Query 001944
Match_columns 993
No_of_seqs 218 out of 442
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 05:42:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t7a_A Inositol pyrophosphate 100.0 1E-102 4E-107 841.4 22.9 278 7-291 49-326 (330)
2 1i7n_A Synapsin II; synapse, p 99.9 1E-26 3.5E-31 252.6 13.6 219 15-273 68-303 (309)
3 2p0a_A Synapsin-3, synapsin II 99.9 1E-26 3.5E-31 255.9 13.6 222 15-276 85-323 (344)
4 1pk8_A RAT synapsin I; ATP bin 99.9 5.8E-26 2E-30 255.2 13.3 220 15-274 180-416 (422)
5 2q7d_A Inositol-tetrakisphosph 99.9 7.9E-22 2.7E-26 216.6 18.2 228 13-272 61-334 (346)
6 1uc8_A LYSX, lysine biosynthes 99.8 1.7E-19 5.8E-24 185.3 15.9 206 12-248 45-253 (280)
7 1z2n_X Inositol 1,3,4-trisphos 99.8 6.1E-18 2.1E-22 179.4 18.8 208 15-258 55-308 (324)
8 3ln6_A Glutathione biosynthesi 99.7 9.4E-19 3.2E-23 209.3 8.1 183 42-251 471-724 (750)
9 3ln7_A Glutathione biosynthesi 99.7 1.2E-18 4.2E-23 208.4 7.5 179 46-251 480-730 (757)
10 1gsa_A Glutathione synthetase; 99.7 2.3E-17 7.9E-22 171.9 8.7 196 12-247 76-284 (316)
11 3r5x_A D-alanine--D-alanine li 99.6 3.3E-16 1.1E-20 164.9 10.6 224 14-269 54-299 (307)
12 1iow_A DD-ligase, DDLB, D-ALA\ 99.6 2.7E-15 9.4E-20 156.6 13.1 207 15-248 54-274 (306)
13 4eg0_A D-alanine--D-alanine li 99.5 5.3E-14 1.8E-18 150.1 13.8 207 15-249 65-284 (317)
14 2fb9_A D-alanine:D-alanine lig 99.5 2.1E-13 7.1E-18 146.6 14.9 198 15-248 76-289 (322)
15 1e4e_A Vancomycin/teicoplanin 99.5 7.7E-13 2.6E-17 142.8 17.0 200 15-247 90-308 (343)
16 2pvp_A D-alanine-D-alanine lig 99.5 3.9E-13 1.3E-17 148.1 14.8 223 15-271 107-346 (367)
17 1ehi_A LMDDL2, D-alanine:D-lac 99.5 4.6E-13 1.6E-17 147.3 15.2 207 14-247 92-319 (377)
18 3df7_A Putative ATP-grAsp supe 99.4 2.6E-13 8.9E-18 145.6 11.7 171 14-247 68-247 (305)
19 3se7_A VANA; alpha-beta struct 99.4 1.8E-12 6E-17 140.5 16.9 199 16-248 91-309 (346)
20 2i87_A D-alanine-D-alanine lig 99.4 9.4E-13 3.2E-17 143.4 14.5 209 14-248 86-310 (364)
21 2z04_A Phosphoribosylaminoimid 99.3 1.3E-11 4.6E-16 133.4 17.1 192 15-248 57-254 (365)
22 3ax6_A Phosphoribosylaminoimid 99.3 6.2E-12 2.1E-16 136.9 14.6 187 16-248 63-261 (380)
23 3aw8_A PURK, phosphoribosylami 99.3 2.2E-12 7.5E-17 139.9 10.3 194 15-247 59-261 (369)
24 2dwc_A PH0318, 433AA long hypo 99.3 4.2E-12 1.4E-16 140.7 11.6 193 15-247 82-294 (433)
25 1kjq_A GART 2, phosphoribosylg 99.3 2.5E-12 8.7E-17 139.7 9.4 196 15-247 74-281 (391)
26 3tqt_A D-alanine--D-alanine li 99.3 1.9E-11 6.7E-16 135.1 15.9 228 15-270 98-353 (372)
27 2pn1_A Carbamoylphosphate synt 99.3 7.8E-12 2.7E-16 132.7 11.6 191 15-247 72-270 (331)
28 2ip4_A PURD, phosphoribosylami 99.3 3.2E-12 1.1E-16 141.0 8.7 200 15-247 61-280 (417)
29 3i12_A D-alanine-D-alanine lig 99.3 4.1E-11 1.4E-15 131.2 16.7 227 15-271 98-353 (364)
30 3q2o_A Phosphoribosylaminoimid 99.3 4E-11 1.4E-15 131.6 16.2 191 16-248 76-278 (389)
31 4dim_A Phosphoribosylglycinami 99.3 7.4E-12 2.5E-16 136.8 9.5 197 15-248 71-279 (403)
32 4fu0_A D-alanine--D-alanine li 99.3 1.2E-11 4E-16 135.1 10.5 190 31-248 114-316 (357)
33 3e5n_A D-alanine-D-alanine lig 99.2 5.1E-11 1.8E-15 132.1 15.3 228 15-272 117-373 (386)
34 3k3p_A D-alanine--D-alanine li 99.2 1.3E-11 4.4E-16 137.2 10.4 228 15-271 119-374 (383)
35 3lwb_A D-alanine--D-alanine li 99.2 4.5E-11 1.5E-15 132.0 14.3 205 15-248 109-334 (373)
36 1vkz_A Phosphoribosylamine--gl 99.2 9.3E-12 3.2E-16 137.9 8.3 203 15-247 70-288 (412)
37 2yrx_A Phosphoribosylglycinami 99.2 8E-12 2.7E-16 139.8 5.9 206 15-247 83-307 (451)
38 2yw2_A Phosphoribosylamine--gl 99.2 1.3E-11 4.4E-16 136.3 7.0 206 16-248 63-287 (424)
39 2xcl_A Phosphoribosylamine--gl 99.2 6.1E-12 2.1E-16 138.8 3.8 205 16-247 63-286 (422)
40 3k5i_A Phosphoribosyl-aminoimi 99.2 2.3E-10 8E-15 127.0 15.5 196 16-248 87-291 (403)
41 4e4t_A Phosphoribosylaminoimid 99.2 3.2E-10 1.1E-14 126.9 16.4 189 15-248 96-303 (419)
42 3orq_A N5-carboxyaminoimidazol 99.1 4E-10 1.4E-14 123.9 16.2 187 16-249 74-275 (377)
43 2qk4_A Trifunctional purine bi 99.1 2E-11 6.9E-16 136.4 4.9 205 16-247 89-313 (452)
44 4ffl_A PYLC; amino acid, biosy 99.1 2.7E-10 9.3E-15 123.3 13.3 176 15-247 63-242 (363)
45 3vot_A L-amino acid ligase, BL 99.1 1.1E-09 3.7E-14 121.2 17.8 204 16-247 76-289 (425)
46 3lp8_A Phosphoribosylamine-gly 99.1 4E-10 1.4E-14 126.9 13.6 205 16-247 84-307 (442)
47 2w70_A Biotin carboxylase; lig 99.1 8.8E-11 3E-15 130.8 7.9 197 15-248 74-292 (449)
48 3eth_A Phosphoribosylaminoimid 99.1 1.3E-09 4.3E-14 120.3 16.2 187 15-248 42-242 (355)
49 3mjf_A Phosphoribosylamine--gl 99.1 4.4E-10 1.5E-14 126.0 12.0 206 16-248 68-293 (431)
50 2r85_A PURP protein PF1517; AT 99.1 1.7E-10 5.7E-15 122.0 7.8 175 33-247 78-286 (334)
51 1ulz_A Pyruvate carboxylase N- 99.1 2E-10 6.8E-15 128.0 8.4 196 15-248 73-291 (451)
52 3ouz_A Biotin carboxylase; str 99.0 2.9E-10 9.8E-15 126.9 9.4 196 15-248 78-296 (446)
53 2vpq_A Acetyl-COA carboxylase; 99.0 2.9E-10 9.9E-15 126.7 8.1 196 15-248 73-292 (451)
54 2dzd_A Pyruvate carboxylase; b 99.0 2.3E-10 7.8E-15 128.1 6.5 197 15-248 79-296 (461)
55 3vmm_A Alanine-anticapsin liga 98.9 4.2E-09 1.4E-13 120.0 12.0 195 15-247 102-329 (474)
56 3n6r_A Propionyl-COA carboxyla 98.9 4.5E-09 1.6E-13 124.9 12.4 196 16-248 75-292 (681)
57 1a9x_A Carbamoyl phosphate syn 98.9 4.3E-09 1.5E-13 130.6 10.4 196 15-247 82-302 (1073)
58 1w96_A ACC, acetyl-coenzyme A 98.8 1.7E-09 5.9E-14 124.9 6.3 206 16-247 131-370 (554)
59 1a9x_A Carbamoyl phosphate syn 98.8 1.5E-08 5.1E-13 125.8 12.6 198 16-247 635-844 (1073)
60 3jrx_A Acetyl-COA carboxylase 98.8 5.9E-09 2E-13 122.2 8.3 209 15-248 139-380 (587)
61 3u9t_A MCC alpha, methylcroton 98.8 3.6E-09 1.2E-13 125.7 6.3 200 15-249 100-319 (675)
62 3glk_A Acetyl-COA carboxylase 98.8 4.8E-09 1.6E-13 121.7 7.1 208 16-248 124-364 (540)
63 2qf7_A Pyruvate carboxylase pr 98.8 2.1E-08 7.3E-13 125.5 13.2 195 16-248 94-312 (1165)
64 3va7_A KLLA0E08119P; carboxyla 98.7 3E-08 1E-12 124.7 12.4 199 16-247 104-320 (1236)
65 3hbl_A Pyruvate carboxylase; T 98.7 5.2E-08 1.8E-12 121.9 13.7 195 15-248 77-294 (1150)
66 2pbz_A Hypothetical protein; N 98.4 9.4E-07 3.2E-11 96.7 12.6 166 39-247 82-267 (320)
67 1nd6_A Prostatic acid phosphat 98.2 6.2E-05 2.1E-09 81.1 20.4 83 818-949 250-332 (354)
68 3it3_A Acid phosphatase; HAP, 98.1 4.5E-05 1.5E-09 83.5 15.8 50 454-506 49-101 (342)
69 2r7k_A 5-formaminoimidazole-4- 97.8 5.6E-05 1.9E-09 83.9 10.4 178 38-247 107-313 (361)
70 2cqy_A Propionyl-COA carboxyla 97.4 5E-07 1.7E-11 80.9 -11.0 96 51-176 4-108 (108)
71 1dkq_A Phytase; histidine acid 97.1 0.00053 1.8E-08 76.6 7.1 50 451-504 51-107 (410)
72 1wr2_A Hypothetical protein PH 97.0 2.3E-05 7.9E-10 81.0 -4.9 102 52-178 18-130 (238)
73 3ntl_A Acid glucose-1-phosphat 96.9 0.0045 1.5E-07 69.6 12.5 49 454-506 56-109 (398)
74 2io8_A Bifunctional glutathion 93.6 0.12 4.1E-06 61.4 8.3 115 34-188 477-601 (619)
75 2nu8_B SCS-beta, succinyl-COA 90.2 0.37 1.3E-05 54.1 6.7 45 56-113 5-50 (388)
76 2fp4_B Succinyl-COA ligase [GD 90.2 0.061 2.1E-06 60.5 0.4 42 57-111 6-48 (395)
77 2gfi_A Phytase; hydrolase; HET 89.9 0.26 8.8E-06 55.9 5.2 56 454-517 138-195 (458)
78 3it3_A Acid phosphatase; HAP, 89.6 0.15 5E-06 55.8 2.8 122 668-900 181-306 (342)
79 1qwo_A Phytase; alpha barrel, 87.8 0.25 8.6E-06 55.4 3.2 54 454-516 113-175 (442)
80 1qfx_A Protein (PH 2.5 acid ph 87.3 0.27 9.2E-06 55.9 3.1 47 451-505 122-172 (460)
81 2wnh_A 3-phytase; histidine ac 86.4 0.28 9.5E-06 54.9 2.5 49 454-506 65-117 (418)
82 3k4q_A 3-phytase A; PHYA, 3-ph 86.4 0.58 2E-05 53.2 5.1 43 454-505 114-158 (444)
83 1nd6_A Prostatic acid phosphat 86.1 0.33 1.1E-05 52.1 2.8 47 454-506 47-96 (354)
84 3ufx_B Succinyl-COA synthetase 83.6 0.83 2.8E-05 51.4 4.7 44 57-113 6-49 (397)
85 3ntl_A Acid glucose-1-phosphat 82.0 0.63 2.2E-05 52.4 2.9 58 817-896 279-337 (398)
86 3tig_A TTL protein; ATP-grAsp, 80.5 0.38 1.3E-05 54.2 0.4 140 13-176 37-210 (380)
87 2wnh_A 3-phytase; histidine ac 80.1 0.94 3.2E-05 50.6 3.5 104 817-950 282-393 (418)
88 3n6x_A Putative glutathionylsp 75.4 1.3 4.3E-05 51.3 2.8 51 153-203 399-466 (474)
89 2gfi_A Phytase; hydrolase; HET 61.7 3.4 0.00012 46.8 2.5 94 817-949 324-423 (458)
90 2vob_A Trypanothione synthetas 60.8 9 0.00031 46.0 5.9 66 105-187 544-615 (652)
91 1qwo_A Phytase; alpha barrel, 60.6 3.7 0.00013 46.0 2.5 20 311-330 45-64 (442)
92 1qfx_A Protein (PH 2.5 acid ph 56.3 4.7 0.00016 45.7 2.5 99 818-949 311-415 (460)
93 1ujc_A Phosphohistidine phosph 45.8 11 0.00037 36.3 2.8 21 481-501 47-67 (161)
94 2rfl_A Putative phosphohistidi 44.7 12 0.0004 36.5 2.9 21 481-501 57-77 (173)
95 1dkq_A Phytase; histidine acid 43.7 51 0.0018 36.6 8.2 59 817-897 295-353 (410)
96 3mxo_A Serine/threonine-protei 39.0 14 0.00048 36.6 2.5 21 481-501 57-77 (202)
97 1qhf_A Protein (phosphoglycera 36.4 18 0.00062 36.7 2.9 21 481-501 51-71 (240)
98 3kkk_A Phosphoglycerate mutase 36.3 18 0.00063 37.0 2.9 21 481-501 62-82 (258)
99 3hjg_A Putative alpha-ribazole 36.1 18 0.00061 36.4 2.7 21 481-501 51-71 (213)
100 3eoz_A Putative phosphoglycera 36.0 16 0.00056 36.7 2.5 21 481-501 71-91 (214)
101 1fzt_A Phosphoglycerate mutase 35.9 18 0.00061 36.1 2.7 21 481-501 58-78 (211)
102 3gp3_A 2,3-bisphosphoglycerate 35.8 19 0.00064 36.9 2.9 21 481-501 60-80 (257)
103 3e9c_A ZGC:56074; histidine ph 32.9 21 0.00071 37.1 2.7 21 481-501 53-73 (265)
104 3c7t_A Ecdysteroid-phosphate p 32.4 23 0.00078 36.5 2.9 21 481-501 84-104 (263)
105 1e58_A Phosphoglycerate mutase 32.0 24 0.00081 36.0 2.9 21 481-501 53-73 (249)
106 3mbk_A Ubiquitin-associated an 32.0 23 0.0008 36.4 2.9 21 481-501 82-102 (264)
107 3r7a_A Phosphoglycerate mutase 32.0 23 0.0008 35.7 2.9 21 481-501 62-82 (237)
108 1h2e_A Phosphatase, YHFR; hydr 31.8 21 0.00072 35.5 2.5 21 481-501 50-70 (207)
109 2qni_A AGR_C_517P, uncharacter 31.5 19 0.00065 36.7 2.1 21 481-501 67-87 (219)
110 3d4i_A STS-2 protein; PGM, 2H- 31.2 25 0.00084 36.4 2.9 21 481-501 91-111 (273)
111 1yfk_A Phosphoglycerate mutase 31.2 24 0.00083 36.5 2.9 21 481-501 54-74 (262)
112 3d8h_A Glycolytic phosphoglyce 30.4 26 0.00088 36.5 2.9 21 481-501 71-91 (267)
113 4eo9_A 2,3-bisphosphoglycerate 29.4 27 0.00093 36.2 2.9 21 481-501 78-98 (268)
114 2hhj_A Bisphosphoglycerate mut 29.4 28 0.00094 36.2 2.9 21 481-501 54-74 (267)
115 4emb_A 2,3-bisphosphoglycerate 28.7 28 0.00097 36.1 2.9 21 481-501 78-98 (274)
116 3f2i_A ALR0221 protein; alpha- 27.8 30 0.001 34.1 2.8 20 481-500 49-68 (172)
117 3dcy_A Regulator protein; OMIM 25.4 31 0.0011 35.9 2.5 21 481-501 58-78 (275)
118 1rii_A 2,3-bisphosphoglycerate 22.7 42 0.0015 35.1 2.9 21 481-501 55-75 (265)
119 3f3k_A Uncharacterized protein 22.5 33 0.0011 35.4 2.0 21 481-501 61-81 (265)
No 1
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=100.00 E-value=1.2e-102 Score=841.36 Aligned_cols=278 Identities=59% Similarity=1.066 Sum_probs=267.0
Q ss_pred eccCCCCCCcCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccc
Q 001944 7 INLGTRWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELD 86 (993)
Q Consensus 7 ~~~Ve~WP~cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~ 86 (993)
-|||||||+|||||||||+||||+|||+|+++|+||+|||+.+|.++|||+++|++|+++|||||+|+++++++......
T Consensus 49 ~~~ve~wp~~d~lisf~s~gfpl~kai~y~~lr~p~~INd~~~q~~~~DK~~~~~iL~~~gIPtP~t~~~~rd~~~~~~~ 128 (330)
T 3t7a_A 49 NEPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNPFVINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNPKEC 128 (330)
T ss_dssp HSCGGGSCCCSEEEECCCTTCCHHHHHHHHHHHCCEESBCSTHHHHHTBHHHHHHHHHHTTCCCCCEEEECCBTTBGGGS
T ss_pred cCCcccCCcCCEEEEeccCCCcHHHHHHHHHHhCCceeCCHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCcccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999986444456
Q ss_pred ccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCC
Q 001944 87 YFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG 166 (993)
Q Consensus 87 ~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~ 166 (993)
.++|.+|+|+++|++|+||||+||++|||||||||||+++||||+|||||+||+||+|+|++ .+|++++|||||||+++
T Consensus 129 ~~~e~~d~i~~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~-~vr~~~~~i~QEFI~~~ 207 (330)
T 3t7a_A 129 NLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPES-NVRKTGSYIYEEFMPTD 207 (330)
T ss_dssp SEEECSSEEEETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCC-SCCSSSCEEEEECCCCS
T ss_pred ceeccchhhhhccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChhh-hhccCCcEEEEeccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999987 67999999999999999
Q ss_pred CceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeCCCcEEEecc
Q 001944 167 GTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVN 246 (993)
Q Consensus 167 G~DIKVytVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~g~syV~DVN 246 (993)
|+||||||||+++||||+|+||++||+||||+||||+|++|+||+||++||+|||+||||+||||||||++++|||||||
T Consensus 208 G~DIRv~vVG~~vv~Am~R~sp~~~G~~r~N~~gG~~~~~v~Lt~eek~iA~kaa~a~G~~v~GVDlLrs~~~~~V~EVN 287 (330)
T 3t7a_A 208 GTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVN 287 (330)
T ss_dssp SEEEEEEEESTTCEEEEEEECTTSSCBCCBCTTSCBCCEECCCCHHHHHHHHHHHHHTTBSEEEEEEEEETTEEEEEEEE
T ss_pred CceEEEEEECCEEEEEEEEeCCCCCCcEEEcCCCCceeeeecCCHHHHHHHHHHHHHhCCceEEEEEEEECCccEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCC
Q 001944 247 GWSFVKNSYKYYDDAACVLRKMFLEAKAPHLSSAIPPILPWKVNE 291 (993)
Q Consensus 247 GwSFVK~n~kYYddcA~iL~~~~l~~~~~~~~~~~p~~~p~~~~~ 291 (993)
||||||+|.+|||+||+|||.+||++++|++ ++||+.+.
T Consensus 288 g~~fvk~~~~yyd~~a~il~~~~~~~~~~~~------~~~~~~~~ 326 (330)
T 3t7a_A 288 GFSFVKNSMKYYDDCAKILGNIVMRELAPQF------HIPWSIPL 326 (330)
T ss_dssp ESCCCSSCHHHHHHHHHHHHHHHHHHHHHHH------TCCCCC--
T ss_pred CCccccCchhHHHHHHHHHHHHHHHHhCccc------CCcccCCC
Confidence 9999999999999999999999999999997 57776543
No 2
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.94 E-value=1e-26 Score=252.57 Aligned_cols=219 Identities=15% Similarity=0.134 Sum_probs=163.1
Q ss_pred CcCEEeecccCCC-----ChHHHHHHHhhcCCcccCCcchhhhhhhH----HHHHHHHHhCCC---CCCCEEEEeccCCC
Q 001944 15 ICDCLIAFYSSGY-----PLEKAESYATLRKPFLVNELEPQHLLHDR----RKVYEQLEKYGI---PVPRYALVNREVPY 82 (993)
Q Consensus 15 ~cD~LIsF~S~GF-----PL~KAi~y~~lr~p~~iNdl~~q~ll~DR----~~v~qiL~~~gI---P~P~t~~~~r~~p~ 82 (993)
.-|++|-.--+.. -.--++++++..+.++||++.+...++|| ..++++|.+.|+ |+|.+.+...
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~vl~~le~~GvpviN~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~~~~---- 143 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPN---- 143 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESS----
T ss_pred cCCEEEEecccccccccchHHHHHHHHHHCCccccCCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEeeCC----
Confidence 3587765443221 11356778999999999999999999999 778999999999 9555544422
Q ss_pred ccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-cCcceEEee
Q 001944 83 QELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEE 161 (993)
Q Consensus 83 ~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyEE 161 (993)
..+.++ .++.|+|+||+.|+ +|-|+. | +.++.+.-+ -+...+ .+..++.||
T Consensus 144 --------~~~~~~----~~g~PvVvK~~~Gs-----------~G~GV~-l---v~~~~~~~~-~~~~~~~~~~~~~vQe 195 (309)
T 1i7n_A 144 --------HREMLT----LPTFPVVVKIGHAH-----------SGMGKV-K---VENHYDFQD-IASVVALTQTYATAEP 195 (309)
T ss_dssp --------GGGGSS----CCCSSEEEEESSCS-----------TTTTEE-E---ECSHHHHHH-HHHHHHHHTCCEEEEE
T ss_pred --------hhhhhh----ccCCCEEEEeCCCC-----------ceeCeE-E---ECCHHHHHH-HHHHHhccCCeEEEEe
Confidence 112332 24589999999999 887874 3 333332211 011222 345567899
Q ss_pred ccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHh-CCceeEEEEEeeCCC-
Q 001944 162 FMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCEGR- 239 (993)
Q Consensus 162 Fi~t~G~DIKVytVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~af-gq~VcGfDLLRs~g~- 239 (993)
||+ .|.||||++||++++ |+.|+|+ .|.|++|.+ ++...++.||++++++|.+|+++| |++|||||||++.+|
T Consensus 196 fI~-~g~DiRv~VvGg~v~-a~~Rr~~--~g~wrtN~~-~~~~e~~~l~~e~~~la~~A~~a~gGldi~GVDll~~~~g~ 270 (309)
T 1i7n_A 196 FID-AKYDIRVQKIGNNYK-AYMRTSI--SGNWKTNTG-SAMLEQIAMSDRYKLWVDACSEMFGGLDICAVKAVHGKDGK 270 (309)
T ss_dssp CCC-EEEEEEEEEETTEEE-EEEEESS--CTTTSCSCC-CSSEEEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETTSC
T ss_pred ecC-CCceEEEEEECCEEE-EEEEEcC--CCCCeecCC-cceeeecCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC
Confidence 999 699999999999997 7777786 899999996 577789999999999999999999 799999999999776
Q ss_pred cEEEeccC--ccccccccccHHHHHHHHHHHHHHhh
Q 001944 240 SYVCDVNG--WSFVKNSYKYYDDAACVLRKMFLEAK 273 (993)
Q Consensus 240 syV~DVNG--wSFVK~n~kYYddcA~iL~~~~l~~~ 273 (993)
+||||||+ .++.++... +.+.-+.++++..+
T Consensus 271 ~~V~EVN~~~~P~~~~~~~---~~~~~ia~~ii~~~ 303 (309)
T 1i7n_A 271 DYIFEVMDCSMPLIGEHQV---EDRQLITDLVISKM 303 (309)
T ss_dssp EEEEEEECTTCCCCSSCHH---HHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCccchhh---hhHHHHHHHHHHHH
Confidence 58999999 999886654 44444444444443
No 3
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=255.91 Aligned_cols=222 Identities=14% Similarity=0.147 Sum_probs=163.6
Q ss_pred CcCEEeecccCCC-----ChHHHHHHHhhcCCcccCCcchhhhhhhH----HHHHHHHHhCCC---CCCCEEEEeccCCC
Q 001944 15 ICDCLIAFYSSGY-----PLEKAESYATLRKPFLVNELEPQHLLHDR----RKVYEQLEKYGI---PVPRYALVNREVPY 82 (993)
Q Consensus 15 ~cD~LIsF~S~GF-----PL~KAi~y~~lr~p~~iNdl~~q~ll~DR----~~v~qiL~~~gI---P~P~t~~~~r~~p~ 82 (993)
.-|++|-.--... -.--++++++..+.++||++.+...++|| ..++++|.+.|+ |+|.+.+...
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~vl~~le~~GvpviN~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~~~~---- 160 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPN---- 160 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEESCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEEESS----
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCceecCCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEecCc----
Confidence 3477765443311 01356778999999999999999999999 788999999999 9555544422
Q ss_pred ccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-cCcceEEee
Q 001944 83 QELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEE 161 (993)
Q Consensus 83 ~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyEE 161 (993)
..+.+. .+++|+|+||+.|+ +|-|+. |.+ ++.+.-+ -+..+. .+..++.||
T Consensus 161 --------~~~~~~----~~g~PvVvK~~~Gs-----------~G~GV~-lve---~~~~~~~-~~~~~~~~~~~~~vQe 212 (344)
T 2p0a_A 161 --------HKPMVT----APHFPVVVKLGHAH-----------AGMGKI-KVE---NQLDFQD-ITSVVAMAKTYATTEA 212 (344)
T ss_dssp --------STTCCC----CSSSSEEEEESSCC-----------TTTTEE-EEC---SHHHHHH-HHHHHHHHTCCEEEEE
T ss_pred --------hhhhhh----ccCCCEEEEeCCCC-----------ceeCeE-EEC---CHHHHHH-HHHHHhccCCeEEEEe
Confidence 112333 24589999999999 887874 433 3332211 000222 244566899
Q ss_pred ccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHh-CCceeEEEEEeeCCC-
Q 001944 162 FMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCEGR- 239 (993)
Q Consensus 162 Fi~t~G~DIKVytVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~af-gq~VcGfDLLRs~g~- 239 (993)
||+ .|.||||++||++++ |+.|+++ .|.|++|++ ++...++.||++++++|.+|+++| |++|||||||++.++
T Consensus 213 fI~-~g~DiRv~VVGg~vv-a~~R~~~--~g~wrtN~~-~~~~e~~~l~~e~~~la~~Aa~a~gGldi~GVDll~~~~G~ 287 (344)
T 2p0a_A 213 FID-SKYDIRIQKIGSNYK-AYMRTSI--SGNWKANTG-SAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGR 287 (344)
T ss_dssp CCC-EEEEEEEEEETTEEE-EEEEEES--SSCSSTTSS-SEEEEEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETTSC
T ss_pred ccC-CCccEEEEEECCEEE-EEEEecC--CCCCeecCC-ceEEEeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC
Confidence 999 699999999999998 5666675 799999996 577789999999999999999999 799999999999777
Q ss_pred cEEEeccC--ccccccccccHHHHHHHHHHHHHHhhCCC
Q 001944 240 SYVCDVNG--WSFVKNSYKYYDDAACVLRKMFLEAKAPH 276 (993)
Q Consensus 240 syV~DVNG--wSFVK~n~kYYddcA~iL~~~~l~~~~~~ 276 (993)
.||||||+ -++.++.. .+++.-+...|++.+..+
T Consensus 288 ~~VlEVN~~~~P~~~~~~---~~~~~~Ia~~ii~~i~~~ 323 (344)
T 2p0a_A 288 DYIIEVMDSSMPLIGEHV---EEDRQLMADLVVSKMSQL 323 (344)
T ss_dssp EEEEEEECTTCCCCGGGH---HHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEcCCCCCcccchh---hhHHHHHHHHHHHHHHHh
Confidence 58999999 56665433 466666666666665433
No 4
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.93 E-value=5.8e-26 Score=255.20 Aligned_cols=220 Identities=16% Similarity=0.164 Sum_probs=162.6
Q ss_pred CcCEEeecccCCC-----ChHHHHHHHhhcCCcccCCcchhhhhhhH----HHHHHHHHhCCC---CCCCEEEEeccCCC
Q 001944 15 ICDCLIAFYSSGY-----PLEKAESYATLRKPFLVNELEPQHLLHDR----RKVYEQLEKYGI---PVPRYALVNREVPY 82 (993)
Q Consensus 15 ~cD~LIsF~S~GF-----PL~KAi~y~~lr~p~~iNdl~~q~ll~DR----~~v~qiL~~~gI---P~P~t~~~~r~~p~ 82 (993)
..|++|-.--... -..-++++++..+.++||++.+...++|| ..++++|.+.|+ |+|.+.+...
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr~lE~~GvpviNs~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t~~~~---- 255 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPN---- 255 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESS----
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCccccCCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceEecCc----
Confidence 3577765432221 11356788999999999999999999999 678999999999 8444444422
Q ss_pred ccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-cCcceEEee
Q 001944 83 QELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEE 161 (993)
Q Consensus 83 ~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-~~gsyIyEE 161 (993)
..+.+. .+++|+|+||+.|+ +|-|+. | +.++...-+ -+..++ .+..|+.||
T Consensus 256 --------~~~~i~----~~g~PvVvKp~~GS-----------~G~GV~-l---ve~~~~l~~-ii~~~~~~~~~~~vQE 307 (422)
T 1pk8_A 256 --------HKEMLS----STTYPVVVKMGHAH-----------SGMGKV-K---VDNQHDFQD-IASVVALTKTYATAEP 307 (422)
T ss_dssp --------GGGCCC----CSSSSEEEEESSCC-----------TTTTEE-E---ECSHHHHHH-HHHHHHHHTSCEEEEE
T ss_pred --------hhhhhh----ccCCCEEEEeCCCC-----------ceeCeE-E---eCCHHHHHH-HHHHHhccCceEEEEe
Confidence 122333 24689999999999 888874 3 333332211 011222 245566899
Q ss_pred ccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHh-CCceeEEEEEeeCCC-
Q 001944 162 FMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCEGR- 239 (993)
Q Consensus 162 Fi~t~G~DIKVytVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~af-gq~VcGfDLLRs~g~- 239 (993)
||+ .|+||||+|||++++ |+.|+++ .|.||+|++ ++...++.||++++++|.+|+++| |++|||||||++.++
T Consensus 308 fI~-~g~DIRv~VVGg~vv-a~~Rr~~--~g~WrtNvg-~g~~e~i~lt~e~~elA~kAaka~gGldiaGVDlL~s~dG~ 382 (422)
T 1pk8_A 308 FID-AKYDVRVQKIGQNYK-AYMRTSV--SGNWKTNTG-SAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGR 382 (422)
T ss_dssp CCC-EEEEEEEEEETTEEE-EEEEEES--SSCSSTTSS-CEEEEEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETTSC
T ss_pred ecC-CCceEEEEEECCEEE-EEEEEcC--CCCceeccC-ceeeeeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC
Confidence 999 699999999999998 6667665 799999995 677789999999999999999999 899999999999766
Q ss_pred cEEEeccC--ccccccccccHHHHHHHHHHHHHHhhC
Q 001944 240 SYVCDVNG--WSFVKNSYKYYDDAACVLRKMFLEAKA 274 (993)
Q Consensus 240 syV~DVNG--wSFVK~n~kYYddcA~iL~~~~l~~~~ 274 (993)
.||||||+ -.+.++.. .+.+.-+.+++++.+.
T Consensus 383 ~~VlEVN~s~~P~~~g~~---~~~~~~IA~~ii~~i~ 416 (422)
T 1pk8_A 383 DHIIEVVGSSMPLIGDHQ---DEDKQLIVELVVNKMT 416 (422)
T ss_dssp EEEEEEECTTCCCCTTCH---HHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCccchh---hhHHHHHHHHHHHHHH
Confidence 58999999 56665544 3555555666666553
No 5
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.87 E-value=7.9e-22 Score=216.58 Aligned_cols=228 Identities=17% Similarity=0.246 Sum_probs=157.3
Q ss_pred CCCcCEEeecccCCCC------------hHHHHHHHh-hcCCcccCCcchhhhhhhHHHHHHHHHhC-------CCCCCC
Q 001944 13 WPICDCLIAFYSSGYP------------LEKAESYAT-LRKPFLVNELEPQHLLHDRRKVYEQLEKY-------GIPVPR 72 (993)
Q Consensus 13 WP~cD~LIsF~S~GFP------------L~KAi~y~~-lr~p~~iNdl~~q~ll~DR~~v~qiL~~~-------gIP~P~ 72 (993)
...+|+.|.-....++ +....+|.. ..+.++||+......+.||..++++|++. |||+|+
T Consensus 61 ~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~ 140 (346)
T 2q7d_A 61 QGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPP 140 (346)
T ss_dssp GCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCC
T ss_pred cCCCCEEEeCCcccccccccCchhHHHHHHHHHHHHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCC
Confidence 4567888776544222 222334433 24688999999999999999999999997 999999
Q ss_pred EEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc---CcceeEEeccCCCChHHHHHhhcCCCccccccccc
Q 001944 73 YALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD---DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR 149 (993)
Q Consensus 73 t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge---dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~ 149 (993)
|+++.+..+. +..+.+...+ ++.|+|+||+.|+ -|++.+ +.+.+. +.
T Consensus 141 t~~~~~~~~~-------~~~~~~~~~~--lg~P~VvKP~~g~Gs~s~~v~~----------------v~~~~~-l~---- 190 (346)
T 2q7d_A 141 FMELTSLCGD-------DTMRLLEKNG--LTFPFICKTRVAHGTNSHEMAI----------------VFNQEG-LN---- 190 (346)
T ss_dssp EEEECSCCCT-------THHHHHHHTT--CCSSEEEECSBCSSTTCCEEEE----------------ECSGGG-TT----
T ss_pred EEEEeCCCHH-------HHHHHHHhcC--CCCCEEEEecCCCcceeeeeEE----------------ecCHHH-HH----
Confidence 9999763111 0112222122 4689999999763 223222 222111 11
Q ss_pred ccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCC-CC-------eeee-cCC-CCceee---------eeeC-
Q 001944 150 RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV-DG-------VVMR-NPD-GKEVRY---------PVLL- 209 (993)
Q Consensus 150 ~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~v-DG-------~vrr-N~~-gke~r~---------~v~L- 209 (993)
. .+..+++||||+.+|.|+||||||+.+++++.|..|.+ .| .|.+ |.+ +|..++ ...+
T Consensus 191 ~--~~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~sl~~~~~~~~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~~~ 268 (346)
T 2q7d_A 191 A--IQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERP 268 (346)
T ss_dssp C----CCEEEEECCCCTTEEEEEEEETTEEEEEEEECCCCCC----CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCC
T ss_pred h--cCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEecCCCcCcCccccccccccceeeccCCccccccccccccccccCC
Confidence 1 24569999999989999999999999998866655421 01 2332 223 343321 1223
Q ss_pred -CHHHHHHHHHHHHHhCCceeEEEEEeeC--CCcEEEeccCccccccccccHHHHHHHHHHHHHHh
Q 001944 210 -TPNEKQMAREVCIAFRQAVCGFDLLRCE--GRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEA 272 (993)
Q Consensus 210 -t~eEk~iA~ka~~afgq~VcGfDLLRs~--g~syV~DVNGwSFVK~n~kYYddcA~iL~~~~l~~ 272 (993)
+++.+++|.++++++|++++|||++++. |++||+|||.|+=.++-.+|...+.++|....-+.
T Consensus 269 ~~~el~~lA~~a~~alGl~~~gvDii~~~~~g~~~VlEVN~~PG~~g~~~~~~~i~~~l~~~~~~~ 334 (346)
T 2q7d_A 269 SDEVIRELSRALRQALGVSLFGIDIIINNQTGQHAVIDINAFPGYEGVSEFFTDLLNHIATVLQGQ 334 (346)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEEEEECTTTCCEEEEEEEESCCCTTCTTHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCceEeeEEEeecCCCCEEEEEEeCCccccccchHHHHHHHHHHHHhhcc
Confidence 4688999999999999999999999985 67999999999888888889888887777766443
No 6
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.81 E-value=1.7e-19 Score=185.27 Aligned_cols=206 Identities=22% Similarity=0.212 Sum_probs=144.4
Q ss_pred CCCCcC-EEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccc
Q 001944 12 RWPICD-CLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIE 90 (993)
Q Consensus 12 ~WP~cD-~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e 90 (993)
.|+.+| ++|.-+. ++-...+.++++..+..++|+.....+++||..+.++|+++|||+|++..+...
T Consensus 45 ~~~~~d~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~~~~~----------- 112 (280)
T 1uc8_A 45 ELEGVTVALERCVS-QSRGLAAARYLTALGIPVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDR----------- 112 (280)
T ss_dssp GGTTCCEEEECCSS-HHHHHHHHHHHHHTTCCEESCHHHHHHHHBHHHHHHHHHHTTCCCCCEEEESSH-----------
T ss_pred ccCCCCEEEECCcc-chhhHHHHHHHHHCCCceeCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEeeCCH-----------
Confidence 367789 6676554 232335667777777667799999999999999999999999999999988651
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc--cCcceEEeeccCCCCc
Q 001944 91 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR--REGSYIYEEFMPTGGT 168 (993)
Q Consensus 91 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r--~~gsyIyEEFi~t~G~ 168 (993)
++....- ..++.|+|+||..|. .|.|+. +++....-...+.. ..... .+..+|+||||+..|.
T Consensus 113 -~~~~~~~-~~~~~p~vvKp~~g~-----------~~~gv~-~v~~~~el~~~~~~-~~~~~~~~~~~~lvqe~i~~~~~ 177 (280)
T 1uc8_A 113 -EEALRLM-EAFGYPVVLKPVIGS-----------WGRLLA-XXXXXXXXXXXXXX-KEVLGGFQHQLFYIQEYVEKPGR 177 (280)
T ss_dssp -HHHHHHH-HHHCSSEEEECSBCC-----------BCSHHH-HHHHHHC-------------CTTTTCEEEEECCCCSSC
T ss_pred -HHHHHHH-HHhCCCEEEEECCCC-----------Ccccce-ecccccccchhhhh-HhhhcccCCCcEEEEeccCCCCc
Confidence 1111110 124579999999997 566774 45433222222220 00012 2678999999998899
Q ss_pred eeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCceeEEEEEeeCCCcEEEeccCc
Q 001944 169 DVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGW 248 (993)
Q Consensus 169 DIKVytVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~g~syV~DVNGw 248 (993)
+++|+++|++++++..|++ +.|+.|.+.++...|..|+++.+++|.++++++|..++|||++...+++||+|||..
T Consensus 178 e~~v~v~~~~~~~~~~~~~----~~~~~~~~~g~~~~p~~l~~~~~~~~~~~~~~lg~g~~~vD~~~~~~g~~~iEiN~r 253 (280)
T 1uc8_A 178 DIRVFVVGERAIAAIYRRS----AHWITNTARGGQAENCPLTEEVARLSVKAAEAVGGGVVAVDLFESERGLLVNEVNHT 253 (280)
T ss_dssp CEEEEEETTEEEEEEEC------------------CEECCCCHHHHHHHHHHHHHTTCSEEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEEECCEEEEEEEEec----CCccccccCCccccCCCCCHHHHHHHHHHHHHhCCCeEEEEEEEeCCCeEEEEEeCC
Confidence 9999999999999988863 679999887777789999999999999999999999999999999778999999953
No 7
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.77 E-value=6.1e-18 Score=179.38 Aligned_cols=208 Identities=17% Similarity=0.244 Sum_probs=143.6
Q ss_pred CcCEEeecccCCCC-hHHHHHHHhh--cCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 001944 15 ICDCLIAFYSSGYP-LEKAESYATL--RKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 91 (993)
Q Consensus 15 ~cD~LIsF~S~GFP-L~KAi~y~~l--r~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~ 91 (993)
.+|+++.-...-+. +..+++.+.. .+..++|+.....++.||..++++|+++|||+|++.++.+.. +.
T Consensus 55 ~~d~v~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gi~~P~~~~~~~~~---------~~ 125 (324)
T 1z2n_X 55 EPNAIITKRTHPVGKMADEMRKYEKDHPKVLFLESSAIHDMMSSREEINALLIKNNIPIPNSFSVKSKE---------EV 125 (324)
T ss_dssp CCSEEEECCSCSSSHHHHHHHHHHHHCTTSEEETCHHHHHHHTBHHHHHHHHHHTTCCCSCEEEESSHH---------HH
T ss_pred CceEEEEeccchHHHHHHHHHHHHHhCCCCeEeCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEeCCHH---------HH
Confidence 46877654432221 2233333333 455688999999999999999999999999999999986520 01
Q ss_pred cceeeecCeeccCcEEEeeccccC----cceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCC
Q 001944 92 EDFVEVHGNRFWKPFVEKPVHGDD----HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG 167 (993)
Q Consensus 92 ~d~i~v~g~~~~kPfVeKpv~Ged----Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G 167 (993)
.+.+.-.| +++|+|+||..|.. |++++.. +.+ .+. . .+..+|+||||+..|
T Consensus 126 ~~~~~~~~--~~~P~vvKP~~g~g~~~s~gv~~v~----------------~~~-~l~----~--~~~~~lvqe~i~~~g 180 (324)
T 1z2n_X 126 IQLLQSKQ--LILPFIVKPENAQGTFNAHQMKIVL----------------EQE-GID----D--IHFPCLCQHYINHNN 180 (324)
T ss_dssp HHHHHTTC--SCSSEEEEESBCSSSSGGGEEEEEC----------------SGG-GGT----T--CCSSEEEEECCCCTT
T ss_pred HHHHHHcC--CCCCEEEeeCCCCCCccceeeEEEe----------------CHH-HHh----h--cCCCEEEEEccCCCC
Confidence 11121111 35799999999851 2222222 211 111 1 256799999999889
Q ss_pred ceeEEEEECCceeEEEeeeCCC-C-----------------------------------CCeeeecCCCCceeeeeeCC-
Q 001944 168 TDVKVYTVGPEYAHAEARKSPV-V-----------------------------------DGVVMRNPDGKEVRYPVLLT- 210 (993)
Q Consensus 168 ~DIKVytVG~~~vhAe~RKSP~-v-----------------------------------DG~vrrN~~gke~r~~v~Lt- 210 (993)
.|++|+++|+++++++ |+++. + .+.|+.|.+. +...+..++
T Consensus 181 ~~~~v~v~g~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 258 (324)
T 1z2n_X 181 KIVKVFCIGNTLKWQT-RTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILE-DPILLNLTSE 258 (324)
T ss_dssp CEEEEEEETTEEEEEE-ECCCCCCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCS-CTTTTTSCCH
T ss_pred cEEEEEEECCEEEEEE-ecCcccccCCCccceeeccccchhhhccccccccccccccccccchhhcccc-CCccccCCCH
Confidence 9999999999999985 55541 1 1346667664 334577888
Q ss_pred HHHHHHHHHHHHHhCCceeEEEEEee-C-CCcEEEeccCccccccccccH
Q 001944 211 PNEKQMAREVCIAFRQAVCGFDLLRC-E-GRSYVCDVNGWSFVKNSYKYY 258 (993)
Q Consensus 211 ~eEk~iA~ka~~afgq~VcGfDLLRs-~-g~syV~DVNGwSFVK~n~kYY 258 (993)
++.+++|.++++++|..+||||++.. . |.+||+|||..+-...-..|.
T Consensus 259 ~~i~~~a~~~~~~lg~~~~~vD~~~~~~~g~~~vlEvN~~Pg~~~~~~~~ 308 (324)
T 1z2n_X 259 AEMRDLAYKVRCALGVQLCGIDFIKENEQGNPLVVDVNVFPSYGGKVDFD 308 (324)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEECGGGCSSCEEEEEEESCCTTSCBCHH
T ss_pred HHHHHHHHHHHHHhCCcEEeeEEEEEcCCCCEEEEEEcCCCCcCCCCCHH
Confidence 79999999999999999999999987 4 669999999554444444554
No 8
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.74 E-value=9.4e-19 Score=209.29 Aligned_cols=183 Identities=19% Similarity=0.232 Sum_probs=139.8
Q ss_pred cccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEE
Q 001944 42 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 121 (993)
Q Consensus 42 ~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IY 121 (993)
...+...+..+++||..+.++|+++|||+|++.++... ++....-...+++|+|+||..|.
T Consensus 471 tg~~~~~a~~~~~DK~~tk~lL~~~GIPvP~~~~~~~~------------~ea~~~~~~~~g~PvVVKP~~G~------- 531 (750)
T 3ln6_A 471 TSKDNYIVPLAMANKVVTKKILDEKHFPTPFGDEFTDR------------KEALNYFSQIQDKPIVVKPKSTN------- 531 (750)
T ss_dssp CTTSCTHHHHHTTTSHHHHHHHHHTTCCCCCCCCEETT------------TTHHHHHHHSSSSCEEEEETTCC-------
T ss_pred eCCCHHHHHHHHhCHHHHHHHHHHCCcCCCCEEEECCH------------HHHHHHHHHhcCCcEEEEeCCCC-------
Confidence 45666778888899999999999999999999988762 12222111234689999999997
Q ss_pred eccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCC---------
Q 001944 122 YPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVD--------- 191 (993)
Q Consensus 122 yp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~vD--------- 191 (993)
.|.|+. ++..+.+....-.. +. ..+.+..+|+||||+ |+|++|++||+++++|+.|.+|.+.
T Consensus 532 ----~G~GV~-iv~~~~s~eel~~a-~~~~~~~~~~vlVEefI~--G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~e 603 (750)
T 3ln6_A 532 ----FGLGIS-IFKTSANLASYEKA-IDIAFTEDSAILVEEYIE--GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQ 603 (750)
T ss_dssp ----SSSSCE-EESSCCCHHHHHHH-HHHHHHHCSEEEEEECCC--SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHH
T ss_pred ----CCCCEE-EEeCCCCHHHHHHH-HHHHHhhCCcEEEEeccC--CCEEEEEEECCEEEEEEEEecceEecCCccCHHH
Confidence 666764 44433232222110 10 112467899999998 8999999999999999999987531
Q ss_pred ---------------------------------------------Ce-----eeecCCCCceeeee--eCCHHHHHHHHH
Q 001944 192 ---------------------------------------------GV-----VMRNPDGKEVRYPV--LLTPNEKQMARE 219 (993)
Q Consensus 192 ---------------------------------------------G~-----vrrN~~gke~r~~v--~Lt~eEk~iA~k 219 (993)
|. ++.|.+.|+....+ .++++.+++|.+
T Consensus 604 LI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~~V~~~Ge~v~L~~~~Nls~Gg~~~d~td~i~p~~~~~a~~ 683 (750)
T 3ln6_A 604 LVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQGYTVNSIPPEGTKIELRRNSNISTGGDSIDVTNTMDPTYKQLAAE 683 (750)
T ss_dssp HHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHTTCCSSCCCCTTCEEESCSSCCTTTTCEEEECTTTSCHHHHHHHHH
T ss_pred HHHhhccCccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEEeecccccCCCceeeccccCCHHHHHHHHH
Confidence 22 67899999999999 799999999999
Q ss_pred HHHHhCCceeEEEEEeeC---------CCcEEEeccCcccc
Q 001944 220 VCIAFRQAVCGFDLLRCE---------GRSYVCDVNGWSFV 251 (993)
Q Consensus 220 a~~afgq~VcGfDLLRs~---------g~syV~DVNGwSFV 251 (993)
|++++|+.||||||+... ++.+|||||+-+-.
T Consensus 684 aa~~igl~~~GvDli~~di~~~~~~~~~~~~iiEvN~~pg~ 724 (750)
T 3ln6_A 684 MAEAMGAWVCGVDLIIPNATQAYSKDKKNATCIELNFNPLM 724 (750)
T ss_dssp HHHHHTCSSCEEEEEESCSSSCCCTTTTCCEEEEEESSCCC
T ss_pred HHHHhCCCeEEEEEEecCccccccccCCCeEEEEEcCCcch
Confidence 999999999999999874 35589999976544
No 9
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.74 E-value=1.2e-18 Score=208.41 Aligned_cols=179 Identities=21% Similarity=0.234 Sum_probs=134.6
Q ss_pred CcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccC
Q 001944 46 ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSS 125 (993)
Q Consensus 46 dl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~ 125 (993)
+..+..+++||..+.++|+++|||+|++.++... ++.+..-...+++|+|+||..|.
T Consensus 480 s~~aa~~~~DK~~tk~lL~~~GIPvP~~~~~~~~------------~ea~~~~~~~~g~PvVVKP~~g~----------- 536 (757)
T 3ln7_A 480 SYISPLIMENKVVTKKVLQKAGFNVPQSVEFTSL------------EKAVASYALFENRAVVIKPKSTN----------- 536 (757)
T ss_dssp BSHHHHHHHHSHHHHHHHHHHTCCCCCEEEESCH------------HHHHHGGGGSSSSCEEEEESSCS-----------
T ss_pred HHHHHHHhcCHHHHHHHHHHCCcCCCCEEEECCH------------HHHHHHHHHhcCCCEEEEeCCCC-----------
Confidence 3456678889999999999999999999988651 12222111235689999999997
Q ss_pred CCChHHHHHh-hcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCC-------------
Q 001944 126 AGGGMKELFR-KVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV------------- 190 (993)
Q Consensus 126 ~GgG~~rLfr-kign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~v------------- 190 (993)
.|-|+. ++. ++.+....-. -+. ..+.+..+|+||||+ |+|++|++||+++++|+.|.+|.|
T Consensus 537 ~G~GV~-iv~~~v~~~eel~~-al~~a~~~~~~vlVEefI~--G~Ei~v~Vlggkvvaai~R~p~~VvGDG~~ti~eLi~ 612 (757)
T 3ln7_A 537 YGLGIT-IFQQGVQNREDFAK-ALEIAFREDKEVMVEDYLV--GTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELVA 612 (757)
T ss_dssp TTTTCE-ECSSCCCCHHHHHH-HHHHHHHHCSSEEEEECCC--SEEEEEEEETTEEEEEEEECCSEEEGGGCCCHHHHHH
T ss_pred CCCCeE-EecCCCCCHHHHHH-HHHHHHhcCCcEEEEEcCC--CcEEEEEEECCEEEEEEEEecccccCCCcccHHHHHH
Confidence 566664 331 1122222111 010 112467899999995 899999999999999999998632
Q ss_pred -----------------------------------------CCe-----eeecCCCCceeeee--eCCHHHHHHHHHHHH
Q 001944 191 -----------------------------------------DGV-----VMRNPDGKEVRYPV--LLTPNEKQMAREVCI 222 (993)
Q Consensus 191 -----------------------------------------DG~-----vrrN~~gke~r~~v--~Lt~eEk~iA~ka~~ 222 (993)
.|. ++.|.+.|+....| .++++.+++|.+|++
T Consensus 613 ~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~dvtd~i~p~~~~~a~~aa~ 692 (757)
T 3ln7_A 613 MKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDMTDEMHESYKQLAVGITK 692 (757)
T ss_dssp HHHTSTTEECSSSSSEECCCCCHHHHHHHHHHTCCSSSCCCSSCEEECCSSCCGGGTCCEEECTTTSCHHHHHHHHHHHH
T ss_pred hhcccccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEeecccccccCccceeccccCCHHHHHHHHHHHH
Confidence 233 58899999999999 999999999999999
Q ss_pred HhCCceeEEEEEeeC---------CCcEEEeccCcccc
Q 001944 223 AFRQAVCGFDLLRCE---------GRSYVCDVNGWSFV 251 (993)
Q Consensus 223 afgq~VcGfDLLRs~---------g~syV~DVNGwSFV 251 (993)
++|+.||||||+... ++..|||||+-+-.
T Consensus 693 ~lGl~~~GvDli~~di~~p~~~~~~~~~iiEvN~~P~~ 730 (757)
T 3ln7_A 693 AMGAAVCGVDLIIPDLKQPATPNLTSWGVIEANFNPMM 730 (757)
T ss_dssp HHTCSEEEEEEEESCSSSCCCSSTTTCEEEEEESSCCH
T ss_pred HhCCCEEEEEEEecCccccccccCCCeEEEEEcCCcch
Confidence 999999999999872 36689999976543
No 10
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.69 E-value=2.3e-17 Score=171.91 Aligned_cols=196 Identities=14% Similarity=0.154 Sum_probs=143.9
Q ss_pred CCCCcCEEeecccCCCC-----hHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccc
Q 001944 12 RWPICDCLIAFYSSGYP-----LEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELD 86 (993)
Q Consensus 12 ~WP~cD~LIsF~S~GFP-----L~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~ 86 (993)
.|..+|+++.....++. ....++.++..+..++|+.....++.||..++++|+ |+|++..++..
T Consensus 76 ~~~~~d~v~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~----~~P~t~~~~~~------- 144 (316)
T 1gsa_A 76 PLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSD----LTPETLVTRNK------- 144 (316)
T ss_dssp EGGGSSEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEESCHHHHHHCCTTGGGGGGTT----TSCCEEEESCH-------
T ss_pred ccccCCEEEEecCCCCchhhHHHHHHHHHHHHcCCeEecCHHHHHhhhhHHHHHhhhh----cCCCeEEeCCH-------
Confidence 46678998875443332 123455666677778899999999999999999887 99999988551
Q ss_pred ccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcC-CCccccccccccc-c-cCcceEEeecc
Q 001944 87 YFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVG-NRSSEFHPDVRRV-R-REGSYIYEEFM 163 (993)
Q Consensus 87 ~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkig-n~sS~~~p~~~~~-r-~~gsyIyEEFi 163 (993)
++....- ..++ |+|+||..|. .|-|+. ++. +. .++..-+... . ....+|+||||
T Consensus 145 -----~~~~~~~-~~~~-p~vvKP~~g~-----------~g~Gv~----~v~~~~-~~l~~~~~~~~~~~~~~~lvqe~i 201 (316)
T 1gsa_A 145 -----AQLKAFW-EKHS-DIILKPLDGM-----------GGASIF----RVKEGD-PNLGVIAETLTEHGTRYCMAQNYL 201 (316)
T ss_dssp -----HHHHHHH-HHHS-SEEEECSSCC-----------TTTTCE----EECTTC-TTHHHHHHHHTTTTTSCEEEEECC
T ss_pred -----HHHHHHH-HHcC-CEEEEECCCC-----------CcccEE----EecCCh-HHHHHHHHHHHhcCCceEEEeccc
Confidence 1111111 1234 9999999986 333432 122 11 1111000011 1 24679999999
Q ss_pred CC-CCceeEEEEECCceeE-EEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHH---hCCceeEEEEEeeCC
Q 001944 164 PT-GGTDVKVYTVGPEYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIA---FRQAVCGFDLLRCEG 238 (993)
Q Consensus 164 ~t-~G~DIKVytVG~~~vh-Ae~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~a---fgq~VcGfDLLRs~g 238 (993)
+. .+.|++|+++|+++++ +..|+++ .|.|+.|.+.|+...|..|+++.+++|.+++++ +|..++|||++
T Consensus 202 ~~~~~~~~~v~~~~g~~~~~~~~r~~~--~~~~~~~~~~gg~~~~~~~~~~~~~~a~~~~~~l~~~g~~~~~vD~~---- 275 (316)
T 1gsa_A 202 PAIKDGDKRVLVVDGEPVPYCLARIPQ--GGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDII---- 275 (316)
T ss_dssp GGGGGCEEEEEEETTEECSEEEEEECC--SSCSCCCGGGTCEEEEEECCHHHHHHHHHHHHHHHHTTCCEEEEEEE----
T ss_pred CCCCCCCEEEEEECCEEeeeEEEEeCC--CCCceeEEccCCccccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEec----
Confidence 97 5899999999999998 9999875 688999999888888999999999999999987 59999999998
Q ss_pred CcEEEeccC
Q 001944 239 RSYVCDVNG 247 (993)
Q Consensus 239 ~syV~DVNG 247 (993)
++||+|||.
T Consensus 276 g~~~iEvN~ 284 (316)
T 1gsa_A 276 GDRLTEINV 284 (316)
T ss_dssp TTEEEEEEC
T ss_pred CCEEEEEcC
Confidence 369999996
No 11
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.64 E-value=3.3e-16 Score=164.90 Aligned_cols=224 Identities=13% Similarity=0.155 Sum_probs=149.6
Q ss_pred CCcCEEeecccCCCChH-HHHHHHhhcCC-cccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 001944 14 PICDCLIAFYSSGYPLE-KAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 91 (993)
Q Consensus 14 P~cD~LIsF~S~GFPL~-KAi~y~~lr~p-~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~ 91 (993)
..+|+.+.-.-.+|.-+ .....++..+. ++-|+..+..++.||..+.++|+++|||+|++.++....
T Consensus 54 ~~~D~v~~~~~~~~ge~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~----------- 122 (307)
T 3r5x_A 54 KDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKME----------- 122 (307)
T ss_dssp TTCSEEEECCCSHHHHSSHHHHHHHHHTCCBSSSCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEESSS-----------
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEeChh-----------
Confidence 46788877553333211 23345666654 455779999999999999999999999999999997621
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCcee
Q 001944 92 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDV 170 (993)
Q Consensus 92 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DI 170 (993)
+....--..++.|+|+||..|. .|-|+. ++.+...... -+. ..+.+..+|+||||+ |+++
T Consensus 123 -~~~~~~~~~~~~P~vvKP~~~~-----------~s~Gv~----~v~~~~el~~-~~~~~~~~~~~~lvee~i~--G~e~ 183 (307)
T 3r5x_A 123 -DLNFDELDKLGFPLVVKPNSGG-----------SSVGVK----IVYDKDELIS-MLETVFEWDSEVVIEKYIK--GEEI 183 (307)
T ss_dssp -CCCHHHHHHHCSSEEEEECC---------------CCCE----EECSHHHHHH-HHHHHHHHCSEEEEEECCC--SEEE
T ss_pred -hhhHHHHHhcCCCEEEEeCCCC-----------CCCCEE----EeCCHHHHHH-HHHHHHhcCCCEEEECCcC--CEEE
Confidence 1110001234689999999985 222331 1222111110 000 112367899999998 8999
Q ss_pred EEEEECCceeEEEeeeCCCCCC--eeeecC-CCCceeeeeeCCHHH----HHHHHHHHHHhCCc-eeEEEEEeeCCCcEE
Q 001944 171 KVYTVGPEYAHAEARKSPVVDG--VVMRNP-DGKEVRYPVLLTPNE----KQMAREVCIAFRQA-VCGFDLLRCEGRSYV 242 (993)
Q Consensus 171 KVytVG~~~vhAe~RKSP~vDG--~vrrN~-~gke~r~~v~Lt~eE----k~iA~ka~~afgq~-VcGfDLLRs~g~syV 242 (993)
+|.++|+++.++..+... .+ .++.+. ++|...+|+.|++++ +++|.++++++|.. +++||++..+|++||
T Consensus 184 ~v~v~~g~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~g~~~v 261 (307)
T 3r5x_A 184 TCSIFDGKQLPIISIRHA--AEFFDYNAKYDDASTIEEVIELPAELKERVNKASLACYKALKCSVYARVDMMVKDGIPYV 261 (307)
T ss_dssp EEEEETTEECCCEEEEEE--EEEETTEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEEEE
T ss_pred EEEEECCEEeeEEEEEcC--CcccChhhcCCCCCCeEecCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEECCeEEE
Confidence 999999988666444442 33 466666 666666799999976 88999999999998 999999999888999
Q ss_pred EeccCc------ccc-----ccccccHHHHHHHHHHHH
Q 001944 243 CDVNGW------SFV-----KNSYKYYDDAACVLRKMF 269 (993)
Q Consensus 243 ~DVNGw------SFV-----K~n~kYYddcA~iL~~~~ 269 (993)
+|||-. |.+ .....|-+-+++||..-+
T Consensus 262 lEiN~rpg~~~~s~~~~~~~~~G~~~~~li~~ll~~a~ 299 (307)
T 3r5x_A 262 MEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 299 (307)
T ss_dssp EEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred EEEcCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999954 221 123456666777766544
No 12
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.61 E-value=2.7e-15 Score=156.61 Aligned_cols=207 Identities=15% Similarity=0.177 Sum_probs=134.6
Q ss_pred CcCEEeecccCCCChH-HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc-
Q 001944 15 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE- 91 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~-KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~- 91 (993)
.+|+++.....+++-+ ...+.++..+ |++-|+.....++.||..+.++|+++|||+|++..+... + +.+.
T Consensus 54 ~~d~v~~~~~~~~~e~~~~~~~~e~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~~~~~~----~---~~~~~ 126 (306)
T 1iow_A 54 GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA----E---FEKGL 126 (306)
T ss_dssp TEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEEEHH----H---HHHCC
T ss_pred CCCEEEEcCCCCCCcchHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCeEEEchh----h---hhccc
Confidence 4687765543333322 1223445444 556699999999999999999999999999999998662 0 0000
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccc-cccCcceEEeeccCCCCcee
Q 001944 92 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRR-VRREGSYIYEEFMPTGGTDV 170 (993)
Q Consensus 92 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~-~r~~gsyIyEEFi~t~G~DI 170 (993)
+..+.---..++.|+|+||..|. .|-|+. ++.+... +..-+.. .+.+..+|+||||+ |+++
T Consensus 127 ~~~~~~~~~~~~~p~vvKP~~g~-----------~~~gv~----~v~~~~e-l~~~~~~~~~~~~~~lvee~i~--g~e~ 188 (306)
T 1iow_A 127 SDKQLAEISALGLPVIVKPSREG-----------SSVGMS----KVVAENA-LQDALRLAFQHDEEVLIEKWLS--GPEF 188 (306)
T ss_dssp CTHHHHHHHTTCSSEEEEETTCC-----------TTTTCE----EESSGGG-HHHHHHHHTTTCSEEEEEECCC--CCEE
T ss_pred hhhhhhHHhccCCCEEEEeCCCC-----------CCCCEE----EeCCHHH-HHHHHHHHHhhCCCEEEEeCcC--CEEE
Confidence 00000001124579999999986 333332 2322221 1100001 12367899999998 8999
Q ss_pred EEEEECCceeEEEeeeCCCCCC--eeeecCCCCcee--eeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEeeC-CCc
Q 001944 171 KVYTVGPEYAHAEARKSPVVDG--VVMRNPDGKEVR--YPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE-GRS 240 (993)
Q Consensus 171 KVytVG~~~vhAe~RKSP~vDG--~vrrN~~gke~r--~~v~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs~-g~s 240 (993)
+|.++|+++.++..+... .+ .++.|.+.|+.. .|..|++ +-+++|.++++++|.. ++|||++.+. |++
T Consensus 189 ~v~~~~g~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~ 266 (306)
T 1iow_A 189 TVAILGEEILPSIRIQPS--GTFYDYEAKFLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQF 266 (306)
T ss_dssp EEEEETTEECCCEEEECS--SSSSCHHHHHTCSCCEEESSCCCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTSCE
T ss_pred EEEEECCCccceEEEEeC--CCeEchhheecCCCeeEEcCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEcCCCCE
Confidence 999999987776655432 22 244555544443 3556775 4578999999999996 9999999984 569
Q ss_pred EEEeccCc
Q 001944 241 YVCDVNGW 248 (993)
Q Consensus 241 yV~DVNGw 248 (993)
||+|||..
T Consensus 267 ~~iEiN~r 274 (306)
T 1iow_A 267 YLLEANTS 274 (306)
T ss_dssp EEEEEESS
T ss_pred EEEEecCC
Confidence 99999954
No 13
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.52 E-value=5.3e-14 Score=150.05 Aligned_cols=207 Identities=14% Similarity=0.069 Sum_probs=128.8
Q ss_pred CcCEEeecccCCCChH-HHHHHHhhcCCcc-cCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 001944 15 ICDCLIAFYSSGYPLE-KAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 92 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~-KAi~y~~lr~p~~-iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 92 (993)
.+|+.+.-.-.+|-.+ .....++..+... -|+..+..++.||..+.++|+++|||+|++.++.... + ..
T Consensus 65 ~~D~v~~~~hg~~ge~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~---~------~~ 135 (317)
T 4eg0_A 65 GFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGD---D------YA 135 (317)
T ss_dssp TCCEEEECCCSGGGTSSHHHHHHHHHTCEESSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEETTS---C------HH
T ss_pred CCCEEEEcCCCCCCchHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEEEECch---h------HH
Confidence 4676654332222211 3455666666544 4788999999999999999999999999999997621 0 11
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 001944 93 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 171 (993)
Q Consensus 93 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DIK 171 (993)
+.+.---..++.|+|+||..|. .|-|+ .++.+...... -+. ....+..+|+||||+. |+++.
T Consensus 136 ~~~~~~~~~~g~PvvvKP~~~~-----------~s~Gv----~~v~~~~el~~-a~~~~~~~~~~~lvEe~i~~-G~E~~ 198 (317)
T 4eg0_A 136 ARATDIVAKLGLPLFVKPASEG-----------SSVAV----LKVKTADALPA-ALSEAATHDKIVIVEKSIEG-GGEYT 198 (317)
T ss_dssp HHHHHHHHHHCSCEEEEECC----------------CC----EEECSGGGHHH-HHHHHTTTCSEEEEEECCCS-SEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCC-----------CCCCE----EEECCHHHHHH-HHHHHHhCCCeEEEEcCCCC-CcEEE
Confidence 1110000235689999999985 22233 12333222111 000 1234678999999987 99999
Q ss_pred EEEECCceeEEEeeeCCCCCC--eeeecCCCCcee--eeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEee-CCCcE
Q 001944 172 VYTVGPEYAHAEARKSPVVDG--VVMRNPDGKEVR--YPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRC-EGRSY 241 (993)
Q Consensus 172 VytVG~~~vhAe~RKSP~vDG--~vrrN~~gke~r--~~v~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs-~g~sy 241 (993)
|.++|+...++..+.+. .+ .++.+.+.++.. .|..|++ +-+++|.++++++|.. +|+||++.+ +|++|
T Consensus 199 v~vl~~~~~~~~~i~~~--~~~~~~~~k~~~g~~~~~~P~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~ 276 (317)
T 4eg0_A 199 ACIAGDLDLPLIKIVPA--GEFYDYHAKYVANDTQYLIPCGLPAEQETELKRIARRAFDVLGCTDWGRADFMLDAAGNAY 276 (317)
T ss_dssp EEEETTCCCCCEEEEC-----------------CEEESSCSSCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECTTCCEE
T ss_pred EEEECCcccceEEEeeC--CceechhhcccCCCeeEEcCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEE
Confidence 99999987777666542 22 133444444443 3555775 4578899999999996 999999988 56699
Q ss_pred EEeccCcc
Q 001944 242 VCDVNGWS 249 (993)
Q Consensus 242 V~DVNGwS 249 (993)
|+|||-.+
T Consensus 277 vlEiN~~p 284 (317)
T 4eg0_A 277 FLEVNTAP 284 (317)
T ss_dssp EEEEESSC
T ss_pred EEEeeCCC
Confidence 99999543
No 14
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.49 E-value=2.1e-13 Score=146.62 Aligned_cols=198 Identities=16% Similarity=0.255 Sum_probs=133.7
Q ss_pred CcCEEeecccCCCChH-HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 001944 15 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 92 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~-KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 92 (993)
.+|+.+.-....+-.+ .....++..+ |++-++..+..++.||..+.++|+++|||+|++..+.+.. .
T Consensus 76 ~~D~v~~~~hg~~gedg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~----------~- 144 (322)
T 2fb9_A 76 RYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVAVRKGE----------P- 144 (322)
T ss_dssp TCSEEEEECCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEETTS----------C-
T ss_pred CCCEEEEeCCCCCCccHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEECch----------h-
Confidence 5798887654333322 3344556555 5555789999999999999999999999999999997621 1
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCC-cee
Q 001944 93 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGG-TDV 170 (993)
Q Consensus 93 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G-~DI 170 (993)
+.+ .++.|+|+||..|. .|-|+. ++.|... +..-+. ..+.+..+|+||||+ | +++
T Consensus 145 ~~~-----~~g~PvvvKP~~g~-----------~s~Gv~----~v~~~~e-l~~a~~~~~~~~~~vlvEe~I~--G~~E~ 201 (322)
T 2fb9_A 145 PVV-----PFDPPFFVKPANTG-----------SSVGIS----RVERFQD-LEAALALAFRYDEKAVVEKALS--PVREL 201 (322)
T ss_dssp CCC-----CSCSCEEEEETTCC-----------TTTTCE----EESSHHH-HHHHHHHHTTTCSEEEEEECCS--SCEEE
T ss_pred hhh-----ccCCCEEEEeCCCC-----------CCCCEE----EECCHHH-HHHHHHHHHhcCCeEEEEeCCC--CCeeE
Confidence 111 45689999999986 233332 2322221 111000 112467899999996 7 999
Q ss_pred EEEEECCc---eeEEEeeeCCCCCCe--eeecCCCCce--eeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEeeCC
Q 001944 171 KVYTVGPE---YAHAEARKSPVVDGV--VMRNPDGKEV--RYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEG 238 (993)
Q Consensus 171 KVytVG~~---~vhAe~RKSP~vDG~--vrrN~~gke~--r~~v~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs~g 238 (993)
.|.++|.. +.++..+... .+. ++.+.+.+.. ..|..|++ +-+++|.++++++|. .+|+||++..+|
T Consensus 202 ~v~vl~~~~~~~~~~~ei~~~--~~~~~~~~k~~~g~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~g 279 (322)
T 2fb9_A 202 EVGVLGNVFGEASPVGEVRYE--APFYDYETKYTPGRAELLIPAPLDPGTQETVQELALKAYKVLGVRGMARVDFFLAEG 279 (322)
T ss_dssp EEEEESSSSCEEEEEEEEEEE--CCEEETTTEEECCEEEEESSCCCCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEEETT
T ss_pred EEEEEeCCCceEeeeEEEeeC--CCccCHHHcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEECC
Confidence 99999985 5555444431 111 2223333333 34666776 678899999999999 899999999866
Q ss_pred CcEEEeccCc
Q 001944 239 RSYVCDVNGW 248 (993)
Q Consensus 239 ~syV~DVNGw 248 (993)
++||+|||-.
T Consensus 280 ~~~vlEiN~r 289 (322)
T 2fb9_A 280 ELYLNELNTI 289 (322)
T ss_dssp EEEEEEEESS
T ss_pred cEEEEEEECC
Confidence 7999999953
No 15
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.46 E-value=7.7e-13 Score=142.80 Aligned_cols=200 Identities=15% Similarity=0.215 Sum_probs=130.3
Q ss_pred CcCEEeecccCCCChH-HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 001944 15 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 92 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~-KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 92 (993)
.+|++|.-....|-.+ .....++..+ |++-|+..+..+++||..+.++|+++|||+|++..+.+..
T Consensus 90 ~~D~v~~~~~g~~ged~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~------------ 157 (343)
T 1e4e_A 90 HVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDD------------ 157 (343)
T ss_dssp ECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEECTTC------------
T ss_pred cCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCcCCEEEEechh------------
Confidence 4687776643222111 2334455544 5666899999999999999999999999999999986621
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 001944 93 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 171 (993)
Q Consensus 93 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DIK 171 (993)
+ +. . ..+++|+|+||..|. .|-|+. ++.+...... -+. ..+.+..+|+||||+ |+++.
T Consensus 158 ~-~~-~-~~~~~PvvvKP~~~~-----------~s~Gv~----~v~~~~el~~-a~~~~~~~~~~~lvEe~I~--G~E~~ 216 (343)
T 1e4e_A 158 R-PV-A-ATFTYPVFVKPARSG-----------SSFGVK----KVNSADELDY-AIESARQYDSKILIEQAVS--GCEVG 216 (343)
T ss_dssp C-CC-G-GGSCSCEEEEESSCC-----------TTTTCE----EECSGGGHHH-HHHHHTTTCSSEEEEECCC--SEEEE
T ss_pred h-hh-h-hccCCCEEEEeCCCC-----------CCCCEE----EeCCHHHHHH-HHHHHHhcCCcEEEEeCcC--CeEEE
Confidence 1 11 0 346689999999985 233332 2332221111 000 112467899999997 89999
Q ss_pred EEEECCc----eeEEEeeeCCCCCCeeeecCC----CCcee--eeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEee
Q 001944 172 VYTVGPE----YAHAEARKSPVVDGVVMRNPD----GKEVR--YPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRC 236 (993)
Q Consensus 172 VytVG~~----~vhAe~RKSP~vDG~vrrN~~----gke~r--~~v~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs 236 (993)
|.++|.. +.....+...----.++.+.+ .|+.. .|..|++ +-+++|.++++++|.. +|+||++..
T Consensus 217 v~vl~~~~~~~~~~~~ei~~~~~~~~~~~k~~~~~~~g~~~~~~p~~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~ 296 (343)
T 1e4e_A 217 CAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQ 296 (343)
T ss_dssp EEEEEETTCCEECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEC
T ss_pred EEEEeCCCCeEEeeeEEEeeCCCccCHhhcccccCCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEe
Confidence 9999865 233333332100012344554 44433 4555775 6788999999999994 999999997
Q ss_pred -CCCcEEEeccC
Q 001944 237 -EGRSYVCDVNG 247 (993)
Q Consensus 237 -~g~syV~DVNG 247 (993)
+|.+||+|||-
T Consensus 297 ~~g~~~viEiN~ 308 (343)
T 1e4e_A 297 DNGRIVLNEVNT 308 (343)
T ss_dssp TTCCEEEEEEES
T ss_pred CCCCEEEEEeeC
Confidence 46699999994
No 16
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.46 E-value=3.9e-13 Score=148.12 Aligned_cols=223 Identities=14% Similarity=0.175 Sum_probs=143.2
Q ss_pred CcCEEeecccCCCChH-HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 001944 15 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 92 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~-KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 92 (993)
.+|+.|.-.-..+..+ .....++..+ |++-|+..+..++.||..+.++|+++|||+|++.++.+.. ..
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~----------~~ 176 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYVLLNEKN----------RA 176 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHHTTCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCCEEECTTT----------GG
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCcCCCCEEEEeCCc----------hH
Confidence 4687777644334443 3455566666 4556999999999999999999999999999999986621 11
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCC-ce-
Q 001944 93 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGG-TD- 169 (993)
Q Consensus 93 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G-~D- 169 (993)
+... -..++.|+|+||..|. .|-|+. ++.|... +..-+. ..+.+..+|+||||+ | ++
T Consensus 177 ~~~~--~~~lg~PvvVKP~~g~-----------ss~Gv~----~v~~~~e-l~~a~~~~~~~~~~vlVEe~I~--G~~E~ 236 (367)
T 2pvp_A 177 NALD--LMNFNFPFIVKPSNAG-----------SSLGVN----VVKEEKE-LIYALDSAFEYSKEVLIEPFIQ--GVKEY 236 (367)
T ss_dssp GHHH--HCCSCSCEEEEESSCC-----------TTTTCE----EESSTTS-HHHHHHHHTTTCSCEEEEECCT--TCEEE
T ss_pred HHHH--HhccCCCEEEEECCCC-----------CCCCEE----EECCHHH-HHHHHHHHHhcCCcEEEEeCCC--CCcee
Confidence 2222 1235689999999985 333432 2333322 111111 112367899999997 7 89
Q ss_pred --eEEEEECCceeEEEeeeCCCCCCe--eeecCCCCc--eeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEeeCC
Q 001944 170 --VKVYTVGPEYAHAEARKSPVVDGV--VMRNPDGKE--VRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEG 238 (993)
Q Consensus 170 --IKVytVG~~~vhAe~RKSP~vDG~--vrrN~~gke--~r~~v~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs~g 238 (993)
+.|.+ +++.+....+..|. .|. ++.+.+.++ ...|..|++ +-+++|.++++++|.. +|+||++..+|
T Consensus 237 svi~v~v-~g~~~~~~~ei~~~-~~~~d~~~ky~~g~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~g 314 (367)
T 2pvp_A 237 NLAGCKI-KKDFCFSYIEEPNK-QEFLDFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVIEN 314 (367)
T ss_dssp EEEEEEE-TTEEEEEEEEETTT-TEEECCCCSSCCSCCCSCCCCCCCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEETT
T ss_pred eEEEEEE-CCEEEEEEEEEecC-CceEcccccccCCCeeEEecCCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEECC
Confidence 88887 77744443344441 222 234444333 345777885 4678999999999975 99999999877
Q ss_pred CcEEEeccCc-cccccccccHHHHHHHHHHHHHH
Q 001944 239 RSYVCDVNGW-SFVKNSYKYYDDAACVLRKMFLE 271 (993)
Q Consensus 239 ~syV~DVNGw-SFVK~n~kYYddcA~iL~~~~l~ 271 (993)
++||+|||-- .+- ....|-+-+.++..++..
T Consensus 315 ~~~vlEiN~rpg~t--~~s~~p~~~~l~~~li~~ 346 (367)
T 2pvp_A 315 EVYLNEINPIPGSL--ANYLFDDFKTTLENLAQS 346 (367)
T ss_dssp EEEEEEEESSCGGG--GGGGSSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCC--cccccCCHHHHHHHHHhC
Confidence 8999999953 221 111222445566665544
No 17
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.46 E-value=4.6e-13 Score=147.30 Aligned_cols=207 Identities=17% Similarity=0.201 Sum_probs=135.7
Q ss_pred CCcCEEeecccCCCChH-HHHHHHhhcCC-cccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 001944 14 PICDCLIAFYSSGYPLE-KAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 91 (993)
Q Consensus 14 P~cD~LIsF~S~GFPL~-KAi~y~~lr~p-~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~ 91 (993)
..+|+++.-+--.+..+ .....++..+. ++-|+..+..++.||..+.++|+++|||+|++.++.+.. + .
T Consensus 92 ~~~D~v~~~~~g~~gedg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~---~------~ 162 (377)
T 1ehi_A 92 GDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPES---A------N 162 (377)
T ss_dssp CCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHTTTCCCCCEEEECTTG---G------G
T ss_pred cCCCEEEEecCCCCCcCHHHHHHHHHcCCCEeCcCHHHHHHHcCHHHHHHHHHHcCCCCCCEEEEeccc---c------c
Confidence 35898887654334433 34455666664 445999999999999999999999999999999987621 0 0
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCC-ce
Q 001944 92 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGG-TD 169 (993)
Q Consensus 92 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G-~D 169 (993)
+..+.---..+++|+|+||..|. .|-|+. ++.|... +..-+. ....+..+|+||||+ | ++
T Consensus 163 ~~~~~~~~~~~g~PvvVKP~~~~-----------~s~Gv~----~v~~~~e-l~~a~~~~~~~~~~vlvEe~I~--G~~E 224 (377)
T 1ehi_A 163 NWSWDKIVAELGNIVFVKAANQG-----------SSVGIS----RVTNAEE-YTEALSDSFQYDYKVLIEEAVN--GARE 224 (377)
T ss_dssp GCCHHHHHHHHCSCEEEEESSCC-----------TTTTEE----EECSHHH-HHHHHHHHTTTCSCEEEEECCC--CSCE
T ss_pred hHHHHHHHHhcCCCEEEEeCCCC-----------CCcCEE----EeCCHHH-HHHHHHHHHhcCCcEEEEcCCC--CCce
Confidence 00111001235689999999985 233332 2322211 110000 112356899999996 7 99
Q ss_pred eEEEEECCc---eeEEEeeeCCC---CCCee--eecCCCC-ce--eeeeeCCHH----HHHHHHHHHHHhCCc-eeEEEE
Q 001944 170 VKVYTVGPE---YAHAEARKSPV---VDGVV--MRNPDGK-EV--RYPVLLTPN----EKQMAREVCIAFRQA-VCGFDL 233 (993)
Q Consensus 170 IKVytVG~~---~vhAe~RKSP~---vDG~v--rrN~~gk-e~--r~~v~Lt~e----Ek~iA~ka~~afgq~-VcGfDL 233 (993)
+.|.++|+. +.+...+.... ..|.+ +.+.+.+ +. ..|..|+++ -+++|.++++++|.. +|+||+
T Consensus 225 ~~v~vl~~~~~~~~~~~ei~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~ 304 (377)
T 1ehi_A 225 LEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDF 304 (377)
T ss_dssp EEEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEEEcCCCcEEEeeEEEEecCCCCcCceeCHHhcccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999874 66665555410 12222 2333333 33 346678865 477999999999997 999999
Q ss_pred Eee-CCCcEEEeccC
Q 001944 234 LRC-EGRSYVCDVNG 247 (993)
Q Consensus 234 LRs-~g~syV~DVNG 247 (993)
+.. +|++||+|||-
T Consensus 305 ~~~~~g~~~vlEiN~ 319 (377)
T 1ehi_A 305 LLDENNVPYLGEPNT 319 (377)
T ss_dssp EECTTCCEEEEEEES
T ss_pred EEeCCCCEEEEEEeC
Confidence 997 46799999994
No 18
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.44 E-value=2.6e-13 Score=145.59 Aligned_cols=171 Identities=19% Similarity=0.196 Sum_probs=123.4
Q ss_pred CCcCEE--eecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 001944 14 PICDCL--IAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 91 (993)
Q Consensus 14 P~cD~L--IsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~ 91 (993)
+.||+. |++-.+| -|....+.++..++++.|+..+..+++||..+.++|++ |||+|++.+.
T Consensus 68 ~~~D~~~~i~~~ed~-~l~~~~~~l~~~g~~~g~~~~~~~~~~dK~~~~~~l~~-Gip~p~~~~~--------------- 130 (305)
T 3df7_A 68 EKSDAFLIIAPEDDF-LLYTLTKKAEKYCENLGSSSRAIAVTSDKWELYKKLRG-EVQVPQTSLR--------------- 130 (305)
T ss_dssp TTCSEEEEECCCGGG-HHHHHHHHHHTTSEESSCCHHHHHHHTSHHHHHHHHTT-TSCCCCEESS---------------
T ss_pred HhcCEEEEEccCCcH-HHHHHHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHh-CCCCCCEecc---------------
Confidence 567763 3333333 45567777777777999999999999999999999999 9999999741
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 001944 92 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 171 (993)
Q Consensus 92 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIK 171 (993)
.++.|+|+||..|. .|-|+. ++.+ .+..+|+||||+ |+++.
T Consensus 131 ---------~~~~P~vvKP~~g~-----------gs~Gv~----~v~~-------------~~~~~lvEe~I~--G~e~s 171 (305)
T 3df7_A 131 ---------PLDCKFIIKPRTAC-----------AGEGIG----FSDE-------------VPDGHIAQEFIE--GINLS 171 (305)
T ss_dssp ---------CCSSSEEEEESSCC---------------CB----CCSS-------------CCTTEEEEECCC--SEEEE
T ss_pred ---------cCCCCEEEEeCCCC-----------CCCCEE----EEec-------------CCCCEEEEeccC--CcEEE
Confidence 13479999999986 333332 2332 367799999999 89999
Q ss_pred EEEECCceeEEEeeeCCCCCCeeeecC-CCCceeeeeeCC----HHHHHHHHHHHHHh-C-CceeEEEEEeeCCCcEEEe
Q 001944 172 VYTVGPEYAHAEARKSPVVDGVVMRNP-DGKEVRYPVLLT----PNEKQMAREVCIAF-R-QAVCGFDLLRCEGRSYVCD 244 (993)
Q Consensus 172 VytVG~~~vhAe~RKSP~vDG~vrrN~-~gke~r~~v~Lt----~eEk~iA~ka~~af-g-q~VcGfDLLRs~g~syV~D 244 (993)
|.+++++.+++..+... +..+. ..+. ..|..|+ ++-+++|.++++++ | ..++|||++.+ |++||+|
T Consensus 172 v~v~~g~~~~~~~~~~~-----~~~~~~~~g~-~~p~~l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~-~~~~viE 244 (305)
T 3df7_A 172 VSLAVGEDVKCLSVNEQ-----IINNFRYAGA-VVPARISDEVKREVVEEAVRAVECVEGLNGYVGVDIVYS-DQPYVIE 244 (305)
T ss_dssp EEEEESSSEEEEEEEEE-----EEETTEEEEE-EESCCCCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEEES-SSEEEEE
T ss_pred EEEEeCCeEEEEEEeeE-----eccCceeccc-cccCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEC-CCEEEEE
Confidence 99997555555443211 12211 1122 3466677 57788999999999 8 46999999996 8899999
Q ss_pred ccC
Q 001944 245 VNG 247 (993)
Q Consensus 245 VNG 247 (993)
||-
T Consensus 245 iNp 247 (305)
T 3df7_A 245 INA 247 (305)
T ss_dssp EES
T ss_pred EcC
Confidence 993
No 19
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.42 E-value=1.8e-12 Score=140.54 Aligned_cols=199 Identities=17% Similarity=0.260 Sum_probs=130.6
Q ss_pred cCEEeecccCCCChH-HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 16 CDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 16 cD~LIsF~S~GFPL~-KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
+|+.+.-.--.+.-+ ....+++..+ ||+-++..+..++.||..+.++|+++|||+|++..+.... ..
T Consensus 91 ~D~v~~~lhG~~gedg~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~-----------~~ 159 (346)
T 3se7_A 91 LDLVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFWTVTADE-----------KI 159 (346)
T ss_dssp CSEEEECCCSTTTTSSHHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEEETTS-----------CC
T ss_pred CCEEEEccCCCCCCChHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEcCcH-----------HH
Confidence 677776653333333 4556776666 5666779999999999999999999999999999997721 01
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEE
Q 001944 94 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKV 172 (993)
Q Consensus 94 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DIKV 172 (993)
.-..++.|+|+||..|. .|-|+. ++.+... +..-+. ..+.+..+|+||||+ |+++.|
T Consensus 160 ----~~~~lg~PvvvKP~~~~-----------~s~Gv~----~v~~~~e-l~~a~~~~~~~~~~vlvEe~I~--G~E~~v 217 (346)
T 3se7_A 160 ----PTDQLTYPVFVKPARSG-----------SSFGVS----KVAREED-LQGAVEAAREYDSKVLIEEAVI--GTEIGC 217 (346)
T ss_dssp ----CTTTCCSSEEEEESSCC-----------TTTTCE----EECSHHH-HHHHHHHHTTTCSEEEEEECCC--SEEEEE
T ss_pred ----HHHhcCCCEEEEeCCCC-----------CCcCEE----EECCHHH-HHHHHHHHHhCCCcEEEEeCcC--CEEEEE
Confidence 11235689999999985 233332 1322211 111000 123467899999998 899999
Q ss_pred EEECCc---eeEEEeeeCCCCCCee------eecCC--CCceeeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEee
Q 001944 173 YTVGPE---YAHAEARKSPVVDGVV------MRNPD--GKEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRC 236 (993)
Q Consensus 173 ytVG~~---~vhAe~RKSP~vDG~v------rrN~~--gke~r~~v~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs 236 (993)
.++|.. .+....+..+. ++.+ ..... +.....|..|++ +-+++|.++++++|. .+++||++..
T Consensus 218 ~vl~~~~~~~~~~~~e~~~~-~~~~d~~q~~~~ky~~~~~~~~~pa~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~ 296 (346)
T 3se7_A 218 AVMGNGPELITGEVDQITLS-HGFFKIHQESTPESGSDNSAVTVPADISTTSRSLVQDTAKAVYRALGCRGLSRVDLFLT 296 (346)
T ss_dssp EEEEETTEEEECCCEEECCC---------------CGGGSCEESSCCCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEC
T ss_pred EEEecCCCeEEEeeEEEecC-CCCcCcccchhccccCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEe
Confidence 999874 33334444431 2211 22222 122344677887 667899999999999 6999999988
Q ss_pred C-CCcEEEeccCc
Q 001944 237 E-GRSYVCDVNGW 248 (993)
Q Consensus 237 ~-g~syV~DVNGw 248 (993)
. |.+||+|||..
T Consensus 297 ~~g~~~vlEiN~r 309 (346)
T 3se7_A 297 EDGKVVLNEVNTF 309 (346)
T ss_dssp TTSCEEEEEEESS
T ss_pred CCCCEEEEEEeCC
Confidence 5 55999999943
No 20
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.42 E-value=9.4e-13 Score=143.42 Aligned_cols=209 Identities=14% Similarity=0.170 Sum_probs=128.8
Q ss_pred CCcCEEeecccCCCChH-HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 001944 14 PICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 91 (993)
Q Consensus 14 P~cD~LIsF~S~GFPL~-KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~ 91 (993)
..+|+++.-+-..+..+ .....++..+ |++-++..+..++.||..+.++|+++|||+|++..+.+...... . .
T Consensus 86 ~~~D~v~~~~~g~~~ed~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~----~-~ 160 (364)
T 2i87_A 86 QPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKY----E-H 160 (364)
T ss_dssp SBCSEEEEECCCSSSCTTHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEEEEEHHHHHHH----H-H
T ss_pred cCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhhccc----c-h
Confidence 35788876553223332 2334455555 55567799999999999999999999999999999876210000 0 0
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCcee
Q 001944 92 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDV 170 (993)
Q Consensus 92 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DI 170 (993)
++...+ -..++.|+|+||..|. .|-|+. ++.+... +..-+. ..+.+..+|+||||+ |+++
T Consensus 161 ~~~~~~-~~~~g~PvvvKP~~g~-----------~s~Gv~----~v~~~~e-l~~a~~~~~~~~~~~lvEe~I~--G~E~ 221 (364)
T 2i87_A 161 NILKLV-NDKLNYPVFVKPANLG-----------SSVGIS----KCNNEAE-LKEGIKEAFQFDRKLVIEQGVN--AREI 221 (364)
T ss_dssp HHHHHH-HHHCCSSEEEEESSCS-----------SCTTCE----EESSHHH-HHHHHHHHHTTCSEEEEEECCC--CEEE
T ss_pred hHHHHH-HHhcCCCEEEEeCCCC-----------CCCCEE----EECCHHH-HHHHHHHHHhcCCeEEEEeCcc--CeEE
Confidence 011111 0134679999999986 333432 2322221 110000 112467899999998 8999
Q ss_pred EEEEECCc---eeEEEeeeCCCCCC--eeeecCCCCce--eeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEee-C
Q 001944 171 KVYTVGPE---YAHAEARKSPVVDG--VVMRNPDGKEV--RYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRC-E 237 (993)
Q Consensus 171 KVytVG~~---~vhAe~RKSP~vDG--~vrrN~~gke~--r~~v~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs-~ 237 (993)
.|.++|+. +++...+... .+ .+..+.+.|.. ..|..|++ +-+++|.++++++|. .+++||++.. +
T Consensus 222 ~v~vl~~~~~~~~~~~e~~~~--~~~~~~~~k~~~g~~~~~~pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~ 299 (364)
T 2i87_A 222 EVAVLGNDYPEATWPGEVVKD--VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTED 299 (364)
T ss_dssp EEEEEESSSCEECCCEEECCS--CCC-----------CCEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTT
T ss_pred EEEEEcCCCcEEeeeEEEecC--CCcCCHHHcccCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEecC
Confidence 99999875 4444444321 12 13444443432 34666776 668899999999999 6999999997 4
Q ss_pred CCcEEEeccCc
Q 001944 238 GRSYVCDVNGW 248 (993)
Q Consensus 238 g~syV~DVNGw 248 (993)
|++||+|||..
T Consensus 300 g~~~viEiN~r 310 (364)
T 2i87_A 300 NQIYINETNAM 310 (364)
T ss_dssp CCEEEEEEESS
T ss_pred CCEEEEEEeCC
Confidence 66999999953
No 21
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.34 E-value=1.3e-11 Score=133.36 Aligned_cols=192 Identities=16% Similarity=0.185 Sum_probs=114.1
Q ss_pred CcCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 001944 15 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 94 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 94 (993)
.||+++.-+.+ .+. ..+++++. ++.|+..+..+++||..+.++|+++|||+|++..+. .. +..++
T Consensus 57 ~~d~v~~~~e~-~~~-~~~~~l~~---~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~-~~---------~~~~~ 121 (365)
T 2z04_A 57 SCDIITYEFEH-IKD-EVLEKCES---KLIPNPQALYVKKSRIREKLFLKKHGFPVPEFLVIK-RD---------EIIDA 121 (365)
T ss_dssp HCSEEEESSSC-CCH-HHHHHHTT---TBSSCTHHHHHHTCHHHHHHHHHTTTCCCCCEEEC------------------
T ss_pred cCCEEEECCCC-CcH-HHHHHHhh---hcCCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEEc-HH---------HHHHH
Confidence 47888876644 333 35565543 889999999999999999999999999999999875 21 11122
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEE
Q 001944 95 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 174 (993)
Q Consensus 95 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVyt 174 (993)
+. .+++|+|+||..|. | .|-|+. +.+........+. ....+..+|+||||+. |.++.|.+
T Consensus 122 ~~----~~~~P~vvKp~~~~------~----~g~Gv~-~v~~~~el~~~~~----~~~~~~~~lvEe~i~~-g~e~sv~~ 181 (365)
T 2z04_A 122 LK----SFKLPVVIKAEKLG------Y----DGKGQY-RIKKLEDANQVVK----NHDKEESFIIEEFVKF-EAEISCIG 181 (365)
T ss_dssp ----------CEEEECC---------------------------------------------CEEEECCCC-SEEEEEEE
T ss_pred HH----hcCCCEEEEEcCCC------c----CCCCeE-EECCHHHHHHHHH----HhccCCCEEEEccCCC-CEEEEEEE
Confidence 22 34579999999875 1 233443 3332211111111 1213578999999985 89999999
Q ss_pred ECC---ceeEE-EeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCc-eeEEEEEeeC-CCcEEEeccCc
Q 001944 175 VGP---EYAHA-EARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRCE-GRSYVCDVNGW 248 (993)
Q Consensus 175 VG~---~~vhA-e~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~afgq~-VcGfDLLRs~-g~syV~DVNGw 248 (993)
+++ +++.. ..++ +.++......-.|..|.++.+++|.++++++|.. ++++|++.+. |++||+|||--
T Consensus 182 ~~d~~G~~~~~~~~~~-------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~lg~~G~~~vd~~~~~~g~~~~iEiN~R 254 (365)
T 2z04_A 182 VRDREGKTYFYPQPFN-------KHEEGILIYNYVPYAKLKEAEEITKRLMELLDIVGVFTVEFFLLKDGRVLINEFAPR 254 (365)
T ss_dssp EECTTCCEEECCEEEE-------EEETTEEEEEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEEEEESS
T ss_pred EECCCCCEEEECCEEE-------EEeCCEeEEEECCHhHHHHHHHHHHHHHHHcCCEEEEEEEEEEeCCCcEEEEEeccC
Confidence 863 33321 1111 2222111123446666889999999999999995 9999999984 55999999964
No 22
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=99.34 E-value=6.2e-12 Score=136.90 Aligned_cols=187 Identities=21% Similarity=0.251 Sum_probs=125.3
Q ss_pred cCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 001944 16 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 95 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 95 (993)
||++|..+ ++++..+.++++..+..+.|+..+..+++||..+.++|+++|||+|++..+... ++++
T Consensus 63 ~d~v~~~~--e~~~~~~~~~l~~~gi~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------------~~~~ 128 (380)
T 3ax6_A 63 SDVTTYDL--EHIDVQTLKKLYNEGYKIHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKLVKDL------------ESDV 128 (380)
T ss_dssp CSEEEESC--SCSCHHHHHHHHHTTCEESSCHHHHHHHHSHHHHHHHHHHTTCCCCCEEECSSH------------HHHH
T ss_pred CCEEEecc--cCCCHHHHHHHHHCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEeCCH------------HHHH
Confidence 78887655 344556677887777556799999999999999999999999999999987551 1222
Q ss_pred eecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEE
Q 001944 96 EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV 175 (993)
Q Consensus 96 ~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVytV 175 (993)
..++.|+|+||..|. | .|.|+ ..+.+... +.. .++ ..+|+||||+. |.++.|.++
T Consensus 129 ----~~~~~P~vvKp~~~~------y----~g~Gv----~~v~~~~e-l~~---~~~--~~~lvEe~i~~-g~e~sv~~~ 183 (380)
T 3ax6_A 129 ----REFGFPVVQKARKGG------Y----DGRGV----FIIKNEKD-LEN---AIK--GETYLEEFVEI-EKELAVMVA 183 (380)
T ss_dssp ----HTTCSSEEEEESCCC---------------E----EEECSGGG-GGG---CCC--SSEEEEECCCE-EEEEEEEEE
T ss_pred ----HhcCCCEEEEecCCC------C----CCCCe----EEECCHHH-HHH---Hhc--CCEEEEeccCC-CeeEEEEEE
Confidence 134679999999874 0 12233 22433322 111 122 78999999975 899999998
Q ss_pred CC---ceeE-EEeeeC--CCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEeeC-CCcEEE
Q 001944 176 GP---EYAH-AEARKS--PVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCE-GRSYVC 243 (993)
Q Consensus 176 G~---~~vh-Ae~RKS--P~vDG~vrrN~~gke~r~~v~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs~-g~syV~ 243 (993)
+. ++.. ...++- + ..|.. ...-.|..|++ +-+++|.++++++|. .++++|++.+. |++||+
T Consensus 184 ~~~~G~~~~~~~~~~~~~~-~~~~~------~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~~g~~~vi 256 (380)
T 3ax6_A 184 RNEKGEIACYPVVEMYFDE-DANIC------DTVIAPARIEEKYSKIAREIATSVVEALEGVGIFGIEMFLTKQGEILVN 256 (380)
T ss_dssp ECSSCCEEEEEEEEEC---------------CEEEESCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTSCEEEE
T ss_pred ECCCCCEEEECCeeeeecc-cCCee------EEEECCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcEEEE
Confidence 64 3322 111111 1 01111 12234666776 567889999999999 49999999985 559999
Q ss_pred eccCc
Q 001944 244 DVNGW 248 (993)
Q Consensus 244 DVNGw 248 (993)
|||.-
T Consensus 257 EiN~R 261 (380)
T 3ax6_A 257 EIAPR 261 (380)
T ss_dssp EEESS
T ss_pred EecCC
Confidence 99964
No 23
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.33 E-value=2.2e-12 Score=139.92 Aligned_cols=194 Identities=16% Similarity=0.128 Sum_probs=128.7
Q ss_pred CcCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 001944 15 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 94 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 94 (993)
.||++|..+ ++++..++++++..+ ++.|+..+..+++||..+.++|+++|||+|++..+... ++.
T Consensus 59 ~~d~v~~~~--e~~~~~~~~~l~~~g-~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~~ 123 (369)
T 3aw8_A 59 GLALVTYEF--ENVPVEAARRLEGRL-PLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHPVDGP------------EDL 123 (369)
T ss_dssp TCSEEEECC--TTCCHHHHHHHHHHS-CBSSCHHHHHHHTCHHHHHHHHHHHTCCCCCEEEESSH------------HHH
T ss_pred CCCEEEECC--CCcCHHHHHHHHHcC-CcCCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeeCCH------------HHH
Confidence 478887655 455667777888888 89999999999999999999999999999999988551 122
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEE
Q 001944 95 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 174 (993)
Q Consensus 95 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVyt 174 (993)
.... ..+++|+|+||..|. | .|.|+ +.+.|... +..-.... .+..+|+||||+. |+++.|.+
T Consensus 124 ~~~~-~~~g~P~vvKp~~~~------~----~g~Gv----~~v~~~~e-l~~~~~~~-~~~~~lvEe~i~~-g~e~sv~~ 185 (369)
T 3aw8_A 124 EEGL-KRVGLPALLKTRRGG------Y----DGKGQ----ALVRTEEE-ALEALKAL-GGRGLILEGFVPF-DREVSLLA 185 (369)
T ss_dssp HHHH-TTTCSSEEEEECCC----------------E----EEECSHHH-HHHHHTTT-CSSSEEEEECCCC-SEEEEEEE
T ss_pred HHHH-HHcCCCEEEEEcCCC------C----CcceE----EEECCHHH-HHHHHHhc-CCCcEEEEEcCCC-CEEEEEEE
Confidence 2111 125689999999875 1 12222 11322211 11000011 1567999999985 89999998
Q ss_pred ECC---ceeEEEeeeCCCCCCeeeecCCCCceeeeee-CCH----HHHHHHHHHHHHhCCc-eeEEEEEeeCCCcEEEec
Q 001944 175 VGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDV 245 (993)
Q Consensus 175 VG~---~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~-Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs~g~syV~DV 245 (993)
+++ +++ +..+ ...+.++..+...-.|.. |++ +-+++|.++++++|.. ++++|++.+.|++||+||
T Consensus 186 ~~d~~G~~~-~~~~-----~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~~~~~viEi 259 (369)
T 3aw8_A 186 VRGRTGEVA-FYPL-----VENRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQVGEELLFNEM 259 (369)
T ss_dssp EECTTSCEE-ECCC-----EEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTEEEEEEE
T ss_pred EECCCCCEE-EECC-----eeeeeeCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEECCcEEEEEE
Confidence 874 333 2211 112323222222233455 665 4577889999999996 999999998888999999
Q ss_pred cC
Q 001944 246 NG 247 (993)
Q Consensus 246 NG 247 (993)
|-
T Consensus 260 N~ 261 (369)
T 3aw8_A 260 AP 261 (369)
T ss_dssp ES
T ss_pred eC
Confidence 95
No 24
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.32 E-value=4.2e-12 Score=140.72 Aligned_cols=193 Identities=15% Similarity=0.178 Sum_probs=127.0
Q ss_pred CcCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHH-HhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 15 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL-~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
.||++|..+ ++++..+.+.++..+.++.|+.....+++||..+.++| +++|||+|++..+... ++
T Consensus 82 ~~d~V~~~~--e~~~~~~~~~l~~~gi~~~~~~~~~~~~~dK~~~k~~l~~~~gip~p~~~~~~~~------------~~ 147 (433)
T 2dwc_A 82 KPDAIIPEI--EAINLDALFEFEKDGYFVVPNARATWIAMHRERLRETLVKEAKVPTSRYMYATTL------------DE 147 (433)
T ss_dssp CCSEEEECS--SCSCHHHHHHHHHTTCCBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEEEESSH------------HH
T ss_pred CCCEEEECc--ccCCHHHHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHhcCCCCCCeeEeCCH------------HH
Confidence 489888876 46655667777777767789999999999999999999 8999999999988541 11
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-----cCcceEEeeccCCCCc
Q 001944 94 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-----REGSYIYEEFMPTGGT 168 (993)
Q Consensus 94 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-----~~gsyIyEEFi~t~G~ 168 (993)
.... -..+++|+|+||..|. .|-|+ +.+.+... +..-+.... .++.+|+||||+. |.
T Consensus 148 ~~~~-~~~~g~P~vvKp~~g~-----------gg~Gv----~~v~~~~e-l~~~~~~~~~~~~~~~~~~lvEe~i~~-g~ 209 (433)
T 2dwc_A 148 LYEA-CEKIGYPCHTKAIMSS-----------SGKGS----YFVKGPED-IPKAWEEAKTKARGSAEKIIVEEHIDF-DV 209 (433)
T ss_dssp HHHH-HHHHCSSEEEEECCC---------------------EEECSGGG-HHHHHHC---------CCEEEEECCCC-SE
T ss_pred HHHH-HHhcCCCEEEEECCCc-----------CCCCe----EEECCHHH-HHHHHHHHHhhcccCCCCEEEEccCCC-Ce
Confidence 1111 1135689999999875 22233 22332221 110000111 2567999999986 88
Q ss_pred eeEEEEEC-----CceeEEEe----eeCCCCCCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhCC-ceeEEEEE
Q 001944 169 DVKVYTVG-----PEYAHAEA----RKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLL 234 (993)
Q Consensus 169 DIKVytVG-----~~~vhAe~----RKSP~vDG~vrrN~~gke~r~~v~Lt~e----Ek~iA~ka~~afgq-~VcGfDLL 234 (993)
++.|.+++ ++.++... .+. .+|... +.-.|..|+++ -+++|.++++++|. .+++||++
T Consensus 210 E~sv~~~~~~~~~G~~~~~~~~~~~~~~--~~~~~~------~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~ 281 (433)
T 2dwc_A 210 EVTELAVRHFDENGEIVTTFPKPVGHYQ--IDGDYH------ASWQPAEISEKAEREVYRIAKRITDVLGGLGIFGVEMF 281 (433)
T ss_dssp EEEECCEEEECTTSCEEEEEECCEEEEE--SSSSEE------EEEESCCCCHHHHHHHHHHHHHHHHHHCSSEECEEEEE
T ss_pred eEEEEEEecccCCCCEeEEEecccceEE--EcCEEE------EEEcCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEE
Confidence 99988773 44322211 111 133332 12236668864 47899999999998 79999999
Q ss_pred eeCCCcEEEeccC
Q 001944 235 RCEGRSYVCDVNG 247 (993)
Q Consensus 235 Rs~g~syV~DVNG 247 (993)
.+.+++||+|||.
T Consensus 282 ~~~~~~~viEiN~ 294 (433)
T 2dwc_A 282 VKGDKVWANEVSP 294 (433)
T ss_dssp EETTEEEEEEEES
T ss_pred EeCCcEEEEEEeC
Confidence 9988999999995
No 25
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.31 E-value=2.5e-12 Score=139.75 Aligned_cols=196 Identities=18% Similarity=0.235 Sum_probs=128.4
Q ss_pred CcCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHH-HhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 15 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL-~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
.||++|..+ ++++..+.+.++..+.++.|+.....+++||..+.++| +++|||+|++..+... ++
T Consensus 74 ~~d~v~~~~--e~~~~~~~~~l~~~gi~~~~~~~~~~~~~dK~~~~~~l~~~~gip~p~~~~~~~~------------~~ 139 (391)
T 1kjq_A 74 KPHYIVPEI--EAIATDMLIQLEEEGLNVVPCARATKLTMNREGIRRLAAEELQLPTSTYRFADSE------------SL 139 (391)
T ss_dssp CCSEEEECS--SCSCHHHHHHHHHTTCEESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEEEESSH------------HH
T ss_pred CCCEEEECC--CcCCHHHHHHHHhCCCCcCCCHHHHHHhhCHHHHHHHHHHhCCCCCCCeeeeCCH------------HH
Confidence 588888866 45555667777777767889999999999999999999 8999999999988551 11
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-----cCcceEEeeccCCCCc
Q 001944 94 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-----REGSYIYEEFMPTGGT 168 (993)
Q Consensus 94 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-----~~gsyIyEEFi~t~G~ 168 (993)
.... -..+++|+|+||..|. .|-|+. .+.+.. ++..-+.... .++.+|+||||+. |.
T Consensus 140 ~~~~-~~~~g~P~vvKp~~g~-----------gg~Gv~----~v~~~~-el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~ 201 (391)
T 1kjq_A 140 FREA-VADIGYPCIVKPVMSS-----------SGKGQT----FIRSAE-QLAQAWKYAQQGGRAGAGRVIVEGVVKF-DF 201 (391)
T ss_dssp HHHH-HHHHCSSEEEEESCC--------------CCCE----EECSGG-GHHHHHHHHHHHSGGGCCCEEEEECCCC-SE
T ss_pred HHHH-HHhcCCCEEEEeCCCC-----------CCCCeE----EECCHH-HHHHHHHHHHhhcccCCCCEEEEEecCC-Ce
Confidence 1111 1134689999999875 233332 122211 1110000111 2568999999986 88
Q ss_pred eeEEEEECCce-eEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEeeCCCcEE
Q 001944 169 DVKVYTVGPEY-AHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYV 242 (993)
Q Consensus 169 DIKVytVG~~~-vhAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs~g~syV 242 (993)
++.|.+++..- ++ -.|.. +.++.+-...+.-.|..|++ +-+++|.++++++|. .+++||++.+.+++||
T Consensus 202 E~sv~~~~~~~g~~----~~~~~-~~~~~~~~~~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~~~~v 276 (391)
T 1kjq_A 202 EITLLTVSAVDGVH----FCAPV-GHRQEDGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCGDEVIF 276 (391)
T ss_dssp EEEEEEEEETTEEE----ECCCE-EEEEETTEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEETTEEEE
T ss_pred EEEEEEEEeCCCeE----EccCc-ceEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCcEEE
Confidence 99998875311 11 11211 12222111112223666876 356789999999998 7999999999889999
Q ss_pred EeccC
Q 001944 243 CDVNG 247 (993)
Q Consensus 243 ~DVNG 247 (993)
+|||.
T Consensus 277 iEiN~ 281 (391)
T 1kjq_A 277 SEVSP 281 (391)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99995
No 26
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.30 E-value=1.9e-11 Score=135.14 Aligned_cols=228 Identities=13% Similarity=0.150 Sum_probs=139.1
Q ss_pred CcCEEeecccCCCChH-HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 001944 15 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 92 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~-KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 92 (993)
.+|+.+.-.--.+.-+ ....++++.+ ||+-++..+-.++.||..+.++|+++|||+|++..+.+... ..
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~~~~~~~---------~~ 168 (372)
T 3tqt_A 98 SADCVFPMVHGTQGEDGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDA---------TE 168 (372)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCCBCCCEEECTTSC---------CT
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEEEechhh---------hh
Confidence 4787776554334343 4667777777 56778899999999999999999999999999999976210 01
Q ss_pred ceeeecCeeccCc-EEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCcee
Q 001944 93 DFVEVHGNRFWKP-FVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDV 170 (993)
Q Consensus 93 d~i~v~g~~~~kP-fVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DI 170 (993)
..+.-.-..++.| +|+||..|. .|-|+ .++.|...... -+. ..+.+..+|+||||+ |+++
T Consensus 169 ~~~~~~~~~lg~P~vvVKP~~gg-----------ss~Gv----~~v~~~~eL~~-a~~~a~~~~~~vlVEe~I~--G~E~ 230 (372)
T 3tqt_A 169 GVYQRLLDRWGTSELFVKAVSLG-----------SSVAT----LPVKTETEFTK-AVKEVFRYDDRLMVEPRIR--GREI 230 (372)
T ss_dssp THHHHHHHHC---CEEEEESSCC-----------SGGGE----EEECSHHHHHH-HHHHHTTTCSCEEEEECCC--SEEE
T ss_pred hHHHHHHHhcCCCeEEEEECCCC-----------CCCCE----EEECCHHHHHH-HHHHHHhcCCCEEEECCCC--CEEE
Confidence 1111111245689 999999875 22233 22333222111 010 123467899999998 8999
Q ss_pred EEEEECCceeEE--EeeeCCCCCC--eeeecCC-CC--ceeeeeeCCH----HHHHHHHHHHHHhCCc-eeEEEEEeeC-
Q 001944 171 KVYTVGPEYAHA--EARKSPVVDG--VVMRNPD-GK--EVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE- 237 (993)
Q Consensus 171 KVytVG~~~vhA--e~RKSP~vDG--~vrrN~~-gk--e~r~~v~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs~- 237 (993)
.|-++|+....+ ..+.-| .++ .+++.-+ |+ ....|..|++ +-+++|.++++++|.. +|+||++...
T Consensus 231 ~v~vl~~~~~~~~~~~ei~~-~~~~~d~~~ky~~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~d 309 (372)
T 3tqt_A 231 ECAVLGNGAPKASLPGEIIP-HHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTPN 309 (372)
T ss_dssp EEEEEESSSCEECCCEEEEC-C---------------CEEESCCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTT
T ss_pred EEEEEeCCCceEeeeEEEec-CCCccchhhcccCCCceEEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEeCC
Confidence 999999873221 111111 022 1333323 22 2334566776 4568999999999997 9999999884
Q ss_pred CCcEEEecc---Cc---ccc-----ccccccHHHHHHHHHHHHH
Q 001944 238 GRSYVCDVN---GW---SFV-----KNSYKYYDDAACVLRKMFL 270 (993)
Q Consensus 238 g~syV~DVN---Gw---SFV-----K~n~kYYddcA~iL~~~~l 270 (993)
|.+||+||| |+ |.+ ..-..|-+-|.+||..-+-
T Consensus 310 g~~~vlEINt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a~~ 353 (372)
T 3tqt_A 310 NKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELAID 353 (372)
T ss_dssp CCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEEECCCCcCccCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 669999999 53 322 1223555666666665543
No 27
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.29 E-value=7.8e-12 Score=132.71 Aligned_cols=191 Identities=16% Similarity=0.184 Sum_probs=119.0
Q ss_pred CcCEEeecccCCCCh-HHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 001944 15 ICDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 92 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL-~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 92 (993)
.+|++|+.+-...++ .+..+.++..+ |++.|+.....+++||..+.++|+++|||+|++..... + ..
T Consensus 72 ~~d~vi~~~~~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~-----~------~~ 140 (331)
T 2pn1_A 72 GVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYATMA-----S------FE 140 (331)
T ss_dssp TCCEEEESSHHHHHHHHHTHHHHHTTTCEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEESSHH-----H------HH
T ss_pred CCCEEEeCCchhHHHHHHHHHHHHhCCcEEecCCHHHHHHhhCHHHHHHHHHHcCCCCCcEEecHH-----H------hh
Confidence 378888753222322 23344555444 57789999999999999999999999999999865211 0 11
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 001944 93 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 172 (993)
Q Consensus 93 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKV 172 (993)
+.+ ....++.|+|+||..|. .|.|+. +.+ +.. ++.. .++....+|+||||+ |+.+.|
T Consensus 141 ~~~--~~~~~~~P~vvKp~~g~-----------g~~gv~-~v~---~~~-el~~---~~~~~~~~lvee~i~--G~e~~v 197 (331)
T 2pn1_A 141 EAL--AAGEVQLPVFVKPRNGS-----------ASIEVR-RVE---TVE-EVEQ---LFSKNTDLIVQELLV--GQELGV 197 (331)
T ss_dssp HHH--HTTSSCSCEEEEESBC------------------------------------------CEEEEECCC--SEEEEE
T ss_pred hhh--hcccCCCCEEEEeCCCC-----------CCCCeE-EeC---CHH-HHHH---HHHhCCCeEEEecCC--CcEEEE
Confidence 111 11235689999999987 344553 333 222 1111 233456899999998 577777
Q ss_pred EEEC----CceeEEEeeeCCCCCCeeeecCCCCcee-eeeeCCHHHHHHHHHHHHHhCC-ceeEEEEEeeCCCcEEEecc
Q 001944 173 YTVG----PEYAHAEARKSPVVDGVVMRNPDGKEVR-YPVLLTPNEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVN 246 (993)
Q Consensus 173 ytVG----~~~vhAe~RKSP~vDG~vrrN~~gke~r-~~v~Lt~eEk~iA~ka~~afgq-~VcGfDLLRs~g~syV~DVN 246 (993)
.+++ ++++++..|.. +.. .+|... .+..+.++-+++|.++++++|. .+++||++..+|++||+|||
T Consensus 198 ~~~~d~~~G~~~~~~~~~~------~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~lg~~G~~~vd~~~~~g~~~~iEiN 269 (331)
T 2pn1_A 198 DAYVDLISGKVTSIFIKEK------LTM--RAGETDKSRSVLRDDVFELVEHVLDGSGLVGPLDFDLFDVAGTLYLSEIN 269 (331)
T ss_dssp EEEECTTTCCEEEEEEEEE------EEE--ETTEEEEEEEECCHHHHHHHHHHHTTTCCCEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEecCCCeEEEEEEEEE------EEe--cCCceeEeEEeccHHHHHHHHHHHHHhCCcceEEEEEEEcCCCEEEEEEe
Confidence 7665 56665554432 110 122222 2335789999999999999999 69999999778889999999
Q ss_pred C
Q 001944 247 G 247 (993)
Q Consensus 247 G 247 (993)
.
T Consensus 270 ~ 270 (331)
T 2pn1_A 270 P 270 (331)
T ss_dssp S
T ss_pred C
Confidence 6
No 28
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.29 E-value=3.2e-12 Score=140.98 Aligned_cols=200 Identities=17% Similarity=0.173 Sum_probs=126.5
Q ss_pred CcCEEeecccCCCCh-HHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 001944 15 ICDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 92 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL-~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 92 (993)
.||++|... ..++ ..+.+.++..+ |+.-|+.+...+++||..+.++|+++|||+|++..+... +
T Consensus 61 ~~d~v~~~~--E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------------~ 126 (417)
T 2ip4_A 61 GIDLTLVGP--EAPLVEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRVFREP------------L 126 (417)
T ss_dssp TCCEEEECS--SHHHHTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEEEESSH------------H
T ss_pred CCCEEEECC--chHHHHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCeeeeCCH------------H
Confidence 378888753 2333 34555565555 555699999999999999999999999999999887541 1
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc---ccCcceEEeeccCCCCce
Q 001944 93 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV---RREGSYIYEEFMPTGGTD 169 (993)
Q Consensus 93 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~---r~~gsyIyEEFi~t~G~D 169 (993)
+..... ..++.|+|+||..|. .|.|+. + +.+.+ ++..-+... ..++.+|+||||+ |.+
T Consensus 127 ~~~~~~-~~~~~P~vvKp~~~~-----------gg~Gv~-~---v~~~~-el~~~~~~~~~~~~~~~~lvEe~i~--g~E 187 (417)
T 2ip4_A 127 EALAYL-EEVGVPVVVKDSGLA-----------AGKGVT-V---AFDLH-QAKQAVANILNRAEGGEVVVEEYLE--GEE 187 (417)
T ss_dssp HHHHHH-HHHCSSEEEECTTSC-----------SSTTCE-E---ESCHH-HHHHHHHHHTTSSSCCCEEEEECCC--SCE
T ss_pred HHHHHH-HHcCCCEEEEECCCC-----------CCCCEE-E---eCCHH-HHHHHHHHHHhhccCCeEEEEECcc--CcE
Confidence 211111 124679999999985 233332 1 21111 111000011 1136799999998 889
Q ss_pred eEEEEEC-CceeEEEe--ee-CCCCCCeeeecCCCCceeeeeeCCHHHH-----HHHHHHHHHh-----C-CceeEEEEE
Q 001944 170 VKVYTVG-PEYAHAEA--RK-SPVVDGVVMRNPDGKEVRYPVLLTPNEK-----QMAREVCIAF-----R-QAVCGFDLL 234 (993)
Q Consensus 170 IKVytVG-~~~vhAe~--RK-SP~vDG~vrrN~~gke~r~~v~Lt~eEk-----~iA~ka~~af-----g-q~VcGfDLL 234 (993)
+.|.+++ ++.+++.. |. -+..++...-|..+-+.-.|..|+++.. ++|.++++++ + ..+++||++
T Consensus 188 ~sv~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~ 267 (417)
T 2ip4_A 188 ATVLALTDGETILPLLPSQDHKRLLDGDQGPMTGGMGAVAPYPMDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLM 267 (417)
T ss_dssp EEEEEEESSSCEEECCCBEECCEEETTTEEEECSCSEEEESCCCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEE
T ss_pred EEEEEEEeCCEEEEcchheechhhccCCCCCcCCCCeeeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEE
Confidence 9998883 34445432 32 2223444444444444556777888643 3477778876 4 356779999
Q ss_pred eeCCCcEEEeccC
Q 001944 235 RCEGRSYVCDVNG 247 (993)
Q Consensus 235 Rs~g~syV~DVNG 247 (993)
.+.+++||+|||-
T Consensus 268 ~~~~g~~viEiN~ 280 (417)
T 2ip4_A 268 LTREGPKVLEFNA 280 (417)
T ss_dssp ECSSCEEEEEEES
T ss_pred EeCCCeEEEEEec
Confidence 9877799999995
No 29
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.28 E-value=4.1e-11 Score=131.24 Aligned_cols=227 Identities=15% Similarity=0.216 Sum_probs=142.1
Q ss_pred CcCEEeecccCCCChH--HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 001944 15 ICDCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 91 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~--KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~ 91 (993)
.+|+.+.-.- |++-+ ....++++.+ ||+-++..+..++.||..+.++|+++|||+|++..+.+... . .
T Consensus 98 ~~D~vf~~lh-G~~gEdg~iq~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~~------~--~ 168 (364)
T 3i12_A 98 TVDVIFPIVH-GTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNR------H--A 168 (364)
T ss_dssp CCSEEEECCC-STTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEEETTTG------G--G
T ss_pred CCCEEEEeCC-CCCCcCHHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEEcccc------c--h
Confidence 4677665432 32222 4556777766 56667889999999999999999999999999999977210 0 0
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCcee
Q 001944 92 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDV 170 (993)
Q Consensus 92 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DI 170 (993)
.+...+ -..+++|+|+||..|. .|.|+. ++.+...... -+. ..+.+..+|+||||+ |+++
T Consensus 169 ~~~~~~-~~~lg~PvvVKP~~gg-----------ss~Gv~----~v~~~~el~~-a~~~a~~~~~~vlVEe~I~--G~E~ 229 (364)
T 3i12_A 169 FSFAEV-ESRLGLPLFVKPANQG-----------SSVGVS----KVANEAQYQQ-AVALAFEFDHKVVVEQGIK--GREI 229 (364)
T ss_dssp CCHHHH-HHHHCSSEEEEETTCC-----------TTTTCE----EESSHHHHHH-HHHHHHHHCSEEEEEECCC--SEEE
T ss_pred hhHHHH-HHhcCCCEEEEECCCC-----------CCcCeE----EeCCHHHHHH-HHHHHHhcCCcEEEEcCcC--CeEE
Confidence 011111 1245689999999885 333432 2332221111 010 113467899999997 7999
Q ss_pred EEEEECCce---eEEEeeeCCCCCCeeeec--C-CC--CceeeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEEEee-
Q 001944 171 KVYTVGPEY---AHAEARKSPVVDGVVMRN--P-DG--KEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRC- 236 (993)
Q Consensus 171 KVytVG~~~---vhAe~RKSP~vDG~vrrN--~-~g--ke~r~~v~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs- 236 (993)
.|.++|+.. ....... |. ++.+... - .| .....|..|++ +-+++|.++++++|. .+++||++..
T Consensus 230 ~v~vl~~~~~~~~~~~ei~-~~-~~~~~~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 307 (364)
T 3i12_A 230 ECAVLGNDNPQASTCGEIV-LN-SEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTA 307 (364)
T ss_dssp EEEEEESSSCEEEEEEEEE-CC-TTCC--TTTTSGGGGCEEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred EEEEEeCCCceEeeeEEEe-cC-CCccCHHHcccCCCceEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEec
Confidence 999998763 2222222 21 3322221 1 22 23334666776 456789999999999 5999999988
Q ss_pred CCCcEEEeccCc------ccc-----ccccccHHHHHHHHHHHHHH
Q 001944 237 EGRSYVCDVNGW------SFV-----KNSYKYYDDAACVLRKMFLE 271 (993)
Q Consensus 237 ~g~syV~DVNGw------SFV-----K~n~kYYddcA~iL~~~~l~ 271 (993)
+|.+||+|||.. |.+ -....|-+-|.+||..-+-+
T Consensus 308 ~g~~~vlEiN~~Pg~t~~s~~p~~~~a~G~~~~~l~~~li~~a~~~ 353 (364)
T 3i12_A 308 DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELALER 353 (364)
T ss_dssp TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCCCCCCCCHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 566999999932 322 23446777777777665544
No 30
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.27 E-value=4e-11 Score=131.55 Aligned_cols=191 Identities=17% Similarity=0.249 Sum_probs=127.6
Q ss_pred cCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 001944 16 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 95 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 95 (993)
||++ .+-....|. .++++++.... +.|+.+...++.||....++|+++|||+|++..+... ++..
T Consensus 76 ~dvI-~~~~e~~~~-~~~~~l~~~g~-~~~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~------------~~~~ 140 (389)
T 3q2o_A 76 SDVV-TYEFENIDY-RCLQWLEKHAY-LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRLVQNQ------------EQLT 140 (389)
T ss_dssp CSEE-EESCCCCCH-HHHHHHHHHSC-CTTCSHHHHHTTSHHHHHHHHHHTTCCCCCEEEESSH------------HHHH
T ss_pred CCEe-eeccccccH-HHHHHHHhhCc-cCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCH------------HHHH
Confidence 7876 444455776 45566666655 7799999999999999999999999999999988651 1222
Q ss_pred eecCeeccCcEEEeecccc-C-cceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 001944 96 EVHGNRFWKPFVEKPVHGD-D-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 173 (993)
Q Consensus 96 ~v~g~~~~kPfVeKpv~Ge-d-Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVy 173 (993)
.. -..+++|+|+||..|. + .++++...... ....++.. .++.+|+||||+ ++.++.|.
T Consensus 141 ~~-~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~e---l~~~~~~~---------------~~~~~lvEe~i~-g~~E~~v~ 200 (389)
T 3q2o_A 141 EA-IAELSYPSVLKTTTGGYDGKGQVVLRSEAD---VDEARKLA---------------NAAECILEKWVP-FEKEVSVI 200 (389)
T ss_dssp HH-HHHHCSSEEEEESSCCSSSCCEEEESSGGG---HHHHHHHH---------------HHSCEEEEECCC-CSEEEEEE
T ss_pred HH-HHhcCCCEEEEeCCCCCCCCCeEEECCHHH---HHHHHHhc---------------CCCCEEEEeccc-CceEEEEE
Confidence 11 1235689999999983 2 45554443221 22222211 256799999998 35999999
Q ss_pred EECC---ceeE-EEeeeCCCCCCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhCCc-eeEEEEEeeC-CCcEEE
Q 001944 174 TVGP---EYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCE-GRSYVC 243 (993)
Q Consensus 174 tVG~---~~vh-Ae~RKSP~vDG~vrrN~~gke~r~~v~Lt~e----Ek~iA~ka~~afgq~-VcGfDLLRs~-g~syV~ 243 (993)
++++ +++. ...+.-+ .+|.+ .+...|..|+++ -+++|.++++++|.. +++||++.+. |.+||+
T Consensus 201 ~~~~~~G~~~~~~~~e~~~-~~g~~------~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~dg~~~vi 273 (389)
T 3q2o_A 201 VIRSVSGETKVFPVAENIH-VNNIL------HESIVPARITEELSQKAIAYAKVLADELELVGTLAVEMFATADGEIYIN 273 (389)
T ss_dssp EEECTTCCEEECCCEEEEE-ETTEE------EEEEESCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEE
T ss_pred EEEcCCCCEEEecCeeeEE-cCCce------EEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCCEEEE
Confidence 9864 2211 1111100 02332 123345567764 467899999999996 9999999984 569999
Q ss_pred eccCc
Q 001944 244 DVNGW 248 (993)
Q Consensus 244 DVNGw 248 (993)
|||--
T Consensus 274 EiNpR 278 (389)
T 3q2o_A 274 ELAPR 278 (389)
T ss_dssp EEESS
T ss_pred EeeCC
Confidence 99965
No 31
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.26 E-value=7.4e-12 Score=136.84 Aligned_cols=197 Identities=12% Similarity=0.136 Sum_probs=126.6
Q ss_pred CcCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 001944 15 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 94 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 94 (993)
.+|.+|+. ..-.++.-+.+.++..+. ..|+.+...+++||..+.++|+++|||+|++..+... ++.
T Consensus 71 ~~d~v~~~-~~~~~~~~~a~~~~~~gl-~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------------~~~ 136 (403)
T 4dim_A 71 NLDGAATC-CLDTGIVSLARICDKENL-VGLNEEAAIMCGDKYKMKEAFKKYNVNTARHFVVRNE------------NEL 136 (403)
T ss_dssp CCSEEECC-SCSTTHHHHHHHHHHHTC-SSCCHHHHHHHHCHHHHHHHHHHHTCCCCCEECCCSH------------HHH
T ss_pred CCCEEEeC-CcchhHHHHHHHHHHcCc-CCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEeCCH------------HHH
Confidence 37888875 333455545455555554 5799999999999999999999999999999877541 122
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc---ccCcceEEeeccCCCCceeE
Q 001944 95 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV---RREGSYIYEEFMPTGGTDVK 171 (993)
Q Consensus 95 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~---r~~gsyIyEEFi~t~G~DIK 171 (993)
... -..+++|+|+||..|. .|-|+ +.+.+....-. -.... ..++.+|+||||+-.--+|.
T Consensus 137 ~~~-~~~~g~P~vvKp~~g~-----------gg~Gv----~~v~~~~el~~-~~~~~~~~~~~~~~lvEe~i~g~e~sv~ 199 (403)
T 4dim_A 137 KNA-LENLKLPVIVKATDLQ-----------GSKGI----YIAKKEEEAID-GFNETMNLTKRDYCIVEEFIEGYEFGAQ 199 (403)
T ss_dssp HHH-HHTSCSSEEEECSCC----------------C----EEESSHHHHHH-HHHHHHHHCSSSCCEEEECCCSEEEEEE
T ss_pred HHH-HhcCCCCEEEEECCCC-----------CCCCE----EEECCHHHHHH-HHHHHHhcCcCCcEEEEEccCCcEEEEE
Confidence 111 1235689999999986 22232 22322211110 00011 13577999999996445677
Q ss_pred EEEECCceeEEEeeeCCCCCCeeeecCC-CC--ceeeeeeCCHHH----HHHHHHHHHHhCCc--eeEEEEEeeCCCcEE
Q 001944 172 VYTVGPEYAHAEARKSPVVDGVVMRNPD-GK--EVRYPVLLTPNE----KQMAREVCIAFRQA--VCGFDLLRCEGRSYV 242 (993)
Q Consensus 172 VytVG~~~vhAe~RKSP~vDG~vrrN~~-gk--e~r~~v~Lt~eE----k~iA~ka~~afgq~--VcGfDLLRs~g~syV 242 (993)
+++.++++...... +++..+.+ +. +...|..|+++. .++|.++++++|.. +++||++...|++||
T Consensus 200 ~~~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~~~~~~~ 273 (403)
T 4dim_A 200 AFVYKNDVLFVMPH------GDETYMSHTAVPVGHYVPLDVKDDIIEKTKTEVKKAIKALGLNNCAVNVDMILKDNEVYI 273 (403)
T ss_dssp EEEETTEEEEEEEE------EEEEEESSSEEEEEEEESCCSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEETTEEEE
T ss_pred EEEECCEEEEEEEe------cceeccCCCCcceeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEEECCcEEE
Confidence 77777776543311 11111111 11 233466788765 67999999999986 789999999889999
Q ss_pred EeccCc
Q 001944 243 CDVNGW 248 (993)
Q Consensus 243 ~DVNGw 248 (993)
+|||.-
T Consensus 274 iEiN~R 279 (403)
T 4dim_A 274 IELTGR 279 (403)
T ss_dssp EEEESS
T ss_pred EEEcCC
Confidence 999953
No 32
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.25 E-value=1.2e-11 Score=135.07 Aligned_cols=190 Identities=17% Similarity=0.181 Sum_probs=123.6
Q ss_pred HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 001944 31 KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 109 (993)
Q Consensus 31 KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 109 (993)
.....+++.+ ||+=.+..+..++.||..+.++|+++|||+|+++.+.+.. ....+.---..+++|+|+|
T Consensus 114 ~~q~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~----------~~~~~~~~~~~lg~PvvVK 183 (357)
T 4fu0_A 114 TLQGIFELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFN----------EEAAMKEIEANLTYPLFIK 183 (357)
T ss_dssp HHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCBCCCEEEEEGGG----------HHHHHHHHHHHCCSSEEEE
T ss_pred HHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHCCCCCCCEEeecCCC----------hHHHHHHHHHhcCCCEEEE
Confidence 4556777777 6777999999999999999999999999999999987621 1111111112467899999
Q ss_pred eccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEE-----E
Q 001944 110 PVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHA-----E 183 (993)
Q Consensus 110 pv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhA-----e 183 (993)
|..|. .|.|+. ++.|....-. -+. ....+..++.|+||+ |+.+-|.++|.....+ .
T Consensus 184 P~~gg-----------~s~Gv~----~v~~~~el~~-~~~~a~~~~~~vlvE~~i~--G~e~~v~vl~~~~~~~~~v~~~ 245 (357)
T 4fu0_A 184 PVRAG-----------SSFGIT----KVIEKQELDA-AIELAFEHDTEVIVEETIN--GFEVGCAVLGIDELIVGRVDEI 245 (357)
T ss_dssp ETTCS-----------SSTTCE----EESSHHHHHH-HHHHHTTTCSEEEEEECCC--SEEEEEEEEESSSEEECCCEEE
T ss_pred ECCCC-----------CCCceE----EeccHHhHHH-HHHHHhccCCeEEEEEecC--CEEEEEEEEecCCceEEEEEEE
Confidence 99985 344442 2333222111 111 234567899999994 8999998888764322 1
Q ss_pred eeeCCCCCCeeeecCCCCceeeeeeCCHHH----HHHHHHHHHHhCC-ceeEEEEEee-CCCcEEEeccCc
Q 001944 184 ARKSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVNGW 248 (993)
Q Consensus 184 ~RKSP~vDG~vrrN~~gke~r~~v~Lt~eE----k~iA~ka~~afgq-~VcGfDLLRs-~g~syV~DVNGw 248 (993)
.+.....|-.-..+...-+...|..|+++. +++|.++++++|. .+|+||++.+ +|.+||+|||--
T Consensus 246 ~~~~~~~d~~~k~~~~~~~~~~pa~l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~~~~dg~~~vlEvNt~ 316 (357)
T 4fu0_A 246 ELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTPSGEIVFNEVNTI 316 (357)
T ss_dssp EECHHHHTSCSBCSSCCEEEESSCSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESS
T ss_pred EcccccccccccccCCCceEecCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEeCCCCEEEEEEeCC
Confidence 111110110000111122334466787754 5789999999998 5999999887 566999999943
No 33
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.25 E-value=5.1e-11 Score=132.15 Aligned_cols=228 Identities=16% Similarity=0.231 Sum_probs=142.2
Q ss_pred CcCEEeecccCCCChH--HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 001944 15 ICDCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 91 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~--KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~ 91 (993)
.+|+.+.-. .|++-+ .....+++.+ ||+-|+..+..++.||..+.++|+++|||+|++..+.+... . .
T Consensus 117 ~~D~vf~~l-hG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~~~~~~~--~------~ 187 (386)
T 3e5n_A 117 QIDVVFPIV-HGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTA--A------H 187 (386)
T ss_dssp CCSEEEEEE-CSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHBHHHHHHHHHHTTCCBCCEEEEEHHHH--T------T
T ss_pred CCCEEEEcC-CCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCccc--c------h
Confidence 356555432 122222 3556676666 67778999999999999999999999999999999976210 0 0
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCcee
Q 001944 92 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDV 170 (993)
Q Consensus 92 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DI 170 (993)
.+...+ -..+++|+|+||..|. .|-|+. ++.|...... -+. ..+.+..+|+||||+ |+++
T Consensus 188 ~~~~~~-~~~lg~PvvVKP~~gg-----------ss~Gv~----~v~~~~el~~-a~~~a~~~~~~vlVEe~I~--G~E~ 248 (386)
T 3e5n_A 188 ADVDTL-IAQLGLPLFVKPANQG-----------SSVGVS----QVRTADAFAA-ALALALAYDHKVLVEAAVA--GREI 248 (386)
T ss_dssp CCHHHH-HHHHCSSEEEEESBSC-----------SSTTCE----EECSGGGHHH-HHHHHTTTCSEEEEEECCC--SEEE
T ss_pred hhHHHH-HHhcCCCEEEEECCCC-----------cCCCEE----EECCHHHHHH-HHHHHHhCCCcEEEEcCCC--CeEE
Confidence 011111 1235689999999985 333432 2433322111 111 123467899999998 7999
Q ss_pred EEEEECCceeEEE---eeeCCCCCCe--eeecC-CC--CceeeeeeCCHH----HHHHHHHHHHHhCCc-eeEEEEEeeC
Q 001944 171 KVYTVGPEYAHAE---ARKSPVVDGV--VMRNP-DG--KEVRYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCE 237 (993)
Q Consensus 171 KVytVG~~~vhAe---~RKSP~vDG~--vrrN~-~g--ke~r~~v~Lt~e----Ek~iA~ka~~afgq~-VcGfDLLRs~ 237 (993)
.|-++|+....+. .+..+ .+. +...- ++ .....|..|+++ -+++|.++++++|.. +++||++...
T Consensus 249 ~v~vl~~~~~~~~~~gei~~~--~~~~d~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~ 326 (386)
T 3e5n_A 249 ECAVLGNAVPHASVCGEVVVH--DAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCA 326 (386)
T ss_dssp EEEEECSSSCEEEEEEEECC-------------------CEESSCSSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECT
T ss_pred EEEEEeCCCceEEEeEEEEeC--CcccchhcccCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEEC
Confidence 9999988753332 33321 231 22222 22 333446677764 468999999999997 9999999884
Q ss_pred -CCcEEEecc---Cc---ccc-----ccccccHHHHHHHHHHHHHHh
Q 001944 238 -GRSYVCDVN---GW---SFV-----KNSYKYYDDAACVLRKMFLEA 272 (993)
Q Consensus 238 -g~syV~DVN---Gw---SFV-----K~n~kYYddcA~iL~~~~l~~ 272 (993)
|.+||+||| |+ |.+ .....|-+-|.+||..-+-+.
T Consensus 327 dg~~~vlEiN~~PG~t~~S~~p~~~~~~Gi~~~~li~~li~~a~~r~ 373 (386)
T 3e5n_A 327 DGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELALERH 373 (386)
T ss_dssp TCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeECCCCCCccCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 569999999 43 222 223466666777776665443
No 34
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.24 E-value=1.3e-11 Score=137.16 Aligned_cols=228 Identities=13% Similarity=0.176 Sum_probs=137.7
Q ss_pred CcCEEeecccCCCChH-HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCC-CCCCCEEEEeccCCCccccccccc
Q 001944 15 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYG-IPVPRYALVNREVPYQELDYFIEE 91 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~-KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~g-IP~P~t~~~~r~~p~~~~~~~~e~ 91 (993)
.+|+.+.-.--.|--+ ....++++.+ ||+-|+..+..++.||..+.++|+++| ||+|++.++.+... . .
T Consensus 119 ~~D~vf~~lhG~~GEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~G~Ipvp~~~~~~~~~~------~--~ 190 (383)
T 3k3p_A 119 EEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVAYVALIEGEP------L--E 190 (383)
T ss_dssp TTCEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCBCCEEEEETTSC------H--H
T ss_pred CCCEEEEcCCCCCcchHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHhCCCcCCCCEEEEeCccc------h--h
Confidence 3576665443333332 4556777766 567789999999999999999999999 99999999977210 0 0
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCcee
Q 001944 92 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDV 170 (993)
Q Consensus 92 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DI 170 (993)
++... --..++.|+|+||..|. .|-|+ .++.|...... -+. ..+.+..+|+||||+ |+++
T Consensus 191 ~~~~~-~~~~lg~PvvVKP~~gg-----------ss~GV----~~v~~~~el~~-al~~a~~~~~~vlVEe~I~--G~E~ 251 (383)
T 3k3p_A 191 SKLAE-VEEKLIYPVFVKPANMG-----------SSVGI----SKAENRTDLKQ-AIALALKYDSRVLIEQGVD--AREI 251 (383)
T ss_dssp HHHHH-HHHHCCSSEEEEECC-----------------C----EEESSHHHHHH-HHHHHHHHCSEEEEEECCC--SEEE
T ss_pred HHHHH-HHHhcCCCEEEEeCCCC-----------CCCCE----EEECCHHHHHH-HHHHHHhCCCeEEEEcCCC--CeEE
Confidence 11111 11245689999999885 22232 22333222111 011 123467899999998 9999
Q ss_pred EEEEECCceeEE---EeeeCCCCCCe--eeecCCCC--ceeeeeeCCHHH----HHHHHHHHHHhCCc-eeEEEEEee-C
Q 001944 171 KVYTVGPEYAHA---EARKSPVVDGV--VMRNPDGK--EVRYPVLLTPNE----KQMAREVCIAFRQA-VCGFDLLRC-E 237 (993)
Q Consensus 171 KVytVG~~~vhA---e~RKSP~vDG~--vrrN~~gk--e~r~~v~Lt~eE----k~iA~ka~~afgq~-VcGfDLLRs-~ 237 (993)
.|-++|+....+ ..+..+ .+. +.+.-..+ ....|..|+++. +++|.++++++|.. +++||++.+ +
T Consensus 252 ~v~vl~d~~~~~~~~~ei~~~--~~~~d~~~ky~~g~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~~ 329 (383)
T 3k3p_A 252 EVGILGNTDVKTTLPGEIVKD--VAFYDYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTED 329 (383)
T ss_dssp EEEEEESSSCEECCCEEEC-------------------CEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTT
T ss_pred EEEEEeCCCeeEEeeEEEecC--CCccchhhcccCCCeeEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEECC
Confidence 999998754322 222221 121 22322222 233355677654 68999999999997 999999987 5
Q ss_pred CCcEEEeccCc------ccc-----ccccccHHHHHHHHHHHHHH
Q 001944 238 GRSYVCDVNGW------SFV-----KNSYKYYDDAACVLRKMFLE 271 (993)
Q Consensus 238 g~syV~DVNGw------SFV-----K~n~kYYddcA~iL~~~~l~ 271 (993)
|.+||+|||-- |.+ -....|-+-|.+||..-+-+
T Consensus 330 g~~~vlEINtrPG~t~~S~~p~~~~a~Gi~~~~li~~li~~a~~r 374 (383)
T 3k3p_A 330 GKVYLNELNTMPGFTQWSMYPLLWENMGLSYSVLIEELVSLAKEM 374 (383)
T ss_dssp CCEEEEEEESSCCCC--CHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 66999999943 222 12345666677776655443
No 35
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.24 E-value=4.5e-11 Score=131.95 Aligned_cols=205 Identities=16% Similarity=0.198 Sum_probs=130.9
Q ss_pred CcCEEeecccCCCChH-HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 001944 15 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 92 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~-KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 92 (993)
.+|+.+.-.--.+--+ ....++++.+ ||+-++..+..++.||..+.++|+++|||+|++.++.+.. ..
T Consensus 109 ~~D~vfp~lhG~~gEdg~iq~lle~~gip~vG~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~~~~~~----------~~ 178 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPR----------ST 178 (373)
T ss_dssp TCSEEEECCEETTEECCHHHHHHHHHTCCBSSSCHHHHHHHHBHHHHHHHHHHTTCCBCCEEEECTTC----------CC
T ss_pred CccEEEECCCCCCCccHHHHHHHHHcCCCccCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEEECcc----------cc
Confidence 3677766552222222 4556677666 5566678999999999999999999999999999997621 00
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 001944 93 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 171 (993)
Q Consensus 93 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DIK 171 (993)
.... .-..++.|+|+||..|. .|-|+. ++.|....-. -+. ..+.+..+|+||||+ |+++.
T Consensus 179 ~~~~-~~~~lg~PvvVKP~~gg-----------ss~GV~----~v~~~~eL~~-a~~~a~~~~~~vlVEe~I~--G~E~~ 239 (373)
T 3lwb_A 179 LHRQ-ECERLGLPVFVKPARGG-----------SSIGVS----RVSSWDQLPA-AVARARRHDPKVIVEAAIS--GRELE 239 (373)
T ss_dssp CCHH-HHHHHCSCEEEEESBCS-----------TTTTCE----EECSGGGHHH-HHHHHHTTCSSEEEEECCE--EEEEE
T ss_pred hhHH-HHHhcCCCEEEEeCCCC-----------CCCCEE----EeCCHHHHHH-HHHHHHhcCCCEEEeCCCC--CeEEE
Confidence 0001 12346789999999985 233432 3433322111 111 123467899999998 89999
Q ss_pred EEEECCcee-----EEEeeeCCCCCC----e--eeecCCCC--ceeeeeeCCH----HHHHHHHHHHHHhCC-ceeEEEE
Q 001944 172 VYTVGPEYA-----HAEARKSPVVDG----V--VMRNPDGK--EVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDL 233 (993)
Q Consensus 172 VytVG~~~v-----hAe~RKSP~vDG----~--vrrN~~gk--e~r~~v~Lt~----eEk~iA~ka~~afgq-~VcGfDL 233 (993)
|-++|..-. ....+...-..+ . +..+.+.+ +...|..|++ +-+++|.++++++|. .+++||+
T Consensus 240 v~vl~~~~~~~~~~~~~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf 319 (373)
T 3lwb_A 240 CGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLARVDF 319 (373)
T ss_dssp EEEEECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred EEEEECCCCceEEeeeeEEEccCCCCccccccchhhcccCCCceEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEE
Confidence 999987532 122222210011 1 22222222 2334667774 567899999999999 5999999
Q ss_pred EeeCCCcEEEeccCc
Q 001944 234 LRCEGRSYVCDVNGW 248 (993)
Q Consensus 234 LRs~g~syV~DVNGw 248 (993)
..+.++.||+|||-.
T Consensus 320 ~~~~dg~~vlEIN~~ 334 (373)
T 3lwb_A 320 FLTDDGPVINEINTM 334 (373)
T ss_dssp EEETTEEEEEEEESS
T ss_pred EEECCCCEEEEecCC
Confidence 998544499999943
No 36
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.23 E-value=9.3e-12 Score=137.93 Aligned_cols=203 Identities=18% Similarity=0.183 Sum_probs=122.4
Q ss_pred CcCEEeecccCCCCh-HHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 15 ICDCLIAFYSSGYPL-EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL-~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
.||++|...-+ |+ ..+.+.+.. ++.|+.++..+++||..+.++|+++|||+|++..+... ++
T Consensus 70 ~~d~V~~~~E~--~~~a~~~~~l~~---~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~e 132 (412)
T 1vkz_A 70 EEDIVIPGSEE--FLVEGVSNWRSN---VFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEVAETP------------EE 132 (412)
T ss_dssp SSCEECCSSGG--GTCC-----CTT---BSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSH------------HH
T ss_pred CCCEEEECCcH--HHHHHHHHHhhh---hhCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEECCH------------HH
Confidence 47888884332 33 244444443 67799999999999999999999999999999887541 12
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 001944 94 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 172 (993)
Q Consensus 94 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKV 172 (993)
....- ..+++|+|+||..|. -.++++...... ....++.+-+.+..|. ..+.+|+||||+ |+.+.|
T Consensus 133 ~~~~~-~~~g~PvvvKp~~~~gg~Gv~~v~~~~e---l~~a~~~~~~~~~~~g-------~~~~vlvEe~i~--G~E~sv 199 (412)
T 1vkz_A 133 LREKI-KKFSPPYVIKADGLARGKGVLILDSKEE---TIEKGSKLIIGELIKG-------VKGPVVIDEFLA--GNELSA 199 (412)
T ss_dssp HHHHH-TTSCSSEEEEESSCCSSCCEEEESSHHH---HHHHHHHHHHTSSSTT-------CCSCEEEEECCC--SEEEEE
T ss_pred HHHHH-HhcCCCEEEEeCCCCCCCCEEEECCHHH---HHHHHHHHHhhccccC-------CCCeEEEEECCc--CcEEEE
Confidence 22211 125689999999985 122322221110 1111111100000111 124899999998 899998
Q ss_pred EEEC-CceeEEEe--e-eCCCCCCeeeecCCCCceeeeeeCCHHH----HHHHHHHHHHh-----CC-ceeEEEEEeeCC
Q 001944 173 YTVG-PEYAHAEA--R-KSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAF-----RQ-AVCGFDLLRCEG 238 (993)
Q Consensus 173 ytVG-~~~vhAe~--R-KSP~vDG~vrrN~~gke~r~~v~Lt~eE----k~iA~ka~~af-----gq-~VcGfDLLRs~g 238 (993)
.+++ ++.+.+.. + ..+..++...-|+.+-+.-.|..|+++. +++|.++++++ +. .++++|++.+.+
T Consensus 200 ~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~~ 279 (412)
T 1vkz_A 200 MAVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDG 279 (412)
T ss_dssp EEEEETTEEEECCCCEECCEEETTTEEEECSCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEETT
T ss_pred EEEECCCEEEEeeeeEeeeeccCCCCCCCCCCceEEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEECC
Confidence 8873 33333322 1 1111233333343333344577788754 67899999999 43 677899999876
Q ss_pred CcEEEeccC
Q 001944 239 RSYVCDVNG 247 (993)
Q Consensus 239 ~syV~DVNG 247 (993)
++||+|||-
T Consensus 280 g~~viEiN~ 288 (412)
T 1vkz_A 280 DPYILEYNV 288 (412)
T ss_dssp EEEEEEEES
T ss_pred CcEEEEEec
Confidence 699999995
No 37
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.20 E-value=8e-12 Score=139.81 Aligned_cols=206 Identities=16% Similarity=0.127 Sum_probs=122.8
Q ss_pred CcCEEeecccCCCCh-HHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 001944 15 ICDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 92 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL-~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 92 (993)
.||++|..+- .|+ ..+.+.++..+ |+.-++.....+++||..+.++|+++|||+|++..+... +
T Consensus 83 ~~d~vi~~~E--~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~ 148 (451)
T 2yrx_A 83 AIDLTIVGPE--APLASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAAFTSY------------E 148 (451)
T ss_dssp TCSEEEECSH--HHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEESCH------------H
T ss_pred CCCEEEECCc--hHHHHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCH------------H
Confidence 3788887432 232 34555666666 445589999999999999999999999999999888551 1
Q ss_pred ceeeecCeeccCcEEEeeccccC-cceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 001944 93 DFVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 171 (993)
Q Consensus 93 d~i~v~g~~~~kPfVeKpv~Ged-Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIK 171 (993)
+..... ..++.|+|+||..|.. .+|++. .+.. -....++.+-.. +.|. ..+..+|+||||+ |.++.
T Consensus 149 ~~~~~~-~~~~~PvVvKp~~~~gg~Gv~~v--~~~~-el~~~~~~~~~~-~~~g------~~~~~~lvEe~i~--G~E~s 215 (451)
T 2yrx_A 149 EAKAYI-EQKGAPIVIKADGLAAGKGVTVA--QTVE-EALAAAKAALVD-GQFG------TAGSQVVIEEYLE--GEEFS 215 (451)
T ss_dssp HHHHHH-HHHCSSEEEEECC----CCEEEE--SSHH-HHHHHHHHHHHH-SCCB------TTBCCEEEEECCC--SEEEE
T ss_pred HHHHHH-HhcCCcEEEEeCCCCCCCcEEEE--CCHH-HHHHHHHHHHhc-cccC------CCCCeEEEEECCc--CcEEE
Confidence 211111 1245799999999851 222222 1110 011111111000 0010 0246799999999 88888
Q ss_pred EEEE-CCceeEEE--eee-CCCCCCeeeecCCCCceeeeee-CCHHH-----HHHHHHHHHHh---CC---ceeEEEEEe
Q 001944 172 VYTV-GPEYAHAE--ARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNE-----KQMAREVCIAF---RQ---AVCGFDLLR 235 (993)
Q Consensus 172 VytV-G~~~vhAe--~RK-SP~vDG~vrrN~~gke~r~~v~-Lt~eE-----k~iA~ka~~af---gq---~VcGfDLLR 235 (993)
|.++ .++.+.+. .|. ..+.++..--|+.+.+.-.|.. |+++. +++|.++++++ |. .+++||++.
T Consensus 216 v~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~ 295 (451)
T 2yrx_A 216 FMAFVNGEKVYPLAIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMA 295 (451)
T ss_dssp EEEEEETTEEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEE
T ss_pred EEEEEcCCEEEEeeeEEeccccccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEE
Confidence 8776 33444443 221 2223443333443444445665 88764 33567777776 43 467789999
Q ss_pred eCCCcEEEeccC
Q 001944 236 CEGRSYVCDVNG 247 (993)
Q Consensus 236 s~g~syV~DVNG 247 (993)
+.+++||+|||-
T Consensus 296 ~~~g~~viEiN~ 307 (451)
T 2yrx_A 296 TANGPKVIEFNA 307 (451)
T ss_dssp ETTEEEEEEEES
T ss_pred eCCCcEEEEEec
Confidence 977799999994
No 38
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.19 E-value=1.3e-11 Score=136.29 Aligned_cols=206 Identities=17% Similarity=0.160 Sum_probs=124.6
Q ss_pred cCEEeecccCCCCh-HHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 16 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 16 cD~LIsF~S~GFPL-~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
+|++|.. +. .|+ ..+.+.++..+ |+.-|+.+...++.||..+.++|+++|||+|++..+... ++
T Consensus 63 ~d~v~~~-~E-~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~ 128 (424)
T 2yw2_A 63 VDFTIVG-PE-APLVEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEVFTDF------------EK 128 (424)
T ss_dssp CSEEEEC-SH-HHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCH------------HH
T ss_pred CCEEEEC-Cc-hHHHHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCeEEECCH------------HH
Confidence 6777764 22 343 24445566555 555599999999999999999999999999999887541 12
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 001944 94 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 172 (993)
Q Consensus 94 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKV 172 (993)
....- ..++.|+|+||..|. -.++++..... -....++.+-+. +.|. ..+..+|+||||+ |..+.|
T Consensus 129 ~~~~~-~~~~~PvvvKp~~g~gg~Gv~~v~~~~---el~~~~~~~~~~-~~~g------~~~~~~lvEe~i~--g~E~sv 195 (424)
T 2yw2_A 129 AKEYV-EKVGAPIVVKADGLAAGKGAVVCETVE---KAIETLDRFLNK-KIFG------KSSERVVIEEFLE--GEEASY 195 (424)
T ss_dssp HHHHH-HHHCSSEEEEESSCCTTCSEEEESSHH---HHHHHHHHHHTS-CTTG------GGGSSEEEEECCC--SEEEEE
T ss_pred HHHHH-HHcCCcEEEEeCCCCCCCCEEEECCHH---HHHHHHHHHHhh-hhcc------CCCCeEEEEECCC--CcEEEE
Confidence 21111 134679999999885 12232222111 011222222110 1110 0246799999998 778888
Q ss_pred EEEC-CceeEE--EeeeC-CCCCCeeeecCCCCceeeeee-CCHHHH-----HHHHHHHHHh---CC---ceeEEEEEee
Q 001944 173 YTVG-PEYAHA--EARKS-PVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAF---RQ---AVCGFDLLRC 236 (993)
Q Consensus 173 ytVG-~~~vhA--e~RKS-P~vDG~vrrN~~gke~r~~v~-Lt~eEk-----~iA~ka~~af---gq---~VcGfDLLRs 236 (993)
.++. ++.+++ +.|.- .+.++...-|+.+-+.-.|.. |+++.. ++|.++++++ |. .+++||++.+
T Consensus 196 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~ 275 (424)
T 2yw2_A 196 IVMINGDRYVPLPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMIT 275 (424)
T ss_dssp EEEEETTEEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEE
T ss_pred EEEEcCCEEEeecceeeccccccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEe
Confidence 7763 334443 33322 223443333433333445665 888653 5677888877 43 4677999999
Q ss_pred CCCcEEEeccCc
Q 001944 237 EGRSYVCDVNGW 248 (993)
Q Consensus 237 ~g~syV~DVNGw 248 (993)
.+++||+|||.-
T Consensus 276 ~~g~~viEiN~R 287 (424)
T 2yw2_A 276 KEGPKVLEFNVR 287 (424)
T ss_dssp TTEEEEEEEESS
T ss_pred CCCcEEEEEecC
Confidence 777999999963
No 39
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.18 E-value=6.1e-12 Score=138.79 Aligned_cols=205 Identities=16% Similarity=0.139 Sum_probs=123.2
Q ss_pred cCEEeecccCCCCh-HHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 16 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 16 cD~LIsF~S~GFPL-~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
+|++|..+- .|+ ..+.+.++..+ |+.-|+.....+++||..+.++|+++|||+|++..+... ++
T Consensus 63 ~d~v~~~~E--~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~ 128 (422)
T 2xcl_A 63 VGLTIVGPE--VPLIEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYETFTSF------------DE 128 (422)
T ss_dssp EEEEEECSH--HHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCH------------HH
T ss_pred CCEEEECCc--HHHHHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEECCH------------HH
Confidence 677776432 233 34556666666 455599999999999999999999999999999888541 12
Q ss_pred eeeecCeeccCcEEEeeccccC-cceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 001944 94 FVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 172 (993)
Q Consensus 94 ~i~v~g~~~~kPfVeKpv~Ged-Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKV 172 (993)
....- ..++.|+|+||..|.. .++++..... -....++.+-.. +.|. ..+..+|+||||+ |+++.|
T Consensus 129 ~~~~~-~~~~~P~vvKp~~~~~g~Gv~~v~~~~---el~~~~~~~~~~-~~~g------~~~~~~lvEe~i~--g~E~sv 195 (422)
T 2xcl_A 129 AKAYV-QEKGAPIVIKADGLAAGKGVTVAMTEE---EAIACLHDFLED-EKFG------DASASVVIEEYLS--GEEFSL 195 (422)
T ss_dssp HHHHH-HHHCSSEEEEESSCGGGTCEEEESSHH---HHHHHHHHHHTS-CTTG------GGGSSEEEEECCC--SEEEEE
T ss_pred HHHHH-HhcCCCEEEEeCCCCCCCcEEEECCHH---HHHHHHHHHHhh-hhcc------CCCCeEEEEECCc--CcEEEE
Confidence 11110 1245799999998851 2333222111 011222222110 0010 0246799999998 889998
Q ss_pred EEEC-CceeEE--Eeee-CCCCCCeeeecCCCCceeeeee-CCHHHH-----HHHHHHHHHh---CC---ceeEEEEEee
Q 001944 173 YTVG-PEYAHA--EARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAF---RQ---AVCGFDLLRC 236 (993)
Q Consensus 173 ytVG-~~~vhA--e~RK-SP~vDG~vrrN~~gke~r~~v~-Lt~eEk-----~iA~ka~~af---gq---~VcGfDLLRs 236 (993)
.++. ++.+++ +.|. ..+.++...-|+.|-+.-.|.. |+++.. ++|.++++++ |. .+++||++.+
T Consensus 196 ~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~ 275 (422)
T 2xcl_A 196 MAFVKGEKVYPMVIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLT 275 (422)
T ss_dssp EEEEETTEEEECCCBEEEEEEEGGGEEEEEEEEEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEE
T ss_pred EEEEcCCEEEecceeeeeehhcCCCCCCCCCCCeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEe
Confidence 8873 333343 2221 1122332222332323334555 887643 3677788776 44 4577899999
Q ss_pred CCCcEEEeccC
Q 001944 237 EGRSYVCDVNG 247 (993)
Q Consensus 237 ~g~syV~DVNG 247 (993)
.+++||+|||.
T Consensus 276 ~~g~~viEiN~ 286 (422)
T 2xcl_A 276 ENGSKVIEFNA 286 (422)
T ss_dssp TTEEEEEEEES
T ss_pred CCCcEEEEEec
Confidence 77799999995
No 40
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.17 E-value=2.3e-10 Score=127.05 Aligned_cols=196 Identities=16% Similarity=0.221 Sum_probs=125.2
Q ss_pred cCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 001944 16 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 95 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 95 (993)
||+++ +-... |...++++++. +..+.++..+..+++||....++|+++|||+|++..+....+ ++..
T Consensus 87 ~d~i~-~e~e~-~~~~~l~~l~~-g~~v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~----------~~~~ 153 (403)
T 3k5i_A 87 CDVVT-AEIEH-VDTYALEEVAS-EVKIEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTP----------AELA 153 (403)
T ss_dssp CSEEE-ESSSC-SCHHHHHHHTT-TSEESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEEESSCCH----------HHHH
T ss_pred CCEEE-ECCCC-CCHHHHHHHHc-CCccCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEEEEcCCCH----------HHHH
Confidence 66544 22223 33466777777 666899999999999999999999999999999999963111 1111
Q ss_pred eecCeeccCcEEEeecccc--CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 001944 96 EVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 173 (993)
Q Consensus 96 ~v~g~~~~kPfVeKpv~Ge--dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVy 173 (993)
. -...++.|+|+||..|. -.++++...... ....++.. .+..+|+||||+ .|..+.|.
T Consensus 154 ~-~~~~~g~P~VvKp~~gg~~g~Gv~~v~~~~e---l~~a~~~~---------------~~~~~lvEe~i~-~~~E~sv~ 213 (403)
T 3k5i_A 154 K-VGEQLGYPLMLKSKTMAYDGRGNFRVNSQDD---IPEALEAL---------------KDRPLYAEKWAY-FKMELAVI 213 (403)
T ss_dssp H-HHHHHCSSEEEEESSSCCTTTTEEEECSTTS---HHHHHHHT---------------TTSCEEEEECCC-EEEEEEEE
T ss_pred H-HHHHhCCCEEEEeCCCCcCCCCEEEECCHHH---HHHHHHhc---------------CCCcEEEecCCC-CCeEEEEE
Confidence 1 11235689999998763 233333322211 12222211 256799999996 37899999
Q ss_pred EECCceeEEEeeeCCCCCCeeeecCCCCceeeeee-CCHHH----HHHHHHHHHHhCCc-eeEEEEEeeC-CCcEEEecc
Q 001944 174 TVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPNE----KQMAREVCIAFRQA-VCGFDLLRCE-GRSYVCDVN 246 (993)
Q Consensus 174 tVG~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~-Lt~eE----k~iA~ka~~afgq~-VcGfDLLRs~-g~syV~DVN 246 (993)
++++..- .+--|+. ..+.++-.-.+.-.|.. |+++. +++|.++++++|.. +++||++.+. |.+||+|||
T Consensus 214 v~~~~~g---~~~~p~~-~~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~dg~~~v~EiN 289 (403)
T 3k5i_A 214 VVKTKDE---VLSYPTV-ETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLEDDSIMLCEIA 289 (403)
T ss_dssp EEECSSC---EEECCCE-EEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEETTSCEEEEEEE
T ss_pred EEEcCCC---EEEeCCe-eeEEeCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCcEEEEEee
Confidence 9876321 1223321 11222111112233555 77754 47899999999985 8999999884 569999999
Q ss_pred Cc
Q 001944 247 GW 248 (993)
Q Consensus 247 Gw 248 (993)
--
T Consensus 290 pR 291 (403)
T 3k5i_A 290 SR 291 (403)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 41
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.16 E-value=3.2e-10 Score=126.93 Aligned_cols=189 Identities=13% Similarity=0.169 Sum_probs=124.7
Q ss_pred CcCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 001944 15 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 94 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 94 (993)
.||+++. -....| ..++++++.. .++.++.....+++||....++|+++|||+|++..+... ++.
T Consensus 96 ~~D~V~~-~~e~~~-~~~~~~l~~~-~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~v~~~------------~e~ 160 (419)
T 4e4t_A 96 LCEAVST-EFENVP-AASLDFLART-TFVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESA------------AAL 160 (419)
T ss_dssp HCSEEEE-CCTTCC-HHHHHHHHTT-SEESSCHHHHHHHTCHHHHHHHHHHTTCCBCCEEEECSH------------HHH
T ss_pred cCCEEEE-ccCcCC-HHHHHHHHcc-CCcCCCHHHHHHhcCHHHHHHHHHHcCcCCCCeEEECCH------------HHH
Confidence 4888883 233445 3666677766 689999999999999999999999999999999988651 122
Q ss_pred eeecCee----ccCcEEEeec-cccC-cceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCc
Q 001944 95 VEVHGNR----FWKPFVEKPV-HGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGT 168 (993)
Q Consensus 95 i~v~g~~----~~kPfVeKpv-~Ged-Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~ 168 (993)
.... .. + +|+|+||. .|.+ .++++...... ....++. . .++.+|+||||+- +.
T Consensus 161 ~~~~-~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~e---l~~a~~~--------------~-~~~~~lvEe~i~~-~~ 219 (419)
T 4e4t_A 161 AALD-DAALDAV-LPGILKTARLGYDGKGQVRVSTARE---ARDAHAA--------------L-GGVPCVLEKRLPL-KY 219 (419)
T ss_dssp HTSC-HHHHHTT-CSEEEEESSSCCTTTTEEEECSHHH---HHHHHHH--------------T-TTCCEEEEECCCE-EE
T ss_pred HHHH-Hhhcccc-CCEEEEecCCCCCCCceEEECCHHH---HHHHHHh--------------c-CCCcEEEeecCCC-Ce
Confidence 2211 22 5 79999999 6652 33333222111 1111211 1 3577999999986 67
Q ss_pred eeEEEEECC---ceeE---EEeeeCCCCCCeeeecCCCCceeeeee-CCH----HHHHHHHHHHHHhCCc-eeEEEEEee
Q 001944 169 DVKVYTVGP---EYAH---AEARKSPVVDGVVMRNPDGKEVRYPVL-LTP----NEKQMAREVCIAFRQA-VCGFDLLRC 236 (993)
Q Consensus 169 DIKVytVG~---~~vh---Ae~RKSP~vDG~vrrN~~gke~r~~v~-Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs 236 (993)
.|-|.++++ +++. .+.+.. +|.+. +.-.|.. |++ +-+++|.++++++|.. +++||++.+
T Consensus 220 Eisv~v~~~~~G~~~~~~~~e~~~~---~g~~~------~~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~ 290 (419)
T 4e4t_A 220 EVSALIARGADGRSAAFPLAQNVHH---NGILA------LTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVL 290 (419)
T ss_dssp EEEEEEEECTTSCEEECCCEEEEEE---TTEEE------EEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEeCeEEEee---CCeEE------EEEcCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEe
Confidence 899988853 2221 111111 22221 1122555 775 4567899999999986 999999998
Q ss_pred CC-CcEEEeccCc
Q 001944 237 EG-RSYVCDVNGW 248 (993)
Q Consensus 237 ~g-~syV~DVNGw 248 (993)
.+ .+||+|||--
T Consensus 291 ~dG~~~v~EiNpR 303 (419)
T 4e4t_A 291 EDGSFVANEMAPR 303 (419)
T ss_dssp TTCCEEEEEEESS
T ss_pred CCCCEEEEEEeCC
Confidence 54 5999999954
No 42
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.15 E-value=4e-10 Score=123.85 Aligned_cols=187 Identities=14% Similarity=0.246 Sum_probs=123.4
Q ss_pred cCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 001944 16 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 95 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 95 (993)
||++ .+-....+. .++++++... .+.++.....+++||....++|+++|||+|++..+... ++..
T Consensus 74 ~dvi-~~~~E~~~~-~~l~~l~~~~-~v~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~------------~~~~ 138 (377)
T 3orq_A 74 CDVI-TYEFENISA-QQLKLLCEKY-NIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKES------------TDID 138 (377)
T ss_dssp CSEE-EESSTTSCH-HHHHHHHHHS-CCTTTTHHHHHHHSHHHHHHHHHHTTCCBCCEEEECSS------------THHH
T ss_pred CCcc-eecccccCH-HHHHHHhhhc-CCCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCH------------HHHH
Confidence 7875 343355665 3555555554 45689999999999999999999999999999988651 1211
Q ss_pred eecCeeccCcEEEeecccc--CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCC-ceeEE
Q 001944 96 EVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG-TDVKV 172 (993)
Q Consensus 96 ~v~g~~~~kPfVeKpv~Ge--dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G-~DIKV 172 (993)
.. ...+++|+|+||..|. -+++++-..... ....++.. .++.+|+||||+ | ..+.|
T Consensus 139 ~~-~~~~g~P~vvKp~~gg~~g~Gv~~v~~~~e---l~~a~~~~---------------~~~~~ivEe~i~--g~~E~sv 197 (377)
T 3orq_A 139 KA-IETLGYPFIVKTRFGGYDGKGQVLINNEKD---LQEGFKLI---------------ETSECVAEKYLN--IKKEVSL 197 (377)
T ss_dssp HH-HHHTCSSEEEEESSSCCTTTTEEEECSTTS---HHHHHHHH---------------TTSCEEEEECCC--EEEEEEE
T ss_pred HH-HHHcCCCEEEEeCCCCCCCCCeEEECCHHH---HHHHHHhc---------------CCCcEEEEccCC--CCEEEEE
Confidence 11 1235689999999873 233333222111 11222211 237799999998 5 78999
Q ss_pred EEE-CC--ceeEEEeeeCCCC-----CCeeeecCCCCceeeeeeCCH--HHHHHHHHHHHHhCCc-eeEEEEEee-CCCc
Q 001944 173 YTV-GP--EYAHAEARKSPVV-----DGVVMRNPDGKEVRYPVLLTP--NEKQMAREVCIAFRQA-VCGFDLLRC-EGRS 240 (993)
Q Consensus 173 ytV-G~--~~vhAe~RKSP~v-----DG~vrrN~~gke~r~~v~Lt~--eEk~iA~ka~~afgq~-VcGfDLLRs-~g~s 240 (993)
.++ +. ++.. -|+. +|.+. +.-.|..+++ +-+++|.++++++|.. +++||++.+ +|++
T Consensus 198 ~~~~~~~g~~~~-----~~~~e~~~~~g~~~------~~~~Pa~l~~~~~~~~~a~~i~~~lg~~G~~~ve~~~~~~g~~ 266 (377)
T 3orq_A 198 TVTRGNNNQITF-----FPLQENEHRNQILF------KTIVPARIDKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQL 266 (377)
T ss_dssp EEEECGGGCEEE-----CCCEEEEEETTEEE------EEEESCSSCCHHHHHHHHHHHHTTSCCCEEEEEEEEEETTCCE
T ss_pred EEEEeCCCCEEE-----ECCEeEEEECCEEE------EEECCCCCCHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcE
Confidence 998 43 2211 1211 23321 2223445554 6778999999999996 999999998 6779
Q ss_pred EEEeccCcc
Q 001944 241 YVCDVNGWS 249 (993)
Q Consensus 241 yV~DVNGwS 249 (993)
||+|||--.
T Consensus 267 ~v~EinpR~ 275 (377)
T 3orq_A 267 YVNEIAPRP 275 (377)
T ss_dssp EEEEEESSC
T ss_pred EEEEeeCCc
Confidence 999999654
No 43
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.13 E-value=2e-11 Score=136.39 Aligned_cols=205 Identities=13% Similarity=0.145 Sum_probs=121.4
Q ss_pred cCEEeecccCCCCh-HHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 16 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 16 cD~LIsF~S~GFPL-~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
+|++|...- .|+ ..+.+.++..+ |+.-|+.....+++||..+.++|+++|||+|++..+... ++
T Consensus 89 ~d~V~~~~E--~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~ 154 (452)
T 2qk4_A 89 IEFVVVGPE--APLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKP------------EE 154 (452)
T ss_dssp CCEEEECSS--HHHHTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEEEESSH------------HH
T ss_pred CCEEEECCc--HHHHHHHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCH------------HH
Confidence 577776422 332 24455555555 455599999999999999999999999999999887541 12
Q ss_pred eeeecCeeccCc-EEEeeccccC-cceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 001944 94 FVEVHGNRFWKP-FVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 171 (993)
Q Consensus 94 ~i~v~g~~~~kP-fVeKpv~Ged-Hni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIK 171 (993)
....- ..++.| +|+||..|.. .++++. .+.. -....++.+-+. +.|. ..+..+|+||||+ |.++.
T Consensus 155 ~~~~~-~~~g~P~vvvKp~~~~gg~Gv~~v--~~~~-el~~~~~~~~~~-~~~g------~~~~~~lvEe~i~--G~E~s 221 (452)
T 2qk4_A 155 ACSFI-LSADFPALVVKASGLAAGKGVIVA--KSKE-EACKAVQEIMQE-KAFG------AAGETIVIEELLD--GEEVS 221 (452)
T ss_dssp HHHHH-HHCSSCEEEEEESBC---CCEEEC--SSHH-HHHHHHHHHTTC--------------CCEEEEECCC--SEEEE
T ss_pred HHHHH-HhCCCCeEEEEeCCCCCCCCEEEe--CCHH-HHHHHHHHHHhh-hhcc------CCCCeEEEEECCC--CCeEE
Confidence 11111 134689 9999998851 222221 1110 011122222110 0010 0246799999999 89999
Q ss_pred EEEEC-Cc-eeE-EEeee-CCCCCCeeeecCCCCceeeeee-CCHHHH-----HHHHHHHHHhC------CceeEEEEEe
Q 001944 172 VYTVG-PE-YAH-AEARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAFR------QAVCGFDLLR 235 (993)
Q Consensus 172 VytVG-~~-~vh-Ae~RK-SP~vDG~vrrN~~gke~r~~v~-Lt~eEk-----~iA~ka~~afg------q~VcGfDLLR 235 (993)
|.+++ ++ +++ ...|. -...++...-|+.+-+.-.|.. |+++.. ++|.+++++++ ..+++||++.
T Consensus 222 v~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~ 301 (452)
T 2qk4_A 222 CLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIML 301 (452)
T ss_dssp EEEEECSSCEEECCCBEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEE
T ss_pred EEEEECCCEEEEcceeeecccccCCCCCCCCCCceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEE
Confidence 98884 33 332 22221 1122333333332333334555 787543 57788888873 3589999999
Q ss_pred eCCCcEEEeccC
Q 001944 236 CEGRSYVCDVNG 247 (993)
Q Consensus 236 s~g~syV~DVNG 247 (993)
+.+++||+|||.
T Consensus 302 ~~~g~~viEiN~ 313 (452)
T 2qk4_A 302 TKNGPKVLEFNC 313 (452)
T ss_dssp ETTEEEEEEEES
T ss_pred eCCCcEEEEEec
Confidence 876799999995
No 44
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.13 E-value=2.7e-10 Score=123.27 Aligned_cols=176 Identities=15% Similarity=0.191 Sum_probs=122.6
Q ss_pred CcCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 001944 15 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 94 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 94 (993)
.||.++..|..=..+.-+.+..+....++.++.++..+++||....++|+++|||+|.+.
T Consensus 63 ~~D~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~dK~~~k~~l~~~gip~~~~~-------------------- 122 (363)
T 4ffl_A 63 RVDAVLPVNENLACIEFLNSIKEKFSCPVLFDFEAYRISRDKKKSKDYFKSIGVPTPQDR-------------------- 122 (363)
T ss_dssp SSSEEEECCCCHHHHHHHHHHGGGCSSCBCCCHHHHHHHTSHHHHHHHHHHTTCCCCCBS--------------------
T ss_pred CCCEEEECCCChhHHHHHHHHHHHCCCccCCCHHHHHHhhCHHHHHHHHHhcCCCCCCce--------------------
Confidence 488888776421123334444555666788999999999999999999999999998641
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEE
Q 001944 95 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 174 (993)
Q Consensus 95 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKVyt 174 (993)
.+++|+|+||..|. .|.|++ .+.|.... ......++.||||. |..+-|.+
T Consensus 123 ------~ig~P~vvKp~~g~-----------g~~gv~----~v~~~~~~-------~~~~~~~~~ee~i~--g~e~sv~~ 172 (363)
T 4ffl_A 123 ------PSKPPYFVKPPCES-----------SSVGAR----IIYDDKDL-------EGLEPDTLVEEYVE--GEVVSLEV 172 (363)
T ss_dssp ------CSSSCEEEECSSCC-----------TTTTCE----EEC-------------CCCTTCEEEECCC--SEEEEEEE
T ss_pred ------ecCCCEEEEECCCC-----------CCcCeE----EeccHHHh-------hhhccchhhhhhcc--CcEEEEEE
Confidence 13579999999886 333442 34332221 12466789999996 67777766
Q ss_pred ECCc--ee-EEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhCCc-eeEEEEEeeCCCcEEEeccC
Q 001944 175 VGPE--YA-HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNG 247 (993)
Q Consensus 175 VG~~--~v-hAe~RKSP~vDG~vrrN~~gke~r~~v~Lt~eEk~iA~ka~~afgq~-VcGfDLLRs~g~syV~DVNG 247 (993)
++.. .+ +...+. ...+..+...-.|..+.++-+++|.++++++|.. +++||++.+.+++||+|||-
T Consensus 173 ~~d~~~~~~~~~~~~-------~~~~~~~~~~~~p~~~~~~~~~~a~~~~~~l~~~G~~~vef~~~~~~~~viEiN~ 242 (363)
T 4ffl_A 173 VGDGSHFAVVKETLV-------HIDETYDCHMVTPLPANPLFRQISHDLAANLPLKGIMDVEAIFGPKGLRVIEIDA 242 (363)
T ss_dssp EEESSCEEECCCEEE-------EECTTSCEEEEEECCCCHHHHHHHHHHHHTTTCEEEEEEEEEEETTEEEEEEEEC
T ss_pred EEECCeEEEEEEEEe-------ccCCcccceeecchhHHHHHHHHHHHHHHhCCccceeeeeeEEeCCeEEEEEEeC
Confidence 6432 22 112221 1223344455567788999999999999999975 99999999999999999996
No 45
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.12 E-value=1.1e-09 Score=121.21 Aligned_cols=204 Identities=16% Similarity=0.197 Sum_probs=120.0
Q ss_pred cCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 001944 16 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 95 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 95 (993)
.|.+|++.-.+.|+ |-.-++..+-+ =|+.++..+++||....++|+++|||+|++..+... ++.
T Consensus 76 id~V~~~~e~~~~~--~a~l~e~lglp-g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~~- 139 (425)
T 3vot_A 76 FDGVMTLFEPALPF--TAKAAEALNLP-GLPFTTMENCRNKNKTRSILQQNGLNTPVFHEFHTL------------ADL- 139 (425)
T ss_dssp CSEEECCCGGGHHH--HHHHHHHTTCS-SCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSG------------GGG-
T ss_pred CCEEEECCchhHHH--HHHHHHHcCCC-CCCHHHHHHhhCHHHHHHHHHHCCCCCCceeccCcH------------HHH-
Confidence 45666654333232 22222333322 368889999999999999999999999999988652 111
Q ss_pred eecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEE
Q 001944 96 EVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVY 173 (993)
Q Consensus 96 ~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-~~r~~gsyIyEEFi~t~G~DIKVy 173 (993)
....+++|+|+||..|. -.+|++-..... ....++.+...+.. ... ....+..+|.||||+-.--.|-++
T Consensus 140 --~~~~~g~P~vvKp~~g~gs~Gv~~v~~~~e---l~~a~~~~~~~~~~---~~~~~~~~~~~~lvEe~i~G~e~sv~~~ 211 (425)
T 3vot_A 140 --ENRKLSYPLVVKPVNGFSSQGVVRVDDRKE---LEEAVRKVEAVNQR---DLNRFVHGKTGIVAEQFIDGPEFAIETL 211 (425)
T ss_dssp --TTCCCCSSEEEEESCC-----CEEECSHHH---HHHHHHHHHHHTTS---SHHHHHTTCCCEEEEECCCSCEEEEEEE
T ss_pred --HHhhcCCcEEEEECCCCCCCCceEechHHH---HHHHHHHHHhhhhh---hhhhhccCCCcEEEEEEecCcEEEEEEE
Confidence 12356789999999885 112222111110 11222222100000 000 112467799999997443455566
Q ss_pred EECCceeE-EEeeeCCCCCCeeeecCCCCceeeeeeCCHHH----HHHHHHHHHHhCC--ceeEEEEEeeC-CCcEEEec
Q 001944 174 TVGPEYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ--AVCGFDLLRCE-GRSYVCDV 245 (993)
Q Consensus 174 tVG~~~vh-Ae~RKSP~vDG~vrrN~~gke~r~~v~Lt~eE----k~iA~ka~~afgq--~VcGfDLLRs~-g~syV~DV 245 (993)
+.++++.. +..++-.. .|. +....+...|..|+++. .++|.++++++|. .++++|++.+. |.+||+||
T Consensus 212 ~~~g~~~~~~~~~~~~~-~~~---~~~~~~~~~Pa~l~~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~dG~~~~iEi 287 (425)
T 3vot_A 212 SIQGNVHVLSIGYKGNS-KGP---FFEEGVYIAPAQLKEETRLAIVKEVTGAVSALGIHQGPAHTELRLDKDGTPYVIEV 287 (425)
T ss_dssp EETTEEEEEEEEEEECC-CCS---BCCCCEEEESCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEECTTCCEEEEEE
T ss_pred EeCCcEEEEeEEEEecc-CCC---ccccceEeecccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEEEeCCcEEEEEE
Confidence 66666533 33333321 221 22234445677888754 4678999999996 49999999875 45999999
Q ss_pred cC
Q 001944 246 NG 247 (993)
Q Consensus 246 NG 247 (993)
|.
T Consensus 288 N~ 289 (425)
T 3vot_A 288 GA 289 (425)
T ss_dssp ES
T ss_pred ec
Confidence 95
No 46
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.10 E-value=4e-10 Score=126.88 Aligned_cols=205 Identities=14% Similarity=0.141 Sum_probs=128.9
Q ss_pred cCEEeecccCCCChH-HHHHHHhhcCCccc-CCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 16 CDCLIAFYSSGYPLE-KAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 16 cD~LIsF~S~GFPL~-KAi~y~~lr~p~~i-Ndl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
+|.+|.. ...||- ...+.++..+..++ |+..+..++.||..+.++|+++|||+|++..+.... +..+
T Consensus 84 id~vv~g--~E~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~---------ea~~ 152 (442)
T 3lp8_A 84 IELVVIG--PETPLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDTN---------SAYK 152 (442)
T ss_dssp CCEEEEC--SHHHHHTTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEEESSHH---------HHHH
T ss_pred CCEEEEC--CcHHHHHHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEEEECCHH---------HHHH
Confidence 5777752 223443 34556666665555 999999999999999999999999999998885510 1112
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 001944 94 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 172 (993)
Q Consensus 94 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKV 172 (993)
++. .++.|+|+||..|. -.++++-..... ....++.+-.. ..|. ..+..+|+||||+ |+++-|
T Consensus 153 ~~~----~~g~PvVvKp~~~~gg~GV~iv~~~ee---l~~a~~~~~~~-~~~g------~~~~~vlvEe~i~--G~E~sv 216 (442)
T 3lp8_A 153 FID----KHKLPLVVKADGLAQGKGTVICHTHEE---AYNAVDAMLVH-HKFG------EAGCAIIIEEFLE--GKEISF 216 (442)
T ss_dssp HHH----HSCSSEEEEESSCCTTTSEEEESSHHH---HHHHHHHHHTS-CTTG------GGGSSEEEEECCC--SEEEEE
T ss_pred HHH----HcCCcEEEeECCCCCCCeEEEeCCHHH---HHHHHHHHHhh-cccC------CCCCeEEEEEeec--CcEEEE
Confidence 222 24689999999875 222222221110 11222222100 0111 1235799999999 788888
Q ss_pred EEE--CCceeE-EEee-eCCCCCCeeeecCCCCceeeeee-CCHHHHHH--------HHHHHHHhCCcee---EEEEEee
Q 001944 173 YTV--GPEYAH-AEAR-KSPVVDGVVMRNPDGKEVRYPVL-LTPNEKQM--------AREVCIAFRQAVC---GFDLLRC 236 (993)
Q Consensus 173 ytV--G~~~vh-Ae~R-KSP~vDG~vrrN~~gke~r~~v~-Lt~eEk~i--------A~ka~~afgq~Vc---GfDLLRs 236 (993)
.++ |..++. +..| .-+..||+.--|+-|-+.-.|.. |+++..+- |.++.+++|..+. ++|++.+
T Consensus 217 ~~~~dg~~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~ 296 (442)
T 3lp8_A 217 FTLVDGSNPVILGVAQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIK 296 (442)
T ss_dssp EEEEESSCEEEEEEEEECCEEEGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEE
T ss_pred EEEECCCeEEEeEEeEeeeecccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEe
Confidence 777 434432 3322 22334555556666666666776 88865543 5566688887554 5999999
Q ss_pred CCCcEEEeccC
Q 001944 237 EGRSYVCDVNG 247 (993)
Q Consensus 237 ~g~syV~DVNG 247 (993)
.+++||+|||-
T Consensus 297 ~~g~~viEiN~ 307 (442)
T 3lp8_A 297 KNEPKLLEYNV 307 (442)
T ss_dssp TTEEEEEEEES
T ss_pred CCCeEEEEEec
Confidence 88899999994
No 47
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.09 E-value=8.8e-11 Score=130.76 Aligned_cols=197 Identities=17% Similarity=0.252 Sum_probs=125.0
Q ss_pred CcCEEeecccCCC-Ch-HHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccc
Q 001944 15 ICDCLIAFYSSGY-PL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 89 (993)
Q Consensus 15 ~cD~LIsF~S~GF-PL-~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~ 89 (993)
.||++|..| || |- ..+.+.++..+ |++-|+.+...+++||..+.++|+++|||+|++. .+..
T Consensus 74 ~~d~v~~~~--g~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~----------- 140 (449)
T 2w70_A 74 GAVAIHPGY--GFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGD----------- 140 (449)
T ss_dssp TCCEEECCS--STTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCSSCCCS-----------
T ss_pred CCCEEEECC--CCcccCHHHHHHHHHcCCceECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccccCC-----------
Confidence 478888764 33 21 12345565555 4567899999999999999999999999999986 4433
Q ss_pred cccce-eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-------cCcceEEee
Q 001944 90 EEEDF-VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEE 161 (993)
Q Consensus 90 e~~d~-i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-------~~gsyIyEE 161 (993)
.++. ...- ..++.|+|+||..|. .|-|+. .+.|.. ++..-+.... .++.+|+||
T Consensus 141 -~~~~~~~~~-~~~g~PvvvKp~~g~-----------gg~Gv~----~v~~~~-el~~~~~~~~~~~~~~~~~~~~lvEe 202 (449)
T 2w70_A 141 -DMDKNRAIA-KRIGYPVIIKASGGG-----------GGRGMR----VVRGDA-ELAQSISMTRAEAKAAFSNDMVYMEK 202 (449)
T ss_dssp -CHHHHHHHH-HHHCSSEEEEETTCC-----------TTTTCE----EECSHH-HHHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred -HHHHHHHHH-HHhCCcEEEEECCCC-----------CCCCEE----EeCCHH-HHHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 1122 1111 124689999999986 333332 122221 1110000110 156899999
Q ss_pred ccCCCCceeEEEEEC---CceeEEEeeeCCCCCCeeeecCCCCceeeeee-CCHH----HHHHHHHHHHHhCCc-eeEEE
Q 001944 162 FMPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPN----EKQMAREVCIAFRQA-VCGFD 232 (993)
Q Consensus 162 Fi~t~G~DIKVytVG---~~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~-Lt~e----Ek~iA~ka~~afgq~-VcGfD 232 (993)
||+- ++++.|.+++ +++++...|..+ +.++-..-....|.. |+++ -.++|.++++++|.. +++||
T Consensus 203 ~i~g-~~e~~v~~~~~~~G~~~~~~~~~~~-----~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve 276 (449)
T 2w70_A 203 YLEN-PRHVEIQVLADGQGNAIYLAERDCS-----MQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFE 276 (449)
T ss_dssp CCSS-CEEEEEEEEECTTSCEEEEEEEEEE-----EEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred ccCC-CeEEEEEEEEcCCCCEEEEeceecc-----cccCCcceeeeCCcccCCHHHHHHHHHHHHHHHHHcCCCceEEEE
Confidence 9974 4788888876 457776666432 111110001112433 6653 467899999999975 78999
Q ss_pred EEeeCCCcEEEeccCc
Q 001944 233 LLRCEGRSYVCDVNGW 248 (993)
Q Consensus 233 LLRs~g~syV~DVNGw 248 (993)
++.+.|++||+|||.-
T Consensus 277 ~~~~~~~~~viEiN~R 292 (449)
T 2w70_A 277 FLFENGEFYFIEMNTR 292 (449)
T ss_dssp EEEETTEEEEEEEECS
T ss_pred EEEECCCEEEEEEECC
Confidence 9999888999999964
No 48
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.08 E-value=1.3e-09 Score=120.34 Aligned_cols=187 Identities=11% Similarity=0.100 Sum_probs=127.0
Q ss_pred CcCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 001944 15 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 94 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 94 (993)
.||+++.=|. -.|. .++++++... ++.++..+..++.||...-++|+++|||+|++..+... ++.
T Consensus 42 ~~d~it~e~e-~v~~-~~l~~l~~~~-~v~p~~~a~~~~~DK~~~k~~l~~~GIptp~~~~v~~~------------~e~ 106 (355)
T 3eth_A 42 QQSVITAEIE-RWPE-TALTRQLARH-PAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAER------------SEW 106 (355)
T ss_dssp TTSEEEESCS-CCCC-CHHHHHHHTC-TTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEEEECCG------------GGH
T ss_pred cCCEEEECcC-CcCH-HHHHHHHhcC-CcCCCHHHHHHhcCHHHHHHHHHHCccCCCCEEEECCH------------HHH
Confidence 7888876553 4565 5777787776 89999999999999999999999999999999988651 122
Q ss_pred eeecCeeccCcEEEeeccc-cCcceeEEeccCCCChHHHHHhhcCC--CcccccccccccccCcceEEeeccCCCCceeE
Q 001944 95 VEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGN--RSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 171 (993)
Q Consensus 95 i~v~g~~~~kPfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign--~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIK 171 (993)
.. ....+++|+|+||..+ . .|-|+. + +.+ .+ ++... .. + .+|+||||+- |..|-
T Consensus 107 ~~-~~~~~G~P~VvKp~~~G~-----------~GkGv~-~---v~~~~~~-el~~a--~~--~-~vivEe~I~~-~~Eis 163 (355)
T 3eth_A 107 PA-VFDRLGELAIVKRRTGGY-----------DGRGQW-R---LRANETE-QLPAE--CY--G-ECIVEQGINF-SGEVS 163 (355)
T ss_dssp HH-HHHHHCSEEEEEESSSCC-----------TTTTEE-E---EETTCGG-GSCGG--GT--T-TEEEEECCCC-SEEEE
T ss_pred HH-HHHHcCCCEEEEecCCCC-----------CCCeEE-E---EcCCCHH-HHHHH--hh--C-CEEEEEccCC-CcEEE
Confidence 22 1124568999999985 6 344442 2 222 11 11111 11 1 6999999984 77888
Q ss_pred EEEECC---ceeE---EEeeeCCCCCCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhCC-ceeEEEEEeeCCCc
Q 001944 172 VYTVGP---EYAH---AEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLRCEGRS 240 (993)
Q Consensus 172 VytVG~---~~vh---Ae~RKSP~vDG~vrrN~~gke~r~~v~Lt~e----Ek~iA~ka~~afgq-~VcGfDLLRs~g~s 240 (993)
|.+++. +++. .+.... +|.+. +.-.|..|+++ -+++|.++++++|. .+++||++.+.+++
T Consensus 164 v~v~~~~~G~~~~~p~~e~~~~---~g~~~------~~~~pa~l~~~~~~~~~~~a~~i~~aLg~~G~~~vEf~~~~~~~ 234 (355)
T 3eth_A 164 LVGARGFDGSTVFYPLTHNLHQ---DGILR------TSVAFPQANAQQQARAEEMLSAIMQELGYVGVMAMECFVTPQGL 234 (355)
T ss_dssp EEEEECTTSCEEECCCEEEEEE---TTEEE------EEEECSSCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTEE
T ss_pred EEEEEcCCCCEEEECCEEEEee---CCeEE------EEECCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEECCcE
Confidence 888843 2221 111111 23321 12234567765 36789999999987 49999999998899
Q ss_pred EEEeccCc
Q 001944 241 YVCDVNGW 248 (993)
Q Consensus 241 yV~DVNGw 248 (993)
||+|||-=
T Consensus 235 ~v~EinpR 242 (355)
T 3eth_A 235 LINELAPR 242 (355)
T ss_dssp EEEEEESS
T ss_pred EEEEeeCC
Confidence 99999954
No 49
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.06 E-value=4.4e-10 Score=126.03 Aligned_cols=206 Identities=15% Similarity=0.086 Sum_probs=129.1
Q ss_pred cCEEeecccCCCCh-HHHHHHHhhcCCcc-cCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 001944 16 CDCLIAFYSSGYPL-EKAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 93 (993)
Q Consensus 16 cD~LIsF~S~GFPL-~KAi~y~~lr~p~~-iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 93 (993)
+|.+|.. .+.|| ....+.++..+..+ -++..+..++.||..+.++|+++|||+|++..+.... +...
T Consensus 68 id~vv~g--~e~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~~~~~~~---------ea~~ 136 (431)
T 3mjf_A 68 IGLTIVG--PEAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDVE---------AALA 136 (431)
T ss_dssp EEEEEEC--SHHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEEEESCHH---------HHHH
T ss_pred cCEEEEC--CchHHHHHHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEeeCCHH---------HHHH
Confidence 5777653 33454 23556666666544 4999999999999999999999999999998885510 1112
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 001944 94 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 172 (993)
Q Consensus 94 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~DIKV 172 (993)
++. .++.|+|+||..|. -.+|++-..... ....++.+-.. ..|. ..+..+|+||||+ |.++.|
T Consensus 137 ~~~----~~g~PvVvKp~~~~gg~GV~iv~~~~e---l~~a~~~~~~~-~~~g------~~~~~vlvEe~i~--G~E~sv 200 (431)
T 3mjf_A 137 YVR----QKGAPIVIKADGLAAGKGVIVAMTQEE---AETAVNDMLAG-NAFG------DAGHRIVVEEFLD--GEEASF 200 (431)
T ss_dssp HHH----HHCSSEEEEESSSCTTCSEEEECSHHH---HHHHHHHHHTT-HHHH------CCCCCEEEEECCC--SEEEEE
T ss_pred HHH----HcCCeEEEEECCCCCCCcEEEeCCHHH---HHHHHHHHHhh-cccc------CCCCeEEEEEeeC--CcEEEE
Confidence 222 34689999999875 222222221110 11122211100 0010 1245799999999 788888
Q ss_pred EEE--CCceeEE-Ee-eeCCCCCCeeeecCCCCceeeeee-CCHHHHHHHH--------HHHHHhCCcee---EEEEEee
Q 001944 173 YTV--GPEYAHA-EA-RKSPVVDGVVMRNPDGKEVRYPVL-LTPNEKQMAR--------EVCIAFRQAVC---GFDLLRC 236 (993)
Q Consensus 173 ytV--G~~~vhA-e~-RKSP~vDG~vrrN~~gke~r~~v~-Lt~eEk~iA~--------ka~~afgq~Vc---GfDLLRs 236 (993)
.++ |..++.. +. +..++.||+..-|+-|-+.-.|.. |+++..+-+. ++.+++|..+. .+|++.+
T Consensus 201 ~~~~dg~~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~ 280 (431)
T 3mjf_A 201 IVMVDGENVLPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMIS 280 (431)
T ss_dssp EEEEESSCEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEC
T ss_pred EEEEcCCEEEEEEeeEeceecccCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEe
Confidence 777 3344331 11 222334666666776766677887 8987765444 45577787554 4999998
Q ss_pred CCC-cEEEeccCc
Q 001944 237 EGR-SYVCDVNGW 248 (993)
Q Consensus 237 ~g~-syV~DVNGw 248 (993)
.++ +||+|||--
T Consensus 281 ~~g~~~viEiN~R 293 (431)
T 3mjf_A 281 ADGQPKVIEFNCR 293 (431)
T ss_dssp TTSCEEEEEECGG
T ss_pred CCCCeEEEEEecC
Confidence 666 999999943
No 50
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.06 E-value=1.7e-10 Score=121.99 Aligned_cols=175 Identities=15% Similarity=0.106 Sum_probs=101.5
Q ss_pred HHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecc
Q 001944 33 ESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVH 112 (993)
Q Consensus 33 i~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~ 112 (993)
++.++..+..++|+.....+++||....++|+++|||+|++ +.. + ++ +.+|+|+||..
T Consensus 78 ~~~le~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~--~----------~~--------l~~P~vvKP~~ 135 (334)
T 2r85_A 78 IELVENMKVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEV--YED--P----------DD--------IEKPVIVKPHG 135 (334)
T ss_dssp HHHHHTCCSCBBSCTTHHHHHHSHHHHHHHHHHTTCCCCCB--CSC--G----------GG--------CCSCEEEEECC
T ss_pred HHHHHHcCCCccCCHHHHHHHHhHHHHHHHHHHcCCCCCCc--cCC--h----------HH--------cCCCEEEEeCC
Confidence 34445566557799899999999999999999999999999 322 1 11 23799999999
Q ss_pred cc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce-----------eEEEEECCcee
Q 001944 113 GD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD-----------VKVYTVGPEYA 180 (993)
Q Consensus 113 Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~D-----------IKVytVG~~~v 180 (993)
|. -.+|++..... -....++.+-... .| .....+|+||||+-.--+ |.++++++++.
T Consensus 136 g~~s~Gv~~v~~~~---el~~~~~~~~~~~-~~-------~~~~~~lvee~i~G~e~~~~~~~~~~~~~v~~~~~~g~~~ 204 (334)
T 2r85_A 136 AKGGKGYFLAKDPE---DFWRKAEKFLGIK-RK-------EDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYE 204 (334)
T ss_dssp ----TTCEEESSHH---HHHHHHHHHHCCC-SG-------GGCCSEEEEECCCCEEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred CCCCCCEEEECCHH---HHHHHHHHHHhhc-cc-------CCCCcEEEEeccCCceeEEEEeecCcCceeeeeeeccEEE
Confidence 85 12222221110 0111222110000 00 123679999999851112 33333333321
Q ss_pred EEEeeeCCCCCCeee--------ecCCCCceee---eeeCC----HHHHHHHHHHHHHhC------CceeEEEEEee-CC
Q 001944 181 HAEARKSPVVDGVVM--------RNPDGKEVRY---PVLLT----PNEKQMAREVCIAFR------QAVCGFDLLRC-EG 238 (993)
Q Consensus 181 hAe~RKSP~vDG~vr--------rN~~gke~r~---~v~Lt----~eEk~iA~ka~~afg------q~VcGfDLLRs-~g 238 (993)
.. .+|.++ .|......-. |..|+ ++-+++|.++++++| ..+++||++.+ +|
T Consensus 205 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~l~~~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~~g 277 (334)
T 2r85_A 205 SN-------VDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDL 277 (334)
T ss_dssp EE-------GGGGGGSCHHHHTTSCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECTTS
T ss_pred ec-------cCcccccccccccccccCCceeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcccccccEEEEEEECCCC
Confidence 10 011111 0000001111 55666 677889999999995 67899999988 46
Q ss_pred CcEEEeccC
Q 001944 239 RSYVCDVNG 247 (993)
Q Consensus 239 ~syV~DVNG 247 (993)
++||+|||.
T Consensus 278 ~~~viEiN~ 286 (334)
T 2r85_A 278 EFVVFEISA 286 (334)
T ss_dssp CEEEEEEEC
T ss_pred CEEEEEEeC
Confidence 799999994
No 51
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.05 E-value=2e-10 Score=128.02 Aligned_cols=196 Identities=17% Similarity=0.296 Sum_probs=123.3
Q ss_pred CcCEEeecccCCC-Ch-HHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccc
Q 001944 15 ICDCLIAFYSSGY-PL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 89 (993)
Q Consensus 15 ~cD~LIsF~S~GF-PL-~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~ 89 (993)
.+|++|.-| || |= -.+.+.++..+ |++-|+.....+++||..+.++|+++|||+|++. .+..
T Consensus 73 ~~d~v~~~~--g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~----------- 139 (451)
T 1ulz_A 73 GADAIHPGY--GFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKS----------- 139 (451)
T ss_dssp TCCEEECCS--STTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSSCCC-----------
T ss_pred CCCEEEECC--CccccCHHHHHHHHHCCCeEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCC-----------
Confidence 478888764 33 21 13345555555 4566999999999999999999999999999986 4433
Q ss_pred cccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-------cCcceEEeec
Q 001944 90 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEF 162 (993)
Q Consensus 90 e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-------~~gsyIyEEF 162 (993)
.++....- ..+++|+|+||..|. .|-|+. + +.+... +..-+.... .++.+|+|||
T Consensus 140 -~~~~~~~~-~~~g~PvvvKp~~g~-----------gg~Gv~-~---v~~~~e-l~~~~~~~~~~~~~~~~~~~~lvEe~ 201 (451)
T 1ulz_A 140 -LEEAKALA-REIGYPVLLKATAGG-----------GGRGIR-I---CRNEEE-LVKNYEQASREAEKAFGRGDLLLEKF 201 (451)
T ss_dssp -HHHHHHHH-HHHCSSEEEEECSSS-----------SCCSCE-E---ESSHHH-HHHHHHHHHHHHHHTTSCCCEEEEEC
T ss_pred -HHHHHHHH-HHcCCCEEEEECCCC-----------CCccEE-E---eCCHHH-HHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 11222111 134689999999986 333432 1 221111 110000000 1568999999
Q ss_pred cCCCCceeEEEEEC---CceeEEEeeeCCCCCCeeeecCCCC-ceeeeee-CCHH----HHHHHHHHHHHhCCc-eeEEE
Q 001944 163 MPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGK-EVRYPVL-LTPN----EKQMAREVCIAFRQA-VCGFD 232 (993)
Q Consensus 163 i~t~G~DIKVytVG---~~~vhAe~RKSP~vDG~vrrN~~gk-e~r~~v~-Lt~e----Ek~iA~ka~~afgq~-VcGfD 232 (993)
|+- ++++.|.+++ +++++...|..+ +.++ +.+ ....|.. |+++ -+++|.++++++|.. +++||
T Consensus 202 i~g-~~e~~v~v~~~~~G~~~~~~~~~~~-----~~~~-~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve 274 (451)
T 1ulz_A 202 IEN-PKHIEYQVLGDKHGNVIHLGERDCS-----IQRR-NQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTME 274 (451)
T ss_dssp CCS-CEEEEEEEEECTTSCEEEEEEEEEE-----EEET-TEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccC-CeEEEEEEEEcCCCCEEEEeeeecc-----cccc-cccceeECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEE
Confidence 974 4788888886 356666655432 2222 111 0112443 6653 467899999999976 78899
Q ss_pred EEeeC-CCcEEEeccCc
Q 001944 233 LLRCE-GRSYVCDVNGW 248 (993)
Q Consensus 233 LLRs~-g~syV~DVNGw 248 (993)
++.+. |++||+|||.-
T Consensus 275 ~~~~~~g~~~viEiN~R 291 (451)
T 1ulz_A 275 FIADQEGNLYFIEMNTR 291 (451)
T ss_dssp EEECTTCCEEEEEEECS
T ss_pred EEEeCCCCEEEEEeeCC
Confidence 99984 56999999964
No 52
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.04 E-value=2.9e-10 Score=126.92 Aligned_cols=196 Identities=19% Similarity=0.293 Sum_probs=123.7
Q ss_pred CcCEEeecccCCCCh--HHHHHHHhhcCC-cccCCcchhhhhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccc
Q 001944 15 ICDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 89 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL--~KAi~y~~lr~p-~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~ 89 (993)
.||+++.-| ||-. ....+.++..+. ++-|+.+...+++||....++|+++|||+|++. .+..
T Consensus 78 ~~d~i~p~~--g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~----------- 144 (446)
T 3ouz_A 78 EADAIFPGY--GFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAG----------- 144 (446)
T ss_dssp TCSEEECCS--STTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSSCCS-----------
T ss_pred CcCEEEECC--cccccCHHHHHHHHHCCCceECcCHHHHHHhCCHHHHHHHHHHcCCCcCCCcccCCCC-----------
Confidence 378887654 4422 234455555554 445999999999999999999999999999986 3432
Q ss_pred cccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-------cCcceEEeec
Q 001944 90 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEF 162 (993)
Q Consensus 90 e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-------~~gsyIyEEF 162 (993)
.++.... -..+++|+|+||..|. .|.|+. + +.+....-. -....+ .++.+|+|||
T Consensus 145 -~~e~~~~-~~~~g~PvvvKp~~g~-----------gg~Gv~-~---v~~~~el~~-~~~~~~~~~~~~~~~~~~lvEe~ 206 (446)
T 3ouz_A 145 -AEAAKKL-AKEIGYPVILKAAAGG-----------GGRGMR-V---VENEKDLEK-AYWSAESEAMTAFGDGTMYMEKY 206 (446)
T ss_dssp -HHHHHHH-HHHHCSSEEEEETTCC-----------TTCSEE-E---ECSGGGHHH-HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred -HHHHHHH-HHHhCCCEEEEECCCC-----------CCCCEE-E---ECCHHHHHH-HHHHHHHHHHHhcCCCCEEEEeC
Confidence 1122211 1235689999999986 333442 2 322221111 000111 1678999999
Q ss_pred cCCCCceeEEEEECC---ceeEEEeeeCCCCCCeeee-cCCCCceeeee-eCCHH----HHHHHHHHHHHhCC-ceeEEE
Q 001944 163 MPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMR-NPDGKEVRYPV-LLTPN----EKQMAREVCIAFRQ-AVCGFD 232 (993)
Q Consensus 163 i~t~G~DIKVytVG~---~~vhAe~RKSP~vDG~vrr-N~~gke~r~~v-~Lt~e----Ek~iA~ka~~afgq-~VcGfD 232 (993)
|+- .+++.|.++++ .+++.-.|... +.+ +....+ ..|. .|+++ -.++|.++++++|. .+++||
T Consensus 207 i~g-~~e~~v~v~~d~~g~~~~~~~~~~~-----~~~~~~~~~~-~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve 279 (446)
T 3ouz_A 207 IQN-PRHIEVQVIGDSFGNVIHVGERDCS-----MQRRHQKLIE-ESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFE 279 (446)
T ss_dssp CSS-CEEEEEEEEECTTSCEEEEEEEEEE-----EEETTEEEEE-EESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCC-CcEEEEEEEEcCCCCEEEEeeceee-----eeecCceEEE-ECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEE
Confidence 985 37888888864 45666555321 222 111111 1233 46654 44689999999997 567899
Q ss_pred EEeeC-CCcEEEeccCc
Q 001944 233 LLRCE-GRSYVCDVNGW 248 (993)
Q Consensus 233 LLRs~-g~syV~DVNGw 248 (993)
++.+. |++||+|||--
T Consensus 280 ~~~~~~g~~~~iEiNpR 296 (446)
T 3ouz_A 280 FLVDKNLDFYFIEMNTR 296 (446)
T ss_dssp EEECTTCCEEEEEEESS
T ss_pred EEEeCCCCEEEEEeECC
Confidence 99986 58999999964
No 53
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.02 E-value=2.9e-10 Score=126.68 Aligned_cols=196 Identities=16% Similarity=0.238 Sum_probs=122.5
Q ss_pred CcCEEeecccCCCC--hHHHHHHHhhcCC-cccCCcchhhhhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccc
Q 001944 15 ICDCLIAFYSSGYP--LEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 89 (993)
Q Consensus 15 ~cD~LIsF~S~GFP--L~KAi~y~~lr~p-~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~ 89 (993)
.||+++..| ||- .....+.++..+. ++-++.....+++||..+.++|+++|||+|++. .+..
T Consensus 73 ~~d~v~~~~--g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~----------- 139 (451)
T 2vpq_A 73 GCDGVHPGY--GFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKD----------- 139 (451)
T ss_dssp TCSEEECCS--STTTTCHHHHHHHHTTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSCBSC-----------
T ss_pred CCCEEEECC--CccccCHHHHHHHHHcCCeEECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccCcCC-----------
Confidence 478888865 321 1134555665554 566789999999999999999999999999865 4432
Q ss_pred cccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-------cCcceEEeec
Q 001944 90 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEF 162 (993)
Q Consensus 90 e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-------~~gsyIyEEF 162 (993)
.++.... -..+++|+|+||..|. .|-|+. + +.+.+ ++..-+.... .++.+|+|||
T Consensus 140 -~~~~~~~-~~~~g~PvvvKp~~g~-----------gg~Gv~-~---v~~~~-el~~~~~~~~~~~~~~~~~~~~lvEe~ 201 (451)
T 2vpq_A 140 -VSEAKKI-AKKIGYPVIIKATAGG-----------GGKGIR-V---ARDEK-ELETGFRMTEQEAQTAFGNGGLYMEKF 201 (451)
T ss_dssp -HHHHHHH-HHHHCSSEEEEETTCC-----------TTCSEE-E---ESSHH-HHHHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred -HHHHHHH-HHhcCCcEEEEECCCC-----------CCCCEE-E---eCCHH-HHHHHHHHHHHHHHhhcCCCcEEEEEe
Confidence 1122211 1135689999999986 333432 1 22111 1110000110 2578999999
Q ss_pred cCCCCceeEEEEEC---CceeEEEeeeCCCCCCeeeecCCCC-ceeeeee-CCHH----HHHHHHHHHHHhCCc-eeEEE
Q 001944 163 MPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGK-EVRYPVL-LTPN----EKQMAREVCIAFRQA-VCGFD 232 (993)
Q Consensus 163 i~t~G~DIKVytVG---~~~vhAe~RKSP~vDG~vrrN~~gk-e~r~~v~-Lt~e----Ek~iA~ka~~afgq~-VcGfD 232 (993)
|+- ++++.|.+++ +++++...|..+ +.++ |++ ....|.. |+++ -+++|.++++++|.. +++||
T Consensus 202 i~g-~~e~~v~v~~~~~G~~~~~~~~~~~-----~~~~-~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve 274 (451)
T 2vpq_A 202 IEN-FRHIEIQIVGDSYGNVIHLGERDCT-----IQRR-MQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIE 274 (451)
T ss_dssp CCS-EEEEEEEEEECTTSCEEEEEEEEEE-----EEET-TEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCC-CeEEEEEEEEcCCCCEEEEeccccc-----hhcc-ccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEE
Confidence 974 3788887775 356665555332 2222 111 1112444 7764 467899999999976 67899
Q ss_pred EEee-C-CCcEEEeccCc
Q 001944 233 LLRC-E-GRSYVCDVNGW 248 (993)
Q Consensus 233 LLRs-~-g~syV~DVNGw 248 (993)
++.+ . |++||+|||.-
T Consensus 275 ~~~~~~~g~~~viEiN~R 292 (451)
T 2vpq_A 275 FIYDLNDNKFYFMEMNTR 292 (451)
T ss_dssp EEEETTTTEEEEEEEECS
T ss_pred EEEECCCCCEEEEEeeCC
Confidence 9998 5 55999999964
No 54
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.00 E-value=2.3e-10 Score=128.07 Aligned_cols=197 Identities=20% Similarity=0.235 Sum_probs=124.6
Q ss_pred CcCEEeecccCCCChH--HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccc
Q 001944 15 ICDCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFI 89 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~--KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~ 89 (993)
.+|.+|+-+ ||-.+ ...+.++..+ |++-|+.....++.||..+.++|+++|||+|++. .+..
T Consensus 79 ~id~v~~~~--g~~~E~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~----------- 145 (461)
T 2dzd_A 79 DVDAIHPGY--GFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDG----------- 145 (461)
T ss_dssp TCCEEECCS--SSSTTCHHHHHHHHHTTCEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCCBCSSCCSS-----------
T ss_pred CCCEEEECC--CccccCHHHHHHHHHcCCEEECCCHHHHHHhhCHHHHHHHHHHcCCCCCCCcccCcCC-----------
Confidence 378888755 44222 2344555555 4567999999999999999999999999999986 3422
Q ss_pred cccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-------cCcceEEeec
Q 001944 90 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEF 162 (993)
Q Consensus 90 e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-------~~gsyIyEEF 162 (993)
.++....- ..+++|+|+||..|. .|-|+. .+.+... +..-+.... .++.+|+|||
T Consensus 146 -~~~~~~~~-~~~g~PvvvKp~~g~-----------gg~Gv~----~v~~~~e-l~~~~~~~~~~~~~~~~~~~~lvEe~ 207 (461)
T 2dzd_A 146 -LEDVVAFA-EAHGYPIIIKAALGG-----------GGRGMR----IVRSKSE-VKEAFERAKSEAKAAFGSDEVYVEKL 207 (461)
T ss_dssp -HHHHHHHH-HHHCSCEEEEESTTC-----------SSSSEE----EECCGGG-HHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred -HHHHHHHH-HhcCCcEEEEeCCCC-----------CCCCEE----EeCCHHH-HHHHHHHHHHHHHhhcCCCcEEEEEC
Confidence 11222111 134689999999986 333432 1222211 110000000 2467999999
Q ss_pred cCCCCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeee-eCCH----HHHHHHHHHHHHhCCcee-EEEE
Q 001944 163 MPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTP----NEKQMAREVCIAFRQAVC-GFDL 233 (993)
Q Consensus 163 i~t~G~DIKVytVG~---~~vhAe~RKSP~vDG~vrrN~~gke~r~~v-~Lt~----eEk~iA~ka~~afgq~Vc-GfDL 233 (993)
|+- ++++.|-+++. ++++...|..+. .+++..-.+. .|. .|++ +-+++|.++++++|..-+ +||+
T Consensus 208 i~g-~~e~~v~v~~~~~G~~~~~~~~~~~~----~~~~~~~~~~-~P~~~l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~ 281 (461)
T 2dzd_A 208 IEN-PKHIEVQILGDYEGNIVHLYERDCSV----QRRHQKVVEV-APSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEF 281 (461)
T ss_dssp CCS-CEEEEEEEEECTTCCEEEEEEEEEEE----EETTEEEEEE-ESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCC-CeEEEEEEEEcCCCCEEEEEeccccc----cccccceEEE-CCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEE
Confidence 974 47888887753 467776664321 2222111111 133 4664 356799999999999764 4999
Q ss_pred EeeCCCcEEEeccCc
Q 001944 234 LRCEGRSYVCDVNGW 248 (993)
Q Consensus 234 LRs~g~syV~DVNGw 248 (993)
+.+.|++||+|||--
T Consensus 282 ~~~~~~~~viEiN~R 296 (461)
T 2dzd_A 282 LVSGDEFYFIEVNPR 296 (461)
T ss_dssp EEETTEEEEEEEESS
T ss_pred EEeCCCEEEEEEECC
Confidence 999888999999964
No 55
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=98.90 E-value=4.2e-09 Score=120.00 Aligned_cols=195 Identities=15% Similarity=0.148 Sum_probs=123.0
Q ss_pred CcCEEeecccCCCChHHHHHHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 001944 15 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 94 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~KAi~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 94 (993)
.+|.+++ .|+. ++..+.+.++..+.. -++..+..++.||..+.++|+++|||+|++..+... ++.
T Consensus 102 ~id~Vip-~sE~-~l~~~a~~~e~~Gi~-g~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~------------ee~ 166 (474)
T 3vmm_A 102 GADAITT-NNEL-FIAPMAKACERLGLR-GAGVQAAENARDKNKMRDAFNKAGVKSIKNKRVTTL------------EDF 166 (474)
T ss_dssp TCSEEEE-SCGG-GHHHHHHHHHHTTCC-CSCHHHHHHTTCHHHHHHHHHHTTSCCCCEEEECSH------------HHH
T ss_pred CCCEEEE-CCcc-cHHHHHHHHHHcCCC-CCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCH------------HHH
Confidence 3788888 3443 344455566666555 899999999999999999999999999999888551 122
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc-------------ccccCcceEEee
Q 001944 95 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-------------RVRREGSYIYEE 161 (993)
Q Consensus 95 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~-------------~~r~~gsyIyEE 161 (993)
... -..+++|+|+||..|. .|-|+. .+.|....-. -.. ....++.+|+||
T Consensus 167 ~~~-~~~lg~PvVVKP~~g~-----------gg~Gv~----iv~~~eel~~-a~~~~~~~~~~~~~~~a~~~~~~vlVEe 229 (474)
T 3vmm_A 167 RAA-LEEIGTPLILKPTYLA-----------SSIGVT----LITDTETAED-EFNRVNDYLKSINVPKAVTFEAPFIAEE 229 (474)
T ss_dssp HHH-HHHSCSSEEEEESSCC-----------TTTTCE----EECCTTSHHH-HHHHHHHHHTTSCCCTTCCCSCSEEEEE
T ss_pred HHH-HHHcCCCEEEEECCCC-----------cCceEE----EECCHHHHHH-HHHHHHHHHhhccccccccCCCeEEEEe
Confidence 221 1235689999999985 222332 2222221100 000 012257899999
Q ss_pred ccCCCC------------ceeEEEEECCceeE-EEeeeCCCCCCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHh
Q 001944 162 FMPTGG------------TDVKVYTVGPEYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAF 224 (993)
Q Consensus 162 Fi~t~G------------~DIKVytVG~~~vh-Ae~RKSP~vDG~vrrN~~gke~r~~v~Lt~e----Ek~iA~ka~~af 224 (993)
||+-.- -.|.+++.+++... +..++-+. .+ + .......|..|+++ -.++|.++++++
T Consensus 230 ~I~G~e~~~~q~~~~~~e~sv~~v~~dg~~~~v~i~~~~~~-~~-~----~~~~~~~Pa~l~~~~~~~l~~~a~~~~~al 303 (474)
T 3vmm_A 230 FLQGEYGDWYQTEGYSDYISIEGIMADGEYFPIAIHDKTPQ-IG-F----TETSHITPSILDEEAKKKIVEAAKKANEGL 303 (474)
T ss_dssp CCCBCHHHHCSSSSSCSEEEEEEEEETTEEEEEEEEEECCC-BT-T----BCCEEEESCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceeeeeecccccceeEEEEEEECCeEEEEEEEeeccC-CC-c----cceEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 998421 24666777766422 22222221 11 1 11122345567764 567889999999
Q ss_pred CCceeE--EEEEeeC-CCcEEEeccC
Q 001944 225 RQAVCG--FDLLRCE-GRSYVCDVNG 247 (993)
Q Consensus 225 gq~VcG--fDLLRs~-g~syV~DVNG 247 (993)
|..-+| ||++... |.+||+|||-
T Consensus 304 G~~g~~~~vef~~~~dg~~~~iEvNp 329 (474)
T 3vmm_A 304 GLQNCATHTEIKLMKNREPGLIESAA 329 (474)
T ss_dssp TCCSEEEEEEEEEEGGGEEEEEEEES
T ss_pred CCCCccEEEEEEEcCCCCEEEEEEeC
Confidence 998777 8999874 5599999993
No 56
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.90 E-value=4.5e-09 Score=124.92 Aligned_cols=196 Identities=14% Similarity=0.169 Sum_probs=98.2
Q ss_pred cCEEeecccCCCCh--HHHHHHHhhcCC-cccCCcchhhhhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCcccccccc
Q 001944 16 CDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIE 90 (993)
Q Consensus 16 cD~LIsF~S~GFPL--~KAi~y~~lr~p-~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~e 90 (993)
||+++.-| ||=- ....+.++..+. |+-++.+...++.||..+.++|+++|||+|++. .+..
T Consensus 75 ~daI~pg~--gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~GVPvpp~~~~~~~s------------ 140 (681)
T 3n6r_A 75 AQAVHPGY--GFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIED------------ 140 (681)
T ss_dssp CSCCBCCS--SSSTTCHHHHHHHHTTTCCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC-------------------
T ss_pred cCEEEECC--CccccCHHHHHHHHHcCCceECCCHHHHHHhCCHHHHHHHHHHcCcCcCCccccCcCC------------
Confidence 67777644 3311 234455555554 445999999999999999999999999999975 3322
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-------cCcceEEeecc
Q 001944 91 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFM 163 (993)
Q Consensus 91 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-------~~gsyIyEEFi 163 (993)
.++.... -..+++|+|+||..|. .|.|+ ++.+....-...+. ..+ .++.+++||||
T Consensus 141 ~~e~~~~-a~~igyPvVvKp~~gg-----------ggkGv-~iv~~~~el~~a~~----~~~~ea~~~fg~~~vlvEe~I 203 (681)
T 3n6r_A 141 ADEAVKI-SNQIGYPVMIKASAGG-----------GGKGM-RIAWNDQEAREGFQ----SSKNEAANSFGDDRIFIEKFV 203 (681)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHHHH-HHhcCCcEEEEECCCC-----------CCCCE-EEECCHHHHHHHHH----HHHHHHHHhCCCCcEEEEecc
Confidence 1122221 2345789999999886 34455 34443322122221 111 15689999999
Q ss_pred CCCCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeeee-CCHHHH----HHHHHHHHHhCCc-eeEEEEE
Q 001944 164 PTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEK----QMAREVCIAFRQA-VCGFDLL 234 (993)
Q Consensus 164 ~t~G~DIKVytVG~---~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~-Lt~eEk----~iA~ka~~afgq~-VcGfDLL 234 (993)
+. ++++-|-++++ ++++...|... ..|++....+. .|.. |+++.. ++|.++++++|.. ++.||++
T Consensus 204 ~g-~rei~V~v~~d~~G~vv~l~~rd~s----~qr~~~k~~e~-~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~ 277 (681)
T 3n6r_A 204 TQ-PRHIEIQVLCDSHGNGIYLGERECS----IQRRNQKVVEE-APSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFI 277 (681)
T ss_dssp CS-CEEEEEEEECCSSSCCEEEEEEECC----CEETTEECEEE-ESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred CC-CcEEEEEEEEeCCCCEEEEeeeecc----eeccCccEEEe-cCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEE
Confidence 86 48899988874 66787777642 13333322222 2443 777655 7899999999985 7779999
Q ss_pred eeC-CCcEEEeccCc
Q 001944 235 RCE-GRSYVCDVNGW 248 (993)
Q Consensus 235 Rs~-g~syV~DVNGw 248 (993)
... |.+|++|||--
T Consensus 278 ~d~dg~~~~lEiNpR 292 (681)
T 3n6r_A 278 VDGQKNFYFLEMNTR 292 (681)
T ss_dssp ECTTSCCCCCEEECS
T ss_pred EeCCCCEEEEecccc
Confidence 985 45999999954
No 57
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.85 E-value=4.3e-09 Score=130.61 Aligned_cols=196 Identities=15% Similarity=0.123 Sum_probs=126.4
Q ss_pred CcCEEeecccCCCChHHHHH-----HHhhcCCc-ccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 001944 15 ICDCLIAFYSSGYPLEKAES-----YATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 88 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~KAi~-----y~~lr~p~-~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~ 88 (993)
.+|+++..+...+.|+-++. .++..+.. .-|+.++..++.||....++|+++|||+|++..+...
T Consensus 82 ~~D~V~p~~g~~~~l~~~~~l~~~~~le~~gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~~~--------- 152 (1073)
T 1a9x_A 82 RPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTM--------- 152 (1073)
T ss_dssp CCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCSEEEESSH---------
T ss_pred CCCEEEeccCCchHHHHHHHHHHhhHHHHcCCeeeCCCHHHHHHhhCHHHHHHHHHHCCcCCCCEEEECCH---------
Confidence 46888876543344544432 34455544 4499999999999999999999999999999988551
Q ss_pred ccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc---ccccCcceEEeeccCC
Q 001944 89 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPT 165 (993)
Q Consensus 89 ~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~---~~r~~gsyIyEEFi~t 165 (993)
++.... -..+++|+|+||..|. .|.|+. + +.|.. ++..-.. .....+.+|+||||+-
T Consensus 153 ---~ea~~~-~~~ig~PvVvKp~~~~-----------Gg~Gv~-i---v~~~e-el~~~~~~~~~~~~~~~vlvEe~I~G 212 (1073)
T 1a9x_A 153 ---EEALAV-AADVGFPCIIRPSFTM-----------GGSGGG-I---AYNRE-EFEEICARGLDLSPTKELLIDESLIG 212 (1073)
T ss_dssp ---HHHHHH-HHHHCSSEEEEETTCC-----------TTTTCE-E---ESSHH-HHHHHHHHHHHHCTTSCEEEEECCTT
T ss_pred ---HHHHHH-HHHcCCCEEEEECCCC-----------CCCceE-E---eCCHH-HHHHHHHHHHhhCCCCcEEEEEccCC
Confidence 122221 1235689999999875 222332 1 22111 1110000 0113568999999983
Q ss_pred CCceeEEEEECCc---ee--EEEeeeCCCCCCeeeecCCCCcee--eee-eCCH----HHHHHHHHHHHHhCCc--eeEE
Q 001944 166 GGTDVKVYTVGPE---YA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTP----NEKQMAREVCIAFRQA--VCGF 231 (993)
Q Consensus 166 ~G~DIKVytVG~~---~v--hAe~RKSP~vDG~vrrN~~gke~r--~~v-~Lt~----eEk~iA~ka~~afgq~--VcGf 231 (993)
.+.+.|-++++. ++ -.+.|..| .| .|.|... .|. .|++ +-+++|.++++++|.. +|+|
T Consensus 213 -~~E~~v~v~~d~~g~~v~~~~~e~~dp--~~-----v~~g~s~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~v 284 (1073)
T 1a9x_A 213 -WKEYEMEVVRDKNDNCIIVCSIENFDA--MG-----IHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNV 284 (1073)
T ss_dssp -SEEEEEEEEECTTCCEEEEEEEEESSC--TT-----SCGGGSCEEESCCSCCHHHHHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred -CeEEEEEEEEeCCCCEEEEEEEecccC--Cc-----cccCcEEEEecCCCCCHHHHHHHHHHHHHHHHHcCcccCceEE
Confidence 268888888743 22 23345444 22 2323322 244 4887 4567899999999997 9999
Q ss_pred EEEee--CCCcEEEeccC
Q 001944 232 DLLRC--EGRSYVCDVNG 247 (993)
Q Consensus 232 DLLRs--~g~syV~DVNG 247 (993)
|++.. +|++||+|||-
T Consensus 285 df~~~~~~g~~~viEiNp 302 (1073)
T 1a9x_A 285 QFAVNPKNGRLIVIEMNP 302 (1073)
T ss_dssp EEEECTTTCCEEEEEEES
T ss_pred EEEEECCCCCEEEEEecC
Confidence 99998 47899999993
No 58
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=98.85 E-value=1.7e-09 Score=124.85 Aligned_cols=206 Identities=15% Similarity=0.147 Sum_probs=120.6
Q ss_pred cCEEeecccCCCChH--HHHHHHhhc---CCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEE-----ecc------
Q 001944 16 CDCLIAFYSSGYPLE--KAESYATLR---KPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-----NRE------ 79 (993)
Q Consensus 16 cD~LIsF~S~GFPL~--KAi~y~~lr---~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~-----~r~------ 79 (993)
+|++|+.| ||.-+ .....++.. -+++-++.....++.||..+.++|+++|||+|++..+ ..+
T Consensus 131 id~Vi~g~--G~~sE~~~~~~~l~~~g~~i~~~gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~l~ 208 (554)
T 1w96_A 131 VDAVWAGW--GHASENPLLPEKLSQSKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLV 208 (554)
T ss_dssp CSEEECCS--STTTTCTHHHHHHHHSTTCCEESSCCHHHHHHSCSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCE
T ss_pred CCEEEECC--CccccCHHHHHHHHHcCCeEEEeCCCHHHHHHHhCHHHHHHHHHHCCCCcCCcccccccccccccccccc
Confidence 78888864 44211 111223333 3577888999999999999999999999999997553 000
Q ss_pred -CCCcc-cc-ccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc---cc
Q 001944 80 -VPYQE-LD-YFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV---RR 153 (993)
Q Consensus 80 -~p~~~-~~-~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~---r~ 153 (993)
-|... .. .....++.... -..++.|+|+||..|. .|-|+. .+.+.. ++..-+... ..
T Consensus 209 ~ip~~~~~~~~~~~~~e~~~~-~~~~g~PvVvKp~~g~-----------gg~Gv~----~v~~~~-el~~a~~~~~~~~~ 271 (554)
T 1w96_A 209 SVDDDIYQKGCCTSPEDGLQK-AKRIGFPVMIKASEGG-----------GGKGIR----QVEREE-DFIALYHQAANEIP 271 (554)
T ss_dssp ECCHHHHGGGSCSSHHHHHHH-HHHHCSSEEEEETTCC-----------TTTTEE----EECSHH-HHHHHHHHHHHHST
T ss_pred ccccccccccCCCCHHHHHHH-HHHcCCCEEEEECCCC-----------CCceEE----EECCHH-HHHHHHHHHHhhcc
Confidence 00000 00 00011222221 1235689999999986 233332 222221 111000011 13
Q ss_pred CcceEEeeccCCCCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCce-eeeee-CCH----HHHHHHHHHHHHh
Q 001944 154 EGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEV-RYPVL-LTP----NEKQMAREVCIAF 224 (993)
Q Consensus 154 ~gsyIyEEFi~t~G~DIKVytVG~---~~vhAe~RKSP~vDG~vrrN~~gke~-r~~v~-Lt~----eEk~iA~ka~~af 224 (993)
++.+|+||||+. |+.+-|.++++ ++++...|... +.+. +.|-+ -.|.. +++ +-+++|.++++++
T Consensus 272 ~~~vlvEe~i~g-~~e~sv~vl~d~~G~vv~l~~~~~~-----~~~~-~~k~~~~~P~~~l~~~~~~~i~~~a~~~~~al 344 (554)
T 1w96_A 272 GSPIFIMKLAGR-ARHLEVQLLADQYGTNISLFGRDCS-----VQRR-HQKIIEEAPVTIAKAETFHEMEKAAVRLGKLV 344 (554)
T ss_dssp TCCEEEEECCCS-CEEEEEEEEECTTSCEEEEEEEEEE-----EEET-TEEEEEEESCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCC-CcEEEEEEEEcCCCCEEEEeeeeee-----eEee-ccceeeeCCCcCCCHHHHHHHHHHHHHHHHHc
Confidence 578999999984 67888887764 45554444321 1111 11111 12333 554 4577899999999
Q ss_pred CC-ceeEEEEEee--CCCcEEEeccC
Q 001944 225 RQ-AVCGFDLLRC--EGRSYVCDVNG 247 (993)
Q Consensus 225 gq-~VcGfDLLRs--~g~syV~DVNG 247 (993)
|. .+++||++.+ +|++||+|||.
T Consensus 345 g~~G~~~ve~~~~~~dg~~~~iEiN~ 370 (554)
T 1w96_A 345 GYVSAGTVEYLYSHDDGKFYFLELNP 370 (554)
T ss_dssp TCCEEEEEEEEECTTTCCEEEEEEEC
T ss_pred CCcceEEEEEEEECCCCCEEEEEeeC
Confidence 98 7999999986 46799999996
No 59
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.80 E-value=1.5e-08 Score=125.82 Aligned_cols=198 Identities=15% Similarity=0.201 Sum_probs=115.4
Q ss_pred cCEEeecccCCCChHHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 001944 16 CDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 94 (993)
Q Consensus 16 cD~LIsF~S~GFPL~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 94 (993)
+|.+|..+..-.|+ +..+.++..+ |++-|+..+..++.||....++|+++|||+|++..+.. .++.
T Consensus 635 ~d~Vi~~~g~~~~~-~la~~Le~~Gi~i~G~~~~ai~~~~DK~~~~~ll~~~GIp~P~~~~~~s------------~eea 701 (1073)
T 1a9x_A 635 PKGVIVQYGGQTPL-KLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTA------------IEMA 701 (1073)
T ss_dssp CSEEECSSSTHHHH-TTHHHHHHTTCCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCEEECCS------------HHHH
T ss_pred cceEEeecCCchHH-HHHHHHHHCCCCeeCCCHHHHHHhhCHHHHHHHHHHcCcCCCCceEECC------------HHHH
Confidence 46666543211233 3345555555 45559999999999999999999999999999998855 1222
Q ss_pred eeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCC-CceeEE
Q 001944 95 VEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG-GTDVKV 172 (993)
Q Consensus 95 i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~-G~DIKV 172 (993)
..+- ..+++|+|+||..|. -.++.|-+.... ....++..- ....+..+|+||||+.. --+|-+
T Consensus 702 ~~~~-~~ig~PvvVKP~~~~gG~Gv~iv~~~~e---l~~~~~~a~-----------~~~~~~~vlvEefI~g~~E~~V~~ 766 (1073)
T 1a9x_A 702 VEKA-KEIGYPLVVRASYVLGGRAMEIVYDEAD---LRRYFQTAV-----------SVSNDAPVLLDHFLDDAVEVDVDA 766 (1073)
T ss_dssp HHHH-HHHCSSEEEEC-------CEEEECSHHH---HHHHHHHCC-------------------EEEBCCTTCEEEEEEE
T ss_pred HHHH-HHcCCCEEEEECCCCCCCCeEEECCHHH---HHHHHHHHH-----------hhCCCCcEEEEEccCCCcEEEEEE
Confidence 2211 235689999999874 122222221110 111111110 11235679999999753 344555
Q ss_pred EEECCc-eeEEEeeeCCCCCCeeeecCCCCceeeee---eCCH----HHHHHHHHHHHHhCC-ceeEEEEEeeCCCcEEE
Q 001944 173 YTVGPE-YAHAEARKSPVVDGVVMRNPDGKEVRYPV---LLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYVC 243 (993)
Q Consensus 173 ytVG~~-~vhAe~RKSP~vDG~vrrN~~gke~r~~v---~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs~g~syV~ 243 (993)
+.-|.. ++.+..+.- .+.+.|-|+....+ .|++ +-+++|.++++++|. .++++|++..+|++||+
T Consensus 767 l~d~~~v~~~~i~e~~------~~~g~~~gd~~~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v~~~~~~vi 840 (1073)
T 1a9x_A 767 ICDGEMVLIGGIMEHI------EQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLI 840 (1073)
T ss_dssp EECSSCEEEEEEEEES------SCTTSCGGGCCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSCEEEE
T ss_pred EEECCeEEEEeeEEEE------eccCCccCCceEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCeEEEE
Confidence 544443 344443321 12344544444333 5664 567799999999999 89999999988899999
Q ss_pred eccC
Q 001944 244 DVNG 247 (993)
Q Consensus 244 DVNG 247 (993)
|||-
T Consensus 841 EvNp 844 (1073)
T 1a9x_A 841 EVNP 844 (1073)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9994
No 60
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=98.79 E-value=5.9e-09 Score=122.24 Aligned_cols=209 Identities=14% Similarity=0.107 Sum_probs=123.6
Q ss_pred CcCEEeecccCCCChH--HHHHHHhhcCCccc-CCcchhhhhhhHHHHHHHHHhCCCCCCCEEE--E--ec---------
Q 001944 15 ICDCLIAFYSSGYPLE--KAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--V--NR--------- 78 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL~--KAi~y~~lr~p~~i-Ndl~~q~ll~DR~~v~qiL~~~gIP~P~t~~--~--~r--------- 78 (993)
-||+++.-| ||--+ ...+.++..+...+ ++..+..++.||..+.++|+++|||+|++.. + ..
T Consensus 139 ~vdaV~pG~--GflsEn~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~~~~~ 216 (587)
T 3jrx_A 139 PVQAVWAGW--GHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGK 216 (587)
T ss_dssp TCSEEECCS--STTTTCTHHHHHHHTTTCEESSCCHHHHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC------CCC
T ss_pred CCCEEEeCC--CccccCHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCeeccccccccccccccccc
Confidence 356665433 33221 23345555555444 9999999999999999999999999999764 0 00
Q ss_pred c--CCC-cccccccc-ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc---
Q 001944 79 E--VPY-QELDYFIE-EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV--- 151 (993)
Q Consensus 79 ~--~p~-~~~~~~~e-~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~--- 151 (993)
. .|. ......+. .++.... -..+++|+|+||..|. .|-|++ .+.|....-. -....
T Consensus 217 ~~~~~~~~~~~~~v~s~eea~~~-a~~iGyPvVVKp~~Gg-----------GGkGv~----iV~s~eEL~~-a~~~a~~~ 279 (587)
T 3jrx_A 217 RISVPEDVYDKGCVKDVDEGLEA-AERIGFPLMIKASEGG-----------GGKGIR----KAESAEDFPI-LFRQVQSE 279 (587)
T ss_dssp CCCCCHHHHHTTSCCSHHHHHHH-HHHHCSSEEEEETTCC-----------SSSSEE----EECSTTTHHH-HHHHHHHH
T ss_pred ccccchhhccccccCCHHHHHHH-HHhcCCeEEEEeCCCC-----------CCCCeE----EeCCHHHHHH-HHHHHHhh
Confidence 0 000 00000011 1222221 1346789999999986 333432 2333222111 01011
Q ss_pred ccCcceEEeeccCCCCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeeee-CCHH----HHHHHHHHHHH
Q 001944 152 RREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPN----EKQMAREVCIA 223 (993)
Q Consensus 152 r~~gsyIyEEFi~t~G~DIKVytVG~---~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~-Lt~e----Ek~iA~ka~~a 223 (993)
..++.+|+||||+. ++.|-|-++++ ++++.-.|..- ..+++..--+. .|.. |+++ -.++|.+++++
T Consensus 280 ~~~~~vlVEeyI~g-~rei~V~vl~D~~G~vv~l~~rd~s----iqrr~qk~ie~-aPa~~l~~~~~~~i~~~A~~~a~a 353 (587)
T 3jrx_A 280 IPGSPIFLMKLAQH-ARHLEVQILADQYGNAVSLFGRDCS----IQRRHQKIVEE-APATIAPLAIFEFMEQCAIRLAKT 353 (587)
T ss_dssp STTCCEEEEECCCS-CEEEEEEEEECSSSCEEEEEEEEEE----EESSSCEEEEE-ESCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEecCC-CcEEEEEEEEcCCCCEEEEeeeecc----ccccccceeEe-cCCCCCCHHHHHHHHHHHHHHHHH
Confidence 12678999999964 48899988885 56676666431 12222111111 1333 4543 45789999999
Q ss_pred hCC-ceeEEEEEee-CCCcEEEeccCc
Q 001944 224 FRQ-AVCGFDLLRC-EGRSYVCDVNGW 248 (993)
Q Consensus 224 fgq-~VcGfDLLRs-~g~syV~DVNGw 248 (993)
+|. .+++||++.. +|.+|++|||--
T Consensus 354 lGy~G~~~VEfl~d~dG~~yflEINpR 380 (587)
T 3jrx_A 354 VGYVSAGTVEYLYSQDGSFHFLELNPR 380 (587)
T ss_dssp HTCCEEEEEEEEECSSSCEEEEEEESS
T ss_pred cCCcceeEEEEEEeCCCCEEEEEEeCC
Confidence 998 5888999987 566999999964
No 61
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.78 E-value=3.6e-09 Score=125.65 Aligned_cols=200 Identities=15% Similarity=0.164 Sum_probs=122.8
Q ss_pred CcCEEeecccCCCCh--HHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 001944 15 ICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 91 (993)
Q Consensus 15 ~cD~LIsF~S~GFPL--~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~ 91 (993)
-+|+++.-| ||-- ....+.++..+ +|+-++.+...++.||..+.++|+++|||+|++....-.. .
T Consensus 100 ~~daI~pg~--gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GVpvpp~~~~~~~s----------~ 167 (675)
T 3u9t_A 100 GAQAIHPGY--GFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGEAQD----------L 167 (675)
T ss_dssp TCSEEECCS--STTTTCHHHHHHHHTTTCEESSCCHHHHHHHTSHHHHHHHHHHTTCCBCCCCCSCCCC----------T
T ss_pred CcCEEEeCC--cccccCHHHHHHHHHcCCceeCCCHHHHHHhchHHHHHHHHHHcCcCcCCccccCCCC----------H
Confidence 367777644 4421 23344455554 4556999999999999999999999999999876421100 1
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-------cCcceEEeeccC
Q 001944 92 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFMP 164 (993)
Q Consensus 92 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-------~~gsyIyEEFi~ 164 (993)
++.... -..+++|+|+||..|. .|.|+ +.+.+....-. -....+ .++.+|+||||+
T Consensus 168 ~e~~~~-a~~igyPvvvKp~~G~-----------Gg~Gv----~iv~~~~el~~-a~~~~~~ea~~~fg~~~vlvEeyI~ 230 (675)
T 3u9t_A 168 ETFRRE-AGRIGYPVLLKAAAGG-----------GGKGM----KVVEREAELAE-ALSSAQREAKAAFGDARMLVEKYLL 230 (675)
T ss_dssp THHHHH-HHHSCSSBCCBCCC-----------------C----CCBCCTTTHHH-HHSCCCC--------CCCBCCBCCS
T ss_pred HHHHHH-HHhCCCcEEEEECCCC-----------CCccE----EEECCHHHHHH-HHHHHHHHHHHhcCCCcEEEEeecC
Confidence 122221 1235689999999886 23333 33433322111 111111 156899999998
Q ss_pred CCCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeeee-CCHHH----HHHHHHHHHHhCC-ceeEEEEEe
Q 001944 165 TGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPNE----KQMAREVCIAFRQ-AVCGFDLLR 235 (993)
Q Consensus 165 t~G~DIKVytVG~---~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~-Lt~eE----k~iA~ka~~afgq-~VcGfDLLR 235 (993)
. .+.|-|-++++ ++++...|...+ .|++..-.+. .|.. |+++. .++|.++++++|. .+++||++.
T Consensus 231 g-~reiev~v~~d~~G~vv~l~~rd~s~----qr~~qk~ie~-~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~ 304 (675)
T 3u9t_A 231 K-PRHVEIQVFADRHGHCLYLNERDCSI----QRRHQKVVEE-APAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLL 304 (675)
T ss_dssp S-CBCEEEEEEECSSSCEEEEEEEECCC----BSSSSBCEEE-ESCSSCCHHHHHHHHHHHHHHHHHTTCCSEEEEECCB
T ss_pred C-CcEEEEEEEEcCCCCEEEEeccccce----eeccceEEEE-CCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEE
Confidence 6 26777777753 678887776542 2232221122 2333 66644 5689999999999 689999998
Q ss_pred eC-CCcEEEeccCcc
Q 001944 236 CE-GRSYVCDVNGWS 249 (993)
Q Consensus 236 s~-g~syV~DVNGwS 249 (993)
.. |.+|++|||---
T Consensus 305 ~~dG~~~~iEiNpR~ 319 (675)
T 3u9t_A 305 DERGQFFFMEMNTRL 319 (675)
T ss_dssp CTTSCBCBCEEESSC
T ss_pred cCCCCEEEEeccccc
Confidence 85 459999999654
No 62
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=98.78 E-value=4.8e-09 Score=121.67 Aligned_cols=208 Identities=15% Similarity=0.111 Sum_probs=118.1
Q ss_pred cCEEeecccCCCChH--HHHHHHhhcCCccc-CCcchhhhhhhHHHHHHHHHhCCCCCCCEEE--E--ecc---------
Q 001944 16 CDCLIAFYSSGYPLE--KAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--V--NRE--------- 79 (993)
Q Consensus 16 cD~LIsF~S~GFPL~--KAi~y~~lr~p~~i-Ndl~~q~ll~DR~~v~qiL~~~gIP~P~t~~--~--~r~--------- 79 (993)
||+++.-| ||-.+ ...+.++..+...+ ++..+..++.||..+.++|+++|||+|++.. + ...
T Consensus 124 ~daI~pg~--gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~GVPvp~~~~~~l~~~~~~~~~~~~~~ 201 (540)
T 3glk_A 124 VQAVWAGW--GHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKR 201 (540)
T ss_dssp CSEEECCS--SGGGGCTHHHHHHHHTTCEESSCCHHHHC---CHHHHHHHHHHTTCCBCCBTTTTCCCCCCCTTC----C
T ss_pred CCEEEeCC--CccccCHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccccccccccccccccc
Confidence 56666432 33222 23344555554444 9999999999999999999999999999765 0 000
Q ss_pred --CCCc-ccccccc-ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccccc---c
Q 001944 80 --VPYQ-ELDYFIE-EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV---R 152 (993)
Q Consensus 80 --~p~~-~~~~~~e-~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~---r 152 (993)
.|.. .....+. .++.... -..+++|+|+||..|. .|-| .+.+.+....-. -.... .
T Consensus 202 ~~~~~~~~~~~~v~s~~ea~~~-a~~igyPvVVKp~~gg-----------GG~G----v~iv~~~~eL~~-a~~~~~~~~ 264 (540)
T 3glk_A 202 ISVPEDVYDKGCVKDVDEGLEA-AERIGFPLMIKASEGG-----------GGKG----IRKAESAEDFPI-LFRQVQSEI 264 (540)
T ss_dssp CCCCHHHHHHTSCCSHHHHHHH-HHHHCSSEEEEETTCC-------------------EEEECSTTTHHH-HHHHHHHHS
T ss_pred cccccccccccCcCCHHHHHHH-HHhcCCcEEEEECCCC-----------CCCC----EEEECCHHHHHH-HHHHHHhhc
Confidence 0000 0000011 1222221 1246789999999885 2222 233443322111 01111 1
Q ss_pred cCcceEEeeccCCCCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeeee-CCH----HHHHHHHHHHHHh
Q 001944 153 REGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTP----NEKQMAREVCIAF 224 (993)
Q Consensus 153 ~~gsyIyEEFi~t~G~DIKVytVG~---~~vhAe~RKSP~vDG~vrrN~~gke~r~~v~-Lt~----eEk~iA~ka~~af 224 (993)
.++.+|+||||+- ++.+-|-++++ ++++.-.|..- ..+++..--+. .|.. |++ +-.++|.++++++
T Consensus 265 ~~~~vlVEe~I~g-~rei~V~vl~d~~G~vv~l~~rd~s----~qr~~~k~ie~-~Pa~~l~~~~~~~l~~~a~~~~~al 338 (540)
T 3glk_A 265 PGSPIFLMKLAQH-ARHLEVQILADQYGNAVSLFGRDCS----IQRRHQKIVEE-APATIAPLAIFEFMEQCAIRLAKTV 338 (540)
T ss_dssp TTCCEEEEECCSS-EEEEEEEEEECTTSCEEEEEEEEEE----EC---CCSEEE-ESCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEecCC-CcEEEEEEEEcCCCCEEEEeceeee----eeecccceEEe-cCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 2678999999953 48899988875 56776666431 12222211111 2333 454 3457899999999
Q ss_pred CC-ceeEEEEEee-CCCcEEEeccCc
Q 001944 225 RQ-AVCGFDLLRC-EGRSYVCDVNGW 248 (993)
Q Consensus 225 gq-~VcGfDLLRs-~g~syV~DVNGw 248 (993)
|. .+++||++.. +|.+|++|||--
T Consensus 339 G~~G~~~VEf~~d~dg~~~~lEiNpR 364 (540)
T 3glk_A 339 GYVSAGTVEYLYSQDGSFHFLELNPR 364 (540)
T ss_dssp TCCEEEEEEEEEETTSCEEEEEEECS
T ss_pred CCccceEEEEEEcCCCCEEEEEEECC
Confidence 98 5889999987 556999999964
No 63
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.78 E-value=2.1e-08 Score=125.48 Aligned_cols=195 Identities=18% Similarity=0.236 Sum_probs=97.0
Q ss_pred cCEEeecccCCCChH--HHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCcccccccc
Q 001944 16 CDCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIE 90 (993)
Q Consensus 16 cD~LIsF~S~GFPL~--KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~e 90 (993)
+|+++.-| ||--+ ...+.++..+ ||+-++.+...++.||..+.++|+++|||+|++. .+..
T Consensus 94 iD~V~pg~--g~lsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GIPvp~~~~~~v~s------------ 159 (1165)
T 2qf7_A 94 ADAIHPGY--GLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDD------------ 159 (1165)
T ss_dssp CSEEECCS--STTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC---------------------
T ss_pred CCEEEECC--CchhcCHHHHHHHHHcCCceECCCHHHHHHHCCHHHHHHHHHHcCCCCCCeeCcCCCC------------
Confidence 78888754 44321 2344555555 4667999999999999999999999999999987 3432
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-------cCcceEEeecc
Q 001944 91 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFM 163 (993)
Q Consensus 91 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-------~~gsyIyEEFi 163 (993)
.++.... -..+++|+|+||..|. .|-|++ +.+....-...+. ... .++.+++||||
T Consensus 160 ~eea~~~-a~~igyPvVVKp~~g~-----------GG~Gv~-iv~s~eEL~~a~~----~~~~~a~~~fg~~~vlVEefI 222 (1165)
T 2qf7_A 160 MAEVAKM-AAAIGYPVMLKASWGG-----------GGRGMR-VIRSEADLAKEVT----EAKREAMAAFGKDEVYLEKLV 222 (1165)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred HHHHHHH-HHhcCCCEEEEeCCCC-----------CCCCEE-EECCHHHHHHHHH----HHHHHHHhhcCCCcEEEEEec
Confidence 1122221 1245689999999986 343542 3332221111121 111 24679999999
Q ss_pred CCCCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCc-eeeee-eCCHHH----HHHHHHHHHHhCCc-eeEEEE
Q 001944 164 PTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKE-VRYPV-LLTPNE----KQMAREVCIAFRQA-VCGFDL 233 (993)
Q Consensus 164 ~t~G~DIKVytVG~---~~vhAe~RKSP~vDG~vrrN~~gke-~r~~v-~Lt~eE----k~iA~ka~~afgq~-VcGfDL 233 (993)
+. |+.+.|.++++ .+++...|.. .+.|+. ++- ...|. .|+++. .++|.++++++|.. +++||+
T Consensus 223 ~g-g~EisV~vl~D~~G~vv~l~~r~~-----s~~r~~-~~~~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf 295 (1165)
T 2qf7_A 223 ER-ARHVESQILGDTHGNVVHLFERDC-----SVQRRN-QKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEY 295 (1165)
T ss_dssp SS-EEEEEEEEEECTTSCEEEEEEEEE-----EEEETT-EEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cC-CcEEEEEEEEcCCCcEEEEEeecc-----cceecc-cceEEecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEEE
Confidence 75 78899988875 3677666633 233332 221 12233 467643 57999999999986 678999
Q ss_pred Eee-C-CCcEEEeccCc
Q 001944 234 LRC-E-GRSYVCDVNGW 248 (993)
Q Consensus 234 LRs-~-g~syV~DVNGw 248 (993)
+.. . |++||+|||--
T Consensus 296 ~vd~~dg~~~~iEiNpR 312 (1165)
T 2qf7_A 296 LMDADTGKFYFIEVNPR 312 (1165)
T ss_dssp EEETTTTEEEEEEEECS
T ss_pred EEECCCCCEEEEEEEcC
Confidence 998 5 56999999953
No 64
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=98.73 E-value=3e-08 Score=124.68 Aligned_cols=199 Identities=16% Similarity=0.206 Sum_probs=92.6
Q ss_pred cCEEeecccCCCCh--HHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCE-EEEeccCCCccccccccc
Q 001944 16 CDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRY-ALVNREVPYQELDYFIEE 91 (993)
Q Consensus 16 cD~LIsF~S~GFPL--~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t-~~~~r~~p~~~~~~~~e~ 91 (993)
||.++.-| ||=- ....+.++..+ ||+-++.+...++.||..+.++|+++|||+|+. ..+.. .
T Consensus 104 iDaI~pg~--g~lsEn~~~a~~le~~Gi~~iGps~eai~~~~DK~~ak~ll~~aGIPvpp~~~~v~s------------~ 169 (1236)
T 3va7_A 104 AQAIIPGY--GFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSGLIKD------------A 169 (1236)
T ss_dssp CSEEECCS--SGGGGCHHHHHHHHTTTCEESSCCHHHHHHHHSTTHHHHHHHHTTCCCCC--------------------
T ss_pred CCEEEECC--ccccccHHHHHHHHHCCCCeeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEecCC------------H
Confidence 78888765 5422 23334455555 445599999999999999999999999999884 33332 1
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCccccccccc---ccccCcceEEeeccCCCCc
Q 001944 92 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGGT 168 (993)
Q Consensus 92 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~---~~r~~gsyIyEEFi~t~G~ 168 (993)
++.... -..+++|+|+||..|. .|-|++ +.+....-...+..-.. ....++.+|+||||+- ++
T Consensus 170 eea~~~-a~~iGyPvVVKP~~Gg-----------GGkGV~-iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G-~r 235 (1236)
T 3va7_A 170 KEAKEV-AKKLEYPVMVKSTAGG-----------GGIGLQ-KVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN-AR 235 (1236)
T ss_dssp ----------------------------------------------------------------------------C-CE
T ss_pred HHHHHH-HHHcCCCEEEEeCCCC-----------CCCCEE-EECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC-Ce
Confidence 222221 1345689999999886 344553 44333222222221000 0013567999999975 58
Q ss_pred eeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeee-eCCHH----HHHHHHHHHHHhCCc-eeEEEEEeeC--
Q 001944 169 DVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTPN----EKQMAREVCIAFRQA-VCGFDLLRCE-- 237 (993)
Q Consensus 169 DIKVytVG~---~~vhAe~RKSP~vDG~vrrN~~gke~r~~v-~Lt~e----Ek~iA~ka~~afgq~-VcGfDLLRs~-- 237 (993)
.+-|.++++ .+++.-.|..- ..+++..-.+. .|. .|+++ -.++|.++++++|.. +++||++...
T Consensus 236 EisV~vl~Dg~g~vv~l~~rd~s----~qr~~~k~~e~-~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~ 310 (1236)
T 3va7_A 236 HVEIQMMGDGFGKAIAIGERDCS----LQRRNQKVIEE-TPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQR 310 (1236)
T ss_dssp EEEEEEEEESSSCEEEEEEEEEE----EEETTEEEEEE-ESCSSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTT
T ss_pred EEEEEEEecCCceEEEEeeeeee----eeecCcceEEE-cCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCC
Confidence 888888864 45665555321 12222111111 243 36664 457889999999985 9999999984
Q ss_pred CCcEEEeccC
Q 001944 238 GRSYVCDVNG 247 (993)
Q Consensus 238 g~syV~DVNG 247 (993)
+++||+|||-
T Consensus 311 g~~y~iEINp 320 (1236)
T 3va7_A 311 DEFYFLEVNA 320 (1236)
T ss_dssp TEEEEEEEEC
T ss_pred CcEEEEEEEC
Confidence 6899999995
No 65
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.71 E-value=5.2e-08 Score=121.91 Aligned_cols=195 Identities=21% Similarity=0.222 Sum_probs=119.8
Q ss_pred CcCEEeecc---cCCCChHHHHHHHhhcC-CcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCcccccc
Q 001944 15 ICDCLIAFY---SSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYF 88 (993)
Q Consensus 15 ~cD~LIsF~---S~GFPL~KAi~y~~lr~-p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~ 88 (993)
.||+++.-| |.- ....+.++..+ ||+-++.+...++.||..+.++|+++|||+|++. .+..
T Consensus 77 ~~DaI~pg~gflsE~---~~~a~~le~~Gi~~iGp~~eai~~~~DK~~~r~ll~~aGIPvpp~~~~~v~s---------- 143 (1150)
T 3hbl_A 77 NVDAIHPGYGFLSEN---EQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKS---------- 143 (1150)
T ss_dssp TCSEEECTTTTSTTC---HHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSCBCS----------
T ss_pred CCCEEEECCCccccc---HHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCccccCCCC----------
Confidence 378887643 222 13344555555 4556999999999999999999999999999987 3332
Q ss_pred ccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccccccccc-------cCcceEEee
Q 001944 89 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEE 161 (993)
Q Consensus 89 ~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r-------~~gsyIyEE 161 (993)
.++... --..+++|+|+||..|. .|-|+ +.+.+....-. -....+ .++.+|+||
T Consensus 144 --~eea~~-~a~~iGyPvVVKP~~Gg-----------Gg~Gv----~vv~s~eeL~~-a~~~a~~~a~~~fg~~~vlVEe 204 (1150)
T 3hbl_A 144 --YELAKE-FAEEAGFPLMIKATSGG-----------GGKGM----RIVREESELED-AFHRAKSEAEKSFGNSEVYIER 204 (1150)
T ss_dssp --SSTTTT-TGGGTCSSEEEECCC----------------------CEECCSSSCTH-HHHSSSSSCC------CBEEEC
T ss_pred --HHHHHH-HHHHcCCCEEEEeCCCC-----------CCCCE----EEECCHHHHHH-HHHHHHHHHHhhcCCCcEEEEE
Confidence 111111 11235689999999886 22233 33444332211 111111 157899999
Q ss_pred ccCCCCceeEEEEECC---ceeEEEeeeCCCCCCeeeec-CCCCceeeee-eCCH----HHHHHHHHHHHHhCCc-eeEE
Q 001944 162 FMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRN-PDGKEVRYPV-LLTP----NEKQMAREVCIAFRQA-VCGF 231 (993)
Q Consensus 162 Fi~t~G~DIKVytVG~---~~vhAe~RKSP~vDG~vrrN-~~gke~r~~v-~Lt~----eEk~iA~ka~~afgq~-VcGf 231 (993)
||+- .+.+-|-++|+ .++|...|... +.|+ ....+. .|. .|++ +-.++|.++++++|.. ++.|
T Consensus 205 yI~G-~reieV~vl~d~~G~vv~l~er~~s-----~qr~~~k~~e~-~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~v 277 (1150)
T 3hbl_A 205 YIDN-PKHIEVQVIGDEHGNIVHLFERDCS-----VQRRHQKVVEV-APSVGLSPTLRQRICDAAIQLMENIKYVNAGTV 277 (1150)
T ss_dssp CCSS-CEEEEEEEEECSSSCEEEEEEEEEE-----EESSSCEEEEE-SSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCC-CcEEEEEEEEeCCCCEEEEEeeccc-----eeccCceeEEe-cCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEE
Confidence 9974 36777777754 56777666442 3222 111122 233 4666 4467899999999964 5669
Q ss_pred EEEeeCCCcEEEeccCc
Q 001944 232 DLLRCEGRSYVCDVNGW 248 (993)
Q Consensus 232 DLLRs~g~syV~DVNGw 248 (993)
|++...+++|++|||--
T Consensus 278 Eflvd~d~~y~iEINpR 294 (1150)
T 3hbl_A 278 EFLVSGDEFFFIEVNPR 294 (1150)
T ss_dssp EEEEETTEEEEEEEECS
T ss_pred EEEEECCeEEEEEEeCC
Confidence 99998889999999954
No 66
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=98.44 E-value=9.4e-07 Score=96.71 Aligned_cols=166 Identities=16% Similarity=0.130 Sum_probs=88.0
Q ss_pred cCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcce
Q 001944 39 RKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSI 118 (993)
Q Consensus 39 r~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni 118 (993)
.+..+.-+..+.....||..-.+.|+++|||+|++.- +. +. .++.|+|+||..|.
T Consensus 82 ~~~p~~p~~~~l~~~~dr~~~~~~l~~~Gip~P~~~~-----~e----------e~------~i~~PviVKp~~g~---- 136 (320)
T 2pbz_A 82 AKARFFGNRRFLKWETTFELQDKALEGAGIPRVEVVE-----PE----------DA------KPDELYFVRIEGPR---- 136 (320)
T ss_dssp CCSCCBSCSSGGGGGSCHHHHHHHHHHHTCCBCCBCC-----SC----------CC------CSSCCEEEECC-------
T ss_pred cCCCcCCCHHHHHHHHhHHHHHHHHHHCCcCCCCeeC-----Hh----------Hc------CcCCcEEEEECCCC----
Confidence 3334555677788899998888999999999998871 21 11 25689999999997
Q ss_pred eEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC-CCceeEEEEE--CCceeEEEeeeCCCCCCeee
Q 001944 119 MIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVKVYTV--GPEYAHAEARKSPVVDGVVM 195 (993)
Q Consensus 119 ~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t-~G~DIKVytV--G~~~vhAe~RKSP~vDG~vr 195 (993)
.|-|.. + +.| .++....... .+.+|+||||+. .......|-+ |.-.+-...++--..||..+
T Consensus 137 -------ggkG~~-~---v~~--eel~~~~~~~--~~~~IiEEfI~g~~~~~~~f~~~~~g~~e~~~~~~r~e~~~g~~~ 201 (320)
T 2pbz_A 137 -------GGSGHF-I---VEG--SELEERLSTL--EEPYRVERFIPGVYLYVHFFYSPILERLELLGVDERVLIADGNAR 201 (320)
T ss_dssp --------------------C--EECSCCCC------CCEEEECCCSCEEEEEEEEETTTTEEEEEEEEEEEETTCSSSS
T ss_pred -------CCCCEE-E---ECh--HHHHHHHHhc--CCCEEEEeeeceEecceeEEeccccCceeEEEecceEEEECCeee
Confidence 233432 3 333 3333211111 267999999984 2211111111 00000111111111355543
Q ss_pred ecCCCCceee------eeeCC----HHHHHHHHHHHHHhC-------CceeEEEEEeeCCCcEEEeccC
Q 001944 196 RNPDGKEVRY------PVLLT----PNEKQMAREVCIAFR-------QAVCGFDLLRCEGRSYVCDVNG 247 (993)
Q Consensus 196 rN~~gke~r~------~v~Lt----~eEk~iA~ka~~afg-------q~VcGfDLLRs~g~syV~DVNG 247 (993)
-. +....| |..++ ++-.++|.+++.+++ ..+.++| +..+++.||+|||.
T Consensus 202 ~p--~~~~~~~~~G~~P~~~~~~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE-~~~dg~~~v~EIap 267 (320)
T 2pbz_A 202 WP--VKPLPYTIVGNRAIALRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALH-FAYDGSFKAIGIAS 267 (320)
T ss_dssp SC--CSCCCCCEEEEEECEECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE-EECSSSCEEEEEES
T ss_pred cc--cCCCceeeecCCCCccCHHHHHHHHHHHHHHHHHHHhhccCCceeeEEEE-EcCCCcEEEEEecC
Confidence 30 001111 44444 566789999999983 4567889 55567899999984
No 67
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP: c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A* 2l3h_A 2l77_A 2l79_A
Probab=98.23 E-value=6.2e-05 Score=81.05 Aligned_cols=83 Identities=13% Similarity=0.248 Sum_probs=57.5
Q ss_pred eeEEEeecchhHHHHHHHHHhcCCcccccccchhhhhhhhhhhcCCCCCcccccceEEEEecCCCCCCCCCeeEEEEEec
Q 001944 818 RTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENTAVALEDPKRFRIELTFS 897 (993)
Q Consensus 818 RtrlYFTsESHIhsLLNvlr~~~l~~~~~~e~~~i~~~a~~~l~~i~ELdYlSqIvf~lYE~~~~~~~~~~rf~Iei~~S 897 (993)
+-.+||+-.+-|-+||..| |+.. ..+| .|-+.|+||||.+. ..+.||+.+-
T Consensus 250 k~~~~~~HD~ti~~ll~aL---g~~~-----------------~~~p--p~as~i~fEl~~~~-------~~~~Vr~~~n 300 (354)
T 1nd6_A 250 KLIMYSAHDTTVSGLQMAL---DVYN-----------------GLLP--PYASCHLTELYFEK-------GEYFVEMYYR 300 (354)
T ss_dssp SEEEEEECHHHHHHHHHHT---TCCC-----------------SSCC--CTTCEEEEEEEEET-------TEEEEEEEEE
T ss_pred cEEEEEecHHHHHHHHHHc---CCCC-----------------CCCC--chhhheeeEEEecC-------CceEEEEEEe
Confidence 5799999999999988887 3321 1234 58899999999642 4688999997
Q ss_pred CCCCCCCCCcCCCccCCCCCCcccccCCCccccccCCcccHHHHHHhhccCC
Q 001944 898 RGADLSPLEKNDSEASSLHQEHTLPIMGPERLQEVGSYLTLEKMEKMIRPFA 949 (993)
Q Consensus 898 pG~~~~pl~~~~~~~~~ld~~H~l~~~pr~~L~~~~~~l~l~~~~~~~~~~~ 949 (993)
-+....|.. +++ -+|. ...+|+++.+.++.+.
T Consensus 301 ~~~~~~~~~------~~l-----~gC~---------~~Cpl~~F~~~~~~~~ 332 (354)
T 1nd6_A 301 NETQHEPYP------LML-----PGCS---------PSCPLERFAELVGPVI 332 (354)
T ss_dssp CCTTSCCEE------CCC-----TTSC---------SEEEHHHHHHHHGGGS
T ss_pred CCCCCCcee------eeC-----CCCC---------CCCCHHHHHHHHHhcC
Confidence 654332221 222 1342 4788999999999886
No 68
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella tularensis subsp} PDB: 4e3w_A 2glc_A 2glb_A 2gla_A 3it0_A* 3it1_A* 3it2_A 2p36_A*
Probab=98.08 E-value=4.5e-05 Score=83.54 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=40.3
Q ss_pred hhHHHhhc--cCCCCcchhhhhhcc-cccceEeecCCchHHHHHHHHHHhhccCCC
Q 001944 454 NEIAYWWG--SHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 506 (993)
Q Consensus 454 e~LG~~fR--Yp~~~~gLLrLhst~-rhDlKIysSdEgRVq~TAaaFakg~L~leg 506 (993)
..||+.+| |-.. .||| ..+| ..++.++||+..|+++||++|+.||..-.+
T Consensus 49 ~~lG~~lr~~Yv~~-~~~l--~~~~~~~~v~~rst~~~Rt~~Sa~~~l~Gl~p~~~ 101 (342)
T 3it3_A 49 YNLGLQLRKRYIDK-FGLL--PEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGT 101 (342)
T ss_dssp HHHHHHHHHHHTTT-SCSS--CSSCCTTSEEEEECSSHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHhhc-cccc--cccccCceEEEEECCChHHHHHHHHHHHHhCCCCC
Confidence 57999999 8422 2553 4444 689999999999999999999999998765
No 69
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=97.81 E-value=5.6e-05 Score=83.86 Aligned_cols=178 Identities=15% Similarity=0.119 Sum_probs=91.7
Q ss_pred hcCCcccCCcchhhhhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc-Cc
Q 001944 38 LRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DH 116 (993)
Q Consensus 38 lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge-dH 116 (993)
..+..+.-+-.+..+..||....+.|+++|||||++ +.. + ++. ..|+|+||..+. -+
T Consensus 107 ~~g~~v~g~~~a~~~e~~k~~~k~~l~~~GIptp~~--~~~--~----------~e~--------~~PvVVK~~~~a~Gk 164 (361)
T 2r7k_A 107 SFLVPMFGNRRILRWESERSLEGKLLREAGLRVPKK--YES--P----------EDI--------DGTVIVKFPGARGGR 164 (361)
T ss_dssp TCCSCBBSCGGGGGTTTCHHHHHHHHHHTTCCCCCE--ESS--G----------GGC--------CSCEEEECSCCCC--
T ss_pred HcCCCcCCCHHHHHHhhhHHHHHHHHHHcCcCCCCE--eCC--H----------HHc--------CCCEEEeeCCCCCCC
Confidence 344334445566667888988889999999999985 221 1 111 269999999875 23
Q ss_pred ceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCC-CCceeEEEEE-CCc-eeEEEeee--CCCCC
Q 001944 117 SIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVKVYTV-GPE-YAHAEARK--SPVVD 191 (993)
Q Consensus 117 ni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t-~G~DIKVytV-G~~-~vhAe~RK--SP~vD 191 (993)
+++|--.... ....++.+-.. ..+. -.+++.+|.||||.. .......|-+ +++ -+-.+.++ +. .|
T Consensus 165 Gv~v~~s~ee---~~~a~~~~~~~-~~~~-----~~~~~~viIEEfl~G~e~s~~~f~~~~~~~~e~~~id~r~~~~-~d 234 (361)
T 2r7k_A 165 GYFIASSTEE---FYKKAEDLKKR-GILT-----DEDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESN-ID 234 (361)
T ss_dssp -EEEESSHHH---HHHHHHHHHHT-TSCC-----HHHHHHCEEEECCCSEEEEEEEEEETTTTEEEEEEEEEEEEEE-HH
T ss_pred CEEEECCHHH---HHHHHHHHHhc-cccc-----cCCCCeEEEEeccceEEeeEEEEecccCCeeEEEEecceEEee-cc
Confidence 3333322111 11111111000 0000 011246899999984 2111112221 110 11112222 11 12
Q ss_pred Ceee----ec-CCCCceee------eeeCC----HHHHHHHHHHHHHhC-------CceeEEEEEeeC-CCcEEEeccC
Q 001944 192 GVVM----RN-PDGKEVRY------PVLLT----PNEKQMAREVCIAFR-------QAVCGFDLLRCE-GRSYVCDVNG 247 (993)
Q Consensus 192 G~vr----rN-~~gke~r~------~v~Lt----~eEk~iA~ka~~afg-------q~VcGfDLLRs~-g~syV~DVNG 247 (993)
|..+ .. ..+.+-.+ |..++ ++-.++|.+++.++| ..+.++++.-+. |+.||+|||.
T Consensus 235 gi~~~~~~~~~~~~~~p~~v~~G~~Pa~l~~~~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~dg~i~V~EIap 313 (361)
T 2r7k_A 235 GLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNENLELVVFEMSA 313 (361)
T ss_dssp HHTTSCHHHHHTCCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECTTSCEEEEEEES
T ss_pred cceecchhhhhcccCCCceEEecCcCCcCCHHHHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcCCCCEEEEEEcC
Confidence 2221 00 01111112 55555 566789999999983 667789998775 5689999994
No 70
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=5e-07 Score=80.86 Aligned_cols=96 Identities=16% Similarity=0.167 Sum_probs=56.6
Q ss_pred hhhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCC
Q 001944 51 HLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGG 128 (993)
Q Consensus 51 ~ll~DR~~v~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~Gg 128 (993)
.+++||..+.++|+++|||+|++. .+.. .++.... ...+++|+|+||.+|. .|-
T Consensus 4 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~------------~~~~~~~-~~~~~~P~vvKp~~~~-----------~~~ 59 (108)
T 2cqy_A 4 GSSGDKIESKLLAKKAEVNTIPGFDGVVKD------------AEEAVRI-AREIGYPVMIKASAGG-----------GGK 59 (108)
T ss_dssp CCCCCCCCSTTCCCSSCCCCCSCCCSCBSS------------HHHHHHH-HHHHCSSEEEEETTSC-----------CTT
T ss_pred hhhcCHHHHHHHHHHcCCCCCCCcccccCC------------HHHHHHH-HHhcCCCEEEEECCCC-----------CCc
Confidence 467889999999999999999987 5433 1122211 1235689999999985 222
Q ss_pred hHHHHHhhcCCCccccccccccc------c-cCcceEEeeccCCCCceeEEEEEC
Q 001944 129 GMKELFRKVGNRSSEFHPDVRRV------R-REGSYIYEEFMPTGGTDVKVYTVG 176 (993)
Q Consensus 129 G~~rLfrkign~sS~~~p~~~~~------r-~~gsyIyEEFi~t~G~DIKVytVG 176 (993)
|+. .+.|... +..-.... . .+..+|+||||+- ..++.|-+||
T Consensus 60 gv~----~v~~~~e-l~~~~~~~~~~~~~~~~~~~~lvee~i~g-~~E~~v~v~g 108 (108)
T 2cqy_A 60 GMR----IAWDDEE-TRDGFRLSSQEAASSFGDDRLLIEKFIDN-PRHISGPSSG 108 (108)
T ss_dssp TCE----EESSHHH-HHHHHHHHHHHHHHHTSSCCEEEEECCSS-SSCCCSCCCC
T ss_pred cEE----EeCCHHH-HHHHHHHHHHHHHhhcCCCcEEEeeccCC-CcEEEEEecC
Confidence 221 1211111 00000000 0 1467999999974 3577777766
No 71
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP; 2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A* 1dkm_A 1dkn_A 1dko_A 1dkl_A
Probab=97.13 E-value=0.00053 Score=76.57 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=40.6
Q ss_pred cch--hhHHHhhc--cCCCCcchhhhhhcc---cccceEeecCCchHHHHHHHHHHhhccC
Q 001944 451 NGV--NEIAYWWG--SHSEGTGLLRLHSTY---RHDLKIYSSDEGRVQMSAAAFAKGLLDL 504 (993)
Q Consensus 451 GGE--e~LG~~fR--Yp~~~~gLLrLhst~---rhDlKIysSdEgRVq~TAaaFakg~L~l 504 (993)
|.+ -.||+.+| |.. .|| |...| .+++.|+||+--|+.+||++|+.||.--
T Consensus 51 G~~~~~~lG~~lr~ry~~--~~l--l~~~~~p~~~~v~v~st~~~RT~~SA~~~l~GlfP~ 107 (410)
T 1dkq_A 51 GGELIAYLGHYQRQRLVA--DGL--LAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPD 107 (410)
T ss_dssp HHHHHHHHHHHHHHHHHH--TTS--SCSSSCCCTTTEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHh--cCC--CccccCCCcceEEEEeCCcHHHHHHHHHHHhhcCCC
Confidence 444 68999999 842 356 56666 4789999999999999999999999754
No 72
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=97.00 E-value=2.3e-05 Score=81.01 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=60.2
Q ss_pred hhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChH
Q 001944 52 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGM 130 (993)
Q Consensus 52 ll~DR~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~ 130 (993)
...|+..+.++|+++|||+|++.++... ++.... ...+++|+|+||.++. -| .+.|||+
T Consensus 18 ~~l~k~~~k~ll~~~GIp~p~~~~~~~~------------~ea~~~-a~~lg~PvvvKp~~~~~~~-------r~~~gGv 77 (238)
T 1wr2_A 18 TAMVEYEAKQVLKAYGLPVPEEKLAKTL------------DEALEY-AKEIGYPVVLKLMSPQILH-------KSDAKVV 77 (238)
T ss_dssp CEECHHHHHHHHHTTTCCCCCCEEESSH------------HHHHHH-HHHHCSSEEEEEECTTCCC-------HHHHTCE
T ss_pred CCCCHHHHHHHHHHcCcCCCCeEEeCCH------------HHHHHH-HHHhCCCEEEEEccCCCCc-------CCccCCE
Confidence 3468999999999999999999988551 122221 1245689999999982 11 1134454
Q ss_pred HHHHhhcCCCccccccccccc----------ccCcceEEeeccCCCCceeEEEEECCc
Q 001944 131 KELFRKVGNRSSEFHPDVRRV----------RREGSYIYEEFMPTGGTDVKVYTVGPE 178 (993)
Q Consensus 131 ~rLfrkign~sS~~~p~~~~~----------r~~gsyIyEEFi~t~G~DIKVytVG~~ 178 (993)
. + .+.|....-. -.... .....+|+|||++ .|+.+-|-++++.
T Consensus 78 ~-~--~v~~~~el~~-a~~~~~~~~~~~~~~~~~~~vlVEe~i~-~g~E~~v~v~~d~ 130 (238)
T 1wr2_A 78 M-L--NIKNEEELKK-KWEEIHENAKKYRPDAEILGVLVAPMLK-PGREVIIGVTEDP 130 (238)
T ss_dssp E-E--EECSHHHHHH-HHHHHHHHHHHHCTTCCCCEEEEEECCC-CCEEEEEEEEEET
T ss_pred E-E--eCCCHHHHHH-HHHHHHHhhhhhCCCCccceEEEEECCC-CCeEEEEEEEeCC
Confidence 3 2 1222111100 00000 0135799999998 4677766666544
No 73
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase, phytate binding site, hydrolase; HET: IHP; 1.88A {Enterobacter cloacae} PDB: 1nt4_A*
Probab=96.95 E-value=0.0045 Score=69.63 Aligned_cols=49 Identities=12% Similarity=0.136 Sum_probs=38.3
Q ss_pred hhHHHhhc--cCCCCcchhhhhhc--c-cccceEeecCCchHHHHHHHHHHhhccCCC
Q 001944 454 NEIAYWWG--SHSEGTGLLRLHST--Y-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 506 (993)
Q Consensus 454 e~LG~~fR--Yp~~~~gLLrLhst--~-rhDlKIysSdEgRVq~TAaaFakg~L~leg 506 (993)
-.||+.+| |.. .||| ... | ..++.|+||+--|+++||++|+.||.--.|
T Consensus 56 ~~lG~~lr~rY~~--~~ll--~~~~~~~~~~v~vrst~~~Rt~~SA~~fl~Gl~P~~~ 109 (398)
T 3ntl_A 56 VYMGHYMREWLAQ--QGMV--KTGECPAADSVYAYANSLQRTVATAQFFITGAFPGCD 109 (398)
T ss_dssp HHHHHHHHHHHHH--TTSS--CTTSCCCTTSEEEEECSSHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHhh--cCCC--ccccCCCcCeEEEEECCchHHHHHHHHHHHHhCCCCC
Confidence 57999999 821 2553 332 3 378999999999999999999999987554
No 74
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=93.59 E-value=0.12 Score=61.40 Aligned_cols=115 Identities=15% Similarity=0.158 Sum_probs=72.2
Q ss_pred HHHhhcCCcccCCcchhhhhhhHHHHHHHHHhCCCC-CC---CEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 001944 34 SYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIP-VP---RYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 109 (993)
Q Consensus 34 ~y~~lr~p~~iNdl~~q~ll~DR~~v~qiL~~~gIP-~P---~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 109 (993)
+++...+..+||.+.++- +.+|...--+.+.. | +| .|.+ .++.+ +. ...+|.|
T Consensus 477 ~~l~~~~v~iieP~~~~l-lsNKailalLw~l~--p~hp~LLpT~f-------------~~~~~-l~------~~~yV~K 533 (619)
T 2io8_A 477 DVLLRPEVLVFEPLWTVI-PGNKAILPILWSLF--PHHRYLLDTDF-------------TVNDE-LV------KTGYAVK 533 (619)
T ss_dssp HHHTCTTCEEESCGGGGT-TTSTTHHHHHHHHS--TTCTTCCCEES-------------SCCHH-HH------HHCEEEE
T ss_pred HHHHhCCCEEECHHHHHH-hhhHHHHHHHHHhC--CCCCCCCCeee-------------cCCcc-cc------cCCEEEc
Confidence 334556678999998855 77875543344433 3 44 3331 11111 11 1359999
Q ss_pred eccc-cCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCCCce-----eEEEEECCceeEEE
Q 001944 110 PVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD-----VKVYTVGPEYAHAE 183 (993)
Q Consensus 110 pv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~G~D-----IKVytVG~~~vhAe 183 (993)
|+.| +-.||.|+-+ .| .. +.+... .. .+..||||||++-...| |-+|+||++++.+.
T Consensus 534 Pi~gReG~nV~i~~~--~~--~~-----~~~~~~-------~y-~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~ 596 (619)
T 2io8_A 534 PIAGRCGSNIDLVSH--HE--EV-----LDKTSG-------KF-AEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTC 596 (619)
T ss_dssp ETTCCTTTTCEEECT--TS--CE-----EEECCC-------TT-TTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEE
T ss_pred cCCCCCCCCEEEEeC--CC--hh-----Hhhccc-------cc-cCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEE
Confidence 9999 6666666643 11 10 000001 11 35779999999988789 99999999999999
Q ss_pred eeeCC
Q 001944 184 ARKSP 188 (993)
Q Consensus 184 ~RKSP 188 (993)
.|.++
T Consensus 597 ~R~~~ 601 (619)
T 2io8_A 597 LRGDE 601 (619)
T ss_dssp EEEES
T ss_pred EecCC
Confidence 99973
No 75
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=90.22 E-value=0.37 Score=54.06 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCc-EEEeeccc
Q 001944 56 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKP-FVEKPVHG 113 (993)
Q Consensus 56 R~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kP-fVeKpv~G 113 (993)
...+-++|+++|||+|+..++... ++.... -..++.| +|+||..+
T Consensus 5 E~~aK~lL~~~GIpvp~~~~~~s~------------eea~~a-a~~lG~P~vVvK~~~~ 50 (388)
T 2nu8_B 5 EYQAKQLFARYGLPAPVGYACTTP------------REAEEA-ASKIGAGPWVVKCQVH 50 (388)
T ss_dssp HHHHHHHHHHTTCCCCCEEEESSH------------HHHHHH-HHHHCSSCEEEEECCS
T ss_pred HHHHHHHHHHCCcCCCCeeEECCH------------HHHHHH-HHHhCCCeEEEEEecC
Confidence 456788999999999999988651 122221 1235689 99999874
No 76
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=90.22 E-value=0.061 Score=60.54 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccC-cEEEeec
Q 001944 57 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWK-PFVEKPV 111 (993)
Q Consensus 57 ~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~k-PfVeKpv 111 (993)
..+-++|+++|||+|+..++... ++.... -..++. |+|+||.
T Consensus 6 ~~aK~lL~~~GIpvp~~~~~~s~------------~ea~~~-a~~lg~~PvVvK~~ 48 (395)
T 2fp4_B 6 YQSKKLMSDNGVKVQRFFVADTA------------NEALEA-AKRLNAKEIVLKAQ 48 (395)
T ss_dssp HHHHHHHHHTTCCCCCEEEESSH------------HHHHHH-HHHHTCSSEEEEEC
T ss_pred HHHHHHHHHCCcCCCCeEEECCH------------HHHHHH-HHHcCCCcEEEEEe
Confidence 45778999999999999988551 222221 123567 8999995
No 77
>2gfi_A Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces castellii}
Probab=89.88 E-value=0.26 Score=55.88 Aligned_cols=56 Identities=18% Similarity=0.325 Sum_probs=41.5
Q ss_pred hhHHHhhc--cCCCCcchhhhhhcccccceEeecCCchHHHHHHHHHHhhccCCCCCCcceeeeEe
Q 001944 454 NEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVS 517 (993)
Q Consensus 454 e~LG~~fR--Yp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~legeLtPilv~lV~ 517 (993)
.+||+.|| |+ +|+ .. ...+.|+||+-.||.+||++|+.||........|+-+..+.
T Consensus 138 ~~lG~~lr~rY~----~ll--~~--~~~v~vrST~~~Rti~SA~~fl~Glfp~~~~~~~~~~~ii~ 195 (458)
T 2gfi_A 138 MKHGIAFRTKYG----ELF--DT--NDTLPVFTSNSGRVYQTSQYFARGFMGDDFSNDTVKTNIIS 195 (458)
T ss_dssp HHHHHHHHHHHG----GGC--CT--TSCEEEEEESBHHHHHHHHHHHHHHHGGGCSTTTEEEEEEC
T ss_pred HHHHHHHHHHhH----Hhc--Cc--CCceEEEecCCchHHHHHHHHHHhccCCCcccCCcceEEee
Confidence 68999999 95 453 22 46789999999999999999999998875432234333343
No 78
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella tularensis subsp} PDB: 4e3w_A 2glc_A 2glb_A 2gla_A 3it0_A* 3it1_A* 3it2_A 2p36_A*
Probab=89.56 E-value=0.15 Score=55.82 Aligned_cols=122 Identities=15% Similarity=0.212 Sum_probs=81.6
Q ss_pred CcchhhhhhhhhccccCCc----ccHHHHHHHHHHhcceecccccCCCchhhhhHHHHHHHHHHHHHHHHHHHhHHHHhH
Q 001944 668 PDVYDSCKYDLLHNAHLNL----EGLDELFKVAQLLADGVIPNEYGINPKQKLKIGSKIARRLLGKLLIDLRNTREEAIS 743 (993)
Q Consensus 668 pdiYD~iKYD~lHN~~l~l----~~l~ELY~~aK~LaD~V~PqEYGI~~~EKl~IG~~~~~pLL~KI~~DL~~~~~e~~~ 743 (993)
-.|||++.+.-.||..+.- +.+..|..++..-+++. ..--++......|||++|+..|+...+.
T Consensus 181 ~~i~D~l~~~~~hg~~lp~w~~~~~~~~l~~l~~~~~~~~---------~~~~~~~~~~gg~ll~~i~~~l~~~~~~--- 248 (342)
T 3it3_A 181 ITVGDVLIVAQAHGKPLPKGLSQEDADQIIALTDWGLAQQ---------FKSQKVSYIMGGKLTNRMIEDLNNAVNG--- 248 (342)
T ss_dssp HHHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHHHHHHH---------HTSHHHHHHHHHHHHHHHHHHHHHHHSS---
T ss_pred HHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHh---------hCCHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 3478888888888876631 12344444443333321 1224578888999999999999864200
Q ss_pred HhhhhcccccccccccccccCCCCCCccccccccccCCCCccCCCCCCCCCcccccccccCcccCCCCCCccceeeEEEe
Q 001944 744 VAELKSSQDQVSKSTKTEKEDKDYPPKLFIKADDTRRSSTTSDISMDQDDDDDKETQYRLDPKYANVKTPERHVRTRLYF 823 (993)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~E~~~RL~p~ya~V~SP~RhVRtrlYF 823 (993)
.+ ..|-.+||
T Consensus 249 -------------------------------------~~---------------------------------~~k~~l~~ 258 (342)
T 3it3_A 249 -------------------------------------KS---------------------------------KYKMTYYS 258 (342)
T ss_dssp -------------------------------------SC---------------------------------CCSEEEEE
T ss_pred -------------------------------------CC---------------------------------CceEEEEE
Confidence 00 14679999
Q ss_pred ecchhHHHHHHHHHhcCCcccccccchhhhhhhhhhhcCCCCCcccccceEEEEecCCCCCCCCCeeEEEEEecCCC
Q 001944 824 TSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENTAVALEDPKRFRIELTFSRGA 900 (993)
Q Consensus 824 TsESHIhsLLNvlr~~~l~~~~~~e~~~i~~~a~~~l~~i~ELdYlSqIvf~lYE~~~~~~~~~~rf~Iei~~SpG~ 900 (993)
+..+-|-+||..| |+.. ..+| .|-+.|+||||++. ..+.||+.+.-+.
T Consensus 259 ~HD~ti~~ll~aL---g~~~-----------------~~~p--p~as~i~~El~~~~-------~~~~Vr~~~~~~~ 306 (342)
T 3it3_A 259 GHALTLLEVMGTL---GVPL-----------------DTAP--GYASNLEMELYKDG-------DIYTVKLRYNGKY 306 (342)
T ss_dssp ECHHHHHHHHHHT---TCCC-----------------SSCC--CTTCEEEEEEEEET-------TEEEEEEEETTEE
T ss_pred ecHHHHHHHHHHh---CCCc-----------------CCCC--CCcceEEEEEEEcC-------CceEEEEEEeCce
Confidence 9999999999887 3322 2344 47899999999975 5688999986554
No 79
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle, glycoprotein phosphohistidine, hydrolase; HET: NEP NAG; 1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB: 1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Probab=87.82 E-value=0.25 Score=55.41 Aligned_cols=54 Identities=19% Similarity=0.163 Sum_probs=40.8
Q ss_pred hhHHHhhc--cCCCCcchhhhhhcccccceEeecCCchHHHHHHHHHHhhccCCC-------CCCcceeeeE
Q 001944 454 NEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG-------QLTPILVSLV 516 (993)
Q Consensus 454 e~LG~~fR--Yp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~leg-------eLtPilv~lV 516 (993)
.+||+.|| |+ +|| .. +.+.|.||+-.||.+||++|+.||....+ .+.|+.+..|
T Consensus 113 ~~lG~~lr~rY~----~ll--~~---~~v~vrST~~~Rti~Sa~~fl~Gl~p~~~~~~~~~~~~~p~~~~~i 175 (442)
T 1qwo_A 113 VNSGIKFYQRYK----ALA--RS---VVPFIRASGSDRVIASGEKFIEGFQQAKLADPGATNRAAPAISVII 175 (442)
T ss_dssp HHHHHHHHHHTH----HHH--TT---CCCEEEEESCHHHHHHHHHHHHHHHHHHHTCTTCCCCCCCCEEEEE
T ss_pred HHHHHHHHHHHH----HHh--cc---CceEEEeCCccHHHHHHHHHHHHhcCCcccccccccccCccceEEe
Confidence 68999999 85 453 22 46889999999999999999999986542 2456664334
No 80
>1qfx_A Protein (PH 2.5 acid phosphatase); phosphomonoesterase, hydrolase; HET: NAG BMA MAN; 2.40A {Aspergillus niger} SCOP: c.60.1.2
Probab=87.34 E-value=0.27 Score=55.87 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=38.2
Q ss_pred cch--hhHHHhhc--cCCCCcchhhhhhcccccceEeecCCchHHHHHHHHHHhhccCC
Q 001944 451 NGV--NEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLE 505 (993)
Q Consensus 451 GGE--e~LG~~fR--Yp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~le 505 (993)
|.+ -+||+.|| |+ +|| .. ...+.|+||+-.||.+||++|+.||...+
T Consensus 122 G~~q~~~lG~~lr~rY~----~ll--~~--~~~v~vrST~~~Rti~SA~~fl~Glf~~~ 172 (460)
T 1qfx_A 122 GLLDAYNHGNDYKARYG----HLW--NG--ETVVPFFSSGYGRVIETARKFGEGFFGYN 172 (460)
T ss_dssp HHHHHHHHHHHHHHHHG----GGC--CS--SSCEEEEEESBHHHHHHHHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHHHhH----HHh--CC--CCceEEEECCCcHHHHHHHHHHHHhcCCc
Confidence 544 68999999 86 343 22 56789999999999999999999998753
No 81
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella pneumoniae} PDB: 2wni_A 2wu0_A
Probab=86.41 E-value=0.28 Score=54.88 Aligned_cols=49 Identities=20% Similarity=0.178 Sum_probs=38.5
Q ss_pred hhHHHhhc--cCCCCcchhhhhh-ccc-ccceEeecCCchHHHHHHHHHHhhccCCC
Q 001944 454 NEIAYWWG--SHSEGTGLLRLHS-TYR-HDLKIYSSDEGRVQMSAAAFAKGLLDLEG 506 (993)
Q Consensus 454 e~LG~~fR--Yp~~~~gLLrLhs-t~r-hDlKIysSdEgRVq~TAaaFakg~L~leg 506 (993)
..||+.|| |+. .||| .. .|- .++.|+||+-.|+++||++|+.||....+
T Consensus 65 ~~lG~~lr~rY~~--~~ll--~~~~~~~~~v~~rst~~~Rt~~Sa~~fl~Gl~p~~~ 117 (418)
T 2wnh_A 65 VNKGREEGQHYRQ--LGLL--QAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCG 117 (418)
T ss_dssp HHHHHHHHHHHHH--TTSS--CSSSCCTTTEEEEECSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHh--cCCc--ccCCCCCCeEEEEECCCHHHHHHHHHHHHHcCCCCC
Confidence 68999998 863 2553 33 243 57999999999999999999999986543
No 82
>3k4q_A 3-phytase A; PHYA, 3-phosphotase, MYO-inositol hexakis phosphate phosphohydrolase, 37288-11-2, MYO-inositol hexakis sulfate, 62-1; HET: IHS NAG; 2.20A {Aspergillus niger} SCOP: c.60.1.2 PDB: 3k4p_A* 1ihp_A
Probab=86.37 E-value=0.58 Score=53.17 Aligned_cols=43 Identities=26% Similarity=0.162 Sum_probs=35.0
Q ss_pred hhHHHhhc--cCCCCcchhhhhhcccccceEeecCCchHHHHHHHHHHhhccCC
Q 001944 454 NEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLE 505 (993)
Q Consensus 454 e~LG~~fR--Yp~~~~gLLrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~le 505 (993)
-+||+.|| |+. |+. . ..+.++||+-.||.+||++|+.||+..+
T Consensus 114 ~~lG~~~r~rY~~----l~~--~---~~~~~rst~~~Rt~~Sa~~f~~Gl~~~~ 158 (444)
T 3k4q_A 114 VNSGIKFYQRYES----LTR--N---IVPFIRSSGSSRVIASGKKFIEGFQSTK 158 (444)
T ss_dssp HHHHHHHHHHTHH----HHT--T---CCCEEEEEESHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHH----hcc--C---CceEEEeCCccHHHHHHHHHHHhcCCCc
Confidence 57899998 863 432 1 3477999999999999999999999864
No 83
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP: c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A* 2l3h_A 2l77_A 2l79_A
Probab=86.12 E-value=0.33 Score=52.11 Aligned_cols=47 Identities=28% Similarity=0.354 Sum_probs=37.9
Q ss_pred hhHHHhhc--cCCCCcchhhhhhcc-cccceEeecCCchHHHHHHHHHHhhccCCC
Q 001944 454 NEIAYWWG--SHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 506 (993)
Q Consensus 454 e~LG~~fR--Yp~~~~gLLrLhst~-rhDlKIysSdEgRVq~TAaaFakg~L~leg 506 (993)
-+||+.|| |+ +| |...| ..++.|+||+-.||.+||++|+.||....|
T Consensus 47 ~~lG~~lr~rY~----~l--l~~~~~~~~v~vrst~~~Rt~~SA~~fl~Gl~p~~~ 96 (354)
T 1nd6_A 47 YELGEYIRKRYR----KF--LNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEG 96 (354)
T ss_dssp HHHHHHHHHHTT----TT--TCSSCCGGGEEEEEESCHHHHHHHHHHHHHHSCCCG
T ss_pred HHHHHHHHHHHH----HH--hccccCcCeEEEEECCchHHHHHHHHHHHhcCCCCC
Confidence 68999999 96 34 33344 457899999999999999999999986543
No 84
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=83.63 E-value=0.83 Score=51.43 Aligned_cols=44 Identities=27% Similarity=0.372 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccc
Q 001944 57 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG 113 (993)
Q Consensus 57 ~~v~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~G 113 (993)
..+.++|+++|||+|++.++... ++.... -..+++|+|+||...
T Consensus 6 ~~aK~lL~~~GIpvp~~~~~~s~------------eea~~a-a~~lG~PvVvKa~~~ 49 (397)
T 3ufx_B 6 YQAKEILARYGVPVPPGKVAYTP------------EEAKRI-AEEFGKRVVIKAQVH 49 (397)
T ss_dssp HHHHHHHHHTTCCCCCEEEESSH------------HHHHHH-HHHHTSCEEEEECCS
T ss_pred HHHHHHHHHCCCCCCCeEEECCH------------HHHHHH-HHHcCCCEEEEEccc
Confidence 45788999999999999998661 122221 124568999999883
No 85
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase, phytate binding site, hydrolase; HET: IHP; 1.88A {Enterobacter cloacae} PDB: 1nt4_A*
Probab=82.03 E-value=0.63 Score=52.35 Aligned_cols=58 Identities=17% Similarity=0.302 Sum_probs=39.5
Q ss_pred eeeEEEeecchhHHHHHHHHHhcCCcc-cccccchhhhhhhhhhhcCCCCCcccccceEEEEecCCCCCCCCCeeEEEEE
Q 001944 817 VRTRLYFTSESHIHSLMNVLRYCNLDE-SLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENTAVALEDPKRFRIELT 895 (993)
Q Consensus 817 VRtrlYFTsESHIhsLLNvlr~~~l~~-~~~~e~~~i~~~a~~~l~~i~ELdYlSqIvf~lYE~~~~~~~~~~rf~Iei~ 895 (993)
.|-.+||+-.+-|-+|++.|- +.. .+- . .-..+ -|-+.|+||+|.+.+ ..+|.||+.
T Consensus 279 ~Kl~lysgHDttI~~ll~aLg---~~~~~lp-------~----~~~~~---P~gs~lifEl~~~~~-----~g~~~Vrv~ 336 (398)
T 3ntl_A 279 PKITLLVGHDSNIASLLTALD---FKPYQLH-------D----QQERT---PIGGKIVFQRWHDKN-----ANQELMKIE 336 (398)
T ss_dssp CSEEEEEECHHHHHHHHHHTT---BCCCCCT-------T----CSCSS---CTTCEEEEEEEEETT-----TTEEEEEEE
T ss_pred ceEEEEEechhhHHHHHHHhC---CCCccCC-------C----cCCCC---CccceeeEEEEEecC-----CCcEEEEEE
Confidence 357999999999999998873 321 100 0 00112 378999999999852 246889988
Q ss_pred e
Q 001944 896 F 896 (993)
Q Consensus 896 ~ 896 (993)
+
T Consensus 337 ~ 337 (398)
T 3ntl_A 337 Y 337 (398)
T ss_dssp E
T ss_pred E
Confidence 8
No 86
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=80.55 E-value=0.38 Score=54.20 Aligned_cols=140 Identities=13% Similarity=0.194 Sum_probs=69.3
Q ss_pred CCCcCEEeecccCCCChHHHHHHHhhcCCc-ccCCcchhhhhhhHHHHHHHHHh------CCCCCCCEEEE-ecc--CCC
Q 001944 13 WPICDCLIAFYSSGYPLEKAESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEK------YGIPVPRYALV-NRE--VPY 82 (993)
Q Consensus 13 WP~cD~LIsF~S~GFPL~KAi~y~~lr~p~-~iNdl~~q~ll~DR~~v~qiL~~------~gIP~P~t~~~-~r~--~p~ 82 (993)
=+.||++-+- +...|..+.-. ..+++ .||.++--..+--|-.-.+.|++ .-==.|+|.++ ..+ .|.
T Consensus 37 ~~~~dl~W~~-~~~~p~~~l~~---~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~~~~~~~~f~P~ty~L~P~~~~~p~ 112 (380)
T 3tig_A 37 NPKFNLMLGE-RNRLPFGRLGH---EPGLVQLVNYYRGADKLCRKASLVKLIKTSPELTETCTWFPESYVIYPTNEKTPA 112 (380)
T ss_dssp CSCCSEEECC-SSSCCGGGSSC---STTCCCEESCCTTTHHHHSHHHHHHHHHHCHHHHTTCTTSCCEEECCC-------
T ss_pred CCceeEEEec-CCCCCHHHhcc---CCCcceEEeecCCcccccccHHHHHHHHHhhhcccccCcCCcceeeCcccccccc
Confidence 3567777762 22344421100 01332 67888776655556444444433 34467888887 332 110
Q ss_pred ---c-cc------cccccccceee-e-----cCeeccCcEEEeeccccCcceeEEeccCCCChHHHHHhhcCCCcccccc
Q 001944 83 ---Q-EL------DYFIEEEDFVE-V-----HGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHP 146 (993)
Q Consensus 83 ---~-~~------~~~~e~~d~i~-v-----~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~p 146 (993)
. .. ....|-++++. + .|. ..++|+||..|+ +|-|.. |++....-...++
T Consensus 113 ~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~--~~~wI~KP~~~s-----------rG~GI~-l~~~~~~i~~~~~- 177 (380)
T 3tig_A 113 MRARNGLPDLANAPRTDEREEFRSSFNKKKENEE--GNVWIAKSSSGA-----------KGEGIL-ISSDATELLDFID- 177 (380)
T ss_dssp -----------------CCHHHHHHHHHHHHTTC--CCCEEEEESCC---------------CCB-CCSCSHHHHHHHH-
T ss_pred ccccccccccccccchhHHHHHHHHHHHhhhcCC--CCeEEEeCCccC-----------CCCCEE-EeCCHHHHHHHHh-
Confidence 0 00 00011222222 1 122 479999999998 787864 6664421000011
Q ss_pred cccccccCcceEEeeccCC------CC--ceeEEEEEC
Q 001944 147 DVRRVRREGSYIYEEFMPT------GG--TDVKVYTVG 176 (993)
Q Consensus 147 ~~~~~r~~gsyIyEEFi~t------~G--~DIKVytVG 176 (993)
.....||+|+||.. +| -|||+||+-
T Consensus 178 -----~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlv 210 (380)
T 3tig_A 178 -----NQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLV 210 (380)
T ss_dssp -----HHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEE
T ss_pred -----ccCCcEEEEecccCceeecCCCceeEEEEEEEE
Confidence 13568999999975 45 599999883
No 87
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella pneumoniae} PDB: 2wni_A 2wu0_A
Probab=80.13 E-value=0.94 Score=50.62 Aligned_cols=104 Identities=12% Similarity=0.068 Sum_probs=61.7
Q ss_pred eeeEEEeecchhHHHHHHHHHhcCCcccccccchhhhhhhhhhhcCCCCCcccccceEEEEecCCCCCCCCCeeEEEEEe
Q 001944 817 VRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENTAVALEDPKRFRIELTF 896 (993)
Q Consensus 817 VRtrlYFTsESHIhsLLNvlr~~~l~~~~~~e~~~i~~~a~~~l~~i~ELdYlSqIvf~lYE~~~~~~~~~~rf~Iei~~ 896 (993)
.|-.+||+-.+-|.+||..|- ++..+ ..- +-..+| +-|.|+||||++.+ ...+.||+.+
T Consensus 282 ~Kl~~ysgHDtti~~ll~aLg---~~~~~-------P~y---~~~~~P---~as~l~fEl~~~~~-----~~~~~Vrv~y 340 (418)
T 2wnh_A 282 VRWLLLVAHDTNIAMVRTLMN---FSWQL-------PGY---SRGNIP---PGSSLVLERWRDAK-----SGERYLRVYF 340 (418)
T ss_dssp CSEEEEEECHHHHHHHHHHHT---CCCCC-------TTS---CTTCCC---TTCEEEEEEEEETT-----TCCEEEEEEE
T ss_pred eeEEEEEecHHHHHHHHHHhC---CCccC-------CCC---ccCCCC---CccEEEEEEeeecC-----CCceEEEEEE
Confidence 357899999999999999983 32111 000 001233 38999999999852 2468899998
Q ss_pred cCCCCCCCCCcCCCccCCCCCCccc--------ccCCCccccccCCcccHHHHHHhhccCCC
Q 001944 897 SRGADLSPLEKNDSEASSLHQEHTL--------PIMGPERLQEVGSYLTLEKMEKMIRPFAM 950 (993)
Q Consensus 897 SpG~~~~pl~~~~~~~~~ld~~H~l--------~~~pr~~L~~~~~~l~l~~~~~~~~~~~~ 950 (993)
.-+....|-+ ...|+..|.. +|.. ...+..-+|+++.+.++.+..
T Consensus 341 ~n~s~~~~r~-----~~~l~~~~p~~~~~l~lpgC~~----~~~~~~Cpl~~F~~~~~~~~~ 393 (418)
T 2wnh_A 341 QAQGLDDLRR-----LQTPDAQHPMLRQEWRQPGCRQ----TDVGTLCPFQAAITALGQRID 393 (418)
T ss_dssp EECCHHHHHH-----TCCCCTTSCCEEEECCCTTCEE----ETTEEEEEHHHHHHHHTTTCC
T ss_pred EcCcchhhhc-----cccccccCCCcceeeecCCCCC----CCCCCcCCHHHHHHHHHHHhh
Confidence 7765211110 0222223321 2310 112256789999999999863
No 88
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=75.43 E-value=1.3 Score=51.33 Aligned_cols=51 Identities=14% Similarity=0.226 Sum_probs=35.0
Q ss_pred cCcceEEeeccCC-------CC------ceeEEEEECCc----eeEEEeeeCCCCCCeeeecCCCCce
Q 001944 153 REGSYIYEEFMPT-------GG------TDVKVYTVGPE----YAHAEARKSPVVDGVVMRNPDGKEV 203 (993)
Q Consensus 153 ~~gsyIyEEFi~t-------~G------~DIKVytVG~~----~vhAe~RKSP~vDG~vrrN~~gke~ 203 (993)
....||.||+++- +| .|+|+|++.++ +..+-+|-++..+..|-....||+.
T Consensus 399 ~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g~~~~v~pGgltRva~~~~~~vvn~s~Gggs 466 (474)
T 3n6x_A 399 NPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGKTVSLVPGALCRVALREGSLVVNSSQGGGT 466 (474)
T ss_dssp SGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEESSSEEECSCCEEEEECSTTCCCCSTTSSEEE
T ss_pred CCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcCCceEEecceEEEEecCCCCceEECCCCCcc
Confidence 4567999999972 23 59999999555 6788999997533334444445543
No 89
>2gfi_A Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces castellii}
Probab=61.70 E-value=3.4 Score=46.79 Aligned_cols=94 Identities=7% Similarity=0.037 Sum_probs=54.7
Q ss_pred eeeEEEeecchhHHHHHHHHHhcCCccc---cccc---chhhhhhhhhhhcCCCCCcccccceEEEEecCCCCCCCCCee
Q 001944 817 VRTRLYFTSESHIHSLMNVLRYCNLDES---LQGE---DSLVCHSALERLYKTKELDYMSYIVLRMFENTAVALEDPKRF 890 (993)
Q Consensus 817 VRtrlYFTsESHIhsLLNvlr~~~l~~~---~~~e---~~~i~~~a~~~l~~i~ELdYlSqIvf~lYE~~~~~~~~~~rf 890 (993)
.+-.+||+-.+-|-.||..| |+... +... ....|+. +.+| -|-++|+||+|++.. .+
T Consensus 324 ~k~~l~f~HD~ti~~ll~aL---gl~~~~~~l~~~~~~~~r~~~~-----s~~p--P~aa~i~~El~~~~~-------~~ 386 (458)
T 2gfi_A 324 NKIWLSFTHDTDIEIFHSAI---GILIPDEDLPVDYTPFPSPYSH-----VGIT--PQGARTIIEKYACGN-------ES 386 (458)
T ss_dssp CCEEEEEECHHHHHHHHHHH---CSSCCSSCCCSSSCCSSCSSCH-----HHHC--CTTCEEEEEEEEETT-------EE
T ss_pred ccEEEEEECchhHHHHHHHc---CCCCCCCCCCCCCcCcCCCccc-----cccc--CCcccEEEEEEEcCC-------Cc
Confidence 35799999999999988888 34211 0000 0001111 1233 388999999999862 45
Q ss_pred EEEEEecCCCCCCCCCcCCCccCCCCCCcccccCCCccccccCCcccHHHHHHhhccCC
Q 001944 891 RIELTFSRGADLSPLEKNDSEASSLHQEHTLPIMGPERLQEVGSYLTLEKMEKMIRPFA 949 (993)
Q Consensus 891 ~Iei~~SpG~~~~pl~~~~~~~~~ld~~H~l~~~pr~~L~~~~~~l~l~~~~~~~~~~~ 949 (993)
-||+.+.- .| ++| -+|.- ..+..-+|+++.+.+++..
T Consensus 387 ~Vrvl~N~----~~--------~~l-----pgC~~-----~~~~~Cpl~~F~~~~~~~~ 423 (458)
T 2gfi_A 387 YVRYVIND----AV--------IPI-----KKCSS-----GPGFSCNLNDYNDYVAERV 423 (458)
T ss_dssp EEEEEETT----EE--------ECB-----TTBCC-----SGGGCEEHHHHHHHHHHHH
T ss_pred EEEEEECC----ce--------ecC-----CCCCC-----CCCCcccHHHHHHHHHHhh
Confidence 68887732 11 222 12320 1124778999999888763
No 90
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=60.76 E-value=9 Score=45.98 Aligned_cols=66 Identities=14% Similarity=0.313 Sum_probs=32.9
Q ss_pred cEEEeeccc-cCcceeEEeccCCCChHHHHHhhcCCCcccccccccccccCcceEEeeccCCC---C--ceeEEEEECCc
Q 001944 105 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG---G--TDVKVYTVGPE 178 (993)
Q Consensus 105 PfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~p~~~~~r~~gsyIyEEFi~t~---G--~DIKVytVG~~ 178 (993)
.+|.||+.| +..||.|+-+ ++ . +.... . ..-.++.||||||++-. | .=|=+|+||++
T Consensus 544 ~yV~KPi~gReG~nV~I~~~----~~-~-~~~~~---~--------g~y~~~~~IyQe~~~lp~f~~~~~~iG~~lvg~~ 606 (652)
T 2vob_A 544 GYAKKPIVGRVGSNVIITSG----DG-V-VHAES---G--------GKYGKRNMIYQQLFELKKQDDYYAIIGGWMIGDA 606 (652)
T ss_dssp CEEEEECC--------------------------------------------CEEEEECCC--CBTTBCCEEEEEEETTE
T ss_pred CeEeccCCCCCCCCEEEEcC----Cc-h-hhhhc---c--------cccCCCCeEEEecccCCccCCcceEEEEEEECCE
Confidence 599999999 6666666521 11 1 11100 0 11135779999999762 1 44678999999
Q ss_pred eeEEEeeeC
Q 001944 179 YAHAEARKS 187 (993)
Q Consensus 179 ~vhAe~RKS 187 (993)
++..-.|.+
T Consensus 607 ~aGi~iR~~ 615 (652)
T 2vob_A 607 FSGTGIRED 615 (652)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEEecC
Confidence 999999986
No 91
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle, glycoprotein phosphohistidine, hydrolase; HET: NEP NAG; 1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB: 1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Probab=60.65 E-value=3.7 Score=46.01 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=17.8
Q ss_pred CccceEEEEEEEEcCCCCcc
Q 001944 311 QSEELRCVIAVMRHGDRTPK 330 (993)
Q Consensus 311 ~~~eLr~vvaViRHgDRTPK 330 (993)
...+|+=|..|.|||+|||-
T Consensus 45 ~g~~l~~V~vl~RHG~R~P~ 64 (442)
T 1qwo_A 45 KDCRITLVQVLSRHGARYPT 64 (442)
T ss_dssp TTEEEEEEEEEEECCCBCCC
T ss_pred CCCeeEEEEEEecCcCcCCC
Confidence 35699999999999999994
No 92
>1qfx_A Protein (PH 2.5 acid phosphatase); phosphomonoesterase, hydrolase; HET: NAG BMA MAN; 2.40A {Aspergillus niger} SCOP: c.60.1.2
Probab=56.25 E-value=4.7 Score=45.72 Aligned_cols=99 Identities=9% Similarity=0.034 Sum_probs=54.2
Q ss_pred eeEEEeecchhHHHHHHHHHhcCCccc---cccc---chhhhhhhhhhhcCCCCCcccccceEEEEecCCCCCCCCCeeE
Q 001944 818 RTRLYFTSESHIHSLMNVLRYCNLDES---LQGE---DSLVCHSALERLYKTKELDYMSYIVLRMFENTAVALEDPKRFR 891 (993)
Q Consensus 818 RtrlYFTsESHIhsLLNvlr~~~l~~~---~~~e---~~~i~~~a~~~l~~i~ELdYlSqIvf~lYE~~~~~~~~~~rf~ 891 (993)
+-.+||+-.+-|-.||..| |+... +... ....|+. +.|+ -|-+.|+||+|.+.... .+...+-
T Consensus 311 k~~l~f~HDttI~~ll~aL---Gl~~~~~pL~~~~~~~~r~w~~-----s~i~--P~aa~l~~El~~~~~~~-~~~~~~~ 379 (460)
T 1qfx_A 311 SLFFNFAHDTNITPILAAL---GVLIPNEDLPLDRVAFGNPYSI-----GNIV--PMGGHLTIERLSCQATA-LSDEGTY 379 (460)
T ss_dssp SEEEEEECHHHHHHHHHHH---TCSCCSSCCCSSSCCTTCSCCG-----GGTC--STTCEEEEEEEEECCBT-TBCSEEE
T ss_pred cEEEEEeccccHHHHHHHh---CCCCCCCCCCCCccccCCCcch-----hccc--CCcceEEEEEEecCCcc-CCCCCeE
Confidence 4699999888888888887 33221 0000 0000110 1122 48899999999986321 1134566
Q ss_pred EEEEecCCCCCCCCCcCCCccCCCCCCcccccCCCccccccCCcccHHHHHHhhccCC
Q 001944 892 IELTFSRGADLSPLEKNDSEASSLHQEHTLPIMGPERLQEVGSYLTLEKMEKMIRPFA 949 (993)
Q Consensus 892 Iei~~SpG~~~~pl~~~~~~~~~ld~~H~l~~~pr~~L~~~~~~l~l~~~~~~~~~~~ 949 (993)
||+.+.- .| ++| -+|.. ..+.+-+|+++.+.+++..
T Consensus 380 Vrvl~N~----~~--------~~l-----pgC~~-----~~~~~Cpl~~F~~~~~~~~ 415 (460)
T 1qfx_A 380 VRLVLNE----AV--------LPF-----NDCTS-----GPGYSCPLANYTSILNKNL 415 (460)
T ss_dssp EEEEETT----EE--------ECB-----TTBCC-----SGGGCEEHHHHHHHHHHHC
T ss_pred EEEEECC----ce--------ecC-----CCCCC-----CCCCcCcHHHHHHHHHHHh
Confidence 8887632 11 222 13421 1123677888888777654
No 93
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=45.75 E-value=11 Score=36.34 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=19.4
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||++++.++
T Consensus 47 ~i~sSpl~Ra~qTA~~i~~~~ 67 (161)
T 1ujc_A 47 RVLVSPFLRAEQTLEEVGDCL 67 (161)
T ss_dssp EEEECSSHHHHHHHHHHHHHS
T ss_pred EEEeCchHHHHHHHHHHHHhc
Confidence 599999999999999999874
No 94
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=44.68 E-value=12 Score=36.48 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=19.6
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||++++..+
T Consensus 57 ~i~sSpl~Ra~qTA~~i~~~~ 77 (173)
T 2rfl_A 57 LILSSTAARCRQTTQAWQRAF 77 (173)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHhc
Confidence 599999999999999999875
No 95
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP; 2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A* 1dkm_A 1dkn_A 1dko_A 1dkl_A
Probab=43.75 E-value=51 Score=36.55 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=40.1
Q ss_pred eeeEEEeecchhHHHHHHHHHhcCCcccccccchhhhhhhhhhhcCCCCCcccccceEEEEecCCCCCCCCCeeEEEEEe
Q 001944 817 VRTRLYFTSESHIHSLMNVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENTAVALEDPKRFRIELTF 896 (993)
Q Consensus 817 VRtrlYFTsESHIhsLLNvlr~~~l~~~~~~e~~~i~~~a~~~l~~i~ELdYlSqIvf~lYE~~~~~~~~~~rf~Iei~~ 896 (993)
.|-.+||+-.+-|.+||+.| |+...+-+ +.. ..-|-+.|+||+|++.. ...+-|+|.+
T Consensus 295 ~K~~~ysgHDttIa~ll~aL---g~~~~~P~-----------~~~---~~P~~s~l~fEl~~~~~-----~~~~~Vrv~y 352 (410)
T 1dkq_A 295 TSVLFIAGHDTNLANLGGAL---ELNWTLPG-----------QPD---NTPPGGELVFERWRRLS-----DNSQWIQVSL 352 (410)
T ss_dssp CSEEEEEECHHHHHHHHHHH---TCCCCBTT-----------BSS---SSCTTCEEEEEEEEETT-----TTEEEEEEEE
T ss_pred ceEEEEeccHHHHHHHHHHh---CCCccCCC-----------CCC---CCCcccEEEEEEeecCC-----CCcceEEEEE
Confidence 35799999999999999998 33211100 001 22389999999999852 2456788877
Q ss_pred c
Q 001944 897 S 897 (993)
Q Consensus 897 S 897 (993)
-
T Consensus 353 ~ 353 (410)
T 1dkq_A 353 V 353 (410)
T ss_dssp E
T ss_pred E
Confidence 4
No 96
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate mutase family member 5, BXLBV68, MGC protein, structural genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo sapiens} PDB: 3o0t_A
Probab=39.05 E-value=14 Score=36.56 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=19.6
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||++++.++
T Consensus 57 ~i~sSpl~Ra~qTA~~i~~~~ 77 (202)
T 3mxo_A 57 KIVHSSMTRAIETTDIISRHL 77 (202)
T ss_dssp EEEEESSHHHHHHHHHHHHTS
T ss_pred EEEECChHHHHHHHHHHHHhC
Confidence 599999999999999999876
No 97
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=36.40 E-value=18 Score=36.66 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=19.6
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||+++++++
T Consensus 51 ~i~sSpl~Ra~qTA~~i~~~~ 71 (240)
T 1qhf_A 51 VLYTSKLSRAIQTANIALEKA 71 (240)
T ss_dssp EEEECSSHHHHHHHHHHHHHT
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 499999999999999999876
No 98
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural genomics, medical STRU genomics of pathogenic protozoa, MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Probab=36.28 E-value=18 Score=36.97 Aligned_cols=21 Identities=24% Similarity=0.127 Sum_probs=19.9
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||+++++++
T Consensus 62 ~i~sSpl~Ra~qTA~~i~~~~ 82 (258)
T 3kkk_A 62 VVYTSVLKRAICTAWNVLKTA 82 (258)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECchHHHHHHHHHHHHhc
Confidence 599999999999999999987
No 99
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=36.14 E-value=18 Score=36.41 Aligned_cols=21 Identities=29% Similarity=0.140 Sum_probs=19.1
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||+++++++
T Consensus 51 ~i~sSpl~Ra~qTA~~i~~~~ 71 (213)
T 3hjg_A 51 GIISSPLSRCHDLAQILAEQQ 71 (213)
T ss_dssp CEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECChHHHHHHHHHHHhcc
Confidence 499999999999999999764
No 100
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural genomics, isomerase, structural GE consortium, SGC; 2.40A {Plasmodium falciparum}
Probab=35.96 E-value=16 Score=36.67 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=19.3
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||+++++.+
T Consensus 71 ~i~sSpl~Ra~qTA~~i~~~~ 91 (214)
T 3eoz_A 71 VIYHSDMIRAKETANIISKYF 91 (214)
T ss_dssp EEEECSSHHHHHHHHHHHTTC
T ss_pred EEEECCcHHHHHHHHHHHHHC
Confidence 499999999999999998876
No 101
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=35.94 E-value=18 Score=36.06 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=19.7
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||+++++++
T Consensus 58 ~i~sSpl~Ra~qTA~~i~~~~ 78 (211)
T 1fzt_A 58 IAFTSALQRAQKTCQIILEEV 78 (211)
T ss_dssp EEEEESSHHHHHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 599999999999999999886
No 102
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=35.82 E-value=19 Score=36.93 Aligned_cols=21 Identities=14% Similarity=0.020 Sum_probs=19.8
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||+++++++
T Consensus 60 ~i~sSpl~Ra~qTA~~i~~~~ 80 (257)
T 3gp3_A 60 IAYTSVLKRAIRTLWHVQDQM 80 (257)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHHHHHHhc
Confidence 599999999999999999987
No 103
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio} PDB: 3e9d_A 3e9e_A
Probab=32.92 E-value=21 Score=37.08 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=19.8
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.||+.||++++.++
T Consensus 53 ~i~sSpl~Ra~qTA~~i~~~~ 73 (265)
T 3e9c_A 53 NVFVSNLQRAIQTAEIILGNN 73 (265)
T ss_dssp EEEECSSHHHHHHHHHHHHTC
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 599999999999999999886
No 104
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=32.43 E-value=23 Score=36.49 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.5
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||+++++++
T Consensus 84 ~i~sSpl~Ra~qTA~~i~~~~ 104 (263)
T 3c7t_A 84 HVYASPALRCVETAQGFLDGL 104 (263)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHHc
Confidence 599999999999999999876
No 105
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=32.03 E-value=24 Score=36.00 Aligned_cols=21 Identities=19% Similarity=0.021 Sum_probs=19.6
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||++++.++
T Consensus 53 ~i~sSpl~Ra~qTA~~i~~~~ 73 (249)
T 1e58_A 53 FAYTSVLKRAIHTLWNVLDEL 73 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 599999999999999999876
No 106
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=32.01 E-value=23 Score=36.43 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.8
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||++++.++
T Consensus 82 ~v~sSpl~Ra~qTA~~i~~~~ 102 (264)
T 3mbk_A 82 HVYCSPSLRCVQTAHNILKGL 102 (264)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECcHHHHHHHHHHHHHHh
Confidence 499999999999999999987
No 107
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=32.01 E-value=23 Score=35.67 Aligned_cols=21 Identities=38% Similarity=0.366 Sum_probs=19.7
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||++++.++
T Consensus 62 ~i~sSpl~Ra~qTA~~i~~~~ 82 (237)
T 3r7a_A 62 NAYSSDSGRAIETANLVLKYS 82 (237)
T ss_dssp EEEECSCHHHHHHHHHHHHHT
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 499999999999999999986
No 108
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=31.84 E-value=21 Score=35.53 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.0
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||++++.++
T Consensus 50 ~i~sSpl~Ra~qTA~~i~~~~ 70 (207)
T 1h2e_A 50 AIYTSTSGRALETAEIVRGGR 70 (207)
T ss_dssp EEEECSSHHHHHHHHHHHTTC
T ss_pred EEEECccHHHHHHHHHHHhcC
Confidence 599999999999999998753
No 109
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=31.52 E-value=19 Score=36.68 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=19.0
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||+++++.+
T Consensus 67 ~i~sSpl~Ra~qTA~~i~~~~ 87 (219)
T 2qni_A 67 RIVSSAETKAIETAHMLAETS 87 (219)
T ss_dssp EEEECSSHHHHHHHHHHTTTT
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 599999999999999998754
No 110
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=31.25 E-value=25 Score=36.39 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=19.6
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+=.|++.||+++++++
T Consensus 91 ~i~sSpl~Ra~qTA~~i~~~~ 111 (273)
T 3d4i_A 91 AVFASPALRCVQTAKHILEEL 111 (273)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECchHHHHHHHHHHHHHc
Confidence 499999999999999999876
No 111
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET: CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Probab=31.18 E-value=24 Score=36.48 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=19.6
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||+++++++
T Consensus 54 ~i~sSpl~Ra~qTA~~i~~~~ 74 (262)
T 1yfk_A 54 ICFTSVQKRAIRTLWTVLDAI 74 (262)
T ss_dssp EEEECSCHHHHHHHHHHHHHT
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 599999999999999999876
No 112
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria, glycolysis, I structural genomics consortium, SGC; 2.01A {Cryptosporidium parvum}
Probab=30.38 E-value=26 Score=36.45 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=19.5
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||+++++++
T Consensus 71 ~i~sSpl~Ra~qTA~~i~~~~ 91 (267)
T 3d8h_A 71 VVYTSVLKRAIMTTWTVLKEL 91 (267)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECChHHHHHHHHHHHHhc
Confidence 499999999999999999876
No 113
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.45A {Mycobacterium leprae}
Probab=29.41 E-value=27 Score=36.23 Aligned_cols=21 Identities=19% Similarity=0.061 Sum_probs=19.6
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||+++++++
T Consensus 78 ~i~sSpl~Ra~qTA~~i~~~~ 98 (268)
T 4eo9_A 78 VLYTSLLRRAITTAHLALDTA 98 (268)
T ss_dssp EEEECSSHHHHHHHHHHHHHT
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 599999999999999999876
No 114
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=29.38 E-value=28 Score=36.17 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=19.6
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||+++++++
T Consensus 54 ~i~sSpl~Ra~qTA~~i~~~~ 74 (267)
T 2hhj_A 54 LVFTSVLNRSIHTAWLILEEL 74 (267)
T ss_dssp EEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 499999999999999999876
No 115
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.30A {Borrelia burgdorferi}
Probab=28.74 E-value=28 Score=36.15 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=19.7
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++-||+++++++
T Consensus 78 ~v~sSpl~Ra~qTA~~i~~~~ 98 (274)
T 4emb_A 78 IAFSSLLSRANDTLNIILREL 98 (274)
T ss_dssp EEEECSSHHHHHHHHHHHHHT
T ss_pred EEEECChHHHHHHHHHHHHhc
Confidence 499999999999999999886
No 116
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=27.81 E-value=30 Score=34.11 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=19.1
Q ss_pred eEeecCCchHHHHHHHHHHh
Q 001944 481 KIYSSDEGRVQMSAAAFAKG 500 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg 500 (993)
.||||.-.|++.||+++++.
T Consensus 49 ~i~sSp~~Ra~qTa~~l~~~ 68 (172)
T 3f2i_A 49 LIVTSPLIRARQTAEILLAS 68 (172)
T ss_dssp EEEECSSHHHHHHHHHHHHT
T ss_pred EEEECChHHHHHHHHHHHhc
Confidence 59999999999999999987
No 117
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced glycolysis and apoptosis regulator, CAsp target, structural genomics medical relevance; HET: MSE; 1.75A {Homo sapiens}
Probab=25.45 E-value=31 Score=35.93 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=19.7
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||.-.|++.||++++.++
T Consensus 58 ~v~sSpl~Ra~qTA~~i~~~~ 78 (275)
T 3dcy_A 58 HAFSSDLMRTKQTMHGILERS 78 (275)
T ss_dssp EEEECSSHHHHHHHHHHHTTC
T ss_pred EEEECChHHHHHHHHHHHHhc
Confidence 599999999999999999886
No 118
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate mutase, SH3 domain binding, structural genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Probab=22.74 E-value=42 Score=35.08 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=19.4
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
.||||+-.|++.||++++.++
T Consensus 55 ~i~sSpl~Ra~qTA~~i~~~~ 75 (265)
T 1rii_A 55 VLYTSLLRRAITTAHLALDSA 75 (265)
T ss_dssp EEEECSCHHHHHHHHHHHHHT
T ss_pred EEEECCcHHHHHHHHHHHHHc
Confidence 599999999999999999875
No 119
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote structure initiative; 1.75A {Saccharomyces cerevisiae} PDB: 3lg2_A 3oi7_A* 3ll4_A*
Probab=22.47 E-value=33 Score=35.44 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=19.1
Q ss_pred eEeecCCchHHHHHHHHHHhh
Q 001944 481 KIYSSDEGRVQMSAAAFAKGL 501 (993)
Q Consensus 481 KIysSdEgRVq~TAaaFakg~ 501 (993)
+||||.-.|++.||++++.++
T Consensus 61 ~i~sSpl~Ra~qTA~~i~~~~ 81 (265)
T 3f3k_A 61 YIFTSPRLRARQTVDLVLKPL 81 (265)
T ss_dssp EEEECSSHHHHHHHHHHTTTS
T ss_pred EEEECCHHHHHHHHHHHHHhc
Confidence 599999999999999998765
Done!