RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 001944
(993 letters)
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET:
ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A*
3t9d_A* 3t9e_A* 3t9f_A* 3t54_A* 3t99_A*
Length = 330
Score = 442 bits (1138), Expect = e-148
Identities = 165/279 (59%), Positives = 211/279 (75%), Gaps = 3/279 (1%)
Query: 13 WPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPR 72
WP+CDCLI+F+S G+PL+KA +YA LR PF++N+L Q+L+ DRR+VY L+ GI +PR
Sbjct: 55 WPLCDCLISFHSKGFPLDKAVAYAKLRNPFVINDLNMQYLIQDRREVYSILQAEGILLPR 114
Query: 73 YALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKE 132
YA++NR+ + IE ED VEV+G F KPFVEKPV +DH++ IYYP+SAGGG +
Sbjct: 115 YAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQR 174
Query: 133 LFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG 192
LFRK+G+RSS + P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG
Sbjct: 175 LFRKIGSRSSVYSPES-NVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDG 233
Query: 193 VVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVK 252
V R+ +GKEVRYPV+L EK +A +VC+AF+Q VCGFDLLR G+SYVCDVNG+SFVK
Sbjct: 234 KVERDSEGKEVRYPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVK 293
Query: 253 NSYKYYDDAACVLRKMFLEAKAPHLSSAIPPILPWKVNE 291
NS KYYDD A +L + + AP IP +P + +
Sbjct: 294 NSMKYYDDCAKILGNIVMRELAPQFH--IPWSIPLEAED 330
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 95.3 bits (236), Expect = 2e-21
Identities = 42/302 (13%), Positives = 80/302 (26%), Gaps = 81/302 (26%)
Query: 12 RWPICDCLIAF-YSSGYPLEKAESYATLRKPFLVNE-LEPQHLLHDRRKVYEQLEKYGIP 69
+ + G ++ Y L E ++ R ++ L K IP
Sbjct: 53 DKEPNAIITKRTHPVGKMADEMRKYEKDHPKVLFLESSAIHDMMSSREEINALLIKNNIP 112
Query: 70 VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD----DHSIMIYYPSS 125
+P V + E ++ PF+ KP + H + I
Sbjct: 113 IPNSFSVKSKE---------EVIQLLQSKQLIL--PFIVKPENAQGTFNAHQMKIVLEQE 161
Query: 126 AGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEAR 185
G+ ++ + + ++ VKV+ +G
Sbjct: 162 ---GIDDI--------------------HFPCLCQHYINHNNKIVKVFCIGNTLKWQTRT 198
Query: 186 KSPVVDGVVMRNPD-----------------------------------GKEVRYPVLLT 210
P V +++ D + +
Sbjct: 199 SLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILLNLTSE 258
Query: 211 PNEKQMAREVCIAFRQAVCGFDLLRCE--GRSYVCDVNGWSFVKNSYKYYDDAACVLRKM 268
+ +A +V A +CG D ++ G V DVN + SY D + K+
Sbjct: 259 AEMRDLAYKVRCALGVQLCGIDFIKENEQGNPLVVDVNVFP----SYGGKVDFDWFVEKV 314
Query: 269 FL 270
L
Sbjct: 315 AL 316
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4-5/6 phosphate, inositol phosphate,
inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB:
2qb5_A* 2odt_X
Length = 346
Score = 92.5 bits (229), Expect = 3e-20
Identities = 39/284 (13%), Positives = 82/284 (28%), Gaps = 56/284 (19%)
Query: 15 ICDCLIAFYSSGYPLEKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRY 73
I + S + + + Y +V + L L DR K YE + K +
Sbjct: 75 ILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDD 134
Query: 74 ALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD---HSIMIYYPSSAGGGM 130
+ + P+ EL ++ + N PF+ K H + I + G+
Sbjct: 135 RICSP--PFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQE---GL 189
Query: 131 KELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV 190
+ + + + F+ KV+ VG Y +
Sbjct: 190 NAI--------------------QPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNF 229
Query: 191 DGVVMRN-------------------PDGKEVRYPVLLTPNE--KQMAREVCIAFRQAVC 229
+ ++ +E ++++R + A ++
Sbjct: 230 SAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLF 289
Query: 230 GFDLLRCE--GRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLE 271
G D++ G+ V D+N + Y+ + L
Sbjct: 290 GIDIIINNQTGQHAVIDINAFP----GYEGVSEFFTDLLNHIAT 329
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.9 bits (170), Expect = 3e-12
Identities = 99/672 (14%), Positives = 199/672 (29%), Gaps = 188/672 (27%)
Query: 387 DSEAEDFEHSKKRIICVAILHLGGQFEKFFNVQD-------VLLSIQC-HLL-LANLVSG 437
D E + ++ K I+ F F+ +D +L + H++ + VSG
Sbjct: 8 DFETGEHQYQYKDIL----SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 438 QFIDFLIEQFYQDNGVN-------EIAYWWGSHSEGTGLL-RLHSTYRH---DLKIYSSD 486
F Q+ V I Y + L+ + + R ++Y
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKF--------LMSPIKTEQRQPSMMTRMYIEQ 115
Query: 487 EGRVQMSAAAFAKGL---LDLEGQLTPILVSLVSKDSSMLDGLDNA--SIEMEEAKARLN 541
R+ FAK L +L L+ L + ++DG+ + + +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-CLSY 174
Query: 542 EIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQVRQLAKDEDEDL 601
++ I W+ + + +L L KL ++ + D
Sbjct: 175 KVQCKMDFKIF--------WL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRS-----DH 219
Query: 602 AETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLER------DLY 655
+ +A L + + E ++
Sbjct: 220 SSNIKL----RIHSIQA---------------------ELRRLLKSKPYENCLLVLLNVQ 254
Query: 656 NERK-ERFDI-------TQIPDVYDSCKYDLLHNAHLNLEGLDELF---KVAQLLAD--G 702
N + F++ T+ V D H++L+ +V LL
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDF--LSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 703 VIPNEYGINPKQKLKIGSKIARRLLGKLLIDLRNTRE--EAISVAELKSSQDQVSKSTKT 760
P + P++ L + ++ + + D T + + ++ +L + + S +
Sbjct: 313 CRPQDL---PREVLTT-NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESSLNVLE 367
Query: 761 EKEDKDYPPKLFIKADDTRRSSTT------SDISMDQDDDDDKETQYRL---DPKYANVK 811
E + +L + + I D +K +Y L PK + +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 812 TPERHVRTRLYFTSESHIHSLM----NVLR-YCNLDESLQGEDSLVCHSALERLYKTKEL 866
P ++ ++ +E +H + N+ + + + D D Y
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ----------Y----- 472
Query: 867 DYMSYIV--LRMFENTAVALEDPKRFRIELTFSRGADLSPLE---KNDSEASSLHQEHTL 921
+ S+I L+ E+ E FR+ D LE ++DS A
Sbjct: 473 -FYSHIGHHLKNIEHP----ERMTLFRMVFL-----DFRFLEQKIRHDSTA--------- 513
Query: 922 PIMGPERLQEVGSYL-TLEKMEKMIRPFAMPAEDFPPPSTPAGFTGYFAKSASVLERLVN 980
GS L TL++++ + Y + ERLVN
Sbjct: 514 -------WNASGSILNTLQQLKF--------------------YKPYICDNDPKYERLVN 546
Query: 981 -LWPFHKNANSN 991
+ F N
Sbjct: 547 AILDFLPKIEEN 558
Score = 63.3 bits (153), Expect = 3e-10
Identities = 116/736 (15%), Positives = 208/736 (28%), Gaps = 262/736 (35%)
Query: 250 FVKNSYKY-YDDAACVLRKMF---LEAKAPHLSSAIPPILPWK-----VNEPVQPTEG-- 298
F ++Y Y D V F + K + IL + + G
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCK--DVQDMPKSILSKEEIDHIIMSK-DAVSGTL 65
Query: 299 ------LTRQGSGLGTFGQSEELRC----VIAVMRHGDRTPKQKVKLKVTE-EKLLN--- 344
L++Q + F E LR +++ ++ R P ++ + + ++L N
Sbjct: 66 RLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 345 LMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRPGRESDSEAEDFEHSKKRIICVA 404
+ KYN R + KL+ A L +L A +
Sbjct: 125 VFAKYNVSRLQPYLKLRQA--LLELRPAKNV----------------------------- 153
Query: 405 ILH-LGGQFEKFFNVQDVLLSIQCHLLLANLVSGQFIDFLIEQFYQDNGVNEIAYWWGSH 463
++ + G K +A V + ++ D + +W
Sbjct: 154 LIDGVLG-SGK-----------TW---VALDVCL---SYKVQCKM-DFKI----FWL--- 187
Query: 464 SEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSML 523
+LK +S E ++M L L Q+ P S
Sbjct: 188 ---------------NLKNCNSPETVLEM--------LQKLLYQIDPNWTSR-------S 217
Query: 524 DGLDNASIEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELL------- 576
D N + + +A L ++KS P + LL
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKS----------------------KPYENCLLVLLNVQN 255
Query: 577 PKLVK---------LT---KKVTEQV--------------RQLAKDEDEDL----AETNP 606
K LT K+VT+ + L DE + L + P
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 607 YDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQ 666
D +P + + + IA + L + W+ + D E
Sbjct: 316 QD-LPR--EVLTTNPRRLSI--IAESI----RDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 667 IPDVYDSCKYDLLHNAHLNLEGLDELFKVAQLLADGVIPNEYGINPKQKLKI-------- 718
P Y +D L V P I P L +
Sbjct: 367 EPAEYRKM-FDRL----------------------SVFPPSAHI-PTILLSLIWFDVIKS 402
Query: 719 -GSKIARRLLGKLLIDLRNTREEAISVAELKSSQDQVSKSTKTEKEDKDYPPKLFIKADD 777
+ +L L++ + +E IS+ + K + E++ + + +
Sbjct: 403 DVMVVVNKLHKYSLVE-KQPKESTISIPSI-------YLELKVKLENEYALHRSIVDHYN 454
Query: 778 TRRSSTTSDISMDQDDD---------------DDKETQYR---LDPKYANVKTPERHVRT 819
++ + D+ D ++ T +R LD ++ K RH T
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI--RHDST 512
Query: 820 RLYFTSESHIHSLMNVLRY--------CNLDESLQG--EDSLVCHSALERLYKTKELDYM 869
+ I + + L++ E L D L E L +K D +
Sbjct: 513 AW--NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL--PKIEENLICSKYTDLL 568
Query: 870 SYIVLRMFENTAVALE 885
I L M E+ A+ E
Sbjct: 569 R-IAL-MAEDEAIFEE 582
Score = 29.1 bits (64), Expect = 9.8
Identities = 22/92 (23%), Positives = 31/92 (33%), Gaps = 22/92 (23%)
Query: 22 FYSS-GYPL---EKAESYATLRKPFL-VNELEPQHLLHDRRK---------VYEQLEKYG 67
FYS G+ L E E R FL LE Q + HD +QL+ Y
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-QKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 68 IPVPRYALVNREVPYQELDYFIEEEDFVEVHG 99
Y N + ++ + DF+
Sbjct: 532 ----PYICDNDPKYERLVNAIL---DFLPKIE 556
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 65.9 bits (161), Expect = 8e-12
Identities = 45/206 (21%), Positives = 67/206 (32%), Gaps = 28/206 (13%)
Query: 42 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNR 101
+VN E D+ L K G+P P+ AL E +E G
Sbjct: 75 PVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDRE---------EALRLMEAFG-- 123
Query: 102 FWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEE 161
P V KPV G S G + +V + + +E
Sbjct: 124 --YPVVLKPVIG-----------SWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQE 170
Query: 162 FMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC 221
++ G D++V+ VG A R+S R G+ P LT +++ +
Sbjct: 171 YVEKPGRDIRVFVVGERAIAAIYRRSAHWITNTARG--GQAENCP--LTEEVARLSVKAA 226
Query: 222 IAFRQAVCGFDLLRCEGRSYVCDVNG 247
A V DL E V +VN
Sbjct: 227 EAVGGGVVAVDLFESERGLLVNEVNH 252
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.2 bits (148), Expect = 1e-09
Identities = 96/544 (17%), Positives = 180/544 (33%), Gaps = 171/544 (31%)
Query: 261 AACVLRKMFLEAKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSGLGTFGQSEELRCVIA 320
A L++ F P P +EP P E + + F L V +
Sbjct: 29 IASQLQEQFN-KILPE-----PTEGFAADDEPTTPAELVGK-------F-----LGYVSS 70
Query: 321 VMRHGDRTPKQKVKLKVT----EEKLLN------LMLKYNGGRPRAETKLKSAVQLQDLL 370
++ +V L + E L L K K K +++ +
Sbjct: 71 LVEPSKVGQFDQV-LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL--IKNYI 127
Query: 371 DATRILVPRSRPGRESDSEAEDFEHSKK---RIICVAILHLGGQ--FEKFFN-------- 417
A RI+ R ++S+S F + +++ AI GGQ + +F
Sbjct: 128 TA-RIMAKRPFD-KKSNSAL--FRAVGEGNAQLV--AIF--GGQGNTDDYFEELRDLYQT 179
Query: 418 ----VQDVLLSIQCHLLLANLVSGQFIDFLIEQFYQDNGVNEIAYWWGSHSEGT------ 467
V D++ L + L+ +D E+ + G+N + W + T
Sbjct: 180 YHVLVGDLIKFSAETL--SELIRTT-LDA--EKVFTQ-GLNILE--WLENPSNTPDKDYL 231
Query: 468 ----------GLLRLHSTYRHDLKI--YSSDEGRVQMSAA-AFAKGLLDLEGQLTPILVS 514
G+++L + Y K+ ++ E R + A ++GL+ T + ++
Sbjct: 232 LSIPISCPLIGVIQL-AHYVVTAKLLGFTPGELRSYLKGATGHSQGLV------TAVAIA 284
Query: 515 LVSKDSSMLDGLDNASIEM--------EEAKARLNEIIKSGSKMIHSNGSSDCPWMADGV 566
S + A I + EA + + + D + +
Sbjct: 285 ETDSWESFFVSVRKA-ITVLFFIGVRCYEAYPNTS---------LPPSILEDS--LENNE 332
Query: 567 GLPPNASELLPKLVKLTKKVTEQVRQLAKDE-DEDLAETNPYDVIPPYDQAK-AL--GKT 622
G+P S P L + L +++ + + +TN + +P Q + +L G
Sbjct: 333 GVP---S---PMLS---------ISNLTQEQVQDYVNKTNSH--LPAGKQVEISLVNGAK 375
Query: 623 NIDVDRIAAGLPCGSEGFLLMYARWRKLE--------RDLYNERKERFD-----ITQIPD 669
N+ + +G P G L RK + R ++ERK +F + P
Sbjct: 376 NL----VVSGPPQSLYGLNLTL---RKAKAPSGLDQSRIPFSERKLKFSNRFLPVA-SP- 426
Query: 670 VYDSCKYDLLHNA----HLNLEGLDELFKVAQLLADGVIP---NEYGINPKQKLKIGSKI 722
+ S LL A + +L + F + IP G + + L I
Sbjct: 427 -FHS---HLLVPASDLINKDLVKNNVSFNAKDI----QIPVYDTFDGSDL-RVLS--GSI 475
Query: 723 ARRL 726
+ R+
Sbjct: 476 SERI 479
Score = 50.4 bits (120), Expect = 3e-06
Identities = 75/506 (14%), Positives = 136/506 (26%), Gaps = 198/506 (39%)
Query: 590 VRQLAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYA---- 645
+L ++ D L +T ++I Y A+ + K D +A EG + A
Sbjct: 105 AAKLLQENDTTLVKT--KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 646 ------RWRKLERDLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGL-------DEL 692
+ +L RDLY Y DL+ + L L +++
Sbjct: 163 QGNTDDYFEEL-RDLY-------------QTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 693 FK--------------------------------VAQLLADGVIPNEYGINPKQKLKIGS 720
F V QL V G P +
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE------ 262
Query: 721 KIARRLLGKLLIDLRNTREEAISVAELKSSQDQVSKSTKTEKEDKDYPPKLFIKADDTR- 779
+ L G + + A ++++ + + F +
Sbjct: 263 -LRSYLKGAT------GHSQGLVTAVA------IAET-DSWES--------FFVSVRKAI 300
Query: 780 --------RS-----STTSDISMDQDDDDDKETQYRLDPKY------ANVKTPERHVR-T 819
R +T+ S+ +D ++ E P + + +V T
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV----PSPMLSISNLTQEQVQDYVNKT 356
Query: 820 RLYFTSESHIH-SLMN-----VLRYCNLDESLQGEDSLVCHSALERLYKTKELD------ 867
+ + + SL+N V+ +SL G L L + LD
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVV--SGPPQSLYG---LNLT--LRKAKAPSGLDQSRIPF 409
Query: 868 -------YMSYIVLRMF---------ENTAVALEDPKRFRIEL-----------TFSRGA 900
+ L + + + +D + + TF G+
Sbjct: 410 SERKLKFSNRF--LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD-GS 466
Query: 901 DLSPLEKNDSE---------------ASSLHQEHTLPIMGPERLQEVGSYLTLEKME--- 942
DL L + SE + H L GP +G LT +
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL-DFGPGGASGLGV-LTHRNKDGTG 524
Query: 943 -KMIRPFAM---PAEDFPPPSTPAGF 964
++I + P +D+ GF
Sbjct: 525 VRVIVAGTLDINPDDDY-------GF 543
Score = 50.0 bits (119), Expect = 4e-06
Identities = 49/333 (14%), Positives = 93/333 (27%), Gaps = 140/333 (42%)
Query: 688 GLD--ELFKVAQLL---ADGVIPNEYGI--------NPKQK-LKIGSKIARRLLGKLLID 733
G+D + K AQ + AD + YG NP + G + +R+
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI------- 1684
Query: 734 LRNTREEAISVAELKSSQDQVSKSTKTEKEDKDYPPKLFIKADDTRRSSTTSDISMDQDD 793
RE ++ ++ D KTEK K+ ++ + +
Sbjct: 1685 ----RENYSAMI-FETIVDG---KLKTEKIFKEINEH-------------STSYTFRSEK 1723
Query: 794 DDDKETQYRLDPKYANVKT-P-----E----RHVRTRLYFTSESHI--HSLMNVLRYCNL 841
TQ+ T P E ++++ +++ HSL
Sbjct: 1724 GLLSATQF----------TQPALTLMEKAAFEDLKSKGLIPADATFAGHSL--------- 1764
Query: 842 DESLQGEDS-LVCHSALERLYKTKELDYMSYIVLRMFENTAVALEDPKRFRIELTFSRGA 900
GE + L + D MS E+ +E+ F RG
Sbjct: 1765 -----GEYAALASLA-----------DVMS------IESL-----------VEVVFYRGM 1791
Query: 901 DLSPLEKNDSEASSLHQEHTLPIMGPERLQEVGSYLTLEKMEKMIRPFAMPAEDFPPPST 960
+ D S + M V + + E ++ ++
Sbjct: 1792 TMQVAVPRDELGRSNYG------MIAINPGRVAASFSQEALQYVVERVG----------- 1834
Query: 961 PAGFTGYFAKSASVLERLVNLWPFHKNANSNGK 993
++ ++E +VN N +
Sbjct: 1835 --------KRTGWLVE-IVNY-------NVENQ 1851
Score = 43.9 bits (103), Expect = 4e-04
Identities = 48/293 (16%), Positives = 90/293 (30%), Gaps = 91/293 (31%)
Query: 739 EEAISVAEL----------------KSSQDQVSKSTKTEKEDKDYPPKLFIKADDTRRSS 782
+E + AEL DQV TE E+ +++ +
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC------YLEGN------ 99
Query: 783 TTSDI-----SMDQDDDDDKETQYRLDPKY------ANVKTPERHVRTRLYFTSESHIHS 831
DI + Q++D L Y A ++ + L+
Sbjct: 100 ---DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS-NSALFRAVGEGNAQ 155
Query: 832 LM-------NVLRYCNLDESLQGEDSLVCHSALERLYKTKELDYMSYIVLRMFENTAVAL 884
L+ N Y +E L LY+T Y +V + + +A L
Sbjct: 156 LVAIFGGQGNTDDY--FEE-------------LRDLYQT----YHV-LVGDLIKFSAETL 195
Query: 885 EDPKRFRIELT--FSRGADLSP-LEKNDSEASS---LHQEHTLPIMGPERLQEVGSYLTL 938
+ R ++ F++G ++ LE + L + P++G + ++ Y+
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG---VIQLAHYVVT 252
Query: 939 EKMEKMIRPFAMPAEDFPPPSTPAGFTGYFAK--SASVLERLVNLWP-FHKNA 988
K+ P E G TG+ +A + + W F +
Sbjct: 253 AKLLGF-----TPGELRSYLK---GATGHSQGLVTAVAIA-ETDSWESFFVSV 296
Score = 42.3 bits (99), Expect = 0.001
Identities = 62/429 (14%), Positives = 116/429 (27%), Gaps = 157/429 (36%)
Query: 34 SYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYG--IPVPRYALVNREVPYQELDY--- 87
S+ +L LV P + QL E++ +P P + P +
Sbjct: 12 SHGSLEHVLLV----PTASFF----IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 88 ---FIEEE-------DFVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGM---KEL 133
++ F +V + F + G+D H++ + KEL
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTE-FENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 134 FR------KVGNRSSEFHPD---VRRVRREGSYIYEEFMPTGG---TDV------KVYTV 175
+ + R + + R V + + F GG TD +Y
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF---GGQGNTDDYFEELRDLYQT 179
Query: 176 GPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLL-----------TPNEKQMAR-EV-C- 221
+ S ++R E + L TP++ + + C
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 222 -IAFRQAVCGFDLLRCEG------RSYVCDVNG----------------W-SFVKNSYKY 257
I Q + G RSY+ G W SF + K
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 258 YDDAACVLRKMF---LEAK--APHLSSAIPPILPWKVNEPVQPTEGLTRQGSGLGTFGQS 312
+ +F + P+ S +PP + + + ++ EG+
Sbjct: 300 -------ITVLFFIGVRCYEAYPNTS--LPPSI---LEDSLENNEGVP------------ 335
Query: 313 EELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDA 372
+P ML + + Q+QD ++
Sbjct: 336 ---------------SP----------------MLSISN---------LTQEQVQDYVNK 355
Query: 373 TRILVPRSR 381
T +P +
Sbjct: 356 TNSHLPAGK 364
Score = 32.7 bits (74), Expect = 0.80
Identities = 48/323 (14%), Positives = 91/323 (28%), Gaps = 123/323 (38%)
Query: 461 GSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDS 520
GS +G G+ DL Y + S A A+ + + D+
Sbjct: 1625 GSQEQGMGM---------DL--YKT-------SKA--AQDVWN-RA------------DN 1651
Query: 521 SMLDGLDNASIEMEEAKARLNEIIKSG--SKMIHSNGSSDCPWMADGVGLPPNASELL-- 576
D SI +I+ + + IH G G + N S ++
Sbjct: 1652 HFKDTY-GFSIL---------DIVINNPVNLTIHFGG-------EKGKRIRENYSAMIFE 1694
Query: 577 ------PKLVKLTKKVTEQVRQLA-KDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRI 629
K K+ K++ E + E L+ T + Q AL
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ-------FTQP-AL---------- 1736
Query: 630 AAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQIPDV--------YDSCKYDLLHN 681
L+ A + L K + + Y + L
Sbjct: 1737 ----------TLMEKAAFEDL--------KSKG-LIPADATFAGHSLGEYAA----LASL 1773
Query: 682 AH-LNLE-GLDELFKVAQLLADGVIPNEYG--------INPKQKLKIGSKIARRLLGKLL 731
A +++E ++ +F + V +E G INP + + + ++ L ++
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR---VAASFSQEALQYVV 1830
Query: 732 IDLRNTREEAISVAELKSSQDQV 754
+ + + Q
Sbjct: 1831 ERVGKRTGWLVEIVNYNVENQQY 1853
Score = 31.2 bits (70), Expect = 2.1
Identities = 46/301 (15%), Positives = 76/301 (25%), Gaps = 137/301 (45%)
Query: 195 MRNPDGKEVR--YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWS--- 249
M G ++ A++V + +A D ++ D G+S
Sbjct: 1631 M----GMDLYKTSKA---------AQDV---WNRA----D-------NHFKDTYGFSILD 1663
Query: 250 FVKN------------------------SYKYYDDAACVLRKMFLEAKAPHLSSAIPPIL 285
V N ++ D K+F E H +S
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN-EHSTSYT---- 1718
Query: 286 PWKVNEPVQPTEGLTRQGSGLGT-FGQSEELRCVIAVMRHGDRTPKQKVKLKVTEEKLLN 344
++ L+ T F Q A+ EK
Sbjct: 1719 -FR-----SEKGLLSA------TQFTQ-------PALT---------------LMEKAAF 1744
Query: 345 LMLKYNGGRPR----A-----E-TKLKS---AVQLQDLLDATRILVPRSRPGRESDSEAE 391
LK G P A E L S + ++ L++ +V R G
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE----VV-FYR-GMTMQVAVP 1798
Query: 392 DFEHSKKRIICVAILHLGGQFEKFFNVQDV-------------LLSIQCHLLLANL-VSG 437
E + +AI G+ F+ + + L+ I N V
Sbjct: 1799 RDELGRSNYGMIAI--NPGRVAASFSQEALQYVVERVGKRTGWLVEI------VNYNVEN 1850
Query: 438 Q 438
Q
Sbjct: 1851 Q 1851
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.5 bits (91), Expect = 0.001
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 19/48 (39%)
Query: 927 ERLQEVGSYLTLEKMEKMIRPFAMPAEDFPPPSTPAGFTGYFAKSASV 974
E+ Q L+K++ ++ +A S PA A A++
Sbjct: 18 EK-QA------LKKLQASLKLYA-------DDSAPA-----LAIKATM 46
Score = 35.3 bits (80), Expect = 0.033
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 38/68 (55%)
Query: 465 EGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLD 524
E L +L ++ LK+Y+ D SA A A I
Sbjct: 18 EKQALKKLQAS----LKLYADD------SAPALA------------I------------- 42
Query: 525 GLDNASIE 532
A++E
Sbjct: 43 ---KATME 47
Score = 28.4 bits (62), Expect = 6.8
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 6/29 (20%)
Query: 751 QDQVSKSTKTEKEDKDY-P---PKLFIKA 775
+ Q K K + K Y P L IKA
Sbjct: 18 EKQALK--KLQASLKLYADDSAPALAIKA 44
>2gfi_A Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces castellii}
Length = 458
Score = 38.3 bits (88), Expect = 0.013
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 471 RLHSTYRH------DLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLD 524
+ Y L +++S+ GRV ++ FA+G + + + +++S+D+ M
Sbjct: 143 AFRTKYGELFDTNDTLPVFTSNSGRVYQTSQYFARGFMGDDFSNDTVKTNIISEDADMGA 202
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 38.0 bits (88), Expect = 0.014
Identities = 21/153 (13%), Positives = 48/153 (31%), Gaps = 44/153 (28%)
Query: 52 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPV 111
D+ K+ + K G+ + V ++ +EE P + KP
Sbjct: 136 NARDKNKMRDAFNKAGVKSIKNKRVTTL---EDFRAALEEIGT----------PLILKPT 182
Query: 112 HGDDHSIMIYYPSSAGGGM---------KELFRKVGNRSSEFHPDVRRVRREGSYIYEEF 162
+ ++ G+ ++ F +V + + + V E +I EEF
Sbjct: 183 YL-----------ASSIGVTLITDTETAEDEFNRVNDYLKSINVP-KAVTFEAPFIAEEF 230
Query: 163 MP-TGGTDVKVYTVGPEYAHAEARKSPVVDGVV 194
+ G + + ++G++
Sbjct: 231 LQGEYGDWYQTEGYSDYIS---------IEGIM 254
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 37.1 bits (86), Expect = 0.021
Identities = 31/210 (14%), Positives = 53/210 (25%), Gaps = 44/210 (20%)
Query: 41 PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGN 100
+V+ L D+ +YE + GI R E E
Sbjct: 100 TVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYATMASF---EEALAAGEVQL------ 150
Query: 101 RFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYE 160
P KP +G SA + + E + + I +
Sbjct: 151 ----PVFVKPRNG-----------SASIEV-----RRVETVEEVE---QLFSKNTDLIVQ 187
Query: 161 EFMPTGGTDVKVYTVGPE---YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMA 217
E + V Y + K + G + + V + ++
Sbjct: 188 ELLVGQELGVDAYVDLISGKVTSIFIKEKLTMRAGETDK---SRSVLRDDVF-----ELV 239
Query: 218 REVCIAFR-QAVCGFDLLRCEGRSYVCDVN 246
V FDL G Y+ ++N
Sbjct: 240 EHVLDGSGLVGPLDFDLFDVAGTLYLSEIN 269
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 35.4 bits (82), Expect = 0.099
Identities = 21/157 (13%), Positives = 39/157 (24%), Gaps = 54/157 (34%)
Query: 52 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPV 111
+ D+ K+ E +KY + R+ +V EL +E P + K
Sbjct: 106 MCGDKYKMKEAFKKYNVNTARHFVVRN---ENELKNALENLKL----------PVIVKAT 152
Query: 112 HGDDHSIMIYYPSSAGGGMKELFRKVGNRS--SEFHPDVRRVRREGSYIYEEFMPTGGTD 169
G+ + + + + I EEF+
Sbjct: 153 D-----------LQGSKGI----YIAKKEEEAIDGFNETMNLTKRDYCIVEEFIE----- 192
Query: 170 VKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYP 206
G E+ V +V +
Sbjct: 193 ------GYEFG---------AQAFV----YKNDVLFV 210
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella
tularensis subsp} PDB: 2glc_A 2glb_A 2gla_A 3it0_A*
3it1_A* 3it2_A 2p36_A*
Length = 342
Score = 35.0 bits (80), Expect = 0.10
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 310 GQSEELRCVIAVMRHGDRTP 329
G S +L V + RHGDR P
Sbjct: 3 GYSSKLIFVSMITRHGDRAP 22
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi
hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP:
c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A*
2l3h_A 2l77_A 2l79_A
Length = 354
Score = 34.7 bits (79), Expect = 0.12
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 313 EELRCVIAVMRHGDRTP 329
+EL+ V V RHGDR+P
Sbjct: 1 KELKFVTLVFRHGDRSP 17
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase,
phytate binding site, hydrolase; HET: IHP; 1.88A
{Enterobacter cloacae} PDB: 1nt4_A*
Length = 398
Score = 34.1 bits (77), Expect = 0.22
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 11/104 (10%)
Query: 467 TGLLRLHSTYRHD-LKIYSSDEGRVQMSAAAFAKGL----------LDLEGQLTPILVSL 515
G+++ D + Y++ R +A F G + G + P +
Sbjct: 69 QGMVKTGECPAADSVYAYANSLQRTVATAQFFITGAFPGCDVPVHHQEKMGTMDPTFNPV 128
Query: 516 VSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKMIHSNGSSDC 559
++ +S ++E E K +L E K +M + S C
Sbjct: 129 ITDNSPEFREKALKAMETERQKMQLTESYKLLEQMTNYADSPSC 172
Score = 33.3 bits (75), Expect = 0.41
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 314 ELRCVIAVMRHGDRTP 329
+L V+ + R R P
Sbjct: 6 QLEQVLIMSRANLRAP 21
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella
pneumoniae} PDB: 2wni_A 2wu0_A
Length = 418
Score = 34.1 bits (77), Expect = 0.26
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 308 TFGQSEELRCVIAVMRHGDRTP 329
+ +L V+ + RHG R P
Sbjct: 9 PPPRDWQLEKVVELSRHGIRPP 30
Score = 33.3 bits (75), Expect = 0.45
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 459 WWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 501
G H GLL+ + + +S R + +A A G
Sbjct: 70 EEGQHYRQLGLLQAGCPTAESIYVRASPLQRTRATAQALVDGA 112
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP;
2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A*
1dkm_A 1dkn_A 1dko_A 1dkl_A
Length = 410
Score = 33.0 bits (74), Expect = 0.47
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 314 ELRCVIAVMRHGDRTP 329
+L V+ V R G R P
Sbjct: 7 KLESVVIVSRAGVRAP 22
Score = 31.1 bits (69), Expect = 1.9
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 459 WWGSHSEGTGLLRLHSTYRHD-LKIYSSDEGRVQMSAAAFAKGL 501
+ GLL + + I + + R + + AFA GL
Sbjct: 61 YQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGL 104
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.4 bits (73), Expect = 0.59
Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 16/88 (18%)
Query: 27 YPLEKAESYATLR-----KPF--LVNELEPQHLLHDRRKV----YEQLEKYGIPVPRYAL 75
Y E E+ P +V+ LE +K YE E I +P
Sbjct: 124 YSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFENIAIELP---- 179
Query: 76 VNREVPYQELDYFIEEEDFVEVHGNRFW 103
E+ + E + D V+ +
Sbjct: 180 -PNEILFSENNDMDNNNDGVDELNKKCT 206
>3ln7_A Glutathione biosynthesis bifunctional protein GSH;
gamma-glutamylcysteine ligase domain, ATP-grAsp domain,
HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Length = 757
Score = 33.0 bits (75), Expect = 0.67
Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 29/134 (21%)
Query: 63 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 122
L+K G VP+ + + + E+ V KP
Sbjct: 497 LQKAGFNVPQSVEFTSLE--KAVASYALFENR----------AVVIKPKST--------- 535
Query: 123 PSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSY-IYEEFMPTGGTDVKVYTVGPEYAH 181
+ G G+ + V NR +F + RE + E+++ GT+ + + +G E
Sbjct: 536 --NYGLGITIFQQGVQNR-EDFAKALEIAFREDKEVMVEDYLV--GTEYRFFVLGDETLA 590
Query: 182 AEARKSPVV--DGV 193
R V D V
Sbjct: 591 VLLRVPANVVGDSV 604
>1qfx_A Protein (PH 2.5 acid phosphatase); phosphomonoesterase, hydrolase;
HET: NAG BMA MAN; 2.40A {Aspergillus niger} SCOP:
c.60.1.2
Length = 460
Score = 32.1 bits (72), Expect = 0.99
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Query: 471 RLHSTYRH------DLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLD 524
+ Y H + +SS GRV +A F +G L + + D
Sbjct: 132 DYKARYGHLWNGETVVPFFSSGYGRVIETARKFGEGFFGYNYSTNAALNIISESEVMGAD 191
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 31.7 bits (72), Expect = 1.5
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 13/83 (15%)
Query: 141 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDG 200
+ + +RR R + +G V+ Y + + A +++ N D
Sbjct: 2 AKNHYDILRRHIRSEDLLETPEFGSGSRIVEEYWIQEPFTKA----------IIVENEDE 51
Query: 201 KEVRYPVL---LTPNEKQMAREV 220
Y L ++ E ++ +
Sbjct: 52 FRNVYYALEPTVSSEEAEVISAL 74
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
2.95A {Streptococcus agalactiae serogroup V}
Length = 750
Score = 31.0 bits (70), Expect = 2.5
Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 34/140 (24%)
Query: 63 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 122
L++ P P +E F ++ KP V KP + + I
Sbjct: 492 LDEKHFPTPFGDEFTDR---KEA-----LNYFSQIQD----KPIVVKPKST-NFGLGI-- 536
Query: 123 PSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSY-IYEEFMPTGGTDVKVYTVGPEYAH 181
+F+ N + + + E S + EE++ GT+ + + + +
Sbjct: 537 ---------SIFKTSANL-ASYEKAIDIAFTEDSAILVEEYIE--GTEYRFFVLEGDCIA 584
Query: 182 AEARKSPVVDGVVMRNPDGK 201
R + V G DG
Sbjct: 585 VLLRVAANVVG------DGI 598
>3k4q_A 3-phytase A; PHYA, 3-phosphotase, MYO-inositol hexakis phosphate
phosphohydrolase, 37288-11-2, MYO-inositol hexakis
sulfate, 62-1; HET: IHS NAG; 2.20A {Aspergillus niger}
PDB: 3k4p_A* 1ihp_A
Length = 444
Score = 30.7 bits (68), Expect = 3.1
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 477 RHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQ 507
I SS RV S F +G + +
Sbjct: 130 NIVPFIRSSGSSRVIASGKKFIEGFQSTKLK 160
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell
WALL, peptidoglycan synthesis, vancomycin, ADP binding;
HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2
d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Length = 306
Score = 29.8 bits (68), Expect = 3.9
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 63 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG 113
+ G+PV + + R ++ D + P + KP
Sbjct: 104 WQGAGLPVAPWVALTRA------EFEKGLSDKQLAEISALGLPVIVKPSRE 148
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 30.0 bits (67), Expect = 4.6
Identities = 16/84 (19%), Positives = 31/84 (36%)
Query: 530 SIEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQ 589
S E + + + M+ +S A + L SE++P L +
Sbjct: 159 SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDS 218
Query: 590 VRQLAKDEDEDLAETNPYDVIPPY 613
VR LA + ++A+ P + +
Sbjct: 219 VRLLAVEACVNIAQLLPQEDLEAL 242
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 29.5 bits (67), Expect = 5.4
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 653 DLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGLDELFKVAQLLADGV 703
DL ++ I + Y + YD+ + + + L ++ D
Sbjct: 128 DLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADI---IPHFQDKT 175
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein
complex I, protein TRAN; 2.90A {Saccharomyces
cerevisiae} PDB: 3mv3_B
Length = 310
Score = 29.3 bits (65), Expect = 5.5
Identities = 7/60 (11%), Positives = 19/60 (31%)
Query: 862 KTKELDYMSYIVLRMFENTAVALEDPKRFRIELTFSRGADLSPLEKNDSEASSLHQEHTL 921
+ + L +++ + K + + F ++ LE + + E L
Sbjct: 46 TLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELENLLKDKQNSPYELYL 105
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger,
toprim, walker B ATP binding motif; 2.50A {Deinococcus
radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Length = 228
Score = 28.7 bits (65), Expect = 7.4
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 616 AKALGKTNIDVDRIAAGLPCGSEGFLLMYA 645
+ L + RIA G+P G L Y
Sbjct: 155 QRLLEPLGAAISRIAYGVPVGGS---LEYT 181
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 29.0 bits (66), Expect = 7.6
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 12/51 (23%)
Query: 63 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG 113
L GI P + + + ED ++ P V KP G
Sbjct: 105 LRYEGIETPDWIELTK------------MEDLNFDELDKLGFPLVVKPNSG 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.402
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,484,569
Number of extensions: 977479
Number of successful extensions: 2428
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2410
Number of HSP's successfully gapped: 62
Length of query: 993
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 890
Effective length of database: 3,825,930
Effective search space: 3405077700
Effective search space used: 3405077700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)