 afgq~VcGfDLLRs-------~g~syV~DVNGwS 249 (993)
++|++||||||+-. ..+..|||||+-+
T Consensus 413 ~~gl~i~gvD~i~~di~~~~~~~~~~iiEvN~~p 446 (864)
T TIGR02068 413 IIGLDIAGVDIVTEDISRPLRDTDGAIVEVNAAP 446 (864)
T ss_pred HhCCCeEEEEEEecCCCCCccccCcEEEEEcCCc
Confidence 99999999999763 2234799999654
No 16
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.61 E-value=1.6e-15 Score=183.02 Aligned_cols=183 Identities=18% Similarity=0.177 Sum_probs=127.3
Q ss_pred cccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEE
Q 001944 42 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 121 (993)
Q Consensus 42 ~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IY 121 (993)
...|.+.+-.+++||..+.++|+++|||+|++.++... ++....-....++|+|+||++|.
T Consensus 475 t~~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~~~~~------------e~a~~~~~~~~g~PvVVKP~~g~------- 535 (752)
T PRK02471 475 TSKDNYISPLIMENKVVTKKILAEAGFPVPAGDEFTSL------------EEALADYSLFADKAIVVKPKSTN------- 535 (752)
T ss_pred cCCCHHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEcCH------------HHHHHHHHHhcCCCEEEEECCCC-------
Confidence 46677777889999999999999999999999988541 12221111112579999999998
Q ss_pred eccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeee------
Q 001944 122 YPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM------ 195 (993)
Q Consensus 122 yp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~vDG~vr------ 195 (993)
.|-|+. +++.+.+.......-....+.+..+|+||||+ |+|+||+|||+++++|+.|.+|.|.|+=+
T Consensus 536 ----~G~GV~-~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~--G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eL 608 (752)
T PRK02471 536 ----FGLGIS-IFKEPASLEDYEKALEIAFREDSSVLVEEFIV--GTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVREL 608 (752)
T ss_pred ----CcCCeE-EecCcCCHHHHHHHHHHHHhcCCcEEEEeccc--CCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHH
Confidence 666663 55444433322221000123456799999995 99999999999999999999996644311
Q ss_pred ---ec--------------------------------------------------CCCCceeee--eeCCHHHHHHHHHH
Q 001944 196 ---RN--------------------------------------------------PDGKEVRYP--VLLTPNEKQMAREV 220 (993)
Q Consensus 196 ---rN--------------------------------------------------~~gke~r~~--v~Lt~eEk~iA~ka 220 (993)
.| .+-|+...- -.+.++-+++|.+|
T Consensus 609 i~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~a 688 (752)
T PRK02471 609 VAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKA 688 (752)
T ss_pred HHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHH
Confidence 11 221211111 14667779999999
Q ss_pred HHHhCCceeEEEEEeeC-------C--CcEEEeccCccc
Q 001944 221 CIAFRQAVCGFDLLRCE-------G--RSYVCDVNGWSF 250 (993)
Q Consensus 221 ~~afgq~VcGfDLLRs~-------g--~syV~DVNGwSF 250 (993)
|+++|+.||||||+-.. . +..|||||+-+-
T Consensus 689 a~~igl~~~GvDii~~di~~p~~~~~~~~~IiEvN~~P~ 727 (752)
T PRK02471 689 AKALGAKICGVDLIIPDLTQPASPEHPNYGIIELNFNPA 727 (752)
T ss_pred HHhcCCCEEEEEEEeCCCcccccccCCCeEEEEecCCCc
Confidence 99999999999999653 1 456999997653
No 17
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.60 E-value=3.9e-14 Score=152.21 Aligned_cols=203 Identities=16% Similarity=0.188 Sum_probs=140.3
Q ss_pred CCCcCEEeecccCCCChHH-HHHHHhhcCCccc-CCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccc
Q 001944 13 WPICDCLIAFYSSGYPLEK-AESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIE 90 (993)
Q Consensus 13 WP~cD~LIsF~S~GFPL~K-Ai~y~~lr~p~~i-Ndl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e 90 (993)
|..+|+.+..+...+..+- .-+.++..+...+ ++.....++.||..+.++|+++|||+|++..+...
T Consensus 54 ~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~----------- 122 (304)
T PRK01372 54 ELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLTRE----------- 122 (304)
T ss_pred cCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCc-----------
Confidence 4567998877544344432 3345555565555 45789999999999999999999999999998762
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccc-cccCcceEEeeccCCCCce
Q 001944 91 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRR-VRREGSYIYEEFMPTGGTD 169 (993)
Q Consensus 91 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~-~r~~gsyIyEEFi~t~G~D 169 (993)
++.... -..++.|+|+||..|. .|.|+. ++.|.....+ -+.. ......+|+||||+ |++
T Consensus 123 -~~~~~~-~~~~~~P~ivKP~~g~-----------~s~Gv~----~v~~~~el~~-~~~~~~~~~~~~lvEe~i~--G~E 182 (304)
T PRK01372 123 -EDLLAA-IDKLGLPLVVKPAREG-----------SSVGVS----KVKEEDELQA-ALELAFKYDDEVLVEKYIK--GRE 182 (304)
T ss_pred -chHHHH-HhhcCCCEEEeeCCCC-----------CCCCEE----EeCCHHHHHH-HHHHHHhcCCcEEEEcccC--CEE
Confidence 111111 1234689999999985 333332 2322221111 0000 12356799999997 899
Q ss_pred eEEEEECCceeEEEeeeCCCCCC--eeeecCCCCceee--eeeCCHHH----HHHHHHHHHHhCC-ceeEEEEEeeC-CC
Q 001944 170 VKVYTVGPEYAHAEARKSPVVDG--VVMRNPDGKEVRY--PVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCE-GR 239 (993)
Q Consensus 170 IKVytVG~~~vhAe~RKSP~vDG--~vrrN~~gke~r~--~v~Lt~eE----k~iA~ka~~afgq-~VcGfDLLRs~-g~ 239 (993)
+.|.++|+.+.++..+..+ .| .++.+.+.|+..+ |..+++++ +++|.++++++|. .+|+||++.++ |+
T Consensus 183 ~~v~vi~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~ 260 (304)
T PRK01372 183 LTVAVLGGKALPVIEIVPA--GEFYDYEAKYLAGGTQYICPAGLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGK 260 (304)
T ss_pred EEEEEECCCccceEEEEec--CCEEeeeccccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCC
Confidence 9999999999888877663 33 4677777665443 33577653 6789999999998 48999999996 67
Q ss_pred cEEEeccCc
Q 001944 240 SYVCDVNGW 248 (993)
Q Consensus 240 syV~DVNGw 248 (993)
+||+|||..
T Consensus 261 ~~viEvN~~ 269 (304)
T PRK01372 261 PYLLEVNTQ 269 (304)
T ss_pred EEEEEecCC
Confidence 999999964
No 18
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.51 E-value=3.6e-14 Score=170.43 Aligned_cols=175 Identities=23% Similarity=0.330 Sum_probs=117.4
Q ss_pred CcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeec-cCcEEEeeccccCcceeEEecc
Q 001944 46 ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRF-WKPFVEKPVHGDDHSIMIYYPS 124 (993)
Q Consensus 46 dl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~-~kPfVeKpv~GedHni~IYyp~ 124 (993)
+..+-.++.||..+-++|+++|||+|...++... ++....- ..+ ++|+|+||++|.
T Consensus 466 S~ia~~i~~DK~~TK~iL~~aGIPVP~g~~~~~~------------~~a~~~~-~~~~g~PVVVKP~~g~---------- 522 (737)
T TIGR01435 466 NYVSPLIMENKVVTKKVLAEAGFRVPFGDEFSSQ------------ALALEAF-SLFENKAIVVKPKSTN---------- 522 (737)
T ss_pred cHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCH------------HHHHHHH-HHhcCCCEEEeeCCCC----------
Confidence 3344589999999999999999999999888551 1111111 112 479999999998
Q ss_pred CCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCC--CCe--ee----
Q 001944 125 SAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV--VM---- 195 (993)
Q Consensus 125 ~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~v--DG~--vr---- 195 (993)
+|-|+. +++.+.+.. ++..-+. ..+.+..+|+||||+ |+|+||+|+|+++++|+.|.+|-| ||+ ++
T Consensus 523 -~G~GVs-i~~~~~~~e-el~~Al~~A~~~~~~VLVEefI~--G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eLI~ 597 (737)
T TIGR01435 523 -YGLGIT-IFKNGFTLE-DFQEALNIAFSEDSSVIIEEFLP--GTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRELVA 597 (737)
T ss_pred -CcCCeE-EecCcCCHH-HHHHHHHHHHhcCCeEEEEeccc--CCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHHHH
Confidence 555653 333221111 1111111 124466799999996 999999999999999999999877 443 11
Q ss_pred -ecC---CCCcee-----------------------------------------------eee-eCCHHHHHHHHHHHHH
Q 001944 196 -RNP---DGKEVR-----------------------------------------------YPV-LLTPNEKQMAREVCIA 223 (993)
Q Consensus 196 -rN~---~gke~r-----------------------------------------------~~v-~Lt~eEk~iA~ka~~a 223 (993)
.|. .|++.+ -.+ .+.++-+++|.+||+|
T Consensus 598 ~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~a 677 (737)
T TIGR01435 598 EKNTDPLRGTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATA 677 (737)
T ss_pred HhccCcccCCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHh
Confidence 121 122212 122 4456779999999999
Q ss_pred hCCceeEEEEEeeC-C-------C-cEEEeccCc
Q 001944 224 FRQAVCGFDLLRCE-G-------R-SYVCDVNGW 248 (993)
Q Consensus 224 fgq~VcGfDLLRs~-g-------~-syV~DVNGw 248 (993)
+|+.||||||+-.. . . .-|||||--
T Consensus 678 lgl~i~GVDii~~di~~p~~~~~~~~~iiEvN~~ 711 (737)
T TIGR01435 678 VGAAICGVDLIIPDETIPDTDKHAIWGVIEANFN 711 (737)
T ss_pred cCCCEEEEEEEecCCCCCccccccceEEEEEcCC
Confidence 99999999999541 1 1 238999943
No 19
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.48 E-value=6.4e-13 Score=143.33 Aligned_cols=207 Identities=15% Similarity=0.183 Sum_probs=130.5
Q ss_pred CcCEEeecccCCC-Ch-HHHHHHHhhcCCcccC-CcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 001944 15 ICDCLIAFYSSGY-PL-EKAESYATLRKPFLVN-ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 91 (993)
Q Consensus 15 ~cD~LIsF~S~GF-PL-~KAi~y~~lr~p~~iN-dl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~ 91 (993)
.+|+++... .|. .. -...+.++..+...+| +..+..+++||..+.++|+++|||+|++.++.++ +. . .
T Consensus 63 ~~D~v~~~~-~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~-~~-~------~ 133 (315)
T TIGR01205 63 GIDVVFPVL-HGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQN-RA-S------A 133 (315)
T ss_pred CCCEEEEec-CCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEecc-cc-c------c
Confidence 468888743 333 22 2556677888866666 5889999999999999999999999999998731 10 0 0
Q ss_pred cce-eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCce
Q 001944 92 EDF-VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTD 169 (993)
Q Consensus 92 ~d~-i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~D 169 (993)
.+. +.-....++.|+|+||..|. .|-|+ .++.|....... +. ....+..+|+||||+ |++
T Consensus 134 ~~~~~~~~~~~~~~P~vvKP~~~~-----------~s~Gv----~~v~~~~el~~~-~~~~~~~~~~~lvEe~i~--G~e 195 (315)
T TIGR01205 134 DELECEQVAEPLGFPVIVKPAREG-----------SSVGV----SKVKSEEELQAA-LDEAFEYDEEVLVEQFIK--GRE 195 (315)
T ss_pred hhhhHHHHHHhcCCCEEEEeCCCC-----------CccCE----EEECCHHHHHHH-HHHHHhcCCcEEEEcCCC--CEE
Confidence 000 00001235689999999975 22232 122222111110 00 112356799999995 999
Q ss_pred eEEEEEC-CceeEEEeeeCCCCC-CeeeecCCCCcee--eeeeCCHHH----HHHHHHHHHHhCC-ceeEEEEEeeC-CC
Q 001944 170 VKVYTVG-PEYAHAEARKSPVVD-GVVMRNPDGKEVR--YPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCE-GR 239 (993)
Q Consensus 170 IKVytVG-~~~vhAe~RKSP~vD-G~vrrN~~gke~r--~~v~Lt~eE----k~iA~ka~~afgq-~VcGfDLLRs~-g~ 239 (993)
+.|.++| +.....+.+-..... -.+..+.+.++.. .|..++++. +++|.++++++|. .+++||++... |+
T Consensus 196 ~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~ 275 (315)
T TIGR01205 196 LEVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAPLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGE 275 (315)
T ss_pred EEEEEECCCCccceEEecCCCCCeeCcccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCC
Confidence 9999999 543334433221100 0123343333333 344577654 7899999999998 69999999985 57
Q ss_pred cEEEeccCc
Q 001944 240 SYVCDVNGW 248 (993)
Q Consensus 240 syV~DVNGw 248 (993)
+||+|||.-
T Consensus 276 ~~viEvN~~ 284 (315)
T TIGR01205 276 IYLNEINTI 284 (315)
T ss_pred EEEEEeeCC
Confidence 999999954
No 20
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=99.42 E-value=1.4e-13 Score=140.42 Aligned_cols=145 Identities=22% Similarity=0.331 Sum_probs=88.9
Q ss_pred CCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc
Q 001944 70 VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR 149 (993)
Q Consensus 70 ~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~ 149 (993)
+|+|++..... +..++++-.| . +|+||+.|. .|-|+-++-+.-.|.++.++
T Consensus 12 ~P~T~vs~~~~---------~i~~f~~~~~----~-~VlKPl~g~-----------gG~gV~~i~~~~~n~~~i~e---- 62 (173)
T PF02955_consen 12 IPPTLVSRDKE---------EIRAFIEEHG----D-IVLKPLDGM-----------GGRGVFRISRDDPNLNSILE---- 62 (173)
T ss_dssp S--EEEES-HH---------HHHHHHHHHS----S-EEEEESS-------------TTTT-EEE-TT-TTHHHHHH----
T ss_pred CcCEEEECCHH---------HHHHHHHHCC----C-EEEEECCCC-----------CCcCEEEEcCCCCCHHHHHH----
Confidence 58888875421 1333444343 2 999999997 33344322221112222222
Q ss_pred ccccC--cceEEeeccCC-CCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHh--
Q 001944 150 RVRRE--GSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-- 224 (993)
Q Consensus 150 ~~r~~--gsyIyEEFi~t-~G~DIKVytVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~af-- 224 (993)
..-.+ ..++.|+|+++ ..-|.|+++++++++||..|.+. .|+||.|.+-|+...++.||++|.+||.+++..+
T Consensus 63 ~~~~~~~~~~mvQ~flp~i~~GDkRii~~nG~~~~av~R~P~--~gd~R~N~~~Gg~~~~~~lt~~e~~i~~~i~~~L~~ 140 (173)
T PF02955_consen 63 TLTKNGERPVMVQPFLPEIKEGDKRIILFNGEPSHAVRRIPA--KGDFRSNLAAGGSAEPAELTEREREICEQIGPKLRE 140 (173)
T ss_dssp HHTTTTTS-EEEEE--GGGGG-EEEEEEETTEE-SEEEEE----SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccEEEEeccccccCCCEEEEEECCEEhHHeecCCC--CCCceeeeccCCceeecCCCHHHHHHHHHHHHHHhh
Confidence 22233 45999999998 54599999999999999999986 9999999999999999999999999999999877
Q ss_pred -CCceeEEEEEeeCCCcEEEeccCcc
Q 001944 225 -RQAVCGFDLLRCEGRSYVCDVNGWS 249 (993)
Q Consensus 225 -gq~VcGfDLLRs~g~syV~DVNGwS 249 (993)
|+.++|+|++ +.|+.|||=.|
T Consensus 141 ~Gl~f~GiDvi----g~~l~EiNvts 162 (173)
T PF02955_consen 141 DGLLFVGIDVI----GDKLTEINVTS 162 (173)
T ss_dssp TT--EEEEEEE----TTEEEEEE-SS
T ss_pred cCcEEEEEecc----ccceEEEeccC
Confidence 7889999999 46999999655
No 21
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.40 E-value=6.2e-12 Score=135.97 Aligned_cols=207 Identities=16% Similarity=0.189 Sum_probs=135.8
Q ss_pred CcCEEeecccCCCCh-HHHHHHHhhcCCccc-CCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 001944 15 ICDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 92 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL-~KAi~y~~lr~p~~i-Ndl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 92 (993)
.+|+++...-..|-. -.+.++++..+.+.+ ++..+..+++||..+.++|+ +|||+|++..+...
T Consensus 53 ~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~~~~~~------------- 118 (299)
T PRK14571 53 SFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFVEIKEF------------- 118 (299)
T ss_pred CCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEEEEech-------------
Confidence 467776654322322 245667777775555 56899999999999999998 58999999888431
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 001944 93 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 171 (993)
Q Consensus 93 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DIK 171 (993)
. ....+++|+|+||.+|. .|-|+. ++.|...... -+. ..+....+|+||||+ |+++.
T Consensus 119 ~----~~~~l~~P~vvKP~~g~-----------~s~Gv~----~v~~~~el~~-~~~~~~~~~~~vlVEeyI~--G~E~s 176 (299)
T PRK14571 119 M----KTSPLGYPCVVKPRREG-----------SSIGVF----ICESDEEFQH-ALKEDLPRYGSVIVQEYIP--GREMT 176 (299)
T ss_pred h----hhhhcCCCEEEecCCCC-----------CcCCEE----EECCHHHHHH-HHHHHHhhCCcEEEEcccc--ceEEE
Confidence 0 11235789999999985 223332 2322221111 000 112345799999996 89999
Q ss_pred EEEECCc---eeEEEeeeCCCCCC--eeeecCCCCceee--eeeCCHHH----HHHHHHHHHHhCC-ceeEEEEEeeCCC
Q 001944 172 VYTVGPE---YAHAEARKSPVVDG--VVMRNPDGKEVRY--PVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGR 239 (993)
Q Consensus 172 VytVG~~---~vhAe~RKSP~vDG--~vrrN~~gke~r~--~v~Lt~eE----k~iA~ka~~afgq-~VcGfDLLRs~g~ 239 (993)
|-++|.. .+.+....-|. ++ .+..+.++++..+ |..|+++. +++|.++++++|. .+|+||++..+|+
T Consensus 177 v~vl~~~~~~~vl~~~e~~~~-~~~~~~~~k~~~g~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~~~~ 255 (299)
T PRK14571 177 VSILETEKGFEVLPILELRPK-RRFYDYVAKYTKGETEFILPAPLNPEEERLVKETALKAFVEAGCRGFGRVDGIFSDGR 255 (299)
T ss_pred EEEEcCCCCeeeeceEEEecC-CCccccccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEECCc
Confidence 9999853 35555443331 22 1334444444443 55687764 5689999999995 8999999988889
Q ss_pred cEEEeccCccccccccccH
Q 001944 240 SYVCDVNGWSFVKNSYKYY 258 (993)
Q Consensus 240 syV~DVNGwSFVK~n~kYY 258 (993)
+||+|||.-+-......+.
T Consensus 256 ~~viEiN~~Pg~~~~s~~~ 274 (299)
T PRK14571 256 FYFLEINTVPGLTELSDLP 274 (299)
T ss_pred EEEEEeeCCCCCCccCHHH
Confidence 9999999887665543333
No 22
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.38 E-value=4.9e-12 Score=137.33 Aligned_cols=197 Identities=15% Similarity=0.159 Sum_probs=126.6
Q ss_pred cCE-EeecccCCCChHHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 16 CDC-LIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 16 cD~-LIsF~S~GFPL~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
.|+ ++++|...--.-...+.+++.+ ||+-++..+..++.||..+.++|+++|||||++.++... . .
T Consensus 57 ~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~~~~~-----------~-~ 124 (296)
T PRK14569 57 PDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDK-----------L-V 124 (296)
T ss_pred CCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEEEchh-----------h-h
Confidence 453 3455432222335666777777 667788999999999999999999999999999887531 0 0
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 001944 94 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 173 (993)
Q Consensus 94 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVy 173 (993)
. -..++.|+|+||.+|. .|-|+ .++.|...... -+......+.+|+||||+ |+++.|.
T Consensus 125 ~----~~~~~~P~vVKP~~gg-----------ss~Gv----~~v~~~~eL~~-a~~~~~~~~~~lvEefI~--G~E~tv~ 182 (296)
T PRK14569 125 A----EDEISFPVAVKPSSGG-----------SSIAT----FKVKSIQELKH-AYEEASKYGEVMIEQWVT--GKEITVA 182 (296)
T ss_pred h----HhhcCCCEEEEeCCCC-----------CCcCe----EEcCCHHHHHH-HHHHHHhcCCEEEEcccc--cEEEEEE
Confidence 1 1345789999999874 22222 12222221111 000111234689999995 8999999
Q ss_pred EECCceeEEEeeeCCCCCCeeee-cCCCCceee--eeeCC----HHHHHHHHHHHHHhCC-ceeEEEEEee-CCCcEEEe
Q 001944 174 TVGPEYAHAEARKSPVVDGVVMR-NPDGKEVRY--PVLLT----PNEKQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCD 244 (993)
Q Consensus 174 tVG~~~vhAe~RKSP~vDG~vrr-N~~gke~r~--~v~Lt----~eEk~iA~ka~~afgq-~VcGfDLLRs-~g~syV~D 244 (993)
++|+....+..+.++ .+.+.. +.+.+...+ |..++ .+-+++|.++++++|. .+|+||+.-. +|.+||+|
T Consensus 183 vl~~~~~~~~~i~~~--~~~~~~~~k~~~~~~~~~P~~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlE 260 (296)
T PRK14569 183 IVNDEVYSSVWIEPQ--NEFYDYESKYSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIME 260 (296)
T ss_pred EECCcCcceEEEecC--CCcCChhhccCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEE
Confidence 999876555544332 222211 222233333 44444 3567789999999995 6999999886 56799999
Q ss_pred ccCc
Q 001944 245 VNGW 248 (993)
Q Consensus 245 VNGw 248 (993)
||.-
T Consensus 261 IN~~ 264 (296)
T PRK14569 261 INSS 264 (296)
T ss_pred eeCC
Confidence 9944
No 23
>PRK06849 hypothetical protein; Provisional
Probab=99.35 E-value=7.8e-12 Score=139.81 Aligned_cols=194 Identities=16% Similarity=0.239 Sum_probs=131.0
Q ss_pred cCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 001944 16 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 95 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 95 (993)
+|.+|+-.+.-+.+.++.+.++.+-.+..++.+....++||...++.++++|||+|+|..+... ++..
T Consensus 77 id~vIP~~e~~~~~a~~~~~l~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~------------~~l~ 144 (389)
T PRK06849 77 IDLLIPTCEEVFYLSHAKEELSAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITDP------------EAIR 144 (389)
T ss_pred CCEEEECChHHHhHHhhhhhhcCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCCH------------HHHH
Confidence 6999998877666655555444444567899999999999999999999999999999998651 1111
Q ss_pred eecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEE
Q 001944 96 EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV 175 (993)
Q Consensus 96 ~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVytV 175 (993)
.+.-...++|+|+||+.|. .|.|+.+ +.+. ..+. .+ ....+..+|+||||+-....+-+++.
T Consensus 145 ~~~~~~~~~P~vlKP~~~~-----------~~~~v~~----~~~~-~~l~-~~-~~~~~~~~ivQe~I~G~e~~~~~~~~ 206 (389)
T PRK06849 145 NFMFKTPHTPYVLKPIYSR-----------FVRRVDL----LPKE-AALK-EL-PISKDNPWVMQEFIQGKEYCSYSIVR 206 (389)
T ss_pred HHhhcCCCCcEEEEeCccc-----------CCCeEEE----ecCH-HHhc-cc-ccCCCCCeEEEEEecCCeEEEEEEEE
Confidence 1111112589999999986 3334321 2221 1111 00 11234569999999965556777888
Q ss_pred CCceeEEEeeeCCCCCCeeeecCCCC-ceeeeeeCCHHHHHHHHHHHHHhCCc-eeEEEEEee-CCCcEEEecc
Q 001944 176 GPEYAHAEARKSPVVDGVVMRNPDGK-EVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRC-EGRSYVCDVN 246 (993)
Q Consensus 176 G~~~vhAe~RKSP~vDG~vrrN~~gk-e~r~~v~Lt~eEk~iA~ka~~afgq~-VcGfDLLRs-~g~syV~DVN 246 (993)
++++++...... .... .++ .+.+.....++-.++|.++++++|.. +++||++.. +|+.||+|||
T Consensus 207 ~G~v~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiN 273 (389)
T PRK06849 207 SGELRAHSCYKP-----EYCA--GSGAQIAFQPINHPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECN 273 (389)
T ss_pred CCEEEEEEEeec-----cccC--CCCceeEeEECCcHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEec
Confidence 888765444321 1111 111 12222234678899999999999977 999999998 6779999999
No 24
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.29 E-value=2.4e-11 Score=131.54 Aligned_cols=193 Identities=23% Similarity=0.306 Sum_probs=125.1
Q ss_pred cCEEeecccCCCCh-HHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 16 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 16 cD~LIsF~S~GFPL-~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
+|.+|+.+-...++ .+..+.++..+ +++.|+.+...++.||....++|.++|||+|++..+... ++
T Consensus 70 id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------------~~ 137 (326)
T PRK12767 70 IDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESL------------ED 137 (326)
T ss_pred CCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEcccCH------------HH
Confidence 57888754322222 12222233333 467899999999999999999999999999999887541 11
Q ss_pred eee-ecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 001944 94 FVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 172 (993)
Q Consensus 94 ~i~-v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKV 172 (993)
... ..-..++.|+|+||.+|. .|.|+. ++.|.. ++.. .++....+|.||||.-..-.|-+
T Consensus 138 ~~~~~~~~~~~~P~viKP~~g~-----------~s~gv~----~v~~~~-el~~---~~~~~~~~lvqeyi~G~e~~v~~ 198 (326)
T PRK12767 138 FKAALAKGELQFPLFVKPRDGS-----------ASIGVF----KVNDKE-ELEF---LLEYVPNLIIQEFIEGQEYTVDV 198 (326)
T ss_pred HHhhhhcccCCCCEEEEeCCCC-----------CccCeE----EeCCHH-HHHH---HHHhCCCeEEEeccCCceEEEEE
Confidence 111 011235689999999886 233331 122211 1110 12233489999999444455666
Q ss_pred EEE-CCceeEEEeeeC-CCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCC-ceeEEEEEeeCCCcEEEeccC
Q 001944 173 YTV-GPEYAHAEARKS-PVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVNG 247 (993)
Q Consensus 173 ytV-G~~~vhAe~RKS-P~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~afgq-~VcGfDLLRs~g~syV~DVNG 247 (993)
|+. ++++++...++. ....| ......+...++-+++|.++++++|. .+++||++...|++||+|||.
T Consensus 199 ~~~~~G~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~g~~~viEiNp 268 (326)
T PRK12767 199 LCDLNGEVISIVPRKRIEVRAG--------ETSKGVTVKDPELFKLAERLAEALGARGPLNIQCFVTDGEPYLFEINP 268 (326)
T ss_pred EEcCCCCEEEEEEeeeeeecCC--------ceeEEEEcCCHHHHHHHHHHHHhcCCeeeEEEEEEEECCeEEEEEEeC
Confidence 666 677777666653 11111 11222334568889999999999999 599999999999999999995
No 25
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.29 E-value=2.5e-11 Score=134.47 Aligned_cols=197 Identities=17% Similarity=0.234 Sum_probs=124.5
Q ss_pred cCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHH-HhCCCCCCCEEEEeccCCCccccccccccce
Q 001944 16 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEEDF 94 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL-~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 94 (993)
||.+++-+. ..+.+ +++.++..+.++.++.+...+++||....+.| +++|||+|++..+... ++.
T Consensus 63 id~v~~~~e-~v~~~-~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~~~~~------------~~~ 128 (380)
T TIGR01142 63 PDYIVPEIE-AIATD-ALFELEKEGYFVVPNARATKLTMNREGIRRLAAEELGLPTSRYMFADSL------------DEL 128 (380)
T ss_pred CCEEEeccC-ccCHH-HHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceEeCCH------------HHH
Confidence 788776443 35544 45666766666788999999999999999975 8999999999988651 121
Q ss_pred eeecCeeccCcEEEeeccccC-cceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 001944 95 VEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 173 (993)
Q Consensus 95 i~v~g~~~~kPfVeKpv~Ged-Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVy 173 (993)
... ...+++|+|+||++|.+ -++++..... -..+.++..-. . ....++.+|+||||+ .+..+-|.
T Consensus 129 ~~~-~~~~g~P~VvKP~~g~~s~gv~~v~~~~---el~~~~~~~~~----~-----~~~~~~~~ivEe~i~-~~~E~sv~ 194 (380)
T TIGR01142 129 REA-VEKIGYPCVVKPVMSSSGKGQSVVRGPE---DIEKAWEYAQE----G-----ARGGAGRVIVEEFID-FDYEITLL 194 (380)
T ss_pred HHH-HHHcCCCEEEEECCCcCCCCeEEECCHH---HHHHHHHHHHh----h-----ccCCCCCEEEEEecC-CCEEEEEE
Confidence 111 12456899999999861 1112111111 01111111100 0 001245799999996 35788887
Q ss_pred EE---CCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHH----HHHHHHHHHHhCC-ceeEEEEEeeCCCcEEEec
Q 001944 174 TV---GPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDV 245 (993)
Q Consensus 174 tV---G~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eE----k~iA~ka~~afgq-~VcGfDLLRs~g~syV~DV 245 (993)
++ +++.+.. .| .+.+..+..-.+...|..|+++. +++|.++++++|. .++++|++-+++++||+||
T Consensus 195 ~~~~~~g~~~~~----~~--~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~~~~viEi 268 (380)
T TIGR01142 195 TVRHVDGNTTFC----AP--IGHRQIDGDYHESWQPQEMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGDEVIFSEV 268 (380)
T ss_pred EEEcCCCCEEEe----cC--cceEEeCCeeEEEECCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCcEEEEEe
Confidence 76 3332221 12 12222222212334567788764 5788999999997 7889999999889999999
Q ss_pred c
Q 001944 246 N 246 (993)
Q Consensus 246 N 246 (993)
|
T Consensus 269 n 269 (380)
T TIGR01142 269 S 269 (380)
T ss_pred e
Confidence 9
No 26
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=99.26 E-value=1e-12 Score=154.06 Aligned_cols=85 Identities=38% Similarity=0.662 Sum_probs=77.2
Q ss_pred cccccccccCcccCCCCCCccceeeEEEeecchhHHHHHHHHHhcCCcccccccchhhhhhhhhhhcCCCCCcccccceE
Q 001944 795 DDKETQYRLDPKYANVKTPERHVRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVL 874 (993)
Q Consensus 795 ~~~E~~~RL~p~ya~V~SP~RhVRtrlYFTsESHIhsLLNvlr~~~l~~~~~~e~~~i~~~a~~~l~~i~ELdYlSqIvf 874 (993)
..+|+.++|+|.| .||.||||||||||+|||+|||+ ++||| + +.+.||||++|+++
T Consensus 780 ~~~et~~~~~p~~---~sp~~~~r~~lY~~sk~~v~sl~-~~ryG-~-------------------~~~~~ln~~~~t~~ 835 (1018)
T KOG1057|consen 780 ESAETKNRLNPVY---LSPRRHVRTRLYFTSKSHVHSLL-LRRYG-I-------------------SDVEKLNDGLLTSI 835 (1018)
T ss_pred cchhhhcccCccc---cChhHHHHHHHhhhhHhhhhhhh-hhhcC-C-------------------chhhhhcccchhce
Confidence 3568999999999 59999999999999999999999 99999 2 34689999999999
Q ss_pred EEEecCCCCCCCCCeeEEEEEecCCCCCC
Q 001944 875 RMFENTAVALEDPKRFRIELTFSRGADLS 903 (993)
Q Consensus 875 ~lYE~~~~~~~~~~rf~Iei~~SpG~~~~ 903 (993)
||||....++.+.++||+|++|+.-.|.+
T Consensus 836 ~L~~~~~~d~~~e~~~~~rlyFtreshi~ 864 (1018)
T KOG1057|consen 836 RLYEQILNDPTSERHFHTRLYFTRESHIY 864 (1018)
T ss_pred eechhhccCCcccccceeEEEeccchhhh
Confidence 99999999999999999999999877643
No 27
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.25 E-value=1.1e-10 Score=129.66 Aligned_cols=189 Identities=13% Similarity=0.149 Sum_probs=122.0
Q ss_pred HHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEee
Q 001944 32 AESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKP 110 (993)
Q Consensus 32 Ai~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKp 110 (993)
..++++..+ ||+-++..+..+++||..+.++|+++|||+|++..+.+..- ....++.+.. -..++.|+|+||
T Consensus 106 iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~------~~~~~~~~~~-~~~l~~PvvVKP 178 (347)
T PRK14572 106 IQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELEKLKY------LNSPRKTLLK-LESLGFPQFLKP 178 (347)
T ss_pred HHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEEcccc------ccChHHHHHH-HHhcCCCEEEec
Confidence 555667666 56667889999999999999999999999999999865210 0001111111 123578999999
Q ss_pred cccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECC----ce---eE-
Q 001944 111 VHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGP----EY---AH- 181 (993)
Q Consensus 111 v~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~----~~---vh- 181 (993)
++|. ..+|++..... .|-+.+.. ....+..+|+||||+ |+++.|-++|. +. +.
T Consensus 179 ~~ggsS~GV~~v~~~~------el~~a~~~----------~~~~~~~vlVEefI~--G~E~sv~vi~~~~~g~~~~~~l~ 240 (347)
T PRK14572 179 VEGGSSVSTYKITNAE------QLMTLLAL----------IFESDSKVMSQSFLS--GTEVSCGVLERYRGGKRNPIALP 240 (347)
T ss_pred CCCCCCCCEEEECCHH------HHHHHHHH----------HHhcCCCEEEEcCcc--cEEEEEEEEeCccCCCCCceecc
Confidence 9974 33443332211 12221110 012355789999995 89999999973 21 11
Q ss_pred -EEeeeCCCCCCe---eeecCCCCce--eeeeeCCHH----HHHHHHHHHHHhCCc-eeEEEEEeeCCCcEEEeccCcc
Q 001944 182 -AEARKSPVVDGV---VMRNPDGKEV--RYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNGWS 249 (993)
Q Consensus 182 -Ae~RKSP~vDG~---vrrN~~gke~--r~~v~Lt~e----Ek~iA~ka~~afgq~-VcGfDLLRs~g~syV~DVNGwS 249 (993)
.|-+ | .|. ++...+.++. ..|..|+++ -+++|.++++++|.. ++++|++-+.|++||+|||.-+
T Consensus 241 ~~ei~--~--~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~~~~vlEiNt~P 315 (347)
T PRK14572 241 ATEIV--P--GGEFFDFESKYKQGGSEEITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFIIVDGEPHILETNTLP 315 (347)
T ss_pred cEEEe--c--CCCccCHHHccCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEECCcEEEEeeeCCC
Confidence 2222 1 222 2233332222 235567765 588999999999965 9999999988889999999543
No 28
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.20 E-value=1.1e-10 Score=128.68 Aligned_cols=206 Identities=18% Similarity=0.240 Sum_probs=127.8
Q ss_pred CcCEEeecccCCCChH-HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 001944 15 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 92 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~-KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 92 (993)
.+|+.+.-.--.+..+ ...++++..+ ||+=++..+..++.||..+.++|+++|||+|++..+.... . ..
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~~~~~~---~------~~ 151 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLTRGD---W------EE 151 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEeccc---c------ch
Confidence 4687766543223333 4556777777 5666788999999999999999999999999999986621 0 00
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 001944 93 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 171 (993)
Q Consensus 93 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DIK 171 (993)
..+..-...++.|+|+||.+|. .+-|+. ++.+... +..-+. ..+.+..+|+|+||+ |+++.
T Consensus 152 ~~~~~~~~~~~~P~vVKP~~~g-----------sS~Gv~----~v~~~~e-l~~a~~~~~~~~~~vlvEefI~--G~E~~ 213 (333)
T PRK01966 152 ASLAEIEAKLGLPVFVKPANLG-----------SSVGIS----KVKNEEE-LAAALDLAFEYDRKVLVEQGIK--GREIE 213 (333)
T ss_pred hhHHHHHHhcCCCEEEEeCCCC-----------CccCEE----EECCHHH-HHHHHHHHHhcCCcEEEEcCcC--CEEEE
Confidence 0011011245789999999974 222332 1221111 110000 123457899999998 89999
Q ss_pred EEEECCc-eeEEEeeeCCCCCCeee--ecC-CC-CceeeeeeCCHH----HHHHHHHHHHHhCC-ceeEEEEEeeC-CCc
Q 001944 172 VYTVGPE-YAHAEARKSPVVDGVVM--RNP-DG-KEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLRCE-GRS 240 (993)
Q Consensus 172 VytVG~~-~vhAe~RKSP~vDG~vr--rN~-~g-ke~r~~v~Lt~e----Ek~iA~ka~~afgq-~VcGfDLLRs~-g~s 240 (993)
|-++|.+ .+......-+. ++-+. ..- .| .+...|..|+++ -+++|.++++++|. .+|.+|++-.. |++
T Consensus 214 v~vl~~~~~~~~~~ei~~~-~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~ 292 (333)
T PRK01966 214 CAVLGNDPKASVPGEIVKP-DDFYDYEAKYLDGSAELIIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEI 292 (333)
T ss_pred EEEECCCCeEcccEEEecC-CceEcHHHccCCCCceEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCE
Confidence 9999952 11111111110 11111 111 12 233456677765 46899999999996 79999999874 568
Q ss_pred EEEeccCc
Q 001944 241 YVCDVNGW 248 (993)
Q Consensus 241 yV~DVNGw 248 (993)
||+|||--
T Consensus 293 ~vlEiNt~ 300 (333)
T PRK01966 293 YLNEINTM 300 (333)
T ss_pred EEEEeeCC
Confidence 99999944
No 29
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.19 E-value=2.8e-10 Score=126.12 Aligned_cols=199 Identities=15% Similarity=0.227 Sum_probs=129.9
Q ss_pred CcCEEeecccCCCChH-HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 001944 15 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 92 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~-KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 92 (993)
.+|+++.-.--+|--| ....++++.+ ||+-++..+..+++||..+.++|+++|||+|++.++....
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~~~~~~------------ 157 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWTVTADE------------ 157 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEECCc------------
Confidence 3676655433335555 4667777777 6677899999999999999999999999999999986521
Q ss_pred ceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 001944 93 DFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 171 (993)
Q Consensus 93 d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIK 171 (993)
+ + .-..+++|+|+||++|. -.+|.+.... ..|-..+. ...+.+..+|+||||+ |+.+-
T Consensus 158 ~-~--~~~~l~~P~iVKP~~~gsS~Gv~~v~~~------~eL~~a~~----------~a~~~~~~vlVEe~I~--G~E~s 216 (343)
T PRK14568 158 R-P--DAATLTYPVFVKPARSGSSFGVSKVNSA------DELDYAIE----------SARQYDSKVLIEEAVV--GSEVG 216 (343)
T ss_pred h-h--hhhhcCCCEEEEeCCCCCCCCEEEeCCH------HHHHHHHH----------HHHhcCCcEEEECCcC--CEEEE
Confidence 0 1 11346789999999974 2222222211 11111110 0112356789999996 88999
Q ss_pred EEEECCc---eeEEEeeeCCCCCCeeeec----CC----CCceeeeeeCCHH----HHHHHHHHHHHhCC-ceeEEEEEe
Q 001944 172 VYTVGPE---YAHAEARKSPVVDGVVMRN----PD----GKEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLR 235 (993)
Q Consensus 172 VytVG~~---~vhAe~RKSP~vDG~vrrN----~~----gke~r~~v~Lt~e----Ek~iA~ka~~afgq-~VcGfDLLR 235 (993)
|-++|.. .+....+..+ ..|.++.. .. ......|..|+++ -+++|.++++++|. .+|.||++-
T Consensus 217 v~vl~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l 295 (343)
T PRK14568 217 CAVLGNGADLVVGEVDQIRL-SHGFFRIHQENEPEKGSENSTIIVPADISAEERSRVQETAKAIYRALGCRGLARVDMFL 295 (343)
T ss_pred EEEEcCCCCcceecceEEec-CCCccchhhhhccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 9888753 2222233332 12333211 11 1123456778765 46899999999999 799999998
Q ss_pred e-CCCcEEEeccC
Q 001944 236 C-EGRSYVCDVNG 247 (993)
Q Consensus 236 s-~g~syV~DVNG 247 (993)
. +|.+||+|||-
T Consensus 296 ~~~g~~~llEINt 308 (343)
T PRK14568 296 QEDGTVVLNEVNT 308 (343)
T ss_pred eCCCCEEEEEeeC
Confidence 7 56688999994
No 30
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=99.17 E-value=3.3e-10 Score=118.50 Aligned_cols=49 Identities=43% Similarity=0.512 Sum_probs=39.2
Q ss_pred hhHHHhhc--cCCCCcchhhhhhcccccceEeecCCchHHHHHHHHHHhhccCCC
Q 001944 454 NEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 506 (993)
Q Consensus 454 e~LG~~fR--Yp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~leg 506 (993)
.++|+.+| |+. ++.+......++.|+||+..||+.||++|+.||+.-.+
T Consensus 28 ~~~G~~lr~~y~~----~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~~~gl~~~~~ 78 (242)
T cd07061 28 FELGRYFRQRYGE----LLLLHSYNRSDLYIRSSDSQRTLQSAQAFLAGLFPPDG 78 (242)
T ss_pred HHHHHHHHHHHHH----hcccccCCCCeeEEEECCCcHHHHHHHHHHHhcCCCcc
Confidence 45888888 753 32224556789999999999999999999999998664
No 31
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.14 E-value=5.2e-10 Score=123.73 Aligned_cols=192 Identities=19% Similarity=0.273 Sum_probs=120.4
Q ss_pred cCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 001944 16 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 95 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 95 (993)
||++ +|=....|. .++++++..+..+.++.++..+++||....+.|+++|||+|++..+... ++..
T Consensus 61 ~dvi-t~e~e~i~~-~~l~~l~~~g~~~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~~~ 126 (352)
T TIGR01161 61 CDVI-TFEFEHVDV-EALEKLEARGVKLFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDE------------EELD 126 (352)
T ss_pred CCEE-EeCcCcCCH-HHHHHHHhCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCH------------HHHH
Confidence 6754 554455565 4566777665667799999999999999999999999999999998652 1111
Q ss_pred eecCeeccCcEEEeecccc--CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 001944 96 EVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 173 (993)
Q Consensus 96 ~v~g~~~~kPfVeKpv~Ge--dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVy 173 (993)
.. -..+++|+|+||..|. -.++++...... ....++ .. .+..+|+||||+- |..+-|.
T Consensus 127 ~~-~~~~g~P~vvKp~~~g~~g~Gv~~v~~~~e---l~~a~~--------------~~-~~~~~lvEe~I~~-~~E~sv~ 186 (352)
T TIGR01161 127 AA-LQELGFPVVLKARTGGYDGRGQYRIRNEAD---LPQAAK--------------EL-GDRECIVEEFVPF-ERELSVI 186 (352)
T ss_pred HH-HHHcCCCEEEEeCCCCCCCCCEEEECCHHH---HHHHHH--------------hc-CCCcEEEEecCCC-CeEEEEE
Confidence 11 1234689999999863 122222221110 111111 11 2347999999973 6777776
Q ss_pred EEC---CceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEeeCCC-cEEEe
Q 001944 174 TVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGR-SYVCD 244 (993)
Q Consensus 174 tVG---~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs~g~-syV~D 244 (993)
++. +++.. -|+... ..++-.......|..+++ +-+++|.++++++|. .++++|++.+.++ +||+|
T Consensus 187 ~~~~~~G~~~~-----~~~~~~-~~~~g~~~~~~~p~~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~E 260 (352)
T TIGR01161 187 VARSADGETAF-----YPVVEN-IHQDGILRYVVAPAAVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINE 260 (352)
T ss_pred EEEcCCCCEEE-----ECCccc-EEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEE
Confidence 652 23221 232221 222111111223555654 357889999999998 4999999998555 99999
Q ss_pred ccC
Q 001944 245 VNG 247 (993)
Q Consensus 245 VNG 247 (993)
||-
T Consensus 261 inp 263 (352)
T TIGR01161 261 LAP 263 (352)
T ss_pred ecC
Confidence 994
No 32
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.12 E-value=2.4e-10 Score=128.61 Aligned_cols=195 Identities=16% Similarity=0.184 Sum_probs=123.5
Q ss_pred CCChH-HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeecc
Q 001944 26 GYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFW 103 (993)
Q Consensus 26 GFPL~-KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~ 103 (993)
..||- ....+++..+ |+.-.+..+-.+++||..+.++|+++|||+|++..+.. .++..... ..++
T Consensus 36 E~~l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~~------------~~ea~~~~-~~~g 102 (379)
T PRK13790 36 EQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVER------------KKDALTYI-ENCE 102 (379)
T ss_pred cHHHHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEECC------------HHHHHHHH-HhcC
Confidence 34654 3455677777 44447778889999999999999999999999887754 11222211 1356
Q ss_pred CcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeE-
Q 001944 104 KPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAH- 181 (993)
Q Consensus 104 kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vh- 181 (993)
.|+|+||..|. -.++++...... ....++.+- ....++.+|+||||.-.--.|-+++-|..++.
T Consensus 103 ~PvVvKp~~~~~gkGV~iv~~~~e---l~~a~~~~~-----------~~~~~~~vlvEe~i~G~E~sv~~~~~g~~~~~~ 168 (379)
T PRK13790 103 LPVVVKKDGLAAGKGVIIADTIEA---ARSAIEIMY-----------GDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPF 168 (379)
T ss_pred CCEEEEeCCCCCCCCEEEECCHHH---HHHHHHHHH-----------hcCCCCeEEEEEcccCceEEEEEEeeCCEEEec
Confidence 89999999874 233333322111 111122110 01224679999999766678888887765432
Q ss_pred -EEeeeCC-CCCCeeeecCCCCceeeee-eCCHHH-----HHHHHHHHHHh---CCceeE---EEEEeeCCCcEEEeccC
Q 001944 182 -AEARKSP-VVDGVVMRNPDGKEVRYPV-LLTPNE-----KQMAREVCIAF---RQAVCG---FDLLRCEGRSYVCDVNG 247 (993)
Q Consensus 182 -Ae~RKSP-~vDG~vrrN~~gke~r~~v-~Lt~eE-----k~iA~ka~~af---gq~VcG---fDLLRs~g~syV~DVNG 247 (993)
+..++.. ..+|+..-|+.|-+.-.|+ .++++. ++||.++++++ |..++| +|++-+.+++||+|||.
T Consensus 169 ~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g~~viEiN~ 248 (379)
T PRK13790 169 DCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNA 248 (379)
T ss_pred ccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCeEEEEEEc
Confidence 2232221 2366666666433333344 457654 68899999998 545555 59988888899999996
No 33
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.11 E-value=6.6e-10 Score=124.93 Aligned_cols=207 Identities=13% Similarity=0.162 Sum_probs=127.7
Q ss_pred cCEEeecccCCCChH-HHHHHHhhcCCcccCCc-chhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 16 CDCLIAFYSSGYPLE-KAESYATLRKPFLVNEL-EPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 16 cD~LIsF~S~GFPL~-KAi~y~~lr~p~~iNdl-~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
+|+.+...--.+--| ....++++.+.+.++.- .+..+++||..+.++|+++|||||++..+.+... ....++
T Consensus 88 ~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~------~~~~~~ 161 (364)
T PRK14570 88 IDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDY------FLDKEG 161 (364)
T ss_pred CCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEecccc------ccchHH
Confidence 675544432223334 67889999997666665 6999999999999999999999999888765210 001111
Q ss_pred eeeecCeeccCcEEEeeccc-cCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 001944 94 FVEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 172 (993)
Q Consensus 94 ~i~v~g~~~~kPfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKV 172 (993)
...-....++.|+|+||+.+ +..+|.+-.... .|-+.+. ...+.+..+|+||||. |++|.|
T Consensus 162 ~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~------el~~al~----------~a~~~~~~vlVEefI~--GrEi~v 223 (364)
T PRK14570 162 IKKDIKEVLGYPVIVKPAVLGSSIGINVAYNEN------QIEKCIE----------EAFKYDLTVVIEKFIE--AREIEC 223 (364)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHH------HHHHHHH----------HHHhCCCCEEEECCcC--CEEEEE
Confidence 11111124678999999985 333333221111 1111111 0122355689999997 999999
Q ss_pred EEECCceeEE---EeeeCCCCCCeee---e--cCC-CCcee--eeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEee
Q 001944 173 YTVGPEYAHA---EARKSPVVDGVVM---R--NPD-GKEVR--YPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRC 236 (993)
Q Consensus 173 ytVG~~~vhA---e~RKSP~vDG~vr---r--N~~-gke~r--~~v~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs 236 (993)
-++|+....+ ...... ++.|- . ..+ |+... -|..|++ +-+++|.+|++++|. .+|.||++-+
T Consensus 224 ~Vlg~~~~~v~~~~Ei~~~--~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~ 301 (364)
T PRK14570 224 SVIGNEQIKIFTPGEIVVQ--DFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARIDFLIE 301 (364)
T ss_pred EEECCCCceEeeeEEEEeC--CCCccCHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEE
Confidence 9999753221 111100 11111 1 111 23222 2555664 678899999999999 6999999887
Q ss_pred --CCCcEEEeccCc
Q 001944 237 --EGRSYVCDVNGW 248 (993)
Q Consensus 237 --~g~syV~DVNGw 248 (993)
+|.+||+|||--
T Consensus 302 ~~~g~~yvlEiNt~ 315 (364)
T PRK14570 302 KDTGLIYLNEINTI 315 (364)
T ss_pred CCCCcEEEEEeeCC
Confidence 367999999944
No 34
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.10 E-value=4.5e-10 Score=110.45 Aligned_cols=166 Identities=22% Similarity=0.310 Sum_probs=95.0
Q ss_pred hhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChH
Q 001944 52 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGM 130 (993)
Q Consensus 52 ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~ 130 (993)
++.||....+++.+.|||+|++..+.... +..+.+. .++.|+|+||..|. --+|++.-.... .
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~~~~~~---------~~~~~~~----~~~~p~vvKp~~g~gs~gv~~~~~~~~---l 64 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRIVDSEE---------ELRAFAE----DLGFPFVVKPVDGSGSRGVFIVHSPEE---L 64 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEEECSHH---------HHHHHHH----HSSSSEEEEESS-STTTT-EEESSHHH---H
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHH----HcCCCEEEEcCccccCCCEEEeCCHHH---H
Confidence 47899999999999999999999986621 0111221 22379999999996 112222111110 1
Q ss_pred HHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCC---Cceeeee
Q 001944 131 KELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDG---KEVRYPV 207 (993)
Q Consensus 131 ~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~vDG~vrrN~~g---ke~r~~v 207 (993)
...++.+...+ ....+.||+||||+...-.+.+++.+++.+.+...+.- .....+. ....+..
T Consensus 65 ~~~~~~~~~~~---------~~~~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 130 (184)
T PF13535_consen 65 EAALAEIREDS---------PLGNGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRYV-----RQSPGHFSGGVPTGYSV 130 (184)
T ss_dssp HHHHHHHHHHH---------S-HSSSEEEEE---SEEEEEEEEEETTEEEEEEEEEEE-----EEETCCCSSSEEEEEEE
T ss_pred HHHHHHHHHhc---------ccCCccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEEe-----cccccccccceeeeeec
Confidence 11222121000 01367899999999655777778888887555544331 1112221 2333333
Q ss_pred eC----CHHHHHHHHHHHHHhCC--ceeEEEEEeeCCC-cEEEeccC
Q 001944 208 LL----TPNEKQMAREVCIAFRQ--AVCGFDLLRCEGR-SYVCDVNG 247 (993)
Q Consensus 208 ~L----t~eEk~iA~ka~~afgq--~VcGfDLLRs~g~-syV~DVNG 247 (993)
.. .++-++.+.++++++|. .++++|++...++ .|++|||.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~g~~~~iEiN~ 177 (184)
T PF13535_consen 131 PSEPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPDGELYFIEINP 177 (184)
T ss_dssp S--CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETCCEEEEEEEES
T ss_pred ccccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCCCCEEEEEECc
Confidence 22 26778899999999997 9999999999877 58999995
No 35
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.08 E-value=5.9e-10 Score=124.28 Aligned_cols=197 Identities=17% Similarity=0.246 Sum_probs=122.2
Q ss_pred cCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHH-hCCCCCCCEEEEeccCCCccccccccccce
Q 001944 16 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLE-KYGIPVPRYALVNREVPYQELDYFIEEEDF 94 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~-~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 94 (993)
||.+|+...+ .+... ++.+...+..+..+.++..+++||....+.|. ++|||+|++..+... ++.
T Consensus 76 id~vi~~~e~-~~~~~-~~~l~~~g~~~~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~------------~~l 141 (395)
T PRK09288 76 PDYIVPEIEA-IATDA-LVELEKEGFNVVPTARATRLTMNREGIRRLAAEELGLPTSPYRFADSL------------EEL 141 (395)
T ss_pred CCEEEEeeCc-CCHHH-HHHHHhcCCeeCCCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCH------------HHH
Confidence 7888876554 45543 44555556556688999999999999999985 789999999988651 222
Q ss_pred eeecCeeccCcEEEeeccccC-cceeEEeccCCCChHHHHHhhcCCCcccccccccccc-cCcceEEeeccCCCCceeEE
Q 001944 95 VEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKV 172 (993)
Q Consensus 95 i~v~g~~~~kPfVeKpv~Ged-Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyEEFi~t~G~DIKV 172 (993)
.+.. ..+++|+|+||+.|.+ .++++...... ..+.++.+-. .-| ..+.+|+||||+ .|..+-|
T Consensus 142 ~~~~-~~~g~P~VvKP~~g~~s~Gv~~v~~~~e---l~~~~~~~~~----------~~~~~~~~~lvEefi~-~~~E~sv 206 (395)
T PRK09288 142 RAAV-EEIGYPCVVKPVMSSSGKGQSVVRSPED---IEKAWEYAQE----------GGRGGAGRVIVEEFID-FDYEITL 206 (395)
T ss_pred HHHH-HhcCCCEEEEeCCCcCCCCeEEECCHHH---HHHHHHHHHh----------hccccCCCEEEEEecC-CCEEEEE
Confidence 2211 2356899999998851 22332222111 1122221100 001 136799999997 3667777
Q ss_pred EEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHH----HHHHHHHHHhCC-ceeEEEEEeeCCCcEEEe
Q 001944 173 YTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQ-AVCGFDLLRCEGRSYVCD 244 (993)
Q Consensus 173 ytVG~---~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk----~iA~ka~~afgq-~VcGfDLLRs~g~syV~D 244 (993)
.++.. ..... .| . +.++.+-+-.+...|..|+++.. ++|.++++++|. .++.+|++.+++++||+|
T Consensus 207 ~~~~~~~~~~~~~----~~-~-~~~~~~~~~~~~~~p~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~~~~viE 280 (395)
T PRK09288 207 LTVRAVDGGTHFC----AP-I-GHRQEDGDYRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGDEVYFSE 280 (395)
T ss_pred EEEEcCCCCEEEe----cC-c-ccEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCeEEEEE
Confidence 76632 22222 12 1 22222211122334677777544 589999999984 567799999888999999
Q ss_pred ccC
Q 001944 245 VNG 247 (993)
Q Consensus 245 VNG 247 (993)
+|.
T Consensus 281 inp 283 (395)
T PRK09288 281 VSP 283 (395)
T ss_pred ecC
Confidence 993
No 36
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.05 E-value=2.4e-09 Score=119.95 Aligned_cols=196 Identities=19% Similarity=0.249 Sum_probs=123.2
Q ss_pred CcCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 001944 15 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 94 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 94 (993)
.||++ .|-....|. .++++++.. ..+.++.++..+++||...-+.|+++|||+|++..+... ++.
T Consensus 63 ~~dvi-t~e~e~i~~-~~l~~l~~~-~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~------------~~l 127 (372)
T PRK06019 63 QCDVI-TYEFENVPA-EALDALAAR-VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSA------------EDL 127 (372)
T ss_pred cCCEE-EeCcCCCCH-HHHHHHhcC-CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeCCH------------HHH
Confidence 58874 565566776 666777655 557899999999999999999999999999999998651 122
Q ss_pred eeecCeeccCcEEEeeccc-c-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 001944 95 VEVHGNRFWKPFVEKPVHG-D-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 172 (993)
Q Consensus 95 i~v~g~~~~kPfVeKpv~G-e-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKV 172 (993)
... ...++.|+|+||..| . -+++++-..... ....+..+ ..+.+|+||||+- |..+-|
T Consensus 128 ~~~-~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~e---l~~a~~~~---------------~~~~~ivEe~I~~-~~E~sv 187 (372)
T PRK06019 128 EAA-LADLGLPAVLKTRRGGYDGKGQWVIRSAED---LEAAWALL---------------GSVPCILEEFVPF-EREVSV 187 (372)
T ss_pred HHH-HHHcCCcEEEEeCCCCcCCCCeEEECCHHH---HHHHHHhc---------------CCCCEEEEecCCC-CeEEEE
Confidence 111 123568999999984 3 233333322111 11122211 2457999999984 566777
Q ss_pred EEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEeeCCC-cEEEecc
Q 001944 173 YTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGR-SYVCDVN 246 (993)
Q Consensus 173 ytVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs~g~-syV~DVN 246 (993)
.+++.. .-+.+--|+.. .+.+|---.....|..+++ +-+++|.++++++|.. +++||++.+.++ +||+|+|
T Consensus 188 ~~~~~~--~G~~~~~p~~e-~~~~~gi~~~~~~pa~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~Ein 264 (372)
T PRK06019 188 IVARGR--DGEVVFYPLVE-NVHRNGILRTSIAPARISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIA 264 (372)
T ss_pred EEEECC--CCCEEEeCCcc-cEEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEec
Confidence 666431 01111223211 1222200011123444554 5678899999999964 888999998555 9999999
Q ss_pred Cc
Q 001944 247 GW 248 (993)
Q Consensus 247 Gw 248 (993)
--
T Consensus 265 pR 266 (372)
T PRK06019 265 PR 266 (372)
T ss_pred CC
Confidence 53
No 37
>PRK07206 hypothetical protein; Provisional
Probab=99.01 E-value=4.3e-09 Score=118.35 Aligned_cols=207 Identities=14% Similarity=0.177 Sum_probs=122.6
Q ss_pred cCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 001944 16 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 95 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 95 (993)
.|.+|++.-.+.++ |-.-.+...+...|+...-..++||.+..+.|.++|||+|++..+.... +....+
T Consensus 71 ~d~vi~~~e~~~~~--~a~l~~~l~l~~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~~~~---------e~~~~~ 139 (416)
T PRK07206 71 PEAIIAGAESGVEL--ADRLAEILTPQYSNDPALSSARRNKAEMINALAEAGLPAARQINTADWE---------EAEAWL 139 (416)
T ss_pred CCEEEECCCccHHH--HHHHHHhcCCCcCCChhhHHHhhCHHHHHHHHHHcCCCcccEEecCCHH---------HHHHHH
Confidence 58999864333433 3333444555558999999999999999999999999999999885410 111222
Q ss_pred eecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEE
Q 001944 96 EVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 174 (993)
Q Consensus 96 ~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVyt 174 (993)
.-.| -+..|+|+||++|. -.+|++...... .+..++.+-+..+.+. ..+..+|+||||+-.--.|-+++
T Consensus 140 ~~~g-~~~~P~VvKP~~g~gs~gv~~v~~~~e---l~~~~~~~~~~~~~~~------~~~~~~lvEe~i~G~E~sv~~~~ 209 (416)
T PRK07206 140 RENG-LIDRPVVIKPLESAGSDGVFICPAKGD---WKHAFNAILGKANKLG------LVNETVLVQEYLIGTEYVVNFVS 209 (416)
T ss_pred HhcC-CCCCCEEEeCCCCCCCCCEEEeCCHHH---HHHHHHHHHhccccCC------CCCCeEEEEEccccEEEEEEEEE
Confidence 2111 01349999999974 134444333221 2233333211111110 12467999999975334555666
Q ss_pred ECCceeE-EEee--eCCCCCCeeeecCCCCceeeee--eCCHHHHHHHHHHHHHhCC--ceeEEEEEeeCCCcEEEecc
Q 001944 175 VGPEYAH-AEAR--KSPVVDGVVMRNPDGKEVRYPV--LLTPNEKQMAREVCIAFRQ--AVCGFDLLRCEGRSYVCDVN 246 (993)
Q Consensus 175 VG~~~vh-Ae~R--KSP~vDG~vrrN~~gke~r~~v--~Lt~eEk~iA~ka~~afgq--~VcGfDLLRs~g~syV~DVN 246 (993)
.+++... +..+ +.+.-+|.+... ... ..|. ...++-+++|.++++++|. .++.+|+..+.++++|+|||
T Consensus 210 ~~G~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g~~liEin 285 (416)
T PRK07206 210 LDGNHLVTEIVRYHKTSLNSGSTVYD--YDE-FLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADGPRLIEIG 285 (416)
T ss_pred ECCEEEEEEeEEeeecccCCCCceec--ccc-cCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCCCEEEEEC
Confidence 6677443 2232 222222221111 000 0111 1223455678999999998 57899999998999999999
No 38
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=99.00 E-value=3.1e-09 Score=117.41 Aligned_cols=217 Identities=24% Similarity=0.402 Sum_probs=130.0
Q ss_pred cCEEeecccCCCChHHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhC-------CCCCCCEEEEeccCCCccccc
Q 001944 16 CDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKY-------GIPVPRYALVNREVPYQELDY 87 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~-------gIP~P~t~~~~r~~p~~~~~~ 87 (993)
-||+|==.++.==...-.+|.+.+- ..+|..++++..+.||...|++|++. +|.+|+.+++..+. . +
T Consensus 53 fDvIlHKltd~~~~~~l~~y~~~hP~v~viDp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~-~-~--- 127 (307)
T PF05770_consen 53 FDVILHKLTDEDWVQQLEEYIKKHPEVVVIDPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDA-E-S--- 127 (307)
T ss_dssp SCEEEE--CHCHHHHHHHHHHHH-TTSEEET-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSH-C-C---
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHCCCeEEEcCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCH-H-H---
Confidence 4777765555222334567777642 36888999999999999988888774 78999999998641 1 0
Q ss_pred cccccceeeecCeeccCcEEEeeccc----cCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeecc
Q 001944 88 FIEEEDFVEVHGNRFWKPFVEKPVHG----DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFM 163 (993)
Q Consensus 88 ~~e~~d~i~v~g~~~~kPfVeKpv~G----edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi 163 (993)
..+. +.-..+..|+|.||+.+ +-|...|-|... |-.. + ....+.||||
T Consensus 128 ---~~~~--l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~---gL~~-----------L---------~~P~VlQeFV 179 (307)
T PF05770_consen 128 ---LPEL--LKEAGLKFPLICKPLVACGSADSHKMAIVFNEE---GLKD-----------L---------KPPCVLQEFV 179 (307)
T ss_dssp ---HHHH--HHCTTS-SSEEEEESB-SSTSCCCEEEEE-SGG---GGTT----------------------SSEEEEE--
T ss_pred ---HHHH--HHHCCCcccEEeeehhhcCCccceEEEEEECHH---HHhh-----------c---------CCCEEEEEee
Confidence 1111 22234688999999984 458888877542 2221 1 2235999999
Q ss_pred CCCCceeEEEEECCceeEEEeeeC-CCC-CCee-------e----ecCCCCce-------eeeeeCC--HHHHHHHHHHH
Q 001944 164 PTGGTDVKVYTVGPEYAHAEARKS-PVV-DGVV-------M----RNPDGKEV-------RYPVLLT--PNEKQMAREVC 221 (993)
Q Consensus 164 ~t~G~DIKVytVG~~~vhAe~RKS-P~v-DG~v-------r----rN~~gke~-------r~~v~Lt--~eEk~iA~ka~ 221 (993)
.-+|.=-||||||+.+ +...|+| |-+ .|.. . ++.+-... ...+... +.-+++|..+-
T Consensus 180 NHggvLfKVyVvGd~v-~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR 258 (307)
T PF05770_consen 180 NHGGVLFKVYVVGDKV-FVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKELR 258 (307)
T ss_dssp --TTEEEEEEEETTEE-EEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHH
T ss_pred cCCCEEEEEEEecCEE-EEEECCCCCCCCcccccccccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHHHH
Confidence 9999999999999776 5566666 322 1111 1 11110000 0011221 23478999999
Q ss_pred HHhCCceeEEEEEeeCC---CcEEEeccCccccccccccHHHHHHHHHHHHH
Q 001944 222 IAFRQAVCGFDLLRCEG---RSYVCDVNGWSFVKNSYKYYDDAACVLRKMFL 270 (993)
Q Consensus 222 ~afgq~VcGfDLLRs~g---~syV~DVNGwSFVK~n~kYYddcA~iL~~~~l 270 (993)
+++|++..|||++|.++ +.||+|||=|+=+|+-..|+ .+|.+.|+
T Consensus 259 ~~lgL~LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp~f~----~~l~~~~~ 306 (307)
T PF05770_consen 259 RALGLTLFGFDVIRENGTGGRYYVIDINYFPGYKKVPDFE----SVLTDFIL 306 (307)
T ss_dssp HHHT-SEEEEEEEEGCCT-SSEEEEEEEES--TTTSCTHH----HHHHHHHH
T ss_pred HHhCcceeeeEEEEEcCCCCcEEEEEeccCCCccCCCChH----HHHHHHhh
Confidence 99999999999999854 47899999998888888898 44555443
No 39
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=98.97 E-value=2.3e-09 Score=121.42 Aligned_cols=207 Identities=15% Similarity=0.151 Sum_probs=120.9
Q ss_pred cCEEeecccCCCChH-HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 16 CDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 16 cD~LIsF~S~GFPL~-KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
.|+.|.. ...||- .....++..+ |+.-++.....+++||..+.+.|+++|||+|++..+... ++
T Consensus 63 id~vi~~--~e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~ 128 (420)
T PRK00885 63 IDLTVVG--PEAPLVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDA------------EE 128 (420)
T ss_pred CCEEEEC--CchHHHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH------------HH
Confidence 4666642 245553 2233455455 555578888999999999999999999999999887541 11
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 001944 94 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 172 (993)
Q Consensus 94 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKV 172 (993)
....- ..+++|+|+||..|. -.++++...... ....++.+-+. +.+. +..+.+|+||||+-.--.|-+
T Consensus 129 ~~~~~-~~~~~P~VvKP~~~~gs~Gv~~v~~~~e---l~~~~~~~~~~-~~~~------~~~~~vlvEe~i~G~E~sv~~ 197 (420)
T PRK00885 129 ALAYL-DEKGAPIVVKADGLAAGKGVVVAMTLEE---AKAAVDDMLAG-NKFG------DAGARVVIEEFLDGEEASFFA 197 (420)
T ss_pred HHHHH-HHcCCCEEEEeCCCCCCCcEEEeCCHHH---HHHHHHHHhhc-cccc------CCCCeEEEEEccCCcEEEEEE
Confidence 11111 134689999999875 122222221111 11122221110 0010 134579999999743233444
Q ss_pred EEECCceeE-EEeee-CCCCCCeeeecCCCCceeeeee-CCHHHH-----HHHHHHHHHhC---C---ceeEEEEEeeCC
Q 001944 173 YTVGPEYAH-AEARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAFR---Q---AVCGFDLLRCEG 238 (993)
Q Consensus 173 ytVG~~~vh-Ae~RK-SP~vDG~vrrN~~gke~r~~v~-Lt~eEk-----~iA~ka~~afg---q---~VcGfDLLRs~g 238 (993)
++-|..+.. ...|. -...+|.+.-|+.|-+.-.|.. |+++.. +|+.++.++++ . .++.+|++.+.+
T Consensus 198 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~ 277 (420)
T PRK00885 198 FVDGENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKD 277 (420)
T ss_pred EECCCceEeceeeEeeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECC
Confidence 443443322 22221 1124666666666655556664 776533 36666777654 3 567889999989
Q ss_pred CcEEEeccC
Q 001944 239 RSYVCDVNG 247 (993)
Q Consensus 239 ~syV~DVNG 247 (993)
++||+|+|.
T Consensus 278 g~~viEin~ 286 (420)
T PRK00885 278 GPKVIEFNA 286 (420)
T ss_pred CcEEEEEec
Confidence 999999994
No 40
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.92 E-value=2.1e-08 Score=124.12 Aligned_cols=203 Identities=15% Similarity=0.109 Sum_probs=129.1
Q ss_pred CCCCCCcCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccc
Q 001944 10 GTRWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFI 89 (993)
Q Consensus 10 Ve~WP~cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~ 89 (993)
+.+++..|.++++ | .+.+.-|.+-++..+.+ -|+.++-.+++||....+.|+++|||+|++..++..
T Consensus 65 ~~~~~~i~~V~~~-s-e~~v~~aa~lae~lglp-g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~~~---------- 131 (887)
T PRK02186 65 VSSLDGVAGIMSS-S-EYFIEVASEVARRLGLP-AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALR---------- 131 (887)
T ss_pred HHhcCCCCEEEeC-c-hhhHHHHHHHHHHhCcC-CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeCCH----------
Confidence 3456677888887 3 34454455555555533 378899999999999999999999999999988652
Q ss_pred cccceeeecCeeccCcEEEeeccccC-cceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCc
Q 001944 90 EEEDFVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGT 168 (993)
Q Consensus 90 e~~d~i~v~g~~~~kPfVeKpv~Ged-Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~ 168 (993)
++..... ..+++|+|+||++|.. .+|++. .+.. -....+..+. . ...+.||+||||+-.--
T Consensus 132 --~e~~~~~-~~~~~PvVVKP~~g~gS~GV~~v--~~~~-el~~a~~~~~-----------~-~~~~~~lvEEfI~G~E~ 193 (887)
T PRK02186 132 --AVALDAL-DGLTYPVVVKPRMGSGSVGVRLC--ASVA-EAAAHCAALR-----------R-AGTRAALVQAYVEGDEY 193 (887)
T ss_pred --HHHHHHH-HhCCCCEEEEeCCCCCCCCeEEE--CCHH-HHHHHHHHHH-----------h-cCCCcEEEeecccCCcE
Confidence 1211111 2356899999999861 222221 1110 0011111110 0 12678999999986555
Q ss_pred eeEEEEECCc-eeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhCC--ceeEEEEEeeCCCcE
Q 001944 169 DVKVYTVGPE-YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQ--AVCGFDLLRCEGRSY 241 (993)
Q Consensus 169 DIKVytVG~~-~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~e----Ek~iA~ka~~afgq--~VcGfDLLRs~g~sy 241 (993)
.|-+++.++. .+.+..++.......|.- .+.-+|..++++ -.+++.++++++|. .++++|+..+.+++|
T Consensus 194 sVe~i~~~g~~~i~~i~~k~~~~~~~~ve----~g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g~~ 269 (887)
T PRK02186 194 SVETLTVARGHQVLGITRKHLGPPPHFVE----IGHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDTVV 269 (887)
T ss_pred EEEEEEECCcEEEEEEEeeecCCCCCeEE----eccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCCEE
Confidence 6777776543 455566654211111211 112356677753 45788999999998 578999999999999
Q ss_pred EEeccC
Q 001944 242 VCDVNG 247 (993)
Q Consensus 242 V~DVNG 247 (993)
|+|||.
T Consensus 270 liEIn~ 275 (887)
T PRK02186 270 IIEINP 275 (887)
T ss_pred EEEECC
Confidence 999994
No 41
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.88 E-value=6.1e-09 Score=131.04 Aligned_cols=197 Identities=18% Similarity=0.282 Sum_probs=126.9
Q ss_pred cCEEeecccCCCChHHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 001944 16 CDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 94 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 94 (993)
.|..|..+..-.|+ .....++..+ |++-|+.++..++.||.+..++|+++|||+|++..+.. .++.
T Consensus 630 ~dgVi~~~g~~~~~-~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s------------~ee~ 696 (1066)
T PRK05294 630 PKGVIVQFGGQTPL-KLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATS------------VEEA 696 (1066)
T ss_pred CCEEEEEeCchhHH-HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECC------------HHHH
Confidence 47777777655666 4445555556 45568999999999999999999999999999999855 1122
Q ss_pred eeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCC-CceeEE
Q 001944 95 VEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG-GTDVKV 172 (993)
Q Consensus 95 i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~-G~DIKV 172 (993)
.... ..+++|+|+||..|. -.+++|.+.... ....+... .....++.+|+||||+-. .-+|-+
T Consensus 697 ~~~~-~~igyPvvVKP~~~~Gg~Gv~iv~~~ee---L~~~~~~a-----------~~~s~~~~vlIEefI~G~~E~sV~~ 761 (1066)
T PRK05294 697 LEVA-EEIGYPVLVRPSYVLGGRAMEIVYDEEE---LERYMREA-----------VKVSPDHPVLIDKFLEGAIEVDVDA 761 (1066)
T ss_pred HHHH-HhcCCCeEEEeCCCCCCCcEEEECCHHH---HHHHHHHH-----------HhhCCCCcEEEEecCCCCEEEEEEE
Confidence 2211 235689999998875 122222221110 11111110 011246679999999764 668888
Q ss_pred EEECCce-eEE-EeeeCCCCCCeeeecCCCCceee---eeeCCHH----HHHHHHHHHHHhCC-ceeEEEEEeeCCCcEE
Q 001944 173 YTVGPEY-AHA-EARKSPVVDGVVMRNPDGKEVRY---PVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 242 (993)
Q Consensus 173 ytVG~~~-vhA-e~RKSP~vDG~vrrN~~gke~r~---~v~Lt~e----Ek~iA~ka~~afgq-~VcGfDLLRs~g~syV 242 (993)
+.-|..+ +.+ +.+.. +...|.|+... +..|+++ -+++|.++++++|. .+++||++..++++||
T Consensus 762 v~dg~~v~i~~i~e~i~-------~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~~~~yV 834 (1066)
T PRK05294 762 ICDGEDVLIGGIMEHIE-------EAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKDDEVYV 834 (1066)
T ss_pred EecCCeEEEeeeEEeee-------eccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEECCeEEE
Confidence 7766532 222 23222 12345444433 3467754 46688899999997 4667999999999999
Q ss_pred EeccC
Q 001944 243 CDVNG 247 (993)
Q Consensus 243 ~DVNG 247 (993)
+|||.
T Consensus 835 iEiNp 839 (1066)
T PRK05294 835 IEVNP 839 (1066)
T ss_pred EEEec
Confidence 99995
No 42
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.87 E-value=2.7e-08 Score=125.12 Aligned_cols=198 Identities=19% Similarity=0.285 Sum_probs=125.6
Q ss_pred cCEEeecccCCCChHHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 001944 16 CDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 94 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 94 (993)
+|.+|..++.-.|+ .+...++..+ |+.-|+.+....+.||.+..++|+++|||+|++..+... ++.
T Consensus 630 idgVI~~~gg~~~~-~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~------------ee~ 696 (1050)
T TIGR01369 630 PEGVIVQFGGQTPL-NLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSV------------EEA 696 (1050)
T ss_pred CCEEEEccCcHhHH-HHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCH------------HHH
Confidence 57777666543343 2222333334 455689999999999999999999999999999998651 122
Q ss_pred eeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC-CCceeEE
Q 001944 95 VEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVKV 172 (993)
Q Consensus 95 i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t-~G~DIKV 172 (993)
.... ..+++|+|+||..|. -.++.+.+.... .+..++.+- ....++.+|+||||+. .--+|-+
T Consensus 697 ~~~~-~~igyPvIVKP~~~~Gg~gv~iv~~~ee---L~~~l~~a~-----------~~s~~~~vlVeefI~~G~E~~Vd~ 761 (1050)
T TIGR01369 697 VEFA-SEIGYPVLVRPSYVLGGRAMEIVYNEEE---LRRYLEEAV-----------EVSPEHPVLIDKYLEDAVEVDVDA 761 (1050)
T ss_pred HHHH-HhcCCCEEEEECCCCCCCCeEEECCHHH---HHHHHHHHH-----------HhCCCCCEEEeecCCCCeEEEEEE
Confidence 2211 235689999998874 123333332110 111122110 1224567999999974 4567888
Q ss_pred EEECCceeEEE-eeeCCCCCCeeeecCCCCceee--ee-eCCH----HHHHHHHHHHHHhCC-ceeEEEEEeeCCCcEEE
Q 001944 173 YTVGPEYAHAE-ARKSPVVDGVVMRNPDGKEVRY--PV-LLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYVC 243 (993)
Q Consensus 173 ytVG~~~vhAe-~RKSP~vDG~vrrN~~gke~r~--~v-~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs~g~syV~ 243 (993)
+..|++++... ... ..+.+.|.|.... |. .|++ +-+++|.++++++|. .++.||++...+++||+
T Consensus 762 l~d~g~v~i~~i~e~------~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~~~~yvI 835 (1050)
T TIGR01369 762 VSDGEEVLIPGIMEH------IEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKDGEVYVI 835 (1050)
T ss_pred EEeCCEEEEEEEEEe------ecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEECCeEEEE
Confidence 88887665432 211 1133455555432 32 5676 456788999999984 45569999999999999
Q ss_pred eccC
Q 001944 244 DVNG 247 (993)
Q Consensus 244 DVNG 247 (993)
|||.
T Consensus 836 EvNp 839 (1050)
T TIGR01369 836 EVNP 839 (1050)
T ss_pred EEeC
Confidence 9994
No 43
>PRK05586 biotin carboxylase; Validated
Probab=98.87 E-value=5e-09 Score=119.97 Aligned_cols=203 Identities=18% Similarity=0.258 Sum_probs=119.1
Q ss_pred CCcCEEeecccCCCChH-HHHHH-HhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEE--EeccCCCcccccc
Q 001944 14 PICDCLIAFYSSGYPLE-KAESY-ATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--VNREVPYQELDYF 88 (993)
Q Consensus 14 P~cD~LIsF~S~GFPL~-KAi~y-~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~--~~r~~p~~~~~~~ 88 (993)
..||++++-| ||-.+ ..+++ ++..+ ||+..+.++..+++||....++|+++|||+|++.. +..
T Consensus 73 ~~~d~i~p~~--~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~---------- 140 (447)
T PRK05586 73 TGAQAIHPGF--GFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIEN---------- 140 (447)
T ss_pred cCCCEEEcCc--cccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCC----------
Confidence 5678777643 33322 23333 23334 56889999999999999999999999999998753 222
Q ss_pred ccccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCC
Q 001944 89 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 167 (993)
Q Consensus 89 ~e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G 167 (993)
.++..... ..+++|+|+||++|. -.++++...... ....|+...+. . ...-.++.+|+||||+. +
T Consensus 141 --~~e~~~~~-~~igyPvvvKP~~gggg~Gv~~v~~~~e---l~~a~~~~~~~----~---~~~~~~~~vivEe~i~g-~ 206 (447)
T PRK05586 141 --EEEALEIA-KEIGYPVMVKASAGGGGRGIRIVRSEEE---LIKAFNTAKSE----A---KAAFGDDSMYIEKFIEN-P 206 (447)
T ss_pred --HHHHHHHH-HHcCCCEEEEECCCCCCCeeEEECCHHH---HHHHHHHHHHH----H---HHhcCCCeEEEEecCCC-C
Confidence 11222211 235789999999986 122222221111 11222211100 0 00012467999999963 4
Q ss_pred ceeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeee-eeCCH----HHHHHHHHHHHHhCCceeE-EEEEeeC-
Q 001944 168 TDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYP-VLLTP----NEKQMAREVCIAFRQAVCG-FDLLRCE- 237 (993)
Q Consensus 168 ~DIKVytVG~---~~vhAe~RKSP~vDG~vrrN~~gke~r~~-v~Lt~----eEk~iA~ka~~afgq~VcG-fDLLRs~- 237 (993)
+.+-|.+++. ++++.-.|... ..++|..--+.. | ..|++ +-+++|.++++++|..-++ ||++.+.
T Consensus 207 ~ei~v~v~~d~~G~~~~~~~~~~~----~~~~~~~~~~~~-p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~~ 281 (447)
T PRK05586 207 KHIEFQILGDNYGNVVHLGERDCS----LQRRNQKVLEEA-PSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKD 281 (447)
T ss_pred eEEEEEEEECCCCCEEEEeceecc----eEecccceEEEc-CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcCC
Confidence 6788877763 55555444221 122221111111 2 23666 4567899999999976555 9999874
Q ss_pred CCcEEEeccC
Q 001944 238 GRSYVCDVNG 247 (993)
Q Consensus 238 g~syV~DVNG 247 (993)
|..||||||.
T Consensus 282 g~~~~iEvNp 291 (447)
T PRK05586 282 GNFYFMEMNT 291 (447)
T ss_pred CCEEEEEEEC
Confidence 5589999994
No 44
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=98.85 E-value=5e-09 Score=104.74 Aligned_cols=149 Identities=25% Similarity=0.324 Sum_probs=72.5
Q ss_pred hhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHH
Q 001944 53 LHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKE 132 (993)
Q Consensus 53 l~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~r 132 (993)
|.||+++++.|+++|||+|.++...... ...+|+|+||..|. -|.|. +
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~~~~~~--------------------~~~~~~viKp~~G~-----------Gg~~i-~ 48 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLRDSEPE--------------------PIDGPWVIKPRDGA-----------GGEGI-R 48 (161)
T ss_dssp -TSHHHHHHHHTTT-S--------EESS----------------------SSSEEEEESS-------------------B
T ss_pred CCCHHHHHHHHHccCCCCCCcccccccc--------------------ccCCcEEEEeCCCC-----------CCCCe-E
Confidence 5799999999999999999555443311 01469999999997 22233 2
Q ss_pred HHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCc---eeEEEeeeCCCC-CCeeeecCCCCceeeeee
Q 001944 133 LFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPE---YAHAEARKSPVV-DGVVMRNPDGKEVRYPVL 208 (993)
Q Consensus 133 Lfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~---~vhAe~RKSP~v-DG~vrrN~~gke~r~~v~ 208 (993)
.++.- .+... . .....|+||||+ |+-.-|.++... .+-+..|+-=.. ++.++.+ |+-......
T Consensus 49 ~~~~~----~~~~~---~--~~~~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~~~--G~~~~~~~~ 115 (161)
T PF02655_consen 49 IVDSE----DELEE---F--LNKLRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLIGNDDGRFRYC--GGIVPADTP 115 (161)
T ss_dssp --SS------TTE------------EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET----TEEE--EEEES----
T ss_pred EECCc----hhhcc---c--cccceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhhccccceeeec--ccccccCCc
Confidence 33311 11111 1 111129999997 555555444432 334444443100 1112111 222222233
Q ss_pred CCHHHHHHHHHHHHHh-CC-ceeEEEEEeeCCCcEEEecc
Q 001944 209 LTPNEKQMAREVCIAF-RQ-AVCGFDLLRCEGRSYVCDVN 246 (993)
Q Consensus 209 Lt~eEk~iA~ka~~af-gq-~VcGfDLLRs~g~syV~DVN 246 (993)
..++-.++|.+++++| |+ ..+|||++...+++||+|||
T Consensus 116 ~~~~~~~~~~~i~~~l~gl~G~~giD~I~~~~~~~viEIN 155 (161)
T PF02655_consen 116 LKEEIIELARRIAEALPGLRGYVGIDFILDDGGPYVIEIN 155 (161)
T ss_dssp HHHHHHHHHHHHHTTSTT--EEEEEEEEESS-SEEEEEEE
T ss_pred hHHHHHHHHHHHHHHcCCCeeeEeEEEEEeCCcEEEEEEc
Confidence 4667788999999999 65 69999999999999999999
No 45
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=98.85 E-value=6.5e-09 Score=121.37 Aligned_cols=201 Identities=15% Similarity=0.250 Sum_probs=122.2
Q ss_pred cCEEeecccCCCChH--HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEE-eccCCCccccccccc
Q 001944 16 CDCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIEE 91 (993)
Q Consensus 16 cD~LIsF~S~GFPL~--KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~-~r~~p~~~~~~~~e~ 91 (993)
+|.++..| ||-.+ ...+.++..+ ||+-++.++..++.||..+.++|+++|||+|+.... ..+ .
T Consensus 75 ~daI~pg~--gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~-----------~ 141 (499)
T PRK08654 75 ADAIHPGY--GFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIED-----------I 141 (499)
T ss_pred CCEEEECC--CccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCC-----------H
Confidence 67888765 55543 2334444444 567789999999999999999999999999877643 111 1
Q ss_pred cceeeecCeeccCcEEEeeccccC-cceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCcee
Q 001944 92 EDFVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 170 (993)
Q Consensus 92 ~d~i~v~g~~~~kPfVeKpv~Ged-Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DI 170 (993)
++.... -..+++|+|+||+.|.. .++.+-.... -....|+... ++ . ...+ .++.+++|+||.. ++.|
T Consensus 142 ~e~~~~-a~~igyPvvIKp~~GgGG~Gv~iv~~~~---eL~~a~~~~~---~~-a--~~~f-~~~~v~vE~~I~~-~r~i 209 (499)
T PRK08654 142 EEAKEI-AEEIGYPVIIKASAGGGGIGMRVVYSEE---ELEDAIESTQ---SI-A--QSAF-GDSTVFIEKYLEK-PRHI 209 (499)
T ss_pred HHHHHH-HHHhCCCEEEEeCCCCCCCeEEEeCCHH---HHHHHHHHHH---HH-H--HHhC-CCCeEEEEeCCCC-CcEE
Confidence 122221 12456899999999851 1122111110 0111222110 00 0 0001 2567899999964 6778
Q ss_pred EEEEECC---ceeEEEeeeCCCCCCeeeecCCCCcee-ee-eeCCHH----HHHHHHHHHHHhCCceeE-EEEEeeCCCc
Q 001944 171 KVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVR-YP-VLLTPN----EKQMAREVCIAFRQAVCG-FDLLRCEGRS 240 (993)
Q Consensus 171 KVytVG~---~~vhAe~RKSP~vDG~vrrN~~gke~r-~~-v~Lt~e----Ek~iA~ka~~afgq~VcG-fDLLRs~g~s 240 (993)
-|-++|+ +++|.-.|...+ -||+ +|-+- .| ..|+++ -+++|.++++++|..=+| ||++..+|++
T Consensus 210 eVqvl~d~~G~vv~l~~recsi----qrr~--qk~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~~g~~ 283 (499)
T PRK08654 210 EIQILADKHGNVIHLGDRECSI----QRRH--QKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSNGNF 283 (499)
T ss_pred EEEEEEcCCCCEEEEeeecccc----ccCc--cceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCcE
Confidence 8877764 466666664321 1222 22111 12 135553 367899999999987666 9999888899
Q ss_pred EEEeccC
Q 001944 241 YVCDVNG 247 (993)
Q Consensus 241 yV~DVNG 247 (993)
||+|||.
T Consensus 284 yflEiNp 290 (499)
T PRK08654 284 YFLEMNT 290 (499)
T ss_pred EEEEEEC
Confidence 9999995
No 46
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=98.84 E-value=5.8e-09 Score=120.85 Aligned_cols=205 Identities=16% Similarity=0.206 Sum_probs=121.2
Q ss_pred CcCEEeecccCCCChH--HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEE-EeccCCCcccccccc
Q 001944 15 ICDCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL-VNREVPYQELDYFIE 90 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~--KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~-~~r~~p~~~~~~~~e 90 (993)
.+|.+++.| ||-.+ ...+.++..+ +|+-++.+...+++||....++|.++|||+|+... +....
T Consensus 73 ~iDaI~pg~--g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~---------- 140 (478)
T PRK08463 73 GADAIHPGY--GFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSES---------- 140 (478)
T ss_pred CCCEEEECC--CccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCC----------
Confidence 378898866 45221 2334444454 45568999999999999999999999999977433 22110
Q ss_pred ccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce
Q 001944 91 EEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 169 (993)
Q Consensus 91 ~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~D 169 (993)
.++.... -..+++|+|+||++|. -.+|++-..... ....|+... + +......++.+++|+||.. ++.
T Consensus 141 ~~~~~~~-~~~igyPvvvKP~~ggGg~Gv~iv~~~~e---L~~a~~~~~---~----~a~~~~~~~~vlvEefI~~-~~~ 208 (478)
T PRK08463 141 MEEIKIF-ARKIGYPVILKASGGGGGRGIRVVHKEED---LENAFESCK---R----EALAYFNNDEVFMEKYVVN-PRH 208 (478)
T ss_pred HHHHHHH-HHHhCCCEEEEeCCCCCCCceEEeCCHHH---HHHHHHHHH---H----HHHHhcCCCcEEEEecCCC-CeE
Confidence 1122111 1235689999999985 122222221110 111122110 0 0001123567999999975 666
Q ss_pred eEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeee-eCCHHHH----HHHHHHHHHhCCceeE-EEEEeeC-CC
Q 001944 170 VKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTPNEK----QMAREVCIAFRQAVCG-FDLLRCE-GR 239 (993)
Q Consensus 170 IKVytVG~---~~vhAe~RKSP~vDG~vrrN~~gke~r~~v-~Lt~eEk----~iA~ka~~afgq~VcG-fDLLRs~-g~ 239 (993)
|-+-++|. +++|...|...+ .+++..--+.. |. .|+++.+ ++|.++++++|..-+| ||++.+. |+
T Consensus 209 iev~v~~d~~g~v~~~~er~~s~----~~~~~~~ie~~-P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~ 283 (478)
T PRK08463 209 IEFQILGDNYGNIIHLCERDCSI----QRRHQKVIEIA-PCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNR 283 (478)
T ss_pred EEEEEEEcCCCCEEEEeccCCcc----ccccCceEEEC-CCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCC
Confidence 77656654 466666664321 22222111221 22 4777665 4899999999977666 9999874 77
Q ss_pred cEEEeccCc
Q 001944 240 SYVCDVNGW 248 (993)
Q Consensus 240 syV~DVNGw 248 (993)
+||||||.=
T Consensus 284 ~y~iEiN~R 292 (478)
T PRK08463 284 FYFMEMNTR 292 (478)
T ss_pred EEEEEEECC
Confidence 999999943
No 47
>PRK08462 biotin carboxylase; Validated
Probab=98.84 E-value=5.9e-09 Score=118.96 Aligned_cols=203 Identities=18% Similarity=0.253 Sum_probs=117.5
Q ss_pred CcCEEeecccCCCCh-HHHH-HHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEE-eccCCCcccccccc
Q 001944 15 ICDCLIAFYSSGYPL-EKAE-SYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIE 90 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL-~KAi-~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~-~r~~p~~~~~~~~e 90 (993)
.+|++|+-+ ||-- ...+ +.++..+ |++-++.++..+++||..+.+.|.++|||+|++... ..+
T Consensus 76 ~~D~i~pg~--g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~----------- 142 (445)
T PRK08462 76 EADAIFPGY--GFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKS----------- 142 (445)
T ss_pred CCCEEEECC--CccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCC-----------
Confidence 378888876 4522 2333 3565655 467899999999999999999999999999886532 111
Q ss_pred ccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce
Q 001944 91 EEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 169 (993)
Q Consensus 91 ~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~D 169 (993)
.++.... -..+++|+|+||++|. -.++++-..... ....|+... ++ ......++.+|.||||.. ++.
T Consensus 143 ~~~~~~~-~~~~g~PvvvKP~~g~gs~Gv~~v~~~~e---L~~~~~~~~---~~----~~~~~~~~~vlvEe~i~g-~~e 210 (445)
T PRK08462 143 YEEAKKI-AKEIGYPVILKAAAGGGGRGMRVVEDESD---LENLYLAAE---SE----ALSAFGDGTMYMEKFINN-PRH 210 (445)
T ss_pred HHHHHHH-HHHcCCCEEEEeCCCCCCCCeEEECCHHH---HHHHHHHHH---HH----HHhccCCCcEEEeccCCC-CeE
Confidence 1111111 1235689999999986 122222111100 111111110 00 000113567999999965 566
Q ss_pred eEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeee-eCCH----HHHHHHHHHHHHhCCc-eeEEEEEee-CCC
Q 001944 170 VKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTP----NEKQMAREVCIAFRQA-VCGFDLLRC-EGR 239 (993)
Q Consensus 170 IKVytVG~---~~vhAe~RKSP~vDG~vrrN~~gke~r~~v-~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs-~g~ 239 (993)
+.|.++|. ++++.-.|...+ .+++..--+. .|. .|++ +-+++|.++++++|.. ++-||++.+ +|+
T Consensus 211 ~~v~v~~~~~g~~~~~g~~~~~~----~~~~~~~~~~-~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~g~ 285 (445)
T PRK08462 211 IEVQILGDKHGNVIHVGERDCSL----QRRHQKLIEE-SPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSNLD 285 (445)
T ss_pred EEEEEEECCCCCEEEEEeccccc----eecccceEEE-cCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeCCCC
Confidence 77777753 344443232210 1111100011 122 4554 5677899999999985 334999987 468
Q ss_pred cEEEeccC
Q 001944 240 SYVCDVNG 247 (993)
Q Consensus 240 syV~DVNG 247 (993)
+||+|||.
T Consensus 286 ~~viEiNp 293 (445)
T PRK08462 286 FYFMEMNT 293 (445)
T ss_pred EEEEEEEC
Confidence 99999993
No 48
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=98.82 E-value=9e-09 Score=119.03 Aligned_cols=203 Identities=18% Similarity=0.249 Sum_probs=120.9
Q ss_pred CcCEEeecccCCCChH--HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEE-eccCCCcccccccc
Q 001944 15 ICDCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIE 90 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~--KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~-~r~~p~~~~~~~~e 90 (993)
.||++++-| ||--+ ...+.++..+ ||+-++.+...+++||....++|+++|||+|++... ..+
T Consensus 73 ~~D~I~pg~--g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~----------- 139 (472)
T PRK07178 73 GCDALHPGY--GFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLAD----------- 139 (472)
T ss_pred CCCEEEeCC--CCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCC-----------
Confidence 489999844 44221 2334445554 567789999999999999999999999999887542 111
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccc---cccccccCcceEEeeccCCCC
Q 001944 91 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHP---DVRRVRREGSYIYEEFMPTGG 167 (993)
Q Consensus 91 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p---~~~~~r~~gsyIyEEFi~t~G 167 (993)
.++.... -..+++|+|+||++|. -|-|++ +.+....-...|+- +......++.++.|+||.. +
T Consensus 140 ~~e~~~~-~~~igyPvvvKp~~gg-----------Gg~Gv~-~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~-~ 205 (472)
T PRK07178 140 LDEALAE-AERIGYPVMLKATSGG-----------GGRGIR-RCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVN-P 205 (472)
T ss_pred HHHHHHH-HHHcCCcEEEEeCCCC-----------CCCCce-EeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCC-C
Confidence 1122221 1245789999999986 222332 22211100000000 0000012445889999954 6
Q ss_pred ceeEEEEEC---CceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHH----HHHHHHHHHhCCc-eeEEEEEee-CC
Q 001944 168 TDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQA-VCGFDLLRC-EG 238 (993)
Q Consensus 168 ~DIKVytVG---~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk----~iA~ka~~afgq~-VcGfDLLRs-~g 238 (993)
+.|-|-++| ++.+|...|... ..+++..-.|..-...|+++.+ ++|.++++++|.. ++.||++.. +|
T Consensus 206 ~eiev~v~~d~~G~~v~~~er~~s----~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g 281 (472)
T PRK07178 206 KHIEVQILADSHGNVVHLFERDCS----IQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADG 281 (472)
T ss_pred eEEEEEEEEECCCCEEEEEccccc----eEecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCC
Confidence 667665554 356666555431 1233332223321226776654 5999999999975 445999985 67
Q ss_pred CcEEEeccCc
Q 001944 239 RSYVCDVNGW 248 (993)
Q Consensus 239 ~syV~DVNGw 248 (993)
++||+|||.=
T Consensus 282 ~~y~iEiNpR 291 (472)
T PRK07178 282 EVYFMEMNTR 291 (472)
T ss_pred CEEEEEEeCC
Confidence 8999999943
No 49
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.82 E-value=1.4e-08 Score=111.01 Aligned_cols=187 Identities=24% Similarity=0.293 Sum_probs=120.3
Q ss_pred CCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEecc
Q 001944 45 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 124 (993)
Q Consensus 45 Ndl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~ 124 (993)
|+-..-.++.||....+++.+.|||+|+.++.... .-.........++..+.-...-..+||+||+.|+
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~---------- 84 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGR-DYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGS---------- 84 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccc-eEEecccccCHHHHHHHHHhccCCcEEEEeCCCC----------
Confidence 88888999999999999999999999995552221 0000000111122222111111269999999997
Q ss_pred CCCChHHHHHhhcCCCccccccccc----ccccCc--ceEEeeccCC---------CC-ceeEEEEE----CCceeEEEe
Q 001944 125 SAGGGMKELFRKVGNRSSEFHPDVR----RVRREG--SYIYEEFMPT---------GG-TDVKVYTV----GPEYAHAEA 184 (993)
Q Consensus 125 ~~GgG~~rLfrkign~sS~~~p~~~----~~r~~g--syIyEEFi~t---------~G-~DIKVytV----G~~~vhAe~ 184 (993)
.|.|+- ++...+. ..+..... .....+ .||+||||.- .+ -+|||.|+ ++.++.|+.
T Consensus 85 -~G~Gi~-~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~l 160 (285)
T PF14397_consen 85 -GGKGIL-VIDRRDG--SEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAML 160 (285)
T ss_pred -CccCEE-EEEeecC--cccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEE
Confidence 444543 2111110 11111111 111222 8999999864 12 68999999 346789999
Q ss_pred eeCCCCCCeeeecCCCCceeeeeeCC----------------------------------HHHHHHHHHHHHHh-CCcee
Q 001944 185 RKSPVVDGVVMRNPDGKEVRYPVLLT----------------------------------PNEKQMAREVCIAF-RQAVC 229 (993)
Q Consensus 185 RKSP~vDG~vrrN~~gke~r~~v~Lt----------------------------------~eEk~iA~ka~~af-gq~Vc 229 (993)
|-+. .|...-|.|.|++.-+|-+. ++-.++|.++++.| +..+.
T Consensus 161 Rlg~--~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~i 238 (285)
T PF14397_consen 161 RLGR--GGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYI 238 (285)
T ss_pred EeCC--CCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeE
Confidence 9984 66677788766665444321 35578889999887 57899
Q ss_pred EEEEEeeCCCcEEEeccCc
Q 001944 230 GFDLLRCEGRSYVCDVNGW 248 (993)
Q Consensus 230 GfDLLRs~g~syV~DVNGw 248 (993)
|.|+.-+.++|+|+|.|..
T Consensus 239 GWDvait~~Gp~llE~N~~ 257 (285)
T PF14397_consen 239 GWDVAITEDGPVLLEGNAR 257 (285)
T ss_pred EEEEEEcCCCcEEEEeeCC
Confidence 9999999888999999965
No 50
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.81 E-value=2.1e-08 Score=113.40 Aligned_cols=204 Identities=16% Similarity=0.204 Sum_probs=116.2
Q ss_pred cCEEeecccCCCCh-HHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 16 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 16 cD~LIsF~S~GFPL-~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
+|..|... ..|| ..+.+.++..+ |++-++.....+++||....++|+++|||+|++..+... ++
T Consensus 65 id~vi~~~--e~~l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~------------~~ 130 (423)
T TIGR00877 65 IDLAVIGP--EAPLVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDP------------EE 130 (423)
T ss_pred CCEEEECC--chHHHHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCH------------HH
Confidence 56777643 2343 34556777667 666688999999999999999999999999999888651 12
Q ss_pred eeeecCeeccCc-EEEeeccccC-cceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 001944 94 FVEVHGNRFWKP-FVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 171 (993)
Q Consensus 94 ~i~v~g~~~~kP-fVeKpv~Ged-Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIK 171 (993)
....- ..++.| +|+||..|.. .++++...... ....++.+-+.+ +- ..+..+|+||||+ |..+-
T Consensus 131 ~~~~~-~~~g~P~~VvKp~~~~gg~Gv~~v~~~~e---l~~~~~~~~~~~--~g------~~~~~~lvEe~i~--G~E~s 196 (423)
T TIGR00877 131 ALSYI-QEKGAPAIVVKADGLAAGKGVIVAKTNEE---AIKAVEEILEQK--FG------DAGERVVIEEFLD--GEEVS 196 (423)
T ss_pred HHHHH-HhcCCCeEEEEECCCCCCCCEEEECCHHH---HHHHHHHHHHHh--cC------CCCCeEEEEECcc--CceEE
Confidence 22211 235689 9999998751 22322221110 111222111000 00 1245799999997 55555
Q ss_pred EEEE--CCceeE-EEeeeC-CCCCCeeeecCCCCceeeee-eCCHH-----HHHHHHHHHHHhC------CceeEEEEEe
Q 001944 172 VYTV--GPEYAH-AEARKS-PVVDGVVMRNPDGKEVRYPV-LLTPN-----EKQMAREVCIAFR------QAVCGFDLLR 235 (993)
Q Consensus 172 VytV--G~~~vh-Ae~RKS-P~vDG~vrrN~~gke~r~~v-~Lt~e-----Ek~iA~ka~~afg------q~VcGfDLLR 235 (993)
|-++ |..+.. ..+|.- ...+|..--++.|-+.-.|. .++++ .++++.++.++++ ..++.+|++.
T Consensus 197 v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~ 276 (423)
T TIGR00877 197 LLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLML 276 (423)
T ss_pred EEEEEcCCeEEeceeeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEE
Confidence 5444 443322 122211 11122221121111122222 24443 2456666777774 3678899999
Q ss_pred eCCCcEEEeccC
Q 001944 236 CEGRSYVCDVNG 247 (993)
Q Consensus 236 s~g~syV~DVNG 247 (993)
+.+++||||||.
T Consensus 277 t~~g~~viEin~ 288 (423)
T TIGR00877 277 TKEGPKVLEFNC 288 (423)
T ss_pred ECCCcEEEEEEc
Confidence 988899999993
No 51
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.80 E-value=2.1e-08 Score=114.07 Aligned_cols=203 Identities=14% Similarity=0.164 Sum_probs=115.0
Q ss_pred CEEeecccCCCChH--HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 17 DCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 17 D~LIsF~S~GFPL~--KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
|.+|..+ ||-.+ .....++..+ |+.-++.++..+++||....+.|.++|||+|++....-.. .++
T Consensus 76 d~I~p~~--~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~----------~~e 143 (450)
T PRK06111 76 EAIHPGY--GLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLED----------AEE 143 (450)
T ss_pred CEEEeCC--CccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCC----------HHH
Confidence 6677654 23211 2334455444 4566889999999999999999999999999873221111 111
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 001944 94 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 172 (993)
Q Consensus 94 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKV 172 (993)
..... ..+++|+|+||++|. -+++++...... ....++....... ....++.+|+||||.- ++.+-+
T Consensus 144 ~~~~~-~~~~~P~VvKP~~g~gs~Gv~iv~~~~e---l~~a~~~~~~~~~-------~~~~~~~~lvEe~i~g-~~e~~v 211 (450)
T PRK06111 144 AIAIA-RQIGYPVMLKASAGGGGIGMQLVETEQE---LTKAFESNKKRAA-------NFFGNGEMYIEKYIED-PRHIEI 211 (450)
T ss_pred HHHHH-HHhCCCEEEEeCCCCCCceEEEECCHHH---HHHHHHHHHHHHH-------HhcCCCcEEEEcccCC-CcEEEE
Confidence 11111 235689999999985 244444443221 2223332210000 0112557999999973 345655
Q ss_pred EEEC---CceeEEEeeeCCCCCCeeeecCCCCceeeee-eCC----HHHHHHHHHHHHHhCC-ceeEEEEEeeCCC-cEE
Q 001944 173 YTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLT----PNEKQMAREVCIAFRQ-AVCGFDLLRCEGR-SYV 242 (993)
Q Consensus 173 ytVG---~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v-~Lt----~eEk~iA~ka~~afgq-~VcGfDLLRs~g~-syV 242 (993)
-+++ ++.++.-.|..++ .+.+..--+. .|. .++ .+-+++|.++++++|. .++.||++.+.++ +||
T Consensus 212 ~v~~~~~g~~~~~~~~~~~~----~~~~~~~~~~-~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~v 286 (450)
T PRK06111 212 QLLADTHGNTVYLWERECSV----QRRHQKVIEE-APSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYF 286 (450)
T ss_pred EEEEcCCCCEEEEEeecccc----cccccceEEe-cCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEE
Confidence 4443 3344443333221 0101000000 011 133 3556889999999998 5777999988666 999
Q ss_pred EeccCc
Q 001944 243 CDVNGW 248 (993)
Q Consensus 243 ~DVNGw 248 (993)
+|||.=
T Consensus 287 iEiN~R 292 (450)
T PRK06111 287 LEMNTR 292 (450)
T ss_pred EEEECC
Confidence 999954
No 52
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=98.77 E-value=1.1e-07 Score=113.10 Aligned_cols=199 Identities=15% Similarity=0.191 Sum_probs=124.1
Q ss_pred cCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 001944 16 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 95 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 95 (993)
||+ |.|-+...|.+ ++++++..++.+.++.++..+++||...-+.|+++|||+|++..+... ++..
T Consensus 84 ~dv-It~e~e~v~~~-~l~~le~~gi~v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~------------~el~ 149 (577)
T PLN02948 84 CDV-LTVEIEHVDVD-TLEALEKQGVDVQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDL------------ESAE 149 (577)
T ss_pred CCE-EEEecCCCCHH-HHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCH------------HHHH
Confidence 565 45556666764 458888887667799999999999999999999999999999988541 1111
Q ss_pred eecCeeccCcEEEeecccc--CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 001944 96 EVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 173 (993)
Q Consensus 96 ~v~g~~~~kPfVeKpv~Ge--dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVy 173 (993)
. ....+++|+|+||..|. -.++++-..... ....++... ..+..+|.|+||+ ..+.+-|.
T Consensus 150 ~-~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~e---L~~a~~~~~-------------~~~~~vlvEefI~-~~~EisV~ 211 (577)
T PLN02948 150 K-AGDLFGYPLMLKSRRLAYDGRGNAVAKTEED---LSSAVAALG-------------GFERGLYAEKWAP-FVKELAVM 211 (577)
T ss_pred H-HHHhcCCcEEEEeCCCCCCCCCeEEECCHHH---HHHHHHHhh-------------CCCCcEEEEecCC-CCeEEEEE
Confidence 1 12245789999999753 244444332221 222222221 1234689999994 24677777
Q ss_pred EECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEeeCCC-cEEEeccC
Q 001944 174 TVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGR-SYVCDVNG 247 (993)
Q Consensus 174 tVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs~g~-syV~DVNG 247 (993)
+++.. ..+...-|++.. ..+|........|..|++ +-+++|.++++++|.. ++.+|++.+.++ .||+|||.
T Consensus 212 v~r~~--~G~i~~~p~~E~-~~~~~~~~~~~~Pa~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EInp 288 (577)
T PLN02948 212 VARSR--DGSTRCYPVVET-IHKDNICHVVEAPANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEVAP 288 (577)
T ss_pred EEECC--CCCEEEecCccc-EEECCeeEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEEeC
Confidence 77421 001111343221 222211112235666776 4567789999999733 557898887554 79999994
Q ss_pred cc
Q 001944 248 WS 249 (993)
Q Consensus 248 wS 249 (993)
-.
T Consensus 289 Rp 290 (577)
T PLN02948 289 RP 290 (577)
T ss_pred CC
Confidence 43
No 53
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.77 E-value=1.4e-08 Score=115.80 Aligned_cols=202 Identities=15% Similarity=0.215 Sum_probs=115.2
Q ss_pred cCEEeecccCCCChH--HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCcccccccc
Q 001944 16 CDCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIE 90 (993)
Q Consensus 16 cD~LIsF~S~GFPL~--KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~e 90 (993)
||.+|+.+ ||-.+ .....++..+ |++.++.++..+++||....+.|+++|||+|++. .+..
T Consensus 75 id~I~p~~--~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~------------ 140 (451)
T PRK08591 75 ADAIHPGY--GFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDD------------ 140 (451)
T ss_pred CCEEEECC--CccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCC------------
Confidence 89999876 33222 2334455555 5677999999999999999999999999999864 3322
Q ss_pred ccceeeecCeeccCcEEEeeccccC-cceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce
Q 001944 91 EEDFVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 169 (993)
Q Consensus 91 ~~d~i~v~g~~~~kPfVeKpv~Ged-Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~D 169 (993)
.++.... -..+++|+|+||++|.. .+|++-..... ....++.+...+ . ....+..+|+||||+. ++.
T Consensus 141 ~~~~~~~-~~~~g~PvvvKP~~g~gs~Gv~iv~~~~e---l~~~~~~~~~~~---~----~~~~~~~vlvEe~i~g-~~e 208 (451)
T PRK08591 141 EEEALAI-AKEIGYPVIIKATAGGGGRGMRVVRTEAE---LEKAFSMARAEA---K----AAFGNPGVYMEKYLEN-PRH 208 (451)
T ss_pred HHHHHHH-HHHcCCCEEEEECCCCCCceEEEECCHHH---HHHHHHHHHHHH---H----HhcCCCCEEEEeCCCC-CcE
Confidence 1122221 12356899999999861 22222221110 112222110000 0 0012456899999964 455
Q ss_pred eEEEEEC---CceeEEEeeeCCCCCCeeeecCCCCceeeeeeCC----HHHHHHHHHHHHHhCCc-eeEEEEEee-CCCc
Q 001944 170 VKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT----PNEKQMAREVCIAFRQA-VCGFDLLRC-EGRS 240 (993)
Q Consensus 170 IKVytVG---~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt----~eEk~iA~ka~~afgq~-VcGfDLLRs-~g~s 240 (993)
+-|-+++ +++++.-.|.... .+++..-.+..-+..|+ .+-.++|.++++++|.. ++.||++.+ +|++
T Consensus 209 ~~v~v~~d~~g~~~~~~~~~~~~----~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~ 284 (451)
T PRK08591 209 IEIQVLADGHGNAIHLGERDCSL----QRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEF 284 (451)
T ss_pred EEEEEEEcCCCCEEEEecccccc----eecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCE
Confidence 6654444 3455443222110 01110000000011344 45567899999999875 445999988 6779
Q ss_pred EEEeccC
Q 001944 241 YVCDVNG 247 (993)
Q Consensus 241 yV~DVNG 247 (993)
||+|||.
T Consensus 285 ~viEINp 291 (451)
T PRK08591 285 YFIEMNT 291 (451)
T ss_pred EEEEEEC
Confidence 9999995
No 54
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.77 E-value=3e-08 Score=114.01 Aligned_cols=204 Identities=13% Similarity=0.103 Sum_probs=120.8
Q ss_pred cCEEeecccCCCChHHH-HHHHhhcCCc-ccCCcchhhhhhhHHHHHHHHHhCCCCCCCEE-EEeccCCCcccccccccc
Q 001944 16 CDCLIAFYSSGYPLEKA-ESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA-LVNREVPYQELDYFIEEE 92 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KA-i~y~~lr~p~-~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~-~~~r~~p~~~~~~~~e~~ 92 (993)
.|..|+. ++ -||-.+ ...++..+.. ...+.+.-.+++||..+.+.|.++|||+|++. .+... +
T Consensus 66 id~Vi~~-~d-~~l~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~------------~ 131 (435)
T PRK06395 66 VDIVFVG-PD-PVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSE------------K 131 (435)
T ss_pred CCEEEEC-CC-hHHHHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccceeCCh------------H
Confidence 5888886 33 466443 2333344543 45889999999999999999999999998665 44221 1
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc-ccCcceEEeeccCCCCceeE
Q 001944 93 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPTGGTDVK 171 (993)
Q Consensus 93 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~-r~~gsyIyEEFi~t~G~DIK 171 (993)
+..... ..++.|+|+||..+. .|-|+.....++.+....++. ...+ ..++.+|+||||.-.=-.|=
T Consensus 132 e~~~~~-~~~~~PvVVKP~~~s-----------ggkGV~v~~~~~~~~~ea~~~-~~~~~~~~~~viIEEfl~G~E~Svd 198 (435)
T PRK06395 132 DAARDY-ITSMKDVAVKPIGLT-----------GGKGVKVTGEQLNSVDEAIRY-AIEILDRDGVVLIEKKMTGEEFSLQ 198 (435)
T ss_pred HHHHHH-HhhCCCEEEEeCCCC-----------CCCCeEEecCchhhHHHHHHH-HHHHhCCCCcEEEEeecCCceEEEE
Confidence 111111 123579999999987 555664221111111111110 0011 34567999999964334566
Q ss_pred EEEECCceeEE-Eeee-CCCCCCeeeecCCCCceee-----eeeCCHHHH----HHHHHHHHHhCC------ceeEEEEE
Q 001944 172 VYTVGPEYAHA-EARK-SPVVDGVVMRNPDGKEVRY-----PVLLTPNEK----QMAREVCIAFRQ------AVCGFDLL 234 (993)
Q Consensus 172 VytVG~~~vhA-e~RK-SP~vDG~vrrN~~gke~r~-----~v~Lt~eEk----~iA~ka~~afgq------~VcGfDLL 234 (993)
+|+-|..+..- ..+. -.+.||+.--|+.|=+.-. +-.|++++. +|+.+++++++. .+..++++
T Consensus 199 ~~~dg~~~~~l~~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~ 278 (435)
T PRK06395 199 AFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFM 278 (435)
T ss_pred EEEcCCeEEEecccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEE
Confidence 67766664221 1110 0113666555544333211 112776544 677788899993 45678999
Q ss_pred eeCCCcEEEecc
Q 001944 235 RCEGRSYVCDVN 246 (993)
Q Consensus 235 Rs~g~syV~DVN 246 (993)
-+.++|||+|+|
T Consensus 279 lt~~gp~ViE~n 290 (435)
T PRK06395 279 DTPNGVKVIEIN 290 (435)
T ss_pred EeCCCcEEEEEe
Confidence 999999999999
No 55
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.68 E-value=2.6e-07 Score=116.61 Aligned_cols=195 Identities=13% Similarity=0.194 Sum_probs=121.2
Q ss_pred cCEEeecccCCCChHHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 001944 16 CDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 94 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 94 (993)
+|.+|+-++.-.++ +...-++..+ |+.-++.++...+.||.+..++|++.|||+|++..+.. .++.
T Consensus 631 ~dgVI~~~g~~~~~-~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~s------------~ee~ 697 (1068)
T PRK12815 631 IKGVIVQFGGQTAI-NLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATD------------EEEA 697 (1068)
T ss_pred CCEEEEecCcHHHH-HHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeCC------------HHHH
Confidence 57777755544433 2222233333 56678999999999999999999999999999998865 2233
Q ss_pred eeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 001944 95 VEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 173 (993)
Q Consensus 95 i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVy 173 (993)
..+. ..+++|+|+||..|. -.+++|.+... ..++.++.. ...++.+|+||||...--+|-++
T Consensus 698 ~~~~-~~igyPvVVKP~~~~Gg~gv~iv~~~e---eL~~~l~~~-------------~s~~~~vlIeefI~G~E~~Vd~i 760 (1068)
T PRK12815 698 FAFA-KRIGYPVLIRPSYVIGGQGMAVVYDEP---ALEAYLAEN-------------ASQLYPILIDQFIDGKEYEVDAI 760 (1068)
T ss_pred HHHH-HhcCCCEEEEeCCCCCCCCEEEECCHH---HHHHHHHHh-------------hcCCCCEEEEEeecCceEEEEEE
Confidence 2211 235689999999875 22333333211 011222211 12456799999994333455555
Q ss_pred EECCcee-EE-EeeeCCCCCCeeeecCCCCcee---eeeeCCH----HHHHHHHHHHHHhC-CceeEEEEEeeCCCcEEE
Q 001944 174 TVGPEYA-HA-EARKSPVVDGVVMRNPDGKEVR---YPVLLTP----NEKQMAREVCIAFR-QAVCGFDLLRCEGRSYVC 243 (993)
Q Consensus 174 tVG~~~v-hA-e~RKSP~vDG~vrrN~~gke~r---~~v~Lt~----eEk~iA~ka~~afg-q~VcGfDLLRs~g~syV~ 243 (993)
.=|...+ .+ +.+.. ++..|.|... .|..|++ +-+++|.++++++| ..++.||++..++++||+
T Consensus 761 ~dg~~v~i~~i~e~~e-------~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~~~~yvi 833 (1068)
T PRK12815 761 SDGEDVTIPGIIEHIE-------QAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLANDEIYVL 833 (1068)
T ss_pred EcCCceEEeeEEEEee-------ccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEECCcEEEE
Confidence 5454432 22 22211 1223544432 2456775 45678899999998 447779999999999999
Q ss_pred eccC
Q 001944 244 DVNG 247 (993)
Q Consensus 244 DVNG 247 (993)
|||-
T Consensus 834 EiNp 837 (1068)
T PRK12815 834 EVNP 837 (1068)
T ss_pred EEeC
Confidence 9993
No 56
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.66 E-value=4.5e-08 Score=123.73 Aligned_cols=197 Identities=19% Similarity=0.219 Sum_probs=120.0
Q ss_pred CcCEEeecccCCCChH--HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEE-eccCCCcccccccc
Q 001944 15 ICDCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIE 90 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~--KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~-~r~~p~~~~~~~~e 90 (993)
.+|++++-| ||--+ ...+.++..+ +|+-++.+...++.||..+.+++.++|||+|+.... ..+
T Consensus 74 ~iDaI~PGy--GflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~----------- 140 (1143)
T TIGR01235 74 GVDAIHPGY--GFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPET----------- 140 (1143)
T ss_pred CCCEEEECC--CccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCC-----------
Confidence 378888754 44321 1223334434 677789999999999999999999999999986532 111
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc-------ccCcceEEeecc
Q 001944 91 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-------RREGSYIYEEFM 163 (993)
Q Consensus 91 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~-------r~~gsyIyEEFi 163 (993)
.++.... ...+++|+|+||..|. -|-|++ + +.|.+ ++..-+... -.++.+++||||
T Consensus 141 ~eea~~~-ae~iGyPvIVKP~~GG-----------GGrG~r-i---V~~~e-EL~~a~~~a~~ea~~~fg~~~vlIEefI 203 (1143)
T TIGR01235 141 MEEVLDF-AAAIGYPVIIKASWGG-----------GGRGMR-V---VRSEA-DVADAFQRAKSEAKAAFGNDEVYVEKLI 203 (1143)
T ss_pred HHHHHHH-HHHcCCCEEEEECCCC-----------CCCccE-E---eCCHH-HHHHHHHHHHHHHHHhcCCCcEEEEEcC
Confidence 1111111 1245789999999885 222332 2 22211 111000000 124678999999
Q ss_pred CCCCceeEEEEECCc---eeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEe
Q 001944 164 PTGGTDVKVYTVGPE---YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLR 235 (993)
Q Consensus 164 ~t~G~DIKVytVG~~---~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~----eEk~iA~ka~~afgq~-VcGfDLLR 235 (993)
. +++.|.|-++|+. ++|...|...+ -||+..--|..-...|++ +-.++|.++++++|.. ++.||++.
T Consensus 204 ~-g~reIeVqVlgD~~G~vv~l~eRdcsv----qrr~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlv 278 (1143)
T TIGR01235 204 E-RPRHIEVQLLGDKHGNVVHLFERDCSV----QRRHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLV 278 (1143)
T ss_pred C-CCeEEEEEEEEeCCCCEEEEEeccccc----cccCceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEE
Confidence 5 4678888888654 67777774421 122211112221124555 4567899999999954 66699998
Q ss_pred eC-CCcEEEecc
Q 001944 236 CE-GRSYVCDVN 246 (993)
Q Consensus 236 s~-g~syV~DVN 246 (993)
.. |++||+|||
T Consensus 279 d~dg~~yfIEVN 290 (1143)
T TIGR01235 279 DNDGKFYFIEVN 290 (1143)
T ss_pred eCCCcEEEEEee
Confidence 74 679999999
No 57
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.66 E-value=6.6e-08 Score=110.81 Aligned_cols=202 Identities=17% Similarity=0.216 Sum_probs=113.2
Q ss_pred CcCEEeecccCCCChHH--HHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccc
Q 001944 15 ICDCLIAFYSSGYPLEK--AESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 89 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~K--Ai~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~ 89 (993)
.||.++.-+ ||--+- ..+.++..+ ||+.++.++..+++||....++|+++|||+|++. ++..
T Consensus 74 ~id~I~pg~--g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~----------- 140 (449)
T TIGR00514 74 GADAIHPGY--GFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVED----------- 140 (449)
T ss_pred CCCEEEeCC--CccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCC-----------
Confidence 588888755 332111 123344444 5678999999999999999999999999998865 2322
Q ss_pred cccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce
Q 001944 90 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 169 (993)
Q Consensus 90 e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~D 169 (993)
.++..... ..+++|+|+||++|.. ...|+.-.+.- -....++.....+ .....++.+|+||||+. ++.
T Consensus 141 -~~e~~~~~-~~ig~PvvvKP~~g~g-s~Gv~~v~~~~-el~~~~~~~~~~~-------~~~~~~~~vlvEe~i~g-~~e 208 (449)
T TIGR00514 141 -EEENVRIA-KRIGYPVIIKATAGGG-GRGMRVVREPD-ELVKSISMTRAEA-------KAAFGNDGVYIEKYIEN-PRH 208 (449)
T ss_pred -HHHHHHHH-HHhCCCEEEEeCCCCC-CCccEEECCHH-HHHHHHHHHHHHH-------HHhCCCCCEEEEECCCC-CeE
Confidence 11111111 2356899999999861 11111111110 0111111110000 00013456999999953 555
Q ss_pred eEEEEEC---CceeEEEeeeCCCCCCeeeecCCCCceee--eeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEee-CC
Q 001944 170 VKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRY--PVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRC-EG 238 (993)
Q Consensus 170 IKVytVG---~~~vhAe~RKSP~vDG~vrrN~~gke~r~--~v~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs-~g 238 (993)
+-|-+++ ++.++...|-. .+.+. +.+-..+ +..|++ +-+++|.++++++|.. ++.||++.+ +|
T Consensus 209 ~~v~v~~d~~g~~~~~~~~~~-----~~~~~-~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~~g 282 (449)
T TIGR00514 209 VEIQVLADKYGNAIYLGERDC-----SIQRR-HQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKNG 282 (449)
T ss_pred EEEEEEEcCCCCEEEEecccc-----Cceec-ccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeCCC
Confidence 6665554 34444432211 01110 1111111 124555 4456789999999974 456999987 67
Q ss_pred CcEEEeccC
Q 001944 239 RSYVCDVNG 247 (993)
Q Consensus 239 ~syV~DVNG 247 (993)
++||+|||.
T Consensus 283 ~~~viEiNp 291 (449)
T TIGR00514 283 EFYFMEMNT 291 (449)
T ss_pred CEEEEEEEC
Confidence 789999994
No 58
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.59 E-value=9.7e-08 Score=120.97 Aligned_cols=200 Identities=20% Similarity=0.230 Sum_probs=117.1
Q ss_pred cCEEeecccCCCChH--HHHHHHhhc-CCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEE--EeccCCCcccccccc
Q 001944 16 CDCLIAFYSSGYPLE--KAESYATLR-KPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--VNREVPYQELDYFIE 90 (993)
Q Consensus 16 cD~LIsF~S~GFPL~--KAi~y~~lr-~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~--~~r~~p~~~~~~~~e 90 (993)
||.+++.| ||--+ ...+.++.. -+|+-++.+...+++||..+.++|.++|||+|+... +..
T Consensus 79 iDaI~Pgy--GflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s------------ 144 (1146)
T PRK12999 79 VDAIHPGY--GFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDD------------ 144 (1146)
T ss_pred CCEEEeCC--CccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCC------------
Confidence 78888855 44322 112222333 356779999999999999999999999999977654 322
Q ss_pred ccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce
Q 001944 91 EEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 169 (993)
Q Consensus 91 ~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~D 169 (993)
.++.... ...+++|+|+||..|. -.++.+...... ....|+... ++ . .....++.+++|+||+. ++.
T Consensus 145 ~eea~~~-a~~iGyPvVVKP~~GgGGrGv~vV~~~eE---L~~a~~~a~---~e-a---~~~fg~~~vlVEefI~g-~~~ 212 (1146)
T PRK12999 145 IEEALEF-AEEIGYPIMLKASAGGGGRGMRIVRSEEE---LEEAFERAK---RE-A---KAAFGNDEVYLEKYVEN-PRH 212 (1146)
T ss_pred HHHHHHH-HHHhCCCEEEEECCCCCCCCeEEeCCHHH---HHHHHHHHH---HH-H---HhhcCCCcEEEecCCCC-CeE
Confidence 1122221 1245789999999986 112221111100 111121110 00 0 00012567999999974 566
Q ss_pred eEEEEEC---CceeEEEeeeCCCCCCeeeecCCCC--ceeeeeeCCHH----HHHHHHHHHHHhCCcee-EEEEEeeC-C
Q 001944 170 VKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGK--EVRYPVLLTPN----EKQMAREVCIAFRQAVC-GFDLLRCE-G 238 (993)
Q Consensus 170 IKVytVG---~~~vhAe~RKSP~vDG~vrrN~~gk--e~r~~v~Lt~e----Ek~iA~ka~~afgq~Vc-GfDLLRs~-g 238 (993)
|-|-++| ++++|--.|-..+ .|| |.| |..-...|+++ -+++|.++++++|..-+ .||++.+. |
T Consensus 213 ieVqvl~D~~G~vv~l~erdcsv----qrr--~qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~dg 286 (1146)
T PRK12999 213 IEVQILGDKHGNVVHLYERDCSV----QRR--HQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDADG 286 (1146)
T ss_pred EEEEEEEECCCCEEEEEccccce----eec--CccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECCC
Confidence 7776665 3556655553321 222 222 22111256654 45589999999998644 49999874 4
Q ss_pred CcEEEeccC
Q 001944 239 RSYVCDVNG 247 (993)
Q Consensus 239 ~syV~DVNG 247 (993)
++|++|||.
T Consensus 287 ~~yfIEINp 295 (1146)
T PRK12999 287 NFYFIEVNP 295 (1146)
T ss_pred CEEEEEEEC
Confidence 799999994
No 59
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=98.58 E-value=2e-07 Score=97.11 Aligned_cols=168 Identities=25% Similarity=0.323 Sum_probs=104.6
Q ss_pred CCcchhhhhhhHHHHHHHHH-------hCCCCC-CCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCc
Q 001944 45 NELEPQHLLHDRRKVYEQLE-------KYGIPV-PRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDH 116 (993)
Q Consensus 45 Ndl~~q~ll~DR~~v~qiL~-------~~gIP~-P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedH 116 (993)
|+|.+.+.+.||--++..|. ....|. +.|.+-+ ..+.+.- -..|+|+|-=.+-
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypn-------------h~em~s~----~~fPvVvKvG~~h-- 61 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPN-------------HREMLSA----PRFPVVVKVGHAH-- 61 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESS-------------GGGGCS-----SSSSEEEEESS-S--
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCC-------------hhhhccC----CCCCEEEEEcccc--
Confidence 88999999999943333332 234443 2333322 2233321 1369999986665
Q ss_pred ceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcce-EEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeee
Q 001944 117 SIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSY-IYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM 195 (993)
Q Consensus 117 ni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsy-IyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~vDG~vr 195 (993)
.|-|- + |+.|....-|-.. .+....+| -.|-||.. --||||--||++| -|+.|+|. .|.|.
T Consensus 62 ---------~G~GK--v--kv~n~~~~qDi~s-ll~~~~~Y~T~EPfId~-kyDirvqkIG~~y-kA~~R~si--s~nWK 123 (203)
T PF02750_consen 62 ---------AGMGK--V--KVDNQQDFQDIAS-LLAITKDYATTEPFIDA-KYDIRVQKIGNNY-KAYMRTSI--SGNWK 123 (203)
T ss_dssp ---------TTTTE--E--EE-SHHHHHHHHH-HHHHHTS-EEEEE---E-EEEEEEEEETTEE-EEEEEEES--SSTSS
T ss_pred ---------CceeE--E--EEccHHHHHHHHH-HHHhcCceEEeeccccc-eeEEEEEEEcCeE-EEEEEccc--ccccc
Confidence 44443 2 4655553222111 22333344 56778855 6899999999998 89999995 89999
Q ss_pred ecCCCCceeeeeeCCHHHHHHHHHHHHHh-CCceeEEEEEeeC-CCcEEEeccCccc
Q 001944 196 RNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCE-GRSYVCDVNGWSF 250 (993)
Q Consensus 196 rN~~gke~r~~v~Lt~eEk~iA~ka~~af-gq~VcGfDLLRs~-g~syV~DVNGwSF 250 (993)
+|+ |-..-+.|.+|+..|...-.+++.| |++|||+|.|-+. |+-|++|||+-++
T Consensus 124 ~N~-gsa~lEqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds~m 179 (203)
T PF02750_consen 124 ANT-GSAMLEQIAMTERYKLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDSSM 179 (203)
T ss_dssp TTS-SSEEEEEE---HHHHHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-TT-
T ss_pred ccc-cchheeecCCChHHHHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCCcc
Confidence 997 5566778999999999999999999 9999999999994 6688999998654
No 60
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=98.58 E-value=6.2e-08 Score=101.04 Aligned_cols=159 Identities=21% Similarity=0.302 Sum_probs=98.8
Q ss_pred HHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccc-cCcceeEEeccCCCChHHHHHhhcCCC
Q 001944 62 QLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNR 140 (993)
Q Consensus 62 iL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~ 140 (993)
+|+.+|||||+++++.+..- ..+.+.-.-..++.|+|+||..+ +-.+|.+ -.+. ..|...+..
T Consensus 1 l~~~~gI~tp~~~~~~~~~~---------~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~--v~~~----~el~~ai~~- 64 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNED---------DSDSIEKILEDLGFPLFVKPASEGSSIGISK--VHNE----EELEEAIEK- 64 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSH---------HHHHHHHHHHHHSSSEEEEESSTSTTTTEEE--ESSH----HHHHHHHHH-
T ss_pred ChhhcCCCCCCEEEEecccc---------cchhHHHHHhhcCCCEEEEECCCCccEEEEE--cCCH----HHHHHHHHH-
Confidence 58899999999999988310 11112212235678999999986 3233322 2111 123222210
Q ss_pred cccccccccccccCcceEEeeccCCCCceeEEEEEC---CceeEEEeeeCCCCCCeeeec------CCCCceeeeeeCCH
Q 001944 141 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRN------PDGKEVRYPVLLTP 211 (993)
Q Consensus 141 sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVytVG---~~~vhAe~RKSP~vDG~vrrN------~~gke~r~~v~Lt~ 211 (993)
..+.+...|+|||| .|+++-|-++| ..+...++...+ ++.+.-+ ........|..|++
T Consensus 65 ---------~~~~~~~vlVEefI--~G~E~tv~vl~~~~~~~~~~~ei~~~--~~~~d~~~Ky~~~~~~~~~~~pa~l~~ 131 (203)
T PF07478_consen 65 ---------AFKYDDDVLVEEFI--SGREFTVGVLGNGEPRVLPPVEIVFP--SEFYDYEAKYQPADSETEYIIPADLSE 131 (203)
T ss_dssp ---------HTTTHSEEEEEE----SSEEEEEEEEESSSTEEEEEEEEEES--SSEEEHHHHHSGCCSCEEEESS-SS-H
T ss_pred ---------HhhhcceEEEEeee--cccceEEEEEecCCcccCceEEEEcC--CCceehhheeccCCCceEEEecCCCCH
Confidence 12346678999999 79999999999 666666666664 3333211 13334455666765
Q ss_pred ----HHHHHHHHHHHHhCC-ceeEEEEEee-CCCcEEEeccCcc
Q 001944 212 ----NEKQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVNGWS 249 (993)
Q Consensus 212 ----eEk~iA~ka~~afgq-~VcGfDLLRs-~g~syV~DVNGwS 249 (993)
+-+++|.+|.+++|. .+|=||+.-+ +|.+||+|||.-+
T Consensus 132 ~~~~~i~~~a~~a~~~lg~~~~~RiD~rv~~~g~~~~lEiNt~P 175 (203)
T PF07478_consen 132 ELQEKIKEIAKKAFKALGCRGYARIDFRVDEDGKPYFLEINTIP 175 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEEEEEEEETTTEEEEEEEESS-
T ss_pred HHHHHHHHHHHHHHHHHcCCCceeEEEEeccCCceEEEeccCcc
Confidence 456789999999997 8999999877 6779999999653
No 61
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.57 E-value=4.3e-07 Score=111.56 Aligned_cols=207 Identities=16% Similarity=0.220 Sum_probs=127.0
Q ss_pred cCEEeecccCCCChH-HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 16 CDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 16 cD~LIsF~S~GFPL~-KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
+|+...-.--++--| ....++++.+ ||+=.+..+..++.||..+-++|+++|||||++..+.+..-. .+.+.
T Consensus 527 ~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~~~~~~~~------~~~~~ 600 (809)
T PRK14573 527 VDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGWK------REPEL 600 (809)
T ss_pred CCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhcc------cChHH
Confidence 566554432223333 5677888888 667779999999999999999999999999999888652100 00011
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEE
Q 001944 94 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKV 172 (993)
Q Consensus 94 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DIKV 172 (993)
.+.-.-..+++|+|+||..+- .+.|+. ++.|.+. +..-+. ....+..+|+|||+.. |+.+-|
T Consensus 601 ~~~~~~~~lg~P~iVKP~~~G-----------sS~Gv~----~v~~~~e-l~~a~~~a~~~~~~vlVEe~i~~-grEi~v 663 (809)
T PRK14573 601 CLAHIVEAFSFPMFVKTAHLG-----------SSIGVF----EVHNVEE-LRDKISEAFLYDTDVFVEESRLG-SREIEV 663 (809)
T ss_pred HHHHHHHhcCCCEEEeeCCCC-----------CCCCEE----EECCHHH-HHHHHHHHHhcCCcEEEEeccCC-CEEEEE
Confidence 111011246789999999974 222332 1222211 111111 1123566899999863 899999
Q ss_pred EEECCce---eEE--EeeeCCCCCCe--eeecC--CCC---ceeeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEe
Q 001944 173 YTVGPEY---AHA--EARKSPVVDGV--VMRNP--DGK---EVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLR 235 (993)
Q Consensus 173 ytVG~~~---vhA--e~RKSP~vDG~--vrrN~--~gk---e~r~~v~Lt~----eEk~iA~ka~~afgq-~VcGfDLLR 235 (993)
-++|+.- +.+ ..+... .+. +..+- +|+ .+.+|..|++ +-+++|.++.+++|. .+|.||++-
T Consensus 664 ~vl~~~~~~~~~~~~~e~~~~--~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v 741 (809)
T PRK14573 664 SCLGDGSSAYVIAGPHERRGS--GGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCRIDFFL 741 (809)
T ss_pred EEEeCCCCceEeccceEEccC--CCeeCchhcccCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEE
Confidence 9998752 111 222221 121 11222 233 2335667775 456788999999995 477899998
Q ss_pred e-CCCcEEEeccC
Q 001944 236 C-EGRSYVCDVNG 247 (993)
Q Consensus 236 s-~g~syV~DVNG 247 (993)
. +|.+||+|||-
T Consensus 742 ~~~g~~yv~EiNt 754 (809)
T PRK14573 742 DEEGNFWLSEMNP 754 (809)
T ss_pred cCCCCEEEEEeeC
Confidence 7 46799999993
No 62
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.55 E-value=3.2e-07 Score=105.78 Aligned_cols=195 Identities=17% Similarity=0.191 Sum_probs=113.7
Q ss_pred CCCh-HHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeecc
Q 001944 26 GYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFW 103 (993)
Q Consensus 26 GFPL-~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~ 103 (993)
-+|| ....++++..+ |+.-.+..+..+++||..+-++|+++|||||++..+... . +...++. .++
T Consensus 71 E~~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~--~-------e~~~~~~----~~g 137 (434)
T PLN02257 71 EAPLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDP--A-------AAKKYIK----EQG 137 (434)
T ss_pred chHHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH--H-------HHHHHHH----HcC
Confidence 3666 45556666664 445588889999999999999999999999998877441 0 1112221 346
Q ss_pred CcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCccccccccccc-ccCcceEEeeccCCCCceeEEEEE-CC-ce
Q 001944 104 KPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPTGGTDVKVYTV-GP-EY 179 (993)
Q Consensus 104 kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~-r~~gsyIyEEFi~t~G~DIKVytV-G~-~~ 179 (993)
.|+|+||..+. -.+++|-..... ....++.+-.. + .. ..+..+|+||||. |+.+-|.++ ++ .+
T Consensus 138 ~PvVVKp~~~~~GkGV~iv~~~~e---l~~a~~~~~~~-~-------~fg~~~~~vlIEefi~--G~E~Sv~~~~dG~~~ 204 (434)
T PLN02257 138 APIVVKADGLAAGKGVVVAMTLEE---AYEAVDSMLVK-G-------AFGSAGSEVVVEEFLD--GEEASFFALVDGENA 204 (434)
T ss_pred CCEEEEcCCCCCCCCEEEECCHHH---HHHHHHHHHhh-h-------hccCCCCeEEEEECCC--CCEEEEEEEECCCcE
Confidence 79999999764 122222211110 01111111000 0 01 1245699999997 556666432 33 22
Q ss_pred eE-EEe-eeCCCCCCeeeecCCCCceeeeee-CCHHHHH-HHH-------HHHHHhCCceeE---EEEEee--CCCcEEE
Q 001944 180 AH-AEA-RKSPVVDGVVMRNPDGKEVRYPVL-LTPNEKQ-MAR-------EVCIAFRQAVCG---FDLLRC--EGRSYVC 243 (993)
Q Consensus 180 vh-Ae~-RKSP~vDG~vrrN~~gke~r~~v~-Lt~eEk~-iA~-------ka~~afgq~VcG---fDLLRs--~g~syV~ 243 (993)
.. .+. ....+.||+..-|+.|-+.-.|.. ++++..+ ++. ++.++.|..+.| +|++-+ +|++||+
T Consensus 205 ~pl~~~~dhkr~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~vL 284 (434)
T PLN02257 205 IPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLL 284 (434)
T ss_pred EEEEeeeecccccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEEE
Confidence 22 111 123456888888886555444442 7764443 333 333466776556 677665 4669999
Q ss_pred ecc
Q 001944 244 DVN 246 (993)
Q Consensus 244 DVN 246 (993)
|+|
T Consensus 285 E~N 287 (434)
T PLN02257 285 EYN 287 (434)
T ss_pred EEE
Confidence 999
No 63
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=98.53 E-value=1.9e-07 Score=108.05 Aligned_cols=205 Identities=17% Similarity=0.179 Sum_probs=117.1
Q ss_pred CcCEEeecccCCCChH--HHHHHHhhc-CCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccc
Q 001944 15 ICDCLIAFYSSGYPLE--KAESYATLR-KPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 89 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~--KAi~y~~lr-~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~ 89 (993)
.+|.+++-| ||--+ ...+.++.. -+|+-++.+...+++||..+.++|.++|||+|++. .+..
T Consensus 77 ~~daI~pg~--g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~----------- 143 (467)
T PRK12833 77 GADAIHPGY--GFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVAS----------- 143 (467)
T ss_pred CCCEEEECC--CccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCC-----------
Confidence 368888755 44221 112333333 46788999999999999999999999999998875 3322
Q ss_pred cccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce
Q 001944 90 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 169 (993)
Q Consensus 90 e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~D 169 (993)
.++.... ...+++|+|+||+.|. -...++.-.+.- .....|+... ++-. ..+ .++.+++|+||+. |+.
T Consensus 144 -~~e~~~~-~~~igyPvvvKp~~gg-gg~Gv~~v~~~~-eL~~a~~~~~---~~~~---~~~-~~~~vlvEefi~~-~~e 211 (467)
T PRK12833 144 -LDAALEV-AARIGYPLMIKAAAGG-GGRGIRVAHDAA-QLAAELPLAQ---REAQ---AAF-GDGGVYLERFIAR-ARH 211 (467)
T ss_pred -HHHHHHH-HHHhCCCEEEEECCCC-CCCeEEEECCHH-HHHHHHHHHH---HHHH---Hhc-CCCcEEEEecCCC-CEE
Confidence 1122121 1235789999999986 122222221110 0111121110 0000 011 2567899999976 678
Q ss_pred eEEEEECCc--eeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEee--CCCc
Q 001944 170 VKVYTVGPE--YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRC--EGRS 240 (993)
Q Consensus 170 IKVytVG~~--~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs--~g~s 240 (993)
|-|-++|+. ++|.-.|..- +. |++..--+..-+..|++ +-+++|.++++++|.. ++.||++.. +|++
T Consensus 212 i~v~v~~dg~~~~~~~~~~~~-~~---r~~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~ 287 (467)
T PRK12833 212 IEVQILGDGERVVHLFERECS-LQ---RRRQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEF 287 (467)
T ss_pred EEEEEEeCCCcEEEEEEeecc-cc---cCCccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCE
Confidence 888777763 4555444321 10 11100000010123554 5567899999999975 345898876 3668
Q ss_pred EEEeccCc
Q 001944 241 YVCDVNGW 248 (993)
Q Consensus 241 yV~DVNGw 248 (993)
||+|||.=
T Consensus 288 ~~iEvNpR 295 (467)
T PRK12833 288 YFIEMNTR 295 (467)
T ss_pred EEEEEECC
Confidence 99999953
No 64
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.50 E-value=3.2e-07 Score=98.81 Aligned_cols=167 Identities=23% Similarity=0.258 Sum_probs=123.7
Q ss_pred CcCE--EeecccCC--CChH-HHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccc
Q 001944 15 ICDC--LIAFYSSG--YPLE-KAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFI 89 (993)
Q Consensus 15 ~cD~--LIsF~S~G--FPL~-KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~ 89 (993)
.||+ +|+==++| +-|- ++-+|++..++ +..+.+++-|||++|..|..+ +++|.|...-. .
T Consensus 73 ~~Da~LvIAPEdd~lLy~Ltri~E~~~~nLG~----S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~~~-~--------- 137 (307)
T COG1821 73 KADATLVIAPEDDGLLYSLTRIYEEYVENLGC----SPRAIRVAADKRLTYKALRDA-VKQPPTREWAE-E--------- 137 (307)
T ss_pred cCCeeEEEecCcCChHHHHHHHHHHHhHhhCC----CHHHHhHhhhHHHHHHHHhhh-ccCCCcccccc-C---------
Confidence 4664 34444455 3344 35667776654 568999999999999999999 99999985311 1
Q ss_pred cccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC----
Q 001944 90 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---- 165 (993)
Q Consensus 90 e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t---- 165 (993)
.+-+|+||.+|. +|.|. +| +.-.| ++ .|-||||+-
T Consensus 138 -------------~~k~ViKp~dgC-----------gge~i--~~-------~~~~p-------d~-~i~qEfIeG~~lS 176 (307)
T COG1821 138 -------------PKKYVIKPADGC-----------GGEGI--LF-------GRDFP-------DI-EIAQEFIEGEHLS 176 (307)
T ss_pred -------------CceEEecccccC-----------Cccee--ec-------cCCCc-------ch-hhHHHhcCCcceE
Confidence 246999999997 44443 22 11122 22 789999974
Q ss_pred ----CCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhC--CceeEEEEEeeCCC
Q 001944 166 ----GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFR--QAVCGFDLLRCEGR 239 (993)
Q Consensus 166 ----~G~DIKVytVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~afg--q~VcGfDLLRs~g~ 239 (993)
.|++|.+.+|..+++.- +..+.--.||..+++.+|..+-.+.|+++.+-++ -...||||.-+ +.
T Consensus 177 VSL~~GEkv~pLsvNrQfi~~---------~~~~~~y~gg~~pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls-D~ 246 (307)
T COG1821 177 VSLSVGEKVLPLSVNRQFIIF---------AGSELVYNGGRTPIDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS-DE 246 (307)
T ss_pred EEEecCCccccceechhhhhh---------ccceeeeccCcCCCCcHHHHHHHHHHHHHHHhhccccceeeEEEEec-CC
Confidence 57888888887776432 3355666789999999999999999999999998 45789999999 99
Q ss_pred cEEEeccC
Q 001944 240 SYVCDVNG 247 (993)
Q Consensus 240 syV~DVNG 247 (993)
|||+|||-
T Consensus 247 pYvIEINp 254 (307)
T COG1821 247 PYVIEINP 254 (307)
T ss_pred cEEEEecC
Confidence 99999993
No 65
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=98.50 E-value=9.2e-07 Score=98.97 Aligned_cols=196 Identities=21% Similarity=0.255 Sum_probs=136.5
Q ss_pred cCEEeecccCCCChHHHHHHHhhcCCccc--CCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 16 CDCLIAFYSSGYPLEKAESYATLRKPFLV--NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi~y~~lr~p~~i--Ndl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
.|+++.-+..=+ |.+-.+-++..+.-++ =+.++..++.||.+.|+.++++|||+|.+..+..- ..|...-.
T Consensus 67 Idv~~P~~~~~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~------~el~~a~~ 139 (329)
T PF15632_consen 67 IDVFVPGRNREL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTA------DELKAAYE 139 (329)
T ss_pred CeEEEcCccHHH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCH------HHHHHHHH
Confidence 456665555445 6666666666665433 57889999999999999999999999999999662 11222222
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc------------ccCcceEEee
Q 001944 94 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV------------RREGSYIYEE 161 (993)
Q Consensus 94 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~------------r~~gsyIyEE 161 (993)
.+... ++|+.+||..|. -|-|.++|-+....-...+.|+...+ ..--.+|+.|
T Consensus 140 ~l~~~----~~~~CvKP~~g~-----------gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMe 204 (329)
T PF15632_consen 140 ELRFP----GQPLCVKPAVGI-----------GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVME 204 (329)
T ss_pred hcCCC----CceEEEecccCC-----------CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEec
Confidence 23333 368999999998 33343332222222223344333221 1456799999
Q ss_pred ccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCc-eeEEEEEe-eCCC
Q 001944 162 FMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLR-CEGR 239 (993)
Q Consensus 162 Fi~t~G~DIKVytVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~afgq~-VcGfDLLR-s~g~ 239 (993)
|++-.=--|=|..-++++++|-.|+= . +.+..+.-.++--++|.++|++||++ +.+|.+-. .+|+
T Consensus 205 yL~G~EySVD~l~~~G~viaaV~R~K---~----------G~~q~l~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g~ 271 (329)
T PF15632_consen 205 YLPGPEYSVDCLADEGRVIAAVPRRK---L----------GRRQVLENDEELIELARRLAEAFGLDGLFNIQFRYDEDGN 271 (329)
T ss_pred CCCCCeEEEEEEecCCEEEEEEEEEe---c----------CceeEEEECHHHHHHHHHHHHHhCCCceEEEEEEEcCCCC
Confidence 99985555556666789988888865 1 25667778899999999999999986 56899988 6889
Q ss_pred cEEEecc
Q 001944 240 SYVCDVN 246 (993)
Q Consensus 240 syV~DVN 246 (993)
|+++|+|
T Consensus 272 p~LLEIN 278 (329)
T PF15632_consen 272 PKLLEIN 278 (329)
T ss_pred EEEEEeC
Confidence 9999999
No 66
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=98.49 E-value=7.2e-07 Score=99.31 Aligned_cols=191 Identities=17% Similarity=0.208 Sum_probs=134.4
Q ss_pred HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 001944 31 KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 109 (993)
Q Consensus 31 KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 109 (993)
..+.|++..+ ||++..+..=.+.-|+..+-++++..|||++..+.+.++.+ .+..++-.-..++.|+++|
T Consensus 78 ~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~---------~~~~~e~~~~~l~~p~~Vk 148 (317)
T COG1181 78 TIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEY---------SSVIVEEVEEGLGFPLFVK 148 (317)
T ss_pred hHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeeecccc---------hhHHHHHhhcccCCCEEEE
Confidence 5677888888 99999999999999999999999999999999999988421 1111222223457999999
Q ss_pred eccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCC-
Q 001944 110 PVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSP- 188 (993)
Q Consensus 110 pv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP- 188 (993)
|...- --+.|.-.++.|-|- +..+ ...+.+...+.|+|+. |+.|.|=+.|... +++.-++
T Consensus 149 p~~~g-SSvg~~~v~~~~d~~-----------~~~e---~a~~~d~~vl~e~~~~--~rei~v~vl~~~~--~~~~l~~~ 209 (317)
T COG1181 149 PAREG-SSVGRSPVNVEGDLQ-----------SALE---LAFKYDRDVLREQGIT--GREIEVGVLGNDY--EEQALPLG 209 (317)
T ss_pred cCCcc-ceeeEEEeeeccchH-----------HHHH---HHHHhCCceeeccCCC--cceEEEEecCCcc--cceecCce
Confidence 98742 123333333333332 2111 0345788889999999 9999999999865 2222221
Q ss_pred -CC-CC-ee----eecCCCCceeeee--eCCH----HHHHHHHHHHHHhC-CceeEEEEEeeC--CCcEEEeccCcc
Q 001944 189 -VV-DG-VV----MRNPDGKEVRYPV--LLTP----NEKQMAREVCIAFR-QAVCGFDLLRCE--GRSYVCDVNGWS 249 (993)
Q Consensus 189 -~v-DG-~v----rrN~~gke~r~~v--~Lt~----eEk~iA~ka~~afg-q~VcGfDLLRs~--g~syV~DVNGwS 249 (993)
++ +| .| ..|+++|+..+.+ .||+ +-+++|.+|.+|+| ..+||+|++-.. |+.|++|||.-+
T Consensus 210 eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~P 286 (317)
T COG1181 210 EIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNP 286 (317)
T ss_pred EEecCCCeEEeeeccccCCCCceeeCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCC
Confidence 00 33 33 2678844433322 3665 56889999999999 999999999997 789999999543
No 67
>PLN02735 carbamoyl-phosphate synthase
Probab=98.48 E-value=1e-06 Score=111.64 Aligned_cols=197 Identities=13% Similarity=0.208 Sum_probs=121.5
Q ss_pred cCEEeecccCCCChHHHHHHHh---h----------cCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCC
Q 001944 16 CDCLIAFYSSGYPLEKAESYAT---L----------RKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPY 82 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi~y~~---l----------r~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~ 82 (993)
+|.+|.-|..-.||.=|..-.+ . .-+++..+.++..++.||.+..++|+++|||+|++..+..
T Consensus 650 ~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~~v~s---- 725 (1102)
T PLN02735 650 PDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARS---- 725 (1102)
T ss_pred CCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEeCC----
Confidence 6788877766666643322111 1 1246789999999999999999999999999999987754
Q ss_pred ccccccccccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEee
Q 001944 83 QELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEE 161 (993)
Q Consensus 83 ~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEE 161 (993)
.++...+ -..+++|+|+||..|. -.++.|-+.... ....++.. .....++.+|+|+
T Consensus 726 --------~eea~~~-a~~iGyPvvVKP~~g~gG~G~~iV~~~ee---L~~al~~a-----------~~~~~~~~vlVEe 782 (1102)
T PLN02735 726 --------EADALAI-AKRIGYPVVVRPSYVLGGRAMEIVYSDDK---LKTYLETA-----------VEVDPERPVLVDK 782 (1102)
T ss_pred --------HHHHHHH-HHhcCCCeEEEeCCCCCCCcEEEECCHHH---HHHHHHHH-----------HHhcCCCCEEEEE
Confidence 1222221 1246789999999864 122222222111 11111110 0112355799999
Q ss_pred ccCCCCceeEEEEECC---ceeE--EEeeeCCCCCCeeeecCCCCceeeee---eCCHHH----HHHHHHHHHHhCC-ce
Q 001944 162 FMPTGGTDVKVYTVGP---EYAH--AEARKSPVVDGVVMRNPDGKEVRYPV---LLTPNE----KQMAREVCIAFRQ-AV 228 (993)
Q Consensus 162 Fi~t~G~DIKVytVG~---~~vh--Ae~RKSP~vDG~vrrN~~gke~r~~v---~Lt~eE----k~iA~ka~~afgq-~V 228 (993)
||.. |+-|=|-++++ +++. .+.+.- +...|.|+....+ .|+++. +++|.++++++|. .+
T Consensus 783 fI~~-g~Ei~V~vl~D~~G~vv~~~i~e~~~-------~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G~ 854 (1102)
T PLN02735 783 YLSD-ATEIDVDALADSEGNVVIGGIMEHIE-------QAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCGL 854 (1102)
T ss_pred ecCC-cEEEEEEEEECCCCCEEEecceEeee-------ccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcce
Confidence 9953 67777776653 2221 122111 1223545444333 577544 5679999999985 57
Q ss_pred eEEEEEee-CCCcEEEeccC
Q 001944 229 CGFDLLRC-EGRSYVCDVNG 247 (993)
Q Consensus 229 cGfDLLRs-~g~syV~DVNG 247 (993)
+.+|++-+ +|++||+|||-
T Consensus 855 ~~vqf~v~~dg~~yviEiNp 874 (1102)
T PLN02735 855 MNCQYAITPSGEVYIIEANP 874 (1102)
T ss_pred eeEEEEEcCCCcEEEEEEeC
Confidence 78999985 67899999994
No 68
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.47 E-value=1.7e-06 Score=109.44 Aligned_cols=195 Identities=18% Similarity=0.227 Sum_probs=119.7
Q ss_pred CcCEEeecccCCCChHHHHH-----HHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 001944 15 ICDCLIAFYSSGYPLEKAES-----YATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 88 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~KAi~-----y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~ 88 (993)
..|++|+.+....+|.-++. .++..+ ++.-.+.+...+++||....+.|.++|||+|++..+...
T Consensus 82 ~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~--------- 152 (1066)
T PRK05294 82 RPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHSM--------- 152 (1066)
T ss_pred CcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeeeeCCH---------
Confidence 35888887665555654442 344555 456689999999999999999999999999999998651
Q ss_pred ccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc---ccccCcceEEeeccCC
Q 001944 89 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPT 165 (993)
Q Consensus 89 ~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~---~~r~~gsyIyEEFi~t 165 (993)
++.... -..+++|+|+||..|. .|-|+. + +.|... +..-.. .....+.+|+||||+-
T Consensus 153 ---~e~~~~-~~~ig~PvVVKP~~g~-----------gg~Gv~-i---v~~~ee-L~~a~~~~~~~s~~~~vlvEe~I~G 212 (1066)
T PRK05294 153 ---EEALEV-AEEIGYPVIIRPSFTL-----------GGTGGG-I---AYNEEE-LEEIVERGLDLSPVTEVLIEESLLG 212 (1066)
T ss_pred ---HHHHHH-HHHcCCCeEEEcCCCC-----------CCCCeE-E---ECCHHH-HHHHHHHHHhhCCCCeEEEEEcccC
Confidence 122111 1235689999999875 222321 1 222111 110000 1112467999999963
Q ss_pred CCceeEEEEECC---cee--EEEeeeCCCCCCeeeecCCCCcee--eee-eCCHHH----HHHHHHHHHHhCCc--eeEE
Q 001944 166 GGTDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPNE----KQMAREVCIAFRQA--VCGF 231 (993)
Q Consensus 166 ~G~DIKVytVG~---~~v--hAe~RKSP~vDG~vrrN~~gke~r--~~v-~Lt~eE----k~iA~ka~~afgq~--VcGf 231 (993)
. ..+-|-++.+ +.+ ..+.+..|. | .|.|++. .|. .|++++ +++|.++++++|.. +|.|
T Consensus 213 ~-~Eisv~v~rd~~g~~~~~~~~e~~dp~--g-----ih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~v 284 (1066)
T PRK05294 213 W-KEYEYEVMRDKNDNCIIVCSIENIDPM--G-----VHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNV 284 (1066)
T ss_pred c-eEEEEEEEEcCCCCEEEEeeeeecccc--c-----eecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEE
Confidence 1 3343433322 111 122333331 1 2434432 233 577643 58999999999997 9999
Q ss_pred EEEee-C-CCcEEEecc
Q 001944 232 DLLRC-E-GRSYVCDVN 246 (993)
Q Consensus 232 DLLRs-~-g~syV~DVN 246 (993)
|+.-+ . |+.||+|||
T Consensus 285 ef~~~~~~g~~~viEiN 301 (1066)
T PRK05294 285 QFALNPKDGRYIVIEMN 301 (1066)
T ss_pred EEEEECCCCcEEEEEee
Confidence 99987 3 568999999
No 69
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.44 E-value=6.6e-07 Score=104.48 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=105.1
Q ss_pred CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceee-ecCeeccCcEEEeecccc-Ccce
Q 001944 41 PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGD-DHSI 118 (993)
Q Consensus 41 p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~-v~g~~~~kPfVeKpv~Ge-dHni 118 (993)
||+.-+..+..++.||..+.++++++|||+|++.++..+. .++... +....++.|+|+||..|. -+++
T Consensus 128 py~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~----------~eel~~~~~~~~IGyPvVVKP~~GGSS~GV 197 (493)
T PRK06524 128 EVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDS----------YDELSALAHGAGLGDDLVVQTPYGDSGSTT 197 (493)
T ss_pred eEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCC----------HHHHHHHHHhccCCCcEEEEECCCCCCcCE
Confidence 5778999999999999999999999999999998863311 111111 111236789999999874 2333
Q ss_pred eEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE--EEEECC-ceeEEEeeeCCCCCCeee
Q 001944 119 MIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK--VYTVGP-EYAHAEARKSPVVDGVVM 195 (993)
Q Consensus 119 ~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIK--VytVG~-~~vhAe~RKSP~vDG~vr 195 (993)
++-..... ...++.+ .-....+++|+||. |.-+= |++-+. .+++...+. ++-..++.
T Consensus 198 ~~Vkn~eE---Le~a~~~--------------~~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~~e-~vg~~Ei~ 257 (493)
T PRK06524 198 FFVRGQRD---WDKYAGG--------------IVGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAMTS-LVGYPELT 257 (493)
T ss_pred EEeCCHHH---HHHHHHH--------------hcCCCCEEEEeccC--cEEEEEEEEEeCCCCEEeccccc-cccceEEE
Confidence 33332111 1111111 11124478899995 44432 243332 222211111 11000111
Q ss_pred ecCCCCc---eeeeeeCCH----HHHHHHHHHHHHhC----CceeEEEEEee--CCCcEEEecc
Q 001944 196 RNPDGKE---VRYPVLLTP----NEKQMAREVCIAFR----QAVCGFDLLRC--EGRSYVCDVN 246 (993)
Q Consensus 196 rN~~gke---~r~~v~Lt~----eEk~iA~ka~~afg----q~VcGfDLLRs--~g~syV~DVN 246 (993)
.-.++. ...|..|++ +-+++|.+++++++ ..+++||++.. +|+.|++|||
T Consensus 258 -~yr~G~~~~~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEIN 320 (493)
T PRK06524 258 -PYRGGWCGNDIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVN 320 (493)
T ss_pred -EccCCeEEEEEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEe
Confidence 011222 234777888 77789999999984 68899999998 4779999999
No 70
>PLN02735 carbamoyl-phosphate synthase
Probab=98.41 E-value=4.3e-06 Score=106.18 Aligned_cols=197 Identities=12% Similarity=0.136 Sum_probs=124.0
Q ss_pred CcCEEeecccCCCChHHHH-----HHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 001944 15 ICDCLIAFYSSGYPLEKAE-----SYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 88 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~KAi-----~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~ 88 (993)
.+|++|+-+..-.+|+=|+ ..++..+ |++-++..+..++.||...-++|.++|||+|++..+...
T Consensus 98 ~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~--------- 168 (1102)
T PLN02735 98 RPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATTL--------- 168 (1102)
T ss_pred CCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCeeEeCCH---------
Confidence 5799997665445565443 2234445 678899999999999999999999999999999888541
Q ss_pred ccccceeeecCeecc-CcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCC
Q 001944 89 IEEEDFVEVHGNRFW-KPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG 166 (993)
Q Consensus 89 ~e~~d~i~v~g~~~~-kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~ 166 (993)
++....- ..++ +|+|+||..|. ..+++|-+.... .+..++.. .....++.+|+||||.-
T Consensus 169 ---eea~~~~-~~iG~yPvVVKP~~~~GG~Gv~iv~n~eE---L~~a~~~a-----------~~~s~~~~VLVEe~I~G- 229 (1102)
T PLN02735 169 ---DECFEIA-EDIGEFPLIIRPAFTLGGTGGGIAYNKEE---FETICKAG-----------LAASITSQVLVEKSLLG- 229 (1102)
T ss_pred ---HHHHHHH-HHhCCCCEEEEeCCCCCCCceEEECCHHH---HHHHHHHH-----------HhcCCCCeEEEEEecCC-
Confidence 1111111 1244 89999999853 123333322111 11111110 01124667899999963
Q ss_pred CceeEEEEECC---ce--eEEEeeeCCCCCCeeeecCCCCcee--eee-eCCHH----HHHHHHHHHHHhCC--ceeEEE
Q 001944 167 GTDVKVYTVGP---EY--AHAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPN----EKQMAREVCIAFRQ--AVCGFD 232 (993)
Q Consensus 167 G~DIKVytVG~---~~--vhAe~RKSP~vDG~vrrN~~gke~r--~~v-~Lt~e----Ek~iA~ka~~afgq--~VcGfD 232 (993)
.+-+=|=++++ +. +-.+.+..| .| .|.|... .|. .|+++ -+++|.+|++++|. .+|.||
T Consensus 230 ~kE~ev~Vl~D~~g~~i~v~~ie~~dp--~g-----vh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVq 302 (1102)
T PLN02735 230 WKEYELEVMRDLADNVVIICSIENIDP--MG-----VHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQ 302 (1102)
T ss_pred CeEEEEEEEEcCCCCEEEEeeEEEEcC--Cc-----cccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEE
Confidence 24566666643 22 233444444 22 2334432 244 47764 44569999999997 699999
Q ss_pred EEee--CCCcEEEecc
Q 001944 233 LLRC--EGRSYVCDVN 246 (993)
Q Consensus 233 LLRs--~g~syV~DVN 246 (993)
+.-. +|..||+|||
T Consensus 303 f~l~~~~g~~~ViEVN 318 (1102)
T PLN02735 303 FAVNPVDGEVMIIEMN 318 (1102)
T ss_pred EEEECCCCcEEEEEec
Confidence 9876 4678999999
No 71
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.39 E-value=5.9e-06 Score=95.16 Aligned_cols=205 Identities=15% Similarity=0.162 Sum_probs=115.1
Q ss_pred cCEEeecccCCCChHHHH-HHHhhcCCccc-CCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 16 CDCLIAFYSSGYPLEKAE-SYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi-~y~~lr~p~~i-Ndl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
+|+.|....+ ||-..+ ..++..+..++ -+...-.+.+||..+-++|+++|||||++..+... .+..+
T Consensus 69 iD~Vv~g~E~--~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~---------~ea~~ 137 (426)
T PRK13789 69 FDLIVVGPED--PLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEY---------SSSLS 137 (426)
T ss_pred CCEEEECCch--HHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCH---------HHHHH
Confidence 6888864443 443333 33444543332 23445668899999999999999999998777441 01112
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 001944 94 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 172 (993)
Q Consensus 94 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKV 172 (993)
++. .++.|+|+||..+. -.+|+|...... ....++.+-.. +.|. ..+..+|+||||. |+-+=|
T Consensus 138 ~~~----~~~~PvVVKp~~~~~gkGV~vv~~~ee---l~~a~~~~~~~-~~~g------~~~~~vlIEEfl~--G~E~Sv 201 (426)
T PRK13789 138 YLE----SEMLPIVIKADGLAAGKGVTVATEKKM---AKRALKEIFKD-KKFG------QSGNQVVIEEFME--GQEASI 201 (426)
T ss_pred HHH----hcCCCEEEEeCCCCCCCcEEEECCHHH---HHHHHHHHHhh-cccc------CCCCeEEEEECcC--CeEEEE
Confidence 222 24679999999764 234443333221 11122211000 0010 1234789999997 455555
Q ss_pred EEEC--CceeE---EEeeeCCCCCCeeeecCCCCceeeeee-CCHHHH-----HHHHHHHHHh---C---CceeEEEEEe
Q 001944 173 YTVG--PEYAH---AEARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAF---R---QAVCGFDLLR 235 (993)
Q Consensus 173 ytVG--~~~vh---Ae~RKSP~vDG~vrrN~~gke~r~~v~-Lt~eEk-----~iA~ka~~af---g---q~VcGfDLLR 235 (993)
.++. ..+.. +...| ...||+-.-|+.|=+.-.|.. ++++.. +|+.++.+++ | ..+..+|++-
T Consensus 202 ~~~~dg~~~~~lp~~~d~k-~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~i 280 (426)
T PRK13789 202 FAISDGDSYFLLPAAQDHK-RAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMI 280 (426)
T ss_pred EEEECCCEEEEccceEecc-cccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEE
Confidence 4443 32221 11111 123666666766666656665 465322 3455556555 5 4567789888
Q ss_pred eCCC-cEEEeccCc
Q 001944 236 CEGR-SYVCDVNGW 248 (993)
Q Consensus 236 s~g~-syV~DVNGw 248 (993)
+.++ +||+|+|--
T Consensus 281 t~~g~~~vlE~n~R 294 (426)
T PRK13789 281 SPEGEPKVVEFNCR 294 (426)
T ss_pred cCCCCEEEEEEecC
Confidence 8665 999999954
No 72
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.28 E-value=1e-05 Score=102.39 Aligned_cols=196 Identities=17% Similarity=0.203 Sum_probs=119.5
Q ss_pred CcCEEeecccCCCChHHHH-----HHHhhcCC-cccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 001944 15 ICDCLIAFYSSGYPLEKAE-----SYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 88 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~KAi-----~y~~lr~p-~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~ 88 (993)
.+|.+|+.+....+|.=|+ .-++..+. ++-.+.++..+++||.+..+.|.++|||+|++..+...
T Consensus 81 ~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~s~--------- 151 (1050)
T TIGR01369 81 RPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAHSV--------- 151 (1050)
T ss_pred CCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecCCH---------
Confidence 4689998776445554332 24555554 55689999999999999999999999999999888551
Q ss_pred ccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-cc--ccCcceEEeeccCC
Q 001944 89 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RV--RREGSYIYEEFMPT 165 (993)
Q Consensus 89 ~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~--r~~gsyIyEEFi~t 165 (993)
++.... ...+++|+|+||..|. .|-|+. .+.|... +..-+. .. ...+.+|+||||+-
T Consensus 152 ---~e~~~~-~~~igyPvIVKP~~g~-----------gg~Gv~----iv~~~ee-L~~~~~~~~~~s~~~~vlVEe~I~G 211 (1050)
T TIGR01369 152 ---EEALAA-AKEIGYPVIVRPAFTL-----------GGTGGG----IAYNREE-LKEIAERALSASPINQVLVEKSLAG 211 (1050)
T ss_pred ---HHHHHH-HHHhCCCeEEECCCCC-----------CCCCeE----EECCHHH-HHHHHHHHHhcCCCCcEEEEEcccC
Confidence 122221 1245689999999875 222332 1222221 110000 01 12357899999973
Q ss_pred CCceeEEEEECC---cee--EEEeeeCCCCCCeeeecCCCCce--eeee-eCCHHH----HHHHHHHHHHhCCc-eeEEE
Q 001944 166 GGTDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEV--RYPV-LLTPNE----KQMAREVCIAFRQA-VCGFD 232 (993)
Q Consensus 166 ~G~DIKVytVG~---~~v--hAe~RKSP~vDG~vrrN~~gke~--r~~v-~Lt~eE----k~iA~ka~~afgq~-VcGfD 232 (993)
...+=|-++++ +.+ ..+.+.-| .| .|-|++ -.|. .|++++ +++|.++++++|.. +|.||
T Consensus 212 -~~Eiev~v~rd~~g~~~~~~~~e~~~p--~g-----vh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Ve 283 (1050)
T TIGR01369 212 -WKEIEYEVMRDSNDNCITVCNMENFDP--MG-----VHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQ 283 (1050)
T ss_pred -ceEEEEEEEEeCCCCEEEEeeceeccC--cc-----eecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEE
Confidence 13343433322 222 22334334 22 232332 2243 377654 46889999999974 78899
Q ss_pred EEee--CCCcEEEeccC
Q 001944 233 LLRC--EGRSYVCDVNG 247 (993)
Q Consensus 233 LLRs--~g~syV~DVNG 247 (993)
+... +|+.||+|||.
T Consensus 284 f~l~~~~g~~~viEiNP 300 (1050)
T TIGR01369 284 FALNPDSGRYYVIEVNP 300 (1050)
T ss_pred EEEECCCCcEEEEEeec
Confidence 9887 36789999993
No 73
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.24 E-value=7.9e-06 Score=104.53 Aligned_cols=202 Identities=17% Similarity=0.191 Sum_probs=115.9
Q ss_pred cCEEeecccCCCChH--HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCC-EEEEeccCCCccccccccc
Q 001944 16 CDCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPR-YALVNREVPYQELDYFIEE 91 (993)
Q Consensus 16 cD~LIsF~S~GFPL~--KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~-t~~~~r~~p~~~~~~~~e~ 91 (993)
+|.+|..| ||--+ ...+.++..+ +|+-++.+...++.||....++|+++|||+|. +.++.. .
T Consensus 74 idaIiPG~--gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~lv~s------------~ 139 (1201)
T TIGR02712 74 AQAIHPGY--GFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLSS------------L 139 (1201)
T ss_pred CCEEEeCC--cccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeecCC------------H
Confidence 56677654 33221 2344555555 56778999999999999999999999999865 544433 1
Q ss_pred cceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCcee
Q 001944 92 EDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 170 (993)
Q Consensus 92 ~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DI 170 (993)
++.... -..+++|+|+||..|. -.++.+..... -....|+.+.+.+..+ . .+..+|+||||.. |+-|
T Consensus 140 dea~~~-a~~igyPvVVKP~~ggGG~GV~iv~~~e---EL~~a~~~~~~~~~~~------f-~~~~vlVEefI~g-~~ev 207 (1201)
T TIGR02712 140 DEALEA-AKEIGYPVMLKSTAGGGGIGMQKCDSAA---ELAEAFETVKRLGESF------F-GDAGVFLERFVEN-ARHV 207 (1201)
T ss_pred HHHHHH-HHhcCCeEEEEECCCCCCCCEEEECCHH---HHHHHHHHHHHHHHHh------c-CCCcEEEEecCCC-CEEE
Confidence 122221 1235689999999985 12233222211 1222333321111000 0 1345899999974 5667
Q ss_pred EEEEECC---ceeEEEeeeCCCCCCeee-ecCCCCceeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEeeC--CC
Q 001944 171 KVYTVGP---EYAHAEARKSPVVDGVVM-RNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE--GR 239 (993)
Q Consensus 171 KVytVG~---~~vhAe~RKSP~vDG~vr-rN~~gke~r~~v~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs~--g~ 239 (993)
-|.++|+ .+++--.|.. .+. +|..--+..-+..|++ +-.++|.++++++|.. ++.||++-.. ++
T Consensus 208 eV~v~~Dg~g~vv~lg~rd~-----s~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~ 282 (1201)
T TIGR02712 208 EVQIFGDGKGKVVALGERDC-----SLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDE 282 (1201)
T ss_pred EEEEEECCCCeEEEeeEEEe-----eeEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCC
Confidence 7766653 3444333321 121 2211111110112443 4566888999998864 7779999864 77
Q ss_pred cEEEeccCc
Q 001944 240 SYVCDVNGW 248 (993)
Q Consensus 240 syV~DVNGw 248 (993)
+||+|||.=
T Consensus 283 ~y~lEVNpR 291 (1201)
T TIGR02712 283 FYFLEVNTR 291 (1201)
T ss_pred EEEEEEECC
Confidence 999999953
No 74
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.17 E-value=6.3e-06 Score=89.26 Aligned_cols=193 Identities=19% Similarity=0.240 Sum_probs=119.2
Q ss_pred hcCCcccCCcchhhhhhhHHHHHHHHHhCC-CC--CCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc
Q 001944 38 LRKPFLVNELEPQHLLHDRRKVYEQLEKYG-IP--VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 114 (993)
Q Consensus 38 lr~p~~iNdl~~q~ll~DR~~v~qiL~~~g-IP--~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge 114 (993)
.++....|. -+.|||.+|+.|.+.. +. .|.|...... . .....+.-. +-+.+||..|+
T Consensus 6 ~~~i~~~n~-----~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~--~-------~l~~~L~~y-----~~vylKP~~Gs 66 (262)
T PF14398_consen 6 QKGIPFFNP-----GFFDKWEVYKALSRDPELRPYLPETELLTSF--E-------DLREMLNKY-----KSVYLKPDNGS 66 (262)
T ss_pred cCCCEEeCC-----CCCCHHHHHHHHHcCCcchhhCCCceEcCCH--H-------HHHHHHHHC-----CEEEEEeCCCC
Confidence 344556665 3579999999999863 44 7888777541 0 112223212 35889999998
Q ss_pred CcceeEEeccCCCChHHHHHhhcCC-Cccccc------ccccccccCcceEEeeccCC---CC--ceeEEEEEC--C---
Q 001944 115 DHSIMIYYPSSAGGGMKELFRKVGN-RSSEFH------PDVRRVRREGSYIYEEFMPT---GG--TDVKVYTVG--P--- 177 (993)
Q Consensus 115 dHni~IYyp~~~GgG~~rLfrkign-~sS~~~------p~~~~~r~~gsyIyEEFi~t---~G--~DIKVytVG--~--- 177 (993)
.+..|+.=...++|..--++.-+. ....|. .-+...-....||+|+.|+- +| -|+||++-= .
T Consensus 67 -~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W 145 (262)
T PF14398_consen 67 -KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKW 145 (262)
T ss_pred -CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCE
Confidence 444444444443332111111110 000111 00111235679999999976 55 899999982 2
Q ss_pred ceeEEEeeeCCCCCCeeeecCCCCceeeeee-----------CCHHHHHHHH----HHHHHhCC--ceeEEEEEee-CCC
Q 001944 178 EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-----------LTPNEKQMAR----EVCIAFRQ--AVCGFDLLRC-EGR 239 (993)
Q Consensus 178 ~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~-----------Lt~eEk~iA~----ka~~afgq--~VcGfDLLRs-~g~ 239 (993)
.+....+|.++ .|.+-+|.++|+...++. +..+-+++|. .+.+.||. .-.|+||--. +|+
T Consensus 146 ~vtg~~~Rva~--~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~ 223 (262)
T PF14398_consen 146 QVTGIVARVAK--PGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGK 223 (262)
T ss_pred EEEEEEEEEcC--CCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCC
Confidence 57789999998 899999999888765541 2222334444 44455674 6789999888 677
Q ss_pred cEEEeccCccccc
Q 001944 240 SYVCDVNGWSFVK 252 (993)
Q Consensus 240 syV~DVNGwSFVK 252 (993)
.+++|||.-+-..
T Consensus 224 iWliEvN~kP~~~ 236 (262)
T PF14398_consen 224 IWLIEVNSKPGKF 236 (262)
T ss_pred EEEEEEeCCCCcc
Confidence 8899999865443
No 75
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.12 E-value=3.3e-05 Score=98.06 Aligned_cols=206 Identities=17% Similarity=0.170 Sum_probs=119.7
Q ss_pred CcCEEeecccCCCChHHHHH-----HHhhcCC-cccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 001944 15 ICDCLIAFYSSGYPLEKAES-----YATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 88 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~KAi~-----y~~lr~p-~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~ 88 (993)
..|.+|..+....+|.-|++ .++..+. +.-.+.++..+++||....+.|.++|||+|++..+...
T Consensus 82 ~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v~s~--------- 152 (1068)
T PRK12815 82 KPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIVTSV--------- 152 (1068)
T ss_pred CcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceeeCCH---------
Confidence 46888876543344544432 3455553 45578999999999999999999999999999988651
Q ss_pred ccccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCC
Q 001944 89 IEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 167 (993)
Q Consensus 89 ~e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G 167 (993)
++.... -..+++|+|+||..|. ..++++...... ...+++..- .....+.+|+||||+- .
T Consensus 153 ---ee~~~~-~~~igyPvVVKP~~g~gG~Gv~iv~~~eE---L~~a~~~~~-----------~~s~~~~vLVEe~I~G-~ 213 (1068)
T PRK12815 153 ---EEALAF-AEKIGFPIIVRPAYTLGGTGGGIAENLEE---LEQLFKQGL-----------QASPIHQCLLEESIAG-W 213 (1068)
T ss_pred ---HHHHHH-HHHcCCCEEEEECcCCCCCceEEECCHHH---HHHHHHHHH-----------hcCCCCeEEEEEccCC-C
Confidence 121111 1235689999999874 122222221110 111111100 0112457999999963 1
Q ss_pred ceeEEEEECC---cee--EEEeeeCCCCCCeeeecCCCCcee--eee-eCCHH----HHHHHHHHHHHhCC-ceeEEEEE
Q 001944 168 TDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPN----EKQMAREVCIAFRQ-AVCGFDLL 234 (993)
Q Consensus 168 ~DIKVytVG~---~~v--hAe~RKSP~vDG~vrrN~~gke~r--~~v-~Lt~e----Ek~iA~ka~~afgq-~VcGfDLL 234 (993)
..+=|-++.+ +.+ .++.+..| .| .|.|... .|. .|+++ -+++|.++++++|. .+|.||+.
T Consensus 214 ~E~sv~v~rD~~g~~~~~~~~e~~~p--~g-----i~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~ 286 (1068)
T PRK12815 214 KEIEYEVMRDRNGNCITVCNMENIDP--VG-----IHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFA 286 (1068)
T ss_pred eEEEEEEEEcCCCCEEEEEeceeccc--cc-----ccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEE
Confidence 3444444432 222 22223233 22 1222221 233 47765 46788999999998 57889988
Q ss_pred eeC--CCcEEEeccCcccccccccc
Q 001944 235 RCE--GRSYVCDVNGWSFVKNSYKY 257 (993)
Q Consensus 235 Rs~--g~syV~DVNGwSFVK~n~kY 257 (993)
-.. |++||+||| +=+-++..+
T Consensus 287 l~~~~g~~~ViEIN--PR~~~s~~l 309 (1068)
T PRK12815 287 LDPKSKQYYLIEVN--PRVSRSSAL 309 (1068)
T ss_pred EECCCCcEEEEEEe--cCcccchhh
Confidence 763 569999999 333344444
No 76
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.04 E-value=2.6e-05 Score=91.51 Aligned_cols=200 Identities=15% Similarity=0.096 Sum_probs=113.0
Q ss_pred cCEEeecccCCCChH-HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCC-EEEEeccCCCcccccccccc
Q 001944 16 CDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPR-YALVNREVPYQELDYFIEEE 92 (993)
Q Consensus 16 cD~LIsF~S~GFPL~-KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~-t~~~~r~~p~~~~~~~~e~~ 92 (993)
+|+.|....+ ||- .....++..+ |+.-++..+-.+++||..+-++|+++|||+|. +..+.. .+
T Consensus 70 id~Vi~g~E~--~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~------------~~ 135 (486)
T PRK05784 70 PDLVVIGPEE--PLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVFYD------------VE 135 (486)
T ss_pred CCEEEECCch--HHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEeCC------------HH
Confidence 5888876555 443 2223344444 34458889999999999999999999999974 544432 11
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcc----cc-cc------cc----ccc-ccCcc
Q 001944 93 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSS----EF-HP------DV----RRV-RREGS 156 (993)
Q Consensus 93 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS----~~-~p------~~----~~~-r~~gs 156 (993)
+.+..- ..+ .|+|+||..+. .|-|+. .+.+... .+ ++ +. ... ..+..
T Consensus 136 ea~~~~-~~~-~PvVVKP~~~a-----------ggkGV~----iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~ 198 (486)
T PRK05784 136 EAAKFI-EYG-GSVAIKPARQA-----------GGKGVK----VIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPK 198 (486)
T ss_pred HHHHHH-hhc-CCEEEeeCCCC-----------CCCCEE----EECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCe
Confidence 222211 112 49999999886 444443 2222220 00 00 00 011 13567
Q ss_pred eEEeeccCCCCceeEEEEECCcee-EEEeeeC-CCCCCeeeecCCCCceeee----ee-CCHHH----HHHHHHHHHHhC
Q 001944 157 YIYEEFMPTGGTDVKVYTVGPEYA-HAEARKS-PVVDGVVMRNPDGKEVRYP----VL-LTPNE----KQMAREVCIAFR 225 (993)
Q Consensus 157 yIyEEFi~t~G~DIKVytVG~~~v-hAe~RKS-P~vDG~vrrN~~gke~r~~----v~-Lt~eE----k~iA~ka~~afg 225 (993)
+|.||||.-.=-.|=+++-|..+. -...+.- .+.+|+.--|+.|=+.-.| +. +++++ .+++.++..+++
T Consensus 199 VlIEEfL~G~E~SV~al~dG~~~~~l~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~ 278 (486)
T PRK05784 199 ILVEEKVDGVEYTLQVLTDGETVIPLPLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIY 278 (486)
T ss_pred EEEEEccCCeEEEEEEEECCCeEEEeeeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999983223344444344332 1112211 1236666666666444333 22 34432 345777777776
Q ss_pred Cc-------eeEEEEEee-CCCcEEEecc
Q 001944 226 QA-------VCGFDLLRC-EGRSYVCDVN 246 (993)
Q Consensus 226 q~-------VcGfDLLRs-~g~syV~DVN 246 (993)
.. ++-++++-+ .++|+|+|+|
T Consensus 279 ~~~g~~~~G~l~~elmlt~~~GP~vIE~n 307 (486)
T PRK05784 279 KETGERYVGVISGQMMLTELWGPTVIEYY 307 (486)
T ss_pred HhcCCCcEEEEEEEEEEecCCCcEEEEEe
Confidence 43 445688888 8999999999
No 77
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.77 E-value=0.00091 Score=76.15 Aligned_cols=179 Identities=18% Similarity=0.215 Sum_probs=101.3
Q ss_pred hcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcc
Q 001944 38 LRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHS 117 (993)
Q Consensus 38 lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHn 117 (993)
+.-|+. -+..+..+..||.+..+.|+++|||+|+++ .. + ++ +..|+|+||..|.+ +
T Consensus 107 ~~~p~~-gn~~~l~~e~dK~~~k~~L~~aGIp~p~~~--~~--~----------~~--------i~~PvIVKp~~g~g-g 162 (358)
T PRK13278 107 FKVPMF-GNREILRWEADRDKERKLLEEAGIRIPRKY--ES--P----------ED--------IDRPVIVKLPGAKG-G 162 (358)
T ss_pred CCCCcC-CCHHHHHHhcCHHHHHHHHHHcCCCCCCEe--CC--H----------HH--------cCCCEEEEeCCCCC-C
Confidence 444432 355678899999999999999999999962 11 1 11 23699999988863 3
Q ss_pred eeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEE---CCceeEEEeeeCCC-CCCe
Q 001944 118 IMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV---GPEYAHAEARKSPV-VDGV 193 (993)
Q Consensus 118 i~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVytV---G~~~vhAe~RKSP~-vDG~ 193 (993)
-.++...+.. -....++.+-++. . +.....+|.||||.-.--.+=+|+. |.-...++.|+=-. .||.
T Consensus 163 kGv~i~~s~~-El~~~~~~l~~~~-~-------~~~~~~~iIEEfI~G~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~ 233 (358)
T PRK13278 163 RGYFIAKSPE-EFKEKIDKLIERG-L-------ITEVEEAIIQEYVVGVPYYFHYFYSPIKNRLELLGIDRRYESNIDGL 233 (358)
T ss_pred CCeEEeCCHH-HHHHHHHHHHhcc-c-------cCCCCeEEEEecCCCcEEEEEEEEeccCCeEEEEeeceeeeecccce
Confidence 3444443321 1222333221110 1 1125779999999742223335543 55455666555433 4666
Q ss_pred eee--c---CCCCceeeee------eCC----HHHHHHHHHHHHH----h-CCcee--EEEEEeeCC-CcEEEeccCcc
Q 001944 194 VMR--N---PDGKEVRYPV------LLT----PNEKQMAREVCIA----F-RQAVC--GFDLLRCEG-RSYVCDVNGWS 249 (993)
Q Consensus 194 vrr--N---~~gke~r~~v------~Lt----~eEk~iA~ka~~a----f-gq~Vc--GfDLLRs~g-~syV~DVNGwS 249 (993)
+|- + ..+.+-.+++ .+. ++-.+++.+++++ + +..+| .+|...+.+ ..||+|||+=-
T Consensus 234 ~r~p~~~~~~~~~~p~~v~~Gn~P~~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~V~Eis~R~ 312 (358)
T PRK13278 234 VRIPAKDQLELGIDPTYVVVGNIPVVLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIVVFEISARI 312 (358)
T ss_pred eeccchhhhhcccCCceeEecceeccchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEEEEEEeCcc
Confidence 661 1 1122222222 222 4555667777776 5 55444 566677644 56999998754
No 78
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=97.45 E-value=3.2e-05 Score=81.70 Aligned_cols=164 Identities=21% Similarity=0.317 Sum_probs=93.8
Q ss_pred hHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHH
Q 001944 55 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELF 134 (993)
Q Consensus 55 DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLf 134 (993)
||..+.+++++.|||+|+....--+ ..++.+.+ -+.+++|+++||..|- -|-|+ +++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~----------~~eea~~~-a~~iGyPVliKas~gg-----------GG~gm-~iv 57 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPIS----------SVEEALEF-AEEIGYPVLIKASAGG-----------GGRGM-RIV 57 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBS----------SHHHHHHH-HHHH-SSEEEEETTSS-----------TTTSE-EEE
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCC----------CHHHHHHH-HHhcCCceEEeecccc-----------ccccc-ccc
Confidence 7999999999999999987765111 12333332 2346799999999875 22232 233
Q ss_pred hhcCCCcccccccccccc----cCcceEEeeccCC-CCceeEEEEECC-ceeEEEeeeCCCCCCeeeecCCCC--ceeee
Q 001944 135 RKVGNRSSEFHPDVRRVR----REGSYIYEEFMPT-GGTDVKVYTVGP-EYAHAEARKSPVVDGVVMRNPDGK--EVRYP 206 (993)
Q Consensus 135 rkign~sS~~~p~~~~~r----~~gsyIyEEFi~t-~G~DIKVytVG~-~~vhAe~RKSP~vDG~vrrN~~gk--e~r~~ 206 (993)
.....-.+.+.... ... .++.+++|+|+.. .--+|-|..=|- +++|.-.|..- ..| -+|+ ++.=+
T Consensus 58 ~~~~eL~~~~~~~~-~~s~~~fg~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~-----~~~-hs~dsi~~~P~ 130 (211)
T PF02786_consen 58 HNEEELEEAFERAQ-RESPAAFGDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECS-----EQR-HSQDSIEEAPA 130 (211)
T ss_dssp SSHHHHHHHHHHHH-HHHHHHHSTS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEE-----EEE-TTEEEEEEES-
T ss_pred cchhhhhhhhhhcc-ccCccccccceEEEeeehhhhhhhhhhhhhccccceeeeeeeccc-----ccc-ccccceeEeec
Confidence 32211111111000 001 2788999999986 434444433322 45666666552 233 2233 34434
Q ss_pred eeCCHHHH----HHHHHHHHHhCC-ceeEEEEEee--CCCcEEEeccCc
Q 001944 207 VLLTPNEK----QMAREVCIAFRQ-AVCGFDLLRC--EGRSYVCDVNGW 248 (993)
Q Consensus 207 v~Lt~eEk----~iA~ka~~afgq-~VcGfDLLRs--~g~syV~DVNGw 248 (993)
..||+++. ++|.++++++|. .+|-|-++-. ++..||+|||=.
T Consensus 131 ~~L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR 179 (211)
T PF02786_consen 131 QTLSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPR 179 (211)
T ss_dssp SSS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS
T ss_pred cccchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCC
Confidence 57888665 478999999985 5788899998 688999999954
No 79
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=97.40 E-value=0.00069 Score=75.90 Aligned_cols=171 Identities=25% Similarity=0.388 Sum_probs=114.9
Q ss_pred CCcCEEeecccCCCChHHHHHHHhhcCCc----ccCCcc-hhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 001944 14 PICDCLIAFYSSGYPLEKAESYATLRKPF----LVNELE-PQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 88 (993)
Q Consensus 14 P~cD~LIsF~S~GFPL~KAi~y~~lr~p~----~iNdl~-~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~ 88 (993)
+..||-|.=+ +||+. ...++++ .=|+.. .-.-+-+|.+.|+.|...|.|.|.+.-+
T Consensus 82 ~dvD~~ii~~-sg~e~------l~~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~------------ 142 (389)
T COG2232 82 EDVDAPIIPF-SGFEA------LRTSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKI------------ 142 (389)
T ss_pred hhcceeeeec-ccccc------ccccCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhhh------------
Confidence 5678844433 47765 2223443 345555 6777888999999999999998865333
Q ss_pred ccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC---
Q 001944 89 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT--- 165 (993)
Q Consensus 89 ~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t--- 165 (993)
+-+. -| .||.|+||++|. ||. ++++. ++-+. + -.-+|.||||+-
T Consensus 143 ----e~~~-~g---ekt~IlKPv~Ga-------------GG~---~el~~-----~~Ee~--~--~~~~i~Qefi~G~p~ 189 (389)
T COG2232 143 ----EPLE-EG---EKTLILKPVSGA-------------GGL---VELVK-----FDEED--P--PPGFIFQEFIEGRPV 189 (389)
T ss_pred ----hhhh-hc---ceeeEEeeccCC-------------Cce---eeecc-----ccccc--C--CcceehhhhcCCcee
Confidence 1111 22 379999999995 332 34332 22111 0 167899999973
Q ss_pred ------CCceeEEEEECCceeEEEeeeCCCCCCeeeecCC-----CCceeeeeeCCHHHHHHHHHHHHHhCCc-eeEEEE
Q 001944 166 ------GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPD-----GKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDL 233 (993)
Q Consensus 166 ------~G~DIKVytVG~~~vhAe~RKSP~vDG~vrrN~~-----gke~r~~v~Lt~eEk~iA~ka~~afgq~-VcGfDL 233 (993)
+|.|....+|..+++. | ++.+-. |-=..+++....|-.++|..+..-||+. --|||+
T Consensus 190 Svs~is~g~~a~~la~N~QiI~----------~-~~~~~~~f~Y~GNlTP~~~~~~ee~e~la~elV~~lgL~GsnGVDf 258 (389)
T COG2232 190 SVSFISNGSDALTLAVNDQIID----------G-LRGEYSQFVYKGNLTPFPYEEVEEAERLAEELVEELGLVGSNGVDF 258 (389)
T ss_pred EEEEEecCcceEEEEEeeeeec----------c-cccccccceeccCcCCCcchhhHHHHHHHHHHHHHhccccccccce
Confidence 5777777777766654 1 111111 4556677777777789999999999974 679999
Q ss_pred EeeCCCcEEEeccC
Q 001944 234 LRCEGRSYVCDVNG 247 (993)
Q Consensus 234 LRs~g~syV~DVNG 247 (993)
+-...+|||+|||=
T Consensus 259 vl~d~gpyViEVNP 272 (389)
T COG2232 259 VLNDKGPYVIEVNP 272 (389)
T ss_pred EeecCCcEEEEecC
Confidence 99999999999993
No 80
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=97.38 E-value=0.00074 Score=76.93 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHH
Q 001944 54 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKEL 133 (993)
Q Consensus 54 ~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rL 133 (993)
+|++..|.+|.++|||+|+++-. |. + +..|+|+||..|. |.-.+ =
T Consensus 125 ~dKk~~yk~L~~aGI~~Pk~~~~----p~-------------e-----Id~PVIVKp~~as------------G~~sr-G 169 (366)
T PRK13277 125 TGEKNYYWLLEKAGIPYPKLFKD----PE-------------E-----IDRPVIVKLPEAK------------RRLER-G 169 (366)
T ss_pred cCHHHHHHHHHHcCCCCceeecC----cc-------------c-----cCccEEEEECCCC------------Ccccc-C
Confidence 56788899999999999999873 21 1 2369999999997 20011 1
Q ss_pred HhhcCCCcccccccccc------c--ccCcceEEeeccCCCCceeEEEEE--CC--ceeEEEeeeCCCCCCeeee-----
Q 001944 134 FRKVGNRSSEFHPDVRR------V--RREGSYIYEEFMPTGGTDVKVYTV--GP--EYAHAEARKSPVVDGVVMR----- 196 (993)
Q Consensus 134 frkign~sS~~~p~~~~------~--r~~gsyIyEEFi~t~G~DIKVytV--G~--~~vhAe~RKSP~vDG~vrr----- 196 (993)
|.++.|.+. |...... + .....+++||||.-.--.+-+|.. -+ +++..-.|----+||.+|-
T Consensus 170 ~f~a~s~eE-l~~~a~~l~~~g~I~~~~~~~~iIQEyI~G~ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~pa~~q 248 (366)
T PRK13277 170 FFTASSYED-FYEKSEELIKAGVIDREDLKNARIEEYVIGAHFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRLPAPQQ 248 (366)
T ss_pred eEeeCCHHH-HHHHHHhhhhcCcccccccccceeEeccCCCEEEEEEEEeccCCcEEEEEEeeccccccccccccChhhh
Confidence 112222211 1111111 1 122467899999742233335543 34 4555555533336776662
Q ss_pred --------cCCCCceeeeeeC----CHHHHHHHHHHHHHhCC-----ce--eEEEEEeeC-CCcEEEecc
Q 001944 197 --------NPDGKEVRYPVLL----TPNEKQMAREVCIAFRQ-----AV--CGFDLLRCE-GRSYVCDVN 246 (993)
Q Consensus 197 --------N~~gke~r~~v~L----t~eEk~iA~ka~~afgq-----~V--cGfDLLRs~-g~syV~DVN 246 (993)
+.--|+ .|+.+ -++-.+++.+++++++. .+ ..+|...+. +..||+|||
T Consensus 249 l~~~~~p~~vv~G~--~p~t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d~~~~V~EIn 316 (366)
T PRK13277 249 LKLNEEPRYIEVGH--EPATIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVYDVA 316 (366)
T ss_pred hhcccCCceEEEcC--ccccchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCCCcEEEEEEc
Confidence 122222 23333 35667788888899873 22 245666654 678899999
No 81
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=97.35 E-value=0.00027 Score=82.41 Aligned_cols=169 Identities=19% Similarity=0.215 Sum_probs=110.6
Q ss_pred cchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCC
Q 001944 47 LEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSA 126 (993)
Q Consensus 47 l~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~ 126 (993)
.+....+.||...-++++++|||+|+.... +- ...++.+. .-+.+++|+|+||..|- -
T Consensus 107 ~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~----~~------~~~ee~~~-~a~~iGyPVivKa~~Gg-----------G 164 (449)
T COG0439 107 AEAIRRMGDKITARRLMAKAGVPVVPGSDG----AV------ADNEEALA-IAEEIGYPVIVKAAAGG-----------G 164 (449)
T ss_pred HHHHHHhhhHHHHHHHHHHcCCCcCCCCCC----Cc------CCHHHHHH-HHHHcCCCEEEEECCCC-----------C
Confidence 355678999999999999999999988721 10 01223333 22345699999999886 3
Q ss_pred CChHHHHHhhcCCCcccccccccc------cccCcceEEeeccCCCCceeEEEEECC---ceeEEEeeeCCCCCCeeeec
Q 001944 127 GGGMKELFRKVGNRSSEFHPDVRR------VRREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRN 197 (993)
Q Consensus 127 GgG~~rLfrkign~sS~~~p~~~~------~r~~gsyIyEEFi~t~G~DIKVytVG~---~~vhAe~RKSP~vDG~vrrN 197 (993)
|-|+ |+.+ |.+.....-... .-.++.++.|+|+.. -+=|=|-+.|+ .++|.-.|-.. .=||+
T Consensus 165 g~G~-r~v~---~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~-~rhievqv~gD~~g~~i~l~eRdcs----iqrr~ 235 (449)
T COG0439 165 GRGM-RVVR---NEEELEAAFEAARGEAEAAFGNPRVYLEKFIEG-PRHIEVQVLGDGHGNVIHLGERDCS----IQRRH 235 (449)
T ss_pred cccE-EEEC---CHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccC-CceEEEEEEEcCcccEEEEEeccCC----CcCCc
Confidence 3344 3444 333333311001 124677999999987 34555556665 45888888632 24666
Q ss_pred CCCCceeeeeeCCHHHHH----HHHHHHHHhCCceeE-EEEEee-CCCcEEEecc
Q 001944 198 PDGKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRC-EGRSYVCDVN 246 (993)
Q Consensus 198 ~~gke~r~~v~Lt~eEk~----iA~ka~~afgq~VcG-fDLLRs-~g~syV~DVN 246 (993)
-.=.|..-...++++.++ .|.+++++.|-.-|| |..|-. +|++|++|+|
T Consensus 236 qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~~~yfiEmN 290 (449)
T COG0439 236 QKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIEMN 290 (449)
T ss_pred cceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCCEEEEEEe
Confidence 665666655566765554 467788887777776 788888 5999999999
No 82
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.00088 Score=75.33 Aligned_cols=214 Identities=22% Similarity=0.272 Sum_probs=137.9
Q ss_pred EEeecccCCCC-------hHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhC----C---CCCC-CEEEEeccCCC
Q 001944 18 CLIAFYSSGYP-------LEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKY----G---IPVP-RYALVNREVPY 82 (993)
Q Consensus 18 ~LIsF~S~GFP-------L~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~----g---IP~P-~t~~~~r~~p~ 82 (993)
+||-=+..+-. |--+++|+- ...||++.+.+-+-||--+..-|.+. | +|+= .|.+-+
T Consensus 159 VlirqhA~~mA~~~d~rslvig~qyag---iP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPn----- 230 (488)
T KOG3895|consen 159 VLIRQHAFSMALNEDYRSLVIGLQYAG---IPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPN----- 230 (488)
T ss_pred EEEcccchhhccccchHHHHHHHHhcC---CcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCC-----
Confidence 45555555544 223455554 55899999999999995555555442 3 4432 222221
Q ss_pred ccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-cCcceEEee
Q 001944 83 QELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEE 161 (993)
Q Consensus 83 ~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyEE 161 (993)
....+..- .+|+|+|--.|- +|-|-. ||.|....-|-+. .+. .+.---.|-
T Consensus 231 --------HK~m~s~~----tyPvVVkvghah-----------sGmGKi----KV~Nh~dfqDi~s-vval~~Tyat~ep 282 (488)
T KOG3895|consen 231 --------HKEMLSQP----TYPVVVKVGHAH-----------SGMGKI----KVENHEDFQDIAS-VVALTKTYATAEP 282 (488)
T ss_pred --------chhhccCC----CCcEEEEecccc-----------ccccee----eecchhhhHhHHH-HHHHHhhhhhccc
Confidence 22222212 379999997776 665533 4555544333211 112 222234677
Q ss_pred ccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhC-CceeEEEEEee-CCC
Q 001944 162 FMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFR-QAVCGFDLLRC-EGR 239 (993)
Q Consensus 162 Fi~t~G~DIKVytVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~afg-q~VcGfDLLRs-~g~ 239 (993)
||.. --||||=-||.+|- |-.|.| +.|.|.+|+ |-..-+.|-.++.-|...--++..|| +.||.||+|-+ .|+
T Consensus 283 FiDa-KYDiriQKIG~nYK-aymRts--IsgnWKtNt-GSamLEQIamseRyklwvdtcse~fGgldICav~alhsKdGr 357 (488)
T KOG3895|consen 283 FIDA-KYDIRIQKIGHNYK-AYMRTS--ISGNWKTNT-GSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGR 357 (488)
T ss_pred cccc-cceeehhhhhhhHH-HHhhhh--hccCcccCc-hHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccch
Confidence 8877 46999999999995 555667 599999997 56666788888899988888888996 79999999999 467
Q ss_pred cEEEeccCccccccccccH----HHHHHHHHHHHHHhhCCCC
Q 001944 240 SYVCDVNGWSFVKNSYKYY----DDAACVLRKMFLEAKAPHL 277 (993)
Q Consensus 240 syV~DVNGwSFVK~n~kYY----ddcA~iL~~~~l~~~~~~~ 277 (993)
-||+|||+-| +-|+ ++=.+.+..+....+++.+
T Consensus 358 d~i~eV~d~s-----mpliGeh~eeDrql~~~Lvvskmaq~l 394 (488)
T KOG3895|consen 358 DYIIEVMDSS-----MPLIGEHQEEDRQLISELVVSKMAQLL 394 (488)
T ss_pred hheeeecccc-----ccccccchhHHHHHHHHHHHHHhhhcc
Confidence 9999999854 3333 2233455555555555544
No 83
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=96.73 E-value=0.006 Score=63.04 Aligned_cols=149 Identities=21% Similarity=0.329 Sum_probs=78.6
Q ss_pred HHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccc-c-CcceeEEeccCCCChHHHHHhhcCCC
Q 001944 63 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-D-DHSIMIYYPSSAGGGMKELFRKVGNR 140 (993)
Q Consensus 63 L~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~G-e-dHni~IYyp~~~GgG~~rLfrkign~ 140 (993)
|++.|||+|++..+... +-+.-....++.|+|.|+..| - .++.++-...+. ..+.++.+
T Consensus 1 l~~~gip~~~~~~i~~~-------------~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~d---l~~a~~~~--- 61 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSL-------------EDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEED---LEKAWQEL--- 61 (172)
T ss_dssp HHHTT--B-EEEEESSH-------------HHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGG---HHHHHHHT---
T ss_pred CcccCCCCCCeEEECCH-------------HHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHH---HHHHHHhc---
Confidence 78999999999999662 122212334678999997665 3 223333332221 22333322
Q ss_pred cccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHH
Q 001944 141 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQM 216 (993)
Q Consensus 141 sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~----eEk~i 216 (993)
..+.+|.|+||+- ...|=|.++-+. .-+.+-=|++ ..+.+|-.-...-.|..+++ +-++|
T Consensus 62 ------------~~~~~ilE~~v~f-~~EiSvivaR~~--~G~~~~yp~~-en~~~~~il~~s~~Pa~i~~~~~~~a~~i 125 (172)
T PF02222_consen 62 ------------GGGPCILEEFVPF-DREISVIVARDQ--DGEIRFYPPV-ENVHRDGILHESIAPARISDEVEEEAKEI 125 (172)
T ss_dssp ------------TTSCEEEEE---E-SEEEEEEEEEET--TSEEEEEEEE-EEEEETTEEEEEEESCSS-HHHHHHHHHH
T ss_pred ------------CCCcEEEEeccCC-cEEEEEEEEEcC--CCCEEEEcCc-eEEEECCEEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999985 344444443211 1112222211 11222222234445666664 55678
Q ss_pred HHHHHHHhCC-ceeEEEEEeeCCC--cEEEecc
Q 001944 217 AREVCIAFRQ-AVCGFDLLRCEGR--SYVCDVN 246 (993)
Q Consensus 217 A~ka~~afgq-~VcGfDLLRs~g~--syV~DVN 246 (993)
|.+|+.+++. .|-+|.+.-+.++ -||-|+-
T Consensus 126 a~~i~~~l~~vGv~~VE~Fv~~~g~~v~vNEia 158 (172)
T PF02222_consen 126 ARKIAEALDYVGVLAVEFFVTKDGDEVLVNEIA 158 (172)
T ss_dssp HHHHHHHHTSSEEEEEEEEEETTSTEEEEEEEE
T ss_pred HHHHHHHcCcEEEEEEEEEEecCCCEEEEEecc
Confidence 8888888864 5778899888555 4787764
No 84
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=96.44 E-value=0.0064 Score=68.13 Aligned_cols=173 Identities=20% Similarity=0.311 Sum_probs=110.5
Q ss_pred CCcccCCcchhhhhhhHHHHHHHH-HhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcce
Q 001944 40 KPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSI 118 (993)
Q Consensus 40 ~p~~iNdl~~q~ll~DR~~v~qiL-~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni 118 (993)
+-.+|-...+-++..||-..-++. ++.|+||-++-|++. .+++.. .-+.++.|.|+||+-++
T Consensus 98 G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s------------~~e~~~-a~~~iGfPcvvKPvMSS---- 160 (394)
T COG0027 98 GYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADS------------LEELRA-AVEKIGFPCVVKPVMSS---- 160 (394)
T ss_pred CceEccchHHHHhhhcHHHHHHHHHHHhCCCCcccccccc------------HHHHHH-HHHHcCCCeeccccccc----
Confidence 344666666677777773332222 345999999999966 222222 22345699999999988
Q ss_pred eEEeccCCCChHHHHHhhcCCCcccccccccccc-cCcceEEeeccCCCCceeEEEE---ECCc--eeEEEeeeCCCCCC
Q 001944 119 MIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYT---VGPE--YAHAEARKSPVVDG 192 (993)
Q Consensus 119 ~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyEEFi~t~G~DIKVyt---VG~~--~vhAe~RKSP~vDG 192 (993)
.|-|. -+.|+..+-.+.++--...-| ..+..|+|+||+-+ ..|-..| +++. ||+ | -|
T Consensus 161 -------SGkGq-svv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd-~EiTlLtvr~~~~~~~Fc~------P--IG 223 (394)
T COG0027 161 -------SGKGQ-SVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFD-FEITLLTVRAVDGTGSFCA------P--IG 223 (394)
T ss_pred -------CCCCc-eeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecce-EEEEEEEEEEecCCCCcCC------C--cc
Confidence 77775 577777655555542111113 46779999999873 2334444 3443 553 3 23
Q ss_pred eeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhC-CceeEEEEEeeCCCcEEEecc
Q 001944 193 VVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFR-QAVCGFDLLRCEGRSYVCDVN 246 (993)
Q Consensus 193 ~vrrN~~gke~r~~v~Lt~e----Ek~iA~ka~~afg-q~VcGfDLLRs~g~syV~DVN 246 (993)
..+-+-+=-|.-.|-.+|+. -+.||.+|+.|+| ..+-||.|.-+.+.-|.-||-
T Consensus 224 Hrq~dgdY~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~gDeV~FsEVS 282 (394)
T COG0027 224 HRQEDGDYRESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGDEVIFSEVS 282 (394)
T ss_pred cccCCCChhcccCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeCCEEEEeecC
Confidence 33333333577788889874 4668888889986 569999998887777777774
No 85
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=96.40 E-value=0.018 Score=66.49 Aligned_cols=211 Identities=19% Similarity=0.194 Sum_probs=117.7
Q ss_pred eeeeccCCCCC--------CcCEEeecccCCCChHHHHHHHhh-----cC-CcccCCcchhhhhhhHHHHHHHHHhCCCC
Q 001944 4 AWFINLGTRWP--------ICDCLIAFYSSGYPLEKAESYATL-----RK-PFLVNELEPQHLLHDRRKVYEQLEKYGIP 69 (993)
Q Consensus 4 ~~~~~~Ve~WP--------~cD~LIsF~S~GFPL~KAi~y~~l-----r~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP 69 (993)
+..++|+.-++ ..|.++.-+.-..+|.-|.+--+. .+ +.+.++.++..++.||.+..+.+.++|+|
T Consensus 51 ~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~ 130 (400)
T COG0458 51 KVYIEPITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIP 130 (400)
T ss_pred eeeeecCcHHHHHHHHHhcCcceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCC
Confidence 34556666555 349999999999999666654442 12 56899999999999999999999999999
Q ss_pred CCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc
Q 001944 70 VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR 149 (993)
Q Consensus 70 ~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~ 149 (993)
+| +.++.. ..+..+.+. .++.|+|+||-.|. -|.|+. .++.. .++..-..
T Consensus 131 ~P-~~~~~~---------~~e~~~~~~----~ig~PvIVrP~~~l-----------GG~G~~-i~~n~----eel~~~~~ 180 (400)
T COG0458 131 VP-SRIAHS---------VEEADEIAD----EIGYPVIVKPSFGL-----------GGSGGG-IAYNE----EELEEIIE 180 (400)
T ss_pred CC-cccccc---------HHHHhhhHh----hcCCCEEEecCcCC-----------CCCcee-EEeCH----HHHHHHHH
Confidence 99 333322 111223333 34589999999986 332443 33211 11110000
Q ss_pred -ccc--cCcceEEeeccCCCCce--eEEEEECCc--eeEEEeeeCCCCCCeeeecCCCCceee---eeeCCHHHHH----
Q 001944 150 -RVR--REGSYIYEEFMPTGGTD--VKVYTVGPE--YAHAEARKSPVVDGVVMRNPDGKEVRY---PVLLTPNEKQ---- 215 (993)
Q Consensus 150 -~~r--~~gsyIyEEFi~t~G~D--IKVytVG~~--~vhAe~RKSP~vDG~vrrN~~gke~r~---~v~Lt~eEk~---- 215 (993)
..+ .-...+.||+|....+. +.+..--.+ ++-.|.+-=| .|. |-+.... .-.|+..|-+
T Consensus 181 ~~l~~s~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp--~gv-----htgdsi~vapaqtl~d~eyq~~r~ 253 (400)
T COG0458 181 EGLRASPVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDP--MGV-----HTGDSITVAPAQTLTDKEYQMLRD 253 (400)
T ss_pred hccccCccccceeeeeecCceEEEEEEEEeCCCCEEEEEeCCcccc--ccc-----cccceeeeccccccccHHHHHHHH
Confidence 011 12345677777652111 111111111 1223333333 222 2222221 2245665544
Q ss_pred HHHHHHHHhCCc-eeEEEEEeeC--CCcEEEecc-Ccccc
Q 001944 216 MAREVCIAFRQA-VCGFDLLRCE--GRSYVCDVN-GWSFV 251 (993)
Q Consensus 216 iA~ka~~afgq~-VcGfDLLRs~--g~syV~DVN-GwSFV 251 (993)
.|.++.+++|.. =|-|+.--.. +..||+||| .+|=.
T Consensus 254 ~~~~iir~igi~G~~niQ~av~~~~~~~~viEvNpRvSrs 293 (400)
T COG0458 254 AAIKVIREIGIEGGCNIQFAVDPGGGELYVIEINPRVSRS 293 (400)
T ss_pred HHHHHHHHhcccCCCceeEEEcCCCceEEEEEecCCcCcc
Confidence 455888888866 2445554443 357999999 66644
No 86
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=95.83 E-value=0.47 Score=51.54 Aligned_cols=180 Identities=20% Similarity=0.248 Sum_probs=101.8
Q ss_pred chhhhhhhHHHHHHHHHhCC--CCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccC
Q 001944 48 EPQHLLHDRRKVYEQLEKYG--IPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSS 125 (993)
Q Consensus 48 ~~q~ll~DR~~v~qiL~~~g--IP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~ 125 (993)
+.-..|-||..|-..+++.+ ...|+++-+-.+ + + +++-..+..+||+||..|+. .+.|+.-++
T Consensus 13 ~~~~~~~DK~~VR~yv~~~~g~~~l~pll~v~~~-~-----------~--~i~~~~Lp~~fViK~nhgsg-~~~i~~dk~ 77 (239)
T PF14305_consen 13 PLFTKLADKYAVREYVEEKIGEEYLPPLLGVYDN-P-----------D--DIDFDSLPDKFVIKPNHGSG-SNIIVRDKS 77 (239)
T ss_pred ccceecchHHHHHHHHHHhCCCceECceeecCCC-h-----------h--hhhhhcCCCCEEEEEecCCC-cEEEEeCCc
Confidence 34457889999999998885 445555554332 1 1 23334456799999999985 445555444
Q ss_pred CCC--hHHHHHhh-cCCCcccccccccccc-cCcceEEeeccCC-CC---ceeEEEEECCc--eeEEEeeeCCC-----C
Q 001944 126 AGG--GMKELFRK-VGNRSSEFHPDVRRVR-REGSYIYEEFMPT-GG---TDVKVYTVGPE--YAHAEARKSPV-----V 190 (993)
Q Consensus 126 ~Gg--G~~rLfrk-ign~sS~~~p~~~~~r-~~gsyIyEEFi~t-~G---~DIKVytVG~~--~vhAe~RKSP~-----v 190 (993)
..- -.++.+++ ....-.....+- ..+ -.--.|.||+|.. .| .|.|+|+.+++ ++.......+. .
T Consensus 78 ~~d~~~~~~~~~~wl~~~~~~~~~E~-~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~~~~~~~~y 156 (239)
T PF14305_consen 78 KLDIEEAKKKLNRWLKKDYYYQSREW-HYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRFGNHKRNFY 156 (239)
T ss_pred ccCHHHHHHHHHHHhhhccccccccc-cCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCCCCeEEEEE
Confidence 321 11111221 111111111111 111 2345899999999 66 79999999995 55554443210 1
Q ss_pred CCeeeecC------CCCceeeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeCCCcEEEecc
Q 001944 191 DGVVMRNP------DGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVN 246 (993)
Q Consensus 191 DG~vrrN~------~gke~r~~v~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~g~syV~DVN 246 (993)
|.+|.+=. .+..+..|-.| ++..++|.++|+-|. .|=||+..++|+.|+-|.=
T Consensus 157 d~dw~~l~~~~~~~~~~~~~kP~~l-~emi~iA~~Ls~~f~--fvRVDlY~~~~~iyFGElT 215 (239)
T PF14305_consen 157 DRDWNRLPFRSDYPPDEDIPKPKNL-EEMIEIAEKLSKGFP--FVRVDLYNVDGKIYFGELT 215 (239)
T ss_pred CcccCCCccccCCCCCCCCCCChhH-HHHHHHHHHHccCCC--EEEEEEEEeCCcEEEEeee
Confidence 11111100 11222222222 355667777777655 7899999999999999974
No 87
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=95.81 E-value=0.053 Score=57.43 Aligned_cols=165 Identities=20% Similarity=0.286 Sum_probs=92.0
Q ss_pred hHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcE-EEeeccc-cCcceeEEeccCC-CChHH
Q 001944 55 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPF-VEKPVHG-DDHSIMIYYPSSA-GGGMK 131 (993)
Q Consensus 55 DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPf-VeKpv~G-edHni~IYyp~~~-GgG~~ 131 (993)
+|..+=++++++||||+++..... ..+...+|+-. ..|. |+|+--- ...++.|.-.... --..+
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~---------~~~A~~~l~~~----~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~ 68 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTD---------YEEALEYLEEQ----GYPYVVIKADGLAAGKGVVIADDREEALEALR 68 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESS---------HHHHHHHHHHH----SSSEEEEEESSSCTTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCeeEECC---------HHHHHHHHHhc----CCCceEEccCCCCCCCEEEEeCCHHHHHHHHH
Confidence 577788999999999998777754 11244455423 3577 9998431 2245555533221 11122
Q ss_pred HHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEE-----eeeCCCCCCeeeecCCCCceeee
Q 001944 132 ELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAE-----ARKSPVVDGVVMRNPDGKEVRYP 206 (993)
Q Consensus 132 rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe-----~RKSP~vDG~vrrN~~gke~r~~ 206 (993)
++|.. ..|. ..+...|.|||+.-.=--+=++|=|..++.-- .|-- ||+-=-|+-|=+.-.|
T Consensus 69 ~~~~~-----~~fg------~~~~~vvIEE~l~G~E~S~~a~~dG~~~~~lp~aqD~Kr~~---dgd~GpnTGGMGa~sp 134 (194)
T PF01071_consen 69 EIFVD-----RKFG------DAGSKVVIEEFLEGEEVSLFALTDGKNFVPLPPAQDHKRLF---DGDTGPNTGGMGAYSP 134 (194)
T ss_dssp HHHTS-----STTC------CCGSSEEEEE---SEEEEEEEEEESSEEEEEEEBEEEEEEE---TTTEEEEESESEEEES
T ss_pred Hhccc-----cccC------CCCCcEEEEeccCCeEEEEEEEEcCCeEEECcchhcccccc---CCCCCCCCCCccceee
Confidence 22220 0111 13567899999975444555677777765322 2444 8888889988777667
Q ss_pred eeC-CHHH-----HHHHHHHHHHh---CCceeE---EEEEeeCCCcEEEecc
Q 001944 207 VLL-TPNE-----KQMAREVCIAF---RQAVCG---FDLLRCEGRSYVCDVN 246 (993)
Q Consensus 207 v~L-t~eE-----k~iA~ka~~af---gq~VcG---fDLLRs~g~syV~DVN 246 (993)
+.. |+++ +.|...+.+++ |..++| +.|+-+.++|+|+|-|
T Consensus 135 ~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt~~Gp~vlEfN 186 (194)
T PF01071_consen 135 VPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLTEDGPKVLEFN 186 (194)
T ss_dssp TTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEETTEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEeCCCcEEEEEe
Confidence 754 5543 23444444444 555555 5777788999999998
No 88
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.54 E-value=0.16 Score=58.43 Aligned_cols=203 Identities=18% Similarity=0.245 Sum_probs=118.6
Q ss_pred ecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCe
Q 001944 21 AFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGN 100 (993)
Q Consensus 21 sF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~ 100 (993)
.|=-.--|. .|+.++... ..+-=..+...+.+||..==+.|+++|||||.+..+.+. +|... -..
T Consensus 67 T~EfE~V~~-~aL~~l~~~-~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~------------~el~~-~~~ 131 (375)
T COG0026 67 TYEFENVPA-EALEKLAAS-VKVFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSA------------EELDA-AAA 131 (375)
T ss_pred EEeeccCCH-HHHHHHHhh-cCcCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCH------------HHHHH-HHH
Confidence 333344555 677777766 334446688899999999999999999999999999762 12221 223
Q ss_pred eccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCcee
Q 001944 101 RFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYA 180 (993)
Q Consensus 101 ~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~v 180 (993)
.|+.|+|+|.--|- | .|-|.. .++......+... ..-..+..|.|+|++=. .-|-|.++ +-.
T Consensus 132 ~~g~p~VlKtr~gG-------Y---DGkGQ~-~i~~~~~~~~~~~----~~~~~~~~vlE~fV~F~-~EiSvi~a--R~~ 193 (375)
T COG0026 132 DLGFPAVLKTRRGG-------Y---DGKGQW-RIRSDADLELRAA----GLAEGGVPVLEEFVPFE-REISVIVA--RSN 193 (375)
T ss_pred HcCCceEEEecccc-------c---cCCCeE-EeeCcccchhhHh----hhhccCceeEEeecccc-eEEEEEEE--EcC
Confidence 45689999998874 1 354543 3442322222111 11223444999999873 33444444 111
Q ss_pred EEEeeeCCCCCCeeeecCCCCcee-eee---eCC----HHHHHHHHHHHHHhCC-ceeEEEEEeeCCCc-EEEeccCccc
Q 001944 181 HAEARKSPVVDGVVMRNPDGKEVR-YPV---LLT----PNEKQMAREVCIAFRQ-AVCGFDLLRCEGRS-YVCDVNGWSF 250 (993)
Q Consensus 181 hAe~RKSP~vDG~vrrN~~gke~r-~~v---~Lt----~eEk~iA~ka~~afgq-~VcGfDLLRs~g~s-yV~DVNGwSF 250 (993)
-.+.+-=|++ -|.|..++= +.| .++ .+-++||.+++..++. .|-||.+.-..+|. +|-|.- +=
T Consensus 194 ~G~~~~yP~~-----eN~h~~gIl~~siaPa~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiA--PR 266 (375)
T COG0026 194 DGEVAFYPVA-----ENVHRNGILRTSIAPARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIA--PR 266 (375)
T ss_pred CCCEEEeccc-----ceeeecCEEEEEEecCcCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCcEEEeecc--CC
Confidence 2233333422 366654442 222 244 4667888899888874 57788888887754 344432 34
Q ss_pred cccccccHHHHHH
Q 001944 251 VKNSYKYYDDAAC 263 (993)
Q Consensus 251 VK~n~kYYddcA~ 263 (993)
|-||-.|=-+.+.
T Consensus 267 vHNSGH~T~~gc~ 279 (375)
T COG0026 267 VHNSGHWTIDGCE 279 (375)
T ss_pred CCCccccchhhcc
Confidence 4455555444443
No 89
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=93.06 E-value=0.22 Score=56.00 Aligned_cols=159 Identities=25% Similarity=0.378 Sum_probs=91.5
Q ss_pred hhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChH
Q 001944 52 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGM 130 (993)
Q Consensus 52 ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~ 130 (993)
-+-.|=.-|.+-.+.|+|.|+|+.++.. .| ..+-.+..|+|.||-.|- .|-+ |-
T Consensus 111 wlceKPllY~ra~elgl~~P~Ty~v~S~------------~d---~~~~el~FPvILKP~mgg~~~~~----------ar 165 (415)
T COG3919 111 WLCEKPLLYNRAEELGLPYPKTYLVNSE------------ID---TLVDELTFPVILKPGMGGSVHFE----------AR 165 (415)
T ss_pred HHhhCcHHHHHHHHhCCCCcceEEecch------------hh---hhhhheeeeEEecCCCCCcceee----------hh
Confidence 3445666788899999999999999862 11 223345679999996552 2211 11
Q ss_pred HHHHhhcCCCccccccccc-ccc--cCcceEEeeccCCCCceeEEEEE----CC---ceeEEEeeeCCCCCCeeeecCCC
Q 001944 131 KELFRKVGNRSSEFHPDVR-RVR--REGSYIYEEFMPTGGTDVKVYTV----GP---EYAHAEARKSPVVDGVVMRNPDG 200 (993)
Q Consensus 131 ~rLfrkign~sS~~~p~~~-~~r--~~gsyIyEEFi~t~G~DIKVytV----G~---~~vhAe~RKSP~vDG~vrrN~~g 200 (993)
.+.|+ +.++. ++..-.. +.. .--+.|+||||+-+|+.-++|.- |- ++.+--+|+=|| | |
T Consensus 166 aKa~~-a~d~e-e~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rqyPv-d--f------ 234 (415)
T COG3919 166 AKAFT-AADNE-EMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQYPV-D--F------ 234 (415)
T ss_pred hheee-ccCHH-HHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhcCCc-c--c------
Confidence 12332 11110 0000000 011 23457999999999998888641 22 233334566674 3 2
Q ss_pred CceeeeeeCCHH--HHHHHHHHHHHhC-CceeEEEEEee-CCCcE-EEecc
Q 001944 201 KEVRYPVLLTPN--EKQMAREVCIAFR-QAVCGFDLLRC-EGRSY-VCDVN 246 (993)
Q Consensus 201 ke~r~~v~Lt~e--Ek~iA~ka~~afg-q~VcGfDLLRs-~g~sy-V~DVN 246 (993)
|-..+.|++-++ --+-|+++-..++ -...-||+-+. .+||| ++|||
T Consensus 235 gytst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvN 285 (415)
T COG3919 235 GYTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVN 285 (415)
T ss_pred ccccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeec
Confidence 333455666552 2333555544444 34677899887 78899 99999
No 90
>KOG3672 consensus Histidine acid phosphatase [General function prediction only]
Probab=91.32 E-value=0.13 Score=59.25 Aligned_cols=62 Identities=19% Similarity=0.172 Sum_probs=40.4
Q ss_pred hhHHHhhc--cCCCCcchhhh--hhcccccceEeecCCchHHHHHHHHHHhhccCCCCCCcceeeeEecCCCC
Q 001944 454 NEIAYWWG--SHSEGTGLLRL--HSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSM 522 (993)
Q Consensus 454 e~LG~~fR--Yp~~~~gLLrL--hst~rhDlKIysSdEgRVq~TAaaFakg~L~legeLtPilv~lV~kd~~l 522 (993)
=.+|..|| |-- -+|.+ |.---.|+-++|+--+|.-.||-||-=+||--. ...|| .||-..++
T Consensus 178 L~~G~~~r~~Y~k---~~lk~~pN~~sv~~lyv~TT~y~RT~QSaLA~lf~~lp~~-~w~~i---~iR~s~s~ 243 (487)
T KOG3672|consen 178 LRLGKYFRHRYEK---TKLKADPNQRSVADLYVVTTKYNRTVQSALAFLFLYLPRT-FWAPI---QIRASNSS 243 (487)
T ss_pred HhhhHHHHHHHhh---ccccCCccccccceeEEEeccccHHHHHHHHHHHHhcchh-hhhee---eeecCccc
Confidence 35799999 631 11222 223336777999999999999999987777653 35565 45544333
No 91
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=87.05 E-value=1 Score=56.19 Aligned_cols=182 Identities=20% Similarity=0.261 Sum_probs=116.8
Q ss_pred CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeE
Q 001944 41 PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMI 120 (993)
Q Consensus 41 p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~I 120 (993)
.|+==..+....+-||-++-.+-.++|||+ +-..++|. ++-+.++--.+..++|+++|..-|-
T Consensus 107 ~FIGP~~e~ld~~GdKv~Ar~~A~~agvPv----ipgt~~~~-------~~~ee~~~fa~~~gyPvmiKA~~GG------ 169 (1149)
T COG1038 107 TFIGPKPEVLDMLGDKVKARNAAIKAGVPV----IPGTDGPI-------ETIEEALEFAEEYGYPVMIKAAAGG------ 169 (1149)
T ss_pred EEeCCCHHHHHHhccHHHHHHHHHHcCCCc----cCCCCCCc-------ccHHHHHHHHHhcCCcEEEEEccCC------
Confidence 344456788899999999888888999995 22233332 2222222123445799999998774
Q ss_pred EeccCCCChHHHHHhhcCCCccccccccc----ccccCcceEEeeccCCCCceeEEEEECC---ceeEEEeeeCCCCCCe
Q 001944 121 YYPSSAGGGMKELFRKVGNRSSEFHPDVR----RVRREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGV 193 (993)
Q Consensus 121 Yyp~~~GgG~~rLfrkign~sS~~~p~~~----~~r~~gsyIyEEFi~t~G~DIKVytVG~---~~vhAe~RKSP~vDG~ 193 (993)
||-+.|..|+...-...|.--.. .+ .++...+|.|+.. -+-|-|=+.|+ ++||--.|-+-|
T Consensus 170 ------GGRGMR~vr~~~~l~~~~~~AksEAkaAF-G~~eVyvEk~ve~-pkHIEVQiLgD~~GnvvHLfERDCSv---- 237 (1149)
T COG1038 170 ------GGRGMRVVRSEADLAEAFERAKSEAKAAF-GNDEVYVEKLVEN-PKHIEVQILGDTHGNVVHLFERDCSV---- 237 (1149)
T ss_pred ------CccceeeecCHHHHHHHHHHHHHHHHHhc-CCCcEEhhhhhcC-cceeEEEEeecCCCCEEEEeecccch----
Confidence 33222344433211111110000 12 3445566888766 66777777774 689999998853
Q ss_pred eeecCCCCceeeeeeCCHHHH----HHHHHHHHHhCCceeE-EEEEee-CCCcEEEeccCcccc
Q 001944 194 VMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAVCG-FDLLRC-EGRSYVCDVNGWSFV 251 (993)
Q Consensus 194 vrrN~~gke~r~~v~Lt~eEk----~iA~ka~~afgq~VcG-fDLLRs-~g~syV~DVNGwSFV 251 (993)
=|||--==|++-.+-|+++.+ +-|.|+|+..|-.=+| |..|-. .|+-|.+|||----|
T Consensus 238 QRRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQV 301 (1149)
T COG1038 238 QRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQV 301 (1149)
T ss_pred hhccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceee
Confidence 477777778888888998765 4689999999977666 666766 458999999965544
No 92
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=82.75 E-value=10 Score=37.89 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=51.9
Q ss_pred ccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHH--HhCCcee
Q 001944 152 RREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCI--AFRQAVC 229 (993)
Q Consensus 152 r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~--afgq~Vc 229 (993)
..+...+..|-|+ -..--|+|++.++++.+ .+-. |..+. ...++.-.-|.++.. .-.-..|
T Consensus 33 ~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~-s~Y~----~~~~~-----------~~~~~~~~~~~~~~~~~~~~p~~~ 95 (130)
T PF14243_consen 33 DPDTPVLVSEVVE-IESEWRCFIVDGEVVTG-SPYR----GDWDL-----------EPDPDVVAFAIQALAAAWTLPPAY 95 (130)
T ss_pred CCCceEEEeceEe-eeeeEEEEEECCEEEEE-eecC----CCccc-----------CCCHHHHHHHHHHHHhcccCCCeE
Confidence 3456667777776 46778999999887554 3321 11111 113444444444444 4557889
Q ss_pred EEEEEee-CCCcEEEecc-Ccc
Q 001944 230 GFDLLRC-EGRSYVCDVN-GWS 249 (993)
Q Consensus 230 GfDLLRs-~g~syV~DVN-GwS 249 (993)
.+|+=++ .|+.+|+|+| ||+
T Consensus 96 vlDvg~~~~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 96 VLDVGVTDDGGWALVEANDGWS 117 (130)
T ss_pred EEEEEEeCCCCEEEEEecCccc
Confidence 9999999 6789999999 554
No 93
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=78.11 E-value=4.2 Score=48.92 Aligned_cols=178 Identities=16% Similarity=0.197 Sum_probs=111.1
Q ss_pred cccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEE
Q 001944 42 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 121 (993)
Q Consensus 42 ~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IY 121 (993)
|+==+..+.+.+-||..+-+|.+++|||+=+- .++ ...+++-..-....|++|+.+|++-|-
T Consensus 98 FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG----~~g-------~~qs~e~~~~~a~eIgyPvMiKa~~GG------- 159 (670)
T KOG0238|consen 98 FIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPG----YHG-------EDQSDEEAKKVAREIGYPVMIKATAGG------- 159 (670)
T ss_pred EECCCHHHHHHhcchHHHHHHHHhcCCccccC----ccc-------ccccHHHHHHHHHhcCCcEEEEeccCC-------
Confidence 33345567788899999999999999995321 111 122223332233467899999998875
Q ss_pred eccCCCChHHHHHhhcCCCccccccccccc-------ccCcceEEeeccCCCCceeEEEEECC---ceeEEEeeeCCCCC
Q 001944 122 YPSSAGGGMKELFRKVGNRSSEFHPDVRRV-------RREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVD 191 (993)
Q Consensus 122 yp~~~GgG~~rLfrkign~sS~~~p~~~~~-------r~~gsyIyEEFi~t~G~DIKVytVG~---~~vhAe~RKSP~vD 191 (993)
-|-|+ |+..+- .+|.-.+... =.+...+.|.||.. -+-|-|=+.|+ +++|--.|-+-+
T Consensus 160 ----GGkGM-ria~~~----~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~n-pRHiEvQv~gD~hGnav~l~ERdCSv-- 227 (670)
T KOG0238|consen 160 ----GGKGM-RIAWSE----EEFEEGLESAKQEAAKSFGDDGMLLEKFIDN-PRHIEVQVFGDKHGNAVHLGERDCSV-- 227 (670)
T ss_pred ----CCcce-EeecCh----HHHHHHHHHHHHHHHhhcCcchhhHHHhccC-CceEEEEEEecCCCcEEEecccccch--
Confidence 22243 333322 1222111111 13455688999987 56666666775 456777787742
Q ss_pred CeeeecCCCCceeeeeeCCHHHH----HHHHHHHHHhCCceeE-EEEE-eeCCCcEEEeccCcccc
Q 001944 192 GVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAVCG-FDLL-RCEGRSYVCDVNGWSFV 251 (993)
Q Consensus 192 G~vrrN~~gke~r~~v~Lt~eEk----~iA~ka~~afgq~VcG-fDLL-Rs~g~syV~DVNGwSFV 251 (993)
=|||--==|.+-.-.|+++-+ +-|.++++|.|-.=+| |..| .+++..|.+|+|--=-|
T Consensus 228 --QRRnQKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQV 291 (670)
T KOG0238|consen 228 --QRRNQKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQV 291 (670)
T ss_pred --hhhhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeeceeee
Confidence 467766555555556666544 5789999999977666 4444 44677889999976555
No 94
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=75.54 E-value=2 Score=50.81 Aligned_cols=54 Identities=17% Similarity=0.170 Sum_probs=39.5
Q ss_pred cch--hhHHHhhc--cCCCCcchhhhhhcc-cccceEeecCCchHHHHHHHHHHhhccCCC
Q 001944 451 NGV--NEIAYWWG--SHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 506 (993)
Q Consensus 451 GGE--e~LG~~fR--Yp~~~~gLLrLhst~-rhDlKIysSdEgRVq~TAaaFakg~L~leg 506 (993)
|++ -.||+.+| |-. .|||-=+..| ..++.|+|++-.|.+|||++|..||.--.|
T Consensus 77 G~~~~~~lG~~lR~rY~~--~~lL~~~~c~~~~~v~v~a~~~~RTi~SAqafl~GlyP~c~ 135 (436)
T PRK10172 77 GGELVTLLGHYQRQRLVA--DGLLAAKGCPQPGQVAAIADVDQRTRKTGEAFLAGLAPDCA 135 (436)
T ss_pred HHHHHHHHHHHHHHHHHh--cCCCCcccCCCcceEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 555 57999999 632 3564322222 456899988888999999999999988765
No 95
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=75.31 E-value=4.6 Score=47.67 Aligned_cols=167 Identities=19% Similarity=0.273 Sum_probs=97.4
Q ss_pred hhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChH
Q 001944 51 HLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGM 130 (993)
Q Consensus 51 ~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~ 130 (993)
.|=++|..+=.+++++||||+.+-..+. + .+..+||.-- +.|+|+||.-=. .|-|+
T Consensus 99 ~lE~SK~faK~fm~k~~IPta~y~~f~~--~-------e~a~ayi~~~----g~piVVKadGLa-----------aGKGV 154 (428)
T COG0151 99 QLEGSKAFAKDFMKKYGIPTAEYEVFTD--P-------EEAKAYIDEK----GAPIVVKADGLA-----------AGKGV 154 (428)
T ss_pred HHHhhHHHHHHHHHHcCCCcccccccCC--H-------HHHHHHHHHc----CCCEEEeccccc-----------CCCCe
Confidence 4667888899999999999998887764 1 2355666523 469999993222 34455
Q ss_pred HHHHhhcCCCccccccccc---ccc-cCcceEEeeccCCCCceeEEEEECCceeE---E--EeeeCCCCCCeeeecCCCC
Q 001944 131 KELFRKVGNRSSEFHPDVR---RVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAH---A--EARKSPVVDGVVMRNPDGK 201 (993)
Q Consensus 131 ~rLfrkign~sS~~~p~~~---~~r-~~gsyIyEEFi~t~G~DIKVytVG~~~vh---A--e~RKSP~vDG~vrrN~~gk 201 (993)
. +...+..+....+ +.. .+. .....+.|||+.-.=--+=|+|=|..++- | -.| +.||+-=-|+-|=
T Consensus 155 ~-V~~~~eeA~~a~~-~~l~~~~fg~~g~~VVIEEfL~GeE~S~~a~~DG~~v~p~p~aQDhKr---a~dgD~GPNTGGM 229 (428)
T COG0151 155 I-VAMTLEEAEAAVD-EMLEGNAFGSAGARVVIEEFLDGEEFSLQAFVDGKTVIPMPTAQDHKR---AYDGDTGPNTGGM 229 (428)
T ss_pred E-EcCCHHHHHHHHH-HHHhhccccCCCCcEEEEecccceEEEEEEEEcCCeEEECcccccccc---ccCCCCCCCCCCC
Confidence 3 2222111100000 000 111 12468999999754455556666655431 1 123 2488877888876
Q ss_pred ceeeeee-CCHHHHH-----HHHHHHHHh---CCceeEE---EEEeeCCCcEEEecc
Q 001944 202 EVRYPVL-LTPNEKQ-----MAREVCIAF---RQAVCGF---DLLRCEGRSYVCDVN 246 (993)
Q Consensus 202 e~r~~v~-Lt~eEk~-----iA~ka~~af---gq~VcGf---DLLRs~g~syV~DVN 246 (993)
+.=.|+. +|++.-+ |...+.+++ |-.++|| =|+-+.++|+|+|.|
T Consensus 230 Gaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~GPkViEfN 286 (428)
T COG0151 230 GAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFN 286 (428)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCCcEEEEEe
Confidence 6555443 4555333 333444444 4457777 344566789999999
No 96
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=74.97 E-value=1.5 Score=47.99 Aligned_cols=54 Identities=24% Similarity=0.573 Sum_probs=27.8
Q ss_pred cEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC----CC--ceeEEEEEC
Q 001944 105 PFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT----GG--TDVKVYTVG 176 (993)
Q Consensus 105 PfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t----~G--~DIKVytVG 176 (993)
-+|.||..|. +|-|.. |++... .+.. ......+.||+|+||+. +| -|||+||+=
T Consensus 67 ~wI~KP~~~~-----------rG~GI~-l~~~~~----~i~~--~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlv 126 (292)
T PF03133_consen 67 LWIVKPSNGS-----------RGRGIK-LFNNLE----QILR--FSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLV 126 (292)
T ss_dssp -EEEEES------------------EE-EES-HH----HHHC--CHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE
T ss_pred EEEEeccccC-----------CCCCce-ecCCHH----HHHH--HhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEE
Confidence 5899998887 666663 665442 1110 01236899999999975 67 799999873
No 97
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=74.70 E-value=4.2 Score=50.16 Aligned_cols=178 Identities=21% Similarity=0.263 Sum_probs=111.7
Q ss_pred CcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccC
Q 001944 46 ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSS 125 (993)
Q Consensus 46 dl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~ 125 (993)
+.+-..-+-||-.+-++--++|||+= -..++|-+ ...|..+++. ..+.|+|+|..-|-
T Consensus 138 speVi~~mGDKv~AR~~Ai~agVpvV----PGTpgPit---t~~EA~eF~k----~yG~PvI~KAAyGG----------- 195 (1176)
T KOG0369|consen 138 SPEVIDSMGDKVAARAIAIEAGVPVV----PGTPGPIT---TVEEALEFVK----EYGLPVIIKAAYGG----------- 195 (1176)
T ss_pred CHHHHHHhhhHHHHHHHHHHcCCCcc----CCCCCCcc---cHHHHHHHHH----hcCCcEEEeecccC-----------
Confidence 34455667889888888889999952 22334422 2223333333 23479999998875
Q ss_pred CCChHHHHHhhcCCCcccccccccc---cccCcceEEeeccCCCCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCC
Q 001944 126 AGGGMKELFRKVGNRSSEFHPDVRR---VRREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPD 199 (993)
Q Consensus 126 ~GgG~~rLfrkign~sS~~~p~~~~---~r~~gsyIyEEFi~t~G~DIKVytVG~---~~vhAe~RKSP~vDG~vrrN~~ 199 (993)
||-+.|..|+...-...|.-...+ -=.+|+..+|.|++. -+-|-|-..|+ +++|--.|-+-| -||--.
T Consensus 196 -GGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ek-PrHIEvQllgD~~GNvvHLyERDCSv----QRRHQK 269 (1176)
T KOG0369|consen 196 -GGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEK-PRHIEVQLLGDKHGNVVHLYERDCSV----QRRHQK 269 (1176)
T ss_pred -CCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcC-cceeEEEEecccCCCEEEEeecccch----hhhhcc
Confidence 332335666554332222211110 116899999999987 56677777774 679999997742 233333
Q ss_pred CCceeeeeeCCHHHHH----HHHHHHHHhCCceeE-EEEEee-CCCcEEEeccCcccc
Q 001944 200 GKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRC-EGRSYVCDVNGWSFV 251 (993)
Q Consensus 200 gke~r~~v~Lt~eEk~----iA~ka~~afgq~VcG-fDLLRs-~g~syV~DVNGwSFV 251 (993)
==|++-.-.|.++-++ =|.|+++..|-.=+| +..|-. +|+-|.+|||--=-|
T Consensus 270 VVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQV 327 (1176)
T KOG0369|consen 270 VVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQV 327 (1176)
T ss_pred eeEecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccCCCEEEEEecCceee
Confidence 3355555556665543 478999999987777 566665 678999999976555
No 98
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=70.17 E-value=7.6 Score=47.39 Aligned_cols=182 Identities=14% Similarity=0.169 Sum_probs=113.2
Q ss_pred cccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEE
Q 001944 42 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 121 (993)
Q Consensus 42 ~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IY 121 (993)
|+==+..++..+-||..+=.+..+.|||+=.- . ...+++.+.+.--..++++|+.+|..-|-
T Consensus 102 fIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG----~-------~g~~qd~~~~~~~A~eiGyPVlIKAsaGG------- 163 (645)
T COG4770 102 FIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPG----Y-------HGPIQDAAELVAIAEEIGYPVLIKASAGG------- 163 (645)
T ss_pred EECCCHHHHHHhccHHHHHHHHHHcCCCccCC----C-------CCcccCHHHHHHHHHhcCCcEEEEeccCC-------
Confidence 33445678889999999999999999995221 1 11233445554455678899999997664
Q ss_pred eccCCCChHHHHHhhcCCCccccccccc---ccccCcceEEeeccCCCCceeEEEEEC---CceeEEEeeeCCCCCCeee
Q 001944 122 YPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVM 195 (993)
Q Consensus 122 yp~~~GgG~~rLfrkign~sS~~~p~~~---~~r~~gsyIyEEFi~t~G~DIKVytVG---~~~vhAe~RKSP~vDG~vr 195 (993)
-|-|+ |+.++...-...|..--. .-=-++..+.|.|+.. -+-|-|=|.| ++++|.=+|-+- .=|
T Consensus 164 ----GGKGM-Rvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~-PRHIEiQV~aD~HGNvv~LgERdCS----lQR 233 (645)
T COG4770 164 ----GGKGM-RVVETPEEFAEALESARREAKASFGDDRVFIEKYLDK-PRHIEIQVFADQHGNVVHLGERDCS----LQR 233 (645)
T ss_pred ----CCCce-EeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCC-CceEEEEEEecCCCCEEEeeccccc----hhh
Confidence 22243 344443322222221000 0014777899999988 4555555555 467899899874 246
Q ss_pred ecCCCCceeeeeeCCHHHH----HHHHHHHHHhCCceeE-EEEEee-CCCcEEEeccCcccc
Q 001944 196 RNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAVCG-FDLLRC-EGRSYVCDVNGWSFV 251 (993)
Q Consensus 196 rN~~gke~r~~v~Lt~eEk----~iA~ka~~afgq~VcG-fDLLRs-~g~syV~DVNGwSFV 251 (993)
||--==|-+-.=-||++.+ +-|.++|++.|--=+| |..|-. ++..|.+|+|--=-|
T Consensus 234 RhQKVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQV 295 (645)
T COG4770 234 RHQKVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQV 295 (645)
T ss_pred hcchhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcEEEEEeecceec
Confidence 6654444444445777665 3589999999976666 555555 445778888865444
No 99
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=70.06 E-value=4.1 Score=39.12 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.2
Q ss_pred ccceEeecCCchHHHHHHHHHHhhc
Q 001944 478 HDLKIYSSDEGRVQMSAAAFAKGLL 502 (993)
Q Consensus 478 hDlKIysSdEgRVq~TAaaFakg~L 502 (993)
.-..||||+-.||+.||++|++++.
T Consensus 47 ~~~~v~sSp~~R~~~Ta~~~~~~~~ 71 (153)
T cd07040 47 KFDRIYSSPLKRAIQTAEIILEGLF 71 (153)
T ss_pred CCCEEEECChHHHHHHHHHHHHHhc
Confidence 3457999999999999999999985
No 100
>KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]
Probab=67.71 E-value=5.5 Score=46.73 Aligned_cols=52 Identities=27% Similarity=0.307 Sum_probs=38.4
Q ss_pred hhHHHhhc--cCCCCcchhhhhhcccccceEeecCCchHHHHHHHHHHhhccCCCC
Q 001944 454 NEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQ 507 (993)
Q Consensus 454 e~LG~~fR--Yp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~lege 507 (993)
-+||+.+| |=-.+ ++| -..=-+.++.|+|||=-|+.|||++..+||+.-++.
T Consensus 80 ~~LG~~LR~rYvr~~-~fL-~~~y~~~ev~iRStd~nRtl~SAqs~laGlfp~~~~ 133 (411)
T KOG3720|consen 80 FELGRFLRKRYVRYG-NFL-SPKYNPKEVYIRSTDVNRTLMSAQSVLAGLFPPEGR 133 (411)
T ss_pred HHHHHHHHHHHhhcc-ccC-CcccCcceEEEecCCccHHHHHHHHHHHhhCCCCCC
Confidence 37999998 42111 121 111227899999999999999999999999998754
No 101
>KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]
Probab=66.92 E-value=3.7 Score=48.16 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=25.9
Q ss_pred cccccceEEEEecCCCCCCCCCeeEEEEEecCCCCCCCC
Q 001944 867 DYMSYIVLRMFENTAVALEDPKRFRIELTFSRGADLSPL 905 (993)
Q Consensus 867 dYlSqIvf~lYE~~~~~~~~~~rf~Iei~~SpG~~~~pl 905 (993)
.|-+.|.||+|++.+ ..+.|+|.+.-..+..|+
T Consensus 317 ~yas~i~iEl~~~~~------~~~~vk~~yr~~~~~~~~ 349 (411)
T KOG3720|consen 317 PYASAIAIELHRNKG------GKPYVKLLYRNDEHSEPV 349 (411)
T ss_pred chHHHhHhhheecCC------CCEEEEEEEecCCCCCce
Confidence 588999999999985 678888888766654444
No 102
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=66.33 E-value=17 Score=42.83 Aligned_cols=65 Identities=25% Similarity=0.400 Sum_probs=46.4
Q ss_pred cEEEeeccc-cCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC---CCc--eeEEEEECCc
Q 001944 105 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---GGT--DVKVYTVGPE 178 (993)
Q Consensus 105 PfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t---~G~--DIKVytVG~~ 178 (993)
.+|.||+-| |.-||-|+-+ |+. +.+.-| .| .+..+|||+|.+- +|. =|=+++||++
T Consensus 309 ~yV~KPi~gREG~nV~i~~~----g~~--~~~~~g----~y--------~~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~ 370 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEY----GGE--SEDTDG----NY--------AEEPRVVQQLIEWGRFDGCYPMIGVWMVGSE 370 (397)
T ss_pred CEEeccCCCcCCCCEEEEEC----CeE--EeccCC----CC--------CCCCeEEEEccCCcccCCcEEEEEEEEECCE
Confidence 499999999 8778887753 222 221111 12 2577899999975 453 3778999999
Q ss_pred eeEEEeeeC
Q 001944 179 YAHAEARKS 187 (993)
Q Consensus 179 ~vhAe~RKS 187 (993)
+|.---|.+
T Consensus 371 ~aGlgiRe~ 379 (397)
T PHA02117 371 AAGLCIRED 379 (397)
T ss_pred eeEEEEecC
Confidence 999999987
No 103
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=64.22 E-value=4.8 Score=47.74 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=37.4
Q ss_pred eeEEEeecchhHHHHHHHHHhc-CCcccccccchhhhhhhhhhhcCCCCCcccccceEEEEecCCCCCCCCCee-EEEEE
Q 001944 818 RTRLYFTSESHIHSLMNVLRYC-NLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENTAVALEDPKRF-RIELT 895 (993)
Q Consensus 818 RtrlYFTsESHIhsLLNvlr~~-~l~~~~~~e~~~i~~~a~~~l~~i~ELdYlSqIvf~lYE~~~~~~~~~~rf-~Iei~ 895 (993)
|-.+|.--.|.|-+|+++|..- .|+.. ...+| +=+-+|||+|++.+ +.++| +|++.
T Consensus 322 kl~~lvGHDTNIA~l~~~L~~~w~lp~q---------------~~~tP---pGg~LvFErw~d~~----~~~~~vrv~~~ 379 (436)
T PRK10172 322 SVLFIAGHDTNLANLGGALELNWTLPGQ---------------PDNTP---PGGELVFERWRRLS----DNSQWIQVSLV 379 (436)
T ss_pred eEEEEEecchhHHHHHHHhCCCccCCCC---------------CCCCC---CcceEEEEEEeeCC----CCceEEEEEEE
Confidence 6789999999999999999641 12221 11222 24889999999863 34554 77753
No 104
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=62.70 E-value=4.1 Score=46.89 Aligned_cols=42 Identities=31% Similarity=0.454 Sum_probs=29.0
Q ss_pred HHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeecc-CcEEEeec
Q 001944 57 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFW-KPFVEKPV 111 (993)
Q Consensus 57 ~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~-kPfVeKpv 111 (993)
..+.++|++.|||+|++.++.. + ++....- ..++ +|+|+||.
T Consensus 6 ~~aK~ll~~~GIpvp~~~~~~~--~----------~ea~~~~-~~ig~~PvVvK~~ 48 (386)
T TIGR01016 6 YQAKQIFAKYGIPVPRGYVATS--V----------EEAEEIA-AKLGAGPVVVKAQ 48 (386)
T ss_pred HHHHHHHHHcCCCCCCceeeCC--H----------HHHHHHH-HHhCCCcEEEEec
Confidence 4577899999999999998854 1 1222111 1245 79999997
No 105
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=56.65 E-value=4.5 Score=43.82 Aligned_cols=47 Identities=36% Similarity=0.456 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc
Q 001944 55 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 114 (993)
Q Consensus 55 DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge 114 (993)
+-..++++|+..|||+|++.++.. .++.... -..+++|+|.|.++-.
T Consensus 11 ~e~e~~~lL~~yGI~~~~~~~~~~------------~~ea~~~-a~~ig~PvvlKi~sp~ 57 (222)
T PF13549_consen 11 TEAEAKELLAAYGIPVPPTRLVTS------------AEEAVAA-AEEIGFPVVLKIVSPD 57 (222)
T ss_dssp -HHHHHHHHHTTT------EEESS------------HHHHHHH-HHHH-SSEEEEEE-TT
T ss_pred CHHHHHHHHHHcCcCCCCeeEeCC------------HHHHHHH-HHHhCCCEEEEEecCC
Confidence 346799999999999999999976 2233331 1235689999999864
No 106
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=53.66 E-value=6.5 Score=45.34 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeec-cCcEEEeec
Q 001944 56 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRF-WKPFVEKPV 111 (993)
Q Consensus 56 R~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~-~kPfVeKpv 111 (993)
-..+.++|+++|||+|++.++.. .++....- ..+ ++|+|+||.
T Consensus 5 e~~ak~lL~~~gIpvp~~~~~~~------------~~ea~~~a-~~i~g~PvVvK~~ 48 (388)
T PRK00696 5 EYQAKELFAKYGVPVPRGIVATT------------PEEAVEAA-EELGGGVWVVKAQ 48 (388)
T ss_pred HHHHHHHHHHcCCCCCCCeeeCC------------HHHHHHHH-HHcCCCcEEEEEe
Confidence 34677899999999999998865 12333221 123 689999996
No 107
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=52.50 E-value=10 Score=44.73 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=40.3
Q ss_pred cch--hhHHHhhc-cCCCCcchhhhhhc-ccccceEeecCCchHHHHHHHHHHhhccCCC
Q 001944 451 NGV--NEIAYWWG-SHSEGTGLLRLHST-YRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 506 (993)
Q Consensus 451 GGE--e~LG~~fR-Yp~~~~gLLrLhst-~rhDlKIysSdEgRVq~TAaaFakg~L~leg 506 (993)
|++ ..+|+.+| |-. ..|||--+-- --.++.+||++--|.+.||++|+.||.--.+
T Consensus 75 G~~~~~~~G~~~r~~~~-~~~ll~~~~cp~~~~v~~~a~~~~RT~~Sa~afl~Gl~P~c~ 133 (413)
T PRK10173 75 GGVLEVYMGHYMREWLA-QQGLVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCD 133 (413)
T ss_pred HHHHHHHHHHHHHHHHH-HcCCCCCCCCCCcCeEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 666 67999999 322 3566532210 1247999999999999999999999987654
No 108
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=51.86 E-value=38 Score=42.22 Aligned_cols=66 Identities=26% Similarity=0.377 Sum_probs=46.5
Q ss_pred cEEEeeccc-cCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC---CC--ceeEEEEECCc
Q 001944 105 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---GG--TDVKVYTVGPE 178 (993)
Q Consensus 105 PfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t---~G--~DIKVytVG~~ 178 (993)
.+|.||+-| |.-||-|+-+. |. .+-+.-| .|. +..+|||+|.+- +| .=|=+++||++
T Consensus 529 ~yV~KPi~GREG~nV~i~~~~----g~-~~~~~~g----~y~--------~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~ 591 (619)
T PRK10507 529 GYAVKPIAGRCGSNIDLVSHQ----EE-VLDKTSG----KFA--------EQKNIYQQLWCLPKVDGKYIQVCTFTVGGN 591 (619)
T ss_pred CeEeccCCCcCCCCEEEEeCC----Cc-EeeccCC----CCC--------CCCeEEEEeccCcccCCCEEEEEEEEECCE
Confidence 599999999 87888888542 21 1212112 122 567899999975 22 34778999999
Q ss_pred eeEEEeeeC
Q 001944 179 YAHAEARKS 187 (993)
Q Consensus 179 ~vhAe~RKS 187 (993)
++..--|.+
T Consensus 592 ~aG~giRed 600 (619)
T PRK10507 592 YGGTCLRGD 600 (619)
T ss_pred EEEEEEecC
Confidence 999999987
No 109
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=49.24 E-value=14 Score=35.58 Aligned_cols=21 Identities=43% Similarity=0.479 Sum_probs=19.2
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||.-.||+-||+++++++
T Consensus 50 ~i~~Sp~~R~~qTA~~~~~~~ 70 (158)
T PF00300_consen 50 VIYSSPLRRCIQTAEIIAEGL 70 (158)
T ss_dssp EEEEESSHHHHHHHHHHHHHH
T ss_pred EEecCCcchhhhhhchhhccc
Confidence 399999999999999999954
No 110
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=42.62 E-value=28 Score=41.74 Aligned_cols=132 Identities=23% Similarity=0.337 Sum_probs=69.9
Q ss_pred HHHHhhcCCcccCCcchh--------hhhhhHHHHH------HHHHhCCCCCCCEEEEeccCCCccccccccccceee--
Q 001944 33 ESYATLRKPFLVNELEPQ--------HLLHDRRKVY------EQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-- 96 (993)
Q Consensus 33 i~y~~lr~p~~iNdl~~q--------~ll~DR~~v~------qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~-- 96 (993)
|+-.+-+...+||++.+| .+|||-+... +-+-+.. +|-|..+.... . ..--+.-|.++
T Consensus 261 i~Ay~~~av~~vgsfrs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~H--vP~T~~l~~~~-~---~~~g~~~dL~~~~ 334 (445)
T PF14403_consen 261 IQAYRDGAVCMVGSFRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRH--VPWTRLLTAGR-T---TYQGEDVDLVEFA 334 (445)
T ss_pred HHHHhcCCeEEecchhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHh--CCceEEEcCcc-c---cccccchhHHHHH
Confidence 444566777889998886 3444443322 1122222 45666664410 0 00000112221
Q ss_pred ecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc--ccc--cCcceEEeeccCC-------
Q 001944 97 VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR--RVR--REGSYIYEEFMPT------- 165 (993)
Q Consensus 97 v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~--~~r--~~gsyIyEEFi~t------- 165 (993)
+.. ..-+|+||.++- .|.|+- +| -+++++-. .++ .++.||+|||+..
T Consensus 335 ~a~---r~~lVLKP~D~Y-----------gg~GV~-----~G---~e~~~eeW~~~l~~a~~~~yilQe~v~~~~~~~~~ 392 (445)
T PF14403_consen 335 IAN---RDRLVLKPNDEY-----------GGKGVY-----IG---WETSPEEWEAALEEAAREPYILQEYVRPPREPMPA 392 (445)
T ss_pred Hhc---hhcEEecccccc-----------CCCCeE-----EC---CcCCHHHHHHHHHHHhcCCcEEEEEecCCcccccc
Confidence 111 246999999985 333332 33 23333322 121 3569999999864
Q ss_pred --CCc--------eeEEEEECCceeEEEeeeCCCCCCee
Q 001944 166 --GGT--------DVKVYTVGPEYAHAEARKSPVVDGVV 194 (993)
Q Consensus 166 --~G~--------DIKVytVG~~~vhAe~RKSP~vDG~v 194 (993)
+|+ ++=.|+-|++++.+-+|-|+ .+..
T Consensus 393 ~~dg~~~~~~~~~~~g~fly~~~~~G~~tR~g~--~~vi 429 (445)
T PF14403_consen 393 FEDGEVVFEEYPYDSGPFLYGGKFAGCYTRLGT--GNVI 429 (445)
T ss_pred ccCCceeEeeeeeeccceeECCEEEEEEEEecc--CCce
Confidence 121 22348888999999999995 4444
No 111
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=42.14 E-value=18 Score=36.35 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=18.9
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||.-.|++.||+++++.+
T Consensus 46 ~i~sSpl~Ra~qTA~~i~~~~ 66 (177)
T TIGR03162 46 AVYSSPLSRCRELAEILAERR 66 (177)
T ss_pred EEEECchHHHHHHHHHHHhhc
Confidence 499999999999999998753
No 112
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=41.55 E-value=19 Score=35.02 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=20.0
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||.-.|++.||+++++++
T Consensus 50 ~i~~Sp~~Ra~qTa~~l~~~~ 70 (153)
T cd07067 50 RIYSSPLKRAIQTAEIILEEL 70 (153)
T ss_pred EEEECcHHHHHHHHHHHHHhc
Confidence 699999999999999999987
No 113
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=41.06 E-value=11 Score=44.49 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCCCCCEEEEec
Q 001944 57 RKVYEQLEKYGIPVPRYALVNR 78 (993)
Q Consensus 57 ~~v~qiL~~~gIP~P~t~~~~r 78 (993)
..+.++|++.|||+|+..++..
T Consensus 33 yqaK~LL~~~GIpvp~~~va~t 54 (422)
T PLN00124 33 YQGAELMSKYGVNVPKGAAASS 54 (422)
T ss_pred HHHHHHHHHcCCCCCCceeeCC
Confidence 4578999999999999999866
No 114
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=37.55 E-value=38 Score=30.11 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=30.2
Q ss_pred eeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCc
Q 001944 194 VMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA 227 (993)
Q Consensus 194 vrrN~~gke~r~~v~Lt~eEk~iA~ka~~afgq~ 227 (993)
|+.+...-+..+|..||++|+.+.-.+|.-+|+.
T Consensus 11 Fkdd~~~~eL~Fp~~ls~~eRriih~la~~lGL~ 44 (60)
T cd02639 11 FKDDRMRDELAFPSSLSPAERRIVHLLASRLGLN 44 (60)
T ss_pred EecCCCceEEEcCCCCCHHHHHHHHHHHHHcCCc
Confidence 5555568899999999999999999999999986
No 115
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=37.45 E-value=17 Score=42.55 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCCCCCEEEEec
Q 001944 58 KVYEQLEKYGIPVPRYALVNR 78 (993)
Q Consensus 58 ~v~qiL~~~gIP~P~t~~~~r 78 (993)
.+.++|++.|||+|++.++..
T Consensus 7 eak~lL~~yGIpvp~~~~~~~ 27 (392)
T PRK14046 7 QAKELLASFGVAVPRGALAYS 27 (392)
T ss_pred HHHHHHHHcCCCCCCceEECC
Confidence 467899999999999999966
No 116
>PRK03482 phosphoglycerate mutase; Provisional
Probab=34.98 E-value=29 Score=36.46 Aligned_cols=20 Identities=40% Similarity=0.498 Sum_probs=18.6
Q ss_pred eEeecCCchHHHHHHHHHHh
Q 001944 481 KIYSSDEGRVQMSAAAFAKG 500 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg 500 (993)
.||||.-.|++-||+++++.
T Consensus 50 ~I~sSpl~Ra~qTA~~i~~~ 69 (215)
T PRK03482 50 HIISSDLGRTRRTAEIIAQA 69 (215)
T ss_pred EEEECCcHHHHHHHHHHHHh
Confidence 69999999999999999875
No 117
>PRK13463 phosphatase PhoE; Provisional
Probab=34.16 E-value=29 Score=36.36 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=18.1
Q ss_pred eEeecCCchHHHHHHHHHHh
Q 001944 481 KIYSSDEGRVQMSAAAFAKG 500 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg 500 (993)
.||||+-.|++-||++++..
T Consensus 51 ~i~sSpl~Ra~qTA~~i~~~ 70 (203)
T PRK13463 51 AIYSSPSERTLHTAELIKGE 70 (203)
T ss_pred EEEECCcHHHHHHHHHHHhc
Confidence 59999999999999999763
No 118
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=33.67 E-value=32 Score=40.67 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=33.1
Q ss_pred eeEEEeecchhHHHHHHHHHhcCCcc-cccccchhhhhhhhhhhcCCCCCcccccceEEEEecC
Q 001944 818 RTRLYFTSESHIHSLMNVLRYCNLDE-SLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENT 880 (993)
Q Consensus 818 RtrlYFTsESHIhsLLNvlr~~~l~~-~~~~e~~~i~~~a~~~l~~i~ELdYlSqIvf~lYE~~ 880 (993)
|-.+||.-.|.|.+|++.|- +.. .+- .....--|=+.|+||+|.+.
T Consensus 304 Kl~lysgHDtnIa~ll~ALg---l~~~~lP--------------~~~~~~P~g~~LvFEl~~d~ 350 (413)
T PRK10173 304 KVTVLVGHDSNIASLLTALD---FKPYQLH--------------DQYERTPIGGKIVFQRWHDS 350 (413)
T ss_pred CEEEEEEccccHHHHHHHhC---CCccccC--------------CCCCcCCccceEEEEEEEeC
Confidence 56899999999999999983 321 110 01134568899999999976
No 119
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=31.75 E-value=19 Score=38.64 Aligned_cols=42 Identities=38% Similarity=0.579 Sum_probs=25.2
Q ss_pred HHHHHHHhCCCCCCCEEEEeccCCCccccccccccceee-ecCeeccCcEEEeecc
Q 001944 58 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVH 112 (993)
Q Consensus 58 ~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~-v~g~~~~kPfVeKpv~ 112 (993)
.+-++|.++|||+|+..++... . |..+... +++ +++|+|+.-
T Consensus 6 qaK~ll~~~gi~vp~g~~a~s~--e-------ea~~~~~~l~~----~~~VvKaQv 48 (202)
T PF08442_consen 6 QAKELLRKYGIPVPRGVVATSP--E-------EAREAAKELGG----KPLVVKAQV 48 (202)
T ss_dssp HHHHHHHCTT----SEEEESSH--H-------HHHHHHHHHTT----SSEEEEE-S
T ss_pred HHHHHHHHcCCCCCCeeecCCH--H-------HHHHHHHHhCC----CcEEEEEeE
Confidence 4568999999999999999772 1 1223332 443 589999964
No 120
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=31.37 E-value=34 Score=35.45 Aligned_cols=24 Identities=38% Similarity=0.256 Sum_probs=20.6
Q ss_pred ceEeecCCchHHHHHHHHHHhhcc
Q 001944 480 LKIYSSDEGRVQMSAAAFAKGLLD 503 (993)
Q Consensus 480 lKIysSdEgRVq~TAaaFakg~L~ 503 (993)
-.||||+-.|++.||++.|+.+--
T Consensus 52 ~~i~sS~l~Ra~~TA~~~a~~~~~ 75 (208)
T COG0406 52 DAIYSSPLKRAQQTAEPLAEELGL 75 (208)
T ss_pred CEEEECchHHHHHHHHHHHHhcCC
Confidence 348999999999999999987643
No 121
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=31.24 E-value=36 Score=33.48 Aligned_cols=21 Identities=43% Similarity=0.382 Sum_probs=19.0
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||.-.|++-||+++++.+
T Consensus 51 ~i~sSpl~Ra~qTa~~i~~~~ 71 (155)
T smart00855 51 VIYSSPLLRARETAEALAIAL 71 (155)
T ss_pred EEEeCchHHHHHHHHHHHHhc
Confidence 499999999999999998765
No 122
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=29.33 E-value=39 Score=36.52 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=19.5
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++-||+++++++
T Consensus 39 ~iysSpl~Ra~qTA~~i~~~~ 59 (236)
T PTZ00123 39 VVYTSVLKRAIKTAWIVLEEL 59 (236)
T ss_pred EEEECChHHHHHHHHHHHHhc
Confidence 699999999999999999766
No 123
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=28.97 E-value=38 Score=35.21 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=18.6
Q ss_pred eEeecCCchHHHHHHHHHHh
Q 001944 481 KIYSSDEGRVQMSAAAFAKG 500 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg 500 (993)
+||||.-.|++-||++++++
T Consensus 49 ~i~sSpl~Ra~qTA~~i~~~ 68 (199)
T PRK15004 49 LVLCSELERAQHTARLVLSD 68 (199)
T ss_pred EEEECchHHHHHHHHHHHhc
Confidence 49999999999999999875
No 124
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=28.37 E-value=40 Score=35.06 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=19.2
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++-||+++++.+
T Consensus 49 ~i~sSpl~Ra~qTA~~i~~~~ 69 (204)
T TIGR03848 49 AIVSSPLERCRETAEPIAEAR 69 (204)
T ss_pred EEEeCcHHHHHHHHHHHHHhc
Confidence 599999999999999999865
No 125
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=27.84 E-value=46 Score=33.63 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=19.8
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||.=.|++.||+++++.+
T Consensus 47 ~i~sSp~~Ra~qTa~~l~~~~ 67 (152)
T TIGR00249 47 RILVSPFVRAEQTAEIVGDCL 67 (152)
T ss_pred EEEECCcHHHHHHHHHHHHHc
Confidence 699999999999999999886
No 126
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.57 E-value=14 Score=44.77 Aligned_cols=74 Identities=19% Similarity=0.437 Sum_probs=48.3
Q ss_pred CCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc
Q 001944 70 VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR 149 (993)
Q Consensus 70 ~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~ 149 (993)
+|+++++-.| ..+.-++.+-+..+. +|+||-..- .|.|.+ ..+|.+
T Consensus 283 mPrtyilP~d--------~e~lrk~w~~nasr~---wIVkppasa-----------Rg~gIr-v~~kw~----------- 328 (662)
T KOG2156|consen 283 MPRTYILPAD--------REELRKYWEKNASRL---WIVKPPASA-----------RGIGIR-VINKWS----------- 328 (662)
T ss_pred cceeeecccc--------HHHHHHHHhhCcccc---EEecCcccc-----------cCcceE-eccchh-----------
Confidence 5777776442 223344555455444 888886665 688884 666664
Q ss_pred ccccCcceEEeeccCC----CC--ceeEEEEECC
Q 001944 150 RVRREGSYIYEEFMPT----GG--TDVKVYTVGP 177 (993)
Q Consensus 150 ~~r~~gsyIyEEFi~t----~G--~DIKVytVG~ 177 (993)
...++...++|+||+. +| .|+|+|++=.
T Consensus 329 q~pk~rpLvvQ~yieRP~ling~KFDlrlYv~vt 362 (662)
T KOG2156|consen 329 QFPKDRPLVVQKYIERPLLINGSKFDLRLYVVVT 362 (662)
T ss_pred hCCCcccHHHHHHhhcceeecCcceeEEEEEEEe
Confidence 3446777889999975 44 8999998743
No 127
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=25.67 E-value=24 Score=40.30 Aligned_cols=83 Identities=18% Similarity=0.146 Sum_probs=47.9
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccC--cceEEeeccCCCCc
Q 001944 91 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRRE--GSYIYEEFMPTGGT 168 (993)
Q Consensus 91 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~--gsyIyEEFi~t~G~ 168 (993)
.++.|+=--+.++.|+|.||+.|+ +|.|.+-..+.+-+....-.+.-..+..+ -+.+.|+|. .|.
T Consensus 75 EDg~iqg~le~~giPyvg~gv~~S-----------a~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~--~~l 141 (317)
T COG1181 75 EDGTIQGLLELLGIPYVGKGVLAS-----------AGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVE--EGL 141 (317)
T ss_pred CCchHHHHHHHhCCCEecCchhhh-----------hhcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhh--ccc
Confidence 444554222345689999999999 88776533332222222222211122222 334444443 478
Q ss_pred eeEEEEECCceeEEEeee
Q 001944 169 DVKVYTVGPEYAHAEARK 186 (993)
Q Consensus 169 DIKVytVG~~~vhAe~RK 186 (993)
|-++||.+.+...+--|.
T Consensus 142 ~~p~~Vkp~~~gSSvg~~ 159 (317)
T COG1181 142 GFPLFVKPAREGSSVGRS 159 (317)
T ss_pred CCCEEEEcCCccceeeEE
Confidence 899999999998888773
No 128
>PRK01295 phosphoglyceromutase; Provisional
Probab=23.14 E-value=62 Score=34.24 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.1
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+=.|++-||++++..+
T Consensus 53 ~i~sSpl~Ra~qTA~~i~~~~ 73 (206)
T PRK01295 53 IAFTSALSRAQHTCQLILEEL 73 (206)
T ss_pred EEEeCCcHHHHHHHHHHHHHc
Confidence 599999999999999998754
No 129
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=22.78 E-value=62 Score=35.41 Aligned_cols=21 Identities=19% Similarity=0.033 Sum_probs=18.9
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+=.|++.||++++..+
T Consensus 51 ~IysSpl~Ra~qTA~~i~~~~ 71 (247)
T PRK14115 51 VAYTSVLKRAIRTLWIVLDEL 71 (247)
T ss_pred EEEEcCCHHHHHHHHHHHHHc
Confidence 699999999999999998654
No 130
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=22.67 E-value=96 Score=34.15 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=19.5
Q ss_pred ceeEEEEEee-CCCcEEEeccCccccccccc
Q 001944 227 AVCGFDLLRC-EGRSYVCDVNGWSFVKNSYK 256 (993)
Q Consensus 227 ~VcGfDLLRs-~g~syV~DVNGwSFVK~n~k 256 (993)
.+-|||+|-. +.+|+++|||.-+=......
T Consensus 237 el~G~DfmlD~~~kpwLLEvN~~Psl~~~~~ 267 (292)
T PF03133_consen 237 ELFGFDFMLDEDLKPWLLEVNSNPSLSTSTP 267 (292)
T ss_dssp EEEEEEEEEBTTS-EEEEEEESS------TT
T ss_pred ceeeeEEEecCCCeEEEeeCCCCCCcccCCH
Confidence 4789999988 67899999998853344444
No 131
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=21.91 E-value=72 Score=36.10 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.9
Q ss_pred eEeecCCchHHHHHHHHHHhhc
Q 001944 481 KIYSSDEGRVQMSAAAFAKGLL 502 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~L 502 (993)
.||||+=.|++.||++++.++.
T Consensus 156 ~IysSPL~RA~qTAeiIa~~~~ 177 (299)
T PTZ00122 156 AIYHSDMTRAKETAEIISEAFP 177 (299)
T ss_pred EEEEcCcHHHHHHHHHHHHhCC
Confidence 5999999999999999997764
No 132
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=20.58 E-value=70 Score=34.35 Aligned_cols=20 Identities=15% Similarity=0.021 Sum_probs=18.2
Q ss_pred eEeecCCchHHHHHHHHHHh
Q 001944 481 KIYSSDEGRVQMSAAAFAKG 500 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg 500 (993)
.||||+=.|++.||++++.+
T Consensus 52 ~i~sSpL~Ra~qTA~~i~~~ 71 (228)
T PRK14116 52 QAYTSVLTRAIKTLHYALEE 71 (228)
T ss_pred EEEECChHHHHHHHHHHHHh
Confidence 59999999999999999765
No 133
>KOG1382 consensus Multiple inositol polyphosphate phosphatase [General function prediction only]
Probab=20.54 E-value=82 Score=38.06 Aligned_cols=30 Identities=33% Similarity=0.314 Sum_probs=26.0
Q ss_pred eEeecCCchHHHHHHHHHHhhccCCCCCCc
Q 001944 481 KIYSSDEGRVQMSAAAFAKGLLDLEGQLTP 510 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~L~legeLtP 510 (993)
-|+++.--||..||++||-||.+-.+-.-|
T Consensus 162 ~i~tt~~~R~~dSA~~F~~GLfg~~~~~~t 191 (467)
T KOG1382|consen 162 NINTTASQRVVDSAQAFAYGLFGEDHFNIT 191 (467)
T ss_pred EeeccchHHHHHHHHHHHhhhccccccCCC
Confidence 488999999999999999999987666555
Done!